Query 005325
Match_columns 702
No_of_seqs 1038 out of 4455
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2321 WD40 repeat protein [G 100.0 7E-136 2E-140 1067.2 32.7 522 11-550 1-530 (703)
2 KOG0271 Notchless-like WD40 re 100.0 5.9E-37 1.3E-41 309.3 24.7 309 2-351 123-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.6E-37 1.9E-41 312.1 22.4 276 62-351 175-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 4.1E-35 9E-40 296.0 25.4 278 61-354 114-440 (480)
5 KOG0286 G-protein beta subunit 100.0 1.8E-32 3.9E-37 269.0 32.3 279 60-350 53-342 (343)
6 KOG0279 G protein beta subunit 100.0 2.9E-31 6.3E-36 259.2 30.3 279 60-353 13-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-32 7.4E-37 278.5 20.7 268 2-309 183-458 (459)
8 KOG0284 Polyadenylation factor 100.0 1.2E-31 2.7E-36 273.2 17.2 277 63-353 97-380 (464)
9 KOG0273 Beta-transducin family 100.0 7.7E-30 1.7E-34 264.2 30.4 277 59-352 232-522 (524)
10 KOG0296 Angio-associated migra 100.0 1.5E-29 3.2E-34 255.1 29.9 285 60-354 62-399 (399)
11 cd00200 WD40 WD40 domain, foun 100.0 2.4E-28 5.2E-33 250.4 37.0 274 60-350 7-288 (289)
12 KOG0315 G-protein beta subunit 100.0 2.2E-28 4.7E-33 235.4 30.3 290 7-332 10-309 (311)
13 KOG0295 WD40 repeat-containing 100.0 2E-29 4.3E-34 254.1 23.6 277 61-351 107-404 (406)
14 KOG0265 U5 snRNP-specific prot 100.0 1E-28 2.3E-33 243.5 28.1 280 56-349 41-334 (338)
15 KOG0279 G protein beta subunit 100.0 1.3E-28 2.7E-33 240.8 27.8 272 5-311 26-313 (315)
16 KOG0291 WD40-repeat-containing 100.0 1.1E-27 2.4E-32 259.8 35.9 318 2-353 104-508 (893)
17 KOG0263 Transcription initiati 100.0 1.4E-28 2.9E-33 269.8 25.3 269 61-354 377-650 (707)
18 KOG0291 WD40-repeat-containing 100.0 3.1E-27 6.7E-32 256.3 34.4 293 54-361 298-620 (893)
19 KOG0284 Polyadenylation factor 100.0 4E-29 8.7E-34 254.9 16.1 271 3-311 105-380 (464)
20 KOG0263 Transcription initiati 100.0 4.6E-28 1E-32 265.6 25.1 251 3-312 387-650 (707)
21 KOG0318 WD40 repeat stress pro 100.0 1E-26 2.3E-31 243.7 34.0 285 60-354 188-561 (603)
22 KOG0319 WD40-repeat-containing 100.0 2.6E-27 5.6E-32 257.0 28.5 301 10-351 296-617 (775)
23 KOG0266 WD40 repeat-containing 100.0 6.4E-27 1.4E-31 261.4 32.0 281 62-353 159-454 (456)
24 PLN00181 protein SPA1-RELATED; 100.0 7.1E-26 1.5E-30 270.5 40.4 278 60-352 481-792 (793)
25 KOG0285 Pleiotropic regulator 100.0 6.7E-27 1.5E-31 234.9 24.6 275 61-352 150-438 (460)
26 KOG0293 WD40 repeat-containing 100.0 3.9E-27 8.5E-32 240.3 23.0 278 61-353 223-513 (519)
27 KOG0286 G-protein beta subunit 100.0 3.4E-26 7.3E-31 225.0 28.7 265 3-309 64-343 (343)
28 KOG0276 Vesicle coat complex C 100.0 4.2E-27 9.2E-32 250.5 23.6 253 61-363 12-275 (794)
29 KOG0315 G-protein beta subunit 100.0 6.1E-26 1.3E-30 218.6 29.2 272 72-357 7-292 (311)
30 KOG0273 Beta-transducin family 100.0 1.3E-26 2.9E-31 240.3 26.2 285 60-354 176-483 (524)
31 KOG0313 Microtubule binding pr 100.0 2E-26 4.2E-31 233.6 25.1 279 56-353 99-418 (423)
32 KOG0316 Conserved WD40 repeat- 99.9 1.3E-26 2.9E-31 221.4 21.3 236 61-354 16-258 (307)
33 KOG0285 Pleiotropic regulator 99.9 1.3E-26 2.8E-31 232.9 21.1 239 99-352 147-388 (460)
34 KOG0282 mRNA splicing factor [ 99.9 6.3E-27 1.4E-31 243.7 17.8 280 60-351 212-503 (503)
35 KOG0319 WD40-repeat-containing 99.9 5.9E-26 1.3E-30 246.5 25.3 314 6-354 116-578 (775)
36 KOG0772 Uncharacterized conser 99.9 4.7E-26 1E-30 238.1 23.3 287 60-356 165-490 (641)
37 KOG0265 U5 snRNP-specific prot 99.9 4.6E-26 1E-30 224.9 21.6 251 97-362 41-305 (338)
38 KOG0645 WD40 repeat protein [G 99.9 2E-24 4.3E-29 210.7 32.3 280 53-352 4-310 (312)
39 KOG0318 WD40 repeat stress pro 99.9 2.9E-24 6.3E-29 225.5 32.9 285 59-355 56-352 (603)
40 KOG0292 Vesicle coat complex C 99.9 6.3E-25 1.4E-29 241.4 26.1 280 62-351 9-319 (1202)
41 PLN00181 protein SPA1-RELATED; 99.9 5.1E-24 1.1E-28 254.5 35.4 255 84-353 457-738 (793)
42 KOG0266 WD40 repeat-containing 99.9 1.9E-24 4E-29 241.5 29.6 241 108-358 162-414 (456)
43 KOG0283 WD40 repeat-containing 99.9 5.1E-25 1.1E-29 243.7 23.6 288 56-356 259-579 (712)
44 KOG0275 Conserved WD40 repeat- 99.9 1.4E-25 3.1E-30 222.4 17.1 279 61-350 212-506 (508)
45 KOG1407 WD40 repeat protein [F 99.9 4.5E-24 9.7E-29 207.1 27.1 268 61-345 19-294 (313)
46 KOG0276 Vesicle coat complex C 99.9 3.2E-24 6.9E-29 228.7 27.6 258 10-307 28-295 (794)
47 cd00200 WD40 WD40 domain, foun 99.9 3.1E-23 6.8E-28 212.4 34.3 266 3-309 18-289 (289)
48 KOG0640 mRNA cleavage stimulat 99.9 1E-24 2.2E-29 215.6 21.4 282 59-352 109-425 (430)
49 KOG0645 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 205.5 28.3 263 10-311 30-311 (312)
50 KOG0264 Nucleosome remodeling 99.9 2.9E-24 6.4E-29 222.9 25.0 261 50-354 112-405 (422)
51 KOG0281 Beta-TrCP (transducin 99.9 1E-25 2.3E-30 225.3 13.3 265 63-354 198-478 (499)
52 KOG0305 Anaphase promoting com 99.9 7.7E-24 1.7E-28 229.2 28.4 269 9-356 189-464 (484)
53 KOG0641 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 192.3 31.9 294 50-353 20-349 (350)
54 KOG0295 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 218.7 19.1 251 95-356 100-367 (406)
55 KOG0274 Cdc4 and related F-box 99.9 1.6E-23 3.5E-28 234.4 28.7 276 61-361 207-490 (537)
56 KOG0278 Serine/threonine kinas 99.9 2.6E-24 5.7E-29 207.3 18.3 287 60-363 12-307 (334)
57 KOG0277 Peroxisomal targeting 99.9 3.3E-24 7.2E-29 207.3 18.8 251 50-351 48-307 (311)
58 KOG0268 Sof1-like rRNA process 99.9 1.5E-24 3.2E-29 218.7 16.8 274 60-352 64-344 (433)
59 KOG0281 Beta-TrCP (transducin 99.9 5.2E-25 1.1E-29 220.3 12.9 257 10-316 210-482 (499)
60 KOG0306 WD40-repeat-containing 99.9 9.5E-23 2.1E-27 221.6 31.2 312 10-353 337-664 (888)
61 KOG0643 Translation initiation 99.9 7.2E-23 1.6E-27 199.3 26.9 279 60-353 8-317 (327)
62 KOG0639 Transducin-like enhanc 99.9 9E-24 2E-28 220.0 20.9 288 49-352 406-703 (705)
63 KOG0313 Microtubule binding pr 99.9 5.5E-23 1.2E-27 208.7 24.8 263 7-311 115-418 (423)
64 KOG0292 Vesicle coat complex C 99.9 2.6E-22 5.6E-27 221.0 30.2 285 55-354 43-398 (1202)
65 KOG0973 Histone transcription 99.9 1.2E-22 2.6E-27 230.1 28.5 287 62-354 13-356 (942)
66 KOG1446 Histone H3 (Lys4) meth 99.9 2.9E-21 6.4E-26 192.9 34.1 287 61-361 13-310 (311)
67 PTZ00421 coronin; Provisional 99.9 1.5E-21 3.1E-26 218.2 34.9 260 65-336 23-316 (493)
68 KOG0310 Conserved WD40 repeat- 99.9 2.2E-22 4.8E-27 210.3 25.8 275 58-350 22-306 (487)
69 KOG0299 U3 snoRNP-associated p 99.9 1.9E-22 4.2E-27 209.3 25.1 265 60-341 140-443 (479)
70 KOG0306 WD40-repeat-containing 99.9 1.6E-22 3.5E-27 219.8 25.4 288 56-353 314-622 (888)
71 KOG0316 Conserved WD40 repeat- 99.9 1.4E-22 3.1E-27 193.9 21.7 263 5-348 28-295 (307)
72 KOG0293 WD40 repeat-containing 99.9 1.2E-22 2.5E-27 207.8 21.3 274 2-311 232-513 (519)
73 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-21 4.2E-26 194.2 28.3 242 108-361 17-270 (311)
74 KOG2055 WD40 repeat protein [G 99.9 9.3E-22 2E-26 204.1 25.8 287 54-353 201-512 (514)
75 KOG2096 WD40 repeat protein [G 99.9 8.7E-22 1.9E-26 195.7 24.5 284 60-364 84-408 (420)
76 KOG0296 Angio-associated migra 99.9 1.6E-21 3.4E-26 197.4 26.7 239 57-311 101-398 (399)
77 KOG0289 mRNA splicing factor [ 99.9 1.2E-21 2.5E-26 201.8 26.1 278 63-353 220-506 (506)
78 KOG0275 Conserved WD40 repeat- 99.9 8.3E-23 1.8E-27 202.8 16.6 237 108-354 216-468 (508)
79 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 194.5 24.6 316 55-388 17-354 (405)
80 KOG0308 Conserved WD40 repeat- 99.9 1.4E-22 3.1E-27 217.4 18.6 268 72-354 35-328 (735)
81 KOG0288 WD40 repeat protein Ti 99.9 1E-22 2.2E-27 208.6 16.7 273 61-350 174-458 (459)
82 KOG0282 mRNA splicing factor [ 99.9 1.4E-22 3E-27 211.4 17.9 265 9-309 229-503 (503)
83 KOG1407 WD40 repeat protein [F 99.9 4E-21 8.7E-26 186.7 26.4 268 4-310 30-310 (313)
84 KOG0646 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 203.9 24.0 248 47-339 66-335 (476)
85 KOG0772 Uncharacterized conser 99.9 4.4E-22 9.6E-27 208.5 20.8 235 104-343 166-429 (641)
86 PTZ00421 coronin; Provisional 99.9 7E-21 1.5E-25 212.8 31.6 234 110-354 25-291 (493)
87 KOG0288 WD40 repeat protein Ti 99.9 2.6E-22 5.7E-27 205.6 17.7 259 14-308 194-458 (459)
88 KOG0647 mRNA export protein (c 99.9 4.1E-21 9E-26 190.1 25.0 282 63-357 28-329 (347)
89 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.5E-20 1.4E-24 192.4 36.0 289 10-333 4-300 (300)
90 KOG0277 Peroxisomal targeting 99.9 1.3E-21 2.9E-26 189.3 20.8 183 160-353 77-265 (311)
91 KOG1036 Mitotic spindle checkp 99.9 1.3E-20 2.8E-25 187.4 28.3 267 63-343 14-294 (323)
92 KOG4283 Transcription-coupled 99.9 7E-21 1.5E-25 187.5 24.7 287 61-352 42-364 (397)
93 KOG1408 WD40 repeat protein [F 99.9 1.4E-21 3.1E-26 210.7 21.6 299 10-354 395-714 (1080)
94 KOG0300 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 192.8 20.9 274 55-353 183-476 (481)
95 KOG1539 WD repeat protein [Gen 99.9 2.7E-20 5.8E-25 204.9 31.9 311 10-356 175-609 (910)
96 PTZ00420 coronin; Provisional 99.9 4.2E-20 9.2E-25 207.7 34.2 243 80-336 49-319 (568)
97 KOG0274 Cdc4 and related F-box 99.9 1.6E-20 3.6E-25 210.3 30.1 240 59-320 246-491 (537)
98 KOG1272 WD40-repeat-containing 99.9 3.2E-22 6.9E-27 207.5 14.8 328 64-467 131-462 (545)
99 KOG0310 Conserved WD40 repeat- 99.9 8.7E-22 1.9E-26 205.9 18.2 235 108-355 29-270 (487)
100 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.4E-25 204.5 26.9 275 61-358 13-293 (745)
101 KOG0294 WD40 repeat-containing 99.9 1.4E-20 3.1E-25 187.2 25.4 258 78-354 4-282 (362)
102 KOG2106 Uncharacterized conser 99.9 3.1E-19 6.8E-24 186.8 34.3 272 63-357 247-524 (626)
103 KOG1539 WD repeat protein [Gen 99.9 4.6E-20 9.9E-25 203.1 29.3 182 156-351 460-646 (910)
104 KOG1274 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 202.3 29.0 273 60-345 11-292 (933)
105 PTZ00420 coronin; Provisional 99.9 4.6E-19 9.9E-24 199.4 33.8 257 11-288 34-316 (568)
106 KOG0647 mRNA export protein (c 99.9 1.3E-19 2.7E-24 179.6 25.6 254 3-288 36-303 (347)
107 KOG0641 WD40 repeat protein [G 99.9 3.8E-19 8.1E-24 169.3 27.0 241 57-311 84-349 (350)
108 KOG2048 WD40 repeat protein [G 99.9 2.4E-19 5.1E-24 194.0 28.9 250 62-364 25-284 (691)
109 KOG0278 Serine/threonine kinas 99.9 8.3E-21 1.8E-25 183.2 15.3 246 54-316 50-302 (334)
110 KOG0302 Ribosome Assembly prot 99.9 4.7E-20 1E-24 187.3 21.3 252 59-345 148-431 (440)
111 KOG0289 mRNA splicing factor [ 99.9 6.1E-20 1.3E-24 189.3 21.8 228 113-351 227-460 (506)
112 KOG4328 WD40 protein [Function 99.9 6.6E-20 1.4E-24 190.3 22.1 281 61-351 185-493 (498)
113 KOG0308 Conserved WD40 repeat- 99.9 1.7E-20 3.7E-25 201.5 18.4 233 115-353 35-285 (735)
114 KOG0269 WD40 repeat-containing 99.8 2.1E-20 4.6E-25 204.4 17.9 278 61-352 38-339 (839)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.8E-18 1.3E-22 177.5 36.1 263 77-355 3-281 (300)
116 KOG0294 WD40 repeat-containing 99.8 5.7E-19 1.2E-23 175.9 25.6 259 52-330 30-304 (362)
117 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-19 4.5E-24 187.6 22.2 288 10-335 5-305 (673)
118 KOG0643 Translation initiation 99.8 9.1E-19 2E-23 170.8 25.0 236 98-347 5-255 (327)
119 KOG0300 WD40 repeat-containing 99.8 1.1E-19 2.5E-24 180.3 18.6 274 54-354 139-429 (481)
120 KOG1036 Mitotic spindle checkp 99.8 6E-19 1.3E-23 175.6 23.5 232 108-354 16-263 (323)
121 KOG0973 Histone transcription 99.8 3.8E-19 8.1E-24 201.9 25.0 246 55-312 62-356 (942)
122 KOG0299 U3 snoRNP-associated p 99.8 3E-19 6.6E-24 185.7 22.0 241 99-354 138-411 (479)
123 KOG0646 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 184.3 23.4 265 78-355 10-309 (476)
124 KOG0305 Anaphase promoting com 99.8 5E-19 1.1E-23 191.9 24.2 240 65-360 180-426 (484)
125 KOG0283 WD40 repeat-containing 99.8 1.2E-19 2.7E-24 201.3 19.7 238 101-354 265-533 (712)
126 KOG0650 WD40 repeat nucleolar 99.8 8.3E-19 1.8E-23 186.9 24.2 274 61-350 399-732 (733)
127 KOG0301 Phospholipase A2-activ 99.8 7.6E-19 1.7E-23 190.3 23.9 227 63-311 58-288 (745)
128 KOG0640 mRNA cleavage stimulat 99.8 3.9E-19 8.4E-24 176.3 19.0 294 2-311 120-426 (430)
129 KOG2055 WD40 repeat protein [G 99.8 7.4E-19 1.6E-23 182.7 21.8 272 6-311 224-512 (514)
130 KOG0270 WD40 repeat-containing 99.8 2E-18 4.3E-23 179.0 24.2 275 67-354 130-450 (463)
131 KOG0264 Nucleosome remodeling 99.8 8.9E-19 1.9E-23 182.3 21.7 233 14-311 144-404 (422)
132 KOG1332 Vesicle coat complex C 99.8 4E-19 8.7E-24 171.4 17.2 245 61-352 10-285 (299)
133 KOG1274 WD40 repeat protein [G 99.8 2.7E-18 5.9E-23 191.3 26.4 242 101-354 11-263 (933)
134 KOG2106 Uncharacterized conser 99.8 1.9E-17 4.2E-22 173.6 30.8 285 60-357 152-481 (626)
135 KOG4378 Nuclear protein COP1 [ 99.8 1E-18 2.2E-23 182.5 20.4 264 85-356 12-283 (673)
136 KOG0267 Microtubule severing p 99.8 3.3E-20 7.3E-25 201.3 9.7 229 61-344 27-259 (825)
137 KOG2096 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 165.8 25.3 280 2-310 94-401 (420)
138 KOG0269 WD40 repeat-containing 99.8 7.8E-19 1.7E-23 192.2 17.3 192 149-352 92-295 (839)
139 KOG2445 Nuclear pore complex c 99.8 2.4E-17 5.2E-22 163.9 26.0 257 61-352 12-317 (361)
140 KOG0307 Vesicle coat complex C 99.8 3.6E-19 7.9E-24 202.8 14.9 282 66-356 10-330 (1049)
141 KOG0639 Transducin-like enhanc 99.8 7.3E-19 1.6E-23 183.7 14.7 238 104-355 418-665 (705)
142 KOG0649 WD40 repeat protein [G 99.8 9.3E-17 2E-21 154.9 26.6 268 65-350 13-313 (325)
143 KOG1538 Uncharacterized conser 99.8 6.3E-18 1.4E-22 181.5 19.7 327 64-429 14-348 (1081)
144 KOG1332 Vesicle coat complex C 99.8 4.7E-18 1E-22 164.0 16.4 197 113-353 19-241 (299)
145 KOG2919 Guanine nucleotide-bin 99.8 4.4E-17 9.5E-22 162.8 23.6 274 66-354 53-368 (406)
146 KOG0268 Sof1-like rRNA process 99.8 1.7E-18 3.7E-23 175.1 13.3 237 99-354 62-303 (433)
147 KOG0302 Ribosome Assembly prot 99.8 1.4E-17 2.9E-22 169.5 19.7 220 176-415 201-434 (440)
148 KOG1408 WD40 repeat protein [F 99.8 4.4E-16 9.5E-21 168.7 29.3 281 62-354 260-672 (1080)
149 KOG0270 WD40 repeat-containing 99.8 3.3E-17 7.3E-22 169.9 19.8 258 4-271 188-455 (463)
150 KOG1063 RNA polymerase II elon 99.7 1.9E-16 4.1E-21 171.8 23.8 288 60-355 189-650 (764)
151 KOG0321 WD40 repeat-containing 99.7 1.5E-16 3.3E-21 171.1 22.8 280 66-352 53-390 (720)
152 KOG2321 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 165.4 25.6 268 2-310 59-342 (703)
153 KOG0267 Microtubule severing p 99.7 6E-18 1.3E-22 184.0 7.7 170 171-353 55-226 (825)
154 KOG0290 Conserved WD40 repeat- 99.7 6.8E-16 1.5E-20 152.5 21.0 249 45-342 67-355 (364)
155 KOG1445 Tumor-specific antigen 99.7 2.4E-16 5.3E-21 168.6 18.6 113 235-351 628-748 (1012)
156 KOG1517 Guanine nucleotide bin 99.7 1E-15 2.2E-20 172.3 23.9 281 61-354 1063-1382(1387)
157 KOG0321 WD40 repeat-containing 99.7 9.3E-16 2E-20 165.2 21.1 276 8-313 65-393 (720)
158 KOG1007 WD repeat protein TSSC 99.7 2.4E-15 5.1E-20 148.5 21.8 266 78-354 29-362 (370)
159 COG2319 FOG: WD40 repeat [Gene 99.7 1.4E-13 3.1E-18 148.0 37.1 283 59-356 62-362 (466)
160 KOG2048 WD40 repeat protein [G 99.7 2.9E-14 6.3E-19 155.0 30.7 241 13-288 43-301 (691)
161 KOG1063 RNA polymerase II elon 99.7 1.7E-14 3.7E-19 156.8 28.3 283 60-352 52-390 (764)
162 KOG4283 Transcription-coupled 99.7 7.4E-15 1.6E-19 145.3 23.2 202 104-315 43-280 (397)
163 KOG0307 Vesicle coat complex C 99.7 3.4E-16 7.4E-21 178.7 15.4 243 61-314 63-330 (1049)
164 COG2319 FOG: WD40 repeat [Gene 99.7 8E-13 1.7E-17 142.1 40.8 279 60-354 153-443 (466)
165 KOG4328 WD40 protein [Function 99.7 2.9E-15 6.4E-20 156.0 20.1 236 104-351 186-448 (498)
166 KOG1009 Chromatin assembly com 99.7 8.8E-15 1.9E-19 150.6 23.1 282 61-347 12-366 (434)
167 PRK11028 6-phosphogluconolacto 99.7 1.4E-13 3E-18 148.0 33.8 271 14-311 9-304 (330)
168 KOG1587 Cytoplasmic dynein int 99.7 5.8E-15 1.3E-19 164.7 22.8 262 59-354 239-517 (555)
169 KOG1188 WD40 repeat protein [G 99.7 1.7E-15 3.8E-20 152.7 16.8 226 118-354 41-347 (376)
170 KOG0650 WD40 repeat nucleolar 99.7 2.5E-15 5.5E-20 160.6 18.4 242 95-351 392-678 (733)
171 KOG2919 Guanine nucleotide-bin 99.7 9.4E-15 2E-19 146.3 20.9 244 108-357 52-331 (406)
172 KOG4227 WD40 repeat protein [G 99.6 1.8E-14 3.8E-19 147.0 21.3 286 59-351 53-385 (609)
173 KOG0642 Cell-cycle nuclear pro 99.6 2.2E-15 4.7E-20 160.7 14.9 234 10-271 309-567 (577)
174 KOG0290 Conserved WD40 repeat- 99.6 2.5E-14 5.5E-19 141.5 20.8 164 185-357 149-322 (364)
175 KOG2110 Uncharacterized conser 99.6 6.4E-13 1.4E-17 135.7 31.6 275 63-355 6-332 (391)
176 KOG0303 Actin-binding protein 99.6 2.8E-14 6.2E-19 146.2 21.6 211 98-355 76-296 (472)
177 KOG1273 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 144.2 19.3 198 148-355 27-228 (405)
178 KOG1334 WD40 repeat protein [G 99.6 1.6E-15 3.4E-20 159.0 12.7 295 52-351 131-464 (559)
179 PRK11028 6-phosphogluconolacto 99.6 6.7E-13 1.5E-17 142.7 32.8 268 75-353 2-304 (330)
180 KOG1538 Uncharacterized conser 99.6 3.2E-14 7E-19 153.3 20.1 263 3-311 21-293 (1081)
181 KOG2445 Nuclear pore complex c 99.6 1.1E-13 2.3E-18 138.1 21.8 208 106-355 14-258 (361)
182 KOG1188 WD40 repeat protein [G 99.6 2.1E-14 4.5E-19 145.1 16.9 190 158-356 42-245 (376)
183 KOG0322 G-protein beta subunit 99.6 1.7E-14 3.7E-19 141.0 14.8 283 60-352 12-322 (323)
184 KOG1034 Transcriptional repres 99.6 1.6E-13 3.4E-18 138.0 21.3 247 60-351 87-381 (385)
185 KOG0642 Cell-cycle nuclear pro 99.6 1.6E-14 3.6E-19 154.1 14.2 252 61-352 293-560 (577)
186 KOG0649 WD40 repeat protein [G 99.6 4.2E-13 9.1E-18 129.9 22.5 226 111-352 16-273 (325)
187 PRK01742 tolB translocation pr 99.6 5.5E-13 1.2E-17 148.5 25.1 217 61-334 202-426 (429)
188 KOG1007 WD repeat protein TSSC 99.6 8E-14 1.7E-18 137.8 16.1 204 149-358 68-294 (370)
189 KOG1272 WD40-repeat-containing 99.6 6.7E-15 1.5E-19 153.5 8.1 272 54-401 162-438 (545)
190 KOG0303 Actin-binding protein 99.5 3.7E-13 8E-18 138.2 19.9 236 60-339 79-325 (472)
191 KOG1240 Protein kinase contain 99.5 1.2E-12 2.6E-17 150.3 26.0 263 56-354 1042-1335(1431)
192 KOG1034 Transcriptional repres 99.5 1.1E-13 2.3E-18 139.3 14.8 190 159-357 108-341 (385)
193 KOG1963 WD40 repeat protein [G 99.5 7.6E-12 1.6E-16 140.2 30.9 307 2-352 24-374 (792)
194 KOG1963 WD40 repeat protein [G 99.5 6.2E-12 1.3E-16 140.9 28.8 284 64-354 207-539 (792)
195 KOG4497 Uncharacterized conser 99.5 6.8E-12 1.5E-16 126.2 25.6 291 54-354 40-432 (447)
196 KOG0322 G-protein beta subunit 99.5 5.5E-13 1.2E-17 130.6 16.6 263 10-310 28-322 (323)
197 KOG1517 Guanine nucleotide bin 99.5 2.3E-12 4.9E-17 145.8 22.8 242 62-313 1109-1383(1387)
198 KOG0644 Uncharacterized conser 99.5 9.1E-14 2E-18 153.5 10.6 241 60-352 188-467 (1113)
199 KOG4227 WD40 repeat protein [G 99.5 1.4E-12 3.1E-17 133.2 18.0 250 100-358 53-327 (609)
200 KOG3881 Uncharacterized conser 99.5 4.7E-12 1E-16 130.3 21.3 263 56-334 49-342 (412)
201 KOG1445 Tumor-specific antigen 99.5 1.1E-12 2.5E-17 140.9 16.3 230 81-354 599-845 (1012)
202 KOG1524 WD40 repeat-containing 99.5 3.7E-12 8E-17 135.0 19.6 206 118-352 76-285 (737)
203 KOG1587 Cytoplasmic dynein int 99.5 4.5E-12 9.7E-17 141.8 21.0 225 126-355 221-474 (555)
204 KOG2111 Uncharacterized conser 99.4 1.4E-10 3E-15 116.8 28.8 231 66-312 9-257 (346)
205 KOG0771 Prolactin regulatory e 99.4 1.7E-12 3.6E-17 134.9 15.6 198 66-310 148-353 (398)
206 KOG1524 WD40 repeat-containing 99.4 2.1E-12 4.5E-17 136.9 16.0 217 108-343 17-246 (737)
207 KOG2110 Uncharacterized conser 99.4 1.3E-10 2.7E-15 119.2 26.3 230 110-354 10-249 (391)
208 KOG1310 WD40 repeat protein [G 99.4 2.5E-12 5.4E-17 136.6 13.5 241 45-319 32-311 (758)
209 KOG0280 Uncharacterized conser 99.4 1.2E-10 2.6E-15 116.0 23.6 267 63-342 15-320 (339)
210 KOG0771 Prolactin regulatory e 99.4 6.3E-12 1.4E-16 130.7 14.7 195 148-354 148-355 (398)
211 KOG4497 Uncharacterized conser 99.4 5.6E-11 1.2E-15 119.7 20.8 268 67-351 13-389 (447)
212 PRK03629 tolB translocation pr 99.4 4.1E-10 8.8E-15 125.4 29.6 232 84-333 178-427 (429)
213 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.3E-15 124.4 19.8 198 71-288 182-384 (636)
214 KOG3881 Uncharacterized conser 99.3 7E-11 1.5E-15 121.7 17.7 220 3-288 113-341 (412)
215 PF02239 Cytochrom_D1: Cytochr 99.3 9.9E-10 2.1E-14 119.3 27.9 281 2-321 44-357 (369)
216 KOG1523 Actin-related protein 99.3 1.6E-10 3.4E-15 116.4 19.7 231 61-302 9-269 (361)
217 PRK01742 tolB translocation pr 99.3 4.4E-10 9.5E-15 125.3 25.5 206 126-352 183-400 (429)
218 KOG1523 Actin-related protein 99.3 6.4E-11 1.4E-15 119.2 16.4 189 152-351 18-234 (361)
219 KOG2394 WD40 protein DMR-N9 [G 99.3 5.5E-11 1.2E-15 126.6 16.6 175 154-333 183-384 (636)
220 PF08662 eIF2A: Eukaryotic tra 99.3 2.1E-10 4.5E-15 113.4 19.9 136 167-320 40-187 (194)
221 KOG1009 Chromatin assembly com 99.3 1.7E-11 3.7E-16 126.7 12.3 160 187-352 14-194 (434)
222 PRK04922 tolB translocation pr 99.3 1.1E-09 2.4E-14 122.2 28.0 231 85-333 184-432 (433)
223 KOG0644 Uncharacterized conser 99.3 3.4E-12 7.4E-17 141.3 7.4 186 159-355 205-428 (1113)
224 PRK02889 tolB translocation pr 99.3 4.6E-10 9.9E-15 125.0 24.5 221 60-334 193-425 (427)
225 KOG2111 Uncharacterized conser 99.3 2E-09 4.3E-14 108.6 25.7 228 111-354 11-257 (346)
226 KOG1240 Protein kinase contain 99.3 3.2E-10 7E-15 130.7 22.8 321 3-350 1057-1430(1431)
227 TIGR03300 assembly_YfgL outer 99.3 6.2E-09 1.3E-13 114.1 32.1 256 73-350 104-376 (377)
228 KOG2139 WD40 repeat protein [G 99.3 2E-09 4.3E-14 110.0 25.5 276 63-352 99-430 (445)
229 PF08662 eIF2A: Eukaryotic tra 99.3 7.7E-10 1.7E-14 109.4 21.1 92 167-271 84-184 (194)
230 KOG2139 WD40 repeat protein [G 99.3 2.2E-09 4.9E-14 109.7 24.5 270 11-310 114-430 (445)
231 PRK03629 tolB translocation pr 99.2 3.5E-09 7.6E-14 117.9 28.5 207 128-350 180-400 (429)
232 PF10282 Lactonase: Lactonase, 99.2 7.3E-08 1.6E-12 104.3 37.8 261 52-317 26-330 (345)
233 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3E-14 117.8 22.1 256 72-355 3-271 (541)
234 PRK05137 tolB translocation pr 99.2 1E-08 2.3E-13 114.5 30.1 230 85-333 182-432 (435)
235 PF08159 NUC153: NUC153 domain 99.2 6.9E-12 1.5E-16 82.0 2.4 29 505-533 1-29 (30)
236 PRK05137 tolB translocation pr 99.2 8.4E-09 1.8E-13 115.3 28.9 200 128-343 183-396 (435)
237 KOG2315 Predicted translation 99.2 8.5E-09 1.8E-13 111.0 26.1 296 3-346 43-377 (566)
238 KOG1334 WD40 repeat protein [G 99.2 3.7E-10 8E-15 119.2 15.4 251 97-352 136-423 (559)
239 KOG1354 Serine/threonine prote 99.2 1.3E-09 2.9E-14 110.6 18.3 277 63-352 26-358 (433)
240 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.8E-07 3.8E-12 100.0 34.3 245 70-321 53-340 (352)
241 PRK04922 tolB translocation pr 99.1 9.7E-09 2.1E-13 114.7 26.0 210 127-352 184-408 (433)
242 PF02239 Cytochrom_D1: Cytochr 99.1 4.8E-08 1E-12 106.2 30.5 271 75-355 6-304 (369)
243 PRK02889 tolB translocation pr 99.1 1.5E-08 3.2E-13 112.9 26.8 212 118-345 164-392 (427)
244 KOG1310 WD40 repeat protein [G 99.1 4E-10 8.7E-15 120.1 12.2 210 96-354 43-304 (758)
245 KOG1409 Uncharacterized conser 99.1 1.7E-08 3.7E-13 102.8 21.8 277 60-355 66-396 (404)
246 TIGR02800 propeller_TolB tol-p 99.1 3.5E-08 7.5E-13 109.5 26.5 207 128-350 171-391 (417)
247 KOG2041 WD40 repeat protein [G 99.0 9.8E-09 2.1E-13 112.5 19.4 287 63-368 15-349 (1189)
248 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.2E-07 6.8E-12 98.0 30.5 243 1-273 52-338 (352)
249 PRK00178 tolB translocation pr 99.0 5.3E-08 1.2E-12 108.7 25.8 219 61-333 197-427 (430)
250 KOG0974 WD-repeat protein WDR6 99.0 5.6E-09 1.2E-13 119.4 17.2 188 111-312 93-289 (967)
251 TIGR02800 propeller_TolB tol-p 99.0 1.7E-07 3.7E-12 104.0 29.0 229 85-331 170-416 (417)
252 KOG2315 Predicted translation 99.0 4.5E-08 9.9E-13 105.5 23.0 247 66-335 129-412 (566)
253 PRK04792 tolB translocation pr 99.0 1.1E-07 2.3E-12 106.6 27.3 230 86-333 199-446 (448)
254 PRK01029 tolB translocation pr 99.0 7.2E-08 1.6E-12 107.3 25.2 223 63-334 185-425 (428)
255 PRK01029 tolB translocation pr 99.0 7.6E-08 1.7E-12 107.0 24.8 180 61-288 229-424 (428)
256 COG2706 3-carboxymuconate cycl 99.0 1.6E-06 3.5E-11 89.7 32.3 279 16-353 15-321 (346)
257 PF10282 Lactonase: Lactonase, 99.0 2.5E-06 5.4E-11 92.4 35.7 267 78-353 2-322 (345)
258 KOG0974 WD-repeat protein WDR6 99.0 3.1E-08 6.7E-13 113.5 21.2 183 157-354 100-289 (967)
259 KOG2314 Translation initiation 99.0 8E-07 1.7E-11 95.7 29.6 275 56-345 244-559 (698)
260 PRK11138 outer membrane biogen 99.0 7.1E-07 1.5E-11 98.5 30.8 257 74-353 120-394 (394)
261 TIGR03300 assembly_YfgL outer 99.0 6.7E-07 1.4E-11 98.0 30.3 260 74-352 65-337 (377)
262 PRK00178 tolB translocation pr 99.0 3.4E-07 7.5E-12 102.2 28.2 211 128-354 180-405 (430)
263 KOG1064 RAVE (regulator of V-A 98.9 1.4E-08 3E-13 121.1 16.0 275 10-321 2121-2408(2439)
264 COG5170 CDC55 Serine/threonine 98.9 3.1E-08 6.7E-13 99.5 16.2 276 62-356 26-370 (460)
265 KOG2695 WD40 repeat protein [G 98.9 5.3E-09 1.1E-13 106.4 10.5 184 137-333 205-402 (425)
266 KOG1409 Uncharacterized conser 98.9 2.2E-08 4.7E-13 102.1 14.8 246 98-361 19-279 (404)
267 KOG4532 WD40-like repeat conta 98.9 1.6E-07 3.5E-12 92.8 20.4 217 118-343 85-322 (344)
268 KOG4547 WD40 repeat-containing 98.9 1.1E-07 2.5E-12 103.2 21.2 209 114-354 2-221 (541)
269 KOG4190 Uncharacterized conser 98.9 5.8E-09 1.3E-13 111.2 10.4 243 98-351 730-986 (1034)
270 PLN02919 haloacid dehalogenase 98.9 2.2E-06 4.8E-11 105.0 34.1 248 58-315 566-892 (1057)
271 KOG1064 RAVE (regulator of V-A 98.9 1.3E-08 2.9E-13 121.2 13.4 187 63-271 2209-2404(2439)
272 PRK04792 tolB translocation pr 98.9 9.2E-07 2E-11 99.1 27.3 209 128-352 199-422 (448)
273 KOG1354 Serine/threonine prote 98.9 1.4E-07 3E-12 96.2 18.4 210 56-268 78-362 (433)
274 PLN02919 haloacid dehalogenase 98.9 6.3E-06 1.4E-10 101.0 36.3 237 111-354 573-889 (1057)
275 PF04762 IKI3: IKI3 family; I 98.8 6.2E-06 1.3E-10 99.4 34.0 276 52-353 112-456 (928)
276 KOG0309 Conserved WD40 repeat- 98.8 2.7E-08 6E-13 109.5 12.1 278 108-397 27-335 (1081)
277 COG4946 Uncharacterized protei 98.8 4.8E-06 1E-10 88.3 27.1 242 82-340 243-505 (668)
278 KOG1832 HIV-1 Vpr-binding prot 98.8 5.5E-09 1.2E-13 116.7 5.5 252 61-341 1100-1377(1516)
279 COG5354 Uncharacterized protei 98.7 5.3E-06 1.2E-10 88.9 26.4 270 65-353 74-395 (561)
280 PF15492 Nbas_N: Neuroblastoma 98.7 4E-06 8.7E-11 84.5 23.7 217 3-271 6-265 (282)
281 KOG3914 WD repeat protein WDR4 98.7 2.2E-07 4.9E-12 96.8 14.9 167 63-271 63-229 (390)
282 PF08450 SGL: SMP-30/Gluconola 98.7 2.3E-05 5.1E-10 80.4 30.1 211 116-342 11-244 (246)
283 PF13360 PQQ_2: PQQ-like domai 98.7 8.2E-06 1.8E-10 82.9 26.2 224 84-318 2-237 (238)
284 KOG1275 PAB-dependent poly(A) 98.7 2.4E-07 5.2E-12 104.7 15.6 179 157-351 148-340 (1118)
285 KOG0280 Uncharacterized conser 98.6 7.3E-07 1.6E-11 89.4 14.3 165 159-334 88-264 (339)
286 PRK04043 tolB translocation pr 98.6 1.4E-05 2.9E-10 88.7 25.9 210 64-328 189-416 (419)
287 KOG4714 Nucleoporin [Nuclear s 98.6 5.9E-07 1.3E-11 88.6 12.7 148 113-266 97-255 (319)
288 KOG0309 Conserved WD40 repeat- 98.6 5E-07 1.1E-11 99.9 13.3 281 61-354 23-340 (1081)
289 COG5354 Uncharacterized protei 98.6 1.5E-05 3.2E-10 85.6 23.1 270 63-352 33-347 (561)
290 COG2706 3-carboxymuconate cycl 98.5 0.00034 7.5E-09 72.7 31.7 223 51-315 76-327 (346)
291 KOG3914 WD repeat protein WDR4 98.5 5.2E-07 1.1E-11 94.1 11.2 103 204-320 128-232 (390)
292 KOG2314 Translation initiation 98.5 1.4E-05 3.1E-10 86.3 21.9 263 66-345 214-514 (698)
293 KOG4532 WD40-like repeat conta 98.5 1.5E-05 3.3E-10 79.2 20.0 186 78-269 87-286 (344)
294 KOG1912 WD40 repeat protein [G 98.5 0.00011 2.5E-09 82.3 28.9 315 7-352 78-550 (1062)
295 KOG1645 RING-finger-containing 98.5 1.2E-06 2.6E-11 91.2 12.5 93 168-267 175-268 (463)
296 PF15492 Nbas_N: Neuroblastoma 98.5 0.00011 2.4E-09 74.2 25.9 228 112-362 4-268 (282)
297 KOG2041 WD40 repeat protein [G 98.5 1.3E-05 2.8E-10 88.7 20.7 238 56-310 64-336 (1189)
298 PF07433 DUF1513: Protein of u 98.5 0.00025 5.5E-09 73.6 29.2 240 61-346 3-278 (305)
299 COG4946 Uncharacterized protei 98.4 0.0004 8.6E-09 74.1 29.6 224 2-253 274-506 (668)
300 PF13360 PQQ_2: PQQ-like domai 98.4 0.00021 4.6E-09 72.5 27.0 186 72-271 34-236 (238)
301 KOG4714 Nucleoporin [Nuclear s 98.4 1.5E-06 3.3E-11 85.8 10.3 148 155-312 100-255 (319)
302 KOG1912 WD40 repeat protein [G 98.4 5.8E-06 1.3E-10 92.2 15.1 155 187-350 16-183 (1062)
303 PRK11138 outer membrane biogen 98.4 0.00012 2.6E-09 80.8 25.9 264 74-353 69-353 (394)
304 PRK04043 tolB translocation pr 98.4 0.00025 5.4E-09 78.7 28.0 188 149-354 192-399 (419)
305 KOG4190 Uncharacterized conser 98.4 2.7E-06 5.9E-11 91.2 11.7 273 57-349 729-1032(1034)
306 PF04762 IKI3: IKI3 family; I 98.4 0.00028 6.1E-09 85.3 30.2 273 63-351 76-377 (928)
307 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4E-11 61.3 6.4 39 176-214 1-39 (39)
308 KOG1275 PAB-dependent poly(A) 98.3 8.6E-06 1.9E-10 92.5 14.8 149 150-310 181-341 (1118)
309 KOG2114 Vacuolar assembly/sort 98.3 5.7E-05 1.2E-09 85.8 20.7 195 157-357 36-247 (933)
310 KOG2066 Vacuolar assembly/sort 98.3 1.9E-05 4E-10 89.0 16.5 131 195-339 80-221 (846)
311 KOG2114 Vacuolar assembly/sort 98.3 0.00019 4E-09 81.8 23.8 220 64-324 27-257 (933)
312 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0012 2.5E-08 71.9 29.8 261 62-344 42-348 (353)
313 KOG1920 IkappaB kinase complex 98.2 0.00053 1.1E-08 80.9 27.5 237 63-310 69-364 (1265)
314 PF06433 Me-amine-dh_H: Methyl 98.2 0.00075 1.6E-08 71.0 26.2 249 67-321 40-330 (342)
315 PF08450 SGL: SMP-30/Gluconola 98.2 0.0027 5.9E-08 65.1 30.1 218 67-300 4-244 (246)
316 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00056 1.2E-08 68.1 22.9 149 70-267 18-167 (354)
317 KOG2066 Vacuolar assembly/sort 98.2 5.1E-05 1.1E-09 85.6 17.7 194 54-265 31-233 (846)
318 KOG2695 WD40 repeat protein [G 98.2 7E-06 1.5E-10 84.1 10.0 133 149-287 257-401 (425)
319 KOG0882 Cyclophilin-related pe 98.2 5.3E-05 1.1E-09 80.2 15.7 208 61-271 8-237 (558)
320 cd00216 PQQ_DH Dehydrogenases 98.1 0.0042 9.2E-08 70.5 30.7 143 167-327 257-439 (488)
321 PF04841 Vps16_N: Vps16, N-ter 98.1 0.017 3.6E-07 64.1 34.3 205 67-287 33-268 (410)
322 PF04053 Coatomer_WDAD: Coatom 98.1 0.00094 2E-08 74.2 23.9 195 65-288 35-242 (443)
323 KOG0882 Cyclophilin-related pe 98.0 5.9E-05 1.3E-09 79.9 13.4 220 53-275 43-315 (558)
324 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0099 2.1E-07 59.5 27.6 266 73-353 62-351 (354)
325 PF07433 DUF1513: Protein of u 98.0 0.00083 1.8E-08 69.8 21.1 204 68-305 56-279 (305)
326 COG5170 CDC55 Serine/threonine 98.0 4.1E-05 8.9E-10 77.5 11.1 209 104-354 25-310 (460)
327 PF04053 Coatomer_WDAD: Coatom 98.0 0.0019 4.1E-08 71.7 25.1 213 109-354 36-263 (443)
328 PF00400 WD40: WD domain, G-be 98.0 1.9E-05 4.1E-10 56.0 6.2 38 219-263 2-39 (39)
329 KOG1645 RING-finger-containing 98.0 0.0002 4.4E-09 75.0 15.7 229 2-265 201-461 (463)
330 PRK02888 nitrous-oxide reducta 98.0 0.0011 2.4E-08 75.0 22.6 136 195-346 285-454 (635)
331 PF08596 Lgl_C: Lethal giant l 98.0 0.0024 5.2E-08 70.0 24.8 243 108-357 4-294 (395)
332 PF11768 DUF3312: Protein of u 97.9 0.0019 4.1E-08 71.5 22.6 74 185-267 258-331 (545)
333 KOG3617 WD40 and TPR repeat-co 97.9 0.00012 2.7E-09 82.5 12.7 219 126-362 40-268 (1416)
334 KOG1008 Uncharacterized conser 97.9 6.7E-06 1.4E-10 90.3 2.6 226 118-354 71-336 (783)
335 PF14727 PHTB1_N: PTHB1 N-term 97.9 0.036 7.8E-07 60.9 31.2 271 71-353 33-360 (418)
336 cd00216 PQQ_DH Dehydrogenases 97.8 0.01 2.2E-07 67.5 27.9 262 78-353 64-424 (488)
337 PF11768 DUF3312: Protein of u 97.8 0.00056 1.2E-08 75.5 16.1 112 234-352 259-399 (545)
338 KOG1920 IkappaB kinase complex 97.8 0.00085 1.8E-08 79.2 17.9 196 149-352 73-321 (1265)
339 KOG1832 HIV-1 Vpr-binding prot 97.8 1.2E-05 2.6E-10 90.8 2.5 186 149-356 1106-1303(1516)
340 PF06433 Me-amine-dh_H: Methyl 97.8 0.025 5.4E-07 59.8 26.8 200 66-275 98-330 (342)
341 KOG3621 WD40 repeat-containing 97.7 0.0004 8.7E-09 77.7 13.9 117 186-311 76-197 (726)
342 PRK02888 nitrous-oxide reducta 97.7 0.0039 8.5E-08 70.6 21.5 147 194-354 200-405 (635)
343 PF08553 VID27: VID27 cytoplas 97.6 0.00092 2E-08 78.2 15.8 134 164-310 502-646 (794)
344 PF00780 CNH: CNH domain; Int 97.6 0.059 1.3E-06 56.1 27.7 228 72-321 5-265 (275)
345 KOG1897 Damage-specific DNA bi 97.6 0.059 1.3E-06 63.0 28.6 293 62-364 583-918 (1096)
346 KOG4640 Anaphase-promoting com 97.6 0.00025 5.4E-09 78.4 9.4 93 188-288 22-115 (665)
347 PF06977 SdiA-regulated: SdiA- 97.6 0.035 7.6E-07 56.8 24.3 196 148-350 25-247 (248)
348 PF14870 PSII_BNR: Photosynthe 97.5 0.16 3.5E-06 53.5 32.2 269 59-350 13-301 (302)
349 KOG1008 Uncharacterized conser 97.5 2.9E-05 6.3E-10 85.4 1.0 188 158-354 72-276 (783)
350 PF14583 Pectate_lyase22: Olig 97.5 0.18 4E-06 54.3 29.3 269 69-352 42-380 (386)
351 COG3391 Uncharacterized conser 97.4 0.22 4.8E-06 54.7 30.1 262 64-333 32-308 (381)
352 PF04841 Vps16_N: Vps16, N-ter 97.4 0.11 2.3E-06 57.7 26.9 222 63-321 81-324 (410)
353 COG3386 Gluconolactonase [Carb 97.3 0.16 3.4E-06 53.9 26.3 205 125-345 45-277 (307)
354 KOG2395 Protein involved in va 97.3 0.0035 7.6E-08 68.2 13.8 149 150-310 339-499 (644)
355 COG3490 Uncharacterized protei 97.3 0.07 1.5E-06 54.3 22.0 133 107-254 37-180 (366)
356 PF06977 SdiA-regulated: SdiA- 97.3 0.1 2.3E-06 53.4 23.8 223 47-308 6-247 (248)
357 PF03178 CPSF_A: CPSF A subuni 97.3 0.048 1E-06 58.4 22.6 173 167-355 3-204 (321)
358 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.02 4.4E-07 50.4 15.2 103 189-306 2-109 (111)
359 KOG3617 WD40 and TPR repeat-co 97.2 0.00084 1.8E-08 76.1 8.1 128 151-287 22-156 (1416)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.65 1.4E-05 53.3 33.0 148 167-321 272-500 (527)
361 COG0823 TolB Periplasmic compo 97.2 0.012 2.7E-07 65.1 17.3 146 61-252 236-386 (425)
362 smart00320 WD40 WD40 repeats. 97.2 0.0012 2.6E-08 44.5 5.8 39 176-214 2-40 (40)
363 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.057 1.2E-06 58.6 21.2 274 71-355 1-315 (353)
364 COG0823 TolB Periplasmic compo 97.1 0.021 4.5E-07 63.3 17.6 93 167-268 263-361 (425)
365 COG3386 Gluconolactonase [Carb 97.1 0.22 4.7E-06 52.8 24.2 207 68-287 30-263 (307)
366 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.038 8.1E-07 48.8 15.2 101 237-348 2-109 (111)
367 PF02897 Peptidase_S9_N: Proly 97.1 0.74 1.6E-05 51.0 29.9 238 65-316 126-409 (414)
368 PF05096 Glu_cyclase_2: Glutam 97.0 0.16 3.4E-06 52.1 21.6 196 52-253 32-249 (264)
369 PF02897 Peptidase_S9_N: Proly 97.0 0.61 1.3E-05 51.7 28.7 237 3-273 132-412 (414)
370 PF03178 CPSF_A: CPSF A subuni 96.9 0.12 2.6E-06 55.3 21.4 129 127-265 62-202 (321)
371 PF08553 VID27: VID27 cytoplas 96.9 0.013 2.9E-07 68.7 14.6 140 199-349 494-644 (794)
372 KOG2444 WD40 repeat protein [G 96.9 0.0008 1.7E-08 66.2 3.9 108 120-227 33-143 (238)
373 KOG3621 WD40 repeat-containing 96.9 0.12 2.7E-06 58.5 21.0 147 53-203 24-186 (726)
374 COG3391 Uncharacterized conser 96.9 0.98 2.1E-05 49.6 30.8 188 148-349 77-279 (381)
375 PF00780 CNH: CNH domain; Int 96.8 0.78 1.7E-05 47.6 29.0 191 65-275 38-265 (275)
376 PHA02713 hypothetical protein; 96.8 0.035 7.5E-07 64.1 16.7 188 76-272 305-540 (557)
377 COG3490 Uncharacterized protei 96.8 0.46 1E-05 48.6 22.2 248 54-309 59-346 (366)
378 PRK13684 Ycf48-like protein; P 96.8 1.1 2.3E-05 48.4 30.1 151 186-351 172-329 (334)
379 PF05096 Glu_cyclase_2: Glutam 96.7 0.58 1.3E-05 48.0 23.0 159 167-343 69-250 (264)
380 KOG4640 Anaphase-promoting com 96.7 0.006 1.3E-07 67.8 9.3 90 150-245 26-116 (665)
381 PF08596 Lgl_C: Lethal giant l 96.7 0.4 8.6E-06 52.8 23.3 196 152-352 93-334 (395)
382 PF14781 BBS2_N: Ciliary BBSom 96.6 0.11 2.4E-06 47.4 14.6 121 190-320 2-134 (136)
383 PHA02713 hypothetical protein; 96.5 0.17 3.6E-06 58.5 19.9 213 86-314 273-536 (557)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.47 1E-05 52.2 21.6 83 234-321 307-408 (415)
385 smart00320 WD40 WD40 repeats. 96.4 0.0082 1.8E-07 40.2 5.4 37 220-263 4-40 (40)
386 PRK13616 lipoprotein LpqB; Pro 96.4 0.29 6.3E-06 56.7 20.8 200 64-306 351-563 (591)
387 PRK13616 lipoprotein LpqB; Pro 96.4 0.16 3.4E-06 58.9 18.6 175 165-358 328-530 (591)
388 KOG1897 Damage-specific DNA bi 96.4 3.2 7E-05 49.2 30.3 285 52-352 299-612 (1096)
389 KOG2079 Vacuolar assembly/sort 96.4 0.009 1.9E-07 70.1 8.1 104 197-310 98-202 (1206)
390 KOG4441 Proteins containing BT 96.4 0.17 3.6E-06 58.5 18.6 165 167-347 350-535 (571)
391 KOG2079 Vacuolar assembly/sort 96.4 0.013 2.9E-07 68.7 9.5 106 235-348 90-200 (1206)
392 KOG2395 Protein involved in va 96.2 0.051 1.1E-06 59.6 12.4 137 200-348 348-496 (644)
393 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 3.5 7.6E-05 47.3 31.6 190 78-270 72-338 (527)
394 PRK10115 protease 2; Provision 96.1 4.5 9.7E-05 48.1 33.0 198 66-271 175-400 (686)
395 PF08149 BING4CT: BING4CT (NUC 96.0 0.0067 1.5E-07 49.5 3.1 67 380-455 11-79 (80)
396 PHA03098 kelch-like protein; P 95.9 0.34 7.4E-06 55.7 18.5 184 76-272 296-518 (534)
397 PF10647 Gmad1: Lipoprotein Lp 95.9 0.91 2E-05 46.8 19.4 157 188-356 25-198 (253)
398 PF14727 PHTB1_N: PTHB1 N-term 95.9 3.8 8.3E-05 45.3 33.0 146 4-171 34-201 (418)
399 KOG3616 Selective LIM binding 95.8 0.32 6.9E-06 55.3 16.3 68 63-136 15-84 (1636)
400 PF05694 SBP56: 56kDa selenium 95.7 1.6 3.6E-05 47.7 21.0 137 168-312 159-343 (461)
401 KOG3630 Nuclear pore complex, 95.6 0.1 2.2E-06 62.0 12.0 114 167-288 125-253 (1405)
402 PLN00033 photosystem II stabil 95.5 5.1 0.00011 44.1 30.4 147 189-350 241-396 (398)
403 PRK10115 protease 2; Provision 95.5 7.7 0.00017 46.1 28.2 209 63-320 127-354 (686)
404 KOG4441 Proteins containing BT 95.4 0.83 1.8E-05 52.9 18.8 95 167-272 397-506 (571)
405 KOG3973 Uncharacterized conser 95.2 0.013 2.8E-07 60.4 2.8 23 680-702 357-382 (465)
406 PF12894 Apc4_WD40: Anaphase-p 95.1 0.055 1.2E-06 40.2 5.3 33 234-268 11-43 (47)
407 KOG2444 WD40 repeat protein [G 95.1 0.06 1.3E-06 53.2 7.1 106 198-311 70-177 (238)
408 PF05918 API5: Apoptosis inhib 95.0 0.0066 1.4E-07 68.4 0.0 7 695-701 546-552 (556)
409 PF12894 Apc4_WD40: Anaphase-p 95.0 0.074 1.6E-06 39.5 5.5 39 54-93 3-41 (47)
410 PF10168 Nup88: Nuclear pore c 95.0 0.53 1.1E-05 55.6 15.5 78 188-265 86-179 (717)
411 COG5638 Uncharacterized conser 94.8 0.026 5.7E-07 59.3 3.9 34 501-534 538-571 (622)
412 TIGR03074 PQQ_membr_DH membran 94.7 5.6 0.00012 47.6 23.4 117 156-273 194-352 (764)
413 PHA02790 Kelch-like protein; P 94.6 1.5 3.3E-05 49.7 18.0 182 74-269 271-474 (480)
414 PF08728 CRT10: CRT10; InterP 94.6 1.1 2.5E-05 52.1 16.6 115 188-310 102-245 (717)
415 KOG2280 Vacuolar assembly/sort 94.3 4.7 0.0001 46.6 20.2 194 84-287 63-268 (829)
416 COG3204 Uncharacterized protei 94.3 7.7 0.00017 40.3 21.8 170 147-320 88-271 (316)
417 PF05694 SBP56: 56kDa selenium 94.3 10 0.00022 41.7 23.0 192 159-354 90-343 (461)
418 COG3823 Glutamine cyclotransfe 94.3 2.2 4.8E-05 41.9 15.1 197 54-253 35-247 (262)
419 PHA03098 kelch-like protein; P 94.2 2.3 5E-05 48.9 18.5 98 167-272 359-471 (534)
420 TIGR03074 PQQ_membr_DH membran 94.1 16 0.00034 43.9 25.2 158 158-321 262-487 (764)
421 PF14583 Pectate_lyase22: Olig 93.7 12 0.00027 40.6 25.4 221 113-345 43-304 (386)
422 KOG4499 Ca2+-binding protein R 93.4 9.5 0.00021 38.3 18.7 97 187-287 158-262 (310)
423 PHA02790 Kelch-like protein; P 93.3 3.5 7.6E-05 46.8 17.6 104 155-272 317-430 (480)
424 KOG2280 Vacuolar assembly/sort 93.1 4.4 9.5E-05 46.9 17.2 170 64-245 85-270 (829)
425 PF15390 DUF4613: Domain of un 93.0 4.7 0.0001 45.5 17.0 112 147-266 59-187 (671)
426 KOG2063 Vacuolar assembly/sort 93.0 4.1 8.9E-05 48.8 17.7 262 69-353 21-308 (877)
427 KOG3630 Nuclear pore complex, 93.0 1 2.2E-05 53.9 12.4 147 188-340 102-260 (1405)
428 PF12234 Rav1p_C: RAVE protein 92.9 1.5 3.3E-05 50.6 13.7 122 65-216 32-156 (631)
429 COG3204 Uncharacterized protei 92.9 6.5 0.00014 40.8 16.7 187 45-266 68-264 (316)
430 KOG4499 Ca2+-binding protein R 92.8 5.9 0.00013 39.7 15.5 89 149-243 162-262 (310)
431 KOG2318 Uncharacterized conser 92.6 0.055 1.2E-06 59.7 1.6 31 499-529 560-590 (650)
432 KOG2377 Uncharacterized conser 92.6 3.5 7.5E-05 45.0 14.7 104 234-343 66-173 (657)
433 PF10313 DUF2415: Uncharacteri 92.5 0.37 8.1E-06 34.8 5.2 32 235-266 1-34 (43)
434 COG3823 Glutamine cyclotransfe 92.4 5.5 0.00012 39.3 14.6 159 166-341 68-246 (262)
435 KOG4460 Nuclear pore complex, 92.2 2.8 6E-05 46.5 13.7 102 188-319 105-206 (741)
436 COG5290 IkappaB kinase complex 92.1 1.9 4.1E-05 49.8 12.7 219 56-288 70-346 (1243)
437 PF10433 MMS1_N: Mono-function 92.0 26 0.00057 39.9 30.3 239 64-310 45-341 (504)
438 COG5167 VID27 Protein involved 91.9 2.5 5.5E-05 46.6 12.8 151 149-311 472-632 (776)
439 PF12234 Rav1p_C: RAVE protein 91.7 3.8 8.3E-05 47.4 15.0 112 235-350 30-153 (631)
440 PF02333 Phytase: Phytase; In 91.7 23 0.00051 38.6 24.4 194 110-312 58-291 (381)
441 PF14781 BBS2_N: Ciliary BBSom 91.6 5.6 0.00012 36.4 13.0 92 238-333 2-102 (136)
442 TIGR02604 Piru_Ver_Nterm putat 91.6 10 0.00022 41.4 17.9 143 188-344 15-204 (367)
443 COG1520 FOG: WD40-like repeat 91.5 15 0.00032 40.1 19.1 150 158-319 70-225 (370)
444 PF15390 DUF4613: Domain of un 91.1 18 0.00039 41.1 18.7 146 187-343 57-221 (671)
445 PF11635 Med16: Mediator compl 90.4 48 0.001 40.0 23.7 248 104-356 10-355 (753)
446 KOG1916 Nuclear protein, conta 90.2 0.082 1.8E-06 61.2 -0.2 201 71-311 192-423 (1283)
447 PF14761 HPS3_N: Hermansky-Pud 90.0 19 0.00042 35.8 16.1 144 158-310 30-213 (215)
448 TIGR03548 mutarot_permut cycli 90.0 29 0.00064 36.9 21.4 53 166-219 139-197 (323)
449 PF05918 API5: Apoptosis inhib 90.0 0.092 2E-06 59.4 0.0 19 680-699 535-554 (556)
450 PF08728 CRT10: CRT10; InterP 89.8 9.1 0.0002 44.9 15.7 102 159-265 117-246 (717)
451 PF12768 Rax2: Cortical protei 89.7 29 0.00062 36.4 18.2 122 166-289 16-147 (281)
452 PF12768 Rax2: Cortical protei 89.6 5.6 0.00012 41.6 12.8 118 208-334 16-147 (281)
453 PF14779 BBS1: Ciliary BBSome 89.5 28 0.0006 35.8 18.3 69 187-262 177-255 (257)
454 PF10214 Rrn6: RNA polymerase 89.1 36 0.00079 41.1 21.1 174 185-367 78-294 (765)
455 COG4907 Predicted membrane pro 88.9 0.31 6.7E-06 52.5 2.9 27 675-702 569-595 (595)
456 PF07569 Hira: TUP1-like enhan 88.7 3 6.5E-05 42.0 9.8 79 194-274 18-104 (219)
457 COG1520 FOG: WD40-like repeat 88.6 40 0.00087 36.6 29.6 196 72-275 67-278 (370)
458 KOG1916 Nuclear protein, conta 88.3 0.58 1.3E-05 54.6 4.8 162 145-316 133-328 (1283)
459 KOG3293 Small nuclear ribonucl 88.2 0.44 9.5E-06 41.8 2.9 16 584-599 13-28 (134)
460 PF07569 Hira: TUP1-like enhan 87.6 3.9 8.5E-05 41.2 9.9 70 235-311 13-95 (219)
461 COG5167 VID27 Protein involved 87.6 5.3 0.00012 44.2 11.2 144 199-353 480-632 (776)
462 TIGR02604 Piru_Ver_Nterm putat 86.6 37 0.0008 37.0 17.7 59 188-254 125-202 (367)
463 PLN02193 nitrile-specifier pro 86.5 60 0.0013 36.7 19.8 102 166-272 244-358 (470)
464 PF14761 HPS3_N: Hermansky-Pud 86.4 21 0.00045 35.6 13.7 101 200-312 30-164 (215)
465 PF10313 DUF2415: Uncharacteri 86.3 2.8 6.1E-05 30.4 5.6 31 187-217 1-34 (43)
466 KOG1983 Tomosyn and related SN 85.7 13 0.00029 45.9 14.7 39 56-95 29-67 (993)
467 PF14870 PSII_BNR: Photosynthe 85.5 53 0.0012 34.8 26.7 190 106-308 105-301 (302)
468 PF10168 Nup88: Nuclear pore c 85.4 90 0.0019 37.3 22.3 71 63-135 85-179 (717)
469 KOG2247 WD40 repeat-containing 85.1 0.16 3.4E-06 55.4 -1.8 138 108-256 38-179 (615)
470 TIGR01063 gyrA DNA gyrase, A s 84.8 1E+02 0.0022 37.4 25.0 231 116-355 495-771 (800)
471 TIGR03118 PEPCTERM_chp_1 conse 84.7 57 0.0012 34.4 24.2 174 159-333 103-307 (336)
472 PF07676 PD40: WD40-like Beta 84.6 3.4 7.4E-05 28.8 5.6 30 61-90 7-38 (39)
473 COG5290 IkappaB kinase complex 84.6 38 0.00083 39.8 16.3 91 238-335 250-348 (1243)
474 PF07250 Glyoxal_oxid_N: Glyox 83.5 31 0.00068 35.2 14.1 148 169-325 49-211 (243)
475 PLN02153 epithiospecifier prot 82.9 72 0.0016 34.2 21.6 52 167-219 160-228 (341)
476 KOG2247 WD40 repeat-containing 82.7 0.15 3.1E-06 55.7 -3.2 144 150-308 40-185 (615)
477 KOG1900 Nuclear pore complex, 82.7 35 0.00077 42.3 16.0 217 54-308 70-335 (1311)
478 PF08801 Nucleoporin_N: Nup133 82.4 52 0.0011 36.5 16.8 29 281-312 192-220 (422)
479 TIGR03548 mutarot_permut cycli 81.7 66 0.0014 34.1 16.7 70 197-272 123-201 (323)
480 KOG0921 Dosage compensation co 81.6 1.2 2.5E-05 52.4 3.2 11 366-376 781-791 (1282)
481 PF05935 Arylsulfotrans: Aryls 81.6 58 0.0013 36.9 16.9 154 156-325 113-315 (477)
482 KOG0783 Uncharacterized conser 81.6 39 0.00085 39.9 15.0 53 248-305 399-452 (1267)
483 PF12657 TFIIIC_delta: Transcr 81.1 7.5 0.00016 37.5 8.3 31 187-217 86-122 (173)
484 KOG1896 mRNA cleavage and poly 80.6 1.6E+02 0.0034 36.6 26.4 142 199-352 1047-1212(1366)
485 PF10647 Gmad1: Lipoprotein Lp 80.0 76 0.0016 32.6 22.2 148 108-257 26-187 (253)
486 PF12657 TFIIIC_delta: Transcr 79.6 11 0.00024 36.3 8.9 31 235-266 86-122 (173)
487 PRK13684 Ycf48-like protein; P 79.6 94 0.002 33.4 26.3 107 234-348 172-283 (334)
488 PRK05560 DNA gyrase subunit A; 79.5 1.6E+02 0.0034 35.9 26.6 230 116-355 497-774 (805)
489 PRK13615 lipoprotein LpqB; Pro 78.9 1.3E+02 0.0029 34.7 18.6 157 190-360 337-507 (557)
490 PF07995 GSDH: Glucose / Sorbo 78.7 28 0.0006 37.4 12.6 108 236-346 3-136 (331)
491 PF11635 Med16: Mediator compl 78.4 1.4E+02 0.0031 36.0 19.5 73 187-260 260-345 (753)
492 KOG1898 Splicing factor 3b, su 77.8 1.2E+02 0.0026 37.1 17.7 107 240-355 939-1050(1205)
493 KOG2377 Uncharacterized conser 77.8 1.2E+02 0.0026 33.6 18.3 79 61-143 65-148 (657)
494 smart00036 CNH Domain found in 77.5 1E+02 0.0022 32.6 28.8 38 278-321 243-280 (302)
495 COG4590 ABC-type uncharacteriz 77.5 18 0.00038 39.7 10.1 152 108-269 223-390 (733)
496 PF14779 BBS1: Ciliary BBSome 77.4 92 0.002 32.1 18.3 55 159-213 198-255 (257)
497 KOG3262 H/ACA small nucleolar 77.2 2.1 4.5E-05 40.8 2.8 16 587-602 105-122 (215)
498 COG4590 ABC-type uncharacteriz 76.8 7.2 0.00016 42.6 7.0 176 180-364 214-397 (733)
499 PF13449 Phytase-like: Esteras 76.6 1.1E+02 0.0024 32.7 18.0 144 149-298 24-230 (326)
500 TIGR03606 non_repeat_PQQ dehyd 76.1 52 0.0011 36.9 13.9 107 238-345 33-167 (454)
No 1
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.4e-136 Score=1067.19 Aligned_cols=522 Identities=51% Similarity=0.910 Sum_probs=493.6
Q ss_pred EEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEE
Q 005325 11 MKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVY 90 (702)
Q Consensus 11 l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vw 90 (702)
|+|++.|+|+||+||+| ++||+|++.+++|.|+++.++++||+|||+|+||++++.|.+||||+|++|||.|.++|+||
T Consensus 1 lkvts~NdVkiYnvS~~-kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvy 79 (703)
T KOG2321|consen 1 LKVTSVNDVKIYNVSAG-KSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVY 79 (703)
T ss_pred CcccccCceEEEEeecC-CCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEE
Confidence 57899999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEE
Q 005325 91 ELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYR 170 (702)
Q Consensus 91 dl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~v 170 (702)
|+.+++++|++|++++++.+.+++.|+++++++..|++|.+|..+|.|+.+++|.++++|+|+.++|+|++++++..||+
T Consensus 80 dlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYR 159 (703)
T KOG2321|consen 80 DLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYR 159 (703)
T ss_pred EcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCC-----CCCCeEEEEEcCC
Q 005325 171 INLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGD-----ADQEVTALEFDSN 245 (702)
Q Consensus 171 wdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~-----~~~~Vtslafspd 245 (702)
+||++|+++.+|....+.+++|.+++.+.+|++|+.+|.|.+||+|+.+.+.++........ ....|++|.|+.+
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD 239 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988754322 3355999999988
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCc
Q 005325 246 GGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGK 325 (702)
Q Consensus 246 ~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~ 325 (702)
|..+++|+++|.|.|||||+.+|+.+++|.+..||..+.|.+ .+++..|++.+...++|||..+|+++.++++ ...
T Consensus 240 -gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~--~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~ 315 (703)
T KOG2321|consen 240 -GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD--TDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSD 315 (703)
T ss_pred -ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc--cCCCceEEecchHHhhhcccccCCceeeccc-cCC
Confidence 999999999999999999999999999999999999999998 4567899999999999999999999999999 888
Q ss_pred eeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCcccccchhhhcCCccccccCccccCHHHHhhcCCCcccCccc
Q 005325 326 INDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESMTEELEEGGQTTIYDNYKFLTREDLEKLNLTSLIGTNL 405 (702)
Q Consensus 326 I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~lteelee~~~~~~yd~ykfvt~~el~~l~l~~liGt~~ 405 (702)
||++|+.|+++++++|.+++.|..||||+|||||+|||||+||||||||.+.++|||+|+|||++||+.|||+|||||++
T Consensus 316 lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLdnlTEElEE~~~~TVYDnYkFvTkkdL~~LgLthLiGt~v 395 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSFLDNLTEELEENPETTVYDNYKFVTKKDLEKLGLTHLIGTNV 395 (703)
T ss_pred cCceeeecCCceEEEecCCCcceeEEccccCCCchhhhHHHhHHHHHhcCCccccccceeeeeHHHHHhcCCcceeCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHhHHHHHhhcCCchhHHHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHHhcccCCCCCc
Q 005325 406 LRAYMHGFFVDYRLYKKAKALVDPFAYESYIEEQKQKKLEQQRSSRITLKRKLPKVNRGLAARLLENEEAENEKKDVDDD 485 (702)
Q Consensus 406 l~~ymhgy~~~~~ly~~~~~~~~p~~~~~~r~~~i~~~~~~~~~~ri~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~ 485 (702)
||+||||||||.+||+||++++|||+|++||+++|+++||++|++||+.+.++||||++||.||..++| .
T Consensus 396 LrAyMHGyFid~~LY~Ka~~v~~PFAye~yr~~kir~~iE~eR~sri~~k~klPkVNk~LA~rl~dE~e--n-------- 465 (703)
T KOG2321|consen 396 LRAYMHGYFIDARLYNKAKLVVNPFAYEDYRERKIREKIEEERESRIQKKRKLPKVNKELAARLHDEEE--N-------- 465 (703)
T ss_pred HHHHhhhhhhhHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHhhHhhh--h--------
Confidence 999999999999999999999999999999999999999999999999998999999999999996532 1
Q ss_pred hHHHHHHHhhhccccCCCCChhhhhccCCCCccccCCCHHHHHhCCCchh---cchhhhhhccCCccc
Q 005325 486 DENKKKLKKKKALSSDVFKDERFAAMFENKDYQIDEFSQEYIALHPMATQ---KQSSLVEEHFEPVME 550 (702)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~d~rf~~~f~~~~f~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 550 (702)
+.++||+.+.++++|+|+||+.|||||||||||+|+||++|||++++ |++..+.+++++++.
T Consensus 466 ---K~~~kk~~k~~~siLtDdRFk~mFen~dFeVDeds~ey~~l~pv~s~~~~k~~kelr~~~~A~es 530 (703)
T KOG2321|consen 466 ---KLAKKKKVKKAPSILTDDRFKSMFENEDFEVDEDSEEYRLLAPVASKMSKKQPKELRELLEAEES 530 (703)
T ss_pred ---hhhhhhccccCCcccchhHHHHhccCcccccCccHHHHhhhchhhhhhhccchhhHHHhhhhhhh
Confidence 22335555889999999999999999999999999999999999864 566666666665443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-37 Score=309.30 Aligned_cols=309 Identities=13% Similarity=0.183 Sum_probs=263.9
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||||.+ +++.+-+.+|++|++... . |.+.. -.|..-|.||+|||||+. ||+|
T Consensus 123 fsp~g~~-l~tGsGD~TvR~WD~~Te-T--p~~t~----------------------KgH~~WVlcvawsPDgk~-iASG 175 (480)
T KOG0271|consen 123 FSPTGSR-LVTGSGDTTVRLWDLDTE-T--PLFTC----------------------KGHKNWVLCVAWSPDGKK-IASG 175 (480)
T ss_pred ecCCCce-EEecCCCceEEeeccCCC-C--cceee----------------------cCCccEEEEEEECCCcch-hhcc
Confidence 4788887 477788899999999876 2 22221 135677999999999999 9999
Q ss_pred ecCCcEEEEEcCCce---EEEeeecCCceEEEEE----EcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEec
Q 005325 82 IYPPQVKVYELRQLS---LKFERHLDSEIINFEV----LADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNS 154 (702)
Q Consensus 82 s~dg~I~vwdl~~~~---~~~~~h~~~~vv~~~~----ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~ 154 (702)
+.+|+|++||..+.. -.+.+| ...|+.+.| +.|...+||+++.|++|+||++........+..+...+.+..
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH-~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGH-KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCc-ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 999999999987732 367777 444666655 346778999999999999999997666666777777999999
Q ss_pred CCCc--EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEc-----------CCCC----------------------
Q 005325 155 WSCD--LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRS-----------KLHG---------------------- 199 (702)
Q Consensus 155 ~s~~--llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~s-----------p~~~---------------------- 199 (702)
|+.+ +++++.|.+|.+|+...|.+.+.+++|...||.|+++ |.+.
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 9866 8889999999999999999999999999999999887 2233
Q ss_pred ---EEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eee
Q 005325 200 ---LIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKD 274 (702)
Q Consensus 200 ---llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~ 274 (702)
.|++|++|.++.+|++.. .+++..+..| ..-|+.+.|||| +.++|+++.|..|+|||-++++.+. +.+
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH------q~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGH------QALVNHVSFSPD-GRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhch------hhheeeEEECCC-ccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 499999999999999874 5588888888 789999999999 9999999999999999999999887 777
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
| -.+|..++|+. +.+||+++ .|.+++||++.+.++...+++|...|.++.|+|++..+++++.|..+.+|.
T Consensus 408 H--v~~VYqvawsa----DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 408 H--VAAVYQVAWSA----DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred c--cceeEEEEecc----CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8 57999999995 66666665 699999999999999999999999999999999999999999999888873
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=312.14 Aligned_cols=276 Identities=18% Similarity=0.197 Sum_probs=244.2
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCc
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~ 137 (702)
..++..+.||+|+.. ||||+.+|.++||+..+ +..+|.+|... +. .+.|+|. +..||+|+.||++++|...+.
T Consensus 175 ~rPis~~~fS~ds~~-laT~swsG~~kvW~~~~~~~~~~l~gH~~~-v~-~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKH-LATGSWSGLVKVWSVPQCNLLQTLRGHTSR-VG-AAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CCcceeeEeecCCCe-EEEeecCCceeEeecCCcceeEEEeccccc-ee-eEEEccCCCccceeeeccCCceeeeccCCC
Confidence 567889999999999 99999999999999998 44588888544 44 4445554 678999999999999998875
Q ss_pred eEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 138 HYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 138 ~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
.....+..+.. .++|+|.+..|.+++.|.+-.+||+.++..+....+|+..|.+|+|+|+|.+++||+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 44433433322 899999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
+|++.++..|..| ..+|.+|+|+|+ |..||+|+.|++++|||||...++. +..| ..-|+.++|+| ..+
T Consensus 332 lRtgr~im~L~gH------~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p--~~g 400 (459)
T KOG0272|consen 332 LRTGRCIMFLAGH------IKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSP--QEG 400 (459)
T ss_pred cccCcEEEEeccc------ccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecc--cCC
Confidence 9999999999998 699999999999 9999999999999999999988777 6777 67899999998 234
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
.++++++-|++++||...++.++.++.+|.+.|.++..+|++..+++++.|..+..|+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4455555799999999999999999999999999999999999999999999999985
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=295.99 Aligned_cols=278 Identities=17% Similarity=0.248 Sum_probs=237.7
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cc
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GK 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~ 137 (702)
|.++|.|++|+|+|.+ ||||+.|.++++||+.+ ....+.+|.+. +.++.++|||..||+++.||+|.+|++. |.
T Consensus 114 H~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W--VlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFTCKGHKNW--VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcceeecCCccE--EEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 6789999999999999 99999999999999988 44567778655 8888899999999999999999999987 44
Q ss_pred eEEEecCCCcc---ceEEecC-----CCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCe
Q 005325 138 HYSLRIPRMGR---DMAYNSW-----SCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGA 209 (702)
Q Consensus 138 ~~~~~i~~~~~---~l~~~~~-----s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~ 209 (702)
.+--.++.+.. ++++.|. ...+++++.||.|.+||+..++++..+.+|+.+|+||.|--+ .+|++|+.|++
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~Drt 269 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRT 269 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCce
Confidence 44333443333 5666543 334788889999999999999999999999999999999754 59999999999
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEc-----------CC------------------------CCCEEEEEe
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFD-----------SN------------------------GGFLMGVGS 254 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs-----------pd------------------------~g~~LasGs 254 (702)
|++|+...+.++..+..| ...|+.|+.+ |. .+..|++|+
T Consensus 270 Ikvw~a~dG~~~r~lkGH------ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 270 IKVWRALDGKLCRELKGH------AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred EEEEEccchhHHHhhccc------chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 999999999999999998 6788888776 33 133599999
Q ss_pred CCCeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEE
Q 005325 255 STGKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 255 ~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
.|+++.+|+-...+ |+. +.+| ..-|+.+.|+| ++.+++++ -|+.|++||..+|+.+.++.+|-+.|..|+|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgH--q~lVn~V~fSP----d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGH--QALVNHVSFSP----DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred CCceEEEecccccccchhhhhch--hhheeeEEECC----CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 99999999987644 665 6777 67899999999 66666665 5999999999999999999999999999999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.|+.+|++++.|.++.+|.+..
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeee
Confidence 99999999999999999998764
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=269.03 Aligned_cols=279 Identities=15% Similarity=0.144 Sum_probs=239.1
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC---
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG--- 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g--- 136 (702)
.|-..|.++.|++|.++ |++++.||.+.|||..+......-...+..|-.++++|.++.+|.++-|+...||++..
T Consensus 53 GH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred ccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 36788999999999999 89999999999999887443333333444566777999999999999999999998762
Q ss_pred --ceEEEe-cCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCe
Q 005325 137 --KHYSLR-IPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGA 209 (702)
Q Consensus 137 --~~~~~~-i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~ 209 (702)
.....+ ++.+.. +..|.. ...|++++.|.++.+||+++|+.+..|.+|.+.|.+|+++| +++.+++|+.|++
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence 222222 222222 444444 66699999999999999999999999999999999999999 8899999999999
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc-CCCCeEEEEEee
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM-FDSPIVDIKWHQ 288 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~-~~~~I~sl~fsp 288 (702)
.+|||+|.+.++++|..| ...|++|+|.|+ |.-|++|+.|+++++||+|..+.+.++.|. ...+|++++|+-
T Consensus 211 aklWD~R~~~c~qtF~gh------esDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGH------ESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeeeeccCcceeEeeccc------ccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999999999999999 799999999999 999999999999999999998888765552 356899999995
Q ss_pred ccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 289 SINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 289 ~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
.+..|+++.+|.++.|||.-.++.+..+.+|...|.++..+|++-.+++++-|..|++|
T Consensus 284 ---SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 284 ---SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ---cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 34444555689999999999999999999999999999999999999999999999998
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-31 Score=259.21 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=236.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
.|+..|+.++..+.+.-++++++.|..|.+|++.. ....+.+|.. .+.-+.+++||++.++++.|+++++|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--EecceEEccCCceEEeccccceEEEE
Confidence 38899999999999888899999999999999976 2335667633 36777799999999999999999999
Q ss_pred ecCCceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCC--CCEEEEEEc
Q 005325 133 AKYGKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKL--HGLIACGGE 206 (702)
Q Consensus 133 ~~~g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~--~~llasgs~ 206 (702)
|+.+.....++..+.. ++++.+.+..+++++.|.+|.+||.-.......... |...|+|+.|+|+ ..+|++++.
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 9995444444444444 677777888899999999999999876554443332 2789999999999 589999999
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKW 286 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~f 286 (702)
|++|++||+++.+....+..| ...|+.+++||| |..+++|+.||.+.+||++.++.+...+| ..+|.+++|
T Consensus 171 DktvKvWnl~~~~l~~~~~gh------~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~f 241 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGH------SGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCF 241 (315)
T ss_pred CceEEEEccCCcchhhccccc------cccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEeccC--CCeEeeEEe
Confidence 999999999999888888877 799999999999 99999999999999999999999988888 689999999
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC---------CCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT---------AGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h---------~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+| ..+.|+.+.+..|+|||+.++.++..+... .....+++|++++..|+.+-.++.|.+|.+.
T Consensus 242 sp----nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 242 SP----NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cC----CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 98 788888888888999999998887766431 1234578999999999999999999999764
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=278.50 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=230.4
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC-CCEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD-GEFLIV 79 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD-G~~lla 79 (702)
.|.|+.- +++.+.++.+|||++... .+++.| .|.+.+.++.|+|. ...-||
T Consensus 183 fS~ds~~-laT~swsG~~kvW~~~~~--------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 183 FSRDSKH-LATGSWSGLVKVWSVPQC--------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred eecCCCe-EEEeecCCceeEeecCCc--------------------------ceeEEEeccccceeeEEEccCCCcccee
Confidence 3567774 688899999999999887 334544 58899999999998 343499
Q ss_pred EEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec---CCCccceEEec
Q 005325 80 SGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI---PRMGRDMAYNS 154 (702)
Q Consensus 80 tGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i---~~~~~~l~~~~ 154 (702)
|++.||+|++|++.+ ....+++|..- +.-+.|+|+|.+|+++|.|.+-++||+......+.. .....+++|++
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~R--Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLAR--VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhh--heeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence 999999999999988 44478888644 667779999999999999999999999843332222 23334889999
Q ss_pred CCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCC
Q 005325 155 WSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDAD 234 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~ 234 (702)
.+.-+++++.|..-.+||+.+|+++..|.+|...|.+|+|+|+|..||||+.|++++|||++..+.+.++..| .
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH------~ 387 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH------S 387 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc------c
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
.-|+.|+|+|..|.+|++++.|++++||..++..|+. +.+| ...|.++.++| ++..+++++-|+++++|.
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~---d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISP---DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEecc---CCceEEEeccCceeeecc
Confidence 8999999999669999999999999999999999988 7888 78999999997 455555666799999995
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.2e-31 Score=273.21 Aligned_cols=277 Identities=17% Similarity=0.213 Sum_probs=235.6
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHY 139 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~ 139 (702)
-.|+.|.|+|+|+. |+||++.|.+.+|+...... ....| ++ +|..+.+++++.+++++..++.|++|...- ...
T Consensus 97 c~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnFEtilQaH-Ds-~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNFETILQAH-DS-PVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEEEcCCCce-eEeecccccEEEecCceeeHHHHhhhh-cc-cceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 46889999999999 89999999999999866433 23344 44 455566777889999999999999997762 222
Q ss_pred EEe-cC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 140 SLR-IP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 140 ~~~-i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
.+. .. ...+++++.+....+++|+.|+.|.+||....+....+.+|.-.|.|++|+|...+||+|+.|..|++||+++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 221 12 3456999999777899999999999999999888888999999999999999999999999999999999999
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCe
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPK 296 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~l 296 (702)
++++.++..| ...|..+.|+|+ +.+|++++.|..+++||+|+-+.+. +.+| ...|+++.|||. ..+.+
T Consensus 254 g~cl~tlh~H------KntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~--~~~lf 322 (464)
T KOG0284|consen 254 GSCLATLHGH------KNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPL--NESLF 322 (464)
T ss_pred cchhhhhhhc------cceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccc--cccce
Confidence 9999999988 799999999999 8999999999999999999766555 6778 789999999993 34555
Q ss_pred EEEeCCCEEEEEeCCCCceeEEec-CCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 297 LITTDNHIVRIWDPETGESMTSIE-PTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 297 l~ss~Dg~V~IWd~~tg~~l~~i~-~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
.+++.|+.|..|.+...+++..++ +|...|++++|+|-+.+|++|+.|..+..|.-+
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 556689999999999767776664 588899999999999999999999999999644
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=7.7e-30 Score=264.23 Aligned_cols=277 Identities=15% Similarity=0.256 Sum_probs=233.0
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G 136 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g 136 (702)
..-...|++++|+.+|.. ||||+++|.++||+... +...+..| ..+|+.+- ++..|++|++++.|+++.+||.. |
T Consensus 232 ~~~nkdVT~L~Wn~~G~~-LatG~~~G~~riw~~~G~l~~tl~~H-kgPI~slK-Wnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTL-LATGSEDGEARIWNKDGNLISTLGQH-KGPIFSLK-WNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCccCCcceEEecCCCCe-EEEeecCcEEEEEecCchhhhhhhcc-CCceEEEE-EcCCCCEEEeccCCccEEEEeccCc
Confidence 334567999999999999 99999999999999987 55566666 55555555 66788999999999999999986 4
Q ss_pred ceEE-EecCCCc-cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 137 KHYS-LRIPRMG-RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 137 ~~~~-~~i~~~~-~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
..+. +.+...+ .++.+.. +..+++++.++.|+++-+...+++.++.+|.+.|++|.|+|.+.+|++++.|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 3332 3233322 2444433 23478888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCC--------CCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEE
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNG--------GFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIK 285 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~--------g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~ 285 (702)
.....++..|..| ...|..+.|+|.+ +..|++++.|++|++||+..+.|++ +..| ..||.+++
T Consensus 388 ~~~~~~~~~l~~H------skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysva 459 (524)
T KOG0273|consen 388 MGQSNSVHDLQAH------SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVA 459 (524)
T ss_pred cCCCcchhhhhhh------ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEE
Confidence 9988899999888 6899999999862 4579999999999999999999998 5578 78999999
Q ss_pred EeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 286 WHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 286 fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
|+| ++.+++++ -|+.|.||++.+++++.+... .+.|..+||+.++..|..+-.++.+.+..+
T Consensus 460 fS~----~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 460 FSP----NGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ecC----CCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 998 55555555 699999999999999999999 888999999999999999999998887654
No 10
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=255.15 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=242.2
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|.+++.+|+.++ +|||+.|..-.+|++.+ ....+.+|.++ |.++.|+.||.+||++..+|.|.||.....
T Consensus 62 ~H~~svFavsl~P~~~l-~aTGGgDD~AflW~~~~ge~~~eltgHKDS--Vt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNL-VATGGGDDLAFLWDISTGEFAGELTGHKDS--VTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred hcCCceEEEEeCCCCce-EEecCCCceEEEEEccCCcceeEecCCCCc--eEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 58999999999997776 99999999999999998 45577888888 888999999999999999999999998865
Q ss_pred eEEEecCCCccceEEecCCC---cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSC---DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~---~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
.....+......|.|..|.+ -|++++.||.|+.|.+..+...+.+.+|..+++|=.|.|+|..+++|..||+|++||
T Consensus 139 ~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 55555544555555555444 488899999999999999888899999999999999999999999999999999999
Q ss_pred CCCCcceeEEeccc----CC---------------------------------C--------CCCCCeEEEEE---cCCC
Q 005325 215 MRMRSSAARINAVA----PA---------------------------------G--------DADQEVTALEF---DSNG 246 (702)
Q Consensus 215 ~~t~~~v~~l~~~~----~~---------------------------------~--------~~~~~Vtslaf---spd~ 246 (702)
+.+++++..+.... +. . .+...+.||.| +..
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~- 297 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK- 297 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc-
Confidence 99999888887211 00 0 11222333333 333
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCce
Q 005325 247 GFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKI 326 (702)
Q Consensus 247 g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I 326 (702)
-.++|+|+-||+|.|||+...++-+...| ..+|+.+.|.+ ..++++++.+|.|++||.++|.++..+.+|...|
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~h--e~~V~~l~w~~----t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~I 371 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRHICEH--EDGVTKLKWLN----TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGI 371 (399)
T ss_pred cchhhcccccceEEEEecccchhheeccC--CCceEEEEEcC----cchheeeccCceEEeeeccccceEEEEecCchhe
Confidence 44688999999999999999888888888 67899999985 6788899999999999999999999999999999
Q ss_pred eEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 327 NDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 327 ~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+++++|+..+++++++|....+|.+|.
T Consensus 372 l~f~ls~~~~~vvT~s~D~~a~VF~v~~ 399 (399)
T KOG0296|consen 372 LDFALSPQKRLVVTVSDDNTALVFEVPN 399 (399)
T ss_pred eEEEEcCCCcEEEEecCCCeEEEEecCC
Confidence 9999999999999999999999998873
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.4e-28 Score=250.43 Aligned_cols=274 Identities=19% Similarity=0.278 Sum_probs=229.2
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|+..|++++|+|++++ |++|+.++.|.+|++.+.. ..+..|.. .+..+.+++++..|++++.|+.|.+|+....
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEEEEecCCc--ceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 47889999999999999 8888899999999998743 33444432 2445567778789999999999999999852
Q ss_pred --eEEEecCC-CccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 138 --HYSLRIPR-MGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 138 --~~~~~i~~-~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
...+..+. ...++.+.+.. .+++++. ++.|.+||+.+++.+..+..|...|++++|+|++.++++++.||.|.+|
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 22222222 23366666663 4555444 9999999999999999999999999999999999999998889999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-eccCCCCeEEEEEeeccCC
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK-DHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~-~h~~~~~I~sl~fsp~~~~ 292 (702)
|+++++.+..+..+ ...|++++|+|+ +..|++++.+|.|.+||++.+.++... .| ..+|.+++|+|
T Consensus 163 d~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~---- 229 (289)
T cd00200 163 DLRTGKCVATLTGH------TGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSP---- 229 (289)
T ss_pred EccccccceeEecC------ccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcC----
Confidence 99998888888876 579999999999 889999999999999999998877744 66 56999999997
Q ss_pred CCCeEEEeC-CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 293 ERPKLITTD-NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 293 ~~~ll~ss~-Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
++.+++++. ++.|++|++.++.++..+..|...|.+++|+|++.+|++++.++.+.+|
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 467777775 9999999999999999999999999999999999999999999999988
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=235.41 Aligned_cols=290 Identities=11% Similarity=0.137 Sum_probs=237.1
Q ss_pred CcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCC-CceeEEEECCCCCEEEEEEecCC
Q 005325 7 EGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFE-TATTKIRETPDGEFLIVSGIYPP 85 (702)
Q Consensus 7 ~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~-~~v~~i~~SpDG~~llatGs~dg 85 (702)
.-++++++.+.+|++|...+| -.+..+.|+ +.|+.+.++||+++ ||++++ .
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG--------------------------~C~rTiqh~dsqVNrLeiTpdk~~-LAaa~~-q 61 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTG--------------------------ICSRTIQHPDSQVNRLEITPDKKD-LAAAGN-Q 61 (311)
T ss_pred ceEEEeccCcceeeeeehhcC--------------------------eEEEEEecCccceeeEEEcCCcch-hhhccC-C
Confidence 345677789999999999999 123334444 56999999999999 676664 6
Q ss_pred cEEEEEcCC----ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC--ceEEEecCCCccceEEecCCCcE
Q 005325 86 QVKVYELRQ----LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSCDL 159 (702)
Q Consensus 86 ~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~~l 159 (702)
.|++||+++ ..+.|+.|... +..+-|..+|..+++++.||+++||++.. ....+..+....++..+|....|
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCc--eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceE
Confidence 899999987 45688888666 88888999999999999999999999984 34445566667799999999999
Q ss_pred EEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
+++..++.|++||+....+...+.. ....|.++.+.|+|.+++.+..-|+.++|++-+.+....|..-.....|...|.
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 9999999999999998877665533 335799999999999999999999999999987654333333223334489999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCC-eE-EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLRSS-YP-IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlrs~-~~-l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
.+.+||+ +.+||++++|.+|+||++... +. +.+.+| ...++..+|+. ++.++++++.|+.+++|++..++.+
T Consensus 220 ~C~lSPd-~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~---dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 220 RCLLSPD-VKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSA---DGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EEEECCC-CcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeecc---CccEEEecCCCCceeecccccCcee
Confidence 9999999 999999999999999999887 22 235667 57999999994 7777888888999999999999999
Q ss_pred EEecCCCCceeEEEEE
Q 005325 317 TSIEPTAGKINDVCVF 332 (702)
Q Consensus 317 ~~i~~h~~~I~~v~~~ 332 (702)
....+|.....+++..
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998877777654
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=254.08 Aligned_cols=277 Identities=14% Similarity=0.205 Sum_probs=242.4
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
+..+|+.+-|+|+-.. +++++.|.+|++||+.+. ...+.+|+++ +.-+.++..|.+|++++.|-.+.+|+.....
T Consensus 107 ~r~~vt~v~~hp~~~~-v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEAL-VVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred cccceeeeeeccCceE-EEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 5678999999999876 899999999999999984 3467789888 6666788889999999999999999987532
Q ss_pred EEEe---cCC-CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 139 YSLR---IPR-MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 139 ~~~~---i~~-~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
...+ -+. ...++.+.|.+..+++++.|.+|+.|++.+|-++.+|.+|...|..+..+.+|.++|+|+.|.+|++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 2211 122 233888999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCC--------------CCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSN--------------GGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDS 279 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd--------------~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~ 279 (702)
+.++++...+..| ..+|-|++|.|. ++.++++++.|++|++||+.++.++. +.+| ..
T Consensus 264 ~~t~~~k~~lR~h------Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--dn 335 (406)
T KOG0295|consen 264 VATKQCKAELREH------EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--DN 335 (406)
T ss_pred eccchhhhhhhcc------ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--cc
Confidence 9999999999888 789999999763 24689999999999999999999887 7888 78
Q ss_pred CeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 280 PIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
.|..++|+| .+.+++.+++|++|+|||+.++.++.++++|..-|+++.|+.+..++++|+-+..+.+|.
T Consensus 336 wVr~~af~p---~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 336 WVRGVAFSP---GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeeeEEcC---CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999998 344444555899999999999999999999999999999999999999999999998884
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=243.51 Aligned_cols=280 Identities=13% Similarity=0.167 Sum_probs=226.7
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
++-..|++.|.++.|+|+|.+ ||||++|..|.+|++.. .-.++.+|..+ |.. +-+..|++.|++++.|++|..|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA-VM~-l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENFWVLKGHSGA-VME-LHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccceeeeccccce-eEe-eeeccCCCEEEEecCCceEEEE
Confidence 445678999999999999999 99999999999999766 33456677444 444 4467788999999999999999
Q ss_pred ecCCceEEEecCCCccceEEecC---CCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC
Q 005325 133 AKYGKHYSLRIPRMGRDMAYNSW---SCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG 208 (702)
Q Consensus 133 ~~~g~~~~~~i~~~~~~l~~~~~---s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG 208 (702)
|........+...+..++...++ +.. +.+++.|+++.+||+.+...++++.... .++++.|...+..+.+|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccccC
Confidence 99843333333333333333332 223 4566678899999999888887774433 699999999999999999999
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC----eEEE-EeeccCCCC--e
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS----YPIR-VKDHMFDSP--I 281 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~----~~l~-~~~h~~~~~--I 281 (702)
.|++||++......++..| ..+|+.|..+|+ |.++.+-+.|.+|++||+|-. .++. +.+|.+... .
T Consensus 197 ~ikvWd~r~~d~~~~lsGh------~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGH------ADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ceeeeccccCcceEEeecc------cCceeeEEeccC-CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 9999999999999999999 799999999999 999999999999999999952 3344 455544443 4
Q ss_pred EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 282 VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
..++|+| ++..+-+++.|+.|+|||..+-..++.+++|.+.|+++.|+|...+|++++.|.+|+.
T Consensus 270 L~cswsp---~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 270 LKCSWSP---NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceeeccC---CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 5778998 4455556668999999999998999999999999999999999999999999998865
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=240.81 Aligned_cols=272 Identities=16% Similarity=0.245 Sum_probs=213.7
Q ss_pred CCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecC
Q 005325 5 GGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYP 84 (702)
Q Consensus 5 dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~d 84 (702)
.+.++++.++.+-.+-+|.|++. + ..+-.-+..+. .|+..|+.+..++||+| ++++++|
T Consensus 26 ~~~~~l~sasrDk~ii~W~L~~d-----d-------------~~~G~~~r~~~--GHsH~v~dv~~s~dg~~-alS~swD 84 (315)
T KOG0279|consen 26 KNSDILVSASRDKTIIVWKLTSD-----D-------------IKYGVPVRRLT--GHSHFVSDVVLSSDGNF-ALSASWD 84 (315)
T ss_pred CCCceEEEcccceEEEEEEeccC-----c-------------cccCceeeeee--ccceEecceEEccCCce-EEecccc
Confidence 34555666666777777777664 1 11211111111 36778899999999999 9999999
Q ss_pred CcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCC----ccceEEecCC--
Q 005325 85 PQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRM----GRDMAYNSWS-- 156 (702)
Q Consensus 85 g~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~----~~~l~~~~~s-- 156 (702)
+.+++||+.+ ....|.+|... +-.+.+++|.+.+++++.|++|.+|++-|.+.-+..... ..++.|+|..
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKD--VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCc--eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999998 45688888655 777889999999999999999999999976554443332 2288888884
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
+.++.++.|+.|.+||+.+.+....+.+|++.++.++++|+|.++++|+.||.+.+||++.++.+.++... ..
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-------~~ 235 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-------DI 235 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-------Ce
Confidence 45888899999999999999999999999999999999999999999999999999999999999888876 89
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-E--eeccC-----CCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-V--KDHMF-----DSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~--~~h~~-----~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
|.+|+|+|+ ...|+.+.. -.|+|||+.++..+. + ....+ .....+++|++ ++..|+++-.|+.|++|
T Consensus 236 v~sl~fspn-rywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~---dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 236 VNSLCFSPN-RYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA---DGQTLFAGYTDNVIRVW 310 (315)
T ss_pred EeeEEecCC-ceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC---CCcEEEeeecCCcEEEE
Confidence 999999999 666665544 459999999887654 1 11111 22356889996 56666666689999999
Q ss_pred eCC
Q 005325 309 DPE 311 (702)
Q Consensus 309 d~~ 311 (702)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 875
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=259.84 Aligned_cols=318 Identities=16% Similarity=0.185 Sum_probs=246.7
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCC-CCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQR-SVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~-slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llat 80 (702)
.||||. .+.+...|-+.||...+--+ .++-+. .+| ..+.+-..+++|.||.|.++ |++
T Consensus 104 fSPng~--~fav~~gn~lqiw~~P~~~~~~~~pFv--------------l~r----~~~g~fddi~si~Ws~DSr~-l~~ 162 (893)
T KOG0291|consen 104 FSPNGK--FFAVGCGNLLQIWHAPGEIKNEFNPFV--------------LHR----TYLGHFDDITSIDWSDDSRL-LVT 162 (893)
T ss_pred ECCCCc--EEEEEecceeEEEecCcchhcccCcce--------------Eee----eecCCccceeEEEeccCCce-EEe
Confidence 478998 67788888899998866511 122221 111 12345577999999999999 999
Q ss_pred EecCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC---------------------
Q 005325 81 GIYPPQVKVYELRQ----LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--------------------- 135 (702)
Q Consensus 81 Gs~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--------------------- 135 (702)
|+.|-.++||.+.. ....+.+|.+. +..++|..+...+++.+.||.|.+|...
T Consensus 163 gsrD~s~rl~~v~~~k~~~~~~l~gHkd~--VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~ 240 (893)
T KOG0291|consen 163 GSRDLSARLFGVDGNKNLFTYALNGHKDY--VVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM 240 (893)
T ss_pred ccccceEEEEEeccccccceEeccCCCcc--eEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence 99999999999987 34577788666 6677788888999999999999999544
Q ss_pred ---Cc-------eEEEec---C---CCccceEEecCC-----------------------------------------Cc
Q 005325 136 ---GK-------HYSLRI---P---RMGRDMAYNSWS-----------------------------------------CD 158 (702)
Q Consensus 136 ---g~-------~~~~~i---~---~~~~~l~~~~~s-----------------------------------------~~ 158 (702)
+. ++.+.. . ....+..|++.. ++
T Consensus 241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD 320 (893)
T KOG0291|consen 241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD 320 (893)
T ss_pred cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC
Confidence 10 111100 0 000122222211 11
Q ss_pred -EEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 159 -LLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 159 -llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
+++++.. |.+.+|+..+..++...++|...++|++++|+|+++|+|++||.|+|||..++-|+.++..| ...
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH------ts~ 394 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH------TSG 394 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC------CCc
Confidence 2222222 46777888888888888899999999999999999999999999999999999999999998 799
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe--CCCEEEEEeCCCCc
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT--DNHIVRIWDPETGE 314 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss--~Dg~V~IWd~~tg~ 314 (702)
|+.++|+.. |..|++.+.||+|+.||+...+...+..........+++..| .+.+|+++ +.-.|.||++.+|+
T Consensus 395 Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~----sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 395 VTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP----SGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred eEEEEEEec-CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC----CCCEEEeeccceEEEEEEEeecCe
Confidence 999999999 999999999999999999988877755443234456777776 56666655 45579999999999
Q ss_pred eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 315 SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 315 ~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
++-.+.+|.++|.+++|+|.+..|++++-|.+|++|.|-
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 999999999999999999999999999999999999863
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.4e-28 Score=269.75 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=218.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--Cce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~ 138 (702)
-...++|..||+|+.. ||.|..|..|++|.+....++-..+... ++ .+=+.+.|-.+.+-+.. +..
T Consensus 377 t~~~v~ca~fSddssm-lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~-------l~----~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSM-LACGFVDSSVRVWSLTPKKLKKLKDASD-------LS----NIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred cCCcceeEeecCCcch-hhccccccEEEEEecchhhhccccchhh-------hc----cccccccchhhhhccccCCcee
Confidence 4578999999999997 9999999999999998644322222111 00 00011122222222222 111
Q ss_pred EEEe-cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 139 YSLR-IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 139 ~~~~-i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
..+. .........|.|....|++++.|.+|++|.+.+..++..+.+|..+|+++.|+|.|.+||||+.|++.++|....
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 1111 112223677788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCe
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPK 296 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~l 296 (702)
..+...+.+| .+.|.|+.|+|+ ..++++|++|.+|++||+.++..+. +.+| ..+|++|+|+| ++.+
T Consensus 525 ~~PlRifagh------lsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH--~~~V~al~~Sp----~Gr~ 591 (707)
T KOG0263|consen 525 NKPLRIFAGH------LSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGH--KGPVTALAFSP----CGRY 591 (707)
T ss_pred CCchhhhccc------ccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCC--CCceEEEEEcC----CCce
Confidence 8999999888 689999999999 9999999999999999999999888 5677 78999999998 5555
Q ss_pred EE-EeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 297 LI-TTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 297 l~-ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++ ++.|+.|+|||+.+|.++..+..|.+.|.+|.|+.++++|++++.|..|.+|.+-.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 55 55799999999999999999999999999999999999999999999999997654
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=256.33 Aligned_cols=293 Identities=17% Similarity=0.244 Sum_probs=243.9
Q ss_pred eeeecccCC-CceeEEEECCCCCEEEEEEec-CCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeE
Q 005325 54 ELIQDLWFE-TATTKIRETPDGEFLIVSGIY-PPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSI 129 (702)
Q Consensus 54 eliqd~~~~-~~v~~i~~SpDG~~llatGs~-dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I 129 (702)
.+|+.+... ..|..++|+..|.+ ||.|+. =|++-||++...+ ++..+|... +.++..||||+.+|+|+.|+.|
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred eEEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECCCCcEEEeccCCCcE
Confidence 567777766 78999999999999 666655 4899999998844 566777666 8888899999999999999999
Q ss_pred EEEecCCceEEEec--CCC-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEE
Q 005325 130 SLHAKYGKHYSLRI--PRM-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 130 ~iw~~~g~~~~~~i--~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs 205 (702)
+|||.....+...+ +.. ...+.|...+.-+++++-||+|..||+...+..++|+.... ...||+..|.|.+++.|+
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 99999853333323 222 23777888888899999999999999999999999987654 678999999999999999
Q ss_pred cCC-eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEEEeeccCCCCeEE
Q 005325 206 EDG-AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIRVKDHMFDSPIVD 283 (702)
Q Consensus 206 ~DG-~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~~~~h~~~~~I~s 283 (702)
.|. .|.+|++.+|+.+-.+.+| .++|.+|+|+|. +..|++|+.|.+|++||+-... .+....+ ...+..
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGH------EgPVs~l~f~~~-~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~ 525 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGH------EGPVSGLSFSPD-GSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLA 525 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCC------CCcceeeEEccc-cCeEEeccccceEEEEEeeccCceeeeEee--ccceeE
Confidence 875 5999999999999999998 799999999999 9999999999999999997653 2234444 457899
Q ss_pred EEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC--------------------CCCceeEEEEEcCCCEEEEEeC
Q 005325 284 IKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP--------------------TAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~--------------------h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
++|+| ++..+++++-||.|.+||+..+..+.+|.+ ....++.+|+++|+..|++|++
T Consensus 526 vsfrP---dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 526 VSFRP---DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred EEEcC---CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 99999 677777788899999999988777665543 1247899999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCc
Q 005325 344 CSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 344 d~~I~~~~ip~lg~ap~W 361 (702)
...|++|.+|.--...+|
T Consensus 603 sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 603 SNSICIYDVPEGVLLKKF 620 (893)
T ss_pred cccEEEEECchhheeeeE
Confidence 999999999986666666
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=4e-29 Score=254.90 Aligned_cols=271 Identities=15% Similarity=0.190 Sum_probs=227.6
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
+|+|.. +|+.+..+.+.+||.++- - .|.|. ..|..+|.++.||++|.+ +++|.
T Consensus 105 tPeGRR-Lltgs~SGEFtLWNg~~f-n-----------------------FEtil-QaHDs~Vr~m~ws~~g~w-miSgD 157 (464)
T KOG0284|consen 105 TPEGRR-LLTGSQSGEFTLWNGTSF-N-----------------------FETIL-QAHDSPVRTMKWSHNGTW-MISGD 157 (464)
T ss_pred cCCCce-eEeecccccEEEecCcee-e-----------------------HHHHh-hhhcccceeEEEccCCCE-EEEcC
Confidence 578888 488888999999998664 0 01111 247899999999999999 99999
Q ss_pred cCCcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc---ceEEecCCCc
Q 005325 83 YPPQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DMAYNSWSCD 158 (702)
Q Consensus 83 ~dg~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~~ 158 (702)
.+|.|++|+.+... ..+..|... -+..+.+||+..++++|+.|++|+||+..-......+..++. ++.++|....
T Consensus 158 ~gG~iKyWqpnmnnVk~~~ahh~e-aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNNVKIIQAHHAE-AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred CCceEEecccchhhhHHhhHhhhh-hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 99999999987633 345556433 356666787889999999999999999874333333333333 7777777778
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
+++++.|+.|.+||..+|.++.++..|...|..+.|+|++++|+++|.|..++++|+++.+.+.++..| ...|+
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H------kkdv~ 310 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH------KKDVT 310 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc------hhhhe
Confidence 999999999999999999999999999999999999999999999999999999999998889999988 79999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE 311 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~ 311 (702)
+++|+|-...+|.+|+.||.|..|.+-..+|+....+.+...|++++|+| -+++++++ .|.++++|...
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP----lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP----LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc----cceeEeecCCCcceeeeccC
Confidence 99999987889999999999999999988888766666689999999999 67888776 59999999865
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=4.6e-28 Score=265.57 Aligned_cols=251 Identities=18% Similarity=0.231 Sum_probs=199.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccC-CCCCcc--ccchH-------hhhhhccCcccccceeeeecccCCCceeEEEECC
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQ-QRSVAA--WLTPK-------KQRALRKNIDYQRRVELIQDLWFETATTKIRETP 72 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g-~~slp~--w~~~k-------~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~Sp 72 (702)
|.|+. ++...+.+..|+||.++.- =+++|. |+.+- ..+-+..+..... -....|.++|..+.|+|
T Consensus 387 Sddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~----~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 387 SDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS----RTLYGHSGPVYGCSFSP 461 (707)
T ss_pred cCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee----EEeecCCCceeeeeecc
Confidence 45555 3444578888999999853 034433 22211 0111111111111 12567999999999999
Q ss_pred CCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccce
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDM 150 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l 150 (702)
|.++ |++++.|.+|++|.+.+.+ ..+.+|. .++..+.|+|-|-++|+++.|++-++|..
T Consensus 462 d~rf-LlScSED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P~GyYFatas~D~tArLWs~---------------- 522 (707)
T KOG0263|consen 462 DRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAPRGYYFATASHDQTARLWST---------------- 522 (707)
T ss_pred cccc-eeeccCCcceeeeecccceeEEEecCCC--cceeeEEecCCceEEEecCCCceeeeeec----------------
Confidence 9999 8999999999999999844 4666663 34666778899999999999999988654
Q ss_pred EEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC
Q 005325 151 AYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA 230 (702)
Q Consensus 151 ~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~ 230 (702)
.....++.|.+|.+.|.|+.|+|+.+++++||.|.+|++||+.++..+..|.+|
T Consensus 523 -----------------------d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH--- 576 (707)
T KOG0263|consen 523 -----------------------DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH--- 576 (707)
T ss_pred -----------------------ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC---
Confidence 334566788899999999999999999999999999999999999999999988
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 231 GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 231 ~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
..+|++|+|||+ |.+|++|+.||.|.|||+.++.++. +++| ...|.+|.|+. +++.+++++.|++|++||
T Consensus 577 ---~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~---dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 577 ---KGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSR---DGNVLASGGADNSVRLWD 647 (707)
T ss_pred ---CCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEec---CCCEEEecCCCCeEEEEE
Confidence 799999999999 9999999999999999999999887 7889 78999999997 555555666899999999
Q ss_pred CCC
Q 005325 310 PET 312 (702)
Q Consensus 310 ~~t 312 (702)
+..
T Consensus 648 ~~~ 650 (707)
T KOG0263|consen 648 LTK 650 (707)
T ss_pred chh
Confidence 864
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1e-26 Score=243.73 Aligned_cols=285 Identities=18% Similarity=0.202 Sum_probs=226.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEe---eecCCceEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFE---RHLDSEIINFEVLADDYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~---~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~ 134 (702)
+|..-|+|++|||||.+ +||.+.|+.|.|||-.+... .+. .|..+ +-.+.++||++++++++.|.+++||++
T Consensus 188 ~HskFV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs--IfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS--IFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred ccccceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEEecCCCCcccc--EEEEEECCCCceEEEecCCceEEEEEe
Confidence 46678999999999999 99999999999999887332 344 56555 667778999999999999999999999
Q ss_pred CCceEEEecCCCcc----ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 135 YGKHYSLRIPRMGR----DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 135 ~g~~~~~~i~~~~~----~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
........++-... .+-+.-.+..|++.+.+|.|..+|+..+..+..+.+|...|+++..+|++.+|++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 84433333332222 33334445569999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcce-----------eEEecccCC-------------------------------------------------
Q 005325 211 ECFDMRMRSSA-----------ARINAVAPA------------------------------------------------- 230 (702)
Q Consensus 211 ~iWD~~t~~~v-----------~~l~~~~~~------------------------------------------------- 230 (702)
.-||..++..- ..+......
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 99998765321 111111100
Q ss_pred ---------------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE---EEeeccCCCCeEEEEEeeccCC
Q 005325 231 ---------------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI---RVKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 231 ---------------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l---~~~~h~~~~~I~sl~fsp~~~~ 292 (702)
..-....++++++|+ +..+|+|+.||.|+||.|...... ....| ..+|++|+|+|
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h--~a~iT~vaySp---- 497 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH--RAAITDVAYSP---- 497 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcccceeeeecc--cCCceEEEECC----
Confidence 011234578999999 999999999999999999875532 35667 78999999998
Q ss_pred CCCeEEEeC-CCEEEEEeCCCCceeE-EecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 293 ERPKLITTD-NHIVRIWDPETGESMT-SIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 293 ~~~ll~ss~-Dg~V~IWd~~tg~~l~-~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++.++++++ .+.|.+||+.+.+... ....|.+.|++|+|+|++.++++++-|..|.+|.+..
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 667777775 8999999999877643 3455999999999999999999999999999998753
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=257.02 Aligned_cols=301 Identities=12% Similarity=0.197 Sum_probs=241.7
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCceeEEEE-CCCCCEEEEEEecCCcE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETATTKIRE-TPDGEFLIVSGIYPPQV 87 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~v~~i~~-SpDG~~llatGs~dg~I 87 (702)
++.++++.++-+|+.... .++.. ..+.+.|..++| .|+.++ ||.+++.+.+
T Consensus 296 ~l~vtaeQnl~l~d~~~l--------------------------~i~k~ivG~ndEI~Dm~~lG~e~~~-laVATNs~~l 348 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDEL--------------------------TIVKQIVGYNDEILDMKFLGPEESH-LAVATNSPEL 348 (775)
T ss_pred eEEEEccceEEEEEcccc--------------------------EEehhhcCCchhheeeeecCCccce-EEEEeCCCce
Confidence 567777888888866665 12222 246677888887 577788 8999999999
Q ss_pred EEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEE---ec-C---CCccceEEecCCCc-
Q 005325 88 KVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSL---RI-P---RMGRDMAYNSWSCD- 158 (702)
Q Consensus 88 ~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~---~i-~---~~~~~l~~~~~s~~- 158 (702)
++|++.+... .+.+|.+. +.++. ...+|-.|++|+.|.++.+|......... .. . ....+++++.....
T Consensus 349 r~y~~~~~~c~ii~GH~e~-vlSL~-~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 349 RLYTLPTSYCQIIPGHTEA-VLSLD-VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEEecCCCceEEEeCchhh-eeeee-ecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 9999988554 55666443 44444 33455799999999999999774222111 11 1 11125555444444
Q ss_pred EEEEecCCCEEEEECCCCeE-----EE----EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 159 LLCAASSPELYRINLEQGRF-----LS----SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~-----~~----~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
+++++.|.++.+|++...+. +. +...|...|||++++|+..+|||||.|.+.+||++.......++..|
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-- 504 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-- 504 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC--
Confidence 77888999999999876221 11 22458889999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
...|.|+.|+|. ...||++|.|++|+||.+.+..++. +.+| ...|..+.|.. ++.++++++.||.|+||
T Consensus 505 ----~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~fSClkT~eGH--~~aVlra~F~~---~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 505 ----TRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTFSCLKTFEGH--TSAVLRASFIR---NGKQLISAGADGLIKLW 574 (775)
T ss_pred ----ccceEEEEeccc-cceeEeccCCceEEEEEeccceeeeeecCc--cceeEeeeeee---CCcEEEeccCCCcEEEE
Confidence 799999999999 9999999999999999999999998 5568 78999999985 67788888899999999
Q ss_pred eCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 309 DPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 309 d~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
++.++.++.++..|...|+.++.+|...++++|+.|+.|..|-
T Consensus 575 nikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999999999884
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.4e-27 Score=261.37 Aligned_cols=281 Identities=15% Similarity=0.213 Sum_probs=230.3
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--E--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--L--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G 136 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g 136 (702)
..+++|+.||+||++ +++++.++.|++|++.... + .+.+|... +..+.|++++.++++++.|++|++|+.. .
T Consensus 159 ~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~--v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRG--VSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccc--eeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 678999999999999 9999999999999995533 2 33455433 7777899999999999999999999994 3
Q ss_pred -ceEEEecC--CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 137 -KHYSLRIP--RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 137 -~~~~~~i~--~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
....+-.. ....+++|++.+..+++++.|++|++||+.++.++..+.+|...|++++|++++++|++++.|+.|++|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 33332222 233489999999778999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCC-CCeEEEEEeec
Q 005325 214 DMRMRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFD-SPIVDIKWHQS 289 (702)
Q Consensus 214 D~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~-~~I~sl~fsp~ 289 (702)
|+.++. ++..+..+. ... ++++++|+|+ +.+|++++.|+.|++||++.+..+. ...|... ..+.+..+++
T Consensus 316 d~~~~~~~~~~~~~~~~---~~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAE---NSA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred ECCCCceeeeecccCCC---CCC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 999998 556666552 112 7999999999 9999999999999999999888666 6677433 1233333332
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC-CCceeEEEEEcCCCEEEEEe--CCCcEEEEEcC
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPT-AGKINDVCVFKDSGLLLLAL--DCSQIPSYFIP 353 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h-~~~I~~v~~~p~~~~l~~a~--~d~~I~~~~ip 353 (702)
.+..+++++.|+.|.+||+.++..+..+++| ...|..+.|+|...++++++ .|+.+.+|..+
T Consensus 390 --~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 --GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3444555668999999999999999999999 88999999999999999998 67788888543
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=7.1e-26 Score=270.47 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=216.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--------EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--------LKFERHLDSEIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--------~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
.+...|++++|+|+|++ ||||+.|+.|+||++.... ..........+..++|.++++..|++++.|++|++
T Consensus 481 ~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 37788999999999999 8999999999999975410 01111113445666666667889999999999999
Q ss_pred EecCCceEEEecCCC---ccceEEecCCC-cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEc-CCCCEEEEEEc
Q 005325 132 HAKYGKHYSLRIPRM---GRDMAYNSWSC-DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRS-KLHGLIACGGE 206 (702)
Q Consensus 132 w~~~g~~~~~~i~~~---~~~l~~~~~s~-~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~s-p~~~llasgs~ 206 (702)
|+.........+..+ ..++.+++... .|++++.|+.|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 998744333333222 33777776544 4788889999999999999998888765 579999995 56899999999
Q ss_pred CCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC------eEEE-EeeccCC
Q 005325 207 DGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS------YPIR-VKDHMFD 278 (702)
Q Consensus 207 DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~------~~l~-~~~h~~~ 278 (702)
||.|++||+++.. ++..+..| ...|++++|. + +.+|++++.|++|+|||++.. .++. +.+| .
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h------~~~V~~v~f~-~-~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~ 708 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGH------SKTVSYVRFV-D-SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--T 708 (793)
T ss_pred CCeEEEEECCCCCccceEecCC------CCCEEEEEEe-C-CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--C
Confidence 9999999999765 46666666 6899999997 5 789999999999999999853 3444 5566 6
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe-------------cCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI-------------EPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i-------------~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
..|..++|+| ++..+++++.|+.|+||+.....++.++ ..|...|++++|+|++.+|++|+.++
T Consensus 709 ~~i~~v~~s~---~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 709 NVKNFVGLSV---SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCeeEEEEcC---CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 7899999998 4555666668999999998765544322 23455799999999999999999999
Q ss_pred cEEEEEc
Q 005325 346 QIPSYFI 352 (702)
Q Consensus 346 ~I~~~~i 352 (702)
.|.+|.+
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999965
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=6.7e-27 Score=234.91 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=232.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
|-+-|.||++.|-.++ ++||+.|++|+|||+.+.. +.+.+|.. .+.-+.+|+--.+|++++.|+.|+.||+....
T Consensus 150 HlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~LkltltGhi~--~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTLTGHIE--TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred ccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEeecchhh--eeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 6788999999999999 9999999999999999944 45566643 37778888888999999999999999987322
Q ss_pred EEEecC---CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 139 YSLRIP---RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 139 ~~~~i~---~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
..-... ....++..+|.-.-|++++.|..+++||+.+...+..+.+|...|..+.+.|....+++||.|++|++||+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 211111 12236666666666899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
+.++...++..| ...|.+++.+|. ...||+++.|. |+.|++..+..+. +.+| ..-|++++.+. ++
T Consensus 307 ~agkt~~tlt~h------kksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~nlsgh--~~iintl~~ns----D~ 372 (460)
T KOG0285|consen 307 RAGKTMITLTHH------KKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQNLSGH--NAIINTLSVNS----DG 372 (460)
T ss_pred ccCceeEeeecc------cceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhhccccc--cceeeeeeecc----Cc
Confidence 999999999988 789999999999 88888877764 8999999988766 6667 67899999874 88
Q ss_pred CeEEEeCCCEEEEEeCCCCceeEEecC--------CCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 295 PKLITTDNHIVRIWDPETGESMTSIEP--------TAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 295 ~ll~ss~Dg~V~IWd~~tg~~l~~i~~--------h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.++++++.|.|.+||..+|-.++.++. ....|.+.||...+..|++|..|..|.+|.-
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 889999999999999999876665421 1347888999999999999999999999963
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-27 Score=240.33 Aligned_cols=278 Identities=13% Similarity=0.147 Sum_probs=228.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-----ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-----LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
|...|.-+.||++|+| |||++.|.+..+|.+.. +..++.+|... |..+.+|||.++|++|+.|..+.+||+.
T Consensus 223 htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~--V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP--VSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred CCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceeeeeeeecccCc--eEEEEECCCCCeEEecCchHheeeccCC
Confidence 5678999999999999 99999999999999876 23466677555 8899999999999999999999999998
Q ss_pred CceEEEecCCC----ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecC-CCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 136 GKHYSLRIPRM----GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQ-SPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 136 g~~~~~~i~~~----~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h-~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
........+.. ..+.++.|.+..+++|+.+.+++.||+... .+..+++- ...|.+++++++|.++++.+.|..|
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i 378 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKI 378 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccce
Confidence 32222222222 237777888888999999999999998643 34444432 3569999999999999999999999
Q ss_pred EEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeec
Q 005325 211 ECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 211 ~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~ 289 (702)
++++..+......+..+ .+|++++.|.+ +.++++.-.+..|++||+...+.+. ..+|.-+.-|..-||--
T Consensus 379 ~l~~~e~~~dr~lise~-------~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg- 449 (519)
T KOG0293|consen 379 RLYNREARVDRGLISEE-------QPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG- 449 (519)
T ss_pred eeechhhhhhhcccccc-------CceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC-
Confidence 99999988777767666 89999999999 9999999999999999999766554 67776566677777863
Q ss_pred cCCCCCeEEE-eCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcC
Q 005325 290 INTERPKLIT-TDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 290 ~~~~~~ll~s-s~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip 353 (702)
.+..++++ +.|+.|+||+..+|+++..+.+|...||+|+|+| +-.|+++|++|++|++|-+.
T Consensus 450 --~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 450 --GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 23345554 5799999999999999999999999999999999 55689999999999999643
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=224.99 Aligned_cols=265 Identities=12% Similarity=0.185 Sum_probs=211.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCC-CceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFE-TATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~-~~v~~i~~SpDG~~llatG 81 (702)
++|..- ++.++.++.+-||+.-+..| .+-+.+| .-|...+|+|.|++ +|+|
T Consensus 64 s~Dsr~-ivSaSqDGklIvWDs~TtnK--------------------------~haipl~s~WVMtCA~sPSg~~-VAcG 115 (343)
T KOG0286|consen 64 STDSRR-IVSASQDGKLIVWDSFTTNK--------------------------VHAIPLPSSWVMTCAYSPSGNF-VACG 115 (343)
T ss_pred cCCcCe-EEeeccCCeEEEEEcccccc--------------------------eeEEecCceeEEEEEECCCCCe-EEec
Confidence 345553 57777777788887755511 1222333 45788999999999 9999
Q ss_pred ecCCcEEEEEcCCc--------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc---ce
Q 005325 82 IYPPQVKVYELRQL--------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DM 150 (702)
Q Consensus 82 s~dg~I~vwdl~~~--------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l 150 (702)
+-|+...||++... ...+.+|... ++++.|-+| ..|++++.|.++.+||+..-.....+..+.. ++
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy--lScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY--LSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccce--eEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 99999999999852 2346777555 666666665 7899999999999999995444444444433 44
Q ss_pred EEecCCC-cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 151 AYNSWSC-DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 151 ~~~~~s~-~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
...|.+. .+++++.|...++||+..+.++++|.+|.+.|++|+|.|+|.-|++|++|++.++||+|..+.+..+...
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-- 270 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-- 270 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--
Confidence 4555333 3788889999999999999999999999999999999999999999999999999999999988888755
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEE-eCCCEEEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLIT-TDNHIVRI 307 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s~Dg~V~I 307 (702)
....+|++++||.. |++|++|..|..+.+||.-.++.+. +.+| ...|++|..+| ++..|++ +.|.+|+|
T Consensus 271 --~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~----DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 271 --SIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSP----DGMAVATGSWDSTLRI 341 (343)
T ss_pred --cccCCceeEEEccc-ccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECC----CCcEEEecchhHheee
Confidence 23589999999999 9999999999999999998887665 6788 78999999998 5555554 57999999
Q ss_pred Ee
Q 005325 308 WD 309 (702)
Q Consensus 308 Wd 309 (702)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.2e-27 Score=250.48 Aligned_cols=253 Identities=11% Similarity=0.227 Sum_probs=211.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec-CCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL-DSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~-~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
.+..|.||.|+|...+ +.++-|.|.|.||+..+..+.-..+. +-+|..+.++. --+++++|+.|..|+|
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrV-------- 81 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRV-------- 81 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEE--------
Confidence 4677899999999999 77889999999999998665333332 33344444443 3366777777766655
Q ss_pred EEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC-
Q 005325 140 SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR- 218 (702)
Q Consensus 140 ~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~- 218 (702)
||..+++.+..|..|.+.|.||+.+|...+++|+|+|-+|++||....
T Consensus 82 -------------------------------fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w 130 (794)
T KOG0276|consen 82 -------------------------------FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW 130 (794)
T ss_pred -------------------------------EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce
Confidence 888899999999999999999999999999999999999999999854
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
.+.+++..| ...|.+|+|+|.+.+.||+++-|++|+||.+.+..|.. +.+| ...|+++.|.|.. +..+++
T Consensus 131 a~~qtfeGH------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~g-dkpylI 201 (794)
T KOG0276|consen 131 ACEQTFEGH------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGG-DKPYLI 201 (794)
T ss_pred eeeeEEcCc------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCC-CcceEE
Confidence 678888888 78999999999889999999999999999999998877 6777 7899999999711 122777
Q ss_pred EEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC--------CCCCCCccC
Q 005325 298 ITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD--------LGPTPKWCS 363 (702)
Q Consensus 298 ~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~--------lg~ap~Wcs 363 (702)
++++|.+|+|||..+..+++++++|...|+.++|+|.-+++++|++||+|++|.... .|.-..||-
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 778999999999999999999999999999999999999999999999999997432 344456765
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=218.58 Aligned_cols=272 Identities=12% Similarity=0.156 Sum_probs=217.8
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ce---EEEecC-C
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KH---YSLRIP-R 145 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~---~~~~i~-~ 145 (702)
+|...|||+++||.+|++|...+... ....|.++.|. .+.+.||...||+++. ..|++||+.. .. ..+..+ +
T Consensus 7 ~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 7 TDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCceEEEeccCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence 34556799999999999999998544 44456566554 4557788788877764 5799999873 22 223333 3
Q ss_pred CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 146 MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 146 ~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
....+.|...+.-+++++.||++++||+..-.+.+.|. |.++|++|..+|+..-|++|..+|.|++||+....+...+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 33477777777779999999999999999866666554 55899999999999999999999999999999887666555
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe------EEE-EeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY------PIR-VKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~------~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
.. ...+|.++...|+ |.+|+.+...|..++|++-+.. |+. +..| ..-|..+.++| +..++++
T Consensus 164 Pe-----~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSP---d~k~lat 232 (311)
T KOG0315|consen 164 PE-----DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSP---DVKYLAT 232 (311)
T ss_pred CC-----CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECC---CCcEEEe
Confidence 44 2578999999999 9999999999999999997632 333 5566 67899999998 4555566
Q ss_pred EeCCCEEEEEeCCCC-ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 299 TTDNHIVRIWDPETG-ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 299 ss~Dg~V~IWd~~tg-~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
++.|.+|+||++++- +.-..+++|...+.+++|+.++.+|++|+.|..+++|.++.-..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 668999999999986 66678899999999999999999999999999999998776443
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-26 Score=240.27 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=237.9
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC------ceEEEee--------ecCCceEEEEEEcCCCCEEEEEEC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ------LSLKFER--------HLDSEIINFEVLADDYSKLAFLCA 125 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~------~~~~~~~--------h~~~~vv~~~~ls~dg~~Las~s~ 125 (702)
.|...|.+.+|+|-..-++++|+.+-..++|++.. ..+.+.. .....-++.+.++.+|+.||+++.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 37788999999998775589999999999999985 1111110 111123667778889999999999
Q ss_pred CCeEEEEecCCceEEE-ecCCCc-cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEE
Q 005325 126 DRSISLHAKYGKHYSL-RIPRMG-RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIAC 203 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~-~i~~~~-~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llas 203 (702)
||.+++|+..|....+ ..++.+ ..+.++.....+++++.|+++.+||..+|.....|..|+.+-..|.|-. ..-|++
T Consensus 256 ~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~t 334 (524)
T KOG0273|consen 256 DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFAT 334 (524)
T ss_pred CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEee
Confidence 9999999998755443 222222 2777777777799999999999999999999999999998767788863 457899
Q ss_pred EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeE
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIV 282 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~ 282 (702)
++.||.|+++-+....++.++..| ..+|.+|.|+|. |.+|++++.|++++||......... +..| ...|.
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH------~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~H--skei~ 405 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGH------HGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAH--SKEIY 405 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecc------cCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhh--cccee
Confidence 999999999999999999999998 699999999999 9999999999999999988777665 6777 67899
Q ss_pred EEEEeecc------CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 283 DIKWHQSI------NTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 283 sl~fsp~~------~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+.|+|+. ..+..+++++.|++|++||+..|.++.++..|..+|.+|+|+|++.++++++.|+.|++|.++.
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999854 2233455566899999999999999999999999999999999999999999999999998875
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-26 Score=233.61 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=224.5
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCC--CEEEEEECCCeEEEE
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDY--SKLAFLCADRSISLH 132 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg--~~Las~s~D~~I~iw 132 (702)
++.|.|+.-|.+|... +++ |.||+|||.++|||... ..+...+| ...+..+.+..++. ..|++++.|+++.+|
T Consensus 99 l~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~Gk~~~~~~Gh-t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKGKSIKTIVGH-TGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCCceEEEEecC-CcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 4556677778888777 678 89999999999999988 55567777 45566677766553 358999999999999
Q ss_pred ecC-Cc-eEE-Eec---C-CCccceEEecCCCcEEEEecCCCEEEEECC-------------------------CCeEEE
Q 005325 133 AKY-GK-HYS-LRI---P-RMGRDMAYNSWSCDLLCAASSPELYRINLE-------------------------QGRFLS 180 (702)
Q Consensus 133 ~~~-g~-~~~-~~i---~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~-------------------------~g~~~~ 180 (702)
... +. ... +.. + ....++...+.+..+++++.|..|.+|+.+ ++.++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 765 21 111 111 1 112266667777779999999999999821 123566
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
++.+|..+|.+|.|++ ...+++++.|.+|+.||+.++..+.++.+. ..++|+.++|. ..+|++|++|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-------ksl~~i~~~~~-~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-------KSLNCISYSPL-SKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-------cceeEeecccc-cceeeecCCCCcee
Confidence 7889999999999997 779999999999999999999999999887 89999999999 99999999999999
Q ss_pred EEEcCCCe--EEE--EeeccCCCCeEEEEEeeccCCCCCeEEE-eCCCEEEEEeCCCCc-eeEEecCCCCceeEEEEEcC
Q 005325 261 IYDLRSSY--PIR--VKDHMFDSPIVDIKWHQSINTERPKLIT-TDNHIVRIWDPETGE-SMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 261 lwDlrs~~--~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s~Dg~V~IWd~~tg~-~l~~i~~h~~~I~~v~~~p~ 334 (702)
|||.|++. .+. +.+| ...|.++.|+| .+.+++++ +.|+++++||+++.+ +++.|.+|...|.++.|..
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp---~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~- 399 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSP---TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE- 399 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCC---CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-
Confidence 99999754 322 6788 56999999999 45555554 579999999999877 9999999999999999975
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 005325 335 SGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 335 ~~~l~~a~~d~~I~~~~ip 353 (702)
+..|++|+.|.+|++|.-.
T Consensus 400 ~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEeccCcceEEEeccc
Confidence 5579999999999998543
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=221.42 Aligned_cols=236 Identities=19% Similarity=0.301 Sum_probs=202.7
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
..++|..+.|+-||+| .+|++.|.+|++|+... +..++.+| ..+|.++. ++.|..++++|+.|+.|.+
T Consensus 16 ~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~-~s~Dnskf~s~GgDk~v~v------- 85 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAA-LSSDNSKFASCGGDKAVQV------- 85 (307)
T ss_pred cccceEEEEEccCCCE-EEEcCCCceEEeecccccceeeeecCC-Cceeeecc-ccccccccccCCCCceEEE-------
Confidence 4689999999999999 78888899999999877 44466777 55566655 4456678888887776655
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
||+.+|+.++.|.+|...||.+.|+.+...+++|+.|.+|++||.|+.
T Consensus 86 --------------------------------wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 86 --------------------------------WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred --------------------------------EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 888999999999999999999999999999999999999999999965
Q ss_pred --cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC
Q 005325 219 --SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 219 --~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
++++.|... ...|.+|..+ +..|++|+.||+++.||+|.+.... .. +.||++++|+| +++.
T Consensus 134 s~ePiQildea------~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~----g~pit~vs~s~---d~nc 197 (307)
T KOG0316|consen 134 SFEPIQILDEA------KDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF----GHPITSVSFSK---DGNC 197 (307)
T ss_pred CCCccchhhhh------cCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc----CCcceeEEecC---CCCE
Confidence 588888877 6899999997 6789999999999999999998754 34 45999999997 6777
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecCCCC--ceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEPTAG--KINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~--~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.|+++-|++|++.|..+|+++.+..+|.. .-.++|+......++++++||.+++|.+-.
T Consensus 198 ~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred EEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 88888999999999999999999999876 344677888888999999999999998654
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=232.94 Aligned_cols=239 Identities=17% Similarity=0.239 Sum_probs=213.5
Q ss_pred EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCC
Q 005325 99 FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQ 175 (702)
Q Consensus 99 ~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~ 175 (702)
+.+|.+. +.++.+.|...++++++.|++|.|||+......+.++. ..+.+++....+.+++++.|+.|..||++.
T Consensus 147 i~gHlgW--Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 147 ISGHLGW--VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhccce--EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 3456555 78888899889999999999999999996666666664 345889999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC
Q 005325 176 GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS 255 (702)
Q Consensus 176 g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~ 255 (702)
.++++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+|++..+.++..| ..+|.++.+.|. .-.+++|+.
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH------~~~V~~V~~~~~-dpqvit~S~ 297 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH------TNPVASVMCQPT-DPQVITGSH 297 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC------CCcceeEEeecC-CCceEEecC
Confidence 9999999999999999999999999999999999999999999999999998 799999999998 788999999
Q ss_pred CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 256 TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 256 DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
|++|++||++.++.+....| +...|.+++.+| ..++++++....|+-|++..|..+..+.+|.+.|++++.+.+
T Consensus 298 D~tvrlWDl~agkt~~tlt~-hkksvral~lhP----~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD- 371 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTH-HKKSVRALCLHP----KENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD- 371 (460)
T ss_pred CceEEEeeeccCceeEeeec-ccceeeEEecCC----chhhhhccCCccceeccCCccchhhccccccceeeeeeeccC-
Confidence 99999999999998774443 267899999998 778888888778999999999999999999999999987765
Q ss_pred CEEEEEeCCCcEEEEEc
Q 005325 336 GLLLLALDCSQIPSYFI 352 (702)
Q Consensus 336 ~~l~~a~~d~~I~~~~i 352 (702)
++++++++.+.|..|.-
T Consensus 372 ~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDW 388 (460)
T ss_pred ceEEEcCCceEEEEEec
Confidence 56889999999988863
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=6.3e-27 Score=243.68 Aligned_cols=280 Identities=13% Similarity=0.162 Sum_probs=236.3
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY- 135 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~- 135 (702)
.|+..|+++.|.|-.-+||++|+.|+.|+||++.. +...|.+|... +..+.++.+|..+++++.|++|++||+.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~--Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP--VRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhh--hhhhhccccCCeeeeeecceeeeeecccc
Confidence 47889999999996666699999999999999987 33477788444 7777799999999999999999999998
Q ss_pred Cce-EEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 136 GKH-YSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 136 g~~-~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
|.+ ..+.......++.++|.+++ +++|++++.|..||+.++++++.+..|.+.|+.+.|-+.+..+++.++|++|+||
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 433 33444555569999999966 6788889999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE----EEeeccCCCCeEEEEEeec
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI----RVKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l----~~~~h~~~~~I~sl~fsp~ 289 (702)
+.+..-.+..+..+ +.....||..+|+ +.++++-+.|+.|.||.+...-.+ .+.+|...+.-..+.|||
T Consensus 370 e~~~~v~ik~i~~~-----~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp- 442 (503)
T KOG0282|consen 370 ENRIPVPIKNIADP-----EMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP- 442 (503)
T ss_pred EcCCCccchhhcch-----hhccCcceecCCC-CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-
Confidence 99988766655444 1467889999999 999999999999999997653322 256776555667899998
Q ss_pred cCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC-CCEEEEEeCCCcEEEEE
Q 005325 290 INTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD-SGLLLLALDCSQIPSYF 351 (702)
Q Consensus 290 ~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~-~~~l~~a~~d~~I~~~~ 351 (702)
++.+|++| .+|.|.+||.++.+++..+..|..++..+.|+|. ...+++|+-+|.|.+|.
T Consensus 443 ---DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 ---DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 55555555 6999999999999999999999999999999994 45799999999999983
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.9e-26 Score=246.48 Aligned_cols=314 Identities=16% Similarity=0.182 Sum_probs=231.4
Q ss_pred CCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCE-EEEEEec
Q 005325 6 GEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEF-LIVSGIY 83 (702)
Q Consensus 6 g~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~-llatGs~ 83 (702)
+.+++-+...++.|+||++..+ ..++.| .||+.|.++.|.|+-.+ +|++|..
T Consensus 116 ~g~LlAtggaD~~v~VWdi~~~--------------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 116 TGTLLATGGADGRVKVWDIKNG--------------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred CCceEEeccccceEEEEEeeCC--------------------------EEEEEecCCCceEEEEEeCCccchhheeecCC
Confidence 3355666688999999999998 345556 48999999999998654 6899999
Q ss_pred CCcEEEEEcCCc-e--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE------------EecCC---
Q 005325 84 PPQVKVYELRQL-S--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS------------LRIPR--- 145 (702)
Q Consensus 84 dg~I~vwdl~~~-~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~------------~~i~~--- 145 (702)
|++|++||+... . ..+..|... +..+.+++|+..+++++.|+.|.+|+....... ...+.
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~--vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSA--VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhh--eeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 999999999852 2 255566544 666778888999999999999999986321000 00000
Q ss_pred ---------------------Cc--------------cceEEecCCCc--------------------------------
Q 005325 146 ---------------------MG--------------RDMAYNSWSCD-------------------------------- 158 (702)
Q Consensus 146 ---------------------~~--------------~~l~~~~~s~~-------------------------------- 158 (702)
.+ ..+++.+....
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence 00 00111111111
Q ss_pred -----------EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----ceeE
Q 005325 159 -----------LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS----SAAR 223 (702)
Q Consensus 159 -----------llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~----~v~~ 223 (702)
+++++..+.++++++.+..+. .+.+|...|.+++...+|-+|+||+.|.+|++|-+..+. ++..
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 334444444444544444332 456688889999966677899999999999999763221 2222
Q ss_pred EecccCC----------------------------------------------CCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 005325 224 INAVAPA----------------------------------------------GDADQEVTALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 224 l~~~~~~----------------------------------------------~~~~~~Vtslafspd~g~~LasGs~DG 257 (702)
..+|... ..|...|+|++++|+ ..+||+|+.|.
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDk 485 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-DKLIATGSQDK 485 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-CceEEeccccc
Confidence 2222110 236788999999999 99999999999
Q ss_pred eEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC
Q 005325 258 KVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 258 ~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~ 336 (702)
+.+||++.....+. +.+| ...|+++.|+| .+..+++++.|++|+||.+.+..++.++++|...|..+.|..++.
T Consensus 486 taKiW~le~~~l~~vLsGH--~RGvw~V~Fs~---~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGH--TRGVWCVSFSK---NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred ceeeecccCceEEEEeeCC--ccceEEEEecc---ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 99999999777666 6888 67899999998 344444555799999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 005325 337 LLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 337 ~l~~a~~d~~I~~~~ip~ 354 (702)
.|++|+.+|-|.+|.|-.
T Consensus 561 qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKT 578 (775)
T ss_pred EEEeccCCCcEEEEeccc
Confidence 999999999999999864
No 36
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=238.05 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=220.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEe-----eecCCceEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFE-----RHLDSEIINFEVLADDYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~-----~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~ 134 (702)
.+...|.++++.|.|.. |++|++|-.|++||+..+...+. .......+..+.+|+.+..|++++..-.++|++.
T Consensus 165 hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred CCceEEEEeeecCCCce-eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 45678999999999999 99999999999999988443221 1223445777788999999998888888899887
Q ss_pred CCceEEE-----------ecCCCc----cceEEecCCCc-EEEEecCCCEEEEECCCCeE-EEEeec-----CCCCeEEE
Q 005325 135 YGKHYSL-----------RIPRMG----RDMAYNSWSCD-LLCAASSPELYRINLEQGRF-LSSLNT-----QSPALNVV 192 (702)
Q Consensus 135 ~g~~~~~-----------~i~~~~----~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~-~~~l~~-----h~~~V~~l 192 (702)
.|....- ...+.+ .+.+|+|.+.. +++++.|+++++||+...+. +..+.. ..-.+++|
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 7633221 111222 15566776665 88999999999999876532 222322 22378999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCc--ceeEE-ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-
Q 005325 193 SRSKLHGLIACGGEDGAVECFDMRMRS--SAARI-NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY- 268 (702)
Q Consensus 193 ~~sp~~~llasgs~DG~V~iWD~~t~~--~v~~l-~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~- 268 (702)
+|+|++.+||+|+.||.|.+|+.++.. +...+ ..| .....|+||+||++ |++|++-+.|++++|||||+.+
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH----~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH----LPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEeeecc----CCCCceeEEEeccc-cchhhhccCCCceeeeecccccc
Confidence 999999999999999999999987543 22222 233 11358999999999 9999999999999999999854
Q ss_pred EEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeC-------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 269 PIRV-KDHMFDSPIVDIKWHQSINTERPKLITTD-------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 269 ~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
|+.+ .+.....+-+.++|+| +..||+++. .+++.+||..+...++.|......|..+.|+|.-+.|++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSP----d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSP----DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred chhhhcCCCccCCCCccccCC----CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 6653 3333456789999999 666666542 678999999999999999887889999999999999999
Q ss_pred EeCCCcEEEEEcCCCC
Q 005325 341 ALDCSQIPSYFIPDLG 356 (702)
Q Consensus 341 a~~d~~I~~~~ip~lg 356 (702)
++.+|.+++||-|...
T Consensus 475 gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 475 GSGDGTAHVYYDPNES 490 (641)
T ss_pred ecCCCceEEEECcccc
Confidence 9999999999998753
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=4.6e-26 Score=224.88 Aligned_cols=251 Identities=15% Similarity=0.189 Sum_probs=211.2
Q ss_pred EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc----ceEEecCCCcEEEEecCCCEEEEE
Q 005325 97 LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR----DMAYNSWSCDLLCAASSPELYRIN 172 (702)
Q Consensus 97 ~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~----~l~~~~~s~~llv~s~d~~V~vwd 172 (702)
+...+| .++ +..+.|+|+|..||+++.|+.|.+|+.+|.+...-.++.+. .+.+...+..+++++.|.+|+.||
T Consensus 41 m~l~gh-~ge-I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGH-KGE-IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCC-cce-EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 344555 443 55566888999999999999999999998777665555443 667777788899999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 173 LEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 173 l~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
.++|+.++.+++|...|++++-+..+ .++.+|+.||++++||+|+..++.++... .++++++|... +..+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-------yqltAv~f~d~-s~qv~ 190 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-------YQLTAVGFKDT-SDQVI 190 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-------eeEEEEEeccc-cccee
Confidence 99999999999999999999965555 78889999999999999999999998776 78999999999 99999
Q ss_pred EEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC----CceeEEecCCCC--
Q 005325 252 VGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET----GESMTSIEPTAG-- 324 (702)
Q Consensus 252 sGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t----g~~l~~i~~h~~-- 324 (702)
+|+-|+.|++||+|.+..++ +.+| ..+|+.|..+| .+.+++.-+.|.+|++||++- ..++..+.+|..
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~---~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSR---YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eccccCceeeeccccCcceEEeecc--cCceeeEEecc---CCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 99999999999999998877 6888 78999999998 567777778899999999974 344666666543
Q ss_pred --ceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCcc
Q 005325 325 --KINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWC 362 (702)
Q Consensus 325 --~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wc 362 (702)
....++|+|++..+..++.|..+++|..-..+..-+|-
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 45568899999999999999999999887766554443
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=210.71 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=223.6
Q ss_pred eeeeeccc-CCCceeEEEECCC-CCEEEEEEecCCcEEEEEcCC-ceEEE-----eeecCCceEEEEEEcCCCCEEEEEE
Q 005325 53 VELIQDLW-FETATTKIRETPD-GEFLIVSGIYPPQVKVYELRQ-LSLKF-----ERHLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 53 ieliqd~~-~~~~v~~i~~SpD-G~~llatGs~dg~I~vwdl~~-~~~~~-----~~h~~~~vv~~~~ls~dg~~Las~s 124 (702)
+.+++.+. |++.+..++|+|- |.. |||++.|..|+||++.. .+..+ ..|..+ +..++++|.|++|++++
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~i-lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVI-LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASAS 80 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceE-EEeecCCceEEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEee
Confidence 44555553 6778999999998 764 99999999999999984 22222 235444 78888999999999999
Q ss_pred CCCeEEEEecCC-ceEEEec-CC---CccceEEecCCCcEEEEecCCCEEEEECCCC---eEEEEeecCCCCeEEEEEcC
Q 005325 125 ADRSISLHAKYG-KHYSLRI-PR---MGRDMAYNSWSCDLLCAASSPELYRINLEQG---RFLSSLNTQSPALNVVSRSK 196 (702)
Q Consensus 125 ~D~~I~iw~~~g-~~~~~~i-~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g---~~~~~l~~h~~~V~~l~~sp 196 (702)
.|.++.||...+ ....+.. .. ...++++......|++++.+..|.+|.+..+ .++..++.|+..|..+.|+|
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999999998773 3222222 12 2338888888888999999999999987643 56788999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECC---CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 005325 197 LHGLIACGGEDGAVECFDMR---MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~---t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~ 273 (702)
...+|++++.|.+|++|.-. .-.++++|..+ ...|.+++|+|. |..|++++.|++|+||-+.+.-
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~------~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~----- 228 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH------ENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDL----- 228 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEecCc------cceEEEEEecCC-CceEEEecCCcceEeeeeccCc-----
Confidence 99999999999999999876 33578889888 679999999999 9999999999999999877432
Q ss_pred eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC------ceeE-EecCCCCceeEEEEEcC-CCEEEEEeCCC
Q 005325 274 DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG------ESMT-SIEPTAGKINDVCVFKD-SGLLLLALDCS 345 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg------~~l~-~i~~h~~~I~~v~~~p~-~~~l~~a~~d~ 345 (702)
.+.+..++..+.|. ++.+.+++.|+.|+|+....+ +++. .-..|...||+|.|.|. .+.|+++++||
T Consensus 229 ~~~~sr~~Y~v~W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 229 SGMHSRALYDVPWD-----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred chhcccceEeeeec-----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 22336789999996 455666778999999987643 1222 23468889999999994 78999999999
Q ss_pred cEEEEEc
Q 005325 346 QIPSYFI 352 (702)
Q Consensus 346 ~I~~~~i 352 (702)
.+.+|.+
T Consensus 304 ~v~~W~l 310 (312)
T KOG0645|consen 304 IVNFWEL 310 (312)
T ss_pred eEEEEEe
Confidence 9999965
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.9e-24 Score=225.46 Aligned_cols=285 Identities=15% Similarity=0.127 Sum_probs=231.9
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECC----CeEEEE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCAD----RSISLH 132 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D----~~I~iw 132 (702)
-+|...++..+|||.|-| +|+|...|.|+|||..+ ..++.+...-+..+.-+.++.|+..|+..+.. +.+.+|
T Consensus 56 tEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 367888999999999999 99999999999999987 33333333333345556677888998877763 356677
Q ss_pred ecCCceEEEecCCCcc---ceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC
Q 005325 133 AKYGKHYSLRIPRMGR---DMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG 208 (702)
Q Consensus 133 ~~~g~~~~~~i~~~~~---~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG 208 (702)
+.....-.+ ..+.+ ++.+-|..+. +++++.|+.|-+|.-.-.+|-.++..|+..|+|+.|+|+|.+|++.+.||
T Consensus 135 DSG~SvGei--~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 135 DSGNSVGEI--TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred cCCCcccee--eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 766433222 22222 4444444443 78899999999999888899999999999999999999999999999999
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc--CCCCeEEEEE
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM--FDSPIVDIKW 286 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~--~~~~I~sl~f 286 (702)
+|.|||-.++..+..|... ..|.+.|.+|+|+|| +..|++++.|.+++|||+.+.+++...... -...-..+.|
T Consensus 213 ki~iyDGktge~vg~l~~~---~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDS---DAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cEEEEcCCCccEEEEecCC---CCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 9999999999999999842 356899999999999 999999999999999999999877643331 1233455667
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
. ...|++.+.+|+|.+++...+.++..+.+|...|++++.+|++..|++|+.||.|..|.+-..
T Consensus 289 q-----kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 289 Q-----KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred e-----CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 5 678888899999999999999999999999999999999999999999999999999988653
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-25 Score=241.38 Aligned_cols=280 Identities=12% Similarity=0.171 Sum_probs=225.4
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
+..+..++|+|.-.+ +.++-..|.|.+||..- +.-+|..| +++ |..+.|+|....+++|+.|-.|++|+.....+
T Consensus 9 SsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~rFdeH-dGp-VRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDRFDEH-DGP-VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhhhhcc-CCc-cceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 355778999999999 78889999999999876 44588888 443 66777889999999999999999999886544
Q ss_pred EEecC---CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 140 SLRIP---RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 140 ~~~i~---~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
.+.+. .+.+.+.|++.-+-+++++.|-+|++||..++.++..+++|...|.|..|+|...+++++|-|.+|++||+.
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 44443 355688888888889999999999999999999999999999999999999999999999999999999986
Q ss_pred CCc-----ce------------eEEecc------cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--
Q 005325 217 MRS-----SA------------ARINAV------APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-- 271 (702)
Q Consensus 217 t~~-----~v------------~~l~~~------~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-- 271 (702)
.-+ +. ..+-.. .-..+|...|+.++|+|. -..|++|+.|..|++|.+...+...
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccceeeh
Confidence 311 11 000000 011467899999999999 8899999999999999988655433
Q ss_pred -EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 272 -VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 272 -~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
..+| -.+|.++-||| ....+++.+.|++|+|||+..-+.+.++.......+.++.+|..++++.|- |+-|.+|
T Consensus 245 tcrgH--~nnVssvlfhp---~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF 318 (1202)
T KOG0292|consen 245 TCRGH--YNNVSSVLFHP---HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF 318 (1202)
T ss_pred hhhcc--cCCcceEEecC---ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence 5677 57999999998 344555566899999999999999999977678899999999888555444 4444444
Q ss_pred E
Q 005325 351 F 351 (702)
Q Consensus 351 ~ 351 (702)
-
T Consensus 319 k 319 (1202)
T KOG0292|consen 319 K 319 (1202)
T ss_pred E
Confidence 3
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=5.1e-24 Score=254.54 Aligned_cols=255 Identities=16% Similarity=0.262 Sum_probs=207.6
Q ss_pred CCcEEEEEcCCceEEE-------eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-------eE-EEec--CCC
Q 005325 84 PPQVKVYELRQLSLKF-------ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-------HY-SLRI--PRM 146 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~-------~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-------~~-~~~i--~~~ 146 (702)
+|.+++|+...+.... ..| ...+..+.|++++.+||+++.|+.|+||+.... +. ...+ ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNS--SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCc
Confidence 5668888888744321 123 334777889999999999999999999986421 01 1111 112
Q ss_pred ccceEEecCC-CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEE
Q 005325 147 GRDMAYNSWS-CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 147 ~~~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l 224 (702)
..++++++.. ..+++++.++.|.+||+.+++.+..+..|...|++|+|+| ++.+|++|+.||+|++||++++..+..+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 2366776654 3478888999999999999999999999999999999997 6789999999999999999999988888
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
..+ ..|.++.|++.+|.+|++|+.||.|++||+++.. ++. +..| ..+|.++.|.+ +..+++++.|
T Consensus 615 ~~~-------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~~----~~~lvs~s~D 681 (793)
T PLN00181 615 KTK-------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH--SKTVSYVRFVD----SSTLVSSSTD 681 (793)
T ss_pred ecC-------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC--CCCEEEEEEeC----CCEEEEEECC
Confidence 765 6899999965449999999999999999999865 443 5566 67999999974 6677788899
Q ss_pred CEEEEEeCCC------CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 303 HIVRIWDPET------GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 303 g~V~IWd~~t------g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
++|+|||+.. +.++..+.+|...++.++|+|++.+|++++.|+.|.+|...
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9999999974 36788899999999999999999999999999999999854
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=241.54 Aligned_cols=241 Identities=18% Similarity=0.273 Sum_probs=205.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCce--EEEecCC---CccceEEecCCCcEEEEecCCCEEEEEC-CCCeEEEE
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKH--YSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINL-EQGRFLSS 181 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~--~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl-~~g~~~~~ 181 (702)
+.++.++++|..+++++.|+.|.+|+..... ....+.. ...+++|.+.+..++.++.|.+|++||+ ..+..+++
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 5668899999999999999999999986333 1211222 2337888888888999999999999999 66689999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 005325 182 LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI 261 (702)
Q Consensus 182 l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l 261 (702)
+.+|...|++++|+|.++++++|+.|++|+|||+++++++..+..| ...|++++|+++ +.+|++++.||.|+|
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h------s~~is~~~f~~d-~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH------SDGISGLAFSPD-GNLLVSASYDGTIRV 314 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc------CCceEEEEECCC-CCEEEEcCCCccEEE
Confidence 9999999999999999999999999999999999999999999999 789999999999 999999999999999
Q ss_pred EEcCCCe--EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCc---eeEEEEEcCC
Q 005325 262 YDLRSSY--PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGK---INDVCVFKDS 335 (702)
Q Consensus 262 wDlrs~~--~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~---I~~v~~~p~~ 335 (702)
||+.++. ++. +..+....++++++|+| ++.++++++.|+.|++||+..+..+..+.+|... +.+...++.+
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp---~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSP---NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECC---CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999998 344 44553222799999998 5667777778999999999999999999998775 3344556788
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCC
Q 005325 336 GLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 336 ~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
.++++++.++.|.+|.+......
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchh
Confidence 99999999999999999876554
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.1e-25 Score=243.71 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=208.2
Q ss_pred eecc--cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEee----------ecCCceEEEEEEcC-----CC
Q 005325 56 IQDL--WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFER----------HLDSEIINFEVLAD-----DY 117 (702)
Q Consensus 56 iqd~--~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~----------h~~~~vv~~~~ls~-----dg 117 (702)
.|++ .|.++|.++.||+||+| ||+|+.|+.|+||.+..... .... ...+. +.-...++ ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~-~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQ-IEPSTSSEEKISSRT 336 (712)
T ss_pred eeccccccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccc-cCccccccccccccc
Confidence 4555 48899999999999999 99999999999999876111 0000 00000 00000000 00
Q ss_pred CEEEEEECCCeEEEEecCCceEEE--e-cCCCccceEEecCCCc--EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEE
Q 005325 118 SKLAFLCADRSISLHAKYGKHYSL--R-IPRMGRDMAYNSWSCD--LLCAASSPELYRINLEQGRFLSSLNTQSPALNVV 192 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g~~~~~--~-i~~~~~~l~~~~~s~~--llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l 192 (702)
...-.+.....+.+.......... . +..+..+|....|+.+ |++++.|.+|++|++....++..| .|.+.|+||
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 001111111112221111111111 1 1123337788888766 899999999999999999999988 699999999
Q ss_pred EEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 193 SRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 193 ~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
+|+|.. ++|++|+-||.|+||++...+.+.-..++ .-||+++|.|+ |...++|+.+|.+++|++...+...
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-------~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-------DLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhh-------hhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEE
Confidence 999966 99999999999999999988877777776 89999999999 9999999999999999999877554
Q ss_pred ---Eeecc----CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCC--ceeEEEEEcCCCEEEEEe
Q 005325 272 ---VKDHM----FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAG--KINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 272 ---~~~h~----~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~--~I~~v~~~p~~~~l~~a~ 342 (702)
+..|. -+..|+.+.|.| .....+|+++.|..|+|+|.++-.++..+.++.. .-....|+.++..|++++
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p--~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFP--GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eeeEeeccCccccCceeeeeEecC--CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 22221 123799999998 3344699999999999999988888888876432 334466888999999999
Q ss_pred CCCcEEEEEcCCCC
Q 005325 343 DCSQIPSYFIPDLG 356 (702)
Q Consensus 343 ~d~~I~~~~ip~lg 356 (702)
+|..|++|.+++..
T Consensus 566 eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 566 EDSWVYIWKNDSFN 579 (712)
T ss_pred cCceEEEEeCCCCc
Confidence 99999999986654
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=222.37 Aligned_cols=279 Identities=13% Similarity=0.146 Sum_probs=233.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE----------EEeeecCCceEEEEEEcCCCCEEEEEECCCeEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL----------KFERHLDSEIINFEVLADDYSKLAFLCADRSIS 130 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~----------~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~ 130 (702)
-.+.+.|..|||||+| |++|+.||-|.||+..+..+ .|.-+.+ .+-++.||.|...||+++.||.|+
T Consensus 212 ~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~--aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDD--AVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhcceeeccc--ceEEEeecccHHHhhccCcCCcEE
Confidence 3466889999999999 99999999999999987222 2333323 367778999999999999999999
Q ss_pred EEecC-CceEE-Ee--cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc
Q 005325 131 LHAKY-GKHYS-LR--IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 131 iw~~~-g~~~~-~~--i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~ 206 (702)
+|.+. |.+.. +. ..+...++.|...+..+++++.|.++.+--+.+|++++.|.+|++.|+...|.++|+.+++++.
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99887 43322 11 1233347888888888999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-E-eeccCCCCeEEE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-V-KDHMFDSPIVDI 284 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~-~~h~~~~~I~sl 284 (702)
||+|++|+..+..|+.++... +...+|.++-.-|.+...++++...++|.|.++.. +.+. + .+...++...+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPL----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINA 443 (508)
T ss_pred CccEEEecCcchhhhhhccCC----CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEE
Confidence 999999999999999999876 23578999999888788999999999999999864 3333 2 233335566677
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
+.+| .+..+.+.+.|+.++.|.+.+|++-.++..|...|-.++.+|..++|++-++|+.+..|
T Consensus 444 ~lSp---kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 444 ILSP---KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EecC---CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 7888 45666677799999999999999999999999999999999999999999999998887
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=207.13 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=226.0
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY- 135 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~- 135 (702)
|-..|.+|+|+.+|.. +|+|+.|+.+.||++.... ....+| ...+.+++|..+....+++++.|++|++|+..
T Consensus 19 ~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~~~gh-~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKELVYRGH-TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhhcccCC-CcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 5577899999999999 9999999999999998743 245566 44478888888888999999999999999988
Q ss_pred CceEE-EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 136 GKHYS-LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 136 g~~~~-~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
+.... +........++|.|....+++++.+..|..+|..+.+.+...+... .++-++|+.++++|+..+..|+|.|..
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~v~ILs 175 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWNNSNDLFFLTNGLGCVEILS 175 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeecCCCCEEEEecCCceEEEEe
Confidence 33332 3333333488899999999999999999999999888877665443 688899997778887777779999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
...-+++.++..| .....||.|+|+ |.+||+|+.|-.|.|||+..--++. +..+ .-||..|.|+. +
T Consensus 176 ypsLkpv~si~AH------~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~----d 242 (313)
T KOG1407|consen 176 YPSLKPVQSIKAH------PSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSH----D 242 (313)
T ss_pred ccccccccccccC------CcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccc--cCceEEEEecc----C
Confidence 9999999999998 688999999999 9999999999999999998876666 4445 67999999995 5
Q ss_pred CCeEEE-eCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 294 RPKLIT-TDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 294 ~~ll~s-s~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
+.+|++ +.|..|-|=++.+|..+..|+. .++.+.|+|+|...+|+.++++.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence 555555 5799999999999999999997 99999999999999999998764
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.2e-24 Score=228.66 Aligned_cols=258 Identities=15% Similarity=0.143 Sum_probs=209.9
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeeccc-CCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLW-FETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
+|.+--.++|.|||-... .++..|+ ...+|.+.+|-+--++ +++|+.|.+|+
T Consensus 28 ~la~LynG~V~IWnyetq--------------------------tmVksfeV~~~PvRa~kfiaRknW-iv~GsDD~~Ir 80 (794)
T KOG0276|consen 28 ILAALYNGDVQIWNYETQ--------------------------TMVKSFEVSEVPVRAAKFIARKNW-IVTGSDDMQIR 80 (794)
T ss_pred EEEeeecCeeEEEecccc--------------------------eeeeeeeecccchhhheeeeccce-EEEecCCceEE
Confidence 455566788889888776 2334444 2456788888888899 89999999999
Q ss_pred EEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC----CccceEEecCCCc-EEE
Q 005325 89 VYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR----MGRDMAYNSWSCD-LLC 161 (702)
Q Consensus 89 vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~----~~~~l~~~~~s~~-llv 161 (702)
||+.+++. ..|+.|.+. +.++..+|.-.++++++.|-+|++|+-.+.....+.-. +.-+++++|..++ +++
T Consensus 81 Vfnynt~ekV~~FeAH~Dy--IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDY--IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEecccceeeEEeeccccc--eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 99999944 478888776 88888888889999999999999999986544433322 2228888887766 788
Q ss_pred EecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 162 AASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 162 ~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
++-|.+|.+|.+.+..+..++.+|...||||++-+-+ .+|++|++|.+|+|||..+.+|++++.+| ...|++
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH------t~Nvs~ 232 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH------TNNVSF 232 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc------cccceE
Confidence 8999999999999999999999999999999998766 89999999999999999999999999999 789999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
++|+|. -..|++|+.||+|+||...+-+...+...+ ...|++|+-.+ .++.++++.+.+.|.|
T Consensus 233 v~fhp~-lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k---~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 233 VFFHPE-LPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHK---GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCC-CcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecC---CCCeEEEeccCCcEEE
Confidence 999999 899999999999999998886655433332 46899999886 3455555556665543
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=3.1e-23 Score=212.45 Aligned_cols=266 Identities=15% Similarity=0.289 Sum_probs=205.5
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
+++|. +++.++.++.|.||++..+ ..+ .....+...+.++.|+|++++ +++++
T Consensus 18 ~~~~~-~l~~~~~~g~i~i~~~~~~-~~~------------------------~~~~~~~~~i~~~~~~~~~~~-l~~~~ 70 (289)
T cd00200 18 SPDGK-LLATGSGDGTIKVWDLETG-ELL------------------------RTLKGHTGPVRDVAASADGTY-LASGS 70 (289)
T ss_pred cCCCC-EEEEeecCcEEEEEEeeCC-CcE------------------------EEEecCCcceeEEEECCCCCE-EEEEc
Confidence 45655 3566666889999999887 210 011134566789999999988 88889
Q ss_pred cCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEecCCC
Q 005325 83 YPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSC 157 (702)
Q Consensus 83 ~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~ 157 (702)
.++.|.+|++.. ....+..| ... +..+.+++++..+++++.|+.|.+|+.........+.. ...++.+.+.+.
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~-~~~-i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGH-TSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred CCCeEEEEEcCcccceEEEecc-CCc-EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 999999999987 33345555 223 45555667777778777799999999873322222222 233677776644
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
.+++++.++.|++||+.+++.+..+..|...|.+++|+|++..+++++.++.|.+||+++++.+..+..+ ...|
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~i 222 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH------ENGV 222 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc------CCce
Confidence 3444444999999999999999999999989999999999999999999999999999998888887666 5799
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
++++|+|+ +.++++++.+|.|++||+.++.++. +..| ..+|.+++|+| ++..+++++.|+.|+||+
T Consensus 223 ~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~---~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 223 NSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSP---DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECC---CCCEEEEecCCCeEEecC
Confidence 99999999 8999998889999999999888766 4555 67899999997 445666677899999996
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=215.63 Aligned_cols=282 Identities=13% Similarity=0.175 Sum_probs=226.7
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--------------------ceEEEeeecCCceEEEEEEcCCCC
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--------------------LSLKFERHLDSEIINFEVLADDYS 118 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--------------------~~~~~~~h~~~~vv~~~~ls~dg~ 118 (702)
-.|..+|.+.+|||||.+ +|||+.|..|+|+|+.. ....+-.|.+. +..+.|+|...
T Consensus 109 t~HK~~cR~aafs~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de--vn~l~FHPre~ 185 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE--VNDLDFHPRET 185 (430)
T ss_pred eecccceeeeeeCCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc--ccceeecchhh
Confidence 357889999999999999 99999999999999873 11233345444 67777888889
Q ss_pred EEEEEECCCeEEEEecCCce-----EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeE
Q 005325 119 KLAFLCADRSISLHAKYGKH-----YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALN 190 (702)
Q Consensus 119 ~Las~s~D~~I~iw~~~g~~-----~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~ 190 (702)
.|++++.|++|++++..... ..+.-....+++.|+|.+..|+++..-..+++||+++-++..+- ..|++.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 99999999999999876321 11222334568999998888999998899999999998876543 45889999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 005325 191 VVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI 270 (702)
Q Consensus 191 ~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l 270 (702)
++.+++.+++.++|+.||.|+|||--+++|+.++...+ ....|++..|..+ |.+|++.+.|..|+||.+.+++++
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH----~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH----GGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc----CCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceE
Confidence 99999999999999999999999999999999987652 2578999999999 999999999999999999999988
Q ss_pred EEe-eccCC---CCeEEEEEeeccCCCCCeEEEeC--CCEEEEEeCCCCceeEEe-cCCCCceeEEEEEcCCCEEEEEeC
Q 005325 271 RVK-DHMFD---SPIVDIKWHQSINTERPKLITTD--NHIVRIWDPETGESMTSI-EPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 271 ~~~-~h~~~---~~I~sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~tg~~l~~i-~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
... +.+.. .--+...|+. ...+++.-+ .+.++-||.+++..+..+ -+|++.+..+..+|....+++|++
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNh----tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNH----TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred EEEecCCcccchhhhhhhhhcC----ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 743 22100 1123445663 445555443 778999999987655443 468999999999999999999999
Q ss_pred CCcEEEEEc
Q 005325 344 CSQIPSYFI 352 (702)
Q Consensus 344 d~~I~~~~i 352 (702)
|.+++.||-
T Consensus 417 D~raRFWyr 425 (430)
T KOG0640|consen 417 DFRARFWYR 425 (430)
T ss_pred cceeeeeee
Confidence 999999984
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=205.53 Aligned_cols=263 Identities=13% Similarity=0.234 Sum_probs=203.9
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+-+++.+..|+||+++++ .+ |.- ...+.+ .|..+|.+|+|+|.|+| ||+|++|.++.|
T Consensus 30 lAscg~Dk~vriw~~~~~-~s---~~c----------------k~vld~-~hkrsVRsvAwsp~g~~-La~aSFD~t~~I 87 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSG-DS---WTC----------------KTVLDD-GHKRSVRSVAWSPHGRY-LASASFDATVVI 87 (312)
T ss_pred EEeecCCceEEEEecCCC-Cc---EEE----------------EEeccc-cchheeeeeeecCCCcE-EEEeeccceEEE
Confidence 455567788999999876 33 321 112333 57788999999999998 999999999999
Q ss_pred EEcCC----ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCC----CccceEEecCCCcE
Q 005325 90 YELRQ----LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPR----MGRDMAYNSWSCDL 159 (702)
Q Consensus 90 wdl~~----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~----~~~~l~~~~~s~~l 159 (702)
|.-.. ....+++|.+. +.++.++++|++||+|+.|++|-||.+. +.+....+.. ....+.++|...-|
T Consensus 88 w~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENE--VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 98775 44478889666 8888899999999999999999999877 3333332222 22367777777779
Q ss_pred EEEecCCCEEEEECC---CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 160 LCAASSPELYRINLE---QGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 160 lv~s~d~~V~vwdl~---~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
++++.|++|.+|.-. .-.++.++.+|...|.+++|+|.|..|++++.|++|+||-..+. +.. .|...
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~-----~~sr~ 235 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSG-----MHSRA 235 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cch-----hcccc
Confidence 999999999999655 34688999999999999999999999999999999999987621 222 13688
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC--eEEE----EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSS--YPIR----VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~--~~l~----~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
++.++|. + ..||+++.|+.|+||-.... .|.. ...+.|+..|++++|+|. -.+.++++++||.|++|.+
T Consensus 236 ~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~--~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 236 LYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK--VSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC--CCCceeecCCCceEEEEEe
Confidence 9999998 4 58999999999999976642 2322 233344789999999982 2567777789999999986
Q ss_pred C
Q 005325 311 E 311 (702)
Q Consensus 311 ~ 311 (702)
.
T Consensus 311 ~ 311 (312)
T KOG0645|consen 311 E 311 (312)
T ss_pred c
Confidence 4
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.9e-24 Score=222.93 Aligned_cols=261 Identities=17% Similarity=0.293 Sum_probs=194.5
Q ss_pred ccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce------------EEEeeecCCceEEEEEEcCCC
Q 005325 50 QRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS------------LKFERHLDSEIINFEVLADDY 117 (702)
Q Consensus 50 ~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~------------~~~~~h~~~~vv~~~~ls~dg 117 (702)
...|++.+.+.|++.|+.++.-|....|+||++..+.|.|||..... +.+.+|.. +-..+.|-...-
T Consensus 112 ~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~ 190 (422)
T KOG0264|consen 112 SGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQE 190 (422)
T ss_pred ccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccc
Confidence 34789999999999999999999999999999999999999987611 13344433 112233333333
Q ss_pred CEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC
Q 005325 118 SKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL 197 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~ 197 (702)
..|++++.|++|++|++....... ..-.....+.+|...|+.++|+|.
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~--------------------------------~~~~p~~~~~~h~~~VeDV~~h~~ 238 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKED--------------------------------KVVDPKTIFSGHEDVVEDVAWHPL 238 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCC--------------------------------ccccceEEeecCCcceehhhcccc
Confidence 444455555555554443211000 001234567899999999999998
Q ss_pred C-CEEEEEEcCCeEEEEECCC--CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE-E
Q 005325 198 H-GLIACGGEDGAVECFDMRM--RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR-V 272 (702)
Q Consensus 198 ~-~llasgs~DG~V~iWD~~t--~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~-~ 272 (702)
+ .+|++++.|+.+.|||+|+ .++......| ...|.|++|+|-++..||+|+.|++|.|||+|+-. ++. +
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCCCCccccccc------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 8 8999999999999999995 3444444444 89999999999878899999999999999999843 444 6
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCC-C-------------ceeEEecCCCCceeEEEEEcCCC-
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPET-G-------------ESMTSIEPTAGKINDVCVFKDSG- 336 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~t-g-------------~~l~~i~~h~~~I~~v~~~p~~~- 336 (702)
.+| ...|.+|.|+| ....+++ ++.|+.+.|||+.. | +++..-.+|...|+++.|+|+.+
T Consensus 313 e~H--~dev~~V~WSP---h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 313 EGH--EDEVFQVEWSP---HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred cCC--CcceEEEEeCC---CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 777 78999999999 3344444 55799999999964 1 23566678999999999999776
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 005325 337 LLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 337 ~l~~a~~d~~I~~~~ip~ 354 (702)
.|+++.+|..+++|....
T Consensus 388 ~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEecCCceEEEeeccc
Confidence 577788999999998653
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1e-25 Score=225.31 Aligned_cols=265 Identities=13% Similarity=0.188 Sum_probs=213.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY 139 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~ 139 (702)
..|.|+.+. ... +++|..|.+|+|||.+++. .++.+|+++ ++++.-+...|++|+.|.+|++|+.. |...
T Consensus 198 kgVYClQYD--D~k-iVSGlrDnTikiWD~n~~~c~~~L~GHtGS----VLCLqyd~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYD--DEK-IVSGLRDNTIKIWDKNSLECLKILTGHTGS----VLCLQYDERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEec--chh-hhcccccCceEEeccccHHHHHhhhcCCCc----EEeeeccceEEEecCCCceEEEEeccCCchh
Confidence 567788774 333 7999999999999999843 477888666 34444555899999999999999998 5555
Q ss_pred EEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeE---EEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 140 SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRF---LSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 140 ~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~---~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
.+-+.+....+-....++.+++++.|.++.+||+....- .+.+.+|...|+.+.|+. .++++++.|.+|++|++.
T Consensus 271 ~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEecc
Confidence 554443333333334455578888999999999987643 345778999999999974 499999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
+...+.++..| ...|-|+.+. +.++++|++|.+|+|||+..|.++. +.+| ..-|.+|.|. +..
T Consensus 349 t~efvRtl~gH------kRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd-----~kr 412 (499)
T KOG0281|consen 349 TCEFVRTLNGH------KRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD-----NKR 412 (499)
T ss_pred ceeeehhhhcc------cccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec-----Cce
Confidence 99999999998 7899999986 8899999999999999999999988 6778 7789999996 678
Q ss_pred eEEEeCCCEEEEEeCCCCc---------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 296 KLITTDNHIVRIWDPETGE---------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~---------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++.++-||.|+|||+.++. ++.++-.|++.|-.+.|.. -.+++++.+..|.+|..-.
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCC
Confidence 8888899999999998653 3444556788888887743 4688999999999997644
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.7e-24 Score=229.18 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=219.9
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
+++.+.....|.+|+-..+ + +..+.+|. ...|+++.|+++|.+ ||+|..+|.|.
T Consensus 189 n~laValg~~vylW~~~s~-~-----------------------v~~l~~~~-~~~vtSv~ws~~G~~-LavG~~~g~v~ 242 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSG-S-----------------------VTELCSFG-EELVTSVKWSPDGSH-LAVGTSDGTVQ 242 (484)
T ss_pred CeEEEEecceEEEEecCCC-c-----------------------eEEeEecC-CCceEEEEECCCCCE-EEEeecCCeEE
Confidence 4688888899999999998 2 33445554 889999999999999 99999999999
Q ss_pred EEEcCCc--eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCC
Q 005325 89 VYELRQL--SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSP 166 (702)
Q Consensus 89 vwdl~~~--~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~ 166 (702)
|||..+. ...+..++... +.++.+. ...+.+|+.|+.|.+|++
T Consensus 243 iwD~~~~k~~~~~~~~h~~r-vg~laW~--~~~lssGsr~~~I~~~dv-------------------------------- 287 (484)
T KOG0305|consen 243 IWDVKEQKKTRTLRGSHASR-VGSLAWN--SSVLSSGSRDGKILNHDV-------------------------------- 287 (484)
T ss_pred EEehhhccccccccCCcCce-eEEEecc--CceEEEecCCCcEEEEEE--------------------------------
Confidence 9998772 22344422332 3333333 467777888887777553
Q ss_pred CEEEEECCCCeEEE-EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 167 ELYRINLEQGRFLS-SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 167 ~V~vwdl~~g~~~~-~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
...+.+. .+.+|...|..+.|++++.+||+|+.|+.|.|||.....++..+..| ...|.+++|+|-
T Consensus 288 -------R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H------~aAVKA~awcP~ 354 (484)
T KOG0305|consen 288 -------RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH------TAAVKALAWCPW 354 (484)
T ss_pred -------ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc------ceeeeEeeeCCC
Confidence 3332222 37789999999999999999999999999999999888888888888 799999999998
Q ss_pred CCCEEEEE--eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe--CCCEEEEEeCCCCceeEEecC
Q 005325 246 GGFLMGVG--SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT--DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 246 ~g~~LasG--s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss--~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
....||+| +.|++|++||+.++..+...+. +..|.+|.|+| ....++++- .++.|.||+..+.+.+..+.+
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk---~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSK---KYKELLSTHGYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcC---CCCEEEEecCCCCCcEEEEeccccceeeeecC
Confidence 67889886 5699999999999999886666 68999999998 334455554 488999999999999999999
Q ss_pred CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 322 TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 322 h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
|...|..++++|++..+++|+.|.++++|.+-...
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999999999999999876543
No 53
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-22 Score=192.31 Aligned_cols=294 Identities=15% Similarity=0.205 Sum_probs=227.7
Q ss_pred ccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--------------ceEEE--eeecCCceEEEEEE
Q 005325 50 QRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--------------LSLKF--ERHLDSEIINFEVL 113 (702)
Q Consensus 50 ~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--------------~~~~~--~~h~~~~vv~~~~l 113 (702)
+...+.|..++-..+|.+++|+|.|.. .|+|+...+++|--... .+..+ ..|.... +.+.++
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~l-yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs-iyc~~w 97 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGGL-YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS-IYCTAW 97 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCce-EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc-EEEEEe
Confidence 345677788888899999999999998 89999999988875433 12222 2343332 566778
Q ss_pred cCCCCEEEEEECCCeEEEEecC-------CceEEEecC-CCccceEEecCCCc---EEEEec--CCCEEEEECCCCeEEE
Q 005325 114 ADDYSKLAFLCADRSISLHAKY-------GKHYSLRIP-RMGRDMAYNSWSCD---LLCAAS--SPELYRINLEQGRFLS 180 (702)
Q Consensus 114 s~dg~~Las~s~D~~I~iw~~~-------g~~~~~~i~-~~~~~l~~~~~s~~---llv~s~--d~~V~vwdl~~g~~~~ 180 (702)
|++|..|+++++|.+|++.... |....+.+. ...++++|...... +++.+. +..||+-|-.+|+...
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999987433 333334433 34458888755433 443333 3458888999999999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC-CCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA-GDADQEVTALEFDSNGGFLMGVGSSTGKV 259 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~-~~~~~~Vtslafspd~g~~LasGs~DG~V 259 (702)
.+.+|++.|.++- +-++-+|++|+.|.+|++||++...++.++...... .-....|.+++..|. |.+|++|..|...
T Consensus 178 a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps-grll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGHADSSC 255 (350)
T ss_pred eecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC-cceeeeccCCCce
Confidence 9999999998874 234779999999999999999999999888765211 122478999999999 9999999999999
Q ss_pred EEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC-eEEEeCCCEEEEEeCCC----CceeEEecCCCCceeEEEEEc
Q 005325 260 LIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP-KLITTDNHIVRIWDPET----GESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 260 ~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~-ll~ss~Dg~V~IWd~~t----g~~l~~i~~h~~~I~~v~~~p 333 (702)
.+||+|.++++. +..| ...|.++.|+| +.+ +++++-|..|++-|+.. .-++..+..|...+..+.|+|
T Consensus 256 ~lydirg~r~iq~f~ph--sadir~vrfsp----~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPH--SADIRCVRFSP----GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred EEEEeeCCceeeeeCCC--ccceeEEEeCC----CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 999999999987 6666 78999999999 555 55555799999999863 123445666888888999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 005325 334 DSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip 353 (702)
..-.+++.+.|..+..|.+|
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 98889999999999999765
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=218.73 Aligned_cols=251 Identities=14% Similarity=0.191 Sum_probs=213.2
Q ss_pred ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEE-EecCC-CccceEEecCCCcEEEEecCCCEEEE
Q 005325 95 LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYS-LRIPR-MGRDMAYNSWSCDLLCAASSPELYRI 171 (702)
Q Consensus 95 ~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~-~~i~~-~~~~l~~~~~s~~llv~s~d~~V~vw 171 (702)
+..+..+|-.+ +..+++.|+...+++++.|.+|++|+.. |.... ++-.. ...++.|...+..+++++.|-.+.+|
T Consensus 100 l~~~l~g~r~~--vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 100 LVQKLAGHRSS--VTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred chhhhhccccc--eeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 44556666444 7888899998888999999999999988 33321 11111 22378888888778888888889999
Q ss_pred ECCC-CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEE
Q 005325 172 NLEQ-GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLM 250 (702)
Q Consensus 172 dl~~-g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~L 250 (702)
|..+ .++++.+.+|...|.+++|-|.+.+|++++.|.+|+.|++.++-++.++..| ...|..++.+.| |.++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h------~ewvr~v~v~~D-Gti~ 250 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH------SEWVRMVRVNQD-GTII 250 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc------hHhEEEEEecCC-eeEE
Confidence 9987 5677888899999999999999999999999999999999999999999999 689999999999 9999
Q ss_pred EEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeecc-----------CCCCCeEE-EeCCCEEEEEeCCCCceeE
Q 005325 251 GVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSI-----------NTERPKLI-TTDNHIVRIWDPETGESMT 317 (702)
Q Consensus 251 asGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~-----------~~~~~ll~-ss~Dg~V~IWd~~tg~~l~ 317 (702)
|+++.|.+|++|-+.+..+.. +..| ..+|.+++|-|-. .+++.++. ++.|++|++||+.+|.++.
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~h--Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREH--EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhcc--ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 999999999999999987655 6777 5699999998843 12334554 4579999999999999999
Q ss_pred EecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 318 SIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 318 ~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
++.+|...|.+++|+|.|.+|+++.+|+.+++|.+..+.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 999999999999999999999999999999999987654
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=234.37 Aligned_cols=276 Identities=16% Similarity=0.220 Sum_probs=224.0
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g 136 (702)
+...++|..|. + .+ +++|+.+.+|++|+..+. .. .+.+|.+. +..+.+..-+.+|++|+.|+++++|+.. |
T Consensus 207 ~~~~~~~~q~~-~-~~-~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH-D-GF-FKSGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee-c-Ce-EEecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 45678888888 3 44 699999999999999882 22 47888665 5555565566899999999999999977 4
Q ss_pred ceEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
.+..+ +..+...+.+...... ++.++.|.+|++|++.++.++..+.+|..+|+|+.++ +.++++|+.|++|.+||+
T Consensus 282 ~C~~~-l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 282 ECTHS-LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred cEEEE-ecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 44433 3333333333333333 5556789999999999999999999999999999998 789999999999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-eEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-YPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~-~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
.+++++.++..| ...|+++.+.+. ..+++|+.|++|++||+++. +++. +..| ..-|..+.+. +
T Consensus 359 ~~~~cl~sl~gH------~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~~~-----~ 423 (537)
T KOG0274|consen 359 RTGKCLKSLSGH------TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLLLR-----D 423 (537)
T ss_pred hhceeeeeecCC------cceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccccc-----c
Confidence 999999999998 799999988742 79999999999999999999 7777 5555 5677777775 5
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCc
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~W 361 (702)
..++.++.|++|++||..+++++..++. |...|..+++. ...+++++.++.+.+|.+++....-.+
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 6677777899999999999999999999 66888888776 567999999999999999886554433
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-24 Score=207.29 Aligned_cols=287 Identities=16% Similarity=0.167 Sum_probs=238.1
Q ss_pred cCCCceeEEEEC---CCCCEEEEEEecCCcEEEEEc--CCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005325 60 WFETATTKIRET---PDGEFLIVSGIYPPQVKVYEL--RQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 60 ~~~~~v~~i~~S---pDG~~llatGs~dg~I~vwdl--~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~ 134 (702)
.|..+|-.++|| |+|-+ |++++.|+.-.+-+- ....-+|++|... +-.+.+..+-...++++.|-+-++|+.
T Consensus 12 ghtrpvvdl~~s~itp~g~f-lisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYF-LISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred CCCcceeEEeccCCCCCceE-EEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCchhhhhhhhcccchhhhhhh
Confidence 467778888887 57766 888888876554443 3366689999766 666778878778899999999999987
Q ss_pred C-C-ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 135 Y-G-KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 135 ~-g-~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
- | ....+...+..+.++|...+..|++++...-+++||++... ....+.+|.+.|..+-|....+.|++.+.|++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 6 3 34444445556689999999999999999999999998654 4566889999999999998888999989999999
Q ss_pred EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccC
Q 005325 212 CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSIN 291 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~ 291 (702)
+||.+++..+++|... .+|+++.++++ |.+|.+ ...+.|.+||..+..++..... ...|.+...+|
T Consensus 169 LWD~rTgt~v~sL~~~-------s~VtSlEvs~d-G~ilTi-a~gssV~Fwdaksf~~lKs~k~--P~nV~SASL~P--- 234 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFN-------SPVTSLEVSQD-GRILTI-AYGSSVKFWDAKSFGLLKSYKM--PCNVESASLHP--- 234 (334)
T ss_pred EEEeccCcEEEEEecC-------CCCcceeeccC-CCEEEE-ecCceeEEeccccccceeeccC--ccccccccccC---
Confidence 9999999999999988 89999999999 877766 5567899999999888876555 45789999999
Q ss_pred CCCCeEEEeCCCEEEEEeCCCCceeEEe-cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccC
Q 005325 292 TERPKLITTDNHIVRIWDPETGESMTSI-EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCS 363 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~tg~~l~~i-~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcs 363 (702)
+.+.+++++.|..++.||..+|..+... .+|.++|.||.|+|++.+.+++++||.|++|....-.+...|..
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~ 307 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKC 307 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhccc
Confidence 4566777778999999999999988885 89999999999999999999999999999998876555446644
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=207.28 Aligned_cols=251 Identities=16% Similarity=0.210 Sum_probs=205.7
Q ss_pred ccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc---eEEEeeecCCceEEEEEEcCCCCEEEEEECC
Q 005325 50 QRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL---SLKFERHLDSEIINFEVLADDYSKLAFLCAD 126 (702)
Q Consensus 50 ~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~---~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D 126 (702)
...|...+.|+.......++||+....++++++.||++++||+... ...+..| ..+|.++-+-..+...+++++.|
T Consensus 48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhh-hhheEEeccccccceeEEeeccC
Confidence 4567788899999999999999998888999999999999997652 2355566 56677777666666667777778
Q ss_pred CeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEE
Q 005325 127 RSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGG 205 (702)
Q Consensus 127 ~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs 205 (702)
++|++ |+...+..+.+|.+|...|....|+|.. ++++++|
T Consensus 127 ~TiKL---------------------------------------W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 127 GTIKL---------------------------------------WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CceEe---------------------------------------ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 88777 5555566678899999999999999976 8999999
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCCCeEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDSPIVD 283 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~s 283 (702)
.||++++||++.......+..| ...|.|+.|+.-+...|++|+.|+.|++||+|+-+ |+. +.+| +..|..
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AVRk 239 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAH------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAVRK 239 (311)
T ss_pred CCceEEEEEecCCCceeEEEec------cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEEEE
Confidence 9999999999965444457777 68999999998768899999999999999999854 665 6677 789999
Q ss_pred EEEeeccCCCCCeEEEe-CCCEEEEEeCCCC-ceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEE
Q 005325 284 IKWHQSINTERPKLITT-DNHIVRIWDPETG-ESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg-~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ 351 (702)
|.|+| ....+|+++ -|=+++|||...+ ..+.+...|+.-|..+.|++ +.+.++.++-|..+.+|.
T Consensus 240 vk~Sp---h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 240 VKFSP---HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EecCc---chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999 344455555 6999999999854 45566777888899999998 677999999999999985
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=218.75 Aligned_cols=274 Identities=15% Similarity=0.208 Sum_probs=216.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|.|++=+|..--.+|+|+.||.|+|||+.+ ....|..| .+. +.-+.+.. ..+++++.|++|+.|...+.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-~G~-V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-EGL-VRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-cCc-eeeEEecc--cceEEecCCcceeeeeccCC
Confidence 47788999999998845589999999999999998 34467777 333 44444544 77899999999999998874
Q ss_pred eEEEecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEC
Q 005325 138 HYSLRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDM 215 (702)
Q Consensus 138 ~~~~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~ 215 (702)
...+-...... .+..+..+... ++.+-.|.+||.....++..+....+.|.|+.|+|.. .+|++|..|+.|.|||+
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~F--aTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVF--ATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred cceeeeccccccccccccccccc--cccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 33322222211 22222222222 3334468899999999999999999999999999987 78888889999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
|+.+++..+... ..-+.|+|+|. +..|++|+.|..++.||+|. ..|+. ..+| .+.|.++.|+| .+
T Consensus 218 R~~~Pl~KVi~~-------mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsp---tG 284 (433)
T KOG0268|consen 218 RQASPLKKVILT-------MRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSP---TG 284 (433)
T ss_pred ccCCccceeeee-------ccccceecCcc-ccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCC---Cc
Confidence 999999888776 56789999997 99999999999999999997 44666 6788 78999999999 67
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
..+++++-|.+|+||.++.+..--.... --..|.+|.|+.|+.++++|++++.|.+|-.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7888888999999999987643222211 1357999999999999999999999999964
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=5.2e-25 Score=220.33 Aligned_cols=257 Identities=16% Similarity=0.256 Sum_probs=198.1
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
++....+|+|+||+.++- . -.+. -..|.++|.|+.|.. + ++++|+.|.+|+|
T Consensus 210 iVSGlrDnTikiWD~n~~-~---------c~~~---------------L~GHtGSVLCLqyd~--r-viisGSSDsTvrv 261 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSL-E---------CLKI---------------LTGHTGSVLCLQYDE--R-VIVSGSSDSTVRV 261 (499)
T ss_pred hhcccccCceEEeccccH-H---------HHHh---------------hhcCCCcEEeeeccc--e-EEEecCCCceEEE
Confidence 577788999999998774 0 0111 136889999999854 3 5999999999999
Q ss_pred EEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE--EecCCCcc-ceEEecCCC-cEEEEe
Q 005325 90 YELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS--LRIPRMGR-DMAYNSWSC-DLLCAA 163 (702)
Q Consensus 90 wdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~~~~~-~l~~~~~s~-~llv~s 163 (702)
||+++..+ .+..|.+. +--+.++. .++++++.|++|.+|+....... .++...++ ++....+.. .+++++
T Consensus 262 WDv~tge~l~tlihHcea--VLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsAS 337 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEA--VLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 337 (499)
T ss_pred EeccCCchhhHHhhhcce--eEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEec
Confidence 99999443 34445333 44445554 78999999999999998743211 11222222 333333333 467788
Q ss_pred cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc
Q 005325 164 SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 164 ~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.|.+|.+|++.++.+++++.+|...|.|+.+. +.++++|+.|.+|++||+..|.++..+.+| ..-|.||.|+
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGH------EeLvRciRFd 409 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH------EELVRCIRFD 409 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhch------HHhhhheeec
Confidence 88899999999999999999999999999875 789999999999999999999999999998 7899999997
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCe-E--------EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 244 SNGGFLMGVGSSTGKVLIYDLRSSY-P--------IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 244 pd~g~~LasGs~DG~V~lwDlrs~~-~--------l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
...|++|..||+|+|||+..+. | +. ...| .+.|..+.|. .-.+++++-|.+|-|||..++
T Consensus 410 ---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQFD-----~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 410 ---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQFD-----EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ---CceeeeccccceEEEEecccccCCcccccchHHHhhhhc--cceeEEEeec-----ceEEEeccCCCeEEEEEcCCC
Confidence 5689999999999999998643 1 11 3444 6789999996 456777778999999999877
Q ss_pred cee
Q 005325 314 ESM 316 (702)
Q Consensus 314 ~~l 316 (702)
.+-
T Consensus 480 ~~~ 482 (499)
T KOG0281|consen 480 PPS 482 (499)
T ss_pred Ccc
Confidence 554
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=9.5e-23 Score=221.58 Aligned_cols=312 Identities=13% Similarity=0.099 Sum_probs=245.1
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
.|...++|+|..|.+....++.|+-. ++.-|.-..|...|.+++||.|... +++|+ .+.|+|
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~----------------~~~~i~~~GHR~dVRsl~vS~d~~~-~~Sga-~~Siki 398 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEAD----------------RTSNIEIGGHRSDVRSLCVSSDSIL-LASGA-GESIKI 398 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCcccc----------------ccceeeeccchhheeEEEeecCcee-eeecC-CCcEEE
Confidence 66668899999999987313333221 2222344467788999999998876 66654 578999
Q ss_pred EEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC--C-CccceEEecCCCcEEEEecCC
Q 005325 90 YELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP--R-MGRDMAYNSWSCDLLCAASSP 166 (702)
Q Consensus 90 wdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~--~-~~~~l~~~~~s~~llv~s~d~ 166 (702)
|+..++...-.-..+ .+-+..|-|...++++|...|.+.+++.......-.++ . ...++...|.+..+++++.|.
T Consensus 399 Wn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 999985543332222 34444555666999999999999999988432222222 2 222888888999999999999
Q ss_pred CEEEEECCC-----CeEEEEeec-------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCC
Q 005325 167 ELYRINLEQ-----GRFLSSLNT-------QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDAD 234 (702)
Q Consensus 167 ~V~vwdl~~-----g~~~~~l~~-------h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~ 234 (702)
+|.+||..- |...+.+.. -...|.|+.++|++.+||++--|.+|++|-+.+-+..-++-+| .
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH------k 550 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH------K 550 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc------c
Confidence 999998631 211111221 1357999999999999999999999999999998887777777 7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
-||.||..+|| +..++||+.|..|+||-+.-|.+-. +..| ...|+++.|.| ....++++|-|+.|+-||-..-
T Consensus 551 LPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS~fAH--dDSvm~V~F~P---~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 551 LPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKSFFAH--DDSVMSVQFLP---KTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred cceeEEeccCC-cCeEEeccCCCceEEeccccchhhhhhhcc--cCceeEEEEcc---cceeEEEecCcceEEeechhhh
Confidence 99999999999 9999999999999999999998876 7788 68999999998 3445556668999999999999
Q ss_pred ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 314 ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 314 ~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+.+..+.+|...|++++.+|+|+++++++.|..|.+|.-.
T Consensus 625 e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999999999999999999999999999999999999644
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=7.2e-23 Score=199.29 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=223.7
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g 136 (702)
.|+.+++.|+++.+|.. |.+++.|..+.||-..+. .-.+.+|..+ +.++.++.+..+|++++.|.++++|++. |
T Consensus 8 GHERplTqiKyN~eGDL-lFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDL-LFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cCccccceEEecCCCcE-EEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47889999999999999 889999999999987552 2378899777 7777788888999999999999999998 5
Q ss_pred c-eEEEecCCCccceEEecCCCcEEEEec-----CCCEEEEECC-------CCeEEEEeecCCCCeEEEEEcCCCCEEEE
Q 005325 137 K-HYSLRIPRMGRDMAYNSWSCDLLCAAS-----SPELYRINLE-------QGRFLSSLNTQSPALNVVSRSKLHGLIAC 203 (702)
Q Consensus 137 ~-~~~~~i~~~~~~l~~~~~s~~llv~s~-----d~~V~vwdl~-------~g~~~~~l~~h~~~V~~l~~sp~~~llas 203 (702)
. ......+...+.+.|......++++.. .+.|.++|++ ...++..+..+.+.++.+-|.|.+.+|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 4 344556666667777666555444433 2458889887 44556777888899999999999999999
Q ss_pred EEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeE
Q 005325 204 GGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIV 282 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~ 282 (702)
|..||.|.+||++++. .+.+...| ...|+.|+++|+ ..++++|+.|.+-++||.++-..+..... ..||+
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h------~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN 235 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEH------SSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVN 235 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhh------ccccccccccCC-cceEEecccCccceeeeccceeeEEEeee--ccccc
Confidence 9999999999999974 55555666 689999999999 99999999999999999999888776555 67999
Q ss_pred EEEEeeccCCCCCeEEEeC--CCEEEEEeCCCC------------ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEE
Q 005325 283 DIKWHQSINTERPKLITTD--NHIVRIWDPETG------------ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~tg------------~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
+.+++| ...++++++. -..|.-=+.+.| +.+..+.+|-++||+|+|+|++...+++++||.|+
T Consensus 236 ~aaisP---~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 236 TAAISP---LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred ceeccc---ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 999999 3455666553 222322222233 34567889999999999999999999999999999
Q ss_pred EEEcC
Q 005325 349 SYFIP 353 (702)
Q Consensus 349 ~~~ip 353 (702)
++...
T Consensus 313 ~h~Fd 317 (327)
T KOG0643|consen 313 LHHFD 317 (327)
T ss_pred EEEec
Confidence 98654
No 62
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=9e-24 Score=220.02 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=237.0
Q ss_pred cccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-----EEeeecCCceEEEEEEcCCCCEEEEE
Q 005325 49 YQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-----KFERHLDSEIINFEVLADDYSKLAFL 123 (702)
Q Consensus 49 ~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-----~~~~h~~~~vv~~~~ls~dg~~Las~ 123 (702)
+-+..+.|..+.|-+.|..+++|...++ +.||+ .|.|+|||+....- .+........+..|-+.+||+.|+++
T Consensus 406 IPrharq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 406 IPRHARQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred CCchHHhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec
Confidence 3445556778889999999999999999 78876 68999999987211 11111122236677789999999999
Q ss_pred ECCCeEEEEecCCceE--EEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC
Q 005325 124 CADRSISLHAKYGKHY--SLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 124 s~D~~I~iw~~~g~~~--~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
+.-.++.|||+..... ...++. .+..++..+...-.+++.++|.|.+||+.....++.|++|.+.+.||.++++|
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 9999999999884332 233333 33466777777778999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCC
Q 005325 199 GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFD 278 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~ 278 (702)
..|.+|+-|.+|++||++.+..+...... +.|.+|.++|+ +.+|++|-.++.|-|..........+.-| .
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~-------SQIfSLg~cP~-~dWlavGMens~vevlh~skp~kyqlhlh--e 633 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFS-------SQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPEKYQLHLH--E 633 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhh-------hhheecccCCC-ccceeeecccCcEEEEecCCccceeeccc--c
Confidence 99999999999999999999887776665 88999999999 99999999999988877766555555445 7
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
+-|.++.|.+ .+..++.++.|+.+..|.+--|..+....- .+.|.++.++.+..+|++++.+.+..+|.|
T Consensus 634 ScVLSlKFa~---cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 SCVLSLKFAY---CGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cEEEEEEecc---cCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8999999997 455566667899999999998988887777 889999999999999999999998888865
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=5.5e-23 Score=208.70 Aligned_cols=263 Identities=15% Similarity=0.238 Sum_probs=203.4
Q ss_pred CcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEE-CCCC-CEEEEEEecC
Q 005325 7 EGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRE-TPDG-EFLIVSGIYP 84 (702)
Q Consensus 7 ~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~-SpDG-~~llatGs~d 84 (702)
...+|+.+.++.++||++.+- ...+--.|.+++.++++ .++. ...+++++.|
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk--------------------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGK--------------------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred CceEEEeecCCeeEEEecCCc--------------------------eEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 345899999999999999876 22333456777775554 3332 2347999999
Q ss_pred CcEEEEEcCCce------EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC----ceE---------------
Q 005325 85 PQVKVYELRQLS------LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG----KHY--------------- 139 (702)
Q Consensus 85 g~I~vwdl~~~~------~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g----~~~--------------- 139 (702)
.++++|.++... ....+|... |..+...+++..+++++.|.+|.||+... ...
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccc--eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999887622 133467555 77787888999999999999999998221 000
Q ss_pred -EEecC-----CCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 140 -SLRIP-----RMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 140 -~~~i~-----~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
..+.| .+.. ++.|.+ ...+++++-|.+|.+||++++..+..+.+.. .++|++.+|...+|++|+.|..|
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCce
Confidence 01111 1111 444544 5568999999999999999999998887665 69999999999999999999999
Q ss_pred EEEECCCCc---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCCCeEEEE
Q 005325 211 ECFDMRMRS---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDSPIVDIK 285 (702)
Q Consensus 211 ~iWD~~t~~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~ 285 (702)
++||+|++. ..++|..| ...|.++.|+|.+..+|++|+.|+++++||+|+.+ |+. +..| ...|.++.
T Consensus 325 rl~DPR~~~gs~v~~s~~gH------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h--~DKvl~vd 396 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGH------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH--NDKVLSVD 396 (423)
T ss_pred eecCCCCCCCceeEEeeecc------hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC--CceEEEEe
Confidence 999999864 34555555 78999999999878889999999999999999987 777 6777 78999999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
|+. +..+++++.|++|+|+...
T Consensus 397 W~~----~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 397 WNE----GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccC----CceEEeccCcceEEEeccc
Confidence 983 6677777789999998643
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.6e-22 Score=221.01 Aligned_cols=285 Identities=14% Similarity=0.148 Sum_probs=217.0
Q ss_pred eeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 55 LIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 55 liqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
||..| +|.++|..|+|+|++.+ +++|+.|-.|+||+..+.. .++.+|.+. +..++|++.+-+|++++.|.+|+|
T Consensus 43 li~rFdeHdGpVRgv~FH~~qpl-FVSGGDDykIkVWnYk~rrclftL~GHlDY--VRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPL-FVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--VRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCe-EEecCCccEEEEEecccceehhhhccccce--eEEeeccCCCceEEEccCCCeEEE
Confidence 45666 59999999999999998 9999999999999999844 467788888 899999999999999999999999
Q ss_pred EecCC-ceEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECCCCe-----------------------------EE
Q 005325 132 HAKYG-KHYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLEQGR-----------------------------FL 179 (702)
Q Consensus 132 w~~~g-~~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~~g~-----------------------------~~ 179 (702)
|+... .+..+-..+.+. |..|+|....+++++-|-+|++||+..-+ ..
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 99884 333332333333 66666666668888999999999974211 11
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 005325 180 SSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG 257 (702)
..+.+|...||-++|+|.-.+|++|++|..|++|.+...+ .+-+...| ...|+|+-|+|. ..++++.+.|+
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH------~nnVssvlfhp~-q~lIlSnsEDk 272 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH------YNNVSSVLFHPH-QDLILSNSEDK 272 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc------cCCcceEEecCc-cceeEecCCCc
Confidence 3467899999999999999999999999999999987544 23344444 799999999998 88999999999
Q ss_pred eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC--------------------------
Q 005325 258 KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE-------------------------- 311 (702)
Q Consensus 258 ~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~-------------------------- 311 (702)
+|+|||+...+++..+.+. ....+.|+-|| ...+++++-|+-+.||.+.
T Consensus 273 sirVwDm~kRt~v~tfrre-ndRFW~laahP----~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~ 347 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRRE-NDRFWILAAHP----ELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDL 347 (1202)
T ss_pred cEEEEecccccceeeeecc-CCeEEEEEecC----CcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeec
Confidence 9999999998888866443 36789999998 5566666655555565554
Q ss_pred -CCc--eeEEecCC---CCceeEEEEEcCCCEEEEEe--CCCcEEEEEcCC
Q 005325 312 -TGE--SMTSIEPT---AGKINDVCVFKDSGLLLLAL--DCSQIPSYFIPD 354 (702)
Q Consensus 312 -tg~--~l~~i~~h---~~~I~~v~~~p~~~~l~~a~--~d~~I~~~~ip~ 354 (702)
+.+ .+..+... ..++.++.++|..+.+++++ +.+..-.|.+|.
T Consensus 348 ~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 348 RTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred cccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 211 11222221 24778899999777666553 455666677765
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.2e-22 Score=230.08 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=226.2
Q ss_pred CCceeEEEECCCCCEEEEEEe--cCCcEEEEEcCC--------------ceEEEeeecCCceEEEEEEcCCCCEEEEEEC
Q 005325 62 ETATTKIRETPDGEFLIVSGI--YPPQVKVYELRQ--------------LSLKFERHLDSEIINFEVLADDYSKLAFLCA 125 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs--~dg~I~vwdl~~--------------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~ 125 (702)
...|.+|.++|||.. +|||+ .|+.++||+... .......|..+ +.++.|++||.+||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~s--v~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGS--VNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CeeEEEEEecCCcee-EecCCccccccceeeccccccchhhhhhcccchhheeeccccCc--eeEEEECCCCCeEeeccC
Confidence 345889999999999 99999 999999998765 11234456555 888999999999999999
Q ss_pred CCeEEEEecCC--------c------------eEEEec-CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec
Q 005325 126 DRSISLHAKYG--------K------------HYSLRI-PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT 184 (702)
Q Consensus 126 D~~I~iw~~~g--------~------------~~~~~i-~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~ 184 (702)
|+.|.||.... . ...++- +....++.|.|...-+++++.|+.|.+||..+...+..+.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999996551 0 111111 11223667777666689999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC----CCeEE
Q 005325 185 QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS----TGKVL 260 (702)
Q Consensus 185 h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~----DG~V~ 260 (702)
|.+.|-.+.|.|-|++||+-+.|++|+||.+.+....+.+..+........-+..+.|||| |.+|++... -.++.
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD-G~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD-GHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC-cCeecchhhccCCcceeE
Confidence 9999999999999999999999999999998887788888776433333567889999999 999998643 34678
Q ss_pred EEEcCCCeE-EEEeeccCCCCeEEEEEeecc-----C------C-CCC-eEEE-eCCCEEEEEeCCCCceeEEec-CCCC
Q 005325 261 IYDLRSSYP-IRVKDHMFDSPIVDIKWHQSI-----N------T-ERP-KLIT-TDNHIVRIWDPETGESMTSIE-PTAG 324 (702)
Q Consensus 261 lwDlrs~~~-l~~~~h~~~~~I~sl~fsp~~-----~------~-~~~-ll~s-s~Dg~V~IWd~~tg~~l~~i~-~h~~ 324 (702)
|.+-.+.+. ..+.+| ..|+.++.|+|.. . . ..+ ++++ +.|++|.||.....+++..+. ....
T Consensus 249 IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887666553 337888 6799999999965 1 0 111 3443 369999999998888876653 2356
Q ss_pred ceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 325 KINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 325 ~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.|.+++|+|++-.|++|+.||.|.++.+..
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 999999999999999999999999876543
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-21 Score=192.87 Aligned_cols=287 Identities=12% Similarity=0.157 Sum_probs=215.9
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEEC--CCeEEEEecCCc
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCA--DRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~--D~~I~iw~~~g~ 137 (702)
+.+.+++|.|+++|.+ |++++.|.+|+|||..+... +...+....+-..++.+++ ..++.++. |.+|+.-++..+
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEEEeecC
Confidence 5688999999999999 77788999999999988433 2222222223344444444 55655655 889999888866
Q ss_pred eEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 138 HYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 138 ~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
.+.--++++.. .+...|....+++++.|.+|++||+...++...+... .-..++|.|.|-++|++.....|++||
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEE
Confidence 65544555544 6677777766899999999999999987776655443 344688999999999999888999999
Q ss_pred CCCC--cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCe-EEEEEeecc
Q 005325 215 MRMR--SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPI-VDIKWHQSI 290 (702)
Q Consensus 215 ~~t~--~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I-~sl~fsp~~ 290 (702)
+|+- .+..++.... +.....+.|.|||+ |.+|+.++..+.+++.|.-.|..+. +..+.....+ .+.+|+|
T Consensus 169 ~Rs~dkgPF~tf~i~~---~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-- 242 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITD---NDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-- 242 (311)
T ss_pred ecccCCCCceeEccCC---CCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC--
Confidence 9964 4555555441 22478999999999 9999999999999999999988766 4444333222 5778888
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCc
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~W 361 (702)
++..++.+++||+|.||++.+|..+..+.+ +.+++.++.|.|.-.++++++. ..++++|.....|.|
T Consensus 243 -ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s---~l~fw~p~~~~~~~~ 310 (311)
T KOG1446|consen 243 -DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS---NLVFWLPDEDALPAH 310 (311)
T ss_pred -CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc---eEEEEeccccccCCC
Confidence 445555555799999999999999999887 6889999999998887777654 367778887665555
No 67
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1.5e-21 Score=218.24 Aligned_cols=260 Identities=11% Similarity=0.036 Sum_probs=186.0
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCc---------------eEEEeeecCCceEEEEEEcC-CCCEEEEEECCCe
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQL---------------SLKFERHLDSEIINFEVLAD-DYSKLAFLCADRS 128 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~---------------~~~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~ 128 (702)
++...+++|+.. +++++.+.....|+.... ...+.+|... +..+.++| ++..|++++.|++
T Consensus 23 i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~--V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 23 VTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGP--IIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred cccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCC--EEEEEEcCCCCCEEEEEeCCCE
Confidence 345556667555 455555555556654331 1135566433 55555666 8889999999999
Q ss_pred EEEEecCCce-------EEEecCCC---ccceEEecCCC-cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC
Q 005325 129 ISLHAKYGKH-------YSLRIPRM---GRDMAYNSWSC-DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL 197 (702)
Q Consensus 129 I~iw~~~g~~-------~~~~i~~~---~~~l~~~~~s~-~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~ 197 (702)
|++|++.... ....+..+ ..++.|++... .|++++.|+.|.+||+.+++.+..+..|...|++|+|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 9999986311 11112222 23677887654 4778888999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe----CCCeEEEEEcCCCe-EEEE
Q 005325 198 HGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS----STGKVLIYDLRSSY-PIRV 272 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs----~DG~V~lwDlrs~~-~l~~ 272 (702)
+.+|++|+.|++|+|||+++++.+..+..|. ...+..+.|.++ +..|++++ .|+.|+|||+++.. ++..
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-----~~~~~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-----SAKSQRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCC-----CCcceEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9999999999999999999999888888772 223457789988 66665543 47999999999754 5544
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCC
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSG 336 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~ 336 (702)
........+....|+| ++..+++++ .|+.|++||+.+++++..... +..++..+||.|.-.
T Consensus 254 ~~~d~~~~~~~~~~d~---d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 254 VDLDQSSALFIPFFDE---DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eccCCCCceEEEEEcC---CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 3322234566667776 344555555 599999999999988776644 345788899998543
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=210.34 Aligned_cols=275 Identities=14% Similarity=0.143 Sum_probs=214.6
Q ss_pred cccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 58 DLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 58 d~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
...-+.+|++++|||...|=+|+.+ .-.+.||+..+... ++.+-.+. +..+.|-.||..|+.|...|.|+|++..
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~--v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDV--VYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccc--eeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3345688999999998776555543 45789999887332 24443233 6667777899999999999999999954
Q ss_pred C--ceEEEecCCC-ccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeE
Q 005325 136 G--KHYSLRIPRM-GRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAV 210 (702)
Q Consensus 136 g--~~~~~~i~~~-~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V 210 (702)
. ....+..+.. ...+.|++....+++.++| ..+.+||+.+......+.+|++.|.|.+|+|.. .+++||+.||+|
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 3 1111111222 2255666666665555554 557889999988766899999999999999976 699999999999
Q ss_pred EEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEEEe
Q 005325 211 ECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIKWH 287 (702)
Q Consensus 211 ~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~fs 287 (702)
++||+++. ..+..+++. .+|.++.|-|. |..||+++. ..|+|||+-+|..+. ...| ...|+|+++.
T Consensus 179 rl~DtR~~~~~v~elnhg-------~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~~~~H--~KtVTcL~l~ 247 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHG-------CPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTSMFNH--NKTVTCLRLA 247 (487)
T ss_pred EEEEeccCCceeEEecCC-------CceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhhhhcc--cceEEEEEee
Confidence 99999987 667777655 89999999999 889888654 579999999765444 3446 6899999998
Q ss_pred eccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 288 QSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 288 p~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
. ++..|++++-|+.|+|||+.+.+.+.++.. +++|.+++.+|++..+++|..+|-+.+-
T Consensus 248 s---~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 248 S---DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred c---CCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeee
Confidence 4 567788888899999999999999999998 9999999999999999999999877654
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=209.26 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=212.4
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce---E---------------EEe--eecCCceEEEEEEcCCCCE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS---L---------------KFE--RHLDSEIINFEVLADDYSK 119 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~---~---------------~~~--~h~~~~vv~~~~ls~dg~~ 119 (702)
.|..+++|++++||+++ +.+++.+++|.=|++.+.. . +.. .|.. .+-.+++|+|+.+
T Consensus 140 ~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k--eil~~avS~Dgky 216 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK--EILTLAVSSDGKY 216 (479)
T ss_pred cccCcceEEEeeccccc-eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc--eeEEEEEcCCCcE
Confidence 47788999999999999 8999999999999987611 1 111 2322 2556668999999
Q ss_pred EEEEECCCeEEEEecCC-ceEEE-ecCC-CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC
Q 005325 120 LAFLCADRSISLHAKYG-KHYSL-RIPR-MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK 196 (702)
Q Consensus 120 Las~s~D~~I~iw~~~g-~~~~~-~i~~-~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp 196 (702)
||+++.|+.|.||+... .+... ..+. ...+++|-.....+|+++.|..|.+|+++...++.++-+|.+.|..|....
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 99999999999999884 33222 1111 222777878888899999999999999999999999999999999999888
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--e
Q 005325 197 LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK--D 274 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~--~ 274 (702)
....+.+|+.|.++++|++..- .--.+..+ .+.+-|++|-.+ ..|++|+.+|.|.||++-..+|+.+. .
T Consensus 297 reR~vtVGgrDrT~rlwKi~ee-sqlifrg~------~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPEE-SQLIFRGG------EGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred ccceEEeccccceeEEEecccc-ceeeeeCC------CCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeecc
Confidence 8888888999999999999533 23344444 579999999855 89999999999999999999998743 3
Q ss_pred cc---------CCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCC----ceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 275 HM---------FDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETG----ESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 275 h~---------~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg----~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
|+ ....|++|+..| +..+++++ .+|+|++|-+..| .++..+.. .+.||+++|++++..|++
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~----~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIP----GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccccCCccccccccceeeeEecc----cCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEE
Confidence 32 112789999998 67777766 6999999999887 57778886 899999999999996666
Q ss_pred E
Q 005325 341 A 341 (702)
Q Consensus 341 a 341 (702)
+
T Consensus 443 g 443 (479)
T KOG0299|consen 443 G 443 (479)
T ss_pred e
Confidence 5
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.6e-22 Score=219.84 Aligned_cols=288 Identities=15% Similarity=0.192 Sum_probs=225.2
Q ss_pred eecccCCCceeEEEECCCCCEE--EEEEecCCcEEEEEcCC-----------ceEEEeeecCCceEEEEEEcCCCCEEEE
Q 005325 56 IQDLWFETATTKIRETPDGEFL--IVSGIYPPQVKVYELRQ-----------LSLKFERHLDSEIINFEVLADDYSKLAF 122 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~l--latGs~dg~I~vwdl~~-----------~~~~~~~h~~~~vv~~~~ls~dg~~Las 122 (702)
++....+..+.++.|.|++... |++ ..+..|.+|.+.. ..+.+.+| .+.|..+ .+|.+ +.++.
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GH-R~dVRsl-~vS~d-~~~~~ 389 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGH-RSDVRSL-CVSSD-SILLA 389 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccc-hhheeEE-EeecC-ceeee
Confidence 3444467788888998876532 333 6678888888765 12455666 3444444 46656 44445
Q ss_pred EECCCeEEEEecC-CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE
Q 005325 123 LCADRSISLHAKY-GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI 201 (702)
Q Consensus 123 ~s~D~~I~iw~~~-g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll 201 (702)
.+..++|.||+.. ..+..+-......+..|.|+...+++|...|++.++|+.+...+.++..|.+.|++++.+|++..+
T Consensus 390 Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 390 SGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred ecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 5567789999998 444444334444588899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CcceeEEeccc-CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eee
Q 005325 202 ACGGEDGAVECFDMRM-----RSSAARINAVA-PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKD 274 (702)
Q Consensus 202 asgs~DG~V~iWD~~t-----~~~v~~l~~~~-~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~ 274 (702)
++||.|.+|++||..- +..-..+..+. ....-...|.|+.+||| |.+||++--|.+|+||-+.+-+... +++
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFflsLYG 548 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFFLSLYG 548 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceeeeeeecc
Confidence 9999999999999751 11111122220 01112378999999999 9999999999999999999987654 889
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
| ..||.|+..+| ++..+++++.|++|+||-++-|.+-.++.+|...|.+|.|.|...++++|+.|+.|..|.-.
T Consensus 549 H--kLPV~smDIS~---DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 549 H--KLPVLSMDISP---DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred c--ccceeEEeccC---CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 9 79999999998 34444455579999999999999999999999999999999999999999999999999543
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=193.92 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=210.1
Q ss_pred CCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEec
Q 005325 5 GGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIY 83 (702)
Q Consensus 5 dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~ 83 (702)
||.. .|++.++-+|++||.-.| -||..+ .|-..|..++.+.|... +++|+.
T Consensus 28 dGnY-~ltcGsdrtvrLWNp~rg--------------------------~liktYsghG~EVlD~~~s~Dnsk-f~s~Gg 79 (307)
T KOG0316|consen 28 DGNY-CLTCGSDRTVRLWNPLRG--------------------------ALIKTYSGHGHEVLDAALSSDNSK-FASCGG 79 (307)
T ss_pred CCCE-EEEcCCCceEEeeccccc--------------------------ceeeeecCCCceeeeccccccccc-cccCCC
Confidence 4443 577777788888888777 344444 35667888899999988 899999
Q ss_pred CCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEE
Q 005325 84 PPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLC 161 (702)
Q Consensus 84 dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv 161 (702)
|..|.+||+.+.. .+|.+|... +..+.|..+.+.+++++.|.++++|+-...
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNeesSVv~SgsfD~s~r~wDCRS~------------------------ 133 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQ--VNTVRFNEESSVVASGSFDSSVRLWDCRSR------------------------ 133 (307)
T ss_pred CceEEEEEcccCeeeeecccccce--eeEEEecCcceEEEeccccceeEEEEcccC------------------------
Confidence 9999999999944 478888555 666778888899999999999999875421
Q ss_pred EecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEE
Q 005325 162 AASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALE 241 (702)
Q Consensus 162 ~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtsla 241 (702)
..++++.+......|.+|.++ ...|++|+.||+++.||+|.++.....-. .+|+|++
T Consensus 134 -------------s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--------~pit~vs 190 (307)
T KOG0316|consen 134 -------------SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--------HPITSVS 190 (307)
T ss_pred -------------CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--------CcceeEE
Confidence 223455555666789898886 45899999999999999998876554443 5899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 242 FDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 242 fspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
|+++ ++..++++.|++|++.|-.+++.+. .++|.+...-...+++. .+..++.++.||.|.+||+..+..+..++
T Consensus 191 ~s~d-~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 191 FSKD-GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred ecCC-CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc---cceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999 9999999999999999999999887 78887655556677774 45666677789999999999999999999
Q ss_pred CCCCc-eeEEEEEcCCCEEEEEeCCCcEE
Q 005325 321 PTAGK-INDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 321 ~h~~~-I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
.|... |.++.++|.-.-+++|...+...
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~~~~~~~ 295 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITATGHGDLF 295 (307)
T ss_pred cCCceeEEeeecccCccceeEecCCceec
Confidence 88776 89999999888888887765443
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=207.79 Aligned_cols=274 Identities=15% Similarity=0.188 Sum_probs=207.8
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llat 80 (702)
.|++|.. +-+++.+.++-||.+... .+++|...+ .|..+|..|.||||.+| |++
T Consensus 232 FS~nGky-LAsaSkD~Taiiw~v~~d-----------------------~~~kl~~tlvgh~~~V~yi~wSPDdry-Lla 286 (519)
T KOG0293|consen 232 FSHNGKY-LASASKDSTAIIWIVVYD-----------------------VHFKLKKTLVGHSQPVSYIMWSPDDRY-LLA 286 (519)
T ss_pred EcCCCee-EeeccCCceEEEEEEecC-----------------------cceeeeeeeecccCceEEEEECCCCCe-EEe
Confidence 3667775 355667777777777665 224555555 47889999999999999 566
Q ss_pred EecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE----EEecCCCccceEEec
Q 005325 81 GIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY----SLRIPRMGRDMAYNS 154 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~----~~~i~~~~~~l~~~~ 154 (702)
++.+..+.+||+.+... .+...+... +..+++-|||..+++|+.|++|..|+..|... -++.|+ ..+++..+
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S-~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~-v~dlait~ 364 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFS-VSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPK-VHDLAITY 364 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCC-cceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccce-eEEEEEcC
Confidence 66777899999998332 332222233 45555667999999999999999999986432 233321 23777777
Q ss_pred CCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCC
Q 005325 155 WSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDAD 234 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~ 234 (702)
.+..+++.+.+..|.+++.++......+..| .+|++++++.++.++++--.+..|.+||+.....+..+.+|. ..
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk----q~ 439 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK----QG 439 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc----cc
Confidence 8888999999999999999887665544444 479999999999999999999999999999888888888772 13
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
.-|-.-||--.+..++|+|+.|+.|+||+..+++++. +.+| ...|++++|+| .+-..++.+++||+|+||-..
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP--~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNP--ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCC--CCHHHhhccCCCCeEEEecCC
Confidence 4455556654435789999999999999999999988 6888 68999999999 334444555689999999875
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-21 Score=194.19 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=199.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCCcc-ceEEecCCCcEEEEec--CCCEEEEECCCCeEEEEe
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRMGR-DMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSSL 182 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~~~-~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~l 182 (702)
+..+-++++|..|++++.|.+|+||+.. |... .+..++++. .+.|......++.++. +.+|+.+++.+.+.++-|
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF 96 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF 96 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc
Confidence 5666789999999999999999999987 4433 344455566 5666666666776666 778999999999999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 005325 183 NTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIY 262 (702)
Q Consensus 183 ~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lw 262 (702)
.+|...|+.|+.+|-+..+++++.|.+|++||+|+.++...+... .-..++|+|. |.++|++.....|+||
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------~~pi~AfDp~-GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------GRPIAAFDPE-GLIFALANGSELIKLY 167 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--------CCcceeECCC-CcEEEEecCCCeEEEE
Confidence 999999999999999999999999999999999999988888765 3456899999 9999999999999999
Q ss_pred EcCCC--eEEEEeec--cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCce---eEEEEEcCC
Q 005325 263 DLRSS--YPIRVKDH--MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKI---NDVCVFKDS 335 (702)
Q Consensus 263 Dlrs~--~~l~~~~h--~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I---~~v~~~p~~ 335 (702)
|+|+- .|...... ......+.|.|+| ++..+|++...+.+.+.|.-+|..+.++..+...- -+.+|.|++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~---dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSP---DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcC---CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99973 35442211 2246789999998 77788888899999999999999999887765432 467799999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCc
Q 005325 336 GLLLLALDCSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 336 ~~l~~a~~d~~I~~~~ip~lg~ap~W 361 (702)
.+++++.+|++|++|.+..--..-+|
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 99999999999999998554343333
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.3e-22 Score=204.08 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=224.4
Q ss_pred eeeeccc--C--CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eEEEeeecCCceEEEEEEcCCCC-EEEEEECC
Q 005325 54 ELIQDLW--F--ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SLKFERHLDSEIINFEVLADDYS-KLAFLCAD 126 (702)
Q Consensus 54 eliqd~~--~--~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~~~~~h~~~~vv~~~~ls~dg~-~Las~s~D 126 (702)
..++|+. + .+.|+||.|+|.-+. +.+++.|+.++||.+... ......|...-++..+.|.|+|. .+++++.-
T Consensus 201 krlkDaNa~~ps~~~I~sv~FHp~~pl-llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 201 KRLKDANAAHPSHGGITSVQFHPTAPL-LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred EeecccccCCcCcCCceEEEecCCCce-EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc
Confidence 3456654 2 367999999999988 888899999999999872 12222333444566777888888 88899999
Q ss_pred CeEEEEecC-CceEEEecCCCc-----cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCE
Q 005325 127 RSISLHAKY-GKHYSLRIPRMG-----RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGL 200 (702)
Q Consensus 127 ~~I~iw~~~-g~~~~~~i~~~~-----~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~l 200 (702)
..+..||+. .....+..+... +.+...+.+..+++++..|.|+++...++.++.+++.. +.|..++|+.++..
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKE 358 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcE
Confidence 999999987 344333333222 24445577777999999999999999999999888654 46999999999988
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC------CeEEEEee
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS------SYPIRVKD 274 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs------~~~l~~~~ 274 (702)
|++++.+|.|.+||++...++..+.... .-.-+++|.+++ |.+||+|+..|.|.|||..+ .+|+....
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G-----~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDG-----SVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecC-----ccceeeeeecCC-CceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 8888889999999999999999888761 234478888899 99999999999999999764 45665433
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEE-Ee--CCCEEEEEeCCCCceeEEecCCC---CceeEEEEEcCCCEEEEEeCCCcEE
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLI-TT--DNHIVRIWDPETGESMTSIEPTA---GKINDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~-ss--~Dg~V~IWd~~tg~~l~~i~~h~---~~I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
.. ...|++|+|+| +..+++ ++ .+..+++-.+.+...+..++... +.|+||+|+|.++++++|++++++.
T Consensus 433 NL-tt~Itsl~Fn~----d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 433 NL-TTAITSLQFNH----DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hh-heeeeeeeeCc----chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 32 56899999998 555554 44 38899999998887777776533 4789999999999999999999999
Q ss_pred EEEcC
Q 005325 349 SYFIP 353 (702)
Q Consensus 349 ~~~ip 353 (702)
+|-+.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99764
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.7e-22 Score=195.70 Aligned_cols=284 Identities=16% Similarity=0.184 Sum_probs=206.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE------EEeeecCCceEEEEEEcCCCCEEE-EEECCCeEEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL------KFERHLDSEIINFEVLADDYSKLA-FLCADRSISLH 132 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~------~~~~h~~~~vv~~~~ls~dg~~La-s~s~D~~I~iw 132 (702)
.|...|++++||.||++ |||.+.|+.|+||++..... ...-..+ --+.+.|+||..-++ ++....++++|
T Consensus 84 gH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEccCCEEEEE
Confidence 57899999999999999 99999999999999987222 1111112 145667888876664 45556788888
Q ss_pred ecC----C--ceEEEe-----cCCCcc--ceEE--ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC
Q 005325 133 AKY----G--KHYSLR-----IPRMGR--DMAY--NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL 197 (702)
Q Consensus 133 ~~~----g--~~~~~~-----i~~~~~--~l~~--~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~ 197 (702)
... | .+..+. ++.-.. .+.+ ...+..+++++.+..|.+|++. |+.+.++......-+..+++|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 432 2 222221 222222 1112 2222337888889999999998 9999998887777888999999
Q ss_pred CCEEEEEEcCCeEEEEECCC---C-----cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---
Q 005325 198 HGLIACGGEDGAVECFDMRM---R-----SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS--- 266 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t---~-----~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs--- 266 (702)
|++|++++.--.|++|.+-- | ..+..|..| ...|++++|+|+ ...+++.+.||+++|||+.-
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------~saV~~~aFsn~-S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------QSAVLAAAFSNS-STRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc------hhheeeeeeCCC-cceeEEEecCCcEEEeeccceEe
Confidence 99999999999999998742 2 234555555 899999999999 99999999999999999852
Q ss_pred --CeE--EE---EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec-CCCCceeEEEEEcCCCEE
Q 005325 267 --SYP--IR---VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE-PTAGKINDVCVFKDSGLL 338 (702)
Q Consensus 267 --~~~--l~---~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~-~h~~~I~~v~~~p~~~~l 338 (702)
..| +. ...|..+..-..|..+| .+.+++.+....|+++..++|+.+-.++ .|...|.+++|++++.++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP----~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSP----SGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCC----CCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 112 11 11222233344899998 7788888888889999999998776664 488999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCccCc
Q 005325 339 LLALDCSQIPSYFIPDLGPTPKWCSP 364 (702)
Q Consensus 339 ~~a~~d~~I~~~~ip~lg~ap~Wcsf 364 (702)
+++++.-.+. ++..|-|-+-
T Consensus 389 atcGdr~vrv------~~ntpg~~~~ 408 (420)
T KOG2096|consen 389 ATCGDRYVRV------IRNTPGWHSR 408 (420)
T ss_pred eeecceeeee------ecCCCchhhH
Confidence 9988763332 3455666543
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.6e-21 Score=197.39 Aligned_cols=239 Identities=15% Similarity=0.144 Sum_probs=181.7
Q ss_pred ecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee-cCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 57 QDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH-LDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 57 qd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h-~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
+--+|..+|+|+.||.||.| ||||..+|.|.||...+........ .-.. +.-+.++|-+..|+.++.||.|.+|.+.
T Consensus 101 eltgHKDSVt~~~Fshdgtl-LATGdmsG~v~v~~~stg~~~~~~~~e~~d-ieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTL-LATGDMSGKVLVFKVSTGGEQWKLDQEVED-IEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred EecCCCCceEEEEEccCceE-EEecCCCccEEEEEcccCceEEEeecccCc-eEEEEecccccEEEeecCCCcEEEEECC
Confidence 33468899999999999999 9999999999999999844433322 1222 3344466788999999999999999988
Q ss_pred CceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec------C---------------------
Q 005325 136 GKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT------Q--------------------- 185 (702)
Q Consensus 136 g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~------h--------------------- 185 (702)
..-+..-++.+.. +-.+.|.+..++++..+++|.+||+.+++.+..+.. +
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 5322222333222 556677777799999999999999999988776651 0
Q ss_pred ------------------------CCCeEEEEEcC---CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 186 ------------------------SPALNVVSRSK---LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 186 ------------------------~~~V~~l~~sp---~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
...+.||.+.| .-.++|+|+-||+|.|||+...+.-..+.. ..+|+
T Consensus 259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h-------e~~V~ 331 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH-------EDGVT 331 (399)
T ss_pred EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC-------CCceE
Confidence 01222333333 337899999999999999987665555544 47899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
.|.|-++ .+|++++.+|.|++||.|++..+. ..+| ..+|.+++++| +...+|++++|++.+||++.
T Consensus 332 ~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--~~~Il~f~ls~---~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 332 KLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGH--QMGILDFALSP---QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCc--chheeeccCceEEeeeccccceEEEEecC--chheeEEEEcC---CCcEEEEecCCCeEEEEecC
Confidence 9999974 799999999999999999999887 6777 67999999998 45556666789999999864
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=201.85 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=222.7
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS 140 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~ 140 (702)
..++++...|.... +.||+.|..+.|||... .-..|.+|... +..+.++++...+++++.|..|+||........
T Consensus 220 pgi~ald~~~s~~~-ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSK-ILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCc-ceecCCCCceEEEecchhhhhhhccCcceE--EEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 34677777777555 89999999999999887 33477888555 666778888889999999999999987733222
Q ss_pred -EecCC--CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC--CCeEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 141 -LRIPR--MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS--PALNVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 141 -~~i~~--~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~--~~V~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
...+. ....+..++.+..++.++.++.....|+.+|..+....... -.+++.+|+|+|.+|.+|+.||.|+|||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 22222 22366667777778888899999999999999887665432 35899999999999999999999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
.++..+..|..| .++|++|+|+.+ |.+||+++.|+.|++||+|..+.+.........+|.++.|.+ ++.+
T Consensus 377 ks~~~~a~Fpgh------t~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~---SGt~ 446 (506)
T KOG0289|consen 377 KSQTNVAKFPGH------TGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ---SGTY 446 (506)
T ss_pred CCccccccCCCC------CCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC---CCCe
Confidence 999988888888 799999999999 999999999999999999987765543333345899999997 5677
Q ss_pred eEEEeCCCEEEEEeCC--CCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 296 KLITTDNHIVRIWDPE--TGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~--tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+++++.+=.|++++-. +...+..+..|.+..+.+.|.....++++++.+..+.+|.++
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYALT 506 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeecC
Confidence 7777667666666643 466777788888899999999999999999999988887653
No 78
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=8.3e-23 Score=202.81 Aligned_cols=237 Identities=13% Similarity=0.144 Sum_probs=201.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecC-CceEE----------EecCCCccceEEecCCCcEEEEecCCCEEEEECCCC
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKY-GKHYS----------LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG 176 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~----------~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g 176 (702)
+.+..|||||++|++++-||.|.+|+.. |...+ +.......++.|...+.-+++++.||.|.+|-+++|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 5677899999999999999999999875 32211 112233446777777767999999999999999999
Q ss_pred eEEEEee-cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC
Q 005325 177 RFLSSLN-TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS 255 (702)
Q Consensus 177 ~~~~~l~-~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~ 255 (702)
.+++.|. .|+..|+|+.|+.++..+++++.|.+|++.-+.+++++..+..| .+.|+...|.++ |..++++++
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH------sSyvn~a~ft~d-G~~iisaSs 368 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH------SSYVNEATFTDD-GHHIISASS 368 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc------cccccceEEcCC-CCeEEEecC
Confidence 9999986 89999999999999999999999999999999999999999999 789999999999 999999999
Q ss_pred CCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEEEE
Q 005325 256 TGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP---TAGKINDVCV 331 (702)
Q Consensus 256 DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v~~ 331 (702)
||+|+||+..+.+++. ++......+|+++...| .+..+++++...++|.|-++. |+.+.++.. ..+..-+.+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P--Knpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP--KNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcC--CCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 9999999999999887 45555577999999998 446778888889999999886 777777754 2346666779
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|.+.++.+.++|+.++.|.+-+
T Consensus 446 SpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeec
Confidence 99999999999999999987755
No 79
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=194.46 Aligned_cols=316 Identities=13% Similarity=0.131 Sum_probs=233.9
Q ss_pred eeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 55 LIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 55 liqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
|-..++++. .+|+.||+.|.+ ||+|..+|.|.|||+.+.. ..+..|... ++.+++|+||.+|++++.|..|.+|
T Consensus 17 l~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 17 LTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIARMLSAHVRP--ITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred hceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhhhhhccccc--eeEEEecCCCCEeeeecCCceeEEE
Confidence 344555666 899999999999 9999999999999999843 355666444 7788899999999999999999999
Q ss_pred ecC--CceEEEecCCCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecC-C----CCeEEEEEcCCCCEEEEE
Q 005325 133 AKY--GKHYSLRIPRMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQ-S----PALNVVSRSKLHGLIACG 204 (702)
Q Consensus 133 ~~~--g~~~~~~i~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h-~----~~V~~l~~sp~~~llasg 204 (702)
++. ...+.++++.......|+|...+.++++- ...-++.++..+.. ..+... . ....+..|.+.|.++++|
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEe
Confidence 987 35677888888888999998888655543 33344444443221 111111 1 122344588999999999
Q ss_pred EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-------CeEE--E-Eee
Q 005325 205 GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-------SYPI--R-VKD 274 (702)
Q Consensus 205 s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-------~~~l--~-~~~ 274 (702)
+..|.+.++|..+.+++..+.... ...|.+|.|+.. |..|++-++|..|+.|+++. +.+. + +.+
T Consensus 172 tsKGkllv~~a~t~e~vas~rits-----~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITS-----VQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred cCcceEEEEecchheeeeeeeech-----heeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 999999999999999999988872 278999999998 99999999999999999872 1221 1 222
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCC-CceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTA-GKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~-~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
..+..+-.+++|+. ++.++++++ .-..++||....|.++..+.+.. ....+|.|+|-...+++. ..|.+++|..
T Consensus 246 vVNk~~Wk~ccfs~---dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSG---DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred HHhhhhhhheeecC---CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 23445567888883 566666555 47889999999999999998866 367889999988766665 8899999987
Q ss_pred CCCCCCCCccCcccccchhhhcCCccccccCccccC
Q 005325 353 PDLGPTPKWCSPIESMTEELEEGGQTTIYDNYKFLT 388 (702)
Q Consensus 353 p~lg~ap~Wcsfld~lteelee~~~~~~yd~ykfvt 388 (702)
-. .|.|..|.....|-.|.-.+....+.|....
T Consensus 322 ~~---~enwsafAPdFqeleeNieY~EkEdeFDi~D 354 (405)
T KOG1273|consen 322 VQ---VENWSAFAPDFQELEENIEYEEKEDEFDIED 354 (405)
T ss_pred ec---ccchhhcCchHHHHHhhhhhccccccCCccc
Confidence 65 5789999866543333323444445555443
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=217.37 Aligned_cols=268 Identities=13% Similarity=0.192 Sum_probs=210.2
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCc--------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEEe
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQL--------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSLR 142 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~--------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~~ 142 (702)
|.++| |.||+.||.|++|++... ...++.|.+. +.-+++..+++.|++++.|-+|++|+.. +....+.
T Consensus 35 ~~~ry-LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW--VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRY-LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW--VNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCce-EEecCCCceEEEeccccccCCcccchhhhhhhhHhH--HhhHHhhcCCCceEEecCCceEEEeecccCcchhHh
Confidence 56777 899999999999998772 2356667555 4445566678899999999999999987 3222222
Q ss_pred c----CCCccceEE-ecCCCcEEEEecCCCEEEEECCCC--eEEEE--------ee-cCCCCeEEEEEcCCCCEEEEEEc
Q 005325 143 I----PRMGRDMAY-NSWSCDLLCAASSPELYRINLEQG--RFLSS--------LN-TQSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 143 i----~~~~~~l~~-~~~s~~llv~s~d~~V~vwdl~~g--~~~~~--------l~-~h~~~V~~l~~sp~~~llasgs~ 206 (702)
. ..+..++++ .+.+..+++|+-|+.|++||+.++ +.+.+ +. ++...|.+++.++.+.+|++|+.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 2 224448888 444555788889999999999988 33322 22 57778999999999999999999
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIK 285 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~ 285 (702)
.+.|++||+++++.+..|.+| ...|.+|-.++| |..++++++||+|+||||...+++. +..| ...|+++.
T Consensus 192 ek~lr~wDprt~~kimkLrGH------TdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~VWaL~ 262 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGH------TDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGVWALQ 262 (735)
T ss_pred ccceEEeccccccceeeeecc------ccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEec--cCceEEEe
Confidence 999999999999999999988 799999999999 9999999999999999999999988 5566 56699999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+| +-..+.+++.|+.|..=|+.+....+.|--...+|..+..+....-+.+++.++.|.-|-++.
T Consensus 263 ~~~---sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 263 SSP---SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eCC---CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 997 345666777899999999988433333333377888887775444458888888888886543
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=1e-22 Score=208.58 Aligned_cols=273 Identities=12% Similarity=0.119 Sum_probs=213.4
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL----KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
|.+.|..+.|-++... |+||+.|..|++|++..... .+.+.... +..+.+.+++.++++.+.|+.+++|++..
T Consensus 174 h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~--it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELISTLAGSLGN--ITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred cccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhhhhhhccCCC--cceeeecCCCceEEeecCCCceeeeeccc
Confidence 4577899999999666 89999999999999876332 23333222 45555777789999999999999999884
Q ss_pred ceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 137 KHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 137 ~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
....-.+..+.. ++.+......++.++.+.+|..||+....+.+++-.- +.++.|+.+ ...+++|..|++|++|
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKVRFW 327 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--ceeeeecccccceEEE
Confidence 322222222222 3333344444888899999999999998888776433 356777766 4579999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe---eccCCCCeEEEEEeecc
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK---DHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~---~h~~~~~I~sl~fsp~~ 290 (702)
|+++..+...+..+ +.|++|..+++ |..|.+++.|.++.++|+|+....... +...+...+.+.|+|
T Consensus 328 D~Rs~~~~~sv~~g-------g~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-- 397 (459)
T KOG0288|consen 328 DIRSADKTRSVPLG-------GRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-- 397 (459)
T ss_pred eccCCceeeEeecC-------cceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC--
Confidence 99999999999988 79999999999 999999999999999999997755421 112244589999998
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCC--ceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEPTAG--KINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~--~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
++.++++++.||.|+||++.++++...+..... .|+++.|+|.+..+++++.+..+.+|
T Consensus 398 -d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 -DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 566666777899999999999999887766444 49999999999999999999888877
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=211.41 Aligned_cols=265 Identities=13% Similarity=0.185 Sum_probs=210.8
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQV 87 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I 87 (702)
|+|..+.++.|+||+|-.. + .+++.| .|..+|..++|+++|.. +.++++|..|
T Consensus 229 LlLS~gmD~~vklW~vy~~-~------------------------~~lrtf~gH~k~Vrd~~~s~~g~~-fLS~sfD~~l 282 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDD-R------------------------RCLRTFKGHRKPVRDASFNNCGTS-FLSASFDRFL 282 (503)
T ss_pred EEEecCCCceEEEEEEecC-c------------------------ceehhhhcchhhhhhhhccccCCe-eeeeecceee
Confidence 5788889999999999874 1 234555 47889999999999999 8999999999
Q ss_pred EEEEcCCceEEEeeecCCceEEEEEEcCCC-CEEEEEECCCeEEEEecCCceEEE---ecCCCccceEEecCCCcEEEEe
Q 005325 88 KVYELRQLSLKFERHLDSEIINFEVLADDY-SKLAFLCADRSISLHAKYGKHYSL---RIPRMGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 88 ~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~~~g~~~~~---~i~~~~~~l~~~~~s~~llv~s 163 (702)
++||+.+.......+.+. +..++-+.||+ +.+++|..|+.|..||+....... +.......+.|.+.+...++++
T Consensus 283 KlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 999999988888888665 55666677777 778999999999999987322111 1122334889999999999999
Q ss_pred cCCCEEEEECCCCeEEEEee-cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC---cceeEEecccCCCCCCCCeEE
Q 005325 164 SSPELYRINLEQGRFLSSLN-TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR---SSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 164 ~d~~V~vwdl~~g~~~~~l~-~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~---~~v~~l~~~~~~~~~~~~Vts 239 (702)
.++.+.+|+...+-.+.-+. .+.....||..+|+++++++-+.|+.|.|+.+... ..-..+..|. ..+.-..
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~----vaGys~~ 437 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS----VAGYSCQ 437 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee----ccCceee
Confidence 99999999998876654332 22335779999999999999999999999987632 2233444441 1356678
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
|.|||| |.+|++|+.||.|.+||.++.+.+. ++.| ..++..+.||| .....+++++.+|.|+||+
T Consensus 438 v~fSpD-G~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP--~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPD-GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHP--VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCC-CCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecC--CCcceeEecccCceeEecC
Confidence 999999 9999999999999999999988776 6777 78999999999 4466677777899999996
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4e-21 Score=186.70 Aligned_cols=268 Identities=15% Similarity=0.178 Sum_probs=210.8
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEec
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIY 83 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~ 83 (702)
.||.. +...+.+.+|+||+|..+ +-+-+|. ...|...|-.++|+|...-++++++.
T Consensus 30 ~~g~~-lasgs~dktv~v~n~e~~-r~~~~~~----------------------~~gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 30 CDGTK-LASGSFDKTVSVWNLERD-RFRKELV----------------------YRGHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred ccCce-eeecccCCceEEEEecch-hhhhhhc----------------------ccCCCcchhhheeCCCCCcceEEecC
Confidence 45654 355677888999999877 3332222 12356678888999988777999999
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce--EEEecCCCccceEEecCCCcEEE
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH--YSLRIPRMGRDMAYNSWSCDLLC 161 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~--~~~~i~~~~~~l~~~~~s~~llv 161 (702)
|..|++||+........-....+.+.. .++|++.+++.+..|..|.+.+..... .....+.+...++++ .+++++.
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni~i-~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~-~~nd~Ff 163 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENINI-TWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN-NSNDLFF 163 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcceEE-EEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec-CCCCEEE
Confidence 999999999986554444444444444 467788999999999999988876432 223445555577888 5566655
Q ss_pred EecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEE
Q 005325 162 AASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTAL 240 (702)
Q Consensus 162 ~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtsl 240 (702)
...+ |.|.++....-+.+.+++.|.....||.|+|+|++||+|+.|-.|.+||+..--++..+... .-+|..|
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl------dwpVRTl 237 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL------DWPVRTL 237 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc------cCceEEE
Confidence 5555 89999998899999999999999999999999999999999999999999988888888887 7899999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE-EeC---C------CEEEEEeC
Q 005325 241 EFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI-TTD---N------HIVRIWDP 310 (702)
Q Consensus 241 afspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~---D------g~V~IWd~ 310 (702)
.|+.+ |.+||+|+.|-.|-|=++.+|..++...+ .+|..+++||| ...||+ +++ + ++|+||-+
T Consensus 238 SFS~d-g~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHP----k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 238 SFSHD-GRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHP----KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred EeccC-cceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecC----CCceeeEEecCCCCccccccceeEEecC
Confidence 99999 99999999999999999999999886666 68999999999 556655 443 2 56666644
No 84
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=203.90 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=199.9
Q ss_pred cccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEE
Q 005325 47 IDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 47 ~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s 124 (702)
.++.+..++.|.+-.|+.+.|++-+|+|.| |+.|+-.+.|++|.+.+..+ .+.+|... ++++.|+.|+.+|++++
T Consensus 66 w~i~k~~~~~q~~v~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 66 WEILKKDQVVQYIVLPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSDDGSHIITGS 142 (476)
T ss_pred cccCchhhhhhhcccccceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeCCCcEEEecC
Confidence 444455555577788999999999999999 78888999999999999444 55667555 88999999999999999
Q ss_pred CCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEE
Q 005325 125 ADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIA 202 (702)
Q Consensus 125 ~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~lla 202 (702)
.|+.|.+|.+-. ++.+..+. +-.++..|..|+-+|+.+.+.+.+ ..|+
T Consensus 143 kDg~V~vW~l~~----------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 143 KDGAVLVWLLTD----------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred CCccEEEEEEEe----------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEE
Confidence 999999997531 12222221 334567788899999999987654 7999
Q ss_pred EEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe--------------
Q 005325 203 CGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-------------- 268 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-------------- 268 (702)
|+|.|.++++||+..+..+.++..+ ..+++|+.+|. +..+.+|+.+|.|.+.++-...
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~fp-------~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITFP-------SSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred EecCCceEEEEEeccceeeEEEecC-------CcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 9999999999999999999999888 89999999999 9999999999999998875322
Q ss_pred --EE-EEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEE
Q 005325 269 --PI-RVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLL 339 (702)
Q Consensus 269 --~l-~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~ 339 (702)
.+ .+.+|.++.+|+|++.+- ++.+|++| .||.|+|||+.+.+++.++....++|+.+.+.|-...++
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~----DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAIST----DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred cceeeeeccccCCcceeEEEEec----CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 11 257787677999999995 66666665 699999999999999988884488999999977544333
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=4.4e-22 Score=208.48 Aligned_cols=235 Identities=16% Similarity=0.213 Sum_probs=182.5
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe-----cCC---CccceEEecCCCcEEEEecCCCEEEEECCC
Q 005325 104 DSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR-----IPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQ 175 (702)
Q Consensus 104 ~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~-----i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~ 175 (702)
...+|..+.+.|.|..|++|+.|-+|++|+..|....++ .|. ..+++.|.+.+..+++++......++|-.-
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 456799999999999999999999999999987443322 233 234788888888899999999999998765
Q ss_pred CeEEEE------------eecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEE
Q 005325 176 GRFLSS------------LNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALE 241 (702)
Q Consensus 176 g~~~~~------------l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtsla 241 (702)
...+.. -++|...++|.+|+|.. ..|++++.||+++|||+...+ ...+|... ......-++++++
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCA 324 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-cCCCcccCceeee
Confidence 444333 24688899999999987 789999999999999998644 44444433 2234467899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCCe--EEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-Ccee
Q 005325 242 FDSNGGFLMGVGSSTGKVLIYDLRSSY--PIR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESM 316 (702)
Q Consensus 242 fspd~g~~LasGs~DG~V~lwDlrs~~--~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l 316 (702)
|+|+ |..||+|+.||.|.+||.++.. |.. -..|..+..|+||.|++ ++.+|++-+.|++++|||++. .+++
T Consensus 325 ~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~---dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 325 WNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY---DGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred cCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc---ccchhhhccCCCceeeeeccccccch
Confidence 9999 9999999999999999987632 333 35676667999999997 566666667899999999986 4555
Q ss_pred EEecCC--CCceeEEEEEcCCCEEEEEeC
Q 005325 317 TSIEPT--AGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 317 ~~i~~h--~~~I~~v~~~p~~~~l~~a~~ 343 (702)
....+- .-+-+++||+|+..+|++++.
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEeccc
Confidence 443332 346678999999999998865
No 86
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=7e-21 Score=212.76 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=176.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecCCceEEEec---------------C-CCccceEEecCC-CcEEEEecCCCEEEEE
Q 005325 110 FEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI---------------P-RMGRDMAYNSWS-CDLLCAASSPELYRIN 172 (702)
Q Consensus 110 ~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i---------------~-~~~~~l~~~~~s-~~llv~s~d~~V~vwd 172 (702)
+...++|+..+++++.+.....|+..|....+.+ + ....++.|++.. ..|++++.|+.|++||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 3334455566666666666666765432221111 1 122377787744 4588899999999999
Q ss_pred CCCC-------eEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 173 LEQG-------RFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 173 l~~g-------~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
+.++ ..+..+.+|...|.+|+|+|.+ ++|++|+.|++|+|||+.+++.+..+..| ...|++|+|+|
T Consensus 105 i~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h------~~~V~sla~sp 178 (493)
T PTZ00421 105 IPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH------SDQITSLEWNL 178 (493)
T ss_pred cCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC------CCceEEEEEEC
Confidence 9765 3467788999999999999986 79999999999999999999888888777 68899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCC-ceeEE
Q 005325 245 NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETG-ESMTS 318 (702)
Q Consensus 245 d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg-~~l~~ 318 (702)
+ |.+|++|+.|+.|+|||+++++++. +..|. +..+..+.|+| ++..+++++ .|+.|+|||+++. .++..
T Consensus 179 d-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 179 D-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred C-CCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9 9999999999999999999998776 55663 23345778887 345565554 3799999999874 45555
Q ss_pred ecCCC-CceeEEEEEcCCCEEEEEe-CCCcEEEEEcCC
Q 005325 319 IEPTA-GKINDVCVFKDSGLLLLAL-DCSQIPSYFIPD 354 (702)
Q Consensus 319 i~~h~-~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ip~ 354 (702)
+..+. ..+....|++++.+|++++ .|+.|++|.+..
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 54433 3555566888999999887 599999998865
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=2.6e-22 Score=205.63 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=201.4
Q ss_pred EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeeccc-CCCceeEEEECCCCCEEEEEEecCCcEEEEEc
Q 005325 14 TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLW-FETATTKIRETPDGEFLIVSGIYPPQVKVYEL 92 (702)
Q Consensus 14 s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl 92 (702)
..+-.|++|++.++ + .++++.+. -.+.++.+.|.+++++ +++.++|+.+++|++
T Consensus 194 g~Dr~Ik~W~v~~~-k-----------------------~~~~~tLaGs~g~it~~d~d~~~~~-~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGE-K-----------------------SELISTLAGSLGNITSIDFDSDNKH-VIAASNDKNLRLWNV 248 (459)
T ss_pred chhhhhhhhhcccc-h-----------------------hhhhhhhhccCCCcceeeecCCCce-EEeecCCCceeeeec
Confidence 34566788888777 2 13333332 3467999999999999 677789999999999
Q ss_pred CCc--eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecCC-CccceEEecCCCcEEEEecCCCE
Q 005325 93 RQL--SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIPR-MGRDMAYNSWSCDLLCAASSPEL 168 (702)
Q Consensus 93 ~~~--~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~~-~~~~l~~~~~s~~llv~s~d~~V 168 (702)
.+. ..++.+|.+. ++.+-+.-....+++++.|++|++|++.. .+....+|. .+.+|.+. ...++++..+..|
T Consensus 249 d~~r~~~TLsGHtdk--Vt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDK--VTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred cchhhhhhhcccccc--eeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccce
Confidence 983 3477888766 55555554445599999999999999984 333333333 23355554 4457778889999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC
Q 005325 169 YRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF 248 (702)
Q Consensus 169 ~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~ 248 (702)
..||..+..+......+. .|++|..++++.-|.+++.|.++.+.|+++....+.+......- ...++.+.|||+ +.
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~--asDwtrvvfSpd-~~ 400 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC--ASDWTRVVFSPD-GS 400 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc--ccccceeEECCC-Cc
Confidence 999999999999888887 89999999999989999999999999999998888887652111 245899999999 99
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 249 LMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 249 ~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
|+|+|+.||.|+||++.++++... ........|+++.|+| .+..+++++.++.+.+|
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~---sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP---SGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC---CCchhhcccCCcceEec
Confidence 999999999999999999998763 3332233699999998 56777777789999999
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.1e-21 Score=190.08 Aligned_cols=282 Identities=14% Similarity=0.183 Sum_probs=214.0
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc---eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL---SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKH 138 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~---~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~ 138 (702)
..|.+|+|||....++++|+.|++|+||++... .-+....++.++.+++ ++.||+++++++.|+.+++|++. +..
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~-WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC-WSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEE-EccCCceEEeeccCCceEEEEccCCCe
Confidence 678999999977777889999999999999872 1133333355555554 67899999999999999999998 544
Q ss_pred EEEecCC-CccceEEecCCC--cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 139 YSLRIPR-MGRDMAYNSWSC--DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 139 ~~~~i~~-~~~~l~~~~~s~--~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
..+..+. ..+.+.+.+... .|++++-|.+|..||+.+...+.++.... .|.++.+ .+.++++++.+..|.+|++
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEecCCcEEEEEc
Confidence 4444433 334666666555 47889999999999999999888876654 4666554 4578999999999999999
Q ss_pred CCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE---EEEeeccC-------CCCeEEE
Q 005325 216 RMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP---IRVKDHMF-------DSPIVDI 284 (702)
Q Consensus 216 ~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~---l~~~~h~~-------~~~I~sl 284 (702)
+++.. ...+..+ ....+.||+..++ ....|.|+-.|.|-|..+..+.+ ..++.|.. -.+|++|
T Consensus 184 ~n~~te~k~~~Sp-----Lk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 184 ENPPTEFKRIESP-----LKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred CCCcchhhhhcCc-----ccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 86542 2222222 2578999999998 88889999999999999987633 33677752 1258899
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEe--CCCcEEEEEcCCCCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLAL--DCSQIPSYFIPDLGP 357 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~--~d~~I~~~~ip~lg~ 357 (702)
+||| -.+.+++.|+||++.+||......+.+.+.|..+|++.+|+.++.+++.|. +-.+=+.++-|+..+
T Consensus 258 ~FhP---~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~ 329 (347)
T KOG0647|consen 258 AFHP---VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKP 329 (347)
T ss_pred Eeec---ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCC
Confidence 9999 457788888999999999998888888899999999999999999877653 333444455555443
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.5e-20 Score=192.37 Aligned_cols=289 Identities=12% Similarity=0.058 Sum_probs=202.5
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+++...++.|.+|++.++ + .++.+.....+.+++|+|||++++++++.++.|.+
T Consensus 4 ~~s~~~d~~v~~~d~~t~-~-------------------------~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATL-E-------------------------VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQV 57 (300)
T ss_pred EEEecCCCEEEEEECCCC-c-------------------------eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEE
Confidence 355567888999999877 2 12223333446789999999987788888999999
Q ss_pred EEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCCceEEEecC--CCccceEEecCCCcEEEEecCC
Q 005325 90 YELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYGKHYSLRIP--RMGRDMAYNSWSCDLLCAASSP 166 (702)
Q Consensus 90 wdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g~~~~~~i~--~~~~~l~~~~~s~~llv~s~d~ 166 (702)
||+.+............+ ..+.+++++..++++ ..++.|.+|++........++ .....+.+.+....+++++.++
T Consensus 58 ~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 58 IDLATGEVIGTLPSGPDP-ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred EECCCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence 999874432221112222 345678888877554 568999999997533322232 2344777877776677776654
Q ss_pred -CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEECCCCcceeEEecccCC-CCCCCCeEEEEEc
Q 005325 167 -ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GEDGAVECFDMRMRSSAARINAVAPA-GDADQEVTALEFD 243 (702)
Q Consensus 167 -~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V~iWD~~t~~~v~~l~~~~~~-~~~~~~Vtslafs 243 (702)
.++.||..++..+..+... ..+.+++|+|++.+|+++ ..++.|.+||+.+++.+..+..+... .........++|+
T Consensus 137 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 4677899988876655433 346789999999877544 46899999999998887776543110 0011234578999
Q ss_pred CCCCCEEEE-EeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecC
Q 005325 244 SNGGFLMGV-GSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 244 pd~g~~Las-Gs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
|+ +.++++ ...++.|.+||+.+++.+....+ +..+.+++|+| ++..+++++ .++.|.|||+.+++++..++.
T Consensus 216 ~d-g~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 216 KD-GKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CC-CCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99 887554 45577899999998887664444 45789999998 444455543 589999999999999999987
Q ss_pred CCCceeEEEEEc
Q 005325 322 TAGKINDVCVFK 333 (702)
Q Consensus 322 h~~~I~~v~~~p 333 (702)
....+.++++|
T Consensus 290 -~~~~~~~~~~~ 300 (300)
T TIGR03866 290 -GRLPWGVVVRP 300 (300)
T ss_pred -ccccceeEeCC
Confidence 56668888765
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-21 Score=189.29 Aligned_cols=183 Identities=16% Similarity=0.236 Sum_probs=152.8
Q ss_pred EEEecCCCEEEEECC-CCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 160 LCAASSPELYRINLE-QGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 160 lv~s~d~~V~vwdl~-~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
++++.||.+.+||+. ...++..++.|...|.+|.|++.. ..++++|.|++|++||+...+.+.++..| ...|
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh------~~~I 150 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH------NSCI 150 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC------ccEE
Confidence 344444444445532 224667888999999999999865 67788899999999999999999999988 7999
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC-Cc
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET-GE 314 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g~ 314 (702)
...+|+|..+..|++++.||+++|||+|. ++++.+..| ...|.++.|+. -+.++|+++ .|+.|++||+++ ..
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah--~~Eil~cdw~k---y~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH--NSEILCCDWSK---YNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec--cceeEeecccc---cCCcEEEecCCCceEEEEehhhccc
Confidence 99999998799999999999999999996 667778888 57999999996 355666655 699999999997 46
Q ss_pred eeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcC
Q 005325 315 SMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 315 ~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip 353 (702)
++..+.+|.-.|..|.|+| ...+|++|+-|-++++|...
T Consensus 226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 226 PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred cceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 8889999999999999999 45689999999999999643
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.3e-20 Score=187.40 Aligned_cols=267 Identities=14% Similarity=0.165 Sum_probs=210.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSL 141 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~ 141 (702)
..|++|.|+|.+.+ |+++++||.+++|++....++..-.+..++.++++.. ...+++++.|+.|+.+|+. +....+
T Consensus 14 d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 14 DGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCcceee
Confidence 67999999999999 5556799999999999977766666677777777654 3889999999999999998 444443
Q ss_pred ecC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc
Q 005325 142 RIP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS 220 (702)
Q Consensus 142 ~i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~ 220 (702)
..+ ...+++.+.+....+++++.|+.|.+||......+..+.... .|.|+..+ ++.|++|+.|..|.+||+|+...
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeecCceEEEEEcccccc
Confidence 333 344588888888889999999999999998755555554333 78888765 67899999999999999997654
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-----eEEEEeeccC-------CCCeEEEEEee
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-----YPIRVKDHMF-------DSPIVDIKWHQ 288 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~-----~~l~~~~h~~-------~~~I~sl~fsp 288 (702)
..+.... .-.-.+.||++-|+ +.-+++++-+|.|.+=.+... +...++.|.. ..||++|+|||
T Consensus 168 ~~q~reS----~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 168 PFQRRES----SLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred hhhhccc----cceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 3322221 12467999999998 888999999999998766654 2344666631 23899999999
Q ss_pred ccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeC
Q 005325 289 SINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 289 ~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
-.+.+++++.||.|.+||+.+-+.+..+......|..++|+.++.+|++|+.
T Consensus 243 ---~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 ---IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 2456777789999999999999999888887788999999999999999876
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7e-21 Score=187.50 Aligned_cols=287 Identities=12% Similarity=0.132 Sum_probs=218.8
Q ss_pred CCCceeEEEECCC-CCEEEEEEecCCcEEEEEcCCce--------EE--E---eee---cCCceEEEEEEcCCCCEEEEE
Q 005325 61 FETATTKIRETPD-GEFLIVSGIYPPQVKVYELRQLS--------LK--F---ERH---LDSEIINFEVLADDYSKLAFL 123 (702)
Q Consensus 61 ~~~~v~~i~~SpD-G~~llatGs~dg~I~vwdl~~~~--------~~--~---~~h---~~~~vv~~~~ls~dg~~Las~ 123 (702)
|.+.|+++.+.+. |+| +++|+.||.|.|||+.+.. .+ . ..| +...|.++.|++-|...+.++
T Consensus 42 HgGsvNsL~id~tegry-mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRY-MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred CCCccceeeeccccceE-EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5689999999874 677 9999999999999998722 11 1 111 234578899999999999999
Q ss_pred ECCCeEEEEecCC--ceEEEecCCCccceEEecCCC--c-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC
Q 005325 124 CADRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSC--D-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 124 s~D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~--~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
+.|.++++||... ..+.+.++.....-++.|... . ++++..+..|.+.|+.+|.+..++.+|...|.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 9999999999884 344455555544434444332 2 4555566689999999999999999999999999999987
Q ss_pred -CEEEEEEcCCeEEEEECCCC-cceeEEecccC--------CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 199 -GLIACGGEDGAVECFDMRMR-SSAARINAVAP--------AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 199 -~llasgs~DG~V~iWD~~t~-~~v~~l~~~~~--------~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
-.|++|+.||.|++||+|.- .+..+++.|.. ...|.+.|..++|..+ |.++++.+.|..+++|+..+++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCc
Confidence 57889999999999999965 57777776631 1357889999999999 9999999999999999998876
Q ss_pred EEE----EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 269 PIR----VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 269 ~l~----~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
... -..|. .-++.+++-...+.+.++.--.++.+.++++-+|..+..+..|-..|++.++-|+=..++++..+
T Consensus 280 ntl~~~g~~~~n---~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 280 NTLREFGPIIHN---QTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred cccccccccccc---ccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 322 12221 11222222100112223333356899999999999999999998899999999998899999999
Q ss_pred CcEEEEEc
Q 005325 345 SQIPSYFI 352 (702)
Q Consensus 345 ~~I~~~~i 352 (702)
+.|..|..
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99998865
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=210.68 Aligned_cols=299 Identities=15% Similarity=0.154 Sum_probs=219.2
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-------------cCCCceeEEEECCCCCE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-------------WFETATTKIRETPDGEF 76 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-------------~~~~~v~~i~~SpDG~~ 76 (702)
+++++++|+|++|++..+ ..--.+--.--...|.+.+-.....++|.+- +-.-.+.||++||+|++
T Consensus 395 F~TCSsD~TIRlW~l~~c-tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFC-TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred eeEecCCCcEEEeecccc-cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 689999999999999886 2111110000001112222222222333332 22356899999999999
Q ss_pred EEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCCccceEE
Q 005325 77 LIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAY 152 (702)
Q Consensus 77 llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~ 152 (702)
||+|..-|.|+||++.++.+ .++.| +++|.++.+..|+ .+.||+++.|+.|.|+|+...+
T Consensus 474 -LAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-------------- 537 (1080)
T KOG1408|consen 474 -LASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-------------- 537 (1080)
T ss_pred -ecccCccCceEEEEehhhhhhhheecc-cceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--------------
Confidence 99999999999999998544 56667 7777777655443 2467899999999887765322
Q ss_pred ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEECCCCcceeEEecccCC
Q 005325 153 NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIACGGEDGAVECFDMRMRSSAARINAVAPA 230 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~ 230 (702)
.++.++.+|++.|++|.|.-.+ ..+++++.|..|.+--.+.......+..+...
T Consensus 538 ------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 538 ------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred ------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 2346788999999999998777 67888999888754333321222222222111
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Ee-eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 231 GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VK-DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 231 ~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~-~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
. ....++.|+..|. ..++++++.|..|+|||+.+++... ++ .|.+.+....+...| .+-++++++.|+++.|+
T Consensus 594 ~-~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP---SgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 594 L-SKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP---SGIYLATSCSDKTLCFV 668 (1080)
T ss_pred c-ccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC---CccEEEEeecCCceEEE
Confidence 1 1367899999999 9999999999999999999999877 33 233445667788888 46667777799999999
Q ss_pred eCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 309 DPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 309 d~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
|..+|+++..+.+|...|+.+.|.++-..|++++.|+.|.+|.+|.
T Consensus 669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999999999999999999999874
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=192.78 Aligned_cols=274 Identities=15% Similarity=0.191 Sum_probs=195.3
Q ss_pred eeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceE----EEeeecCCceEEEEEEcCCCCEE-EEEECC-C
Q 005325 55 LIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSL----KFERHLDSEIINFEVLADDYSKL-AFLCAD-R 127 (702)
Q Consensus 55 liqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~----~~~~h~~~~vv~~~~ls~dg~~L-as~s~D-~ 127 (702)
|++.-.|.++|+||+|++.+.. ++|++.|++-+||...- ... .-..|...+-.... ..+.... -+...| .
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L-~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s--De~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLL-LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS--DEHNRDTDSSEKSDGH 259 (481)
T ss_pred eeeecccccceeeEEeccccce-EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc--cccccccccccccCCc
Confidence 3444568899999999999988 89999999999997321 000 00111110000000 0000000 011122 2
Q ss_pred eEEEEecCCceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE
Q 005325 128 SISLHAKYGKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG 204 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg 204 (702)
+|++ . .+++..+-. +..|......+++++-|.+..+||+++|..+..+.+|...++.++-+|...++++.
T Consensus 260 tiRv-----P--l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 260 TIRV-----P--LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeee-----e--eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 3433 1 111111111 22334445568899999999999999999999999999999999999999999999
Q ss_pred EcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEEEeeccCCCCeE
Q 005325 205 GEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIRVKDHMFDSPIV 282 (702)
Q Consensus 205 s~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~~~~h~~~~~I~ 282 (702)
+.|.+.++||.+. -..+..|.+| ...|+++.|..+ ..+++|+.|.+|+|||+++.. |+.+... .++++
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGH------tdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~N 402 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGH------TDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPAN 402 (481)
T ss_pred ccCceeEeccchhhcceeeeeccc------ccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeeec--CCccc
Confidence 9999999999993 2456667776 799999999965 789999999999999999854 6665555 57999
Q ss_pred EEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEE-----ecCCCCceeEEEEEcCC--CEEEEEeCCCcEEEEEcC
Q 005325 283 DIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTS-----IEPTAGKINDVCVFKDS--GLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~-----i~~h~~~I~~v~~~p~~--~~l~~a~~d~~I~~~~ip 353 (702)
.++.+. +..+++-- ++..|++||++ |..+.. -.+|..-|.|++|..+. .-|++|+.|..+..|.|.
T Consensus 403 Rvavs~----g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 403 RVAVSK----GHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeEeec----CCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 999984 66666654 78999999997 443333 45788899999997644 358999999999999874
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=204.92 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=231.9
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
++.+++.+.++||||.++ + ++..| +|...||++.-+|-=.. +|.|..+|+|.
T Consensus 175 IvvGs~~G~lql~Nvrt~-K-------------------------~v~~f~~~~s~IT~ieqsPaLDV-VaiG~~~G~Vi 227 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTG-K-------------------------VVYTFQEFFSRITAIEQSPALDV-VAIGLENGTVI 227 (910)
T ss_pred EEEeecCCcEEEEEeccC-c-------------------------EEEEecccccceeEeccCCcceE-EEEeccCceEE
Confidence 566788999999999998 2 33444 46688999999998777 89999999999
Q ss_pred EEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEE--EecCC--CccceEEecCCCcEEEEe
Q 005325 89 VYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHYS--LRIPR--MGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 89 vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~--~~i~~--~~~~l~~~~~s~~llv~s 163 (702)
|+++......+....+..-+..+.|..||..+ ++++..|.+.+||+.+.... ++-.+ ......+.+..+-+++++
T Consensus 228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 99998844433333343346666778788765 67777899999999854332 22111 112344444444455555
Q ss_pred cCCCEEEE--ECCCC-------------------------eEEEE-----------------------------------
Q 005325 164 SSPELYRI--NLEQG-------------------------RFLSS----------------------------------- 181 (702)
Q Consensus 164 ~d~~V~vw--dl~~g-------------------------~~~~~----------------------------------- 181 (702)
.|+.+.+| |...| .++.+
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 55543333 31111 00000
Q ss_pred --------------------------------------------------eecCC------CCeEEEEEcCCCCEEEEEE
Q 005325 182 --------------------------------------------------LNTQS------PALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 182 --------------------------------------------------l~~h~------~~V~~l~~sp~~~llasgs 205 (702)
.-.+. ..+++|+.++.|++.+.|+
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 00011 3578899999999999999
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIK 285 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~ 285 (702)
..|+|.+|++.+|-...++.. ...|..+|+.|+.+.- +..+++++.+|.+.+||.....++....- +.+++++.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~---~~ah~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv 541 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGD---SPAHKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIV 541 (910)
T ss_pred cCCeEEEEEcccCeeeccccc---CccccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeecc--CCCcceee
Confidence 999999999999987777741 1235899999999987 88999999999999999998887665444 56889999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
++. ..+.++++++|-.|.|+|+.+.+.+..+.+|...|++++|+|++..|++++.|+.|++|.+|...
T Consensus 542 ~hr---~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 542 YHR---VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred eee---hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 985 45556667799999999999999999999999999999999999999999999999999999854
No 96
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=4.2e-20 Score=207.69 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=174.0
Q ss_pred EEecCCcEEEEEcCCc--eEEEeeecCCceEEEEEEcCC-CCEEEEEECCCeEEEEecCC-ce--E-----EEecCC---
Q 005325 80 SGIYPPQVKVYELRQL--SLKFERHLDSEIINFEVLADD-YSKLAFLCADRSISLHAKYG-KH--Y-----SLRIPR--- 145 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~--~~~~~~h~~~~vv~~~~ls~d-g~~Las~s~D~~I~iw~~~g-~~--~-----~~~i~~--- 145 (702)
+|+..+.|++|++... ...+.+|.. . +..+.++|+ +..|++++.|++|+||++.. .. . ...+..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~-~-V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTS-S-ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCC-C-EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 4667889999998663 335666743 3 455556665 78999999999999999862 11 0 011122
Q ss_pred CccceEEecCCCcE-EEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEE
Q 005325 146 MGRDMAYNSWSCDL-LCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 146 ~~~~l~~~~~s~~l-lv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l 224 (702)
...++.|+|....+ ++++.|+.|.+||+.+++.+..+. |...|.+++|+|++.+|++++.|+.|+|||++++..+.++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 22377888876665 577889999999999998877775 5578999999999999999999999999999999999888
Q ss_pred ecccCCCCCCCCeE-----EEEEcCCCCCEEEEEeCCC----eEEEEEcCC-CeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 225 NAVAPAGDADQEVT-----ALEFDSNGGFLMGVGSSTG----KVLIYDLRS-SYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 225 ~~~~~~~~~~~~Vt-----slafspd~g~~LasGs~DG----~V~lwDlrs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
..| .+.+. ...|+++ +.+|++++.++ +|+|||+++ ..++....+.....+....|.+ +.+
T Consensus 206 ~gH------~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~---~tg 275 (568)
T PTZ00420 206 HIH------DGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE---STG 275 (568)
T ss_pred ecc------cCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC---CCC
Confidence 887 34333 3345688 88888877664 799999995 6677654442222222233443 234
Q ss_pred C-eEEEeCCCEEEEEeCCCCceeEEec--CCCCceeEEEEEcCCC
Q 005325 295 P-KLITTDNHIVRIWDPETGESMTSIE--PTAGKINDVCVFKDSG 336 (702)
Q Consensus 295 ~-ll~ss~Dg~V~IWd~~tg~~l~~i~--~h~~~I~~v~~~p~~~ 336 (702)
. +++++.|++|++|++..+.. ..+. .+..++..++|.|...
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 4 44555899999999987643 2222 2467889999999765
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=210.27 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=192.3
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY- 135 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~- 135 (702)
..|.+.|.++++..-+.+ +++|+.|.+++|||+.+... .+.+|... +.++.. ...++++++.|.+|++|++.
T Consensus 246 ~GH~g~V~~l~~~~~~~~-lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~--~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDK-LVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTI--DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred cCCCCCceeEEEecCCCE-EEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEc--cCceEeeccCCceEEEEeccC
Confidence 358899999999884444 99999999999999988444 45556333 444433 44778889999999999998
Q ss_pred CceEEEecCC--CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 136 GKHYSLRIPR--MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 136 g~~~~~~i~~--~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
+....+.... ..+++.+. ...+++++.++.|.+||+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++|
T Consensus 321 ~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 321 GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVW 397 (537)
T ss_pred cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEee
Confidence 5555543321 12244444 455888899999999999999999999999999999988765 899999999999999
Q ss_pred ECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCC
Q 005325 214 DMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 214 D~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~ 292 (702)
|+++. +++.++..| ..-|+.+.+. +..|++++.||+|++||..++.++......+...|+.+++.
T Consensus 398 dl~~~~~c~~tl~~h------~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~----- 463 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGH------TSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG----- 463 (537)
T ss_pred cCCchhhhhhhhcCC------cccccccccc---cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-----
Confidence 99999 999999998 5677777765 67999999999999999999998884333224688888875
Q ss_pred CCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 293 ERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 293 ~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
...+++++.++.+++||+.++++...+-
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred cceEEEEecCCeeEEEecccCchhhhhh
Confidence 4578888899999999999998887663
No 98
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.2e-22 Score=207.53 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=252.1
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI 143 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i 143 (702)
....+.++.+|++ |+.|+..|.|-.+|..+..+.++.+....|.++.|+... +++|.+. -..+.|
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQ-K~y~yv------------ 195 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQ-KKYVYV------------ 195 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhh-hceEEE------------
Confidence 4567899999999 788889999999999998888888877777777777754 4444443 334444
Q ss_pred CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE
Q 005325 144 PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR 223 (702)
Q Consensus 144 ~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~ 223 (702)
||- .|..+..+..|. .|+.+.|.|.|-+|++++..|.+..-|+.+|+.+..
T Consensus 196 ---------------------------YD~-~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~ 246 (545)
T KOG1272|consen 196 ---------------------------YDN-NGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS 246 (545)
T ss_pred ---------------------------ecC-CCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHH
Confidence 442 344555565555 699999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
+... .+.+..|+-+|- ...+-+|.+.|+|.+|...+.+|+. +..| .++|.+|++.| .+.++++++.|
T Consensus 247 ~~t~------~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKiLcH--~g~V~siAv~~---~G~YMaTtG~D 314 (545)
T KOG1272|consen 247 IRTG------AGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKILCH--RGPVSSIAVDR---GGRYMATTGLD 314 (545)
T ss_pred HHcc------CCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHHHhc--CCCcceEEECC---CCcEEeecccc
Confidence 9888 689999999999 8899999999999999999999887 7888 78999999997 56666777789
Q ss_pred CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCcccccchhhhcCCcccccc
Q 005325 303 HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESMTEELEEGGQTTIYD 382 (702)
Q Consensus 303 g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~lteelee~~~~~~yd 382 (702)
+.|+|||+++-..+.++.. ..+.+.++++..+ +++++.+..+.+|---.-+ .| |....-++.- ......
T Consensus 315 r~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~-s~--~~~~pYm~H~-----~~~~V~ 383 (545)
T KOG1272|consen 315 RKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKG-SG--HGETPYMNHR-----CGGPVE 383 (545)
T ss_pred cceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcC-CC--CCCcchhhhc-----cCcccc
Confidence 9999999998776666655 5667777777654 4555666677777422211 11 1111111111 112556
Q ss_pred CccccCHHHHhhcCCCcccC-cccccccccccccchHhHHHHHhhcCCchhHHHHHHH-HHHHHHHHhccccccccccc-
Q 005325 383 NYKFLTREDLEKLNLTSLIG-TNLLRAYMHGFFVDYRLYKKAKALVDPFAYESYIEEQ-KQKKLEQQRSSRITLKRKLP- 459 (702)
Q Consensus 383 ~ykfvt~~el~~l~l~~liG-t~~l~~ymhgy~~~~~ly~~~~~~~~p~~~~~~r~~~-i~~~~~~~~~~ri~~~~~~~- 459 (702)
+..|++.+|+ ||+.|.-| |++|.|-...-.+|. ...|||.-..+|+++ |+..|||.++..|.+.+...
T Consensus 384 ~l~FcP~EDv--LGIGH~~G~tsilVPGsGePN~Ds-------~e~nPfetrKQRqE~EVr~LLeKippElIsLdp~~i~ 454 (545)
T KOG1272|consen 384 DLRFCPYEDV--LGIGHAGGITSILVPGSGEPNYDS-------LEDNPFETRKQRQEKEVRSLLEKIPPELISLDPRVIG 454 (545)
T ss_pred cceeccHHHe--eeccccCCceeEeccCCCCCCcch-------hccCcchhhhHHhHHHHHHHHhhCChHhEEechhhcc
Confidence 7899999999 99999999 999999887766665 358999998888777 99999999999999875432
Q ss_pred cccHHHHH
Q 005325 460 KVNRGLAA 467 (702)
Q Consensus 460 ~vn~~~~~ 467 (702)
.||+...+
T Consensus 455 ~vd~~~~~ 462 (545)
T KOG1272|consen 455 IVDEPSLE 462 (545)
T ss_pred ccCcccch
Confidence 56655443
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.7e-22 Score=205.89 Aligned_cols=235 Identities=16% Similarity=0.211 Sum_probs=190.8
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEecCCceEEE---ecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee
Q 005325 108 INFEVLADDYS-KLAFLCADRSISLHAKYGKHYSL---RIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 108 v~~~~ls~dg~-~Las~s~D~~I~iw~~~g~~~~~---~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
++.+.|+|.-- -+|+.+ .-.+.|++..+....- ++.....++.|...+.-+++|...|.|.++|..+...++.+.
T Consensus 29 vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ 107 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY 107 (487)
T ss_pred ceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh
Confidence 66666776322 233333 3457787766433322 233334466666666668888889999999987777788899
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 005325 184 TQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIY 262 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lw 262 (702)
.|+.+|..+.|+|.+ .+|++|++|+.+++||+.+......+..| ...|.|.+|+|.++..+++|+.||.|++|
T Consensus 108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h------tDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH------TDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC------cceeEeeccccCCCeEEEecCCCceEEEE
Confidence 999999999999987 67888999999999999988865566666 89999999999877899999999999999
Q ss_pred EcCCC-eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-CceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 263 DLRSS-YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 263 Dlrs~-~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
|+|+. .++....| +.||-++.|.| ++.+++++..+.|+|||+.+ ++.++....|...|+|+++..++.-|++
T Consensus 182 DtR~~~~~v~elnh--g~pVe~vl~lp----sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 182 DTRSLTSRVVELNH--GCPVESVLALP----SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred EeccCCceeEEecC--CCceeeEEEcC----CCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence 99987 56667888 78999999998 77889999899999999995 5666777779999999999999999999
Q ss_pred EeCCCcEEEEEcCCC
Q 005325 341 ALDCSQIPSYFIPDL 355 (702)
Q Consensus 341 a~~d~~I~~~~ip~l 355 (702)
++-|+.|.+|.+...
T Consensus 256 ~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNY 270 (487)
T ss_pred cccccceEEEEccce
Confidence 999999999985543
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=1.1e-20 Score=204.46 Aligned_cols=275 Identities=13% Similarity=0.133 Sum_probs=212.6
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
|..-|..+++.+.. . +++++.|+++++|+-.. ....+..|...-....+.+..+...|++++.|.+|.+|.+.+
T Consensus 13 H~~DVr~v~~~~~~-~-i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~ 90 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGV-C-IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ 90 (745)
T ss_pred CccchheeEecCCe-E-EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC
Confidence 56666677776655 4 79999999999999855 223466664443333555545666799999999999998885
Q ss_pred ceEEEecCCCccceEEecCCC--cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 137 KHYSLRIPRMGRDMAYNSWSC--DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~--~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
..-...+..+...+++..... .+++++-|.++.+|-+. ++...+.+|...|++++.-|.+ .++|||.|.+|++|.
T Consensus 91 ~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 91 AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred CCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 433333333333444444322 37899999999999754 4556689999999999999887 999999999999998
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
- ++.+.+|..| ...|..+++-|+ ..|++++.||.|++|++.....+...+| ..-|.++...+ +++
T Consensus 168 ~--~~~l~tf~gH------tD~VRgL~vl~~--~~flScsNDg~Ir~w~~~ge~l~~~~gh--tn~vYsis~~~---~~~ 232 (745)
T KOG0301|consen 168 G--GTLLKTFSGH------TDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDGEVLLEMHGH--TNFVYSISMAL---SDG 232 (745)
T ss_pred C--Cchhhhhccc------hhheeeeEEecC--CCeEeecCCceEEEEeccCceeeeeecc--ceEEEEEEecC---CCC
Confidence 6 6788999988 799999999977 6789999999999999944444447777 67899999554 467
Q ss_pred CeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005325 295 PKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 295 ~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
.+++++.|++++||+.. .+.+.|......|+++++.+++. |++|+.||.|++|....-..|
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 77778899999999987 78888877456999999998877 889999999999987754443
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=187.25 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=206.6
Q ss_pred EEEEecCCcEEEEEcCCc--------------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-Ee
Q 005325 78 IVSGIYPPQVKVYELRQL--------------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LR 142 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~--------------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~ 142 (702)
|++|+|...|..+++.-. ...|..|..+ +.++++ ++.++|+++.|-+|.|||....... .-
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~s--itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGS--ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccc--eeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence 678888888888876431 1134445333 444444 4689999999999999998743222 22
Q ss_pred cCCCcc--ceEEecCCC--cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 143 IPRMGR--DMAYNSWSC--DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 143 i~~~~~--~l~~~~~s~--~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
+.+.+. ++.|.++.. .|++|+.||.|.+|+.....++.+++.|.+.|+.|+++|.+.+.++.+.|+.+++||+-.+
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 222333 666666555 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
+....+... ...+.|.|+|. |.+|+++..+ .|-||.+.+...+..... ...+.++.|. +++.+++
T Consensus 160 r~a~v~~L~-------~~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~--~~r~l~~~~l----~~~~L~v 224 (362)
T KOG0294|consen 160 RVAFVLNLK-------NKATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN--PKRILCATFL----DGSELLV 224 (362)
T ss_pred ccceeeccC-------CcceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc--cccceeeeec----CCceEEE
Confidence 888777776 45566999999 9999987765 588999988766543333 2457888887 4888999
Q ss_pred EeCCCEEEEEeCCCCceeEEecCCCCceeEEEEE--cCCCEEEEEeCCCcEEEEEcCC
Q 005325 299 TTDNHIVRIWDPETGESMTSIEPTAGKINDVCVF--KDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 299 ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~--p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++++..|.+||.+++.++..+.+|...|-++.+. |.+.+|++++.||.|.+|.+..
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 9999999999999999999999999999999864 4678999999999999998865
No 102
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.1e-19 Score=186.85 Aligned_cols=272 Identities=14% Similarity=0.182 Sum_probs=214.7
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY 139 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~ 139 (702)
..|.|++|.++|.. +||..+|.|.||+...... ....| +..|..++.+- + ..|++++.|+.|..|+.. ....
T Consensus 247 k~Vl~v~F~engdv--iTgDS~G~i~Iw~~~~~~~~k~~~aH-~ggv~~L~~lr-~-GtllSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV--ITGDSGGNILIWSKGTNRISKQVHAH-DGGVFSLCMLR-D-GTLLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred eEEEEEEEcCCCCE--EeecCCceEEEEeCCCceEEeEeeec-CCceEEEEEec-C-ccEeecCccceEEeccccccccc
Confidence 56899999999996 9999999999999977332 23355 55566666655 4 456679999999999843 4445
Q ss_pred EEecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 140 SLRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 140 ~~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
.+.+|..-- .-...+...+++++.+.+.|..=+++.+-.+ ...+|......++.+|+.+++++++.|+.|++|+ ..
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 566665433 2233445566999999999988788776544 4468999999999999999999999999999999 56
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
+++.+.... .++.|+.|+|. | .+|+|+..|...|.|+.+...+.+... +.+++.+.|+| ++..+++
T Consensus 399 k~~wt~~~~-------d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp---~G~~lAv 464 (626)
T KOG2106|consen 399 KLEWTKIIE-------DPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSP---DGAFLAV 464 (626)
T ss_pred ceeEEEEec-------CceeEeeccCc-c-eEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcC---CCCEEEE
Confidence 666666665 78999999999 8 999999999999999999666655444 78999999998 5667777
Q ss_pred EeCCCEEEEEeCCC-CceeEEec-CCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 299 TTDNHIVRIWDPET-GESMTSIE-PTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 299 ss~Dg~V~IWd~~t-g~~l~~i~-~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
++.|+.|.||-+.. |..+..+. .|.++|+.+.|++|+.+|.+-+-|-.|..| .|+.-+
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~ 524 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSECK 524 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE-ccccCc
Confidence 78899999999985 44444332 234799999999999999999988888888 887643
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=4.6e-20 Score=203.11 Aligned_cols=182 Identities=14% Similarity=0.213 Sum_probs=162.0
Q ss_pred CCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCC
Q 005325 156 SCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 156 s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
++-.++|.+.|.|-+||+.+|....+| ..|..+|+.++....++++++++.+|.+.+||......+..+...
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~----- 534 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG----- 534 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----
Confidence 334678888999999999999988888 579999999999988999999999999999999999888888887
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
.+++++.++.. ...+|++..|-.|.++|+.+.+.+. +.+| +..|++++||| ++..+++++.|++|++||+.
T Consensus 535 --~~~~~iv~hr~-s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh--~nritd~~FS~---DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 535 --SSITGIVYHRV-SDLLAIALDDFSIRVVDVVTRKVVREFWGH--GNRITDMTFSP---DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred --CCcceeeeeeh-hhhhhhhcCceeEEEEEchhhhhhHHhhcc--ccceeeeEeCC---CCcEEEEeecCCcEEEEecc
Confidence 78999999988 8899999999999999999988777 7788 78999999998 44445555679999999999
Q ss_pred CCceeEEecCCCCceeEEEEEcCCCEEEEEeCC-CcEEEEE
Q 005325 312 TGESMTSIEPTAGKINDVCVFKDSGLLLLALDC-SQIPSYF 351 (702)
Q Consensus 312 tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d-~~I~~~~ 351 (702)
++.++-.+.. ..++..+.|+|++.+|+++..| .-|++|.
T Consensus 607 t~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 607 TGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999888 8899999999999999999887 5688885
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=202.27 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=209.7
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce---EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS---LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~---~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
-|...-+.|+|.|+|.+ |+|++.||.|++|+..... -.+..+ + ..+.++..+.++|++++.+++|.+|....
T Consensus 11 aht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~--g--~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDIS--G--ELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCCchhhcc--C--ceeEEEeecccceEEeeccceEEEeeCCC
Confidence 45566899999999998 8888899999999987642 112212 2 22344455567999999999999998763
Q ss_pred ce---EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 137 KH---YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 137 ~~---~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
.. ...++.-..+++++......++.|+.|-.|.+.++.+......+.+|..+|.+|.|+|.+++||+.+.||.|+||
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 22 234444455688888888888888888999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcceeEEecccCCC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeecc
Q 005325 214 DMRMRSSAARINAVAPAG--DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~--~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~ 290 (702)
|+.++.+..++..-.... .....++.++|+|+ |..|++...|+.|.+|+.....+.. +.+..+...+..+.|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-- 242 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-- 242 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC--
Confidence 999998887776653221 11467788999999 8889999999999999999988765 33222244599999999
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
.+.++++++-+|.|-|||+.+... .-....|.+++|.|+.+-+-.....+
T Consensus 243 -nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 243 -NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred -CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecc
Confidence 455555556799999999997221 11245899999999887555444433
No 105
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=4.6e-19 Score=199.38 Aligned_cols=257 Identities=12% Similarity=0.093 Sum_probs=182.2
Q ss_pred EEEEecCCcEEEEcccCC--CCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCC-CCEEEEEEecCCcE
Q 005325 11 MKSTLINGVKMYSLVSQQ--RSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPD-GEFLIVSGIYPPQV 87 (702)
Q Consensus 11 l~~s~~~~Vkiy~vs~g~--~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpD-G~~llatGs~dg~I 87 (702)
+.++..-.+.+|.+.+|+ ..++.|-..+. ..+..--.|...|.+++|+|+ +.+ ||||+.|+.|
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~-------------~~v~~L~gH~~~V~~lafsP~~~~l-LASgS~DgtI 99 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRK-------------PPVIKLKGHTSSILDLQFNPCFSEI-LASGSEDLTI 99 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCC-------------ceEEEEcCCCCCEEEEEEcCCCCCE-EEEEeCCCeE
Confidence 555544557789887762 23444532111 011112257889999999998 555 9999999999
Q ss_pred EEEEcCCce----------EEEeeecCCceEEEEEEcCCCCE-EEEEECCCeEEEEecCCceEE--EecCCCccceEEec
Q 005325 88 KVYELRQLS----------LKFERHLDSEIINFEVLADDYSK-LAFLCADRSISLHAKYGKHYS--LRIPRMGRDMAYNS 154 (702)
Q Consensus 88 ~vwdl~~~~----------~~~~~h~~~~vv~~~~ls~dg~~-Las~s~D~~I~iw~~~g~~~~--~~i~~~~~~l~~~~ 154 (702)
+|||+.+.. ..+..|... +..+.++|++.. |++++.|++|+||++...... +..+....++.|++
T Consensus 100 rIWDi~t~~~~~~~i~~p~~~L~gH~~~--V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp 177 (568)
T PTZ00420 100 RVWEIPHNDESVKEIKDPQCILKGHKKK--ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI 177 (568)
T ss_pred EEEECCCCCccccccccceEEeecCCCc--EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC
Confidence 999997521 134556443 667778888765 478999999999999843222 32333344778887
Q ss_pred CCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEE-----EEcCCCCEEEEEEcCC----eEEEEECCC-CcceeEE
Q 005325 155 WSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVV-----SRSKLHGLIACGGEDG----AVECFDMRM-RSSAARI 224 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l-----~~sp~~~llasgs~DG----~V~iWD~~t-~~~v~~l 224 (702)
.+..+++++.++.|++||+.+++.+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||+++ ..++..+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 77777778889999999999999999999998765433 3458888999888764 799999995 5667666
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
.... +...+......++ |.++++|+.|+.|++|++..+....+.......|+.+++|.|
T Consensus 258 ~ld~----~~~~L~p~~D~~t-g~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 258 SIDN----ASAPLIPHYDEST-GLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred EecC----CccceEEeeeCCC-CCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcc
Confidence 5541 1233334444455 899999999999999999887654444444478999999998
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.3e-19 Score=179.63 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=191.3
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
||--..++...|++|+|+||.|...+...|.- ...+++.+.+++|+.||.. +++|+
T Consensus 36 SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-----------------------~~~~~~PvL~v~Wsddgsk-Vf~g~ 91 (347)
T KOG0647|consen 36 SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-----------------------QQSHDGPVLDVCWSDDGSK-VFSGG 91 (347)
T ss_pred ccccCceEEecccCCceEEEEEecCCcccchh-----------------------hhccCCCeEEEEEccCCce-EEeec
Confidence 44333334588999999999998742555511 1247899999999999988 89999
Q ss_pred cCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCC-CCEEEEEECCCeEEEEecCCc--eEEEecCCCccceEEecCCCc
Q 005325 83 YPPQVKVYELRQLSL-KFERHLDSEIINFEVLADD-YSKLAFLCADRSISLHAKYGK--HYSLRIPRMGRDMAYNSWSCD 158 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~d-g~~Las~s~D~~I~iw~~~g~--~~~~~i~~~~~~l~~~~~s~~ 158 (702)
.|+++++||+.+... .+..| +.++-.+.|+... +..|++++.|.+|++||.... ...+.+|.. +.+..-...-
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~H-d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa~Dv~~pm 168 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAAH-DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYAADVLYPM 168 (347)
T ss_pred cCCceEEEEccCCCeeeeeec-ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eeehhccCce
Confidence 999999999998554 44555 7778888887643 468899999999999999843 334445544 3333334455
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCC----CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC--cceeEEecccCCC-
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQS----PALNVVSRSKLHGLIACGGEDGAVECFDMRMR--SSAARINAVAPAG- 231 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~----~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~--~~v~~l~~~~~~~- 231 (702)
++++..+..|.+|+|+.+.... +.+. -.+.||++.++....+.|+-.|.|.|..+..+ +.-.+|.+|....
T Consensus 169 ~vVata~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence 7888899999999997764321 2222 25889999999988899999999999998876 5566788884321
Q ss_pred --CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEee
Q 005325 232 --DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 232 --~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp 288 (702)
+.-..|++|+|+|. -..|++.++||++.+||-.....+.. ..| ..||++..|+.
T Consensus 247 ~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~ 303 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNR 303 (347)
T ss_pred CCCceEEecceEeecc-cceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecC
Confidence 11246889999998 88999999999999999877665553 455 78999999995
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.8e-19 Score=169.29 Aligned_cols=241 Identities=20% Similarity=0.322 Sum_probs=185.9
Q ss_pred ecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------ceEEEeeecCCceEEEEEEcC---CCCEEEEEEC-
Q 005325 57 QDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------LSLKFERHLDSEIINFEVLAD---DYSKLAFLCA- 125 (702)
Q Consensus 57 qd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------~~~~~~~h~~~~vv~~~~ls~---dg~~Las~s~- 125 (702)
..-.|.++|.|++|||+|+. ||||+.|..|++.-++. ..+.|.-| +..|.+++++.. .+..|++++.
T Consensus 84 r~khhkgsiyc~~ws~~gel-iatgsndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGEL-IATGSNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eccccCccEEEEEecCccCe-EEecCCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCC
Confidence 34467899999999999998 99999999999987765 34566667 777888887743 2345566554
Q ss_pred CCeEEEEecC-CceEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeec-------CCCCeEEEEEcC
Q 005325 126 DRSISLHAKY-GKHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNT-------QSPALNVVSRSK 196 (702)
Q Consensus 126 D~~I~iw~~~-g~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~-------h~~~V~~l~~sp 196 (702)
|..|.+-+-. |.-+.--....+.-++...|+.- +++++.+.+|..||+.-..++.++.. .++.|.++++.|
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 5555555544 33333222334445666677776 45566778899999998888887643 235799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC----eEEE-
Q 005325 197 LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS----YPIR- 271 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~----~~l~- 271 (702)
.|.+|++|..|....+||++.+..++.+..| ...|.|+.|+|. ..+|++++.|..|++-|+... -++.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~ph------sadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~v 314 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPH------SADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMV 314 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCC------ccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEE
Confidence 9999999999999999999999999999888 799999999999 999999999999999999752 2333
Q ss_pred EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 272 VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 272 ~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
+-.| ...+..+.|+| .+-.++.++.|+++.+|-+.
T Consensus 315 v~eh--kdk~i~~rwh~---~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 315 VAEH--KDKAIQCRWHP---QDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEec--cCceEEEEecC---ccceeeeccCcceEEEeccC
Confidence 4566 56788899998 34456667789999999764
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.4e-19 Score=194.01 Aligned_cols=250 Identities=13% Similarity=0.171 Sum_probs=197.2
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
|..|+|+|||.+.+. ||.+-.+|.|.||++.. +...+.++.+..+..++|. ++..|.+.+.
T Consensus 25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~------------- 88 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGL------------- 88 (691)
T ss_pred ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecC-------------
Confidence 889999999999988 89999999999999987 3445555655555555554 3344444444
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
+|.|.-||+.+++....+....+.|++++.+|.+..++.||+||.+.+++...+
T Consensus 89 --------------------------sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 89 --------------------------SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred --------------------------CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 455555888888888888888889999999999999999999998888888777
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc-------CCCCeEEEEEeeccC
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM-------FDSPIVDIKWHQSIN 291 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~-------~~~~I~sl~fsp~~~ 291 (702)
......... -..+.|.+|+|+|+ +..|++|+.||.|++||..++..+++...+ ...-|+++.|..
T Consensus 143 ~I~~~r~l~----rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--- 214 (691)
T KOG2048|consen 143 KITYKRSLM----RQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--- 214 (691)
T ss_pred eEEEEeecc----cccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee---
Confidence 654443333 11589999999999 999999999999999999998876622211 122377888873
Q ss_pred CCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCc
Q 005325 292 TERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSP 364 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsf 364 (702)
++.++++-+-|+|.+||...|.++.++..|.+.|.+++..++...+++++.|++|..|....-+. .|..+
T Consensus 215 -d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~ 284 (691)
T KOG2048|consen 215 -DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVIN 284 (691)
T ss_pred -cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--ceeee
Confidence 55555555799999999999999999999999999999999999999999999999998654433 26544
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=8.3e-21 Score=183.21 Aligned_cols=246 Identities=12% Similarity=0.107 Sum_probs=200.4
Q ss_pred eeeeccc-CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 54 ELIQDLW-FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 54 eliqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
+.|..|+ |.++|.+..+..+-.. .|+++.|-+-+|||.-+........ ...|+..+.|+.|..+|++++.+..++|+
T Consensus 50 dwigtfeghkgavw~~~l~~na~~-aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATR-AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhh-hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhh
Confidence 3466665 8899999999888877 8999999999999987732211111 23478999999999999999999999999
Q ss_pred ecCCce---EEE-ecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC
Q 005325 133 AKYGKH---YSL-RIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG 208 (702)
Q Consensus 133 ~~~g~~---~~~-~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG 208 (702)
+..... ..+ ..+...+.+.|+.....+++++.+++|++||..++..++++.... .|+++.++++|.+|.++. .+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~-gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAY-GS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEec-Cc
Confidence 877321 111 224455688888888889999999999999999999999987655 699999999998877654 58
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE--eeccCCCCeEEEEE
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV--KDHMFDSPIVDIKW 286 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~--~~h~~~~~I~sl~f 286 (702)
.|.+||..+...+..+..+ ..|.+...+|+ ...+++|+.|+.++.||..++..+.. ++| -+||.|+.|
T Consensus 206 sV~Fwdaksf~~lKs~k~P-------~nV~SASL~P~-k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrF 275 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMP-------CNVESASLHPK-KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRF 275 (334)
T ss_pred eeEEeccccccceeeccCc-------cccccccccCC-CceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEE
Confidence 9999999999999999988 78999999999 89999999999999999999987764 666 789999999
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
+| ++..+.+++.||+|+||.+..++..
T Consensus 276 SP---dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 276 SP---DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CC---CCceeeccCCCceEEEEEecCCCch
Confidence 99 4444445557999999998766543
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=187.26 Aligned_cols=252 Identities=17% Similarity=0.284 Sum_probs=177.5
Q ss_pred ccCCCceeEEEECCCCC-EEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 59 LWFETATTKIRETPDGE-FLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~-~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
..+-+.++.+..++-|+ .++|+=+..|.|.||++......+... ...+.-+..+-|.- ..+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~---------------~~~~~~s~~~Pl~t--~~g- 209 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEP---------------GLEVKDSEFRPLFT--FNG- 209 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCc---------------cccccccccCceEE--ecc-
Confidence 34567889999988764 446666778999999987632211111 00111122222221 111
Q ss_pred eEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEE---EEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFL---SSLNTQSPALNVVSRSKLH-GLIACGGEDGAVEC 212 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~---~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~i 212 (702)
....+..+.|.+.... |+++...+.|++|-..+|... .+|.+|+..|-.|+|+|.. ++|++||.||+|+|
T Consensus 210 -----hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 210 -----HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred -----cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 1123446666664333 777778888999988887653 4678899999999999987 89999999999999
Q ss_pred EECCCCc---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---CeEEE-EeeccCCCCeEEEE
Q 005325 213 FDMRMRS---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS---SYPIR-VKDHMFDSPIVDIK 285 (702)
Q Consensus 213 WD~~t~~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs---~~~l~-~~~h~~~~~I~sl~ 285 (702)
||+|++. ++.+ ..| .+.|+.|.|+.. -.+||+|+.||+++|||||+ ++|+. ++-| ..||++|.
T Consensus 285 WDiRs~~~~~~~~~-kAh------~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsie 354 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-KAH------NSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIE 354 (440)
T ss_pred EEecCCCccceeEe-ecc------CCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEE
Confidence 9999873 3333 444 789999999988 66999999999999999996 45666 5666 78999999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCc-----------eeEE-----ecCC--CCceeEEEEEcCC-CEEEEEeCCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGE-----------SMTS-----IEPT--AGKINDVCVFKDS-GLLLLALDCS 345 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~-----------~l~~-----i~~h--~~~I~~v~~~p~~-~~l~~a~~d~ 345 (702)
|+| .....+++++.|..|.|||+..-. -+.. +..| ...|-.|.|++.- ++|++.+-+|
T Consensus 355 W~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 355 WHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 999 567778888899999999985311 0111 2223 4478889999954 5666665555
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=6.1e-20 Score=189.25 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=186.3
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCe
Q 005325 113 LADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPAL 189 (702)
Q Consensus 113 ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V 189 (702)
..+....+++++.|..+.+++.........++++.. .+.+++....+++++.+..|++|.............|..+|
T Consensus 227 ~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V 306 (506)
T KOG0289|consen 227 IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPV 306 (506)
T ss_pred ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccc
Confidence 333357889999999999988774333333444433 56667777778999999999999988888888888999999
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE
Q 005325 190 NVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~ 269 (702)
+.+..+|.+.+|++++.||+..+.|++++.++...... ...-.+++++|+|| |..|++|+.||.|+|||+.++..
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----TSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec----cccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccc
Confidence 99999999999999999999999999999987776653 11467999999999 99999999999999999999876
Q ss_pred EE-EeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecCC-CCceeEEEEEcCCCEEEEEeCCCc
Q 005325 270 IR-VKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEPT-AGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 270 l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~h-~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
+. +.+| .++|+.|+|+- ++++++ +++|+.|++||++..+.+.++... ...|++++|.+.+.+|++++.+-+
T Consensus 382 ~a~Fpgh--t~~vk~i~FsE----NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 382 VAKFPGH--TGPVKAISFSE----NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred cccCCCC--CCceeEEEecc----CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 55 6667 89999999994 555554 568999999999988888877652 236999999999999999977766
Q ss_pred EEEEE
Q 005325 347 IPSYF 351 (702)
Q Consensus 347 I~~~~ 351 (702)
|++|.
T Consensus 456 Vy~~~ 460 (506)
T KOG0289|consen 456 VYICK 460 (506)
T ss_pred EEEEe
Confidence 66654
No 112
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=6.6e-20 Score=190.29 Aligned_cols=281 Identities=13% Similarity=0.162 Sum_probs=205.4
Q ss_pred CCCceeEEEECCCCC-EEEEEEecCCcEEEEEcCC------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005325 61 FETATTKIRETPDGE-FLIVSGIYPPQVKVYELRQ------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHA 133 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~-~llatGs~dg~I~vwdl~~------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~ 133 (702)
++..|+|++|+|... .++|+|...|+|-+||+.. ....|..| ..+|..+.+.+.+-..+++.+.||+|++-+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCChhheeeeccCceeeeee
Confidence 578899999999877 7799999999999999952 44566666 444555555556678899999999999998
Q ss_pred cCCceEEEecCC-Ccc----ceEEecCCCcEEEEecCCCEEEEECCCCeE-EEEeecCCCCeEEEEEcCCC-CEEEEEEc
Q 005325 134 KYGKHYSLRIPR-MGR----DMAYNSWSCDLLCAASSPELYRINLEQGRF-LSSLNTQSPALNVVSRSKLH-GLIACGGE 206 (702)
Q Consensus 134 ~~g~~~~~~i~~-~~~----~l~~~~~s~~llv~s~d~~V~vwdl~~g~~-~~~l~~h~~~V~~l~~sp~~-~llasgs~ 206 (702)
..+.....-+.. ... .+.+...+..++++..-|...+||+.++.. ...+..|...|++|+++|.. .+||||+.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 875433321111 111 334444555588888888899999988754 66778899999999999988 78999999
Q ss_pred CCeEEEEECCCCcceeE--EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC----CCeEEEEeeccCCC-
Q 005325 207 DGAVECFDMRMRSSAAR--INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR----SSYPIRVKDHMFDS- 279 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~--l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr----s~~~l~~~~h~~~~- 279 (702)
|++++|||+|.-..-.. +. ...|...|.+..|||. +..|++.+.|..|+|||.. .-.|+.+..|.+..
T Consensus 344 D~T~kIWD~R~l~~K~sp~ls----t~~HrrsV~sAyFSPs-~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLS----TLPHRRSVNSAYFSPS-GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred CcceeeeehhhhcCCCCccee----cccccceeeeeEEcCC-CCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence 99999999996332221 21 1245799999999999 6669999999999999984 34455566664322
Q ss_pred ---CeEEEEEeeccCCCCCeEEE-eCCCEEEEEeCCCCceeEEecCC-CCceeE-EEEEcCCC-EEEEEeCCCcEEEEE
Q 005325 280 ---PIVDIKWHQSINTERPKLIT-TDNHIVRIWDPETGESMTSIEPT-AGKIND-VCVFKDSG-LLLLALDCSQIPSYF 351 (702)
Q Consensus 280 ---~I~sl~fsp~~~~~~~ll~s-s~Dg~V~IWd~~tg~~l~~i~~h-~~~I~~-v~~~p~~~-~l~~a~~d~~I~~~~ 351 (702)
.+....|.| +..+++. .--.-|-|+|...++.+..+... ...|.+ ..|+|-.. +++.++..|.|++|.
T Consensus 419 RwlT~fKA~W~P----~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTPFKAAWDP----DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccchhheeCC----CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 345678998 4445544 45777999999988877775432 235554 56899666 555566778888775
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=201.53 Aligned_cols=233 Identities=15% Similarity=0.162 Sum_probs=193.3
Q ss_pred CCCCEEEEEECCCeEEEEecCCce------EEEecCCC---ccceEEecCCCcEEEEecCCCEEEEECCCC--eEEEEee
Q 005325 115 DDYSKLAFLCADRSISLHAKYGKH------YSLRIPRM---GRDMAYNSWSCDLLCAASSPELYRINLEQG--RFLSSLN 183 (702)
Q Consensus 115 ~dg~~Las~s~D~~I~iw~~~g~~------~~~~i~~~---~~~l~~~~~s~~llv~s~d~~V~vwdl~~g--~~~~~l~ 183 (702)
+.+++|.+++.|+.|++|+..... +...+..+ ..+++....+..++++++|-+|.+|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 566789999999999999876221 12222222 226677777778999999999999999887 6778899
Q ss_pred cCCCCeEEEEE-cCCCCEEEEEEcCCeEEEEECCCC--cceeEEeccc---CCCCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 005325 184 TQSPALNVVSR-SKLHGLIACGGEDGAVECFDMRMR--SSAARINAVA---PAGDADQEVTALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 184 ~h~~~V~~l~~-sp~~~llasgs~DG~V~iWD~~t~--~~v~~l~~~~---~~~~~~~~Vtslafspd~g~~LasGs~DG 257 (702)
.|.+.|.||++ .++..++|+|+-|+.|.+||+.++ +.+.++.... ...++..+|++++.++. |..|++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-ceEEEecCccc
Confidence 99999999999 788899999999999999999987 3444443321 11256789999999999 99999999999
Q ss_pred eEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC
Q 005325 258 KVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 258 ~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~ 336 (702)
.|++||.++.+.+. +.+| ...|..|..++ ++..++++++|++|++||+....++.++..|...|+++..+|.-.
T Consensus 194 ~lr~wDprt~~kimkLrGH--TdNVr~ll~~d---DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGH--TDNVRVLLVND---DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred ceEEeccccccceeeeecc--ccceEEEEEcC---CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 99999999987655 8888 78999999996 677888888999999999999999999999999999999999989
Q ss_pred EEEEEeCCCcEEEEEcC
Q 005325 337 LLLLALDCSQIPSYFIP 353 (702)
Q Consensus 337 ~l~~a~~d~~I~~~~ip 353 (702)
.+++|+.++.|..-.+.
T Consensus 269 ~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEEecCCCCcEEecccC
Confidence 99999999988765443
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.1e-20 Score=204.39 Aligned_cols=278 Identities=14% Similarity=0.161 Sum_probs=210.5
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----ceEEEe--e--ecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----LSLKFE--R--HLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----~~~~~~--~--h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
.....+.|...++-..|+++| ...++||.+.. ..+.+. . .......++.|-.-+.++||+++..|.|.+|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccccceEeecCCcceeEEec--ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 356678888889888855555 34677887765 122111 1 0011123344545566889999999999999
Q ss_pred ecCCc--e-EEEecCC---CccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEE
Q 005325 133 AKYGK--H-YSLRIPR---MGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACG 204 (702)
Q Consensus 133 ~~~g~--~-~~~~i~~---~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasg 204 (702)
|+... . ..+.+.. ....+.|++..+. |++|+.|+.|.+||+....-..++.+.+..|..|.|+|.. +.|+++
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 98842 1 1112222 3337888888877 6778889999999999999888898999999999999865 899999
Q ss_pred EcCCeEEEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE--EEEeeccCCCCe
Q 005325 205 GEDGAVECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP--IRVKDHMFDSPI 281 (702)
Q Consensus 205 s~DG~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~--l~~~~h~~~~~I 281 (702)
.+.|.|.+||+|.. ++...+..| .++|.|+.|+|+ +.+||+|+.|+.|+|||..++++ +.+... ..||
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH------~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv 266 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAH------NGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPV 266 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcc------cCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEee--ccee
Confidence 99999999999954 566777777 899999999998 99999999999999999987654 333333 6899
Q ss_pred EEEEEeeccCCCCCeEEEe---CCCEEEEEeCCC-CceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEc
Q 005325 282 VDIKWHQSINTERPKLITT---DNHIVRIWDPET-GESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss---~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~i 352 (702)
.++.|-| ...+.|+++ .|-.|+|||++- .-+..++..|...++.++|-. +...+++++.|+.+....+
T Consensus 267 ~rVkWRP---~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 267 GRVKWRP---ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeeeecc---CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 9999999 334555544 499999999985 457788899999999999976 5567889999998765543
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=5.8e-18 Score=177.55 Aligned_cols=263 Identities=15% Similarity=0.100 Sum_probs=189.3
Q ss_pred EEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEEEecC--CCccceE
Q 005325 77 LIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHYSLRIP--RMGRDMA 151 (702)
Q Consensus 77 llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~~~i~--~~~~~l~ 151 (702)
++++++.|+.|.+||+.+... .+..+ .. +..+.+++++..+ ++++.++.|.+|+.........++ .....+.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVG-QR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECC-CC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 488999999999999977433 33333 22 2346678898877 566778999999987432222222 2334666
Q ss_pred EecCCCcEEEEe-cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC-eEEEEECCCCcceeEEecccC
Q 005325 152 YNSWSCDLLCAA-SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG-AVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 152 ~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG-~V~iWD~~t~~~v~~l~~~~~ 229 (702)
+++....+++++ .++.|++||+.+++.+..+..+ ..+.+++|+|++.++++++.++ .+.+||..++..+..+...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-- 156 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-- 156 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--
Confidence 777666676654 4788999999998888777543 3468899999999999988865 5678899888776655443
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEEee-cc-----CCCCeEEEEEeeccCCCCCeEEE-eC
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRVKD-HM-----FDSPIVDIKWHQSINTERPKLIT-TD 301 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~~~-h~-----~~~~I~sl~fsp~~~~~~~ll~s-s~ 301 (702)
..+.+++|+|+ +.+|+++ ..++.|.+||+.+++.+.... +. .......++|+| ++..++++ +.
T Consensus 157 -----~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~---dg~~~~~~~~~ 227 (300)
T TIGR03866 157 -----QRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK---DGKTAFVALGP 227 (300)
T ss_pred -----CCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC---CCCEEEEEcCC
Confidence 45678999999 8877554 469999999999987655221 11 111235688997 34443443 45
Q ss_pred CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEe-CCCcEEEEEcCCC
Q 005325 302 NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLAL-DCSQIPSYFIPDL 355 (702)
Q Consensus 302 Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ip~l 355 (702)
++.|.+||+.+++.+..+.. ...+.+++|+|++..|++++ .++.|.+|.+-..
T Consensus 228 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 77899999999888766643 56899999999999888864 6899999987653
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.7e-19 Score=175.93 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=190.9
Q ss_pred ceeeeeccc---CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCC--EEEEEE
Q 005325 52 RVELIQDLW---FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYS--KLAFLC 124 (702)
Q Consensus 52 rieliqd~~---~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~--~Las~s 124 (702)
...|.+.|. |..+++|+++ +|.| +|+|+.|-+|+|||+.... -.+..|.+. +.++.|.++-+ .|++|+
T Consensus 30 ~~~l~~lF~~~aH~~sitavAV--s~~~-~aSGssDetI~IYDm~k~~qlg~ll~Hags--itaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAV--SGPY-VASGSSDETIHIYDMRKRKQLGILLSHAGS--ITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred ceeeeccccccccccceeEEEe--ccee-EeccCCCCcEEEEeccchhhhcceeccccc--eEEEEecCCcchhheeeec
Confidence 345666665 4578888888 4788 9999999999999998822 244455333 56666665544 899999
Q ss_pred CCCeEEEEecCCc--eEEEecC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE
Q 005325 125 ADRSISLHAKYGK--HYSLRIP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI 201 (702)
Q Consensus 125 ~D~~I~iw~~~g~--~~~~~i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll 201 (702)
.||.|.+|+...- ...++.+ ....++..+|.+.-.++.+.|..+..||+-+|+.-..+.... ..+.|.|+|.|..+
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHF 183 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEE
Confidence 9999999998742 2222222 223488888888888999999999999999998655444332 23448999999988
Q ss_pred EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCC
Q 005325 202 ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSP 280 (702)
Q Consensus 202 asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~ 280 (702)
+.++. ..|-+|.+.+......+..+ ..+.|+.|. ++..|++|..|+.|.+||..+..|+. +..| ...
T Consensus 184 ~v~~~-~~i~i~q~d~A~v~~~i~~~-------~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~R 251 (362)
T KOG0294|consen 184 VVSGR-NKIDIYQLDNASVFREIENP-------KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENR 251 (362)
T ss_pred EEEec-cEEEEEecccHhHhhhhhcc-------ccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecc--hhh
Confidence 88877 47999999987766666554 567788887 36899999999999999999988877 6788 789
Q ss_pred eEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC-----ceeEEecCCCCceeEEE
Q 005325 281 IVDIKWHQSINTERPKLITTDNHIVRIWDPETG-----ESMTSIEPTAGKINDVC 330 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg-----~~l~~i~~h~~~I~~v~ 330 (702)
|.++.+.-. ..+.++++.++||.|+|||++.. +++..+.. ...++|+.
T Consensus 252 VK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~ 304 (362)
T KOG0294|consen 252 VKDIASYTN-PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR 304 (362)
T ss_pred eeeeEEEec-CCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence 999996531 12234555668999999999865 45555554 55555554
No 117
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-19 Score=187.62 Aligned_cols=288 Identities=10% Similarity=0.076 Sum_probs=215.8
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+..++...+||+|+++.- ...|.++. ..-+..+.+++|+.....++|+.+.|..|++
T Consensus 5 l~~aS~gd~~kl~D~s~~-~~~~~~~~----------------------~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~ 61 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDL-ETKSEYVH----------------------QTAEPGDFSFNWQRRNFLVVASMAGDKVMRI 61 (673)
T ss_pred eeeeccCCceEEeecccc-cCcccccc----------------------CCCCCcceeeeccccceEEEeecCCceeEEE
Confidence 567788889999999987 44444442 1123348899999887766777778889999
Q ss_pred EEcCCc--eE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCc----cceEEecCCCcE
Q 005325 90 YELRQL--SL----KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMG----RDMAYNSWSCDL 159 (702)
Q Consensus 90 wdl~~~--~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~----~~l~~~~~s~~l 159 (702)
|.-... .. +..+. ....+.+..+| .++++++..++|+||+...... .+.++.+ .++.|+...+.|
T Consensus 62 ~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~-hr~lkdh~stvt~v~YN~~Deyi 136 (673)
T KOG4378|consen 62 KEKDGKTPEVPRVRKLTGD-NAFCVACASQS---LYEISGGQSGCVKIWDLRAKLI-HRFLKDHQSTVTYVDYNNTDEYI 136 (673)
T ss_pred ecccCCCCccceeeccccc-hHHHHhhhhcc---eeeeccCcCceeeehhhHHHHH-hhhccCCcceeEEEEecCCccee
Confidence 976552 11 22222 22222333333 8899999999999999983221 2222222 267777777779
Q ss_pred EEEecCCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
++++.+|.|.+.++.++....+|....+ .|.-+.++|.. .+|.+++.+|.|.+||+....++..+... |..+.
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~-----HsAP~ 211 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA-----HSAPC 211 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-----ccCCc
Confidence 9999999999999999998888876644 45688999987 67888999999999999988877665544 47899
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-Ccee
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESM 316 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l 316 (702)
..|||+|.+..+|++.+.|..|.+||+++.+...... |..|...++|.| ++..|+++...|.|..||++. ..++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~---~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSE---CGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecC---CceEEEeecCCceEEEEecccCCCCc
Confidence 9999999978899999999999999999766544222 245999999997 344444555799999999985 5789
Q ss_pred EEecCCCCceeEEEEEcCC
Q 005325 317 TSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 317 ~~i~~h~~~I~~v~~~p~~ 335 (702)
..+..|...|++|+|-|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 9999999999999998864
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=9.1e-19 Score=170.84 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=191.2
Q ss_pred EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec-CCceEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECC
Q 005325 98 KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK-YGKHYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLE 174 (702)
Q Consensus 98 ~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~-~g~~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~ 174 (702)
.+.+|.. ++..+-+..+|..|.+|+.|.++.+|-. .|...-+-..+.+. ++.....+..+++++.|.++.+||++
T Consensus 5 ~l~GHER--plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHER--PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCcc--ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 3445533 3666778889999999999999999955 56544433333332 55555666679999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEECC-------CCcceeEEecccCCCCCCCCeEEEEE
Q 005325 175 QGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-----DGAVECFDMR-------MRSSAARINAVAPAGDADQEVTALEF 242 (702)
Q Consensus 175 ~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-----DG~V~iWD~~-------t~~~v~~l~~~~~~~~~~~~Vtslaf 242 (702)
+|+.+..+.... +|..+.|++.+++++.+++ .+.|.++|++ +..++..+..+ ...++.+-|
T Consensus 83 tGk~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------~skit~a~W 155 (327)
T KOG0643|consen 83 TGKQLATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------DSKITSALW 155 (327)
T ss_pred CCcEEEEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC------ccceeeeee
Confidence 999999987765 7999999999999888776 3779999998 44567777777 689999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC
Q 005325 243 DSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 243 spd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h 322 (702)
.|- +.+|++|..||.|.+||++++..+.-....+...|+.|+++| +..++++++.|.+-++||..+..++.++..
T Consensus 156 g~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~---d~T~FiT~s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 156 GPL-GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR---DRTYFITGSKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred ccc-CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC---CcceEEecccCccceeeeccceeeEEEeee-
Confidence 999 999999999999999999999776633222377999999998 667777778899999999999999999988
Q ss_pred CCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 323 AGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 323 ~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
..+||+.+++|....++.++...-+
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccceecccccceEEecCCceee
Confidence 8899999999987777777655433
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=180.30 Aligned_cols=274 Identities=12% Similarity=0.166 Sum_probs=213.9
Q ss_pred eeeeccc-CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEE
Q 005325 54 ELIQDLW-FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSIS 130 (702)
Q Consensus 54 eliqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~ 130 (702)
.|...|+ |...|..++...... |+.|++.|.+.+||.+.+ .-.++.+|..+ +..+.|++.+..+++++.|++..
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLATYTGHTGS--VNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceeeecccccc--eeeEEeccccceEEEccCCcchH
Confidence 3444443 677788777665555 599999999999999998 44588999887 88888999999999999999999
Q ss_pred EEecCCceEEEecCC-----Ccc---ceEEe-cCCCcEE-EEecCC-CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC
Q 005325 131 LHAKYGKHYSLRIPR-----MGR---DMAYN-SWSCDLL-CAASSP-ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 131 iw~~~g~~~~~~i~~-----~~~---~l~~~-~~s~~ll-v~s~d~-~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ 199 (702)
||...-.. ..|. .+. .+..+ ....+.- ...+|+ .|. .++..|.+|...|.|+.|...+.
T Consensus 216 IW~~av~~---~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 216 IWKAAVNW---EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred HHHHhhcC---cCCCCCCCCCCCchhhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcc
Confidence 99632110 1111 000 00000 0011100 001111 121 24567889999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccC
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMF 277 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~ 277 (702)
.+++++.|.+..+||+.++..+..+.+| ....+.++-+|. ..++++.+.|-+.++||.|..-+-. +.+|
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGH------d~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-- 356 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGH------DSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-- 356 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCc------chhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeeccc--
Confidence 9999999999999999999999999998 789999999999 8899999999999999999644322 6677
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
...|+++.|.. +..++.+++|.+|+|||+++ -.++.+|.. .+++|.++.+....+|++--++.+|.+|.+..
T Consensus 357 tdtVTS~vF~~----dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 357 TDTVTSVVFNT----DDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ccceeEEEEec----CCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 78999999985 77888899999999999987 468889988 89999999999999999999999999998754
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6e-19 Score=175.60 Aligned_cols=232 Identities=16% Similarity=0.178 Sum_probs=183.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecC
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQ 185 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h 185 (702)
++.+.+++..+.|+.++.|+++++|+.........+...+. +.+|.. ...+++++.++.|.++|+.++... .+..|
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth 93 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTH 93 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccC
Confidence 45555668888899999999999999886544433332222 333333 345899999999999999998754 45689
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
..+|.||..++..+.+++|+.|++|++||+|....+.++... ..|.|+..+ |..|++|+.+..|.+||+|
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-------kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-------KKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-------ceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 999999999999999999999999999999987777777766 689999987 7799999999999999999
Q ss_pred CCe-EEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC----ceeEEecCCCC---------ceeEEEE
Q 005325 266 SSY-PIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG----ESMTSIEPTAG---------KINDVCV 331 (702)
Q Consensus 266 s~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg----~~l~~i~~h~~---------~I~~v~~ 331 (702)
+.. +.+.........+.+|++.| +.+-+++++-+|.|.+=.++.. ..-..+..|.. +||+|+|
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~p---n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVP---NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred cccchhhhccccceeEEEEEEEec---CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 855 44333333356899999998 5777888888999888666544 33345555532 8999999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|-.+.|++|+.||.|.+|.+-.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred ccccceEEecCCCceEEEccCcc
Confidence 99999999999999999997643
No 121
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=3.8e-19 Score=201.92 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=195.5
Q ss_pred eeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--------------------ceEEEeeecCCceEEEEEEc
Q 005325 55 LIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--------------------LSLKFERHLDSEIINFEVLA 114 (702)
Q Consensus 55 liqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--------------------~~~~~~~h~~~~vv~~~~ls 114 (702)
|-+--.|.+.|+|+.|||||+| ||+|+.|..|.||+... ....+.+| +..|.+++ ++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~-lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~-Ws 138 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSY-LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVN-WS 138 (942)
T ss_pred heeeccccCceeEEEECCCCCe-EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceec-cC
Confidence 4455578999999999999999 99999999999999872 12345566 66677776 56
Q ss_pred CCCCEEEEEECCCeEEEEecCCceEE--EecC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----
Q 005325 115 DDYSKLAFLCADRSISLHAKYGKHYS--LRIP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS----- 186 (702)
Q Consensus 115 ~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~----- 186 (702)
|++.+|++++.|++|.||+...-... ++.+ .....+.|.|.+..+++-+.|.+|.+|++.+....+.+..+.
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 68899999999999999988743222 2222 233489999999999999999999999988777777665543
Q ss_pred -CCeEEEEEcCCCCEEEEEEc----CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC----CCC---------
Q 005325 187 -PALNVVSRSKLHGLIACGGE----DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN----GGF--------- 248 (702)
Q Consensus 187 -~~V~~l~~sp~~~llasgs~----DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd----~g~--------- 248 (702)
..+.-+.|+|+|.+|++... -.++.|.+-.+.+.-..|-+| ..+++++.|+|. +..
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH------~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH------SAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC------CCceEEEEeChHHhccccccCCccCCCc
Confidence 25778999999999998754 346788887777777777777 789999999982 011
Q ss_pred ---EEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 249 ---LMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 249 ---~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
.+|+|+.|++|.||.....+|+.+.-+....+|..++|+| ++-.|++++-||+|.+.....
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp---dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP---DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC---CCCeEEEEecCCeEEEEEcch
Confidence 6889999999999999999999866666678999999998 555666777899999999875
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3e-19 Score=185.66 Aligned_cols=241 Identities=14% Similarity=0.118 Sum_probs=200.7
Q ss_pred EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEE---------------ecCC-Cc----cceEEecCCC
Q 005325 99 FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSL---------------RIPR-MG----RDMAYNSWSC 157 (702)
Q Consensus 99 ~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~---------------~i~~-~~----~~l~~~~~s~ 157 (702)
+..|.-+ +.++++++|..+.++++.+++|.-|++. |..... ..+. .+ .+++..+.+.
T Consensus 138 ~~~H~~s--~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 138 IGKHQLS--VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eccccCc--ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3445444 6778899999999999999999999877 321111 1111 11 1566666666
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
.+++++.+..|.+|+..+.+.++.+.+|.+.|.+++|-...+-|++++.|.+|++|++.....+.++-.| ...|
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH------qd~v 289 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH------QDGV 289 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC------ccce
Confidence 7899999999999999999999999999999999999877789999999999999999988888888887 7999
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeE
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMT 317 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~ 317 (702)
.+|....- +..+.+|+.|.+++||++.....+.+.+| ...|-|++|. ++.++++++++|.|.+|++...+++.
T Consensus 290 ~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~--~~sidcv~~I----n~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 290 LGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGG--EGSIDCVAFI----NDEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred eeechhcc-cceEEeccccceeEEEeccccceeeeeCC--CCCeeeEEEe----cccceeeccCCceEEEeeecccCcee
Confidence 99998877 88888999999999999976666667777 6789999998 48899999999999999999888877
Q ss_pred Eec-CC-----------CCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 318 SIE-PT-----------AGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 318 ~i~-~h-----------~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.. +| +.+|++++..|.+.++++++.+|.|.+|.+..
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 642 22 23899999999999999999999999998754
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.2e-19 Score=184.26 Aligned_cols=265 Identities=17% Similarity=0.147 Sum_probs=200.9
Q ss_pred EEEEecCCc-EEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecCCc---eEEEecCCCccce
Q 005325 78 IVSGIYPPQ-VKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKYGK---HYSLRIPRMGRDM 150 (702)
Q Consensus 78 latGs~dg~-I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g~---~~~~~i~~~~~~l 150 (702)
+.+++.|+. +.+||+.+ ..+.|.+........+..+.+ .+++++.. -..|.+|..... .....+|....++
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 445555554 89999998 334454442222233344444 55665554 447888987632 2334556666677
Q ss_pred EEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC---------Ccce
Q 005325 151 AYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM---------RSSA 221 (702)
Q Consensus 151 ~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t---------~~~v 221 (702)
...+....|+.++-.+.||+|.+.+|..+..+..|-..|+|+.|+-++.+|+||+.||.|.+|++.. -.++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 7666665566666999999999999999999999999999999999999999999999999998742 2345
Q ss_pred eEEecccCCCCCCCCeEEEEEcCC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 222 ARINAVAPAGDADQEVTALEFDSN-GGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd-~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
+.+..| .-+|+.+...+. -...|++.+.|.+|++||+..+..+..... ..+|++++..| .+..+.+++
T Consensus 168 ~~f~~H------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDp---ae~~~yiGt 236 (476)
T KOG0646|consen 168 HIFSDH------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDP---AERVVYIGT 236 (476)
T ss_pred eeeccC------cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcc---cccEEEecC
Confidence 555555 899999998765 135799999999999999999988875554 57999999998 345566777
Q ss_pred CCCEEEEEeCCCC----------------ceeEEecCCCC--ceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 301 DNHIVRIWDPETG----------------ESMTSIEPTAG--KINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 301 ~Dg~V~IWd~~tg----------------~~l~~i~~h~~--~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.+|.|.+.++... ..+..+.+|.. .|+|++.+-++.+|++|+.|+++.+|.+-+.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 8999999887532 23455677887 9999999999999999999999999987653
No 124
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-19 Score=191.93 Aligned_cols=240 Identities=15% Similarity=0.262 Sum_probs=187.7
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP 144 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~ 144 (702)
.+-+.||..+.. |+|. ...|.+|+..+.........+..-++.+.++++|.+|+.+..+|.|.|
T Consensus 180 ~nlldWss~n~l--aVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~i------------- 243 (484)
T KOG0305|consen 180 LNLLDWSSANVL--AVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQI------------- 243 (484)
T ss_pred hhHhhcccCCeE--EEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEE-------------
Confidence 355778855543 4443 357999998875533332222334677778888888888888887777
Q ss_pred CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE
Q 005325 145 RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR 223 (702)
Q Consensus 145 ~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~ 223 (702)
||..+.+.+..+.. |...|-|++|+ ...+.+|+.|+.|..+|++..+.+..
T Consensus 244 --------------------------wD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 244 --------------------------WDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred --------------------------EehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 55555566666777 99999999999 66899999999999999998876655
Q ss_pred -EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-
Q 005325 224 -INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT- 300 (702)
Q Consensus 224 -l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss- 300 (702)
+..| ...|..+.|+++ +.+||+|+.|+.|.|||.....|+. +..| ...|..++|+| ...+.|++++
T Consensus 296 ~~~~H------~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H--~aAVKA~awcP--~q~~lLAsGGG 364 (484)
T KOG0305|consen 296 TLQGH------RQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEH--TAAVKALAWCP--WQSGLLATGGG 364 (484)
T ss_pred hhhcc------cceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEecc--ceeeeEeeeCC--CccCceEEcCC
Confidence 5555 799999999999 9999999999999999998777665 6777 78999999999 3344444443
Q ss_pred -CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEe--CCCcEEEEEcCCCCCCCC
Q 005325 301 -DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLAL--DCSQIPSYFIPDLGPTPK 360 (702)
Q Consensus 301 -~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~--~d~~I~~~~ip~lg~ap~ 360 (702)
.|++|++||+.+|..+..+.. .+.|..|.|++...-|+++. .+..|.+|..|++.+.-.
T Consensus 365 s~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 365 SADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred CcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 499999999999999999988 88999999999887666653 456899999999765433
No 125
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=201.28 Aligned_cols=238 Identities=16% Similarity=0.137 Sum_probs=175.6
Q ss_pred eecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce-EEEecCC------------CccceEEec--CC-Cc--EEEE
Q 005325 101 RHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH-YSLRIPR------------MGRDMAYNS--WS-CD--LLCA 162 (702)
Q Consensus 101 ~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~-~~~~i~~------------~~~~l~~~~--~s-~~--llv~ 162 (702)
.|.++ +.++-||+||.+||+++.|+.|+||.+.... ....... ....+.... .. .. .-.+
T Consensus 265 ah~ga--Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGA--IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCc--EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 55444 7777799999999999999999999776411 1110000 000000000 00 00 0001
Q ss_pred ecCCCEEEEECC----CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 163 ASSPELYRINLE----QGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 163 s~d~~V~vwdl~----~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
..... .++++. ..+++..|.+|.+.|..|.|+. .++|++++.|.||+||++....|+.+|... ..||
T Consensus 343 ~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-------dfVT 413 (712)
T KOG0283|consen 343 SQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHN-------DFVT 413 (712)
T ss_pred cCCcc-ccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecC-------CeeE
Confidence 11111 122222 2245677899999999999995 468999999999999999999999999866 8999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEE
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTS 318 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~ 318 (702)
||+|+|-+.++|++|+-||.|+||+|...+.+...+. ..-|++++|.| ++...|+|+-+|.+++|++...++...
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~P---dGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSP---DGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEecc---CCceEEEEEeccEEEEEEccCCeEEEe
Confidence 9999998799999999999999999999888776665 46899999999 677788888999999999998777665
Q ss_pred ecC--C------CCceeEEEEEcCC-CEEEEEeCCCcEEEEEcCC
Q 005325 319 IEP--T------AGKINDVCVFKDS-GLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 319 i~~--h------~~~I~~v~~~p~~-~~l~~a~~d~~I~~~~ip~ 354 (702)
... | ...|+.+.|.|.. ..+++.+.|.+|++|..-.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 432 1 2279999999844 4689999999999999843
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.3e-19 Score=186.93 Aligned_cols=274 Identities=14% Similarity=0.184 Sum_probs=208.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCC-EEEEEECCCeEE---------
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYS-KLAFLCADRSIS--------- 130 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~-~Las~s~D~~I~--------- 130 (702)
|.+.|.||.+.|.|.+ ||+|+.||+|+||.+.+..+......++.|.+ +.|+|.+. .++.+.....+.
T Consensus 399 Htg~Vr~iSvdp~G~w-lasGsdDGtvriWEi~TgRcvr~~~~d~~I~~-vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEW-LASGSDDGTVRIWEIATGRCVRTVQFDSEIRS-VAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred cCCeEEEEEecCCcce-eeecCCCCcEEEEEeecceEEEEEeecceeEE-EEecCCCCceeEEEEecCceEEeCccccch
Confidence 5678999999999999 99999999999999999666555555664444 44454433 223333333333
Q ss_pred ------------------------EEecC-------CceEEEecCCCccceEEecCCCcEEEEecCC---CEEEEECCCC
Q 005325 131 ------------------------LHAKY-------GKHYSLRIPRMGRDMAYNSWSCDLLCAASSP---ELYRINLEQG 176 (702)
Q Consensus 131 ------------------------iw~~~-------g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~---~V~vwdl~~g 176 (702)
.|... |.+..+..++..+.+.++..+..|.++..++ .|.+.++...
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 33221 1233444556666788888777776665543 4888999888
Q ss_pred eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 177 RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
+...+|....+.|.++.|+|...+|++++. ..|+|||+.....+..+... ...|.+++.+|. |..|++|+.|
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg------~kwiS~msihp~-GDnli~gs~d 628 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG------SKWISSMSIHPN-GDNLILGSYD 628 (733)
T ss_pred cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC------CeeeeeeeecCC-CCeEEEecCC
Confidence 877888777778999999999999998887 78999999988887777766 578999999999 9999999999
Q ss_pred CeEEEEEcCC-CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC---------CceeEEecCCCC
Q 005325 257 GKVLIYDLRS-SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET---------GESMTSIEPTAG 324 (702)
Q Consensus 257 G~V~lwDlrs-~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t---------g~~l~~i~~h~~ 324 (702)
+.+..||+.- .+|.. +.-| ...|++++||+ .-.|++++ +|+++.|+.-.- --++..+.+|..
T Consensus 629 ~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~----ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHK----RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred CeeEEEEcccCcchhHHhhhh--hhhhhhhhhcc----ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999999985 45666 4555 77999999997 44566655 689999986431 124567788866
Q ss_pred c----eeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 325 K----INDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 325 ~----I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
. |.+++|||....|++++.++.|.+|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999987
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=7.6e-19 Score=190.32 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=181.7
Q ss_pred CceeE-EEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 63 TATTK-IRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 63 ~~v~~-i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
+.+.+ +++-+..+..+++|+.|..|.+|.+.+ ....+.+|... ++++....++. +++++.|.++++|......+
T Consensus 58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~ 134 (745)
T KOG0301|consen 58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--VCSLSIGEDGT-LISGSWDSTAKVWRIGELVY 134 (745)
T ss_pred ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc--eeeeecCCcCc-eEecccccceEEecchhhhc
Confidence 33444 677654454589999999999999988 44567788444 55555555655 89999999999998876555
Q ss_pred EEecCCC-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 140 SLRIPRM-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 140 ~~~i~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
.+.-+.. ...+...+.+ .+++++.|..|++|.- ++.+++|.+|.+.|..+++-|+. -|++|+.||.|++|++ ++
T Consensus 135 ~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cC
Confidence 5332222 2256666665 7899999999999985 78899999999999999999764 5788999999999999 78
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
.++..+..| ..-|++++..++ +..+++++.|++++||+.. .+.....|. +..|+++.+.+ ++.+++
T Consensus 210 e~l~~~~gh------tn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~----NgDIvv 275 (745)
T KOG0301|consen 210 EVLLEMHGH------TNFVYSISMALS-DGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLL----NGDIVV 275 (745)
T ss_pred ceeeeeecc------ceEEEEEEecCC-CCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEee----CCCEEE
Confidence 888888888 789999997777 7899999999999999987 555555563 45899999986 889999
Q ss_pred EeCCCEEEEEeCC
Q 005325 299 TTDNHIVRIWDPE 311 (702)
Q Consensus 299 ss~Dg~V~IWd~~ 311 (702)
+|+||.|+||...
T Consensus 276 g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 276 GGSDGRVRVFTVD 288 (745)
T ss_pred eccCceEEEEEec
Confidence 9999999999886
No 128
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=3.9e-19 Score=176.29 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=215.9
Q ss_pred CccCCCcceEEEEecCCcEEEEcccC-CCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQ-QRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIV 79 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g-~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~lla 79 (702)
.|+||+ |+-+.+.+-.|||.+|..- .++.|.-+ .. .+.+.+--+|..| +|-..|+++.|+|.... |+
T Consensus 120 fs~DG~-lvATGsaD~SIKildvermlaks~~~em--------~~-~~~qa~hPvIRTlYDH~devn~l~FHPre~I-Li 188 (430)
T KOG0640|consen 120 FSPDGS-LVATGSADASIKILDVERMLAKSKPKEM--------IS-GDTQARHPVIRTLYDHVDEVNDLDFHPRETI-LI 188 (430)
T ss_pred eCCCCc-EEEccCCcceEEEeehhhhhhhcchhhh--------cc-CCcccCCceEeehhhccCcccceeecchhhe-EE
Confidence 478988 4455677888999999743 12222222 11 1223333455554 79999999999999887 99
Q ss_pred EEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecCCCc-----cceE
Q 005325 80 SGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIPRMG-----RDMA 151 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~~~~-----~~l~ 151 (702)
+|+.|++|++||+...+. .|.--.+.+++..+.|+|.|.+|+.+..-.++++|++.. .++....|... .++.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 999999999999988433 233344667789999999999999999999999999884 33333334322 2666
Q ss_pred EecCCCcEEEEecCCCEEEEECCCCeEEEEee-cCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQGRFLSSLN-TQS-PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~-~h~-~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
|.+...-.++++.||.|.+||--+++++.++. .|. ..|.+..|..++.+|++.+.|.+|++|.+.++.++..+.+...
T Consensus 269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence 66666667889999999999999999998884 354 4788899999999999999999999999999999999887621
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
.. ...--+...|+.. ..+++.- -..+.+.-||.|+...+.+....|.+++..|.-+| ...-++++++|..+++|
T Consensus 349 tg-rq~~rtqAvFNht-EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP---~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 349 TG-RQKHRTQAVFNHT-EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP---VEPAFMTCSDDFRARFW 423 (430)
T ss_pred cc-chhhhhhhhhcCc-cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC---CCCceeeecccceeeee
Confidence 11 1112234456655 5555543 34678999999998765543333378999999998 45667778899999999
Q ss_pred eCC
Q 005325 309 DPE 311 (702)
Q Consensus 309 d~~ 311 (702)
-.+
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 754
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.4e-19 Score=182.68 Aligned_cols=272 Identities=14% Similarity=0.191 Sum_probs=206.0
Q ss_pred CCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCC-CceeEEEECCCCCEEEEEEecC
Q 005325 6 GEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFE-TATTKIRETPDGEFLIVSGIYP 84 (702)
Q Consensus 6 g~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~-~~v~~i~~SpDG~~llatGs~d 84 (702)
+.+++|++..+++++||.|.+- .. .+||.+.+. .++.+.+|.|+|.-.+++++..
T Consensus 224 ~~plllvaG~d~~lrifqvDGk-~N-----------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGK-VN-----------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred CCceEEEecCCCcEEEEEecCc-cC-----------------------hhheeeeeccCccceeeecCCCceEEEecccc
Confidence 4567899999999999999875 11 123444332 4688999999999668999999
Q ss_pred CcEEEEEcCCceE-EEeee--cCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCCCccceEEecCCCcE
Q 005325 85 PQVKVYELRQLSL-KFERH--LDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPRMGRDMAYNSWSCDL 159 (702)
Q Consensus 85 g~I~vwdl~~~~~-~~~~h--~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~~~~~l~~~~~s~~l 159 (702)
..+.+||+.+... ++... .....+...-+|+++++|+..+..|.|.+.... .....+.++....+++|...+..|
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 9999999987322 22211 122234445578899999999999999987655 234456677777799999988889
Q ss_pred EEEecCCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEECCC------CcceeEEecccCCCC
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGEDGAVECFDMRM------RSSAARINAVAPAGD 232 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~DG~V~iWD~~t------~~~v~~l~~~~~~~~ 232 (702)
++++.+|+|++||+.+..++..+....+ .-+++|.++++.+||+||..|.|.|||..+ .+++..+..-
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL----- 434 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL----- 434 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-----
Confidence 9999999999999999999988865432 346778889999999999999999999653 3456655554
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCCeEEEEeecc--CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSS--TGKVLIYDLRSSYPIRVKDHM--FDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~--DG~V~lwDlrs~~~l~~~~h~--~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
...|++|+|+|+ +..||.+|. ...++|-.+.+.....-.... .-..|+|++|+| .+++++++..+|.|.+|
T Consensus 435 -tt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP---~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 435 -TTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP---NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred -heeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC---CCceEEeecCCCceeeE
Confidence 588999999999 999887765 577888888765544311111 123589999999 57777777789999999
Q ss_pred eCC
Q 005325 309 DPE 311 (702)
Q Consensus 309 d~~ 311 (702)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 864
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-18 Score=178.99 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=189.4
Q ss_pred EEEECCCCCEEEEEEecCC--c--EEEEEcCCceEEEeeecC----CceEEEEEEcC------CCCEEEEEECCCeEEEE
Q 005325 67 KIRETPDGEFLIVSGIYPP--Q--VKVYELRQLSLKFERHLD----SEIINFEVLAD------DYSKLAFLCADRSISLH 132 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg--~--I~vwdl~~~~~~~~~h~~----~~vv~~~~ls~------dg~~Las~s~D~~I~iw 132 (702)
-+.+-|+...|+++-..+. . |.||+-.... +--|++ +-+.+..|+.. -|+++|.|+.|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n--lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN--LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc--eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 4556677777555544443 2 4555443322 222222 22344444432 45799999999999999
Q ss_pred ecC--CceEE-EecC-----------------CCcc----ceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCC
Q 005325 133 AKY--GKHYS-LRIP-----------------RMGR----DMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSP 187 (702)
Q Consensus 133 ~~~--g~~~~-~~i~-----------------~~~~----~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~ 187 (702)
++. ..... +.+. ..+. +++++..... |++++.|.+|.+||+.+|++..++..|..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k 287 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK 287 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence 875 21111 1110 0111 3333333333 78888999999999999999999999999
Q ss_pred CeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 188 ALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 188 ~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
.|.++.|+|.. .+|++|+.|++|.+.|.|.... -..+... +.|-.++|+|.....+++++.||+|+-+|+|
T Consensus 288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-------cceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999976 8999999999999999995322 2333333 7899999999867889999999999999999
Q ss_pred CC-eEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc--eeEEecCCCCceeEEEEEcCC-CEEEE
Q 005325 266 SS-YPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE--SMTSIEPTAGKINDVCVFKDS-GLLLL 340 (702)
Q Consensus 266 s~-~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~--~l~~i~~h~~~I~~v~~~p~~-~~l~~ 340 (702)
+. +|++ ++.| ..+|.+|++++ ..-+.+.+++.|+.|++|++..-. .+..-...-+...|+++.|+- .++++
T Consensus 361 ~~~~~vwt~~AH--d~~ISgl~~n~--~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 361 NPGKPVWTLKAH--DDEISGLSVNI--QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred CCCCceeEEEec--cCCcceEEecC--CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEe
Confidence 85 7877 6778 78999999997 334555566689999999997433 222211112345667777755 45667
Q ss_pred EeCCCcEEEEEcCC
Q 005325 341 ALDCSQIPSYFIPD 354 (702)
Q Consensus 341 a~~d~~I~~~~ip~ 354 (702)
++..+.+++|.+-.
T Consensus 437 GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 437 GGEKAVLRVWDIFT 450 (463)
T ss_pred cCccceEEEeeccc
Confidence 77777788887644
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=8.9e-19 Score=182.34 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=162.4
Q ss_pred EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC
Q 005325 14 TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR 93 (702)
Q Consensus 14 s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~ 93 (702)
+..+.|.||+.+.. .+.|.-...- .++ +.|. .|...-..++|++.....|++|+.|++|++||+.
T Consensus 144 t~~~dv~Vfd~tk~-~s~~~~~~~~-------~Pd----l~L~---gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKH-PSKPKASGEC-------RPD----LRLK---GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred CCCCCEEEEEeccC-CCcccccccC-------CCc----eEEE---eecccccccccccccceeEeeccCCCcEEEEecc
Confidence 66778999999987 5555433210 011 1111 2233356799999888889999999999999998
Q ss_pred CceE---------EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcE-EEEe
Q 005325 94 QLSL---------KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDL-LCAA 163 (702)
Q Consensus 94 ~~~~---------~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~l-lv~s 163 (702)
.... .+.+|. ..|. +++|++...++ .+++
T Consensus 209 ~~~~~~~~~~p~~~~~~h~-~~Ve----------------------------------------DV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHE-DVVE----------------------------------------DVAWHPLHEDLFGSVG 247 (422)
T ss_pred ccccCCccccceEEeecCC-ccee----------------------------------------hhhccccchhhheeec
Confidence 6322 233331 1122 33444444442 3334
Q ss_pred cCCCEEEEECC--CCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCC-cceeEEecccCCCCCCCCeEE
Q 005325 164 SSPELYRINLE--QGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMR-SSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 164 ~d~~V~vwdl~--~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vts 239 (702)
.++.+.+||++ +.+.......|...|+|++|+|.+ .+||+||.|++|.+||+|+- .++.++..| ...|.+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H------~dev~~ 321 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH------EDEVFQ 321 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC------CcceEE
Confidence 44455567766 445556678899999999999976 89999999999999999974 467777777 899999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCC-C-----------eEEEEeec-cCCCCeEEEEEeeccCCCCCeEEEe-CCCEE
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRS-S-----------YPIRVKDH-MFDSPIVDIKWHQSINTERPKLITT-DNHIV 305 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs-~-----------~~l~~~~h-~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V 305 (702)
|.|+|.....||+++.|+.+.|||+.. + -|-.++.| +|...|..+.|+| ....++++. +|+++
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp---~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP---NEPWTIASVAEDNIL 398 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC---CCCeEEEEecCCceE
Confidence 999999788999999999999999964 1 12222222 2377899999999 333444433 79999
Q ss_pred EEEeCC
Q 005325 306 RIWDPE 311 (702)
Q Consensus 306 ~IWd~~ 311 (702)
.||.+.
T Consensus 399 qIW~~s 404 (422)
T KOG0264|consen 399 QIWQMA 404 (422)
T ss_pred EEeecc
Confidence 999986
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4e-19 Score=171.35 Aligned_cols=245 Identities=16% Similarity=0.188 Sum_probs=183.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-----ceEEEeeecCCceEEEEEEcCC-CCEEEEEECCCeEEEEec
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-----LSLKFERHLDSEIINFEVLADD-YSKLAFLCADRSISLHAK 134 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-----~~~~~~~h~~~~vv~~~~ls~d-g~~Las~s~D~~I~iw~~ 134 (702)
|...|..+...--|+. |||++.|++|+||.+.+ +...+.+| ..++-.+.|.+|. |..||+++.||.|.||.-
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGH-SGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCC-CCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4555555666667888 99999999999999987 33467777 6778888888875 567799999998888765
Q ss_pred CCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEEEEEcCCeEEE
Q 005325 135 YGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIACGGEDGAVEC 212 (702)
Q Consensus 135 ~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~llasgs~DG~V~i 212 (702)
.+.. |. ....+..|...||+|+|.|.. -+|++++.||.|.|
T Consensus 88 ~~g~--------------------------------w~-----k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 88 ENGR--------------------------------WT-----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred CCCc--------------------------------hh-----hhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 4211 11 123456799999999999875 78999999999999
Q ss_pred EECCCC-c-c-eeEEecccCCCCCCCCeEEEEEcCCC--C-----------CEEEEEeCCCeEEEEEcCCCeEEE---Ee
Q 005325 213 FDMRMR-S-S-AARINAVAPAGDADQEVTALEFDSNG--G-----------FLMGVGSSTGKVLIYDLRSSYPIR---VK 273 (702)
Q Consensus 213 WD~~t~-~-~-v~~l~~~~~~~~~~~~Vtslafspd~--g-----------~~LasGs~DG~V~lwDlrs~~~l~---~~ 273 (702)
.+.++. . . -....+| ...|++++|.|.. | ..|++|+.|..|+||+..++.-.. +.
T Consensus 131 l~~~~~g~w~t~ki~~aH------~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAH------EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred EEEcCCCCccchhhhhcc------ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 998864 1 1 2223333 7899999999851 1 359999999999999999875332 56
Q ss_pred eccCCCCeEEEEEeeccCCCC-CeEEEeCCCEEEEEeCCCC-ce--eEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 274 DHMFDSPIVDIKWHQSINTER-PKLITTDNHIVRIWDPETG-ES--MTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~-~ll~ss~Dg~V~IWd~~tg-~~--l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
+| ...|..++|.|...-.. .++.++.|++|.||..... .. .+.++.....+..+.|++.+.+|++++.+..+.+
T Consensus 205 ~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtl 282 (299)
T KOG1332|consen 205 GH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTL 282 (299)
T ss_pred hc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEE
Confidence 67 78999999999653333 3444557999999988731 11 2223444678999999999999999999999999
Q ss_pred EEc
Q 005325 350 YFI 352 (702)
Q Consensus 350 ~~i 352 (702)
|.-
T Consensus 283 wke 285 (299)
T KOG1332|consen 283 WKE 285 (299)
T ss_pred EEe
Confidence 853
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.7e-18 Score=191.29 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=198.8
Q ss_pred eecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eEEEecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeE
Q 005325 101 RHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HYSLRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRF 178 (702)
Q Consensus 101 ~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~ 178 (702)
.|+.+ .+.+++.++|..|++|+.|+.|++|+.... ...-.+...+. ...+...++.+++++.+++|.+|....+..
T Consensus 11 aht~G--~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGG--LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCc--eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 45555 677788999999999999999999977643 11111221222 455556677899999999999999888876
Q ss_pred EEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 005325 179 LSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK 258 (702)
Q Consensus 179 ~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~ 258 (702)
-..+.--+-++++++|+-+|.++|.||.|-.|++-++........+..| ..+|.+|.|+|. +.+||+.+.||.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh------~apVl~l~~~p~-~~fLAvss~dG~ 161 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH------DAPVLQLSYDPK-GNFLAVSSCDGK 161 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc------CCceeeeeEcCC-CCEEEEEecCce
Confidence 5445445568999999999999999999999999999999999999988 799999999999 999999999999
Q ss_pred EEEEEcCCCeEEEEee-------ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC--CCCceeEE
Q 005325 259 VLIYDLRSSYPIRVKD-------HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP--TAGKINDV 329 (702)
Q Consensus 259 V~lwDlrs~~~l~~~~-------h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~--h~~~I~~v 329 (702)
|+|||+.++....+.. ......+..++|+| .++.+++-+.|+.|++|+..++.....+.. |...++++
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P---k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP---KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecC---CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 9999999877544211 11245678899999 678899999999999999999988877754 34469999
Q ss_pred EEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 330 CVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 330 ~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.|+|+|.+|++++-+++|.+|.+..
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999874
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=1.9e-17 Score=173.55 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=212.0
Q ss_pred cCCCceeEEEECCC--CCEEEEEE-ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 60 WFETATTKIRETPD--GEFLIVSG-IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpD--G~~llatG-s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
.|...|+|++||+- |.++++.- +.+..+.|||.......-.-....+++..+.|.|-...|+..+.-+.+.+|+..+
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 47788999999973 55644433 4566799999887433222222344566666766666666666678899999885
Q ss_pred ceEEEec-------CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCe
Q 005325 137 KHYSLRI-------PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGA 209 (702)
Q Consensus 137 ~~~~~~i-------~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~ 209 (702)
....-+. .++..+++|. .+.+++++.++|.|.+|+..+.++.+....|.+.|.+++...+|.+|- |+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce
Confidence 4333221 1222244444 456799999999999999999998888889999999999998886655 999999
Q ss_pred EEEEECCCCcceeEEeccc------------C-----------------------CCCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 210 VECFDMRMRSSAARINAVA------------P-----------------------AGDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~------------~-----------------------~~~~~~~Vtslafspd~g~~LasGs 254 (702)
|..||-. -+.+..+..+. . ...|......++.+|+ ..++++++
T Consensus 310 i~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~g 387 (626)
T KOG2106|consen 310 IILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCG 387 (626)
T ss_pred EEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeecc
Confidence 9999932 11111111110 0 0346678888999999 89999999
Q ss_pred CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 255 STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 255 ~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.|++|+||+ ..++++.+-. ..|+.++.|+| .+.++++...|...|.|..+...++.-.. +.+++.|.|+|+
T Consensus 388 qdk~v~lW~--~~k~~wt~~~--~d~~~~~~fhp----sg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKII--EDPAECADFHP----SGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred CcceEEEcc--CCceeEEEEe--cCceeEeeccC----cceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 999999999 6667665555 57999999999 55777777899999999998666554444 889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCC
Q 005325 335 SGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 335 ~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
+.+|++++.|+.|++|.+..-|.
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCc
Confidence 99999999999999999987654
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1e-18 Score=182.53 Aligned_cols=264 Identities=15% Similarity=0.189 Sum_probs=208.1
Q ss_pred CcEEEEEcCCceE--EEeeecCCc-eEEEEEEcCCCCEEEEEECCCeEEEEecCCc---eEEEecCCCcc--ceEEecCC
Q 005325 85 PQVKVYELRQLSL--KFERHLDSE-IINFEVLADDYSKLAFLCADRSISLHAKYGK---HYSLRIPRMGR--DMAYNSWS 156 (702)
Q Consensus 85 g~I~vwdl~~~~~--~~~~h~~~~-vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~---~~~~~i~~~~~--~l~~~~~s 156 (702)
..+++||+..+.. .+..|+..+ +..++|-+.+.-.+++.+.|..|.+|...|. ...++...... |+.+...+
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 4799999988544 333333222 4556665554333355566999999987765 32333222222 78888888
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
-.+++++.++.|.+||+....+.+.+..|.+.|+++.++-...+||+++..|.|.|..+.++.....|.... ...
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s-----gqs 166 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS-----GQS 166 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC-----CCe
Confidence 888999999999999999888888999999999999999999999999999999999999998888887762 356
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
|.-|.|+|..-.+|.+++.+|.|.|||+....|++.....|..|...|||+| ++...++..+-|+.|.+||+.+.+..
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC--CccceEEEecccceEEEeeccccccc
Confidence 6799999984556778899999999999998888743333489999999999 32333444567999999999987777
Q ss_pred EEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 317 TSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 317 ~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
..+.. ..+...|+|.+++.+|+.++..|.|..|.+..+.
T Consensus 245 ~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 245 DRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 77777 8899999999999999999999999999988763
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.3e-20 Score=201.34 Aligned_cols=229 Identities=18% Similarity=0.280 Sum_probs=193.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
|..++.|+..-..++. +++|+.+..+-+|.+.. ..+.+..|.. ++..+-|+.+...|+.++.+|+|+|
T Consensus 27 hsaav~~lk~~~s~r~-~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--pIeSl~f~~~E~LlaagsasgtiK~------- 96 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRS-LVTGGEDEKVNLWAIGKPNAITSLTGHES--PIESLTFDTSERLLAAGSASGTIKV------- 96 (825)
T ss_pred hhhhhceeeeecccee-eccCCCceeeccccccCCchhheeeccCC--cceeeecCcchhhhcccccCCceee-------
Confidence 5677888888666666 89999999999999877 3334566632 3666667777667777777776666
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
||++.++.++++.+|...+.+|.|+|.+.++|+|+.|+.+.+||++..
T Consensus 97 --------------------------------wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 97 --------------------------------WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred --------------------------------eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 888888889999999999999999999999999999999999999988
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
.|++.+..| ...|.++.|+|+ |.++++|+.|.+|+|||+..++.+. +..| ...|.++.||| ...++
T Consensus 145 Gc~~~~~s~------~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp----~e~Ll 211 (825)
T KOG0267|consen 145 GCSHTYKSH------TRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHP----LEVLL 211 (825)
T ss_pred CceeeecCC------cceeEEEeecCC-CceeeccCCcceeeeecccccccccccccc--cccccccccCc----hhhhh
Confidence 899999887 688999999999 9999999999999999999999887 5667 78999999998 66666
Q ss_pred EEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 298 ITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 298 ~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
+.+ .|++|++||+.+-+.+.+..+....|.+++|.|++..++++...
T Consensus 212 a~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 212 APGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 655 69999999999999998888878899999999998766655443
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=165.77 Aligned_cols=280 Identities=19% Similarity=0.223 Sum_probs=198.7
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.|+||+. +.+++.+..|+||++..- ..+..|.++.+.++. ..+.++|+||-+-++++.
T Consensus 94 FsSdGK~-lat~~~Dr~Ir~w~~~DF--------~~~eHr~~R~nve~d-------------hpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 94 FSSDGKK-LATISGDRSIRLWDVRDF--------ENKEHRCIRQNVEYD-------------HPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred EcCCCce-eEEEeCCceEEEEecchh--------hhhhhhHhhccccCC-------------CceEEEECCCcceEEEEE
Confidence 4679987 477788888999998653 344556665544432 357899999999877777
Q ss_pred ecCCcEEEEEcCC-----ceE--------EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC-Cc
Q 005325 82 IYPPQVKVYELRQ-----LSL--------KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR-MG 147 (702)
Q Consensus 82 s~dg~I~vwdl~~-----~~~--------~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~-~~ 147 (702)
-....+++|.+.. .+. .|.+.....++.+- +..++.+|++++.|..|.+|+..|......-.. ..
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG-iA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG-IAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe-ecCCceEEEEecCCCcEEEEecCCceeeeecccccc
Confidence 7788999998765 111 22332233444433 445678899999999999999998665532222 22
Q ss_pred c-ceEEecCCCcEEEEecCCCEEEEECC---CCe-----EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 148 R-DMAYNSWSCDLLCAASSPELYRINLE---QGR-----FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 148 ~-~l~~~~~s~~llv~s~d~~V~vwdl~---~g~-----~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
. ..+..|.+.-+++++....|.+|.+- .|. .+..+++|.+.|..++|+|+...+++.|.||+++|||+.-.
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 2 45556666668888899999999763 332 34578899999999999999999999999999999998732
Q ss_pred ----cceeEEecc-cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCC
Q 005325 219 ----SSAARINAV-APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 219 ----~~v~~l~~~-~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
+-...|... .+.....+....|+.+|+ |..||+. ....+++|..+.++.+-.....++..|.+|+|+| +
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~-g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~----~ 384 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPVRLELSPS-GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSS----D 384 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCceEEEeCCC-CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecC----C
Confidence 211122111 011122344458999999 9888874 4567999999988766532223378999999997 8
Q ss_pred CCeEEEeCCCEEEEEeC
Q 005325 294 RPKLITTDNHIVRIWDP 310 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~ 310 (702)
+.+++++.|+.++|+.-
T Consensus 385 g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 385 GKYIATCGDRYVRVIRN 401 (420)
T ss_pred CcEEeeecceeeeeecC
Confidence 88999999999998763
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.8e-19 Score=192.22 Aligned_cols=192 Identities=16% Similarity=0.339 Sum_probs=158.2
Q ss_pred ceEEecCCCc-EEEEecCCCEEEEECCC---CeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeE
Q 005325 149 DMAYNSWSCD-LLCAASSPELYRINLEQ---GRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAAR 223 (702)
Q Consensus 149 ~l~~~~~s~~-llv~s~d~~V~vwdl~~---g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~ 223 (702)
++.+.....+ |++++..|.|.+||+.. .+.+..|..|...|++++|++.. ++|++|+.||+|++||+|..+...+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 4444432222 78888999999999987 56667889999999999999887 8999999999999999999998888
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeC
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTD 301 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~ 301 (702)
+... ...|..|+|+|..+..|+++...|.+.+||+|...... +..| .+||.++.||| +...|+++|.
T Consensus 172 ~~~n------SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhP---nr~~lATGGR 240 (839)
T KOG0269|consen 172 FRSN------SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHP---NREWLATGGR 240 (839)
T ss_pred cccc------chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecC---CCceeeecCC
Confidence 8887 68999999999878999999999999999999865332 5677 78999999999 4455555667
Q ss_pred CCEEEEEeCCCC--ceeEEecCCCCceeEEEEEcCCC-EEEEEe--CCCcEEEEEc
Q 005325 302 NHIVRIWDPETG--ESMTSIEPTAGKINDVCVFKDSG-LLLLAL--DCSQIPSYFI 352 (702)
Q Consensus 302 Dg~V~IWd~~tg--~~l~~i~~h~~~I~~v~~~p~~~-~l~~a~--~d~~I~~~~i 352 (702)
|+.|+|||+.++ +++.+|.. ..+|..|.|-|... .|++++ .+..|++|.|
T Consensus 241 DK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred CccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 999999999865 45666776 78999999999654 455554 4778999975
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.4e-17 Score=163.88 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=186.7
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC------ceEEEeeecCCceEEEEEEcCCC-CEEEEEECCCeEEEEe
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ------LSLKFERHLDSEIINFEVLADDY-SKLAFLCADRSISLHA 133 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~------~~~~~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~ 133 (702)
|..-|+|+.|.+-|+. +||++.|.+|+|||... .+-.+..| ++.|+.+.|.+|.+ +.+|+|+.|+++.||.
T Consensus 12 h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAH-DGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEec-CCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4566899999999999 99999999999999755 33355556 77899999998875 5668999999999996
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEEEEEcCCeEE
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIACGGEDGAVE 211 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~llasgs~DG~V~ 211 (702)
-...... ..-..|. ...++....+.|+.|.|.|.+ -.||+++.||+|+
T Consensus 90 E~~~~~~-------------------------~~~~~Wv-----~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 90 EQEKSEE-------------------------AHGRRWV-----RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred ecccccc-------------------------cccceeE-----EEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 4311100 0001132 235566677899999999986 6789999999999
Q ss_pred EEECCCCcc------eeEEecc-cCCCCCCCCeEEEEEcCC--CCCEEEEEeCC-----CeEEEEEcCCC--eEEE---E
Q 005325 212 CFDMRMRSS------AARINAV-APAGDADQEVTALEFDSN--GGFLMGVGSST-----GKVLIYDLRSS--YPIR---V 272 (702)
Q Consensus 212 iWD~~t~~~------v~~l~~~-~~~~~~~~~Vtslafspd--~g~~LasGs~D-----G~V~lwDlrs~--~~l~---~ 272 (702)
||+.-..-. .+.+..- .+...+..+..||.|+|. ...+||+|+.+ +.+.||....+ +... +
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 998654322 2222211 112234578889999975 13478888776 57899976643 3332 4
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEE-eCCCEEEEEeCCCC--------------------ceeEEecCCCCceeEEEE
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLIT-TDNHIVRIWDPETG--------------------ESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~s-s~Dg~V~IWd~~tg--------------------~~l~~i~~h~~~I~~v~~ 331 (702)
.+| +.||+.|+|.|+....-++|+. +.|| |+||.+... +.+..+..|.+.|..++|
T Consensus 220 ~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 220 PDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred CCC--CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 566 7899999999966434445554 4688 999998731 234556789999999999
Q ss_pred EcCCCEEEEEeCCCcEEEEEc
Q 005325 332 FKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~i 352 (702)
.-.+.+|.++++||.++.|..
T Consensus 297 NmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCceeeehhh
Confidence 999999999999999999853
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.6e-19 Score=202.76 Aligned_cols=282 Identities=17% Similarity=0.232 Sum_probs=205.9
Q ss_pred eEEEECCCCCEEEEEEec----------CCcEEEEEcCCc--e--EEEee--ecCCceEEEEEEcCCCC----EEEEEEC
Q 005325 66 TKIRETPDGEFLIVSGIY----------PPQVKVYELRQL--S--LKFER--HLDSEIINFEVLADDYS----KLAFLCA 125 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~----------dg~I~vwdl~~~--~--~~~~~--h~~~~vv~~~~ls~dg~----~Las~s~ 125 (702)
..++|||++..++|+|+. +.++.||.+... . ++... ..+.....+.|-+ .+. .||.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~-~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGS-YGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecc-cCCCccceeecccc
Confidence 568999999855777753 345566655431 1 11111 1122234444433 333 4888899
Q ss_pred CCeEEEEecCCceE--E-------EecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEee--cCCCCeEEEE
Q 005325 126 DRSISLHAKYGKHY--S-------LRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLN--TQSPALNVVS 193 (702)
Q Consensus 126 D~~I~iw~~~g~~~--~-------~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~ 193 (702)
||.|.+|+...... . -......+.+.|++...+ |++|+.+|+|++||+..-..-.++. .-.+.|.||+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999998764210 0 112334447888888886 6777888999999998743322221 1345799999
Q ss_pred EcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCC-Ce
Q 005325 194 RSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRS-SY 268 (702)
Q Consensus 194 ~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs-~~ 268 (702)
|+..- ++|++++.+|.+.|||+|..+.+-.+..+. ....+..|+|+|++...|++++.|. .|.+||+|. ..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCC----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 99654 789999999999999999888877777661 1245889999999777888888764 699999997 44
Q ss_pred EEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC-EEEEEeCCCc
Q 005325 269 PIRV-KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG-LLLLALDCSQ 346 (702)
Q Consensus 269 ~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~-~l~~a~~d~~ 346 (702)
|+.+ ..| ...|.++.|++ .+...+++++.|+.|.+|+.++|+.+..+.....++.++.|+|... ++++++-+|.
T Consensus 245 P~k~~~~H--~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 245 PLKILEGH--QRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred chhhhccc--ccceeeeccCC--CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 6664 466 67899999998 4445566666899999999999999999999788999999999655 8888999999
Q ss_pred EEEEEcCCCC
Q 005325 347 IPSYFIPDLG 356 (702)
Q Consensus 347 I~~~~ip~lg 356 (702)
|.+|.+....
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999886654
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=7.3e-19 Score=183.69 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=193.3
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEE---e-----cCCCccceEEecCCCcEEEEecCCCEEEEECCC
Q 005325 104 DSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSL---R-----IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ 175 (702)
Q Consensus 104 ~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~---~-----i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~ 175 (702)
..++|+.+.+|...+++.+|+ -|.|+||++.+.-.+. . -..+.+.+...+.++.|++++...++.+||+..
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 467888888998877777666 5789999987432111 1 123455778888999999999999999999976
Q ss_pred CeEE--EEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 176 GRFL--SSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 176 g~~~--~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
-... ..+........+++++|+.+++++|+.||.|.|||+.+...+..|..| ...+.||.++++ |..|.+|
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh------tDGascIdis~d-GtklWTG 569 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH------TDGASCIDISKD-GTKLWTG 569 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC------CCCceeEEecCC-CceeecC
Confidence 5433 233333346677889999999999999999999999999999999998 799999999999 9999999
Q ss_pred eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 254 SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
+-|.+|+.||+|.++.+.. |.+.+.|.++.++| ++..++++-..+.|-|.... +..-+.+.-|.+.|.++.|.+
T Consensus 570 GlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP---~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCP---TGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred CCccceeehhhhhhhhhhh--hhhhhhheecccCC---CccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc
Confidence 9999999999999887654 33467899999998 45566666678888777764 444556778899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 005325 334 DSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip~l 355 (702)
-+.++++.+.|.-+..|..|.-
T Consensus 644 cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred cCceeeecCchhhhhhccCccc
Confidence 9999999999999999988863
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.3e-17 Score=154.88 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=192.9
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCc-----------e-EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQL-----------S-LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~-----------~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
|.+-++||.++| |++|..+|+|-++.+..+ . ..+..| +.++..+.+. . ..|++++ ||.|+=|
T Consensus 13 vf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah-dgpiy~~~f~-d--~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH-DGPIYYLAFH-D--DFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccCCCCCcceeecccc-CCCeeeeeee-h--hheeecc-CceEEEe
Confidence 445578999999 899999999999998761 1 133444 6666666654 2 4565555 5999877
Q ss_pred ecCC--------ceEEEecCC--------CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC
Q 005325 133 AKYG--------KHYSLRIPR--------MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK 196 (702)
Q Consensus 133 ~~~g--------~~~~~~i~~--------~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp 196 (702)
.-.. ......+|- ...+|...|..+.++.++.|+.+|.||+++|++.+.+.+|++.|.|+.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 4321 111122222 223677778888899999999999999999999999999999999999855
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcceeEEecccCC----CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 197 LHGLIACGGEDGAVECFDMRMRSSAARINAVAPA----GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~----~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
....+++|++||+|++||+++++++..+...... ++-...|-+++.+.+ .|++|+ .-.+.||.+++.++..+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEE
Confidence 6678999999999999999999999988765321 123466888888744 777765 45689999999999887
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC-CCEEEEEeCCCcEEEE
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD-SGLLLLALDCSQIPSY 350 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~-~~~l~~a~~d~~I~~~ 350 (702)
... ..+|..+.|. +..+++++..+.|.-|.+. |.+-..++.......+..|... -.+|-+++...+++++
T Consensus 243 fpi--pa~v~~v~F~-----~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPI--PARVHLVDFV-----DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eec--ccceeEeeee-----cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 766 6789999997 5678888888899999875 5555555553334444444332 2344455666666554
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=6.3e-18 Score=181.46 Aligned_cols=327 Identities=15% Similarity=0.195 Sum_probs=244.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEE
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYS 140 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~ 140 (702)
.|..++|-|||..+++++ +..+.|||++... ..+.+|.+. +.+++++.||..+++|+.|..|.+|+.. .....
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDt--VycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDT--VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccce--EEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 789999999999865554 3589999999844 477788776 8899999999999999999999999876 33334
Q ss_pred EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc
Q 005325 141 LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS 220 (702)
Q Consensus 141 ~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~ 220 (702)
........+|.|+|.+..|++++- +..-+|..++....+ . ..+..|+|++|+.+|++|+.|-.+|+|.|-+-. ++.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 434444558888888877777665 445568766543221 1 123478999999999999999999999988543 444
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCC----CEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGG----FLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g----~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
...+..+ .+.+.+|.+|+|+|..| ..+++.....++.+|.+.. +.+- .+.. +..-.||.+.| ++.+
T Consensus 166 k~~I~Rp---gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L--~FdP~CisYf~---NGEy 236 (1081)
T KOG1538|consen 166 KVKIERP---GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRAL--NFDPCCISYFT---NGEY 236 (1081)
T ss_pred ceEEeCC---CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccC--CCCchhheecc---CCcE
Confidence 4455543 23478999999999733 3677778888888877653 2222 2222 34457888887 7889
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCcccccchhhhcC
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESMTEELEEG 375 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~lteelee~ 375 (702)
+++++.|+.+++|.. .|-.+.++.....+|+.|+..|++..+++++.||+|-.|.+-..
T Consensus 237 ~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS-------------------- 295 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS-------------------- 295 (1081)
T ss_pred EEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh--------------------
Confidence 999999999999974 47777777777889999999999999999999999999976431
Q ss_pred CccccccCccccCHHHHhhcCCCcccCcccccccccccccchHhHHHHHhhcCC
Q 005325 376 GQTTIYDNYKFLTREDLEKLNLTSLIGTNLLRAYMHGFFVDYRLYKKAKALVDP 429 (702)
Q Consensus 376 ~~~~~yd~ykfvt~~el~~l~l~~liGt~~l~~ymhgy~~~~~ly~~~~~~~~p 429 (702)
....+|.+ ++.-++.+.+.-+.|||....+|.-+|-..-.+.+|+-..++.=|
T Consensus 296 TVH~ly~~-RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 296 TVHGLYKD-RYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred HhhhhhHH-hhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 11223332 445566777778889999888999999999999999887776544
No 144
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.7e-18 Score=164.03 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=153.7
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEE
Q 005325 113 LADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVV 192 (702)
Q Consensus 113 ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l 192 (702)
+.--|.+||+|+.|++|+|+...+.. ..+.+..|.+|.++|..+
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~------------------------------------~s~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNG------------------------------------QSKLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCC------------------------------------CceeeeEecCCCCCeeEE
Confidence 44456788888888888876544211 114567899999999999
Q ss_pred EEcC--CCCEEEEEEcCCeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCC-CCEEEEEeCCCeEEEEEcCCC
Q 005325 193 SRSK--LHGLIACGGEDGAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNG-GFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 193 ~~sp--~~~llasgs~DG~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~-g~~LasGs~DG~V~lwDlrs~ 267 (702)
+|.. .|.+||+++.||.|.||.-.+++- ..... .|...|++|+|.|.. |..|+++++||.|.|.+.++.
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhh------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 9975 679999999999999999887742 23333 348999999999862 668999999999999999875
Q ss_pred -eEE---EEeeccCCCCeEEEEEeeccCCC-----------CCeEEEeCCCEEEEEeCCCC--ceeEEecCCCCceeEEE
Q 005325 268 -YPI---RVKDHMFDSPIVDIKWHQSINTE-----------RPKLITTDNHIVRIWDPETG--ESMTSIEPTAGKINDVC 330 (702)
Q Consensus 268 -~~l---~~~~h~~~~~I~sl~fsp~~~~~-----------~~ll~ss~Dg~V~IWd~~tg--~~l~~i~~h~~~I~~v~ 330 (702)
... ....| ...|++++|.|...++ .++++++.|+.|+||+..++ ..-..++.|...|.+++
T Consensus 137 g~w~t~ki~~aH--~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 137 GGWTTSKIVFAH--EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred CCccchhhhhcc--ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence 221 24566 6789999999953222 34677778999999999875 34445899999999999
Q ss_pred EEcCCC----EEEEEeCCCcEEEEEcC
Q 005325 331 VFKDSG----LLLLALDCSQIPSYFIP 353 (702)
Q Consensus 331 ~~p~~~----~l~~a~~d~~I~~~~ip 353 (702)
|.|.-+ .|++|+.|+++.+|...
T Consensus 215 waP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hccccCCCceeeEEecCCCcEEEEEec
Confidence 999653 69999999999999876
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.4e-17 Score=162.84 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=202.8
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCC--------------ceEEEeeecCCceEEEEEEc------CCCCEEEEEEC
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQ--------------LSLKFERHLDSEIINFEVLA------DDYSKLAFLCA 125 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~--------------~~~~~~~h~~~~vv~~~~ls------~dg~~Las~s~ 125 (702)
....|||||.. |.+-+.|..++||++.. ....+.-.....|...+|.+ |+..++++.+.
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45789999999 67778999999999865 11122223344466677763 67788899999
Q ss_pred CCeEEEEecC-CceE-EEecC------CCccceEEecCCCcEEEEecCCCEEEEEC-CCCeEEEEee--c-----CCCCe
Q 005325 126 DRSISLHAKY-GKHY-SLRIP------RMGRDMAYNSWSCDLLCAASSPELYRINL-EQGRFLSSLN--T-----QSPAL 189 (702)
Q Consensus 126 D~~I~iw~~~-g~~~-~~~i~------~~~~~l~~~~~s~~llv~s~d~~V~vwdl-~~g~~~~~l~--~-----h~~~V 189 (702)
+.-|.+|+.. |... ..+.- ....++.|.+.... +.++....|+++|+ ..|+....+. . ..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-EeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999987 3221 11111 11226666666554 45667789999999 6666433221 2 35689
Q ss_pred EEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCCC
Q 005325 190 NVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRSS 267 (702)
Q Consensus 190 ~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs~ 267 (702)
.|++|+|.. .++++|+...++-|+.-..+.++..+..| .+.||.|+|+++ |+.|.+|.. |-.|.+||+|..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh------~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH------GGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc------CCCeeeEEeccC-cCeecccccCCCeEEEEeehhc
Confidence 999999987 59999999999999998888999998887 799999999999 999999876 778999999975
Q ss_pred e-EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC-CceeEEecCCCCceeEEEEEcCCCEEEEEeC
Q 005325 268 Y-PIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET-GESMTSIEPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 268 ~-~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
. |+. +..|. +..=..|.|.- ...+.+|+++ .||.|++||+.+ |..+..+..|...||.|+++|--+++++++.
T Consensus 284 ~~pv~~L~rhv-~~TNQRI~FDl--d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 284 RDPVYALERHV-GDTNQRILFDL--DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cchhhhhhhhc-cCccceEEEec--CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 5 554 55553 22335666653 3367777777 699999999998 7878888899999999999999777777665
Q ss_pred CCcEEEEEcCC
Q 005325 344 CSQIPSYFIPD 354 (702)
Q Consensus 344 d~~I~~~~ip~ 354 (702)
. ++|..|.
T Consensus 361 q---r~f~~~~ 368 (406)
T KOG2919|consen 361 Q---RIFKYPK 368 (406)
T ss_pred c---eeecCCC
Confidence 4 3454454
No 146
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.7e-18 Score=175.12 Aligned_cols=237 Identities=11% Similarity=0.184 Sum_probs=186.7
Q ss_pred EeeecCCceEEEEEEcCCC-CEEEEEECCCeEEEEecCCceEE--EecCC-CccceEEecCCCcEEEEecCCCEEEEECC
Q 005325 99 FERHLDSEIINFEVLADDY-SKLAFLCADRSISLHAKYGKHYS--LRIPR-MGRDMAYNSWSCDLLCAASSPELYRINLE 174 (702)
Q Consensus 99 ~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~~~g~~~~--~~i~~-~~~~l~~~~~s~~llv~s~d~~V~vwdl~ 174 (702)
+.+|.++ +.++.-.|.. ..+++|+.||.|+|||+...... +..+. ..+.+++.. ..+++++.|.+|..|-++
T Consensus 62 L~gHrdG--V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 62 LDGHRDG--VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred ccccccc--cchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 3566666 6666666654 56899999999999999853333 22222 344666655 679999999999999765
Q ss_pred CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 175 QGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 175 ~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs 254 (702)
- ..+.++.+.+ .+..|.-+...+.++||+. .|.|||..-..++..+... ...|.++.|+|.....|++|.
T Consensus 138 ~-~p~~tilg~s-~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG------~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 138 G-PPLHTILGKS-VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG------ADSISSVKFNPVETSILASCA 207 (433)
T ss_pred C-Ccceeeeccc-cccccccccccccccccCc--eeeecccccCCccceeecC------CCceeEEecCCCcchheeeec
Confidence 4 3555554443 5777777777789999987 6999999999999999988 689999999998667788888
Q ss_pred CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-CceeEEecCCCCceeEEEEEc
Q 005325 255 STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 255 ~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p 333 (702)
+|+.|.|||+|++.|+.-... +..-+.|+|+| ..-.++++..|.+++.+|++. ..++.....|.+.|.+|.|+|
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnP---eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVIL--TMRTNTICWNP---EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred cCCceEEEecccCCccceeee--eccccceecCc---cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 999999999999999873322 33558899999 233445555799999999986 467888899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 005325 334 DSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.|.-+++|+-|..|.+|.+..
T Consensus 283 tG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred CcchhccccccceEEEeecCC
Confidence 999999999999999997754
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=169.49 Aligned_cols=220 Identities=18% Similarity=0.286 Sum_probs=163.4
Q ss_pred CeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 176 GRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 176 g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs 254 (702)
.+.+.++.+|...=..|+|+|.. ..|++|..-+.|++|.+.++.-..- . .+...|...|-.|+|||.....||+|+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd--~-~Pf~gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD--Q-RPFTGHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec--C-ccccccccchhhhccCCccCceEEeee
Confidence 45677888999889999999954 5688888889999999988652211 1 122245899999999998778999999
Q ss_pred CCCeEEEEEcCCC---eEEEEeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCC---CceeEEecCCCCcee
Q 005325 255 STGKVLIYDLRSS---YPIRVKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPET---GESMTSIEPTAGKIN 327 (702)
Q Consensus 255 ~DG~V~lwDlrs~---~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~t---g~~l~~i~~h~~~I~ 327 (702)
.||+|+|||+|++ .++.++.| ++.|+-|.|+. ...+|+ +++||+++|||+++ ++++..+..|..+|+
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~kAh--~sDVNVISWnr----~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVSTKAH--NSDVNVISWNR----REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred cCceEEEEEecCCCccceeEeecc--CCceeeEEccC----CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 9999999999997 45667888 67999999995 333555 45899999999985 789999999999999
Q ss_pred EEEEEc-CCCEEEEEeCCCcEEEEEcCCCCCCCCccCcccccchhhhcCCcc---ccccCccccC--HHHHhhcCCCccc
Q 005325 328 DVCVFK-DSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESMTEELEEGGQT---TIYDNYKFLT--REDLEKLNLTSLI 401 (702)
Q Consensus 328 ~v~~~p-~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~lteelee~~~~---~~yd~ykfvt--~~el~~l~l~~li 401 (702)
+|.|+| +...|+++++|.+|.+|.+.--.- .||..+.... .+....-||. ++++.++.-..-|
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D-----------~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi 420 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEAD-----------EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI 420 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCC-----------hhhhccccccchhcCCceeEEEecchhHhhhheeccCC
Confidence 999999 566888899999999998753211 1111111111 2334456765 6778888776544
Q ss_pred Cccccccccccccc
Q 005325 402 GTNLLRAYMHGFFV 415 (702)
Q Consensus 402 Gt~~l~~ymhgy~~ 415 (702)
-.-++..-+.||-|
T Consensus 421 PG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 421 PGLLVSTAIDGFNV 434 (440)
T ss_pred CCeEEEecccceeE
Confidence 44355556666654
No 148
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=4.4e-16 Score=168.72 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=202.3
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEee---------------ecCC-------ceEEEEEEcCCC
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFER---------------HLDS-------EIINFEVLADDY 117 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~---------------h~~~-------~vv~~~~ls~dg 117 (702)
.+..+||++|. ++ |++|..+|.|++|+..++.+ ++.+ +..+ +-.-.+.|++..
T Consensus 260 TTnAnCIcVs~--r~-I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~ 336 (1080)
T KOG1408|consen 260 TTNANCICVSS--RL-IACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETT 336 (1080)
T ss_pred ccccceeeeec--ce-EEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCC
Confidence 35567888876 35 89999999999999877322 0000 0000 112234567777
Q ss_pred CEEEEEECCCeEEEEecC-----CceEEEecCCCcc-c------------eEEecCCCcEEEEecCCCEEEEECCCCeEE
Q 005325 118 SKLAFLCADRSISLHAKY-----GKHYSLRIPRMGR-D------------MAYNSWSCDLLCAASSPELYRINLEQGRFL 179 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~-----g~~~~~~i~~~~~-~------------l~~~~~s~~llv~s~d~~V~vwdl~~g~~~ 179 (702)
.+|...-.|.+|+|||+. |..+.+..+..+. + .++.|.++ +.++++|++|++||++.+..-
T Consensus 337 ~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn 415 (1080)
T KOG1408|consen 337 DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNN 415 (1080)
T ss_pred ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeeccccccc
Confidence 899999999999999876 3443332222111 1 22223322 788999999999999863211
Q ss_pred EEee-----c--------------------------------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCccee
Q 005325 180 SSLN-----T--------------------------------QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA 222 (702)
Q Consensus 180 ~~l~-----~--------------------------------h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~ 222 (702)
..+. . ..-.+.||+++|+++.||+|..-|++++||+..-....
T Consensus 416 ~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~ 495 (1080)
T KOG1408|consen 416 QVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC 495 (1080)
T ss_pred ceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence 1100 0 11368999999999999999999999999999888888
Q ss_pred EEecccCCCCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeecc--------
Q 005325 223 RINAVAPAGDADQEVTALEFDSN--GGFLMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSI-------- 290 (702)
Q Consensus 223 ~l~~~~~~~~~~~~Vtslafspd--~g~~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~-------- 290 (702)
.+..| ...|.||.|+.- ...+||+++.|..|+|||+...- ++. +-+| ...|++|.|.-..
T Consensus 496 ~~eAH------esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H--SssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 496 FMEAH------ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH--SSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred heecc------cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc--ccceeEEEEeecCCceEEEec
Confidence 88888 799999999842 13579999999999999987543 333 4555 5677777765321
Q ss_pred --------------------------------------CCCCCeEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEE
Q 005325 291 --------------------------------------NTERPKLITTDNHIVRIWDPETGESMTSIEP---TAGKINDV 329 (702)
Q Consensus 291 --------------------------------------~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v 329 (702)
.+..++++++.|+.|+|||+.+|+....+.+ |.+..-.+
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 2455677778899999999999999988865 55677788
Q ss_pred EEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 330 CVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 330 ~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
...|.+-+|++.+.|..+.+|..-+
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEecc
Confidence 8999999999999999999986544
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.3e-17 Score=169.93 Aligned_cols=258 Identities=14% Similarity=0.179 Sum_probs=194.9
Q ss_pred cCCCcceEEE-EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 4 RGGEGNAMKS-TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 4 ~dg~~~~l~~-s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
.+|.|+++.+ +-+..|.||+|.--..-+|....-++.++.++.... | -...-.|..+|..++|+..-+.+||+|+
T Consensus 188 ~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k--~--~~~~~gHTdavl~Ls~n~~~~nVLaSgs 263 (463)
T KOG0270|consen 188 SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGK--R--SNSASGHTDAVLALSWNRNFRNVLASGS 263 (463)
T ss_pred CCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcc--c--ccccccchHHHHHHHhccccceeEEecC
Confidence 4567765555 566689999999876788888754221111100000 0 0112247788899999999999999999
Q ss_pred cCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC---CceEEEecCCCccceEEecCCCc
Q 005325 83 YPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY---GKHYSLRIPRMGRDMAYNSWSCD 158 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~---g~~~~~~i~~~~~~l~~~~~s~~ 158 (702)
.|.+|++||+.+... ....|+...|.++.|.+.....|++|+.|++|.+.+.. ......++......+++.+.+..
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence 999999999998333 33335578888899999888999999999999999877 34444556666668999999888
Q ss_pred -EEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcc--eeEEecccCCCCC
Q 005325 159 -LLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSS--AARINAVAPAGDA 233 (702)
Q Consensus 159 -llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~--v~~l~~~~~~~~~ 233 (702)
++++..+|.|+-+|++.. +++.+++.|.+.|.+|++++.. +++++++.|++|++|++....+ +..-...
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~------ 417 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK------ 417 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc------
Confidence 455567788999999875 8999999999999999999776 8999999999999999875433 2222222
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
-+...|.+++|+....||.|+..+.++|||+-+..++.
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 23477888999867789999999999999998876543
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.75 E-value=1.9e-16 Score=171.81 Aligned_cols=288 Identities=13% Similarity=0.120 Sum_probs=218.0
Q ss_pred cCCCceeEEEECCCC--CEEEEEEecCCcEEEEEcCCce----------------------E-E----------EeeecC
Q 005325 60 WFETATTKIRETPDG--EFLIVSGIYPPQVKVYELRQLS----------------------L-K----------FERHLD 104 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG--~~llatGs~dg~I~vwdl~~~~----------------------~-~----------~~~h~~ 104 (702)
.|..-|.+|+|..-+ .++||+++.|..|+||.+.-.. + . +.+|.+
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 367788889987654 4779999999999999763210 0 1 125655
Q ss_pred CceEEEEEEcCCCCEEEEEECCCeEEEEecCCc---e-EEEecCCCc------cceEEecCCCcEEEEecCCCEEEEECC
Q 005325 105 SEIINFEVLADDYSKLAFLCADRSISLHAKYGK---H-YSLRIPRMG------RDMAYNSWSCDLLCAASSPELYRINLE 174 (702)
Q Consensus 105 ~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~---~-~~~~i~~~~------~~l~~~~~s~~llv~s~d~~V~vwdl~ 174 (702)
. +..++++|.+..|++++.|.++.+|.+... . ...++...+ ....+++.+..+++-+..|..++|-..
T Consensus 269 W--V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 269 W--VYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred c--eEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 5 777788899889999999999999987733 2 224443322 155666776667788888999999733
Q ss_pred CC---eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC-----------------cceeEEe---------
Q 005325 175 QG---RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR-----------------SSAARIN--------- 225 (702)
Q Consensus 175 ~g---~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~-----------------~~v~~l~--------- 225 (702)
.. .....+.+|...|..|+|+|.|.+|++.+.|.+-++|-.-.. +++..++
T Consensus 347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 22 233456789999999999999999999999999888754310 0111111
Q ss_pred ---------cccCC------------------------------------------------------------------
Q 005325 226 ---------AVAPA------------------------------------------------------------------ 230 (702)
Q Consensus 226 ---------~~~~~------------------------------------------------------------------ 230 (702)
.+...
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 00000
Q ss_pred ---------------CCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCCeEEE-EeeccCCCCeEEEEEeec
Q 005325 231 ---------------GDADQEVTALEFDSNGGFLMGVGSSTG-----KVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 231 ---------------~~~~~~Vtslafspd~g~~LasGs~DG-----~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~ 289 (702)
.+|...|++++.+|+ |+++|+++... .|+||+..+-.... +..| ...|+.|+|+|
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H--sLTVT~l~FSp- 582 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH--SLTVTRLAFSP- 582 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccchhhhheeccc--ceEEEEEEECC-
Confidence 357889999999999 99999987654 59999998866655 7888 68999999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCC----ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 290 INTERPKLITTDNHIVRIWDPETG----ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg----~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++.+|++.+.|+++.+|..... -.+..+..|..-|.++.|+|++..+++|+.|..+.+|-+|..
T Consensus 583 --dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 --DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred --CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 6777777889999999998643 234557899999999999999999999999999999999987
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=1.5e-16 Score=171.11 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=193.9
Q ss_pred eEEEEC--CCCCEEEEEEecCCcEEEEEcCCceE--------EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 66 TKIRET--PDGEFLIVSGIYPPQVKVYELRQLSL--------KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 66 ~~i~~S--pDG~~llatGs~dg~I~vwdl~~~~~--------~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
....|+ |...+|||.+..+|.|.+||...... .+..| ...|.++.|.. ....|++++.|.++++|++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAP-GESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCC-CceeEEEccCCceeeeeeec
Confidence 345554 56678899999999999999887332 33445 55577888777 55788999999999999998
Q ss_pred C-ceEEE--ecCC--CccceEEecCCCc-EEEEecCCCEEEEECCCCe--------------------EE-------EEe
Q 005325 136 G-KHYSL--RIPR--MGRDMAYNSWSCD-LLCAASSPELYRINLEQGR--------------------FL-------SSL 182 (702)
Q Consensus 136 g-~~~~~--~i~~--~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~--------------------~~-------~~l 182 (702)
+ .+.-. .+.+ ..+++++.+.+.. +++|+.|+.|.+||+.-.. .. ...
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 3 33323 2222 3348999999888 5677889999999975322 00 001
Q ss_pred ecCCCC----eEEEEEcCCCCEEEEEEc-CCeEEEEECCCCcceeEEeccc--CC---CCCCCCeEEEEEcCCCCCEEEE
Q 005325 183 NTQSPA----LNVVSRSKLHGLIACGGE-DGAVECFDMRMRSSAARINAVA--PA---GDADQEVTALEFDSNGGFLMGV 252 (702)
Q Consensus 183 ~~h~~~----V~~l~~sp~~~llasgs~-DG~V~iWD~~t~~~v~~l~~~~--~~---~~~~~~Vtslafspd~g~~Las 252 (702)
..|... |+.+.| .|...||+++. |+.|++||++............ .. ......++++..+.. |.+|.+
T Consensus 211 kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-Gt~L~A 288 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-GTYLFA 288 (720)
T ss_pred ccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-CCeEEE
Confidence 112333 444444 56778888877 9999999999765443322210 00 112467889999888 888888
Q ss_pred EeCCCeEEEEEcCCCe--EEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC-ceeEEecCCCCceeE
Q 005325 253 GSSTGKVLIYDLRSSY--PIRV-KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG-ESMTSIEPTAGKIND 328 (702)
Q Consensus 253 Gs~DG~V~lwDlrs~~--~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg-~~l~~i~~h~~~I~~ 328 (702)
.+.|+.|++|++++-. |+.. .++....--..-..+| ++.+++.++.|..+.||.+.+. .+...+.+|...|++
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT 365 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC---CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence 8889999999999743 5443 3332111111222344 4566666678999999999974 456678899999999
Q ss_pred EEEEc-CCCEEEEEeCCCcEEEEEc
Q 005325 329 VCVFK-DSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 329 v~~~p-~~~~l~~a~~d~~I~~~~i 352 (702)
++|.| .-.-+++|++|..+.+|.+
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred EeeccccCCCceeeccCcceEEEec
Confidence 99998 4455888899999999987
No 152
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.9e-16 Score=165.41 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=160.6
Q ss_pred CccCCCcceEEEEecCCcEEEEcccC----CCCC----ccc--cchHhhhhhccCcccccceeee------ecccCCCce
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQ----QRSV----AAW--LTPKKQRALRKNIDYQRRVELI------QDLWFETAT 65 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g----~~sl----p~w--~~~k~kr~lk~~~~~~~rieli------qd~~~~~~v 65 (702)
+||||+.++-+.+.--.|+||++..- .+.+ -.+ |+.--.+.. .....+.|++- ....+|...
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v--~L~~DR~IefHak~G~hy~~RIP~~G 136 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSV--FLQNDRTIEFHAKYGRHYRTRIPKFG 136 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhhe--EeecCceeeehhhcCeeeeeecCcCC
Confidence 47999986666677788999999754 0111 000 111000000 00111222221 122345555
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR 145 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~ 145 (702)
..|+++.-.-- |.+++....|.-+++......-...+++..+.++-+++--..|++|+.++.|.+||+......
T Consensus 137 RDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv----- 210 (703)
T KOG2321|consen 137 RDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV----- 210 (703)
T ss_pred ccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhh-----
Confidence 66666532222 344444566777788774432222233344666666666678888888999999987632110
Q ss_pred CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 146 MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 146 ~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
..++....-.-.+.......|+++.|+.+|-.+++|+.+|.|.|||+|+.+++..-.
T Consensus 211 -----------------------~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 211 -----------------------GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred -----------------------eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 112221110011122233469999999889999999999999999999988876554
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEE
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIV 305 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V 305 (702)
.. ...+|..+.|.+.++.--++......++|||-.++++...... ...|+.+|+.| +.+.++++-++..+
T Consensus 268 h~-----~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p---~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 268 HG-----YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVP---GSGMFFTANESSKM 337 (703)
T ss_pred cC-----CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeec---CCceEEEecCCCcc
Confidence 43 2578999999876344444545667899999999999875554 45799999998 34444444455555
Q ss_pred EEEeC
Q 005325 306 RIWDP 310 (702)
Q Consensus 306 ~IWd~ 310 (702)
..|=+
T Consensus 338 ~~yyi 342 (703)
T KOG2321|consen 338 HTYYI 342 (703)
T ss_pred eeEEc
Confidence 54443
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6e-18 Score=183.99 Aligned_cols=170 Identities=15% Similarity=0.273 Sum_probs=149.8
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEE
Q 005325 171 INLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLM 250 (702)
Q Consensus 171 wdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~L 250 (702)
|.+..-..+..|.+|.++|.||.|++...+|++|+.+|+|++||+...+.+.+|.+| ...+++|.|+|- +.++
T Consensus 55 ~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh------~~~~~sv~f~P~-~~~~ 127 (825)
T KOG0267|consen 55 WAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH------LLNITSVDFHPY-GEFF 127 (825)
T ss_pred ccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcc------ccCcceeeeccc-eEEe
Confidence 333333334458899999999999999999999999999999999999999999998 689999999999 9999
Q ss_pred EEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecCCCCceeE
Q 005325 251 GVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEPTAGKIND 328 (702)
Q Consensus 251 asGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~ 328 (702)
|.|+.|+.+.+||++...|.+ ..+| ...|..+.|+| ++.+++ +++|.+|+|||...|+.+..+..|...|..
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~--~~vv~~l~lsP----~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSH--TRVVDVLRLSP----DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS 201 (825)
T ss_pred ccccccccceehhhhccCceeeecCC--cceeEEEeecC----CCceeeccCCcceeeeecccccccccccccccccccc
Confidence 999999999999999766666 4555 67889999999 665555 457899999999999999999999999999
Q ss_pred EEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 329 VCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 329 v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+.|+|..-++..++.|..+.+|.+-
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccc
Confidence 9999999999999999999999764
No 154
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=6.8e-16 Score=152.47 Aligned_cols=249 Identities=16% Similarity=0.285 Sum_probs=177.4
Q ss_pred cCcccccceeeee------------cccCCCceeEEEECCCCC----EEEEEEecCCcEEEEEcCC--ce--------EE
Q 005325 45 KNIDYQRRVELIQ------------DLWFETATTKIRETPDGE----FLIVSGIYPPQVKVYELRQ--LS--------LK 98 (702)
Q Consensus 45 ~~~~~~~rieliq------------d~~~~~~v~~i~~SpDG~----~llatGs~dg~I~vwdl~~--~~--------~~ 98 (702)
...++.++|++++ .|+||-.++.+-|.||.. -+|||. +..+++|.+.. .. ..
T Consensus 67 ~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~ 144 (364)
T KOG0290|consen 67 FIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNN 144 (364)
T ss_pred eccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccC
Confidence 4467778888764 478889999999999873 235654 45899999874 11 11
Q ss_pred EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe-
Q 005325 99 FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR- 177 (702)
Q Consensus 99 ~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~- 177 (702)
-..+..+++.+|-|..-|-++|.+++-|-+..| ||++++.
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi---------------------------------------Wdie~~~~ 185 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI---------------------------------------WDIETGVS 185 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEE---------------------------------------EEEeeccc
Confidence 122334455666666556566666666666655 5555542
Q ss_pred --EEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 178 --FLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 178 --~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs 254 (702)
....+..|...|..|+|...+ ++||+.+.||.|++||+|....-..+-.. .....+...|+|++.+.++||+-.
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~---p~~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED---PSPSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC---CCCCCcceeeccCcCCchHHhhhh
Confidence 234567899999999999865 89999999999999999976544333322 111478899999998678888755
Q ss_pred CC-CeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC------ceeEEecCCCCc
Q 005325 255 ST-GKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG------ESMTSIEPTAGK 325 (702)
Q Consensus 255 ~D-G~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg------~~l~~i~~h~~~ 325 (702)
.| ..|.|.|+|... |+. +..| ...|+.|+|.| ....++.++|+|..+-|||+.+. .++..... .+.
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L~~H--~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a-~~E 337 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARLRNH--QASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA-GGE 337 (364)
T ss_pred cCCceEEEEEecCCCcceehhhcC--cccccceEecC--CCCceeeecCCcceEEEEecccccccCCCCchhhhhc-cce
Confidence 54 579999999854 555 7778 78999999999 45677888889999999999752 23334444 779
Q ss_pred eeEEEEEcC-CCEEEEEe
Q 005325 326 INDVCVFKD-SGLLLLAL 342 (702)
Q Consensus 326 I~~v~~~p~-~~~l~~a~ 342 (702)
||.+.|+|. ...|+++.
T Consensus 338 VNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eeeeeecccCCCEEEEEe
Confidence 999999984 44555543
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=2.4e-16 Score=168.60 Aligned_cols=113 Identities=14% Similarity=0.256 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-------EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEE
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-------PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVR 306 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-------~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~ 306 (702)
..|+.+.|+|-+...||+++.||.|+||.+..+. |-. +..| +..|++|.|||-. ..-+++++.|-+|+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h--~eKI~slRfHPLA--advLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH--GEKITSLRFHPLA--ADVLAVASYDSTIE 703 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc--cceEEEEEecchh--hhHhhhhhccceee
Confidence 5677889998668899999999999999987532 222 5667 7899999999932 34455566799999
Q ss_pred EEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
|||+.+++....+.+|.+.|.+++|+|++..+++.|.|++|++|.
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 999999999999999999999999999999999999999999986
No 156
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1e-15 Score=172.30 Aligned_cols=281 Identities=18% Similarity=0.301 Sum_probs=202.9
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEee--ecCCceEEEEEEcC-CCCEEEEEECCCeEEEEecC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFER--HLDSEIINFEVLAD-DYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~--h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~ 135 (702)
.+.....+.|+|=... ++++...-.|+|||...... .|.. .....|.+++.+.. |...+++++.||.|+||..+
T Consensus 1063 n~~~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCCceeeecCCCce-eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3455778889988877 67777678999999987433 2222 12345667776664 44677999999999999766
Q ss_pred Cce---EE-E--------ecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-CCeEEEEEcC-CC
Q 005325 136 GKH---YS-L--------RIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-PALNVVSRSK-LH 198 (702)
Q Consensus 136 g~~---~~-~--------~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-~~V~~l~~sp-~~ 198 (702)
... .. + ..+. .+--+.|...++.|++++.-..|.+||......+..+...+ ..|+++.-+- .+
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 221 11 0 0011 11133444556668888888889999999988887765443 3677776543 35
Q ss_pred CEEEEEEcCCeEEEEECCCCc---ceeEEecccCCCCCCCC--eEEEEEcCCCCCE-EEEEeCCCeEEEEEcCCCeE---
Q 005325 199 GLIACGGEDGAVECFDMRMRS---SAARINAVAPAGDADQE--VTALEFDSNGGFL-MGVGSSTGKVLIYDLRSSYP--- 269 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~---~v~~l~~~~~~~~~~~~--Vtslafspd~g~~-LasGs~DG~V~lwDlrs~~~--- 269 (702)
++|++|..||.|++||.|... .+.....| +.. |..+.+.+. |.- |++|+.+|.|.+||+|....
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h------~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREH------NDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeeccc------CCcccceeEEeecC-CCcceeeeccCCeEEEEecccCccccc
Confidence 999999999999999999643 45666666 344 999999998 554 99999999999999998421
Q ss_pred EEEeec-cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC-------CCceeEEEEEcCCCEEEEE
Q 005325 270 IRVKDH-MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT-------AGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 270 l~~~~h-~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h-------~~~I~~v~~~p~~~~l~~a 341 (702)
+.+..| .|++.++++..|+ ...+++++..+.|+||++. |+.+..+..+ .+.+.+++|||..-+++++
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~----hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHE----HAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ceeeeccccCccceeeeecc----CCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 222222 3566799999997 7788888877999999986 5554444332 3478999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 005325 342 LDCSQIPSYFIPD 354 (702)
Q Consensus 342 ~~d~~I~~~~ip~ 354 (702)
..|..|.+|..+.
T Consensus 1370 ~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEK 1382 (1387)
T ss_pred cCCceEEEeecCC
Confidence 9999999998765
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=9.3e-16 Score=165.16 Aligned_cols=276 Identities=17% Similarity=0.190 Sum_probs=189.0
Q ss_pred cceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcE
Q 005325 8 GNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQV 87 (702)
Q Consensus 8 ~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I 87 (702)
.++...-.+++|.+|+...- .-. -+++.| ..-+-|-.+|..+.|-| |+..|++.+.|.+|
T Consensus 65 HiLavadE~G~i~l~dt~~~-~fr------~ee~~l------------k~~~aH~nAifDl~wap-ge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSI-VFR------LEERQL------------KKPLAHKNAIFDLKWAP-GESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhh-hcc------hhhhhh------------cccccccceeEeeccCC-CceeEEEccCCcee
Confidence 33334456777888888765 111 112222 12234678899999999 88889999999999
Q ss_pred EEEEcCCceE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--C-------------ceEE--------
Q 005325 88 KVYELRQLSL----KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--G-------------KHYS-------- 140 (702)
Q Consensus 88 ~vwdl~~~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g-------------~~~~-------- 140 (702)
++||+.+..+ .+.+|..+ +-..++...|-..|++|+.|+.|.||+.. + .+..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~S-vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGS-VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeccceeecceeecccccc-cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 9999998332 46777554 44444444556778999999999999764 1 0100
Q ss_pred -EecCC--Cc----c---ceEEecCCCcEEEEec-CCCEEEEECCCCeEEE--------EeecC---CCCeEEEEEcCCC
Q 005325 141 -LRIPR--MG----R---DMAYNSWSCDLLCAAS-SPELYRINLEQGRFLS--------SLNTQ---SPALNVVSRSKLH 198 (702)
Q Consensus 141 -~~i~~--~~----~---~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~--------~l~~h---~~~V~~l~~sp~~ 198 (702)
.++++ .. . .+.+......|++++. |+.|.+||+....... .+..| .-.+.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 01111 00 0 1445555666777777 8899999998754322 22233 2367888888888
Q ss_pred CEEEEEEcCCeEEEEECCCC--cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe--EEEEee
Q 005325 199 GLIACGGEDGAVECFDMRMR--SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY--PIRVKD 274 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~--~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~--~l~~~~ 274 (702)
.+|++.+.|++|++|++++- .++..+..+.. ...-..-..+|+ +.+|++|+.|..+++|.+.+.. +..+.+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~----~sf~vks~lSpd-~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN----SSFYVKSELSPD-DCSLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCccc----ceeeeeeecCCC-CceEeccCCCcceeeeeecCccCChhhhhC
Confidence 77666667999999999864 34555444410 111122346788 9999999999999999999855 344677
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
| ...|++++|.| +....++++++|..++||++..+
T Consensus 359 h--t~eVt~V~w~p--S~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 H--TREVTTVRWLP--SATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred c--ceEEEEEeecc--ccCCCceeeccCcceEEEeccCc
Confidence 7 67899999999 66888999999999999999654
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=2.4e-15 Score=148.50 Aligned_cols=266 Identities=15% Similarity=0.184 Sum_probs=190.0
Q ss_pred EEEEe----cCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcCCCCEEEEEECC-------CeEEEEecCCceEE--
Q 005325 78 IVSGI----YPPQVKVYELRQ----LSLKFERHLDSEIINFEVLADDYSKLAFLCAD-------RSISLHAKYGKHYS-- 140 (702)
Q Consensus 78 latGs----~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D-------~~I~iw~~~g~~~~-- 140 (702)
+.+|+ ++++|++..+.. +..+...|..++|-.+...+.+...|+++..+ -.+.||.+......
T Consensus 29 FlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~ 108 (370)
T KOG1007|consen 29 FLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN 108 (370)
T ss_pred EEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc
Confidence 45554 367888887766 22244456577787777777777777777663 24678977632111
Q ss_pred -------EecC--CCc--cceEEecCCCcEEEEecCCCEEEEECCCCeE-EEEee-----cCCCCeEEEEEcCCC--CEE
Q 005325 141 -------LRIP--RMG--RDMAYNSWSCDLLCAASSPELYRINLEQGRF-LSSLN-----TQSPALNVVSRSKLH--GLI 201 (702)
Q Consensus 141 -------~~i~--~~~--~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~-~~~l~-----~h~~~V~~l~~sp~~--~ll 201 (702)
..++ ..+ .++.|.|.+ +-+++-.++.|.+|++..+.. +..+. .|....++-+|+|.+ +.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNS-DKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 1112 123 478888844 444445599999999988765 33332 244567888999955 666
Q ss_pred EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCC
Q 005325 202 ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDS 279 (702)
Q Consensus 202 asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~ 279 (702)
++ ..|+++.+||+|+......+... |...|..|.|+|+...+|++|+.||.|+|||+|+.+ |+. +.+| ..
T Consensus 188 ~t-t~d~tl~~~D~RT~~~~~sI~dA-----Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H--sH 259 (370)
T KOG1007|consen 188 AT-TSDSTLQFWDLRTMKKNNSIEDA-----HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH--SH 259 (370)
T ss_pred EE-eCCCcEEEEEccchhhhcchhhh-----hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC--ce
Confidence 66 45799999999998888777665 467899999999966678999999999999999855 665 5667 66
Q ss_pred CeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc-----------------------------eeEEecCCCCceeEEE
Q 005325 280 PIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE-----------------------------SMTSIEPTAGKINDVC 330 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~-----------------------------~l~~i~~h~~~I~~v~ 330 (702)
.|+++.|+| ..+..+|+++.|..|.+|...+-. .+.++..|...|.+++
T Consensus 260 WvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 260 WVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred EEEEEEecC--ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 999999999 336666677789999999864211 1345667899999999
Q ss_pred EEcCCCE-EEEEeCCCcEEEEEcCC
Q 005325 331 VFKDSGL-LLLALDCSQIPSYFIPD 354 (702)
Q Consensus 331 ~~p~~~~-l~~a~~d~~I~~~~ip~ 354 (702)
|+.-.+. +++-+.||+|.+-.+|.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCCh
Confidence 9997765 55568899999877764
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.4e-13 Score=147.96 Aligned_cols=283 Identities=23% Similarity=0.340 Sum_probs=208.0
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--E-EEeeecCCceEEEEEEcCCCC-EEEEEEC-CCeEEEEe
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--L-KFERHLDSEIINFEVLADDYS-KLAFLCA-DRSISLHA 133 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~-~~~~h~~~~vv~~~~ls~dg~-~Las~s~-D~~I~iw~ 133 (702)
..+...+.++.+.+.+.. +++++.++.+.+|+..... . .+.......+.......+++. .++..+. |+.+.+|+
T Consensus 62 ~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 62 RGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 357788999999999999 7778899999999998853 2 333322212333332266666 4555445 99999999
Q ss_pred cCC--ceEE-EecC-CCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEEcC
Q 005325 134 KYG--KHYS-LRIP-RMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGGED 207 (702)
Q Consensus 134 ~~g--~~~~-~~i~-~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs~D 207 (702)
... .... +..+ .....+.+.+....+++++. ++.+.+|++..+..+..+..|...|.+++|+|++. ++++++.|
T Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 875 2222 2222 22336777777776666664 89999999999999999999999999999999997 66666999
Q ss_pred CeEEEEECCCCccee-EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE-EEE-eeccCCCCeEEE
Q 005325 208 GAVECFDMRMRSSAA-RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP-IRV-KDHMFDSPIVDI 284 (702)
Q Consensus 208 G~V~iWD~~t~~~v~-~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~-l~~-~~h~~~~~I~sl 284 (702)
+.|.+||...+..+. .+..+ ...+ ...|+|+ +..+++++.|+.+++||++.... +.. ..| ..+|.++
T Consensus 221 ~~i~~wd~~~~~~~~~~~~~~------~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 290 (466)
T COG2319 221 GTIRLWDLSTGKLLRSTLSGH------SDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSV 290 (466)
T ss_pred CcEEEEECCCCcEEeeecCCC------Ccce-eEeECCC-CCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEE
Confidence 999999998777777 56666 3443 3389999 78889999999999999997664 333 344 7899999
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec--CCCCceeEEEEEcCC-CEEEEE-eCCCcEEEEEcCCCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE--PTAGKINDVCVFKDS-GLLLLA-LDCSQIPSYFIPDLG 356 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~--~h~~~I~~v~~~p~~-~~l~~a-~~d~~I~~~~ip~lg 356 (702)
.|+| ....+++++.|+.+.+|+..+........ .|...|..+.| +.. ..++.+ ..++.+.+|.+....
T Consensus 291 ~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 291 AFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EECC---CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9997 45556665667889999999887776665 77778999999 533 455555 567777777666543
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.9e-14 Score=154.95 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=182.2
Q ss_pred EEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEc
Q 005325 13 STLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYEL 92 (702)
Q Consensus 13 ~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl 92 (702)
+-++++|.|||++.+ |+.++ .|. ..-..++-.++|++.++. .+.+.+|.|.-||+
T Consensus 43 sRt~g~IEiwN~~~~------w~~~~----------------vi~-g~~drsIE~L~W~e~~RL--FS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNN------WFLEP----------------VIH-GPEDRSIESLAWAEGGRL--FSSGLSGSITEWDL 97 (691)
T ss_pred eccCCcEEEEccCCC------ceeeE----------------EEe-cCCCCceeeEEEccCCeE--EeecCCceEEEEec
Confidence 446778999999887 54321 111 134567889999966664 67778999999999
Q ss_pred CCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC--ceEEEecCCC-cc--ceEEecCCCcEEEEecCCC
Q 005325 93 RQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG--KHYSLRIPRM-GR--DMAYNSWSCDLLCAASSPE 167 (702)
Q Consensus 93 ~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g--~~~~~~i~~~-~~--~l~~~~~s~~llv~s~d~~ 167 (702)
.++..+......+..+-.++.+|.+..++.+|.||.+.+..... ..+...+++. ++ ++.+.+....++.|+.|+-
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 99887777666666677778888889999999999777776662 2333444554 44 7777777777899999999
Q ss_pred EEEEECCCCeEEEEeec--------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 168 LYRINLEQGRFLSSLNT--------QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 168 V~vwdl~~g~~~~~l~~--------h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
|.+||...+..+..... ..--|++|.|-. ...|++|..-|+|.+||...++.+..+.+| ...|.|
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h------~adVl~ 250 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCH------DADVLA 250 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhh------hcceeE
Confidence 99999999987762221 122466777663 458999999999999999999999999999 799999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-----EeeccCCCCeEEEEEee
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-----VKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~-----~~~h~~~~~I~sl~fsp 288 (702)
|+..++ +.++++++.|+.|..|...+....+ ...| ...|.+++..+
T Consensus 251 Lav~~~-~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h--~hdvrs~av~~ 301 (691)
T KOG2048|consen 251 LAVADN-EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH--AHDVRSMAVIE 301 (691)
T ss_pred EEEcCC-CCeEEEccCCCceEEEEecCCccceeeeccccCC--cccceeeeeec
Confidence 999999 9999999999999999887654311 1223 45677777664
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=1.7e-14 Score=156.78 Aligned_cols=283 Identities=14% Similarity=0.101 Sum_probs=193.5
Q ss_pred cCCCceeEEEECCCCC---EEEEEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 60 WFETATTKIRETPDGE---FLIVSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~---~llatGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
.|...|+|+.+-|+.+ + |++|+.|++|.+|.+.... ..+..| .. .+.++......+...+.|+++.+|
T Consensus 52 GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~~~~g~-~~---~~~cv~a~~~~~~~~~ad~~v~vw 126 (764)
T KOG1063|consen 52 GHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIYTIQGH-CK---ECVCVVARSSVMTCKAADGTVSVW 126 (764)
T ss_pred CCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEEeecCc-ce---eEEEEEeeeeEEEeeccCceEEEe
Confidence 4788999999998887 6 8999999999999998411 233332 22 233333322333333789999999
Q ss_pred ecCCce----EEEecCC---CccceEEecCCCc--EEEEecCCCEEEEECCCC--eEEEEeecCCCCeEEEEEcCCC---
Q 005325 133 AKYGKH----YSLRIPR---MGRDMAYNSWSCD--LLCAASSPELYRINLEQG--RFLSSLNTQSPALNVVSRSKLH--- 198 (702)
Q Consensus 133 ~~~g~~----~~~~i~~---~~~~l~~~~~s~~--llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~~l~~sp~~--- 198 (702)
+..+.. ..+++.. ...+++..+.... +++++++..|.++.-... +.+..+.+|.+.|.+|+|+..+
T Consensus 127 ~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 127 DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred ecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCc
Confidence 985322 1222211 1126666662222 333344444555544433 4567889999999999998655
Q ss_pred CEEEEEEcCCeEEEEECCCCcc---------------------eeEEe----cccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 199 GLIACGGEDGAVECFDMRMRSS---------------------AARIN----AVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~---------------------v~~l~----~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
-+||++|.|..|+||.+.-+.. ...+. .+.-..+|...|+++.|+|. +..|+++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~-~~~LLSA 285 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE-GLDLLSA 285 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc-hhhheec
Confidence 4899999999999998763221 10111 11112478999999999999 9999999
Q ss_pred eCCCeEEEEEcCCCeEEE-----E--eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC---CceeEEecCCC
Q 005325 254 SSTGKVLIYDLRSSYPIR-----V--KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET---GESMTSIEPTA 323 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~l~-----~--~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t---g~~l~~i~~h~ 323 (702)
+.|.++.+|......-+. + .++ .........|+| ++..+++.+-.|..++|.... ......+.+|.
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg-~a~GF~g~lw~~---n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGG-SAGGFWGGLWSP---NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccc-cccceeeEEEcC---CCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 999999999876543221 1 222 134478899998 444555666789999998433 23445678899
Q ss_pred CceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 324 GKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 324 ~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
..|.+|+|.|.+.+|++++.|.+-++|.-
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecc
Confidence 99999999999999999999999888753
No 162
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=7.4e-15 Score=145.28 Aligned_cols=202 Identities=15% Similarity=0.225 Sum_probs=151.7
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce------------EEEec--CCCcc----ceEEecCCCcE-EEEec
Q 005325 104 DSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH------------YSLRI--PRMGR----DMAYNSWSCDL-LCAAS 164 (702)
Q Consensus 104 ~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~------------~~~~i--~~~~~----~l~~~~~s~~l-lv~s~ 164 (702)
.+.|..+.+-...|+++++++.|+.|.+||+.... ..+.. +..++ ++.+.|...-+ .+++.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 34445555555678999999999999999876311 10111 11122 55666665554 55667
Q ss_pred CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEE
Q 005325 165 SPELYRINLEQGRFLSSLNTQSPALNVVSRSKL---HGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALE 241 (702)
Q Consensus 165 d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~---~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtsla 241 (702)
|..+.+||..+-+....|+.. +.|.+-+++|- +.++|+|..|-.|++.|+.+|..-+++..| ...|.++.
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH------r~~vlaV~ 195 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH------RDGVLAVE 195 (397)
T ss_pred cceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc------cCceEEEE
Confidence 889999999999888777654 36777788874 579999999999999999999999999998 79999999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCC-eEEE-Eeecc------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 242 FDSNGGFLMGVGSSTGKVLIYDLRSS-YPIR-VKDHM------------FDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 242 fspd~g~~LasGs~DG~V~lwDlrs~-~~l~-~~~h~------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
|+|...-.|++|+.||.|++||+|.. -++. +-.|. +.+.|..++|+. ++.++++.+.|..+++
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS---d~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS---DARYLASCGTDDRIRV 272 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc---cchhhhhccCccceEE
Confidence 99985667889999999999999853 2322 22221 345789999984 6777777888999999
Q ss_pred EeCCCCce
Q 005325 308 WDPETGES 315 (702)
Q Consensus 308 Wd~~tg~~ 315 (702)
|+..+|..
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99987753
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.4e-16 Score=178.74 Aligned_cols=243 Identities=12% Similarity=0.144 Sum_probs=182.3
Q ss_pred CCCceeEEEECCCCCE---EEEEEecCCcEEEEEcCCc--------eEEEeeecCCceEEEEEEcCCC-CEEEEEECCCe
Q 005325 61 FETATTKIRETPDGEF---LIVSGIYPPQVKVYELRQL--------SLKFERHLDSEIINFEVLADDY-SKLAFLCADRS 128 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~---llatGs~dg~I~vwdl~~~--------~~~~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~ 128 (702)
-...-++++|++-|.. |||.|..||.|.+||.... ...+..|. +.|.. +-|++.. +.||+|+.||.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-G~V~g-LDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-GPVLG-LDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC-Cceee-eeccccCCceeeccCCCCc
Confidence 3455678999988877 6999999999999998773 12445563 43444 5555554 58999999999
Q ss_pred EEEEecCCceEEEecCC--CccceEEecCCCc----EEEEecCCCEEEEECCCCeEEEEeecCCC--CeEEEEEcCCC-C
Q 005325 129 ISLHAKYGKHYSLRIPR--MGRDMAYNSWSCD----LLCAASSPELYRINLEQGRFLSSLNTQSP--ALNVVSRSKLH-G 199 (702)
Q Consensus 129 I~iw~~~g~~~~~~i~~--~~~~l~~~~~s~~----llv~s~d~~V~vwdl~~g~~~~~l~~h~~--~V~~l~~sp~~-~ 199 (702)
|.|||+......+..+. ....|.+..|+.. |++++.++.+.+||++..+.+-.+..|.. .+..|+|+|++ .
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 99999885332222221 2225666666655 56677778999999999888777766654 47899999998 5
Q ss_pred EEEEEEcC---CeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 005325 200 LIACGGED---GAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 200 llasgs~D---G~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h 275 (702)
.|++++.| -.|.+||+|. ..++.++.+| ...|.+|.|++.+..+|++++.|+.|.+|+..+++.+.....
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H------~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGH------QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccc------ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 66666664 4699999995 4577788777 799999999998568999999999999999999998884444
Q ss_pred cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc
Q 005325 276 MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 276 ~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
. +..+..+.|+| .+-..+.+++-||.|.|+.+.++.
T Consensus 295 ~-~nW~fdv~w~p--r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 Q-GNWCFDVQWCP--RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C-CcceeeeeecC--CCcchhhhheeccceeeeeeecCC
Confidence 2 67999999998 223344445569999999987543
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=8e-13 Score=142.13 Aligned_cols=279 Identities=19% Similarity=0.310 Sum_probs=205.0
Q ss_pred cCCCceeEEEECCCCCEEEEEEec-CCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCC-EEEEEECCCeEEEEecC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIY-PPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYS-KLAFLCADRSISLHAKY 135 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~-dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~-~Las~s~D~~I~iw~~~ 135 (702)
.++..+.+++|+|++.+ +++++. ++.+++|++.. ....+..| ... +..+.+++++. .+++++.|+.|.+|+..
T Consensus 153 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 153 GHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGH-TDP-VSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred cCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccC-CCc-eEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 46778889999999997 666664 99999999986 33344444 333 55555558877 55555899999999766
Q ss_pred -CceEEEecCCCccc-e-EEecCCCcEEEEecCCCEEEEECCCCeE-EEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 136 -GKHYSLRIPRMGRD-M-AYNSWSCDLLCAASSPELYRINLEQGRF-LSSLNTQSPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 136 -g~~~~~~i~~~~~~-l-~~~~~s~~llv~s~d~~V~vwdl~~g~~-~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
+......+..+... + .+.+....+++++.++.+.+|++..... +..+..|...|.++.|+|++..+++++.|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309 (466)
T ss_pred CCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEE
Confidence 33333123222222 3 4556554577788999999999987664 444467888999999999888888899999999
Q ss_pred EEECCCCcceeEEe--cccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 212 CFDMRMRSSAARIN--AVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 212 iWD~~t~~~v~~l~--~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
+||..+........ .+ ...|..+.|.++ +..++++ ..|+.+.+|++........... ...+..+.|.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 380 (466)
T COG2319 310 LWDLETGKLLSSLTLKGH------EGPVSSLSFSPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEG--HSNVLSVSFSP 380 (466)
T ss_pred EEEcCCCceEEEeeeccc------CCceEEEEECCC-CCEEEEeecCCCcEEeeecCCCceeEEecC--CceEEEEEECC
Confidence 99999887766665 44 457999999433 4666666 6889999999998773322222 22388888874
Q ss_pred ccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 289 SINTERPKLI-TTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 289 ~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
...++. +..++.+.+|+.........+..+...+....+.+++..++.++.+..+..|.+..
T Consensus 381 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 381 ----DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 322333 35789999999998888777766337888899999999999999999999998877
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.67 E-value=2.9e-15 Score=156.02 Aligned_cols=236 Identities=12% Similarity=0.129 Sum_probs=176.3
Q ss_pred CCceEEEEEEcCCC-CEEEEEECCCeEEEEecCC-------ceEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECC
Q 005325 104 DSEIINFEVLADDY-SKLAFLCADRSISLHAKYG-------KHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLE 174 (702)
Q Consensus 104 ~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~~~g-------~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~ 174 (702)
...|..+.+.+... +.+|+|..-|.|-+||..+ .++-+.......++.|.|.+.. +++.+.||+|..-|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 44455555554444 4668888899999999941 1111212223448888888776 8999999999999999
Q ss_pred CCeEEEEeec--CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 175 QGRFLSSLNT--QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 175 ~g~~~~~l~~--h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
.+.+-..+.. ....+..+.|+.+...+++|..=|...+||+|+... ...+..| ...|++|+++|-...+||
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh------~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH------KKKITSVALNPVCPWFLA 339 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh------hcccceeecCCCCchhee
Confidence 8876555544 445677888888888888888878999999998664 6666666 579999999998778899
Q ss_pred EEeCCCeEEEEEcCC--Ce--E-EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC----CCceeEEecCC
Q 005325 252 VGSSTGKVLIYDLRS--SY--P-IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE----TGESMTSIEPT 322 (702)
Q Consensus 252 sGs~DG~V~lwDlrs--~~--~-l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~----tg~~l~~i~~h 322 (702)
+++.|++++|||+|. ++ | +....| ..+|.+..|+| +++.+++++.|+.|+|||.. .-.++..|..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~H--rrsV~sAyFSP---s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H- 413 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPH--RRSVNSAYFSP---SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH- 413 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccc--cceeeeeEEcC---CCCceEeeccCCceEEeecccccccCCccceeec-
Confidence 999999999999996 22 3 346777 78999999999 56679999999999999984 3344444432
Q ss_pred CC----c--eeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 323 AG----K--INDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 323 ~~----~--I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+. + .-...|.|+..+|+++..-..|-+|.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 22 2 22356999999999998887777664
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=8.8e-15 Score=150.61 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=203.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------ceE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------LSL----KFERHLDSEIINFEVLADDYSKLAFLCADRSI 129 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I 129 (702)
.++.+.++.|.++..-.+|||+.|..|+||-+.. ..+ .+.+|..+ +.++.|+++|..|++|+.++.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a--VN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA--VNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce--eEEEEEcCCcCeeeecCCCceE
Confidence 6788999999988874499999999999998865 122 34566555 8899999999999999999999
Q ss_pred EEEecC--------C-----c--eEEEecCCC----ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeE
Q 005325 130 SLHAKY--------G-----K--HYSLRIPRM----GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALN 190 (702)
Q Consensus 130 ~iw~~~--------g-----~--~~~~~i~~~----~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~ 190 (702)
.+|-.. . . ....+.... ..++++.+.+..+.+++.++.+++||+..|+.+..+..|...|.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 999655 1 1 111222222 22677777777799999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEec-----ccCCC------------CCCCCeEEEEEcCCCCCEEEEE
Q 005325 191 VVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINA-----VAPAG------------DADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 191 ~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~-----~~~~~------------~~~~~Vtslafspd~g~~LasG 253 (702)
.++|.|.++++++=+.|...+.+.+...+.+..+.. ..... .-..-...++|+|+ |..|++.
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvtP 248 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVTP 248 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-CcEEEcc
Confidence 999999999999999998888887775554433331 00000 01123456889999 8888875
Q ss_pred eC----CCe-----EEEEEcCC-CeEEE-EeeccCCCCeEEEEEeecc------C--------CCCCeEEEeCCCEEEEE
Q 005325 254 SS----TGK-----VLIYDLRS-SYPIR-VKDHMFDSPIVDIKWHQSI------N--------TERPKLITTDNHIVRIW 308 (702)
Q Consensus 254 s~----DG~-----V~lwDlrs-~~~l~-~~~h~~~~~I~sl~fsp~~------~--------~~~~ll~ss~Dg~V~IW 308 (702)
.. .+. .++|+-.. .+|.. +... ..++..+.|+|.+ + .-..+++.+..+.|.||
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvy 326 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVY 326 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEe
Confidence 32 232 34444322 22333 2222 4566777777754 1 12334555667889999
Q ss_pred eCCCCceeEEe-cCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 309 DPETGESMTSI-EPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 309 d~~tg~~l~~i-~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
|..+..++..+ .-|-..|+++||++++..|++.+.||-.
T Consensus 327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 99998887765 4478899999999999999999999843
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=1.4e-13 Score=147.97 Aligned_cols=271 Identities=9% Similarity=0.101 Sum_probs=174.0
Q ss_pred EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC
Q 005325 14 TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR 93 (702)
Q Consensus 14 s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~ 93 (702)
..+++|.+|++... .++.+++.+........++++||+++|++++..++.|.+|++.
T Consensus 9 ~~~~~I~~~~~~~~-----------------------g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 9 PESQQIHVWNLNHE-----------------------GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred CCCCCEEEEEECCC-----------------------CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 55788999999643 1234555566667788899999999966666668899999997
Q ss_pred C-ceEEEeee-cCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC--CceE-EEe-cC--CCccceEEecCCCcEEEEec
Q 005325 94 Q-LSLKFERH-LDSEIINFEVLADDYSKLAFLCA-DRSISLHAKY--GKHY-SLR-IP--RMGRDMAYNSWSCDLLCAAS 164 (702)
Q Consensus 94 ~-~~~~~~~h-~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~--g~~~-~~~-i~--~~~~~l~~~~~s~~llv~s~ 164 (702)
. ..+..... ........+.++++++.|++++. ++.|.+|+.. +... ... ++ .....+.+.+.+..+++++.
T Consensus 66 ~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 66 DDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC
Confidence 3 33322221 11112356778899998877764 8899999875 3211 111 12 22346677777777776665
Q ss_pred -CCCEEEEECCCCeEEEE-----eec-CCCCeEEEEEcCCCCEEEEEEc-CCeEEEEECCC--Cc--ceeEEecccCCCC
Q 005325 165 -SPELYRINLEQGRFLSS-----LNT-QSPALNVVSRSKLHGLIACGGE-DGAVECFDMRM--RS--SAARINAVAPAGD 232 (702)
Q Consensus 165 -d~~V~vwdl~~g~~~~~-----l~~-h~~~V~~l~~sp~~~llasgs~-DG~V~iWD~~t--~~--~v~~l~~~~~~~~ 232 (702)
++.|.+||+.+...+.. ... .......++|+|+++++++++. +++|.+||+.. +. .+..+........
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 47899999976332211 111 1234678999999999888876 89999999973 22 2333332200001
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCCCe-EEEEeecc-CCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRSSY-PIRVKDHM-FDSPIVDIKWHQSINTERPKLITT-DNHIVRIW 308 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs~~-~l~~~~h~-~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IW 308 (702)
+......|.|+|+ +.+|+++.. ++.|.+|++.... .+.+..+. .+.....+.|+| ++.+++++. .+++|.||
T Consensus 226 ~~~~~~~i~~~pd-g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~---dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 226 DTRWAADIHITPD-GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH---SGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CCccceeEEECCC-CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC---CCCEEEEEEccCCcEEEE
Confidence 1123446999999 998888754 7899999996532 22222221 122456789998 555666666 48999999
Q ss_pred eCC
Q 005325 309 DPE 311 (702)
Q Consensus 309 d~~ 311 (702)
+++
T Consensus 302 ~~~ 304 (330)
T PRK11028 302 EID 304 (330)
T ss_pred EEc
Confidence 875
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=5.8e-15 Score=164.66 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=176.5
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--------EEeeecCCceEEEEEEcC-CCCEEEEEECCCeE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--------KFERHLDSEIINFEVLAD-DYSKLAFLCADRSI 129 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--------~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I 129 (702)
|+.+..|+|++|+|....+||.|+++|+|.+||+..... ....| ...++.++|+.. ....+++++.||.|
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccC-CcCeEEEEEeccCCCCceEEEecCCcE
Confidence 456788999999999999999999999999999987332 12223 444566666542 22457778888888
Q ss_pred EEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCC
Q 005325 130 SLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDG 208 (702)
Q Consensus 130 ~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG 208 (702)
..|++...+....... .+.... .-..+ .....+++++|.|.. +.|++|++.|
T Consensus 318 ~~W~~~~l~~P~e~~~-------------------------~~~~~~-~~~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLL-------------------------LESKKH-KGQQS-SKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eeeeccccccchhhcc-------------------------cccccc-ccccc-ccccceeeEeeccCCCceEEEEcCCc
Confidence 8885543222110000 000000 00001 122368899998876 7899999999
Q ss_pred eEEEEECCCCcce--eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CCeEEE-EeeccCCCCeEEE
Q 005325 209 AVECFDMRMRSSA--ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR-SSYPIR-VKDHMFDSPIVDI 284 (702)
Q Consensus 209 ~V~iWD~~t~~~v--~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr-s~~~l~-~~~h~~~~~I~sl 284 (702)
.|.--+-...+.- ..+..+.....|.++|+++.++|- +..++..+.|.+|+||... ...|+. +..+ ...|+++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF-~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~v 447 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF-YPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDV 447 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCC-ccceeeeeccceeEeccccCCCCcchhhhhc--cceeeee
Confidence 9876333221111 112222222344799999999998 6555555559999999988 667776 4444 4569999
Q ss_pred EEeeccCCCCCeEEEe-CCCEEEEEeCCC--CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 285 KWHQSINTERPKLITT-DNHIVRIWDPET--GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t--g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|||+ ..-++++. .+|.|.|||+.. ..++.++..+....+.+.|++.+.+|++|...|.+++|.++.
T Consensus 448 aWSpt---rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPT---RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCc---CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99992 23344444 599999999973 567777777666777788888899999999999999999864
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=152.74 Aligned_cols=226 Identities=20% Similarity=0.270 Sum_probs=164.5
Q ss_pred CEEEEEECCCeEEEEecCC--ceEEEecCCCc-cceEEecC-CCc-EEEEecCCCEEEEECCCCeEEE--EeecCC-CCe
Q 005325 118 SKLAFLCADRSISLHAKYG--KHYSLRIPRMG-RDMAYNSW-SCD-LLCAASSPELYRINLEQGRFLS--SLNTQS-PAL 189 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g--~~~~~~i~~~~-~~l~~~~~-s~~-llv~s~d~~V~vwdl~~g~~~~--~l~~h~-~~V 189 (702)
+.+|++...++|++|+... ....+..+... ..+.+... ++. +++|+.+|+|++||++...... .+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5678888899999998873 44444444433 36666664 444 8899999999999998765543 334455 467
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 190 NVVSRSKLHGLIACGGE----DGAVECFDMRMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~----DG~V~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
+|++.+-.++++++|+. +-.|.+||+|..+. +..+... |...||+|+|+|.+..+|++|+.||.|.|||+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS-----H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES-----HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh-----ccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 88888878899999976 67899999998765 6555543 47999999999998999999999999999999
Q ss_pred CCCe---E-EEEeeccCCCCeEEEEEeeccCCCC--CeEEEeCCCEEEEEeCCCCceeEE--------------------
Q 005325 265 RSSY---P-IRVKDHMFDSPIVDIKWHQSINTER--PKLITTDNHIVRIWDPETGESMTS-------------------- 318 (702)
Q Consensus 265 rs~~---~-l~~~~h~~~~~I~sl~fsp~~~~~~--~ll~ss~Dg~V~IWd~~tg~~l~~-------------------- 318 (702)
.... + +.+..| +..|.++.|+. .. ++.+-+...+..+|++..+.....
T Consensus 196 ~~d~EeDaL~~viN~--~sSI~~igw~~----~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 196 KKDNEEDALLHVINH--GSSIHLIGWLS----KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred CCCcchhhHHHhhcc--cceeeeeeeec----CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 8643 2 235555 67899999984 33 444445566777777755432211
Q ss_pred -----------------------------------------ecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 319 -----------------------------------------IEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 319 -----------------------------------------i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.+ |..-|.+++|...+.++++|++||.+.+|-.+.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 222 333566676767788899999999999998643
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.5e-15 Score=160.62 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=187.3
Q ss_pred ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C-ceEEEecCCCccceEEecCCCc-EEEEecCCCEEEE
Q 005325 95 LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G-KHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRI 171 (702)
Q Consensus 95 ~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g-~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vw 171 (702)
..+.|.+|.+. +.++...+.|.+|++|+.||+|+||.+. | +...+.+....++++|++.+.. +++++.+..+.+.
T Consensus 392 ~~lvyrGHtg~--Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGL--VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCe--EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 45577888655 7888889999999999999999999887 4 3444566667778999887765 4445554455554
Q ss_pred ECCCCe-------------------------------------EEEEeecCCCCeEEEEEcCCCCEEEEEEcC---CeEE
Q 005325 172 NLEQGR-------------------------------------FLSSLNTQSPALNVVSRSKLHGLIACGGED---GAVE 211 (702)
Q Consensus 172 dl~~g~-------------------------------------~~~~l~~h~~~V~~l~~sp~~~llasgs~D---G~V~ 211 (702)
|..-|. -+.....|...|+.|.|+..|.+|++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 432220 012233466789999999999999988764 5688
Q ss_pred EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeecc
Q 005325 212 CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~ 290 (702)
|+++..+....-|... .+.|.++.|+|. ..+|++++. ..|+|||+.....+. +... ...|.+++.||
T Consensus 550 iHQLSK~~sQ~PF~ks------kG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~kwiS~msihp-- 617 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKS------KGLVQRVKFHPS-KPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SKWISSMSIHP-- 617 (733)
T ss_pred EEecccccccCchhhc------CCceeEEEecCC-CceEEEEec-cceEEEehhHHHHHHHHhcC--CeeeeeeeecC--
Confidence 9998866555444443 588999999999 888888665 679999998865443 2222 35789999998
Q ss_pred CCCCCeEEEeCCCEEEEEeCC-CCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 291 NTERPKLITTDNHIVRIWDPE-TGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~-tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
.+.++++++.|+.++.+|+. +.+++.++..|...|++|+||+.-+++++|++|+.|.+|+
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 67889999999999999998 4578899999999999999999999999999999999986
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=9.4e-15 Score=146.32 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=180.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCC--------------ceEEEecCCCcc--ceEEe------cCCCc-EEEEec
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYG--------------KHYSLRIPRMGR--DMAYN------SWSCD-LLCAAS 164 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g--------------~~~~~~i~~~~~--~l~~~------~~s~~-llv~s~ 164 (702)
..-+.+||||+.|++.+.|..+.+|++.. .+..++.+.... +.++. .++.. +++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45567999999999999999999997642 222333333333 22221 12223 455566
Q ss_pred CCCEEEEECCCCeEEEEeec--CCC---CeEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCcceeEEeccc-CCCCCCCCe
Q 005325 165 SPELYRINLEQGRFLSSLNT--QSP---ALNVVSRSKLHGLIACGGEDGAVECFDM-RMRSSAARINAVA-PAGDADQEV 237 (702)
Q Consensus 165 d~~V~vwdl~~g~~~~~l~~--h~~---~V~~l~~sp~~~llasgs~DG~V~iWD~-~t~~~v~~l~~~~-~~~~~~~~V 237 (702)
+.-|++||.-+|+...++.. |.. ...||+|+|+|..|++|-. ..|++||+ |.+.-........ ......+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 67799999999998887755 332 4568999999999888665 89999999 6654332222210 112235789
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC-Cc
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET-GE 314 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g~ 314 (702)
.|++|+|.+...+++|+-..++-||.-....|+. +.+| +..|+.++|++ +++++++++ -+-.|-.||++. ..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh--~gGvThL~~~e---dGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH--GGGVTHLQWCE---DGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc--CCCeeeEEecc---CcCeecccccCCCeEEEEeehhccc
Confidence 9999999856699999999999999988888888 4556 78999999997 677777777 377788999985 77
Q ss_pred eeEEecCCCCceeE---EEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 315 SMTSIEPTAGKIND---VCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 315 ~l~~i~~h~~~I~~---v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
++..+..|...-|. +..-|.+.+|++++.+|.|.+|.+..+|.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 88889888774443 33457899999999999999999988775
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=147.02 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=202.3
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce-------EEEeeecC-CceEEEEEEcCCCCEEEEEECCCeEE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS-------LKFERHLD-SEIINFEVLADDYSKLAFLCADRSIS 130 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~-------~~~~~h~~-~~vv~~~~ls~dg~~Las~s~D~~I~ 130 (702)
.+|.+.|+.|.||.+|++ ||+|+.|-.++||++..+. +.+..|.. +.|.++ .|.....+|.++..+++|.
T Consensus 53 ~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L-~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSL-EFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEE-EEccCCeeEecCCCcceeE
Confidence 368899999999999999 9999999999999987722 23334433 444444 4555568999999999999
Q ss_pred EEecCCceEEEecC-C----CccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEE--eecCCCCeEEEEEcCCC-CEE
Q 005325 131 LHAKYGKHYSLRIP-R----MGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSS--LNTQSPALNVVSRSKLH-GLI 201 (702)
Q Consensus 131 iw~~~g~~~~~~i~-~----~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~--l~~h~~~V~~l~~sp~~-~ll 201 (702)
++++.......-.. . ....+..+|..+.+++.+.++-|.+||..... .+.. +.........+.|+|.. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 99988433222111 1 22255566666668888889999999987654 2221 12223456788899987 788
Q ss_pred EEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE-EEeecc---
Q 005325 202 ACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI-RVKDHM--- 276 (702)
Q Consensus 202 asgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l-~~~~h~--- 276 (702)
++.+..+-+-+||.+... ++...............-.++.|+|+ |.+|++--....-.+||+-+..+. ...+|.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC-CCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 899999999999999643 33332222111111233467889999 888887666666788999986644 455653
Q ss_pred --CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-----C------------------ceeEEecCCCCceeEEEE
Q 005325 277 --FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-----G------------------ESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 277 --~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-----g------------------~~l~~i~~h~~~I~~v~~ 331 (702)
+...|.+++|.. +..+++++++-.|+||.+.. | +.+..+.+|.+-++.|.|
T Consensus 290 Y~N~~T~KS~~F~~----D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 290 YCNIKTIKSMTFID----DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred ceeeeeeeeeeeec----ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 123578889973 44566667888999998742 1 235678899999999999
Q ss_pred EcCCCEEEEEeCCCcEEEEE
Q 005325 332 FKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ 351 (702)
+|...+|++.+-...+.+|.
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999998888888875
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.2e-15 Score=160.71 Aligned_cols=234 Identities=19% Similarity=0.195 Sum_probs=171.6
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
++.++.++.+++|+|.-. . ......++-|..| .|.+.|.|+++++.+++ +.+|+.||+|+
T Consensus 309 lit~sed~~lk~WnLqk~---~---------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKA---K---------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSGGIDGTIR 369 (577)
T ss_pred EEEeccccchhhhhhccc---C---------------CccccceeeeEEEecccCceEEEEecCCceE-EEeeccCceee
Confidence 688889999999999221 0 0112234455555 48999999999999999 99999999999
Q ss_pred EEEcCC------------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE-EEecCC-CccceEEec
Q 005325 89 VYELRQ------------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY-SLRIPR-MGRDMAYNS 154 (702)
Q Consensus 89 vwdl~~------------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~-~~~i~~-~~~~l~~~~ 154 (702)
+|++.. +.-.+.+|++. +..+++|..-..|++|+.|+++++|...+... .+..+. .+..+.+..
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccc--eeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 996542 44578889888 77778888888899999999999998874322 222222 223333333
Q ss_pred CCCc--EEEEecC-CCEEEEECCCCeEEEEeecC-------CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEE
Q 005325 155 WSCD--LLCAASS-PELYRINLEQGRFLSSLNTQ-------SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 155 ~s~~--llv~s~d-~~V~vwdl~~g~~~~~l~~h-------~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l 224 (702)
.+.. ..+++.. +.--+.+.+.+..+..+... ...++-+.++|...+.+++..|+.|+++|..++..+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 3333 2222222 22223355555444444322 235788999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
..| ...|+++++.|+ |.+|++|+.||.|++|.+....++.
T Consensus 528 ~a~------~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 528 VAH------KDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred eec------cceecceeecCC-CceEEeecCCceeehhhccchheee
Confidence 888 689999999999 9999999999999999987765544
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2.5e-14 Score=141.45 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=131.4
Q ss_pred CCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcc---eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 185 QSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSS---AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 185 h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~---v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
+..+++++.|+... ++|.+.|-|-+..|||+.++.. -..|-.| ...|..|+|...+-..||+.+.||.|+
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH------DKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH------DKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec------CcceeEEEeccCccceEEEecCCCcEE
Confidence 45689999999655 8999999999999999998733 3445555 799999999987457899999999999
Q ss_pred EEEcCCCeEEE-E-eeccCCCCeEEEEEeeccCCCCCeEEE-e-CCCEEEEEeCCC-CceeEEecCCCCceeEEEEEcCC
Q 005325 261 IYDLRSSYPIR-V-KDHMFDSPIVDIKWHQSINTERPKLIT-T-DNHIVRIWDPET-GESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 261 lwDlrs~~~l~-~-~~h~~~~~I~sl~fsp~~~~~~~ll~s-s-~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
+||||.-.--. + .+.....|...++|++ .+-+++++ + +...|.|.|++. +.++..+..|.+.||.++|.|.+
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnk---qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNK---QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCc---CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence 99999854222 2 2222256899999997 34444443 3 678899999986 67899999999999999999954
Q ss_pred -CEEEEEeCCCcEEEEEcCCCCC
Q 005325 336 -GLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 336 -~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
..|++|++|.++.+|.++++..
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CceeeecCCcceEEEEecccccc
Confidence 5899999999999999988654
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=6.4e-13 Score=135.75 Aligned_cols=275 Identities=15% Similarity=0.219 Sum_probs=187.1
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec-CCceEEEEEEcCCCCEEEEEECCC--eEEEEecCC--c
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL-DSEIINFEVLADDYSKLAFLCADR--SISLHAKYG--K 137 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~-~~~vv~~~~ls~dg~~Las~s~D~--~I~iw~~~g--~ 137 (702)
..++.+.|+.|... |..|+.+| .++|.......-+.... +..|+..++ +. ..+|..+.+. .+++.+... .
T Consensus 6 ~ti~~~~~Nqd~~~-lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF-SS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 6 PTINFIGFNQDSTL-LSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF-SS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred cceeeeeeccceeE-EEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec-cc--ceeEEEecCCCceEEEEEcccCce
Confidence 45677778888887 88888776 46787776332111111 223344443 32 5666665543 477766652 3
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecC---CCCeEEEEEcCCCCEEEEEE--cCCeEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQ---SPALNVVSRSKLHGLIACGG--EDGAVEC 212 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h---~~~V~~l~~sp~~~llasgs--~DG~V~i 212 (702)
.+.+.+|.. +.....+..-+++.-...||+||+.+.+.+.++..- ...+.++++++.+.++|.-+ ..|.|.+
T Consensus 81 ICe~~fpt~---IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 81 ICEIFFPTS---ILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEEecCCc---eEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 334444443 444444555455555566999999999999887654 34566666666667887643 3699999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe-EEEEEcCCCeEEE-EeeccCCCCeEEEEEeecc
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK-VLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~-V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~ 290 (702)
||+.+-+++..+..| .++|-||+|+++ |.+||+++..|+ |+||.+.+++.+. +..-.+...|.+|+|+|
T Consensus 158 ~d~~nl~~v~~I~aH------~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-- 228 (391)
T KOG2110|consen 158 FDTINLQPVNTINAH------KGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-- 228 (391)
T ss_pred EEcccceeeeEEEec------CCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC--
Confidence 999999999999998 899999999999 999999999997 6899999998877 43333456799999998
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCc-----------e--------------------------eEEecCCCCce-eEEEEE
Q 005325 291 NTERPKLITTDNHIVRIWDPETGE-----------S--------------------------MTSIEPTAGKI-NDVCVF 332 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~-----------~--------------------------l~~i~~h~~~I-~~v~~~ 332 (702)
+...|.++++.++|+||.+..-. . +.......+.. +.+.+.
T Consensus 229 -ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~ 307 (391)
T KOG2110|consen 229 -DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLS 307 (391)
T ss_pred -CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEee
Confidence 44555566689999999875311 0 00011111111 223344
Q ss_pred --cCCCEEEEEeCCCcEEEEEcCCC
Q 005325 333 --KDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 333 --p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
+....+.+++.||.++.|.+|.-
T Consensus 308 ~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 308 SIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred ccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 46788999999999999999975
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=2.8e-14 Score=146.21 Aligned_cols=211 Identities=12% Similarity=0.158 Sum_probs=163.0
Q ss_pred EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe
Q 005325 98 KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR 177 (702)
Q Consensus 98 ~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~ 177 (702)
.+.+| .+.+.+..|.+.+...||+|+.|.+|.||.+....... .--.
T Consensus 76 ~v~GH-t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------------------------~lte 122 (472)
T KOG0303|consen 76 LVCGH-TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------------------------DLTE 122 (472)
T ss_pred CccCc-cccccccccCccCCceeecCCCCceEEEEECCCccccc--------------------------------Cccc
Confidence 45566 66688888888888899999999999999765322111 1114
Q ss_pred EEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 178 FLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 178 ~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
.+..+.+|...|.-|+|+|.- +.|++++.|.+|.+||+.++..+-++. | ...|+++.|+.+ |.+|++.+.|
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-h------pd~i~S~sfn~d-Gs~l~TtckD 194 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-H------PDMVYSMSFNRD-GSLLCTTCKD 194 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-C------CCeEEEEEeccC-Cceeeeeccc
Confidence 567889999999999999987 899999999999999999999888887 4 589999999999 9999999999
Q ss_pred CeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCC---ceeEEecCCCCceeE
Q 005325 257 GKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETG---ESMTSIEPTAGKIND 328 (702)
Q Consensus 257 G~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg---~~l~~i~~h~~~I~~ 328 (702)
..|+|||.|+++++.. ..|. +..-..+.|.. ++.+++++ +++.+-+||..+- -.+..+.. +..|.-
T Consensus 195 KkvRv~dpr~~~~v~e~~~he-G~k~~Raifl~----~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~ 268 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHE-GAKPARAIFLA----SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLL 268 (472)
T ss_pred ceeEEEcCCCCcEeeeccccc-CCCcceeEEec----cCceeeeccccccccceeccCcccccCcceeEEecc-CCceEE
Confidence 9999999999999884 4664 44445566763 45577766 4899999998763 23445555 444444
Q ss_pred EEEEcCCCEEEEEe-CCCcEEEEEcCCC
Q 005325 329 VCVFKDSGLLLLAL-DCSQIPSYFIPDL 355 (702)
Q Consensus 329 v~~~p~~~~l~~a~-~d~~I~~~~ip~l 355 (702)
--|.|+..++.+++ .|+.|+.|-+..-
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44677888887776 5778888877654
No 177
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=144.18 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=153.5
Q ss_pred cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 148 RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 148 ~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.++.|++|+..|++|+.+|.|.+||+.|...-+.+..|..+|+|++|+++|+.|+|+|.|..|.+||+..+.+++.+...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 36667777777777777777778888888888889999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ecc-CCCCeEEEEEeeccCCCCCeEEEeCCCE
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK--DHM-FDSPIVDIKWHQSINTERPKLITTDNHI 304 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~--~h~-~~~~I~sl~fsp~~~~~~~ll~ss~Dg~ 304 (702)
++|+.+.|+|.+-+.+++.-.+-.-.+.++..+....+. +.. ....-.+..|.+ .+.+++++...|.
T Consensus 107 -------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr---~g~yIitGtsKGk 176 (405)
T KOG1273|consen 107 -------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR---RGKYIITGTSKGK 176 (405)
T ss_pred -------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC---CCCEEEEecCcce
Confidence 899999999984455555444554555565543322211 110 011112234665 4666667778999
Q ss_pred EEEEeCCCCceeEEecCCC-CceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 305 VRIWDPETGESMTSIEPTA-GKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 305 V~IWd~~tg~~l~~i~~h~-~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
+.|+|..+-+++.++.-.. ..|.++.++-.+..|++-+.|..|++|.+..+
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 9999999999998877644 68999999999999999999999999998754
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=159.04 Aligned_cols=295 Identities=16% Similarity=0.179 Sum_probs=216.0
Q ss_pred ceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEE--EEEEcCCCCEEEEEECC
Q 005325 52 RVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIIN--FEVLADDYSKLAFLCAD 126 (702)
Q Consensus 52 rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~--~~~ls~dg~~Las~s~D 126 (702)
++.|...+ .|++.|+.|.|...|.. +++|+.|-+|.+||...... .|...+...+.. |+.++.+ ..+++++.|
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~-l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~d 208 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDV-LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRD 208 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCce-eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceecccc
Confidence 33444444 38999999999999999 99999999999999988444 343322333333 3334444 778999999
Q ss_pred CeEEEEecC--CceEE-Eec---CCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeec---CCC---CeEEEE
Q 005325 127 RSISLHAKY--GKHYS-LRI---PRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNT---QSP---ALNVVS 193 (702)
Q Consensus 127 ~~I~iw~~~--g~~~~-~~i---~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~---h~~---~V~~l~ 193 (702)
+.|++-.+. +.... .++ ......++..|.++. +++++.++.+.-+|+.++.....+.. +.. ..+.++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 999986544 32221 122 122236777787777 88999999999999988865544432 333 578899
Q ss_pred EcCCC-CEEEEEEcCCeEEEEECCCCc------ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 005325 194 RSKLH-GLIACGGEDGAVECFDMRMRS------SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 194 ~sp~~-~llasgs~DG~V~iWD~~t~~------~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs 266 (702)
.+|.. +.+++|+.|-.+++||.+.-. .+..+..++...+....|+|++|+.+ +.-|++.-.|-.|+++.-..
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~-~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD-GSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC-ccceeeeecccceEEecccc
Confidence 99987 599999999999999998532 23334333222344578999999988 66677778888999994332
Q ss_pred --C------e---E---EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEE
Q 005325 267 --S------Y---P---IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVF 332 (702)
Q Consensus 267 --~------~---~---l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~ 332 (702)
+ . + ...++|.+...|..+.|.- ....+++.+++-|.|.||+..+++++..+++...-||||.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG--PrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG--PRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeecc--CccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC
Confidence 2 1 1 1167898888899999872 124555556688999999999999999999877799999999
Q ss_pred cCCCEEEEEeCCCcEEEEE
Q 005325 333 KDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 333 p~~~~l~~a~~d~~I~~~~ 351 (702)
|.-++|++++-+..|.+|.
T Consensus 446 P~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred CCCchhhccCCccceeeec
Confidence 9999999999999999994
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=6.7e-13 Score=142.65 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=171.0
Q ss_pred CEEEEEEecCCcEEEEEcCC-ceEEEeeec-CCceEEEEEEcCCCCEEEEEE-CCCeEEEEecC--CceEE---EecCCC
Q 005325 75 EFLIVSGIYPPQVKVYELRQ-LSLKFERHL-DSEIINFEVLADDYSKLAFLC-ADRSISLHAKY--GKHYS---LRIPRM 146 (702)
Q Consensus 75 ~~llatGs~dg~I~vwdl~~-~~~~~~~h~-~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~--g~~~~---~~i~~~ 146 (702)
++++++..+++.|.+|++.+ ..+...... .......+.++|++++|+.++ .++.|.+|+.. +.... ...+..
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 34566667899999999963 222221111 111244567899999886654 47889999875 32221 112223
Q ss_pred ccceEEecCCCcEEEEec-CCCEEEEECCC-Ce---EEEEeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCCCcc
Q 005325 147 GRDMAYNSWSCDLLCAAS-SPELYRINLEQ-GR---FLSSLNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDMRMRSS 220 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~-d~~V~vwdl~~-g~---~~~~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t~~~ 220 (702)
...+.+.+.+..+++++. ++.|.+|++.+ +. .+..+. +...+.+++++|+++++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 346777777777877764 67899999864 32 222222 223567889999997775544 579999999986332
Q ss_pred eeE-----EecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCC--Ce--EEE-Eeecc----CCCCeEEEE
Q 005325 221 AAR-----INAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRS--SY--PIR-VKDHM----FDSPIVDIK 285 (702)
Q Consensus 221 v~~-----l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs--~~--~l~-~~~h~----~~~~I~sl~ 285 (702)
+.. +... .......++|+|+ |.+|++++. ++.|.+||+.. +. .+. +..+. .......+.
T Consensus 161 l~~~~~~~~~~~-----~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 161 LVAQEPAEVTTV-----EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ccccCCCceecC-----CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 211 1111 1245678999999 999888776 99999999973 32 222 11110 011223688
Q ss_pred EeeccCCCCCeEEEe-CCCEEEEEeCCCCc----eeEEecCCCCceeEEEEEcCCCEEEEEeC-CCcEEEEEcC
Q 005325 286 WHQSINTERPKLITT-DNHIVRIWDPETGE----SMTSIEPTAGKINDVCVFKDSGLLLLALD-CSQIPSYFIP 353 (702)
Q Consensus 286 fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~----~l~~i~~h~~~I~~v~~~p~~~~l~~a~~-d~~I~~~~ip 353 (702)
|+| ++.+++++. .++.|.+|++.... .+..+.. ......++++|++..|++++. ++.|.+|.+.
T Consensus 235 ~~p---dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITP---DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECC---CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 998 344455553 47899999986432 3333333 235568899999999998886 7889999774
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=3.2e-14 Score=153.32 Aligned_cols=263 Identities=12% Similarity=0.094 Sum_probs=189.6
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
-|||.|| .+..++.+.||+++.| .++|.+ .|...|+|++||.||+. +|+|
T Consensus 21 kPDGsqL--~lAAg~rlliyD~ndG--------------------------~llqtLKgHKDtVycVAys~dGkr-FASG 71 (1081)
T KOG1538|consen 21 KPDGTQL--ILAAGSRLLVYDTSDG--------------------------TLLQPLKGHKDTVYCVAYAKDGKR-FASG 71 (1081)
T ss_pred CCCCceE--EEecCCEEEEEeCCCc--------------------------ccccccccccceEEEEEEccCCce-eccC
Confidence 4899984 4566788999999998 234444 37788999999999999 9999
Q ss_pred ecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eEEEecCCCccceEEecCCCcE
Q 005325 82 IYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HYSLRIPRMGRDMAYNSWSCDL 159 (702)
Q Consensus 82 s~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~~~~~~l~~~~~s~~l 159 (702)
+.|..|.+|+..- ..+++ .|.+. +.+..|.|-...|++|+-.. .-+|+.... ..+.+......+.+|...+..+
T Consensus 72 ~aDK~VI~W~~klEG~LkY-SH~D~--IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEGILKY-SHNDA--IQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred CCceeEEEecccccceeee-ccCCe--eeEeecCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEE
Confidence 9999999998765 33333 34455 88888999888888887643 557876532 1112222222233444444448
Q ss_pred EEEecCCCEEEEECCCCeE--EEEeecCCCCeEEEEEcCCC-----CEEEEEEcCCeEEEEECCCCcceeEEecccCCCC
Q 005325 160 LCAASSPELYRINLEQGRF--LSSLNTQSPALNVVSRSKLH-----GLIACGGEDGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~--~~~l~~h~~~V~~l~~sp~~-----~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
+++-.+|+|.+-|...... +..--+..++|.+++|+|.. ..+++.....++.++.+. |+.+..-..-
T Consensus 148 alG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L----- 221 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL----- 221 (1081)
T ss_pred EEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC-----
Confidence 8888999998876432222 22223466799999999975 688888888899988876 4444422222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
.....||.+.|+ |.++++|++|+.+.+|- |.|-.+-+.+.. ...|++++.+| ++..+++++.||+|-.|++.
T Consensus 222 -~FdP~CisYf~N-GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~P---NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 222 -NFDPCCISYFTN-GEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKP---NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred -CCCchhheeccC-CcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEcc---CCceEEEEEccCeeehhhhH
Confidence 355679999999 99999999999999996 555555544442 67999999999 67778889999999999873
No 181
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-13 Score=138.10 Aligned_cols=208 Identities=14% Similarity=0.198 Sum_probs=149.9
Q ss_pred ceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecC
Q 005325 106 EIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQ 185 (702)
Q Consensus 106 ~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h 185 (702)
..+..+.+...|..+|+|+.|++|+||+.... ..+-.+....+.|
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~-----------------------------------s~~W~~Ts~Wrah 58 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD-----------------------------------SGTWSCTSSWRAH 58 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCC-----------------------------------CCceEEeeeEEec
Confidence 34677777888888888888888888764211 0112344667889
Q ss_pred CCCeEEEEEcC--CCCEEEEEEcCCeEEEEECCC---------CcceeEEecccCCCCCCCCeEEEEEcCC-CCCEEEEE
Q 005325 186 SPALNVVSRSK--LHGLIACGGEDGAVECFDMRM---------RSSAARINAVAPAGDADQEVTALEFDSN-GGFLMGVG 253 (702)
Q Consensus 186 ~~~V~~l~~sp--~~~llasgs~DG~V~iWD~~t---------~~~v~~l~~~~~~~~~~~~Vtslafspd-~g~~LasG 253 (702)
.+.|..|.|.+ -|+.+|+++.|++|.||.-.. -....++... ...|+.|+|.|. -|..||++
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred CCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------CcceeEEEecchhcceEEEEe
Confidence 99999999974 369999999999999997621 1123344444 789999999984 27789999
Q ss_pred eCCCeEEEEEcCCCeEE------E-Ee-----eccCCCCeEEEEEeeccCCCCCeEEEeCC-----CEEEEEeCCCC---
Q 005325 254 SSTGKVLIYDLRSSYPI------R-VK-----DHMFDSPIVDIKWHQSINTERPKLITTDN-----HIVRIWDPETG--- 313 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~l------~-~~-----~h~~~~~I~sl~fsp~~~~~~~ll~ss~D-----g~V~IWd~~tg--- 313 (702)
+.||.|+||+.-..--+ . +. ...+..+..|+.|+|+.-....+++++++ +.++||....+
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 99999999986542211 1 11 11135678999999865444455555543 47899988653
Q ss_pred -ceeEEecCCCCceeEEEEEcCCC----EEEEEeCCCcEEEEEcCCC
Q 005325 314 -ESMTSIEPTAGKINDVCVFKDSG----LLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 314 -~~l~~i~~h~~~I~~v~~~p~~~----~l~~a~~d~~I~~~~ip~l 355 (702)
..+.++..|..+|++|+|.|+-+ +|++|+.|| |++|.|-..
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 34567789999999999999654 799999999 999988654
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=145.06 Aligned_cols=190 Identities=15% Similarity=0.271 Sum_probs=147.9
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCC
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK--LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp--~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~ 235 (702)
.++++.+.+.|.+||..+++.+..|+++...++.+.|.. ....+.+|+.||+|++||+|+...+..+..... ...
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~---~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ---SGT 118 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC---CCC
Confidence 378888899999999999999999999999999999886 348899999999999999998876666655411 135
Q ss_pred CeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCCeE-EE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 236 EVTALEFDSNGGFLMGVGSS----TGKVLIYDLRSSYP-IR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~----DG~V~lwDlrs~~~-l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
+..|++.+-. +..+++|+. +-.|.+||+|+.+. +. .-.| ...|++|+||| ++.+.+++++.||.|.||
T Consensus 119 ~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH--~DDVT~lrFHP--~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 119 PFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH--NDDVTQLRFHP--SDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred cceEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhc--cCcceeEEecC--CCCCeEEeecccceEEee
Confidence 7788888766 789999864 67899999998775 44 3445 78999999999 444455555679999999
Q ss_pred eCCCC----ceeEEecCCCCceeEEEEEcCC-CEEEEEeCCCcEEEEEcCCCC
Q 005325 309 DPETG----ESMTSIEPTAGKINDVCVFKDS-GLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 309 d~~tg----~~l~~i~~h~~~I~~v~~~p~~-~~l~~a~~d~~I~~~~ip~lg 356 (702)
|+..- .++.+|. |.+.|..+.|+.+. ..|++-+......+|.+-...
T Consensus 194 D~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99742 2344444 48889999999876 347777777777888765543
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=140.96 Aligned_cols=283 Identities=15% Similarity=0.150 Sum_probs=187.1
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.+...++|+.|-.+++ |.+|+..|.|++|.+.+.. ..+..+....+..+..+.. ..|.+-+.|..+.+|+....
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEccCc
Confidence 4678899999998887 5899999999999998832 2344343444455554443 67888999999999998852
Q ss_pred eEEEecCCCccceEEecC-------CC-cEEEE-ecC-CCEEEEECCCCeEEEEe----ecCCCCeEEEEEcCC-C--CE
Q 005325 138 HYSLRIPRMGRDMAYNSW-------SC-DLLCA-ASS-PELYRINLEQGRFLSSL----NTQSPALNVVSRSKL-H--GL 200 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~-------s~-~llv~-s~d-~~V~vwdl~~g~~~~~l----~~h~~~V~~l~~sp~-~--~l 200 (702)
.+.....-....+.|++. .. .++.. +.+ .++.+-|......+... ....+.+.|..+.-. + -+
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 222111111112222211 11 11111 111 11222232221111111 123356777775322 2 46
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecc----cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC--eEE-E-E
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAV----APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS--YPI-R-V 272 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~----~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~--~~l-~-~ 272 (702)
++.|-++|.|.+||+.++..+-.+... .....|..+|.++.|.+. ...=++|+.+-.+..|.+.-. ... . .
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccCcccccce
Confidence 778888999999999987544333322 122346799999999987 677788888999999998743 221 1 1
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
... ..-.|..+..-| ++.+++++ .|+.|+||+.+++.++..+..|.+.|++++|+|+.++++.|+.|.+|..|.
T Consensus 247 ~~l-knpGv~gvrIRp----D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRP----DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EEe-cCCCccceEEcc----CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 111 123577788877 77777665 799999999999999999999999999999999999999999999999996
Q ss_pred c
Q 005325 352 I 352 (702)
Q Consensus 352 i 352 (702)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 4
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.6e-13 Score=138.03 Aligned_cols=247 Identities=14% Similarity=0.171 Sum_probs=168.7
Q ss_pred cCCCceeEEEECCC---CCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005325 60 WFETATTKIRETPD---GEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 60 ~~~~~v~~i~~SpD---G~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~ 134 (702)
++++....++|+-| +.-++|.|++-|.|+|.|+.+ .+-.+.+| ...|..+-..+.+.+++++++.|.+|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRl--- 162 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRL--- 162 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc-CccchhhhcCCCCCcEEEEecCCceEEE---
Confidence 56777778888644 444588888999999999987 33355666 4445555555555567778888877777
Q ss_pred CCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 135 YGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 135 ~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
||+++..++..| .+|.+.|.++.|++++..|++|+.|.+|.
T Consensus 163 ------------------------------------wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 163 ------------------------------------WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred ------------------------------------EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 455555555544 57999999999999999999999999999
Q ss_pred EEECCCCcceeEE------------------eccc----CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-Ce
Q 005325 212 CFDMRMRSSAARI------------------NAVA----PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SY 268 (702)
Q Consensus 212 iWD~~t~~~v~~l------------------~~~~----~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~ 268 (702)
+|++...+....+ ..+. ...-|...|-|+.|- |.++++=+-++.|..|-.-. .+
T Consensus 207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhh
Confidence 9999843311111 1111 113467788888887 67899989999999997621 11
Q ss_pred ----------EEEEeecc--CCCCeEEEEEeeccCCCCCeE-EEeCCCEEEEEeCCCCcee--EEecC--CCCceeEEEE
Q 005325 269 ----------PIRVKDHM--FDSPIVDIKWHQSINTERPKL-ITTDNHIVRIWDPETGESM--TSIEP--TAGKINDVCV 331 (702)
Q Consensus 269 ----------~l~~~~h~--~~~~I~sl~fsp~~~~~~~ll-~ss~Dg~V~IWd~~tg~~l--~~i~~--h~~~I~~v~~ 331 (702)
...+..+. ....|+-|.|.- ..-..+| ++...|.|.+||++...+. .++.. ....|.+.+|
T Consensus 284 ~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~--d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 284 SIHNVKPPESATTILGEFDYPMCDIWFIRFAF--DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhccCCCccceeeeeEeccCccceEEEEEee--cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 11111110 123566666652 1134444 4557999999999976552 22221 1458999999
Q ss_pred EcCCCEEEEEeCCCcEEEEE
Q 005325 332 FKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ 351 (702)
+.++.+|+..++++.|.-|.
T Consensus 362 S~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cccCcEEEEEeCCCcEEEEE
Confidence 99999999999999998875
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.6e-14 Score=154.08 Aligned_cols=252 Identities=12% Similarity=0.115 Sum_probs=178.9
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSIS 130 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~ 130 (702)
+-..++.++|.|-... |++++.++.|++|++.. ..+.|..| ..+ |-++++++++..+.+++.|++|+
T Consensus 293 ~~d~ir~l~~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gP-Vl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGP-VLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred chhhhhhhhcCCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecc-cCc-eEEEEecCCceEEEeeccCceee
Confidence 3456777888888777 89999999999999932 33577778 343 55666788999999999999999
Q ss_pred EEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 131 LHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 131 iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
.|++....... .. +|.. ....++.+|.+.|+.+++++....|++|+.||+|
T Consensus 370 ~w~~p~n~dp~-------------------------ds--~dp~--vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv 420 (577)
T KOG0642|consen 370 CWNLPPNQDPD-------------------------DS--YDPS--VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV 420 (577)
T ss_pred eeccCCCCCcc-------------------------cc--cCcc--hhccceeccccceeeeeecccccceeeecCCceE
Confidence 99765211100 00 1111 1235678999999999999999999999999999
Q ss_pred EEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc------CCCCeEEE
Q 005325 211 ECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM------FDSPIVDI 284 (702)
Q Consensus 211 ~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~------~~~~I~sl 284 (702)
++|++....+ .++.... ....-+++.|-...-.++++...-+.--++|+.....+.+.... ....|..+
T Consensus 421 r~w~~~~~~~-~~f~~~~----e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPK----EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred EeeccCCcCc-cccCCcc----ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 9999987665 3333321 12455667765431123333333344444455444433322211 11347788
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.++| +....+.+..|+.|+++|..+++++.+...|...++++++.|++.+|++++.++.+..|.+
T Consensus 496 Vs~~---~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 496 VSHP---TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred EecC---CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 8987 3334444458999999999999999999999999999999999999999999999999876
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.2e-13 Score=129.87 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=165.9
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC----------ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeE--
Q 005325 111 EVLADDYSKLAFLCADRSISLHAKYG----------KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRF-- 178 (702)
Q Consensus 111 ~~ls~dg~~Las~s~D~~I~iw~~~g----------~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~-- 178 (702)
..++|.+++|+.+..+|.|.|+.+.. ....+....+...+-+.....++++.+.+|.|+-|-......
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~ 95 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESL 95 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhc
Confidence 35778889999999999999997652 111111111112344444446677777779999875432111
Q ss_pred --------EEEeec---CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCC
Q 005325 179 --------LSSLNT---QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGG 247 (702)
Q Consensus 179 --------~~~l~~---h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g 247 (702)
..++.. .-..||++-+.|..+-+++++.|+.++.||+.+++...++..| ...|.++.-... .
T Consensus 96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH------tDYvH~vv~R~~-~ 168 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH------TDYVHSVVGRNA-N 168 (325)
T ss_pred cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC------cceeeeeeeccc-C
Confidence 111111 2247999999998887777789999999999999999999999 789999998555 6
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEee---cc------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEE
Q 005325 248 FLMGVGSSTGKVLIYDLRSSYPIRVKD---HM------FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTS 318 (702)
Q Consensus 248 ~~LasGs~DG~V~lwDlrs~~~l~~~~---h~------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~ 318 (702)
..+++|+.||+|+|||+++++.+.+.. |. .+..|.+++-+ ...++++....+.+|++++.++.+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~------edWlvCGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN------EDWLVCGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc------CceEEecCCCceeEEeccCCCceEE
Confidence 789999999999999999998776322 21 24557777764 4677777777899999999999888
Q ss_pred ecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 319 IEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 319 i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++. .+++..+.|..+ .++++++...+..|.+
T Consensus 243 fpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 243 FPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTL 273 (325)
T ss_pred Eec-ccceeEeeeecc--eEEEeccccceeeeee
Confidence 887 889999988765 5788888888887764
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.5e-13 Score=148.49 Aligned_cols=217 Identities=15% Similarity=0.101 Sum_probs=147.1
Q ss_pred CCCceeEEEECCCCCEEEEEEecC---CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYP---PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~d---g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~g 136 (702)
+...+.+++|||||++| +..+++ +.|.+||+.+........... ......++|||..|++++ .++.+.
T Consensus 202 ~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~------ 273 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLN------ 273 (429)
T ss_pred CCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEE------
Confidence 45668899999999994 544433 479999997743222111111 123457889999888765 455443
Q ss_pred ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEC
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDM 215 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~ 215 (702)
|++||+.++.. ..+..+...+.+++|+|++..|+.++ .+|.+.||++
T Consensus 274 -------------------------------Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 274 -------------------------------IYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred -------------------------------EEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 34467666554 34555666788899999998776655 5788899987
Q ss_pred CCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 216 RMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 216 ~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
.... ....+ .+ .. .+++|+|+ |.+|++++.++ |.+||+.++....+..+ ....++.|+| ++.
T Consensus 322 ~~~~~~~~~l-~~------~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~---~~~~~~~~sP---dG~ 384 (429)
T PRK01742 322 SASGGGASLV-GG------RG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLSST---FLDESPSISP---NGI 384 (429)
T ss_pred ECCCCCeEEe-cC------CC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEecCC---CCCCCceECC---CCC
Confidence 6432 22222 22 12 46789999 99998887765 55699998876544332 1235678998 455
Q ss_pred CeEEEeCCCEEEEEeCC--CCceeEEecCCCCceeEEEEEcC
Q 005325 295 PKLITTDNHIVRIWDPE--TGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 295 ~ll~ss~Dg~V~IWd~~--tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.++.++.++.+.+|.+. +|..+..+..|.+.+.+++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 56666678878888763 58888899888888999999984
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.56 E-value=8e-14 Score=137.78 Aligned_cols=204 Identities=14% Similarity=0.198 Sum_probs=149.5
Q ss_pred ceEEecCCCcEEEEecC--------CCEEEEECCCC---------eEEEEee-cCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 149 DMAYNSWSCDLLCAASS--------PELYRINLEQG---------RFLSSLN-TQSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d--------~~V~vwdl~~g---------~~~~~l~-~h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
.++.+|....+++.... ..+.+|.+... .++..+. .+-+.|+||.|.|++..+++-. |..|
T Consensus 68 ~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i 146 (370)
T KOG1007|consen 68 DLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNI 146 (370)
T ss_pred hhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCce
Confidence 66666666665443322 12567876532 2233333 3456899999999998888765 7899
Q ss_pred EEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 211 ECFDMRMRSS-AARINAVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 211 ~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
.+|++..... +..+.... ...+....++-+|+| .+|..+++ +.|+++..||+|+..........|+..|..+.|+|
T Consensus 147 ~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 147 VLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred EEEEcccCcchheeecccc-cccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 9999997665 55554442 223467789999999 33666666 77899999999987766633222377899999999
Q ss_pred ccCCCCCeEE-EeCCCEEEEEeCCC-CceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcCCCCCC
Q 005325 289 SINTERPKLI-TTDNHIVRIWDPET-GESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 289 ~~~~~~~ll~-ss~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
+..++|+ +++|+.|+|||++. ..+++++++|...|.+|.|+| ...+|++++.|..|..+...+...-
T Consensus 225 ---nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 225 ---NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ---CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 4455555 45899999999985 678999999999999999999 5678999999999999987766543
No 189
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=6.7e-15 Score=153.49 Aligned_cols=272 Identities=18% Similarity=0.271 Sum_probs=192.3
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHA 133 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~ 133 (702)
.|+..+...+.|..++|-.+.+| +|++ ....+.|||-....+.+... ...+..+.+++.. -.|+++
T Consensus 162 ~L~~Ei~v~Etv~Dv~~LHneq~-~AVA-QK~y~yvYD~~GtElHClk~-~~~v~rLeFLPyH-fLL~~~---------- 227 (545)
T KOG1272|consen 162 KLHFEINVMETVRDVTFLHNEQF-FAVA-QKKYVYVYDNNGTELHCLKR-HIRVARLEFLPYH-FLLVAA---------- 227 (545)
T ss_pred eeeeeeehhhhhhhhhhhcchHH-HHhh-hhceEEEecCCCcEEeehhh-cCchhhhcccchh-heeeec----------
Confidence 45556666777888888888777 5554 45677888766544433222 1222333333321 223333
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
+..|-+...|+.+|+.+..+....+.+..++-+|-+.++-+|...|+|.+|
T Consensus 228 -----------------------------~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 228 -----------------------------SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred -----------------------------ccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 334444557899999999999999999999999999999999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCC
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
.+.+..++..+-+| .++|.+|++.++ |.++||.+.|..|+|||+|+...+..... ..+...++|| .
T Consensus 279 SP~skePLvKiLcH------~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~S-----q 344 (545)
T KOG1272|consen 279 SPNSKEPLVKILCH------RGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLS-----Q 344 (545)
T ss_pred CCCCcchHHHHHhc------CCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec--CCCccccccc-----c
Confidence 99999999999999 799999999999 99999999999999999999775543222 3477889998 5
Q ss_pred CCeEEEeCCCEEEEEeCC-CC--ceeEEecCC--CCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCccccc
Q 005325 294 RPKLITTDNHIVRIWDPE-TG--ESMTSIEPT--AGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESM 368 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~-tg--~~l~~i~~h--~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~l 368 (702)
..+|+.+....|.||.=. .+ ..-...-.| .++|.++.|+|-..+|-++.. +-+...-+|--|.
T Consensus 345 kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~-~G~tsilVPGsGe----------- 412 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA-GGITSILVPGSGE----------- 412 (545)
T ss_pred ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc-CCceeEeccCCCC-----------
Confidence 667777777789999642 21 111111112 459999999998886665544 4456666787665
Q ss_pred chhhhcCCccccccCccccCHHHHhhcCCCccc
Q 005325 369 TEELEEGGQTTIYDNYKFLTREDLEKLNLTSLI 401 (702)
Q Consensus 369 teelee~~~~~~yd~ykfvt~~el~~l~l~~li 401 (702)
+....|.+.-|.|+.+..+..+..|+
T Consensus 413 -------PN~Ds~e~nPfetrKQRqE~EVr~LL 438 (545)
T KOG1272|consen 413 -------PNYDSLEDNPFETRKQRQEKEVRSLL 438 (545)
T ss_pred -------CCcchhccCcchhhhHHhHHHHHHHH
Confidence 33345566677777766665555443
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.54 E-value=3.7e-13 Score=138.15 Aligned_cols=236 Identities=14% Similarity=0.188 Sum_probs=164.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
.|...|..++|+|-...+||+|+.|.+|.||.+...-+.... ..+++.+. - ..+.|-
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--tepvv~L~-g-----------H~rrVg--------- 135 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--TEPVVELY-G-----------HQRRVG--------- 135 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--ccceEEEe-e-----------cceeEE---------
Confidence 477889999999988888999999999999999873221110 11111111 1 111111
Q ss_pred EEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 140 SLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 140 ~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
-+.|++...+ |++++.|+.|.+||+.+|..+-++. |.+.|.+++|+-+|.+|++.+.|..|+|||++++
T Consensus 136 ---------~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 136 ---------LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred ---------EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 3456666555 6788889999999999999888887 9999999999999999999999999999999999
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC-CeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS---STGKVLIYDLRS-SYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs---~DG~V~lwDlrs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
+.+..-..|. ...-..+.|-.+ |..+.+|. ++.+|-|||..+ .+|+.+........|.---|.| +.
T Consensus 206 ~~v~e~~~he-----G~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~----dt 275 (472)
T KOG0303|consen 206 TVVSEGVAHE-----GAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDP----DT 275 (472)
T ss_pred cEeeeccccc-----CCCcceeEEecc-CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecC----CC
Confidence 9998886662 234445566667 77666664 478899999876 4455533322244555555555 44
Q ss_pred CeE-EEe-CCCEEEEEeCCCCceeE----EecCCCCceeEEEEEcCCCEEE
Q 005325 295 PKL-ITT-DNHIVRIWDPETGESMT----SIEPTAGKINDVCVFKDSGLLL 339 (702)
Q Consensus 295 ~ll-~ss-~Dg~V~IWd~~tg~~l~----~i~~h~~~I~~v~~~p~~~~l~ 339 (702)
.+| +++ .|+.|+-|.+.+-.++. ++.. ..+-..+.|.|..++=+
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQRG~g~mPKRGl~V 325 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQRGMGFMPKRGLDV 325 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEeccccc-CCccccccccccccccc
Confidence 444 444 79999999998765432 2222 33555677777665433
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-12 Score=150.27 Aligned_cols=263 Identities=20% Similarity=0.226 Sum_probs=174.9
Q ss_pred eecccCCCceeEEEECCCC-CEEEEEEecCCcEEEEEcCCceE-------EEeeecCCceEEEEEEcCCCCEEEEEECCC
Q 005325 56 IQDLWFETATTKIRETPDG-EFLIVSGIYPPQVKVYELRQLSL-------KFERHLDSEIINFEVLADDYSKLAFLCADR 127 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG-~~llatGs~dg~I~vwdl~~~~~-------~~~~h~~~~vv~~~~ls~dg~~Las~s~D~ 127 (702)
-+-.+|...++.++.+++. .+ ++||+.||+|++|++..+.- ...-+....-+..+..-+.+..+|+++.||
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~-FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSL-FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ehhhhccccccceeecCCCCce-EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3445788999999998776 66 99999999999999976211 112221111233333334567788888888
Q ss_pred eEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC-C-CEEEEEE
Q 005325 128 SISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL-H-GLIACGG 205 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~-~-~llasgs 205 (702)
.|.+..+......... + -.+.+-|+.. ....|.+-++... . ..|+.++
T Consensus 1121 ~v~~~~id~~~~~~~~------------------~---~~~ri~n~~~---------~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRV------------------A---TQVRIPNLKK---------DGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred eEEEEEccccccccce------------------e---eeeecccccC---------CCceEEeecccccccceeEEEEE
Confidence 8887655421000000 0 0001111110 1111222233221 2 3788888
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIK 285 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~ 285 (702)
..+.|..||+++...+.++.... ..+.|++++.+|. +.++++|++.|.+.+||+|-+.++....|....+|..+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~----~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQL----RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVW 1245 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCc----cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEE
Confidence 99999999999988777766552 2489999999999 999999999999999999999999876676678999999
Q ss_pred EeeccCCCCCeEEEe--CCCEEEEEeCCCCceeEEecC-------------------CCCceeEEEEEcCCCEEEEEeCC
Q 005325 286 WHQSINTERPKLITT--DNHIVRIWDPETGESMTSIEP-------------------TAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 286 fsp~~~~~~~ll~ss--~Dg~V~IWd~~tg~~l~~i~~-------------------h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
.+|.+......++++ ..+-|.+|++.+|..-+.+-. +.-.....++...++++++++.|
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 998552224444444 478899999998865444322 12233345566678899999999
Q ss_pred CcEEEEEcCC
Q 005325 345 SQIPSYFIPD 354 (702)
Q Consensus 345 ~~I~~~~ip~ 354 (702)
..|+.|..+.
T Consensus 1326 ~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1326 MKIRKWDPTR 1335 (1431)
T ss_pred cceeeccCCC
Confidence 9999987654
No 192
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.54 E-value=1.1e-13 Score=139.26 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=149.2
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
+++++.-|.|+++|+.++++...+.+|...|+.|.++|.. +++++||.|.+|++|++++..++..|.+. .+|...|
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~---egHrdeV 184 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV---EGHRDEV 184 (385)
T ss_pred EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc---ccccCcE
Confidence 7778888899999999999999999999999999999987 89999999999999999999999998776 4678999
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe------------------E-----EEE----eeccCCCCeEEEEEeecc
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSY------------------P-----IRV----KDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~------------------~-----l~~----~~h~~~~~I~sl~fsp~~ 290 (702)
.++.|+++ |.+|++++.|.+|++|++...+ | ..+ ..-.|..+|-|+.|.
T Consensus 185 LSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--- 260 (385)
T KOG1034|consen 185 LSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--- 260 (385)
T ss_pred EEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence 99999999 9999999999999999997311 0 000 111135567777776
Q ss_pred CCCCCeEEEeCCCEEEEEeCC-CCce-------------eEEecCCCCceeE--EEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 291 NTERPKLITTDNHIVRIWDPE-TGES-------------MTSIEPTAGKIND--VCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~-tg~~-------------l~~i~~h~~~I~~--v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+..+|.-+-++.|..|... -++. +..+......|+- .+|.|-..+|+.++..|.+++|.+..
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 5566665668899999882 1222 2233333344444 44556778999999999999999876
Q ss_pred CCC
Q 005325 355 LGP 357 (702)
Q Consensus 355 lg~ 357 (702)
..|
T Consensus 339 ~ep 341 (385)
T KOG1034|consen 339 NEP 341 (385)
T ss_pred CCC
Confidence 544
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=7.6e-12 Score=140.24 Aligned_cols=307 Identities=16% Similarity=0.156 Sum_probs=196.1
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCC--EEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGE--FLI 78 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~--~ll 78 (702)
.|+|+. .|-+...+.|+||.+..| +.+..+ ++...++.+.+.|... ..+
T Consensus 24 fSnD~k--~l~~~~~~~V~VyS~~Tg--------------------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~ 75 (792)
T KOG1963|consen 24 FSNDAK--FLFLCTGNFVKVYSTATG--------------------------ECITSLEDHTAPLTSVIVLPSSENANYL 75 (792)
T ss_pred cccCCc--EEEEeeCCEEEEEecchH--------------------------hhhhhcccccCccceeeecCCCccceEE
Confidence 468888 477788999999999998 111112 2345566666665544 336
Q ss_pred EEEecCCcEEEEEcCCceE--EEeeecCCceEEEEE---EcCCCCEEEEEEC-CCeEEE---EecCCceEEEecCC----
Q 005325 79 VSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEV---LADDYSKLAFLCA-DRSISL---HAKYGKHYSLRIPR---- 145 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~---ls~dg~~Las~s~-D~~I~i---w~~~g~~~~~~i~~---- 145 (702)
.+.+.+|.|++||.....+ .+..+ .++..... +-.. ..++..+. |..+.. -+..+......++.
T Consensus 76 ~~~sl~G~I~vwd~~~~~Llkt~~~~--~~v~~~~~~~~~a~~-s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~ 152 (792)
T KOG1963|consen 76 IVCSLDGTIRVWDWSDGELLKTFDNN--LPVHALVYKPAQADI-SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA 152 (792)
T ss_pred EEEecCccEEEecCCCcEEEEEEecC--CceeEEEechhHhCc-cceeEeecccceeeeecccccccceeeeEeeecccc
Confidence 7889999999999988444 23322 22222221 0011 11221221 111111 01111111111111
Q ss_pred ---------CccceEEecCCCcEEEEecCCCEEEEECCCCeEEE-Ee---ecCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 146 ---------MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS-SL---NTQSPALNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 146 ---------~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~-~l---~~h~~~V~~l~~sp~~~llasgs~DG~V~i 212 (702)
...++.+++ +..+........+++|+..++.... .. ..|.-.++|.+++|.++++|+|..||.|.+
T Consensus 153 ~~d~~~~~~~~~~I~~~~-~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 153 KGDFLKEHQEPKSIVDNN-SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred chhhhhhhcCCccEEEcC-CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 112333333 3344455556678888877754111 11 225556899999999999999999999999
Q ss_pred EECCC--C--cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 213 FDMRM--R--SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 213 WD~~t--~--~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
|.--. . .....+.-| ...|++++|+++ |.+|++|+..|.+.+|.+.++++..+..- +++|..+.++|
T Consensus 232 w~d~~~~~~~~t~t~lHWH------~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL--gs~I~~i~vS~ 302 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWH------HDEVNSLSFSSD-GAYLLSGGREGVLVLWQLETGKKQFLPRL--GSPILHIVVSP 302 (792)
T ss_pred EeccccccccccceEEEec------ccccceeEEecC-CceEeecccceEEEEEeecCCCccccccc--CCeeEEEEEcC
Confidence 96432 2 233444444 689999999999 99999999999999999999986656555 78999999998
Q ss_pred ccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---C--------CCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 289 SINTERPKLITTDNHIVRIWDPETGESMTSIEP---T--------AGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 289 ~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h--------~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++....+...|+.|.+-...+.....+|.+ . .+-.+.+++.|..+.++..+..+.|..|.+
T Consensus 303 ---ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 303 ---DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred ---CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 556666677899999998876555444432 1 223456788887788888888888887764
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.2e-12 Score=140.93 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=199.1
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCC------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQ------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.++|.++||++++ +|+|..||+|.+|.-.. ....+..|.+. +....|+++|.+|++|+..+.+.+|.....
T Consensus 207 ~~t~~~~spn~~~-~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~--V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 207 NITCVALSPNERY-LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE--VNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cceeEEeccccce-EEEeccCCcEEEEeccccccccccceEEEecccc--cceeEEecCCceEeecccceEEEEEeecCC
Confidence 3799999999999 99999999999996433 22356667566 788889999999999999999999988844
Q ss_pred eEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-----------CCCCeEEEEEcCCCCEEEE
Q 005325 138 HYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-----------QSPALNVVSRSKLHGLIAC 203 (702)
Q Consensus 138 ~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-----------h~~~V~~l~~sp~~~llas 203 (702)
. +.-+|+-+. .+.+.+.+....+...|+.|.+....+.....++.+ ..+-.+.++++|.-+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 4 444566555 555666666678888899999987655444333322 1334677889997788888
Q ss_pred EEcCCeEEEEECCCCcceeEEecccC----CC-CCCCCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCCe
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAP----AG-DADQEVTALEFDSNGGFLMGVGS--------STG--KVLIYDLRSSY 268 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~----~~-~~~~~Vtslafspd~g~~LasGs--------~DG--~V~lwDlrs~~ 268 (702)
.+..|.|.+||+-+.+.+..+..... .. .+...|++++.+-. |.+++|+- .|| .+++|-.....
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 88999999999998887766654311 11 33467889999998 99999864 233 57788655422
Q ss_pred ---EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC----------ceeEEecCCCCceeEEEEEcC
Q 005325 269 ---PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG----------ESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 269 ---~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg----------~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.+. .....|+..+...+|.+.. .....++++.|+.++||-+... .+...-..|..+++.+||+.+
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~-rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPT-RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCc-ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 122 2222235566666665422 1225666668999999998421 111111237889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 005325 335 SGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 335 ~~~l~~a~~d~~I~~~~ip~ 354 (702)
|. +++++.+..|.+|....
T Consensus 521 Gs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred Cc-EEEEecCCEEEEecCCC
Confidence 85 66677778898886443
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=6.8e-12 Score=126.20 Aligned_cols=291 Identities=13% Similarity=0.111 Sum_probs=193.4
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEE
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLH 132 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw 132 (702)
++.|-|..=..|.-|.|+.|.-++|.....++.|.+|++.+......-..+........+||||+.| .+...+-.|.+|
T Consensus 40 q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 40 QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 4455555556677899999999988888888999999999855444333344447778899999666 455668999999
Q ss_pred ecC-CceEEEecCCCcc-ceEEecCCCcEEEEec------------------------------------CCCEEEEECC
Q 005325 133 AKY-GKHYSLRIPRMGR-DMAYNSWSCDLLCAAS------------------------------------SPELYRINLE 174 (702)
Q Consensus 133 ~~~-g~~~~~~i~~~~~-~l~~~~~s~~llv~s~------------------------------------d~~V~vwdl~ 174 (702)
... ...+-+..|+.+. .+++++......+++. ++-+.+||.-
T Consensus 120 SL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 120 SLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred EeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence 887 3444455565544 5666665544333322 1224445422
Q ss_pred CCeEEEEeecCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEeccc-------------------------
Q 005325 175 QGRFLSSLNTQS-PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVA------------------------- 228 (702)
Q Consensus 175 ~g~~~~~l~~h~-~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~------------------------- 228 (702)
-.-.+.. -|. -.+..++|+|.+++|++|+.|+.+++.+--+-+.+..+-...
T Consensus 200 Leykv~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 200 LEYKVYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred hhheeee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 1111111 122 368899999999999999999999887654433222111100
Q ss_pred -----------------------------------CCCCCCCCeEEEEEcCCCCCEEEEEeCC--CeEEEEEcCCCeEEE
Q 005325 229 -----------------------------------PAGDADQEVTALEFDSNGGFLMGVGSST--GKVLIYDLRSSYPIR 271 (702)
Q Consensus 229 -----------------------------------~~~~~~~~Vtslafspd~g~~LasGs~D--G~V~lwDlrs~~~l~ 271 (702)
...+....+.-++|++| ..++++-... +.+-|||++.-+...
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD-STYAATRNDKYPNALWLWDLQNLKLHA 356 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC-ceEEeeecCCCCceEEEEechhhhhhh
Confidence 00122456677999999 8888875543 679999999877655
Q ss_pred EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 272 VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 272 ~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+..+ ..||....|+| ....++++.....+.+|...-...+ ..+...-.|.+++|+-.+..++.++.|.--.. .
T Consensus 357 vLiQ--k~piraf~WdP---~~prL~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a-~ 429 (447)
T KOG4497|consen 357 VLIQ--KHPIRAFEWDP---GRPRLVVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVA-I 429 (447)
T ss_pred hhhh--ccceeEEEeCC---CCceEEEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcCCceEEE-E
Confidence 4444 45999999999 4556777767778999988753333 34443568999999999999999888864433 4
Q ss_pred cCC
Q 005325 352 IPD 354 (702)
Q Consensus 352 ip~ 354 (702)
++.
T Consensus 430 ve~ 432 (447)
T KOG4497|consen 430 VED 432 (447)
T ss_pred ecC
Confidence 444
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=5.5e-13 Score=130.57 Aligned_cols=263 Identities=14% Similarity=0.223 Sum_probs=172.9
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+|..+..+-|++|.+.+- +++|.|-. .+...++.+..-|++. +.|-+.|+.+.+
T Consensus 28 L~sg~~~G~V~~w~lqt~-r~~~~~r~-----------------------~g~~~it~lq~~p~d~--l~tqgRd~~L~l 81 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTE-RDLPLIRL-----------------------FGRLFITNLQSIPNDS--LDTQGRDPLLIL 81 (323)
T ss_pred hhcccccceEEEEEeecC-ccchhhhh-----------------------hccceeeceeecCCcc--hhhcCCCceEEE
Confidence 688888999999999998 88887731 2334567777778765 478889999999
Q ss_pred EEcCCceEEEeeecCCceEEEEEEc--CCCC---EEEEEECCCeEEEEecC-CceEEEecCC------CccceEEe-cCC
Q 005325 90 YELRQLSLKFERHLDSEIINFEVLA--DDYS---KLAFLCADRSISLHAKY-GKHYSLRIPR------MGRDMAYN-SWS 156 (702)
Q Consensus 90 wdl~~~~~~~~~h~~~~vv~~~~ls--~dg~---~Las~s~D~~I~iw~~~-g~~~~~~i~~------~~~~l~~~-~~s 156 (702)
|++...........-..-+.||-++ +.++ .++..-..+.=.++-.. +....+.++. .+..+++. +..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9998733211111000012333222 1111 11111111111122122 2333344432 22233333 122
Q ss_pred Cc----EEEEecCCCEEEEECCCC----------eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC--cc
Q 005325 157 CD----LLCAASSPELYRINLEQG----------RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR--SS 220 (702)
Q Consensus 157 ~~----llv~s~d~~V~vwdl~~g----------~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~--~~ 220 (702)
+. ++++-.+++|.+||+.++ +.+.....|..+|.++.+.+.-..=++|+.+-.+..|.+.-. .+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 21 566677899999999998 334445668899999999987777788888888999988732 21
Q ss_pred --eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 221 --AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 221 --v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
-..+... +..|..+.+-|| +..+|+++.|+.|+||..++..|+. ++-| ...|++++|+| +.+.++
T Consensus 242 q~~~e~~lk------npGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfsp---d~~lmA 309 (323)
T KOG0322|consen 242 QIRKEITLK------NPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSP---DCELMA 309 (323)
T ss_pred cccceEEec------CCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCC---CCchhh
Confidence 1222222 467899999999 9999999999999999999999998 5666 68999999998 335555
Q ss_pred EEeCCCEEEEEeC
Q 005325 298 ITTDNHIVRIWDP 310 (702)
Q Consensus 298 ~ss~Dg~V~IWd~ 310 (702)
+++.|..|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 6668999999986
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.3e-12 Score=145.80 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=161.2
Q ss_pred CCceeEEEE-CCCCCEEEEEEecCCcEEEEEcCCce-----E--EE---eeec---CCceEEEEEEcCCCCEEEEEECCC
Q 005325 62 ETATTKIRE-TPDGEFLIVSGIYPPQVKVYELRQLS-----L--KF---ERHL---DSEIINFEVLADDYSKLAFLCADR 127 (702)
Q Consensus 62 ~~~v~~i~~-SpDG~~llatGs~dg~I~vwdl~~~~-----~--~~---~~h~---~~~vv~~~~ls~dg~~Las~s~D~ 127 (702)
+..|+.+.+ +.+..-++.+|+.||.|+||+-.... + .+ ..+. .....-+.|.. ...+|++++.-+
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCee
Confidence 355666665 44444558999999999999754311 1 11 1110 11112233333 345666666689
Q ss_pred eEEEEecCCceEEEecCCCcc----ceEEecCCCc-EEEEecCCCEEEEECCCC---eEEEEeecCCCC--eEEEEEcCC
Q 005325 128 SISLHAKYGKHYSLRIPRMGR----DMAYNSWSCD-LLCAASSPELYRINLEQG---RFLSSLNTQSPA--LNVVSRSKL 197 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~~~~~----~l~~~~~s~~-llv~s~d~~V~vwdl~~g---~~~~~l~~h~~~--V~~l~~sp~ 197 (702)
.|+|||.........+|.... .+......++ +++|..||.|.+||...- ..+..+..|... |..+.+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 999999986655555554433 3333334444 677778999999997643 356677788876 999999988
Q ss_pred C-CEEEEEEcCCeEEEEECCCCcceeE--EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE--
Q 005325 198 H-GLIACGGEDGAVECFDMRMRSSAAR--INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-- 272 (702)
Q Consensus 198 ~-~llasgs~DG~V~iWD~~t~~~v~~--l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-- 272 (702)
| .-|++|+.||.|++||+|....... +..+. ...+.+|+|..+++ ...+|+|+. +.|.||++.......+
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEH-APIIASGSA-QLIKIYSLSGEQLNIIKY 1342 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccC-CCeeeecCc-ceEEEEecChhhhccccc
Confidence 7 5699999999999999997533332 33321 11235999999999 999999999 9999999875443222
Q ss_pred ----eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 273 ----KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 273 ----~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
.++ .-.++.|++||| ..-.+++++.|.+|.||.....
T Consensus 1343 n~~F~~q-~~gs~scL~FHP---~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1343 NPGFMGQ-RIGSVSCLAFHP---HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CcccccC-cCCCcceeeecc---hhHhhhhccCCceEEEeecCCc
Confidence 222 234679999998 2233444557999999987654
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=9.1e-14 Score=153.49 Aligned_cols=241 Identities=17% Similarity=0.219 Sum_probs=166.3
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|-.+|.|+.|...|.| ++||+.|..|+||...+ .-..+.+| .+.+.++. .+.+...+++++.|..|++
T Consensus 188 gH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdla-vs~~n~~iaaaS~D~vIrv------ 258 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLASCRGH-SGDITDLA-VSSNNTMIAAASNDKVIRV------ 258 (1113)
T ss_pred hhhhheeeeeeccccce-EeecCccceeeeeeccchhhhccCCCC-ccccchhc-cchhhhhhhhcccCceEEE------
Confidence 46688999999999999 89999999999999777 22345556 44455554 3434466677777776666
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
|-+.++..+..+.+|++.|++|+|+|-. +.+.||++++||.+-
T Consensus 259 ---------------------------------Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~ 301 (1113)
T KOG0644|consen 259 ---------------------------------WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL 301 (1113)
T ss_pred ---------------------------------EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc
Confidence 6777888888999999999999999964 778899999999881
Q ss_pred Ccc--------------eeEEeccc----------CCCCCCCCeEEEEEcCCCCCEEEEEeC-----------CCeEEEE
Q 005325 218 RSS--------------AARINAVA----------PAGDADQEVTALEFDSNGGFLMGVGSS-----------TGKVLIY 262 (702)
Q Consensus 218 ~~~--------------v~~l~~~~----------~~~~~~~~Vtslafspd~g~~LasGs~-----------DG~V~lw 262 (702)
.-. +..+.... ........+.+++|... ...++++++ +-.+++|
T Consensus 302 ~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 302 EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc-ceEEEeccccccccceeeeeeeEeeee
Confidence 111 11111000 00111223344555544 444444442 3446778
Q ss_pred EcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 263 DLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 263 Dlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
++-++..++ ..+| ..++..+.+|| -+..+.. ++-||.+.|||+-.|.++....-....+.+..|++++..+++
T Consensus 381 nl~~g~l~H~l~gh--sd~~yvLd~Hp---fn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGH--SDEVYVLDVHP---FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhccc--ccceeeeeecC---CCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence 888777666 4555 66889999998 2333433 446999999999988877655432556777789999988888
Q ss_pred EeCCCcEEEEEc
Q 005325 341 ALDCSQIPSYFI 352 (702)
Q Consensus 341 a~~d~~I~~~~i 352 (702)
..+.++++++-.
T Consensus 456 sd~hgql~i~g~ 467 (1113)
T KOG0644|consen 456 SDDHGQLYILGT 467 (1113)
T ss_pred CCCCCceEEecc
Confidence 888888877643
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=133.22 Aligned_cols=250 Identities=13% Similarity=0.096 Sum_probs=177.9
Q ss_pred eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eE----EEec---CC--CccceEEecCCCcEEEEecCCCEE
Q 005325 100 ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HY----SLRI---PR--MGRDMAYNSWSCDLLCAASSPELY 169 (702)
Q Consensus 100 ~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~----~~~i---~~--~~~~l~~~~~s~~llv~s~d~~V~ 169 (702)
..|+.+ +..+-||.++.+|++++.|..+.+|++... +. .+.+ |+ ...++.|...+..+++++.+++|.
T Consensus 53 ~~H~GC--iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 53 REHTGC--INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhccc--cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 456555 777778888999999999999999987631 11 1111 11 112778888888899999999999
Q ss_pred EEECCCCeEEEEeec--CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCC
Q 005325 170 RINLEQGRFLSSLNT--QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGG 247 (702)
Q Consensus 170 vwdl~~g~~~~~l~~--h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g 247 (702)
.-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+....-..+-+.. +......++.|+|...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A---N~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA---NSGKNFYTAEFHPETP 207 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec---CCCccceeeeecCCCc
Confidence 999999988776643 23489999999999999999999999999999766222222221 1246788999999867
Q ss_pred CEEEEEeCCCeEEEEEcCCCe-EEE----EeeccC-CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC
Q 005325 248 FLMGVGSSTGKVLIYDLRSSY-PIR----VKDHMF-DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 248 ~~LasGs~DG~V~lwDlrs~~-~l~----~~~h~~-~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
.+|++.+..+-+.|||+|... ++. .++.+. ...-.++.|+| ++.++++--....-.+||+-+..+..--..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~---~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP---SGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC---CCCeehhhhccCCCEEeeeecccceeEecc
Confidence 889999999999999999754 333 122111 12236788997 455666554445555788776443322222
Q ss_pred CC-------CceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005325 322 TA-------GKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 322 h~-------~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
|. ..|.++||..+-. +++++++-.|++|.||.-..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccc
Confidence 22 2566788877655 999999999999999975443
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.7e-12 Score=130.31 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=180.6
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEe-cCCcEEEEEcCCceEEE------eeecCCceEEEEEEcCCCCEEEEEECCCe
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGI-YPPQVKVYELRQLSLKF------ERHLDSEIINFEVLADDYSKLAFLCADRS 128 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs-~dg~I~vwdl~~~~~~~------~~h~~~~vv~~~~ls~dg~~Las~s~D~~ 128 (702)
.+.+.-...++.++|.-|++.=+..+. .+-.+..+.+....+.- ..+.....+.-.... ...|++|-.+|.
T Consensus 49 ~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~ 126 (412)
T KOG3881|consen 49 NSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGN 126 (412)
T ss_pred hcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCc
Confidence 333444456777888777765444444 55556555555421111 111111112222222 267889999999
Q ss_pred EEEEecC-Cc-----eEEEecCCCccceEEecCCCcEEE-EecC--CCEEEEECCCCeEEEEeecCC---------CCeE
Q 005325 129 ISLHAKY-GK-----HYSLRIPRMGRDMAYNSWSCDLLC-AASS--PELYRINLEQGRFLSSLNTQS---------PALN 190 (702)
Q Consensus 129 I~iw~~~-g~-----~~~~~i~~~~~~l~~~~~s~~llv-~s~d--~~V~vwdl~~g~~~~~l~~h~---------~~V~ 190 (702)
+.+|... +. ...+........+.-++....+++ |+.. +.+.+||+++.+.+.+-+.-. -.++
T Consensus 127 l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 9999876 21 111222222224444455555544 6666 679999999986554432211 2567
Q ss_pred EEEEcCC--CCEEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 191 VVSRSKL--HGLIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 191 ~l~~sp~--~~llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
.+.|-|. +..||+++.-+.|++||++. ++++..+... ..+|+++...|+ |++|++|..-|.+..||+|.+
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~------E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL------ENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc------cCcceeeeecCC-CcEEEEecccchhheecccCc
Confidence 8889887 79999999999999999995 4688888887 689999999999 999999999999999999999
Q ss_pred eEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 268 YPIR--VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 268 ~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
+.+. +.+. .+.|.+|..|| ...+++++ -|+.|+|+|+.+.+++..+.. .+.+++|-+.++
T Consensus 280 kl~g~~~kg~--tGsirsih~hp----~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 280 KLLGCGLKGI--TGSIRSIHCHP----THPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred eeeccccCCc--cCCcceEEEcC----CCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 8766 3444 67899999998 55666655 699999999999888877777 677777766553
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=1.1e-12 Score=140.86 Aligned_cols=230 Identities=15% Similarity=0.147 Sum_probs=156.7
Q ss_pred EecCCcEEEEEcCCce-E---EE-eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCCCccceEEe
Q 005325 81 GIYPPQVKVYELRQLS-L---KF-ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPRMGRDMAYN 153 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~-~---~~-~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~~~~~l~~~ 153 (702)
.+.-|.|-||+++..- + .+ .-.....|.++.|-+-|...|+.++.|+.|.+|.+. |....
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~------------- 665 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN------------- 665 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-------------
Confidence 3456899999998711 1 01 111134567777777777888888888888888654 21111
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCC
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
.......++.|...|++|.|+|-. ++|++++.|.+|++||+++.+....|..|
T Consensus 666 ---------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH----- 719 (1012)
T KOG1445|consen 666 ---------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH----- 719 (1012)
T ss_pred ---------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC-----
Confidence 112345678899999999999976 89999999999999999999988888888
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIRVKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRI 307 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~I 307 (702)
...|..++|||+ |..+|+.+.||+|+||..+++. ++..-....+..--.|.|.- ++..+++++ +.+.|.+
T Consensus 720 -tdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac---dgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 720 -TDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC---DGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred -cCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe---cCcEEEEecccccchhhhhh
Confidence 799999999999 9999999999999999999865 44421111123334567764 455555555 2667889
Q ss_pred EeCCC--CceeEEecCCCC-ceeEEEEEcCCCEEE-EEeCCCcEEEEEcCC
Q 005325 308 WDPET--GESMTSIEPTAG-KINDVCVFKDSGLLL-LALDCSQIPSYFIPD 354 (702)
Q Consensus 308 Wd~~t--g~~l~~i~~h~~-~I~~v~~~p~~~~l~-~a~~d~~I~~~~ip~ 354 (702)
||..+ +.++.+.-.... .+.--.+.+++++|+ ++-.|..|..|-+-.
T Consensus 795 Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 795 YDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred hhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 99875 344443222111 111112345666555 555677888886543
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=3.7e-12 Score=135.03 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=149.6
Q ss_pred CEEEEEECCCeEEEEecCCceEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005325 118 SKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSR 194 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~ 194 (702)
..|+.++.||.+.+-+..|..... +..+.. +-.+++.+.-|++++.||.|.+|.- +|-.-.++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~s-v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERS-ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhh-hhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 467888889988887776654443 222222 3344555555999999999999984 44443444445568999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Ee
Q 005325 195 SKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VK 273 (702)
Q Consensus 195 sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~ 273 (702)
.|+.+-++.|.. +.+.|=-+.....+-....| .+-|.++.|+|. ...+++|+.|-..+|||-. |.++. ..
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAH------DGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAH------DGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccccceeEEecc------CcEEEEeecCcc-ccceeecCCceeEEeeccc-CcccccCC
Confidence 999866665443 56777777766666777777 799999999999 9999999999999999965 44444 45
Q ss_pred eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 274 DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.| ..||++++|+| +..+++ ++-+++++ -.+..+.|..++|++|+..+++++..|.+.+-++
T Consensus 225 ~~--ey~ITSva~np----d~~~~v-~S~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 225 AE--EYAITSVAFNP----EKDYLL-WSYNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred hh--ccceeeeeecc----ccceee-eeeeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 55 67999999998 433333 33344541 1233678999999999999999999998776554
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=4.5e-12 Score=141.75 Aligned_cols=225 Identities=15% Similarity=0.166 Sum_probs=162.6
Q ss_pred CCeEEEEecCC---ceEEEecCCCccceEEecCCCcEEEE-ecCCCEEEEECCCCeE--EEEe----ecCCCCeEEEEEc
Q 005325 126 DRSISLHAKYG---KHYSLRIPRMGRDMAYNSWSCDLLCA-ASSPELYRINLEQGRF--LSSL----NTQSPALNVVSRS 195 (702)
Q Consensus 126 D~~I~iw~~~g---~~~~~~i~~~~~~l~~~~~s~~llv~-s~d~~V~vwdl~~g~~--~~~l----~~h~~~V~~l~~s 195 (702)
+..+.||+... ..+.+..+....++.++++.+.++++ +.+|.|.+||+..+.. ...+ ..|..+|+.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 34789998874 33445556677799999999996555 5678999999988765 3222 3477889999997
Q ss_pred CCC--CEEEEEEcCCeEEEEECCCCcc-eeEEecccC-----CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE---c
Q 005325 196 KLH--GLIACGGEDGAVECFDMRMRSS-AARINAVAP-----AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD---L 264 (702)
Q Consensus 196 p~~--~llasgs~DG~V~iWD~~t~~~-v~~l~~~~~-----~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD---l 264 (702)
.+- .-|++++.||.|..|+++.-.. +..+..... .......+++++|.|.+...|++|+..|.|.--+ .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 554 4488899999999999885432 111111100 0122468999999998788999999999987733 2
Q ss_pred CCCe-----EE-EEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC-CCceeEEecCCCCceeEEEEEcCCC-
Q 005325 265 RSSY-----PI-RVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE-TGESMTSIEPTAGKINDVCVFKDSG- 336 (702)
Q Consensus 265 rs~~-----~l-~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~-tg~~l~~i~~h~~~I~~v~~~p~~~- 336 (702)
+... ++ ....| ..+|.++.++| -...+++++.|-+|+||... ...++..+..+...|.+++|+|...
T Consensus 381 ~~~~~~~~~~~~~~~~h--~g~v~~v~~nP---F~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITH--IGPVYAVSRNP---FYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccccccccccccccccc--CcceEeeecCC---CccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 2222 11 12333 68999999998 34556666669999999998 7788888888788899999999665
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 005325 337 LLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 337 ~l~~a~~d~~I~~~~ip~l 355 (702)
+++++..+|.+.+|.+-.-
T Consensus 456 vF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred EEEEEcCCCceehhhhhcc
Confidence 5666667999999987543
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.4e-10 Score=116.78 Aligned_cols=231 Identities=14% Similarity=0.236 Sum_probs=155.8
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecC---CceEEEEEEcCCCCEEEEEEC-C------CeEEEEecC
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLD---SEIINFEVLADDYSKLAFLCA-D------RSISLHAKY 135 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~---~~vv~~~~ls~dg~~Las~s~-D------~~I~iw~~~ 135 (702)
.+++|+.|... +++|... -.+||+++.+.....+... -.++.+++-+ ++|+..+. . ..|.|||-.
T Consensus 9 lsvs~NQD~Sc-Fava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 9 LSVSFNQDHSC-FAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eEEEEccCCce-EEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence 45899999988 7777654 4899999874443332211 1223333333 45544432 2 478999854
Q ss_pred CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECC-CCeEEEEeecCC--CCeEEEEEcCCCCEEEEEE-cCCeEE
Q 005325 136 GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLE-QGRFLSSLNTQS--PALNVVSRSKLHGLIACGG-EDGAVE 211 (702)
Q Consensus 136 g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~-~g~~~~~l~~h~--~~V~~l~~sp~~~llasgs-~DG~V~ 211 (702)
.....+ -..+...+.......+.+++-..+.|++|... .-+.+..+.... ..+.+++-+....+||.-+ .-|.|.
T Consensus 84 k~~~i~-el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 84 KERCII-ELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cCcEEE-EEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 322221 12222344444556677888888999999876 445566665433 2344444333345666544 469999
Q ss_pred EEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe-EEEEEcCCCeEEE-EeeccCCCCeEEEEEe
Q 005325 212 CFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK-VLIYDLRSSYPIR-VKDHMFDSPIVDIKWH 287 (702)
Q Consensus 212 iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~-V~lwDlrs~~~l~-~~~h~~~~~I~sl~fs 287 (702)
|-|+..... ...+..| ...|.|++.+-+ |..+|+++..|+ |+|||..++.++. +..-.....|.+|+|+
T Consensus 163 i~dL~~~~~~~p~~I~AH------~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAH------DSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred EEEhhhcCcCCceEEEcc------cCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 999986554 3566666 799999999999 999999999997 7999999999887 4333345789999999
Q ss_pred eccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 288 QSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 288 p~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
| +...++++++.|+|+|+.+..
T Consensus 236 p---~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 P---NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred C---CccEEEEEcCCCeEEEEEeec
Confidence 8 556666777899999999864
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.7e-12 Score=134.94 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=129.5
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEEe
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSLR 142 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~~ 142 (702)
.+++|++||.. |+||+.||.+|||++.++.. ....|... +..+.||||+..|++.+.| ..+||+.. |.+....
T Consensus 148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 79999999999 99999999999999777332 33445344 6777799999999999999 88887765 3211111
Q ss_pred cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-----CEEEEEEcCCeEEEEECCC
Q 005325 143 IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-----GLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-----~llasgs~DG~V~iWD~~t 217 (702)
.|.. .......|.|+.+. .+++.-..-+.|..||+..
T Consensus 224 t~~~--------------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~ 265 (398)
T KOG0771|consen 224 TPFS--------------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISL 265 (398)
T ss_pred CCcc--------------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeee
Confidence 1100 00112233343333 1222222344555555443
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
...-..+.... .......|++++.+++ |.++|.|+.||.|.||+..+-+.+++..+.|...|+.|.|+| +...++
T Consensus 266 w~~~~~l~~~~-~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P---dsr~~~ 340 (398)
T KOG0771|consen 266 WSGSNFLRLRK-KIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP---DSRYLA 340 (398)
T ss_pred eccccccchhh-hhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC---CcCccc
Confidence 22111111100 0001268999999999 999999999999999999998888876666688999999999 455555
Q ss_pred EEeCCCEEEEEeC
Q 005325 298 ITTDNHIVRIWDP 310 (702)
Q Consensus 298 ~ss~Dg~V~IWd~ 310 (702)
..+.+..+.|..+
T Consensus 341 svSs~~~~~v~~l 353 (398)
T KOG0771|consen 341 SVSSDNEAAVTKL 353 (398)
T ss_pred ccccCCceeEEEE
Confidence 5566666666544
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.44 E-value=2.1e-12 Score=136.90 Aligned_cols=217 Identities=17% Similarity=0.230 Sum_probs=153.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecC-C-ceEEEecCC---------CccceEEecCCCcEEEEecCCCEEEEECCCC
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKY-G-KHYSLRIPR---------MGRDMAYNSWSCDLLCAASSPELYRINLEQG 176 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~-g-~~~~~~i~~---------~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g 176 (702)
++++.++.. .-+++.+.|..+.+|+.- . .......|. .+++..--..+..++++++||.+.+++- .+
T Consensus 17 vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~ 94 (737)
T KOG1524|consen 17 VCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK-SA 94 (737)
T ss_pred EEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecc-cc
Confidence 444444433 456677777777777443 1 111122221 1112111222333889999999988873 56
Q ss_pred eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 177 RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
+..+.+..|.+.|.|-.|+|+|.-|++.++||.|++|.- +|-.-.++... ..+|.|++|.|+ ...++- +..
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~------~~~v~c~~W~p~-S~~vl~-c~g 165 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQN------EESIRCARWAPN-SNSIVF-CQG 165 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhc------CceeEEEEECCC-CCceEE-ecC
Confidence 677788899999999999999999999999999999974 34333333333 478999999999 555444 345
Q ss_pred CeEEEEEcCC-CeEEEEeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 257 GKVLIYDLRS-SYPIRVKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 257 G~V~lwDlrs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
+++.|=-+.. .+++..+.| .+-|.++.|+| ...+++ ++.|-..+|||.. |.++..-.+|.-+|++++|.|+
T Consensus 166 ~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~----~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAH--DGLVLSLSWST----QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred CeEEEeecccccceeEEecc--CcEEEEeecCc----cccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 6777777764 567778999 78999999997 445554 5579999999975 7888888899999999999999
Q ss_pred CCEEEEEeC
Q 005325 335 SGLLLLALD 343 (702)
Q Consensus 335 ~~~l~~a~~ 343 (702)
..+++++.
T Consensus 239 -~~~~v~S~ 246 (737)
T KOG1524|consen 239 -KDYLLWSY 246 (737)
T ss_pred -cceeeeee
Confidence 55555554
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.3e-10 Score=119.16 Aligned_cols=230 Identities=12% Similarity=0.205 Sum_probs=158.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCc-EEEEecCC--CEEEEECCCCeEEEEeecCC
Q 005325 110 FEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCD-LLCAASSP--ELYRINLEQGRFLSSLNTQS 186 (702)
Q Consensus 110 ~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~--~V~vwdl~~g~~~~~l~~h~ 186 (702)
+..+..+...|..|+.||+ ++++.............+..+.-.-++.. +++++.+. .+.+++...+..+..+.-.
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp- 87 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP- 87 (391)
T ss_pred eeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC-
Confidence 3336666666667777774 34443311111111222333433334444 44444433 3778888877776665433
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEc
Q 005325 187 PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV--GSSTGKVLIYDL 264 (702)
Q Consensus 187 ~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las--Gs~DG~V~lwDl 264 (702)
..|.+|.++.+ .|+++-.+ .|+|||+++.+.++++... ..+...+.++.+++. +.+||. ....|.|.|||+
T Consensus 88 t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~---~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 88 TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETT---PPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhcc---CCCccceEeeccCCC-CceEEecCCCCCceEEEEEc
Confidence 36888888754 45555553 4999999999998888765 122455777777766 678884 345799999999
Q ss_pred CCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC-EEEEEeCCCCceeEEecCC--CCceeEEEEEcCCCEEE
Q 005325 265 RSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNH-IVRIWDPETGESMTSIEPT--AGKINDVCVFKDSGLLL 339 (702)
Q Consensus 265 rs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg-~V~IWd~~tg~~l~~i~~h--~~~I~~v~~~p~~~~l~ 339 (702)
.+-+++. +..| .++|-+|+|+| ++.+++++ +.| .|+|+.+.+|+.++.+..- ...|.+++|+|++.+|.
T Consensus 161 ~nl~~v~~I~aH--~~~lAalafs~----~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 161 INLQPVNTINAH--KGPLAALAFSP----DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred ccceeeeEEEec--CCceeEEEECC----CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9988887 5666 89999999998 66666655 544 6899999999999988652 34788999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 005325 340 LALDCSQIPSYFIPD 354 (702)
Q Consensus 340 ~a~~d~~I~~~~ip~ 354 (702)
+.++.++|++|.+..
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998754
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=136.64 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=161.9
Q ss_pred cCcccccceeeeeccc-CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE---EEeeecCCceEEEEEEcCCC-CE
Q 005325 45 KNIDYQRRVELIQDLW-FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL---KFERHLDSEIINFEVLADDY-SK 119 (702)
Q Consensus 45 ~~~~~~~rieliqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~---~~~~h~~~~vv~~~~ls~dg-~~ 119 (702)
.+...-+|+++-+.++ |.+.|+|+.|+.||.+ |++|+.|-.|.|||.....+ .-.+| ...|.+.-+++..+ ..
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~l-L~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGEL-LASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRI 109 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCE-EeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeE
Confidence 4455667888877775 8999999999999999 99999999999999876333 33445 33355555554333 45
Q ss_pred EEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-
Q 005325 120 LAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH- 198 (702)
Q Consensus 120 Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~- 198 (702)
+++|..|..|+++++...... + .|-.-......+..|...|.-|+..|.+
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~----------------------~-------~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEG----------------------G-------MDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred EEeccCcceEEEEeccccccc----------------------c-------cccCccchhhhhhhhhhhhhheecCCCCC
Confidence 567777777777765421100 0 0000112334567888999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCc-ceeEEecccC---CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-------
Q 005325 199 GLIACGGEDGAVECFDMRMRS-SAARINAVAP---AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS------- 267 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~---~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~------- 267 (702)
+.+.++++||+|+-+|+|... +-....++.. ....--...|++++|....+||+|++|-.++|||.|..
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD 240 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC
Confidence 899999999999999999632 2222212210 01112467899999988899999999999999996521
Q ss_pred -e----------EEE--Eeecc-C--------CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe
Q 005325 268 -Y----------PIR--VKDHM-F--------DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 268 -~----------~l~--~~~h~-~--------~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i 319 (702)
. ++. ..+|. . -.-++-+.|+| ++..+|++-..-.|+++|+..++.....
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp---NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP---NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC---CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1 111 12222 0 01156677887 5667887777778999999987765443
No 209
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=1.2e-10 Score=116.02 Aligned_cols=267 Identities=14% Similarity=0.146 Sum_probs=170.9
Q ss_pred CceeEEEECCCCCEEEEEEecC------------CcEEEEEcCCceE----EEeeecCCceEEEEE--EcCCCC-EEEEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYP------------PQVKVYELRQLSL----KFERHLDSEIINFEV--LADDYS-KLAFL 123 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~d------------g~I~vwdl~~~~~----~~~~h~~~~vv~~~~--ls~dg~-~Las~ 123 (702)
..+-|++-.++ +||+|+|. |.+.+|++....+ .+.....+.+..+.| ...++. .++-+
T Consensus 15 ~~~C~l~~~~~---vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a 91 (339)
T KOG0280|consen 15 VPICCLCHTRN---VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA 91 (339)
T ss_pred CCccccccccc---eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec
Confidence 33444444443 47777652 5688888877332 111111222233333 234555 45666
Q ss_pred ECCCeEEEEecCCceEEEec--------CCC-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEE--EeecCCCCeEEE
Q 005325 124 CADRSISLHAKYGKHYSLRI--------PRM-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS--SLNTQSPALNVV 192 (702)
Q Consensus 124 s~D~~I~iw~~~g~~~~~~i--------~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~--~l~~h~~~V~~l 192 (702)
..+|.|.++..........+ ... ..++-+...+..+++.-+.+.+.+.+........ .++.|.-.++.+
T Consensus 92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 92 HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee
Confidence 77888988865532222111 111 2244455556668888888888866665555444 788899899999
Q ss_pred EEcCCC-CEEEEEEcCCeEEEEECCC-CcceeE-EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-Ce
Q 005325 193 SRSKLH-GLIACGGEDGAVECFDMRM-RSSAAR-INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SY 268 (702)
Q Consensus 193 ~~sp~~-~llasgs~DG~V~iWD~~t-~~~v~~-l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~ 268 (702)
.|+... +++.+|++|+.+.+||+|. ++.+.. ...| ...|.+|.-+|..+.+|++|+.|-.|++||+|+ ++
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH------~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH------TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceee------ecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 988655 7999999999999999993 333333 3334 689999999987689999999999999999995 78
Q ss_pred EEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC--c---eeEEecCCCCceeEEEEEcCCCEEEEEe
Q 005325 269 PIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG--E---SMTSIEPTAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 269 ~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg--~---~l~~i~~h~~~I~~v~~~p~~~~l~~a~ 342 (702)
|+.-... ++.|+.|.++|. ....+++++.-+-.+|-+...+ + .+.+...|.+-+..-.|.....+|++|+
T Consensus 246 Pl~~~~v--~GGVWRi~~~p~--~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 246 PLFKAKV--GGGVWRIKHHPE--IFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ccccCcc--ccceEEEEecch--hhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 8764333 578999999993 3456677776555777777653 3 2233344444444444533344555543
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.3e-12 Score=130.68 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=154.2
Q ss_pred cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 148 RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 148 ~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
..+++...+..+.+++.|+.+++|+..+...+.....|...|.++.|+|++.+|++-+.| ..+||+..++.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 478888888889999999999999988777777777888999999999999999999999 9999999999777776643
Q ss_pred cCCCCCCCCeEEEEEcCCCC----CEEE-EEeCCCeEEEEEcCCCe---EEE----EeeccCCCCeEEEEEeeccCCCCC
Q 005325 228 APAGDADQEVTALEFDSNGG----FLMG-VGSSTGKVLIYDLRSSY---PIR----VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g----~~La-sGs~DG~V~lwDlrs~~---~l~----~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
........+.|+.+ + .+++ .-..-+.|.+||+.... .+. +..+ ..|++++.++ ++..
T Consensus 227 ----~k~~~~~~cRF~~d-~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~---~siSsl~VS~---dGkf 295 (398)
T KOG0771|consen 227 ----SKDEMFSSCRFSVD-NAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF---KSISSLAVSD---DGKF 295 (398)
T ss_pred ----ccchhhhhceeccc-CCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc---CcceeEEEcC---CCcE
Confidence 22456778888877 4 2333 33445677887775422 111 2222 4799999996 5555
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEe-cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 296 KLITTDNHIVRIWDPETGESMTSI-EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i-~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+++++.||.|-|++..+.+.++.+ +.|...|+.+.|+|+.+.++..+.+.++.+..++.
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 566778999999999988777655 57899999999999999999999999888888776
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.37 E-value=5.6e-11 Score=119.68 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=170.4
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEEE-eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLKF-ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR 145 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~-~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~ 145 (702)
-.+|||+|+| +|+.+.- .+.|-|..++.+.. -...+ .|+.+.|-.+.--.|..+..++.|.+|++........+..
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~qlf~cld-ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQLFLCLD-KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHHHHHHH-HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 4679999999 6766543 78888887743311 11112 2344444433323445567788999999886555555544
Q ss_pred Ccc---ceEEecCCCcE-EEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC--------------
Q 005325 146 MGR---DMAYNSWSCDL-LCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED-------------- 207 (702)
Q Consensus 146 ~~~---~l~~~~~s~~l-lv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D-------------- 207 (702)
... .+.+.|.+..+ .....+-.|.+|.+.+...... .-....+..++|+|++++.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 444 45555555554 4555667899999987665432 2222346788899999887776531
Q ss_pred ----------------------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 208 ----------------------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 208 ----------------------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
..+.+||.--.-.+..+.. .-.|..++|+|. +++|++|+.|+.++|.+--
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-------~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------GLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee-------ccceeEEEeccc-cceEEeeccchhhhhhcee
Confidence 1233343322112222222 367899999999 9999999999998876532
Q ss_pred CCeEEEEeecc-----------------------------------------------------------------CCCC
Q 005325 266 SSYPIRVKDHM-----------------------------------------------------------------FDSP 280 (702)
Q Consensus 266 s~~~l~~~~h~-----------------------------------------------------------------~~~~ 280 (702)
+-+++....|. -.-.
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 22111100000 0012
Q ss_pred eEEEEEeeccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 281 IVDIKWHQSINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+..++|++ +..++++-. -+.+-|||+...++...+.. ..+|..+.|.|....|+++....+++.|.
T Consensus 321 ~g~lafs~----Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-k~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 321 AGKLAFSC----DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-KHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred cceeeecC----CceEEeeecCCCCceEEEEechhhhhhhhhhh-ccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 55677876 777777764 46799999998777666665 78999999999999999998888877773
No 212
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.1e-10 Score=125.42 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=155.0
Q ss_pred CCcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEEC---CCeEEEEecCC-ceEEE-ecCCCccceEEecCCC
Q 005325 84 PPQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCA---DRSISLHAKYG-KHYSL-RIPRMGRDMAYNSWSC 157 (702)
Q Consensus 84 dg~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~---D~~I~iw~~~g-~~~~~-~i~~~~~~l~~~~~s~ 157 (702)
...|.+||..... ..+..+ ...+....+||||+.|++.+. +..|.+|+..+ ....+ ..+.....+.+.|.+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~--~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRS--PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred ceeEEEEcCCCCCCEEeecC--CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 3478889887633 233333 234667789999999987753 35688888873 33322 2344444778888887
Q ss_pred cEEEEe-cCC--CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-Ce--EEEEECCCCcceeEEecccCCC
Q 005325 158 DLLCAA-SSP--ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED-GA--VECFDMRMRSSAARINAVAPAG 231 (702)
Q Consensus 158 ~llv~s-~d~--~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D-G~--V~iWD~~t~~~v~~l~~~~~~~ 231 (702)
.|+... .++ .|++||+.++.... +..+...+...+|+|+++.|+..+.+ +. |.++|+.++.. ..+...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~---- 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE---- 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC----
Confidence 776553 344 59999999887654 44444567889999999988877764 44 44556665543 344333
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCC---EE
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSST---GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNH---IV 305 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~D---G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg---~V 305 (702)
...+.+.+|+|+ |.+|+..+.+ ..|.+||+.++....+... .......|+| ++..++.++.++ .+
T Consensus 330 --~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~---~~~~~p~~Sp---DG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 330 --GSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT---FLDETPSIAP---NGTMVIYSSSQGMGSVL 400 (429)
T ss_pred --CCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeEEeCCC---CCCCCceECC---CCCEEEEEEcCCCceEE
Confidence 245678899999 8888876543 3588999988876554332 1234678998 455566666443 47
Q ss_pred EEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 306 RIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 306 ~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
.+|++ +|.....+..|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77787 4666777888888899999987
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=124.43 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=136.2
Q ss_pred CCCCCEEEEEEecCCcEEEEEcCCce----EEEeeecC-CceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC
Q 005325 71 TPDGEFLIVSGIYPPQVKVYELRQLS----LKFERHLD-SEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR 145 (702)
Q Consensus 71 SpDG~~llatGs~dg~I~vwdl~~~~----~~~~~h~~-~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~ 145 (702)
+|+|-- +..|-.-|.|.+.|..... +...++.+ ..+.++.|+.-+...++.+-.++.+.+++..-.+ +.
T Consensus 182 ~~~g~d-llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----~~ 255 (636)
T KOG2394|consen 182 TPKGLD-LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----GA 255 (636)
T ss_pred CCCCcc-eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----cC
Confidence 355555 6677777888888876611 12223322 4456677888777888888999999998763100 00
Q ss_pred CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 146 MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 146 ~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
...+....+....+.+...- ...+...+..+....+.|+.++|+|++.+||+.+.||.++|||..+...+..+.
T Consensus 256 t~p~~~~~k~~~~f~i~t~k------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSK------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred CCCcccccCCCCeeEEeeee------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 00011111111111111110 111223344444455689999999999999999999999999999988887777
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
.. -+...||+|||| |.+|++|+.|-.|.||.+...+.+. .+|.|.+.|..++|.|
T Consensus 330 SY------FGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVA-RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SY------FGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVA-RGQGHKSWVSVVAFDP 384 (636)
T ss_pred hh------ccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEE-eccccccceeeEeecc
Confidence 66 588999999999 9999999999999999998877664 4555589999999986
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=7e-11 Score=121.74 Aligned_cols=220 Identities=12% Similarity=0.157 Sum_probs=161.7
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCC--CCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQ--RSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~--~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llat 80 (702)
-.||. +|.+..+|++.||++-.+. .+-+.|+. .-..+..|.-++.-.+|+|+
T Consensus 113 ~~dg~--Litc~~sG~l~~~~~k~~d~hss~l~~la------------------------~g~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 113 LADGT--LITCVSSGNLQVRHDKSGDLHSSKLIKLA------------------------TGPGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred hcCCE--EEEEecCCcEEEEeccCCccccccceeee------------------------cCCceeeeccCCCCCceEec
Confidence 35666 7999999999999998772 12222221 11334556667888888999
Q ss_pred EecC--CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecC--C
Q 005325 81 GIYP--PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSW--S 156 (702)
Q Consensus 81 Gs~d--g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~--s 156 (702)
|+.. ..+.|||+.+....|... .+.+|+ | +=.|-+|. .++.|.+. +
T Consensus 167 GGke~~n~lkiwdle~~~qiw~aK---------NvpnD~--L-----~LrVPvW~--------------tdi~Fl~g~~~ 216 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQIWSAK---------NVPNDR--L-----GLRVPVWI--------------TDIRFLEGSPN 216 (412)
T ss_pred Cchhcccceeeeecccceeeeecc---------CCCCcc--c-----cceeeeee--------------ccceecCCCCC
Confidence 9998 889999998754433322 122221 1 12344443 35566666 5
Q ss_pred CcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE-EecccCCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR-INAVAPAGDAD 234 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~-l~~~~~~~~~~ 234 (702)
..+++++.-+.|++||...+ +++..|..-..+|+++...|.+++|++|..-|.+..||++.+..... +... .
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~------t 290 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI------T 290 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc------c
Confidence 55888888899999999876 46777777788999999999999999999999999999999987776 6655 6
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEee
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp 288 (702)
+.|++|..+|. +.+||+++-|..|+|+|+.+.+++. ++. ...+++|.+.+
T Consensus 291 Gsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~ 341 (412)
T KOG3881|consen 291 GSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRD 341 (412)
T ss_pred CCcceEEEcCC-CceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecC
Confidence 89999999999 9999999999999999999977665 211 23456666653
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.31 E-value=9.9e-10 Score=119.31 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=168.5
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.|+||..+ ...+.++.|.++++... +++..+..-.....+++|+||+|++++.
T Consensus 44 ~s~Dgr~~-yv~~rdg~vsviD~~~~--------------------------~~v~~i~~G~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 44 FSPDGRYL-YVANRDGTVSVIDLATG--------------------------KVVATIKVGGNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp -TT-SSEE-EEEETTSEEEEEETTSS--------------------------SEEEEEE-SSEEEEEEE--TTTEEEEEE
T ss_pred ecCCCCEE-EEEcCCCeEEEEECCcc--------------------------cEEEEEecCCCcceEEEcCCCCEEEEEe
Confidence 46888853 44456778888888887 2344445566778999999999977777
Q ss_pred ecCCcEEEEEcCCceEEEeeecC-------CceEEEEEEcCCCCEEEEEEC-CCeEEEEecCC--ceE--EEecCCCccc
Q 005325 82 IYPPQVKVYELRQLSLKFERHLD-------SEIINFEVLADDYSKLAFLCA-DRSISLHAKYG--KHY--SLRIPRMGRD 149 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~h~~-------~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g--~~~--~~~i~~~~~~ 149 (702)
..++.|.|+|..++.....-... ..-+..+..++....+++.-. .+.|.+-+... ... .+....+..+
T Consensus 97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 78999999999885542221111 111334445566665555544 46666666543 221 2333445557
Q ss_pred eEEecCCCcEEEE-ecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCC----------CEEEEEEcCCeEEEEE
Q 005325 150 MAYNSWSCDLLCA-ASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLH----------GLIACGGEDGAVECFD 214 (702)
Q Consensus 150 l~~~~~s~~llv~-s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~----------~llasgs~DG~V~iWD 214 (702)
..+.+....++++ ..++.|.++|+.+++.+..+.. |...+..+ .+|.. ...++.-....+.+||
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccch
Confidence 8888877776665 4566799999999988776543 32233322 12222 2222222234667899
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG----SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG----s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
..+.+.+..+... ..+ ..+..+|+ +.++++. ...++|.|+|..+.+.+.......+..+..+.|++
T Consensus 256 ~~~wkvv~~I~~~------G~g-lFi~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-- 325 (369)
T PF02239_consen 256 DYAWKVVKTIPTQ------GGG-LFIKTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-- 325 (369)
T ss_dssp TTBTSEEEEEE-S------SSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T--
T ss_pred hhcCeEEEEEECC------CCc-ceeecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC--
Confidence 9999999999987 445 88889999 9999988 45589999999998776643332234589999997
Q ss_pred CCCCCeEEEe-C-CCEEEEEeCCCCceeEEecC
Q 005325 291 NTERPKLITT-D-NHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 291 ~~~~~ll~ss-~-Dg~V~IWd~~tg~~l~~i~~ 321 (702)
++..+.+|. + ++.|.|||..|.+.+..++.
T Consensus 326 -dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 326 -DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp -TSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred -CCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 555555665 3 44899999999999988873
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.31 E-value=1.6e-10 Score=116.41 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=167.1
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce-----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec-
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS-----LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK- 134 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~-----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~- 134 (702)
+..+|+|.+|++|+.. +|++.....|.||...... ..+..| +. ++..+.+++..+.|++|+.|+.-++|..
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~-~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DK-IVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCceeceehhhh-Cc-ceeEEeecCCCCceeEccCCCCccccccC
Confidence 5688999999999999 8999999999999887633 244445 33 4666778888899999999999999988
Q ss_pred CC-----ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE----EeecCCCCeEEEEEcCCCCEEEEEE
Q 005325 135 YG-----KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS----SLNTQSPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 135 ~g-----~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~----~l~~h~~~V~~l~~sp~~~llasgs 205 (702)
.+ ....+++.+...++.+.|..+.+++++....|.+|-.+...--. .-+.+.+.|++|+|+|++-+|++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33 23346677777788888888889999888888888665433210 1123556899999999999999999
Q ss_pred cCCeEEEEECCCC--------------cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 206 EDGAVECFDMRMR--------------SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 206 ~DG~V~iWD~~t~--------------~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
.|+.+++|..--. .+...+-.. .....+.|..+.|+|+ |..|+-.+.|..|.+-|-....+..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--ASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCCchhc
Confidence 9999999964311 011111111 0123589999999999 9999999999999999987765222
Q ss_pred -EeeccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 272 -VKDHMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 272 -~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
..... ..|..++.|.. ...+++++.|
T Consensus 243 ~~~~~~-~lP~ls~~~is----e~~vv~ag~~ 269 (361)
T KOG1523|consen 243 QSVATA-QLPLLSVSWIS----ENSVVAAGYD 269 (361)
T ss_pred cchhhc-cCCceeeEeec----CCceeecCCC
Confidence 21111 36888888873 4445554443
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.4e-10 Score=125.26 Aligned_cols=206 Identities=10% Similarity=0.057 Sum_probs=136.0
Q ss_pred CCeEEEEecCCceEEEec--CCCccceEEecCCCcEEEEecC---CCEEEEECCCCeE--EEEeecCCCCeEEEEEcCCC
Q 005325 126 DRSISLHAKYGKHYSLRI--PRMGRDMAYNSWSCDLLCAASS---PELYRINLEQGRF--LSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~~i--~~~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~--~~~l~~h~~~V~~l~~sp~~ 198 (702)
+..|.+|+..|.....-. ........+.|.+..++.++.+ ..|++||+.+++. +..+.+| ..+++|+|++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence 468999998865433211 2223477888887777776544 3599999998854 3333333 4468999999
Q ss_pred CEEEEEE-cCCeEEEE--ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCC-eEEEEe
Q 005325 199 GLIACGG-EDGAVECF--DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSS-YPIRVK 273 (702)
Q Consensus 199 ~llasgs-~DG~V~iW--D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~-~~l~~~ 273 (702)
..|++++ .+|.+.|| |+.++. +..+..+ ...+++++|+|+ |..|+..+ .+|.+.||++... ......
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~------~~~~~~~~wSpD-G~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTSG------AGNNTEPSWSPD-GQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeeccC------CCCcCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 8887765 57876555 665554 3444444 466889999999 88776554 5788888887542 222222
Q ss_pred eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 274 DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.+ .. .++.|+| ++..+++++.++ |.+||+.++........ .....+.|+|++.+|+.++.++.+.+|++
T Consensus 332 ~~--~~--~~~~~Sp---DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 332 GG--RG--YSAQISA---DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred cC--CC--CCccCCC---CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 33 22 4578998 455555555554 55699998875432222 23456789999999999998888877765
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.30 E-value=6.4e-11 Score=119.21 Aligned_cols=189 Identities=13% Similarity=0.156 Sum_probs=138.8
Q ss_pred EecCCCcEEEEecCCCEEEEECCC---CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC-C--cceeEEe
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQ---GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM-R--SSAARIN 225 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~---g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t-~--~~v~~l~ 225 (702)
+++....++++....+|.+|.... -+...++..|...|++|+|+|..+.|++|+.|..-++|.... + ++.-.|.
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence 333333355555555555554433 345678889999999999999999999999999999999843 3 2344444
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc---CCCCeEEEEEeeccCCCCCeEE-EeC
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM---FDSPIVDIKWHQSINTERPKLI-TTD 301 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~---~~~~I~sl~fsp~~~~~~~ll~-ss~ 301 (702)
.+ +..+++|.|+|. ++.||+|+....|.||-+....--.+..|. ..+.|+++.||| .+-+++ ++.
T Consensus 98 Ri------NrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp----nnVLlaaGs~ 166 (361)
T KOG1523|consen 98 RI------NRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP----NNVLLAAGST 166 (361)
T ss_pred Ee------ccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC----Ccceeccccc
Confidence 44 589999999999 999999999999999998875544332221 256799999998 444554 456
Q ss_pred CCEEEEEeCC-----C-------------CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 302 NHIVRIWDPE-----T-------------GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 302 Dg~V~IWd~~-----t-------------g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
|+.++|+..- . |.++..+....+.|..+.|+|.+..|+-.+.|+.+.+-+
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 9999998641 0 333444434478999999999999999999998877654
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=5.5e-11 Score=126.56 Aligned_cols=175 Identities=12% Similarity=0.178 Sum_probs=129.9
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEee----cCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCC-----------
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLN----TQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRM----------- 217 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~----~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t----------- 217 (702)
+.+.+++++-..+.|+++|.......+.|. .....|+|+.|-|.. .+++..-.+|.+++||...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445669999999999998876633222121 133689999999876 6777788899999997631
Q ss_pred ---CcceeEEecccCC--------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEE
Q 005325 218 ---RSSAARINAVAPA--------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKW 286 (702)
Q Consensus 218 ---~~~v~~l~~~~~~--------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~f 286 (702)
+............ .-....|..++|+|| |.+||+.+.||.++|||..+.+.+.+.. .|=....|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEE
Confidence 1111111110000 001358889999999 9999999999999999999877665322 23467899999
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
+| ++.++++++.|..|.||.+...+.+..-++|.++|+.|+|.|
T Consensus 341 SP---DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SP---DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cC---CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99 566666777899999999999999999999999999999987
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=2.1e-10 Score=113.44 Aligned_cols=136 Identities=18% Similarity=0.282 Sum_probs=99.1
Q ss_pred CEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEE--EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc
Q 005325 167 ELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACG--GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasg--s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.|+.++.... .+..+.. ..+.|.+++|+|++..||+. ..+..|.+||++ .+.+..+. ...+..|.|+
T Consensus 40 ~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--------~~~~n~i~ws 109 (194)
T PF08662_consen 40 ELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--------TQPRNTISWS 109 (194)
T ss_pred EEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--------CCCceEEEEC
Confidence 4555655543 3344433 34469999999999876554 356899999997 55555554 3578899999
Q ss_pred CCCCCEEEEEeC---CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC------CCEEEEEeCCCCc
Q 005325 244 SNGGFLMGVGSS---TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD------NHIVRIWDPETGE 314 (702)
Q Consensus 244 pd~g~~LasGs~---DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~------Dg~V~IWd~~tg~ 314 (702)
|+ |.+|++|+. .|.|.+||+++.+++....| ..++.++|+| ++.++++++. |+.++||+.. |+
T Consensus 110 P~-G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsP---dGr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 110 PD-GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSP---DGRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred CC-CCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcC---CCCEEEEEEeccceeccccEEEEEec-Ce
Confidence 99 999998864 47799999999888877666 3578999999 4555554432 8899999985 77
Q ss_pred eeEEec
Q 005325 315 SMTSIE 320 (702)
Q Consensus 315 ~l~~i~ 320 (702)
.+....
T Consensus 182 ~l~~~~ 187 (194)
T PF08662_consen 182 LLYKKP 187 (194)
T ss_pred EeEecc
Confidence 765543
No 221
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.30 E-value=1.7e-11 Score=126.68 Aligned_cols=160 Identities=14% Similarity=0.268 Sum_probs=129.3
Q ss_pred CCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCccee---EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 005325 187 PALNVVSRSKLHG-LIACGGEDGAVECFDMRMRSSAA---RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIY 262 (702)
Q Consensus 187 ~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~~v~---~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lw 262 (702)
.+|.++.|.+... .|+||+.|..|+||-+.....-. .+..+.....|...|++|.|+|+ |..||+|+.+|.|.||
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLW 92 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEE
Confidence 3788999988774 99999999999999887543322 33333344556899999999999 9999999999999999
Q ss_pred EcC--------C-----C-eE-EE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCc
Q 005325 263 DLR--------S-----S-YP-IR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGK 325 (702)
Q Consensus 263 Dlr--------s-----~-~~-l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~ 325 (702)
-.. + . .. +. +..| ...|..++|+| ++..+++++-|+.+++||+..|..+..+..|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h--~~diydL~Ws~---d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGH--RDDIYDLAWSP---DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEeccc--ccchhhhhccC---CCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 765 2 1 11 11 3445 78899999998 5566666778999999999999999999999999
Q ss_pred eeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 326 INDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 326 I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
|+.++|.|-+.++++-+.+.+..++.+
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeee
Confidence 999999999999998888886666654
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.1e-09 Score=122.24 Aligned_cols=231 Identities=12% Similarity=0.099 Sum_probs=151.3
Q ss_pred CcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECC---CeEEEEecCC-ceEEEe-cCCCccceEEecCCCc
Q 005325 85 PQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCAD---RSISLHAKYG-KHYSLR-IPRMGRDMAYNSWSCD 158 (702)
Q Consensus 85 g~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D---~~I~iw~~~g-~~~~~~-i~~~~~~l~~~~~s~~ 158 (702)
..|.+||..... ..+..+ . ..+....++||++.|++++.+ ..|.+|+..+ ....+. .+.......+.+.+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~~-~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYNPQTILRS-A-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCCceEeecC-C-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 368889886632 233333 2 235566789999999988753 4689999873 333322 2333336677777776
Q ss_pred EEEE-ecCC--CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CCe--EEEEECCCCcceeEEecccCCCC
Q 005325 159 LLCA-ASSP--ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DGA--VECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 159 llv~-s~d~--~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG~--V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
+++. +.++ .|++||+.++... .+..+......++|+|++..|+.++. +|. |.++|+.+++. ..+...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~----- 334 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQ----- 334 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecC-----
Confidence 6543 4444 5999999988754 45556555678899999998887764 444 66667766553 333332
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC---CCEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD---NHIVR 306 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~---Dg~V~ 306 (702)
.....+++|+|+ |.+|+..+.++ .|.+||+.++.+..+. + +.......|+| ++..++.++. ...|.
T Consensus 335 -g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~--~~~~~~p~~sp---dG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 335 -GNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P--GSLDESPSFAP---NGSMVLYATREGGRGVLA 406 (433)
T ss_pred -CCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeEECC-C--CCCCCCceECC---CCCEEEEEEecCCceEEE
Confidence 234557899999 99988765443 6999999888765433 2 22345678998 4455555553 34688
Q ss_pred EEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
+|++. |.....+..+.+.+...+|+|
T Consensus 407 ~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 407 AVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEECC-CCceEEcccCCCCCCCCccCC
Confidence 88885 555666666567788888876
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=3.4e-12 Score=141.28 Aligned_cols=186 Identities=15% Similarity=0.236 Sum_probs=136.1
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
+++++.+.-|.+|..+++.++.+..+|.+.|+.++.+...-++++++.|..|++|-+.++.++..|..| .+.||
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh------tgavt 278 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH------TGAVT 278 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc------cccee
Confidence 333333444445777888899999999999999999988899999999999999999999999999998 79999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCC------CeEEEE----------eecc----------CC---CCeEEEEEee-
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLRS------SYPIRV----------KDHM----------FD---SPIVDIKWHQ- 288 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlrs------~~~l~~----------~~h~----------~~---~~I~sl~fsp- 288 (702)
+|+|+|- . +.+.||++++||.|- ..|+.. .... .. ..+-.++|..
T Consensus 279 aiafsP~-~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~ 353 (1113)
T KOG0644|consen 279 AIAFSPR-A----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN 353 (1113)
T ss_pred eeccCcc-c----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc
Confidence 9999998 3 778899999999881 011100 0000 00 0111222221
Q ss_pred ------ccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcCCC
Q 005325 289 ------SINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 289 ------~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip~l 355 (702)
..++...+++++ .+..+++|++.+|.++..+.+|...+..+.+|| +..+..+++.|+.+.+|.|..-
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 001111223333 577899999999999999999999999999999 5556677889999888887543
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.6e-10 Score=125.03 Aligned_cols=221 Identities=18% Similarity=0.136 Sum_probs=138.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEec--CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEE-EECCCeEEEEecCC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIY--PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAF-LCADRSISLHAKYG 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~--dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las-~s~D~~I~iw~~~g 136 (702)
.++..+.+.+|||||+.|+.+... .+.|.+||+.+........... ......++|||..|+. .+.++...
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~------ 265 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQ------ 265 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCce------
Confidence 345678899999999994443322 3469999998744322221122 2345678899988865 34454433
Q ss_pred ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEC
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DGAVECFDM 215 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG~V~iWD~ 215 (702)
||++|+..+. +..+..+...+....|+|++..|+..+. +|...||.+
T Consensus 266 -------------------------------Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 266 -------------------------------IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred -------------------------------EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 3445665544 3344445555667889999988776664 466667755
Q ss_pred C--CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc
Q 005325 216 R--MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 216 ~--t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
. ++. ...+... .......+|+|+ |.+|+..+.++ .|.+||+.++....+... .......|+|
T Consensus 314 ~~~~g~-~~~lt~~------g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~---~~~~~p~~sp-- 380 (427)
T PRK02889 314 PASGGA-AQRVTFT------GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTALTDT---TRDESPSFAP-- 380 (427)
T ss_pred ECCCCc-eEEEecC------CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEEccCC---CCccCceECC--
Confidence 4 333 3333322 233456789999 99988776654 699999998876554332 2346778998
Q ss_pred CCCCCeEEEeC-CC--EEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 291 NTERPKLITTD-NH--IVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 291 ~~~~~ll~ss~-Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
++..++.++. .+ .+.+.++ +|.....+..+.+.+...+|+|-
T Consensus 381 -dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 -NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 5555666653 22 3555555 46666666655677777888773
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=2e-09 Score=108.58 Aligned_cols=228 Identities=18% Similarity=0.183 Sum_probs=153.8
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC--ceEEEecCCCccceEEecCCCc--EEEEecC------CCEEEEECCCCeEEE
Q 005325 111 EVLADDYSKLAFLCADRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSCD--LLCAASS------PELYRINLEQGRFLS 180 (702)
Q Consensus 111 ~~ls~dg~~Las~s~D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~~--llv~s~d------~~V~vwdl~~g~~~~ 180 (702)
+.+..|-..++.+..+| .+||+... ....-.....+..+.-.-.-++ .++++.+ +.|.+||-...+++.
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 45666656666665555 67776653 1111111112222222222233 3445443 359999988888887
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC-CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeCCCe
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR-MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV-GSSTGK 258 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~-t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~DG~ 258 (702)
.+.-. .+|.+|.+.++ .|++.. .+.|.+|... +.+.+..+....+ ...+.+++-+.+ ..+||. |...|+
T Consensus 90 el~f~-~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N----PkGlC~~~~~~~-k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 90 ELSFN-SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN----PKGLCSLCPTSN-KSLLAFPGFKTGQ 160 (346)
T ss_pred EEEec-cceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC----CCceEeecCCCC-ceEEEcCCCccce
Confidence 77544 47999999876 455544 4799999987 5566666665511 123444444333 334443 556799
Q ss_pred EEEEEcCCCeE---EEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC-EEEEEeCCCCceeEEecC--CCCceeEEEE
Q 005325 259 VLIYDLRSSYP---IRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNH-IVRIWDPETGESMTSIEP--TAGKINDVCV 331 (702)
Q Consensus 259 V~lwDlrs~~~---l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg-~V~IWd~~tg~~l~~i~~--h~~~I~~v~~ 331 (702)
|.|-|+...++ ..+..| .++|.+++.+- .+.+|+++ ..| .|+|||..+|.++..+.- ....|.+|+|
T Consensus 161 vQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~----~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAH--DSDIACVALNL----QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEEEEhhhcCcCCceEEEcc--cCceeEEEEcC----CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 99999987654 678888 78999999985 56666655 455 589999999999998864 2458999999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|++.+|+++++.+++++|.+-.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998754
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.28 E-value=3.2e-10 Score=130.67 Aligned_cols=321 Identities=13% Similarity=0.103 Sum_probs=195.4
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
|++-..|+++.+.+++||||++..-.... . ..|-++.-.. -.+.+.++.+-+.|.. +|.|+
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------------~--s~rS~ltys~-~~sr~~~vt~~~~~~~-~Av~t 1117 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------------G--SARSELTYSP-EGSRVEKVTMCGNGDQ-FAVST 1117 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCc---------------c--eeeeeEEEec-cCCceEEEEeccCCCe-EEEEc
Confidence 33333577999999999999996530000 0 0111121111 3567889999999999 89999
Q ss_pred cCCcEEEEEcCCce---------EEEeeecCCceEEEEEEcC-CCC-EEEEEECCCeEEEEecCCceEEEec---CCCcc
Q 005325 83 YPPQVKVYELRQLS---------LKFERHLDSEIINFEVLAD-DYS-KLAFLCADRSISLHAKYGKHYSLRI---PRMGR 148 (702)
Q Consensus 83 ~dg~I~vwdl~~~~---------~~~~~h~~~~vv~~~~ls~-dg~-~Las~s~D~~I~iw~~~g~~~~~~i---~~~~~ 148 (702)
.||.|++.++.... .+...+.++.++.+..+.. ..+ .|+.+...+.|..|++...+...++ +.+|.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99999999987611 1222334455666665443 334 6777888889999998754433222 23333
Q ss_pred --ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCC---CEEEEEE--cCCeEEEEECCCCcc
Q 005325 149 --DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLH---GLIACGG--EDGAVECFDMRMRSS 220 (702)
Q Consensus 149 --~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~---~llasgs--~DG~V~iWD~~t~~~ 220 (702)
+++..++.+-+++|++.|.+.+||+.=+..+..+.. +...|+.+..+|.. ...++++ ..+.|.+|++.++.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 788888888899999999999999998877776643 33567777766644 3444444 478899999999877
Q ss_pred eeEEeccc---------CCC----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEE
Q 005325 221 AARINAVA---------PAG----DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIK 285 (702)
Q Consensus 221 v~~l~~~~---------~~~----~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~ 285 (702)
-.++.... +.. .+......+++..- +..+.+|++|..|+.||........ ..+. ........
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~-~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~--s~~~~~~~ 1354 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK-NGFLLTGGSDMKIRKWDPTRPEISSYAVPGP--STSYSTNS 1354 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC-CceeeecCCccceeeccCCCcccccccccCc--cccccccc
Confidence 66665541 111 11222333444433 6789999999999999987654331 1111 11111122
Q ss_pred EeeccCCCCCeEEEeC--CCEEEEEeCCC-----CceeEE--------ecCCCCceeEEEEEc-CCCEEEEEeCCCcEEE
Q 005325 286 WHQSINTERPKLITTD--NHIVRIWDPET-----GESMTS--------IEPTAGKINDVCVFK-DSGLLLLALDCSQIPS 349 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~--Dg~V~IWd~~t-----g~~l~~--------i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~ 349 (702)
.+ .+..++.++. +-.| +..... +..... -..|..+|+++++.. +..+|++++.+|.|.+
T Consensus 1355 ~s----~~~~~i~~~~~i~e~i-~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1355 ES----YDLSTIPGSQFIDEFI-IYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred hh----ccccccCCCccchhhh-hhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence 21 0111111111 1100 010000 101111 134778999998876 4578999999999999
Q ss_pred E
Q 005325 350 Y 350 (702)
Q Consensus 350 ~ 350 (702)
|
T Consensus 1430 W 1430 (1431)
T KOG1240|consen 1430 W 1430 (1431)
T ss_pred c
Confidence 8
No 227
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=6.2e-09 Score=114.08 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=162.1
Q ss_pred CCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EEEecCCCc---
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKH-YSLRIPRMG--- 147 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~~~i~~~~--- 147 (702)
++.. ++.++.++.|..||..+....+.......+.....+. +..++.++.++.|..|+.. |.. .........
T Consensus 104 ~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGL-VFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA--NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCE-EEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE--CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 4555 5677889999999998866655555444333322232 3567777788999999876 432 122221110
Q ss_pred ---cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC-------CeEEEEEcC--CCCEEEEEEcCCeEEEEEC
Q 005325 148 ---RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP-------ALNVVSRSK--LHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 148 ---~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~-------~V~~l~~sp--~~~llasgs~DG~V~iWD~ 215 (702)
...... ...++++..++.++.+|+.+|+.+........ .+..+.-+| .+..+++++.+|.+..||+
T Consensus 181 ~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 111111 23467777788999999999987765432110 000111111 2457788888999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
.+++.+...... ....... . +..+++++.+|.|..+|..+++.+..........+.+.... ++.
T Consensus 259 ~tG~~~W~~~~~--------~~~~p~~--~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~-----g~~ 322 (377)
T TIGR03300 259 RSGRVLWKRDAS--------SYQGPAV--D-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV-----GGY 322 (377)
T ss_pred CCCcEEEeeccC--------CccCceE--e-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE-----CCE
Confidence 999877666532 1222333 3 56788888999999999999988763311111122222233 567
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
+++++.++.|.+||..+|+.+..+..+...+..--...+ +.|++++.++.|+.|
T Consensus 323 l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 323 LVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 778888999999999999999998875544433222333 358899999998876
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2e-09 Score=110.03 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=170.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCC-CCEEEEEECCCeEEEEecCCceE--
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADD-YSKLAFLCADRSISLHAKYGKHY-- 139 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~d-g~~Las~s~D~~I~iw~~~g~~~-- 139 (702)
..+.-++|++.-.- +|+++.|-.|++|+-.........+.....+.++.+-|. .+.|+.++. .-|.||.......
T Consensus 99 ~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhh-hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 44677889984433 789999999999998773322222222333555555554 455555555 4589996552111
Q ss_pred ------------EEecCCCc--cceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE
Q 005325 140 ------------SLRIPRMG--RDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG 204 (702)
Q Consensus 140 ------------~~~i~~~~--~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg 204 (702)
.++.|.+. ..|.+++....+++++.+ ..|.+||+.++..+.......+.++-+.|+|++.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 11222221 155555555556666654 469999999998766554556689999999999999999
Q ss_pred EcCCeEEEEECC-CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeE-----------EE
Q 005325 205 GEDGAVECFDMR-MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYP-----------IR 271 (702)
Q Consensus 205 s~DG~V~iWD~~-t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~-----------l~ 271 (702)
+-|+..++|+.. +.....-.... +.|+..+|+|. |..|+.... |.-+||.+.. +++ +.
T Consensus 257 t~davfrlw~e~q~wt~erw~lgs-------grvqtacWspc-GsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGS-------GRVQTACWSPC-GSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred cccceeeeehhcccceecceeccC-------CceeeeeecCC-CCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence 999999999544 44433333333 68999999999 776665333 3345555432 110 00
Q ss_pred -Eeec----------cCCCCeEEEEEeeccCCCCCeEEEeC--------CCEEEEEeCCCCceeEEecC---CCCceeEE
Q 005325 272 -VKDH----------MFDSPIVDIKWHQSINTERPKLITTD--------NHIVRIWDPETGESMTSIEP---TAGKINDV 329 (702)
Q Consensus 272 -~~~h----------~~~~~I~sl~fsp~~~~~~~ll~ss~--------Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v 329 (702)
+.+. ....++.+|+|.| .+.++++.-. ...|.+||....-++.-+.. ....-.-+
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDp---sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDP---SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECC---CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 1000 0256789999998 4666666532 24467788875444333211 01123456
Q ss_pred EEEc---CCCEEEEEeCCCcEEEEEc
Q 005325 330 CVFK---DSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 330 ~~~p---~~~~l~~a~~d~~I~~~~i 352 (702)
+|+| ++.+|.+|=..|.+..|.+
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeee
Confidence 6776 5667888888888887754
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=7.7e-10 Score=109.41 Aligned_cols=92 Identities=15% Similarity=0.308 Sum_probs=71.0
Q ss_pred CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc
Q 005325 167 ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.|.+||+. ++.+..+ +...++.|.|+|+|++|++|+. .|.|.+||+++.+.+..+... .++.++|+
T Consensus 84 ~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--------~~t~~~Ws 152 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--------DATDVEWS 152 (194)
T ss_pred ccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--------cEEEEEEc
Confidence 45556664 4445544 3457899999999999999875 467999999988887776543 58999999
Q ss_pred CCCCCEEEEEeC------CCeEEEEEcCCCeEEE
Q 005325 244 SNGGFLMGVGSS------TGKVLIYDLRSSYPIR 271 (702)
Q Consensus 244 pd~g~~LasGs~------DG~V~lwDlrs~~~l~ 271 (702)
|+ |.+|++++. |+.++||+.. |+.+.
T Consensus 153 Pd-Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 153 PD-GRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred CC-CCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 99 999998875 7889999984 55443
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.2e-09 Score=109.65 Aligned_cols=270 Identities=13% Similarity=0.072 Sum_probs=169.9
Q ss_pred EEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEE
Q 005325 11 MKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVY 90 (702)
Q Consensus 11 l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vw 90 (702)
....++..|+||+-+.- .|.-+... -...|+|++|-|-+...|+.|.. +-|.+|
T Consensus 114 ava~nddvVriy~ksst---~pt~Lks~----------------------sQrnvtclawRPlsaselavgCr-~gIciW 167 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSST---CPTKLKSV----------------------SQRNVTCLAWRPLSASELAVGCR-AGICIW 167 (445)
T ss_pred hhhccCcEEEEeccCCC---CCceecch----------------------hhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence 34567788999987763 22222111 12357999999988776787765 558999
Q ss_pred EcCC-ce------------EEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC-CceEEEecCCCc--c-ceEE
Q 005325 91 ELRQ-LS------------LKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKY-GKHYSLRIPRMG--R-DMAY 152 (702)
Q Consensus 91 dl~~-~~------------~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~-g~~~~~~i~~~~--~-~l~~ 152 (702)
.... +. .....+.+...|+++.+.+||..+++++. |..|.||++. |....++ +... . -+.+
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkw 246 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKW 246 (445)
T ss_pred EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEE
Confidence 8764 11 12233444456888888999999999887 7899999998 4444443 2222 2 4566
Q ss_pred ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE---------
Q 005325 153 NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR--------- 223 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~--------- 223 (702)
.|.+..++++..|....+|+..+.-.........+.|...+|+|.|..|+..+. |.-.+|.+.-...-..
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccccee
Confidence 666666999999999999976654443444455668999999999976555444 3444554431110000
Q ss_pred --EecccC---C----CCCCCCeEEEEEcCCCCCEEEEEeCCC--------eEEEEEcCCCeEEEEe--eccCCCCeEEE
Q 005325 224 --INAVAP---A----GDADQEVTALEFDSNGGFLMGVGSSTG--------KVLIYDLRSSYPIRVK--DHMFDSPIVDI 284 (702)
Q Consensus 224 --l~~~~~---~----~~~~~~Vtslafspd~g~~LasGs~DG--------~V~lwDlrs~~~l~~~--~h~~~~~I~sl 284 (702)
+....+ . .--.+.+.+|+|+|. |.+||+....+ .|.+||.+..-++.+. +...+.+-.-|
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 000000 0 011468899999999 99999876543 4888999887665532 22223345778
Q ss_pred EEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 285 KWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
+|+|.. +.+.+++.+ +.|.|.-|++
T Consensus 405 sF~pl~-n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLK-NEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred Eeeecc-cCCcEEEEEeccCceEeeee
Confidence 888855 344555544 4555555544
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.5e-09 Score=117.93 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=133.3
Q ss_pred eEEEEecCCceEE--EecCCCccceEEecCCCcEEEEec---CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 128 SISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAAS---SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 128 ~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~---d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
.|.+|+..|.... +..........+.|.+..++..+. ...|++||+.+|+... +......+..++|+|++..|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEE
Confidence 6778887754322 222223336777777777665442 3469999999886432 222233355789999998777
Q ss_pred EE-EcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEeecc
Q 005325 203 CG-GEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-G--KVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 203 sg-s~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G--~V~lwDlrs~~~l~~~~h~ 276 (702)
.. +.+| .|.+||+.++.... +... ...+...+|+|+ |..|+..+.. | .|.++|+.++....+..+
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~------~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~- 329 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTDG------RSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAPQRITWE- 329 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccCC------CCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCeEEeecC-
Confidence 54 4455 58899998876433 3322 256788999999 9888776654 4 455557777665544333
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
+..+....|+| ++..++.++. ...|.+||+.++... .+.. ........|+|++.+|+.++.++....+
T Consensus 330 -~~~~~~~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 330 -GSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -CCCccCEEECC---CCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 33456788998 4555555543 346889999887643 3443 2334567899999999988877654433
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=7.3e-08 Score=104.31 Aligned_cols=261 Identities=14% Similarity=0.141 Sum_probs=163.0
Q ss_pred ceeeeecccCCCceeEEEECCCCCEEEEEEe---cCCcEEEEEcCCc--eEEEee--ecCCceEEEEEEcCCCCEEEEEE
Q 005325 52 RVELIQDLWFETATTKIRETPDGEFLIVSGI---YPPQVKVYELRQL--SLKFER--HLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 52 rieliqd~~~~~~v~~i~~SpDG~~llatGs---~dg~I~vwdl~~~--~~~~~~--h~~~~vv~~~~ls~dg~~Las~s 124 (702)
.+++++.+.-......++++|++++|.++.. ..+.|..|.+... .+.... ......-+.+.+++++.+|+++.
T Consensus 26 ~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 26 TLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp EEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred CceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence 3455555555667788999999999666655 3689999988762 332221 21233345677899999998887
Q ss_pred C-CCeEEEEecC--CceEEE----ec----C-------CCccceEEecCCCcEEEEecCC-CEEEEECCCCe--EE--EE
Q 005325 125 A-DRSISLHAKY--GKHYSL----RI----P-------RMGRDMAYNSWSCDLLCAASSP-ELYRINLEQGR--FL--SS 181 (702)
Q Consensus 125 ~-D~~I~iw~~~--g~~~~~----~i----~-------~~~~~l~~~~~s~~llv~s~d~-~V~vwdl~~g~--~~--~~ 181 (702)
. +++|.++++. |..... .. | .+..++.+.|....++++.... .|++|++.... +. ..
T Consensus 106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 5 8999999876 322221 11 1 1222677888777788776544 58888776554 32 23
Q ss_pred eec-CCCCeEEEEEcCCCCEEEEEEc-CCeEEEEECC--CCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-
Q 005325 182 LNT-QSPALNVVSRSKLHGLIACGGE-DGAVECFDMR--MRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS- 254 (702)
Q Consensus 182 l~~-h~~~V~~l~~sp~~~llasgs~-DG~V~iWD~~--t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs- 254 (702)
+.. .......++|+|++.++.+..+ +++|.+|++. .+. .+..+...............|+++|+ |.+|.++.
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd-g~~lyvsnr 264 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD-GRFLYVSNR 264 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT-SSEEEEEEC
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC-CCEEEEEec
Confidence 332 2346889999999987766554 7899999988 332 23333322111111236889999999 88877655
Q ss_pred CCCeEEEEEcC--CCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC--CCCceeE
Q 005325 255 STGKVLIYDLR--SSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDP--ETGESMT 317 (702)
Q Consensus 255 ~DG~V~lwDlr--s~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~--~tg~~l~ 317 (702)
..+.|.+|++. ++.+.. .... .+.....++++| ++..++++. .++.|.+|++ .+|.+..
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSP---DGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeC---CCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 56789999994 344332 2221 244578999998 455566665 5889999976 4666543
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.4e-09 Score=117.76 Aligned_cols=256 Identities=13% Similarity=0.135 Sum_probs=164.1
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceE
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMA 151 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~ 151 (702)
|-+.| +|..+.||.++||++....+..+.. | .+..+..++-..|...-.....+...-.....
T Consensus 3 ~~~~~-~A~~~~~g~l~iw~t~~~~~~~e~~------------p----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALDY-FALSTGDGRLRIWDTAKNQLQQEFA------------P----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhhe-EeecCCCCeEEEEEccCceeeeeec------------c----chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 44556 8888999999999998744422211 0 11122222333444221110000000000001
Q ss_pred EecCCCcEEEEecCCCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQGRFLSSLN--TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
.......++.+...|.|.+|++..|+....+. .|.+.|+++.++.+-..|.+++.|+.|..|+......+....+.
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-- 143 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-- 143 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--
Confidence 11112226777888999999999999888876 48889999999988899999999999999999999999999888
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccC--CCCCeEEEe-CCCEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSIN--TERPKLITT-DNHIV 305 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~--~~~~ll~ss-~Dg~V 305 (702)
...+.+++++|| |..+++++ ++|++||+.+.+.+. +.+| +++|.++.|.-... .+.+++++. .+..+
T Consensus 144 ----~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 144 ----KPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred ----CCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccce
Confidence 688999999999 99998876 689999999999877 5666 89999999985211 134455544 36677
Q ss_pred EEEeCCC----CceeEEecCCCCceeEEEEEc-C--CCEEEEEeCCCcEEEEEcCCC
Q 005325 306 RIWDPET----GESMTSIEPTAGKINDVCVFK-D--SGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 306 ~IWd~~t----g~~l~~i~~h~~~I~~v~~~p-~--~~~l~~a~~d~~I~~~~ip~l 355 (702)
.+|-+.. ....+++....-+|..=.+.. + .++.+..+....+..++.+.+
T Consensus 215 ~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl 271 (541)
T KOG4547|consen 215 TVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNL 271 (541)
T ss_pred eEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCceeeeccccH
Confidence 8887754 223333433222322211222 2 224444445555556665554
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1e-08 Score=114.49 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=147.5
Q ss_pred CcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEEC---CCeEEEEecC-CceEEEe-cCCCccceEEecCCCc
Q 005325 85 PQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCA---DRSISLHAKY-GKHYSLR-IPRMGRDMAYNSWSCD 158 (702)
Q Consensus 85 g~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~---D~~I~iw~~~-g~~~~~~-i~~~~~~l~~~~~s~~ 158 (702)
..|.+||...... .+..+ . ..+....++|||+.|++++. +..|.+|++. +....+. .+.......+.+.+..
T Consensus 182 ~~l~~~d~dg~~~~~lt~~-~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDG-S-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecC-C-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 4788888766333 33333 2 23666778999999988874 4689999987 3333322 2333346777777776
Q ss_pred EEEE-ecCC--CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCcceeEEecccCCCC
Q 005325 159 LLCA-ASSP--ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG--AVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 159 llv~-s~d~--~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG--~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
+++. +.++ .|++||+.++.. ..+..+.....+.+|+|++..|+..+. +| .|.+||+.++.. ..+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~----- 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG----- 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC-----
Confidence 6544 3343 599999998875 445556666778999999998887764 33 688888876543 344333
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-C-----C
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSST---GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD-N-----H 303 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~D---G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-D-----g 303 (702)
...+....|+|+ |..|+..+.+ ..|.+||+..+....+. . +..+..+.|+| ++..++.++. . .
T Consensus 333 -~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~--~~~~~~p~~sp---DG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 333 -GGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGERILT-S--GFLVEGPTWAP---NGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred -CCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCceEecc-C--CCCCCCCeECC---CCCEEEEEEccCCCCCcc
Confidence 345677899999 9888876543 36888998665433322 2 23467789998 4555555443 2 3
Q ss_pred EEEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 304 IVRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 304 ~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
.|.++|+..+.. ..+.. .+.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 577777765443 34443 44555566655
No 235
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=99.21 E-value=6.9e-12 Score=82.04 Aligned_cols=29 Identities=48% Similarity=0.818 Sum_probs=28.2
Q ss_pred ChhhhhccCCCCccccCCCHHHHHhCCCc
Q 005325 505 DERFAAMFENKDYQIDEFSQEYIALHPMA 533 (702)
Q Consensus 505 d~rf~~~f~~~~f~~d~~~~~~~~~~~~~ 533 (702)
|+||++||+|++|+||++++||+++||+.
T Consensus 1 D~RF~~lf~~~dF~ID~t~~~yk~~~~~~ 29 (30)
T PF08159_consen 1 DPRFKALFEDPDFAIDPTSPEYKKTNPME 29 (30)
T ss_pred CchHHHhhCCcccccCCCCHHHHhhCccc
Confidence 89999999999999999999999999985
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=8.4e-09 Score=115.28 Aligned_cols=200 Identities=11% Similarity=0.145 Sum_probs=132.3
Q ss_pred eEEEEecCCceEEE--ecCCCccceEEecCCCcEEEEec---CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 128 SISLHAKYGKHYSL--RIPRMGRDMAYNSWSCDLLCAAS---SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 128 ~I~iw~~~g~~~~~--~i~~~~~~l~~~~~s~~llv~s~---d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
.|.+|+..|..... ..........+.+.+..|+.++. +..|++||+.+++.. .+..+...+.+.+|+|++..|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEE
Confidence 67777776543322 11223336677777666666553 357999999988753 4455566778899999997665
Q ss_pred -EEEcCCe--EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeecc
Q 005325 203 -CGGEDGA--VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG--KVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 203 -sgs~DG~--V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG--~V~lwDlrs~~~l~~~~h~ 276 (702)
+.+.++. |.+||+.++.. ..+..+ ....++.+|+|| |..|+..+. +| .|.+||+..+....+..+
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~------~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~- 332 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDS------PAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNPRRISFG- 332 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCC------CCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCeEEeecC-
Confidence 5555555 77779887654 334433 355678999999 988887664 33 688889887766554433
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeC
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
...+....|+| ++..++.++. ...|.+||+.++.. ..+.. ...+..+.|+|++.+|+....
T Consensus 333 -~~~~~~~~~Sp---dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 333 -GGRYSTPVWSP---RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred -CCcccCeEECC---CCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 34566788998 5555655543 24788899865543 33433 345778899999998877654
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=8.5e-09 Score=111.02 Aligned_cols=296 Identities=13% Similarity=0.111 Sum_probs=174.6
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE-
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG- 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG- 81 (702)
|++|. ++..++...|+|++...+ . +.|- . .+..+.++.|||-|.| |.|=
T Consensus 43 S~~G~--lfA~~~~~~v~i~~~~~~-~--~~lt-----------------------~-~~~~~~~L~fSP~g~y-L~T~e 92 (566)
T KOG2315|consen 43 SNNGR--LFAYSDNQVVKVFEIATL-K--VVLC-----------------------V-ELKKTYDLLFSPKGNY-LLTWE 92 (566)
T ss_pred cCCCc--EEEEEcCCeEEEEEccCC-c--EEEE-----------------------e-ccceeeeeeecccccc-ccccc
Confidence 44555 688888888999999888 2 1121 0 1125678999999999 4432
Q ss_pred ------e---cCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce-EEEecCCCcc-ce
Q 005325 82 ------I---YPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH-YSLRIPRMGR-DM 150 (702)
Q Consensus 82 ------s---~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~-~~~~i~~~~~-~l 150 (702)
. ....+.+|++.+....+.-......-.+.-|+.|.+ |+.--..+.+.||+..+.. ..-.+...+. .+
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f 171 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITML 171 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh-hhhhhhcceEEEEecCCccceeeeeeccceeeE
Confidence 1 124588999988322221111110001334555533 3333335678888877411 1111222222 34
Q ss_pred EEecCCCc----EEEEecCC---CEEEEECCCCeEEEEeec---CCCCeEEEEEcCCC-CEEEEEEc--C---------C
Q 005325 151 AYNSWSCD----LLCAASSP---ELYRINLEQGRFLSSLNT---QSPALNVVSRSKLH-GLIACGGE--D---------G 208 (702)
Q Consensus 151 ~~~~~s~~----llv~s~d~---~V~vwdl~~g~~~~~l~~---h~~~V~~l~~sp~~-~llasgs~--D---------G 208 (702)
...+..+. +++-..+| .|++|-.........+.. ....=..+.|++-+ .+|+..+. | .
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq 251 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQ 251 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccc
Confidence 44443232 23333444 477775542211111100 01122356788777 34444333 3 3
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEE
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV--GSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKW 286 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las--Gs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~f 286 (702)
++++.++....++-.+... ++|.+++|+|+ |..|++ |-.--.|.|||++- .++...+. +|=+++-|
T Consensus 252 ~Lyll~t~g~s~~V~L~k~-------GPVhdv~W~~s-~~EF~VvyGfMPAkvtifnlr~-~~v~df~e---gpRN~~~f 319 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKE-------GPVHDVTWSPS-GREFAVVYGFMPAKVTIFNLRG-KPVFDFPE---GPRNTAFF 319 (566)
T ss_pred eEEEEEecCceEEEecCCC-------CCceEEEECCC-CCEEEEEEecccceEEEEcCCC-CEeEeCCC---CCccceEE
Confidence 6888888744554444444 89999999999 876664 55677899999875 45554443 57789999
Q ss_pred eeccCCCCCeEEEe---CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 287 HQSINTERPKLITT---DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 287 sp~~~~~~~ll~ss---~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
+| .+..++++| -.|.|-|||+.+-+++..+.. ..-+-+.|+|++.++++|+...+
T Consensus 320 np---~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 320 NP---HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CC---CCCEEEEeecCCCCCceEEEeccchhhcccccc--CCceEEEEcCCCcEEEEEecccc
Confidence 98 455555555 288999999999999888876 23445789999999999987644
No 238
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.7e-10 Score=119.19 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=180.9
Q ss_pred EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc----ceEEecCCCc--EEEEecCCCEEE
Q 005325 97 LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR----DMAYNSWSCD--LLCAASSPELYR 170 (702)
Q Consensus 97 ~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~----~l~~~~~s~~--llv~s~d~~V~v 170 (702)
.++..|..+ +..+.|...|..|++++.|..|.+|+.......+++...+. ...|.|.+.+ ++.++.++.|.+
T Consensus 136 ~kL~~H~Gc--VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGC--VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCc--cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 356677655 66677788899999999999999998875444444443322 3457777766 788889999887
Q ss_pred EEC-CCCeEE--EEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC
Q 005325 171 INL-EQGRFL--SSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG 246 (702)
Q Consensus 171 wdl-~~g~~~--~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~ 246 (702)
=.+ .++.+. ..+..|.+.|+-++.-|.. .-|.+++.|+.|.-+|+++..+...+.+........-...+|+.+|.+
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 543 334332 3456789999999999987 778999999999999999887766665442111112367899999986
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe------EEE-Ee-ec---cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC--C
Q 005325 247 GFLMGVGSSTGKVLIYDLRSSY------PIR-VK-DH---MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET--G 313 (702)
Q Consensus 247 g~~LasGs~DG~V~lwDlrs~~------~l~-~~-~h---~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t--g 313 (702)
...+++|+.|-.+++||.|.-. ++. +. .| .....|++++|+. +++.++++-.|-.|+++.... |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh---~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH---DGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC---CccceeeeecccceEEeccccccC
Confidence 7799999999999999998622 111 11 11 1245699999994 678888888888999996543 3
Q ss_pred ----------ceeEE-ecCCCC--ceeEEEEE-cCCCEEEEEeCCCcEEEEEc
Q 005325 314 ----------ESMTS-IEPTAG--KINDVCVF-KDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 314 ----------~~l~~-i~~h~~--~I~~v~~~-p~~~~l~~a~~d~~I~~~~i 352 (702)
..+.. +.+|.. .|-.+-|. |.+.++++|++.|.|.+|.-
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 11122 455643 56666654 68899999999999999963
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-09 Score=110.59 Aligned_cols=277 Identities=15% Similarity=0.194 Sum_probs=176.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCce---E----EEeeec-----------CCceEEEEEEcCC-CCEEEEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS---L----KFERHL-----------DSEIINFEVLADD-YSKLAFL 123 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~---~----~~~~h~-----------~~~vv~~~~ls~d-g~~Las~ 123 (702)
..+.+|.|..+|.+ ||||..+|.|.+|.-.... . .|..|. ...+..+.|+.+. ...++..
T Consensus 26 diis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45789999999999 9999999999999765522 1 222221 1124455666653 3456777
Q ss_pred ECCCeEEEEecCCceEE---EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe-ecCCCCeEEEEEcCCCC
Q 005325 124 CADRSISLHAKYGKHYS---LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL-NTQSPALNVVSRSKLHG 199 (702)
Q Consensus 124 s~D~~I~iw~~~g~~~~---~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l-~~h~~~V~~l~~sp~~~ 199 (702)
..|++|++|.+...... ..++..+. .... .+-.+.+.+.-..++.. .+.+.+ ..|.-.|++|.++.+..
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~-~~~~-~~lr~p~~~~~~~~vea-----~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGP-PGTI-TSLRLPVEGRHDLEVEA-----SPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCC-CCcc-ceeeceeeccccceeee-----eeeeeccccceeEeeeeeecCccc
Confidence 88999999977632111 11221110 0000 00001111110111100 112222 35777899999999998
Q ss_pred EEEEEEcCCeEEEEECCC-CcceeEEeccc-CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE----Ee
Q 005325 200 LIACGGEDGAVECFDMRM-RSSAARINAVA-PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR----VK 273 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t-~~~v~~l~~~~-~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~----~~ 273 (702)
.++++ .|=.|.+|++.- .++.......- ...+-..-||+..|+|...+.|+-.++.|+|+|.|+|....-. +.
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 88875 468899999983 33333333320 1111235789999999878889999999999999999543110 10
Q ss_pred ----ecc-------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC-CCceeEEecCCC------------Cce---
Q 005325 274 ----DHM-------FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE-TGESMTSIEPTA------------GKI--- 326 (702)
Q Consensus 274 ----~h~-------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~-tg~~l~~i~~h~------------~~I--- 326 (702)
+.. --..|..+.|++ .++++++-+=-+|+|||+. ..+++.+++.|. ..|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~----sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSH----SGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEcc----CCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 000 013588999996 7788888888999999995 577887777763 223
Q ss_pred eEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 327 NDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 327 ~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
-.++|+.++..+++|+-...+++|.+
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecC
Confidence 34789999999999999998888873
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=1.8e-07 Score=99.96 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=151.4
Q ss_pred ECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecC-------CceEEEEEEcCCCCEEEEEE-C-CCeEEE
Q 005325 70 ETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLD-------SEIINFEVLADDYSKLAFLC-A-DRSISL 131 (702)
Q Consensus 70 ~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~-------~~vv~~~~ls~dg~~Las~s-~-D~~I~i 131 (702)
+||||+.|.++.+ .+..|.+||+.++...-+.... ..-.....+++||++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999888888 7899999999996664333221 11233667999999887665 3 789999
Q ss_pred EecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEEC-CCCeEE-EEee-cCC--CCeEE-EEEcC-CCCEEEEE
Q 005325 132 HAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINL-EQGRFL-SSLN-TQS--PALNV-VSRSK-LHGLIACG 204 (702)
Q Consensus 132 w~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl-~~g~~~-~~l~-~h~--~~V~~-l~~sp-~~~llasg 204 (702)
.|+........++-......|.......++.+.|+......+ .+|+.. .+.. .|. ..+.. -.|.+ ++.++.+.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 999855544444443333333333333344445555444332 223311 1111 011 00000 03344 77777666
Q ss_pred EcCCeEEEEECCCC-----cceeEEecccC-CCCCCCCeEEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCCe
Q 005325 205 GEDGAVECFDMRMR-----SSAARINAVAP-AGDADQEVTALEFDSNGGFLMGVGS----------STGKVLIYDLRSSY 268 (702)
Q Consensus 205 s~DG~V~iWD~~t~-----~~v~~l~~~~~-~~~~~~~Vtslafspd~g~~LasGs----------~DG~V~lwDlrs~~ 268 (702)
.. |+|.+.|+... ..+..+..... ..-....+.-++++|+ +..+.+.. ..+.|.++|+.+.+
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d-g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA-RDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC-CCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 66 99999996543 23333322100 0112344555999999 77777743 22589999999999
Q ss_pred EEEEeeccCCCCeEEEEEeeccCCCCCeEE-Ee-CCCEEEEEeCCCCceeEEecC
Q 005325 269 PIRVKDHMFDSPIVDIKWHQSINTERPKLI-TT-DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 269 ~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss-~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
.+....- +..+..|+++| ++..+|. +. .++.|.|.|..+++.+.++..
T Consensus 291 vi~~i~v--G~~~~~iavS~---Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 291 RLRKIEL--GHEIDSINVSQ---DAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEEEeC--CCceeeEEECC---CCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 8875554 56899999998 4441444 44 588999999999999999844
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=9.7e-09 Score=114.67 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=133.3
Q ss_pred CeEEEEecCCceEE-E-ecCCCccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE
Q 005325 127 RSISLHAKYGKHYS-L-RIPRMGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI 201 (702)
Q Consensus 127 ~~I~iw~~~g~~~~-~-~i~~~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll 201 (702)
..|.+|+..+.... + ..........+.+.+..++.++.. ..|++||+.+++... +..+.+...++.|+|++..|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 35888887754322 2 112222356666766667666533 359999998887543 33334445678999999766
Q ss_pred E-EEEcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCe--EEEEEcCCCeEEEEeec
Q 005325 202 A-CGGEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGK--VLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 202 a-sgs~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~--V~lwDlrs~~~l~~~~h 275 (702)
+ +.+.+| .|.+||+.++.. ..+..+ ....+.++|+|+ |..|+.++. +|. |.++|+.++....+..+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~------~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~ 334 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNH------FGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ 334 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe-EECccC------CCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeEEeecC
Confidence 5 445555 599999988764 334333 244578899999 988887664 444 77777777665444333
Q ss_pred cCCCCeEEEEEeeccCCCCCeEEEeC-C--CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC-CcEEEEE
Q 005325 276 MFDSPIVDIKWHQSINTERPKLITTD-N--HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC-SQIPSYF 351 (702)
Q Consensus 276 ~~~~~I~sl~fsp~~~~~~~ll~ss~-D--g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d-~~I~~~~ 351 (702)
+.....++|+| ++..++.++. + ..|.+||+.+++.. .+.. .......+|+|++.+|+..+.. +.-.+|.
T Consensus 335 --g~~~~~~~~Sp---DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 335 --GNYNARASVSP---DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred --CCCccCEEECC---CCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 23455789998 4555555543 2 36999999887754 4443 3345567899999977766553 3434444
Q ss_pred c
Q 005325 352 I 352 (702)
Q Consensus 352 i 352 (702)
+
T Consensus 408 ~ 408 (433)
T PRK04922 408 V 408 (433)
T ss_pred E
Confidence 3
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.15 E-value=4.8e-08 Score=106.21 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=169.9
Q ss_pred CEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc--eEEEecCCCccceEE
Q 005325 75 EFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK--HYSLRIPRMGRDMAY 152 (702)
Q Consensus 75 ~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~--~~~~~i~~~~~~l~~ 152 (702)
++++++-..++.|.|.|..+....-.-.....+.....+++|++++++++.|+.|.++|+... ...++.......+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 343566677899999999885543333323334556678999999999999999999999843 334555556668888
Q ss_pred ecCCCcEEEEe-cCCCEEEEECCCCeEEEEeecC-------CCCeEEEEEcCCCCEEEEEEc-CCeEEEEECCCCcce--
Q 005325 153 NSWSCDLLCAA-SSPELYRINLEQGRFLSSLNTQ-------SPALNVVSRSKLHGLIACGGE-DGAVECFDMRMRSSA-- 221 (702)
Q Consensus 153 ~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h-------~~~V~~l~~sp~~~llasgs~-DG~V~iWD~~t~~~v-- 221 (702)
.+.+..+++++ ..+.+.++|.++.+.++.+... .+.+..|..+|....+++.-. -+.|.+-|......+
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 88888877765 5788999999999998877653 346778888888886666555 488888898765543
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeec---cCCCCeEEE-------EEeecc
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRVKDH---MFDSPIVDI-------KWHQSI 290 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~~~h---~~~~~I~sl-------~fsp~~ 290 (702)
..+... .......|+|+ +.+++++ ..+..|-++|+.+++.+...+- .+..++..+ .|...
T Consensus 166 ~~i~~g-------~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~- 236 (369)
T PF02239_consen 166 TTIKVG-------RFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS- 236 (369)
T ss_dssp EEEE---------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE-
T ss_pred eeeccc-------ccccccccCcc-cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec-
Confidence 333333 56788999999 8887664 5677999999999876653221 112233322 12210
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEE----eCCCcEEEEEcCCC
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLA----LDCSQIPSYFIPDL 355 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a----~~d~~I~~~~ip~l 355 (702)
..+...+..-....+.+||..+.+.+..+.....+ .-+..+|++.++++. .+...|.++....+
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 11222222223445668999999999999985555 778889999999998 45578888887766
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.5e-08 Score=112.94 Aligned_cols=212 Identities=15% Similarity=0.128 Sum_probs=131.2
Q ss_pred CEEEEEECC---CeEEEEecCCceEE--EecCCCccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCCe
Q 005325 118 SKLAFLCAD---RSISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPAL 189 (702)
Q Consensus 118 ~~Las~s~D---~~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V 189 (702)
..|+..... ..|.+++..|.... +..........+.|.+..++.++.. ..|++||+.+++... +......+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~ 242 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSN 242 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCc
Confidence 445555433 34666676654322 2222223366777777777666543 359999999987543 33333456
Q ss_pred EEEEEcCCCCEEE-EEEcCCeEEEEEC--CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEc-
Q 005325 190 NVVSRSKLHGLIA-CGGEDGAVECFDM--RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDL- 264 (702)
Q Consensus 190 ~~l~~sp~~~lla-sgs~DG~V~iWD~--~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDl- 264 (702)
.+.+|+|+++.|+ +.+.+|...||.+ .++. +..+..+ ...+++.+|+|| |..|+..+. +|...||.+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~------~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQS------SGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCC------CCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEE
Confidence 7899999998776 5667887676654 3333 4444333 345677899999 888876554 466666654
Q ss_pred -CCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCC---CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 265 -RSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDN---HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 265 -rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D---g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
.++....+..+ +.......|+| ++..++.++.+ ..|.+||+.+++.. .+.. ......++|+|++.+|+.
T Consensus 315 ~~~g~~~~lt~~--g~~~~~~~~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 315 ASGGAAQRVTFT--GSYNTSPRISP---DGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILY 387 (427)
T ss_pred CCCCceEEEecC--CCCcCceEECC---CCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEE
Confidence 45544333322 23345678998 45555555543 37999999987654 3433 334567899999998887
Q ss_pred EeCCC
Q 005325 341 ALDCS 345 (702)
Q Consensus 341 a~~d~ 345 (702)
++.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 76544
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=4e-10 Score=120.10 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=150.7
Q ss_pred eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCC
Q 005325 96 SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ 175 (702)
Q Consensus 96 ~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~ 175 (702)
...+.+|... |.++.++.||..|++|+.|-.+.||+.. .
T Consensus 43 E~eL~GH~GC--VN~LeWn~dG~lL~SGSDD~r~ivWd~~---------------------------------------~ 81 (758)
T KOG1310|consen 43 EAELTGHTGC--VNCLEWNADGELLASGSDDTRLIVWDPF---------------------------------------E 81 (758)
T ss_pred hhhhccccce--ecceeecCCCCEEeecCCcceEEeecch---------------------------------------h
Confidence 3467788666 8888889999999999999888887654 2
Q ss_pred CeEEEEe-ecCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEECCC----------CcceeEEecccCCCCCCCCeEEEEE
Q 005325 176 GRFLSSL-NTQSPALNVVSRSKLH--GLIACGGEDGAVECFDMRM----------RSSAARINAVAPAGDADQEVTALEF 242 (702)
Q Consensus 176 g~~~~~l-~~h~~~V~~l~~sp~~--~llasgs~DG~V~iWD~~t----------~~~v~~l~~~~~~~~~~~~Vtslaf 242 (702)
.+.+..+ ++|...|.|+.|-|.. .++++|..|..|+++|+.. ......+.+| ...|..|+.
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ch------t~rVKria~ 155 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCH------TDRVKRIAT 155 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhh------hhhhhheec
Confidence 2333333 5799999999999865 7999999999999999984 2234444555 688999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCCe---E-----EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-
Q 005325 243 DSNGGFLMGVGSSTGKVLIYDLRSSY---P-----IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET- 312 (702)
Q Consensus 243 spd~g~~LasGs~DG~V~lwDlrs~~---~-----l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t- 312 (702)
.|++...|.+++.||+|+-||+|... + .. +.-+.+-....++..+| ....++++++.|-.+++||.+.
T Consensus 156 ~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp--~rp~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 156 APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISP--SRPYYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecC--CCCceEEecCCCchhhhhhhhhh
Confidence 99945899999999999999999632 1 10 11111234568899998 4466677788899999999421
Q ss_pred -------Cc----------eeEEe-cCCC-----------CceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 313 -------GE----------SMTSI-EPTA-----------GKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 313 -------g~----------~l~~i-~~h~-----------~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+. ++..+ ++|. ..++-++|+|++.-|++.-....|+.|.+..
T Consensus 234 lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 234 LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 11 12211 2221 1256688999998888887777888777644
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=1.7e-08 Score=102.79 Aligned_cols=277 Identities=12% Similarity=0.165 Sum_probs=179.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSL----KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~ 133 (702)
.+|.+++++.++++-.. |++|-..|++.-+.+.. ..+ .+..|..- +....++..-..+++.+.|..+.-+.
T Consensus 66 ~mP~~~~~~~y~~e~~~-L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~--v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRR-LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR--VSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred hCCCCceEeeeeccceE-EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc--eeeEEecCCceeEEEeccccceEEEe
Confidence 47999999999999887 89999999999888766 222 34445322 45555666668899999998887554
Q ss_pred cC-C---ceEEEecCCCccceEEecCCCcEEEEecCCCEEEE--ECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 134 KY-G---KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRI--NLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 134 ~~-g---~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vw--dl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
.. | ..|.+..+.... .+.-. ..+++...+.|... ....-..+.++.+|...|.+++|.|...+|.+|..|
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~--~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASAL--QFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred eccCCcccceEeeccCCCC--ceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 33 2 122222222111 11111 34566666665554 445567788899999999999999999999999999
Q ss_pred CeEEEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE---EEe------ecc-
Q 005325 208 GAVECFDMRMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI---RVK------DHM- 276 (702)
Q Consensus 208 G~V~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l---~~~------~h~- 276 (702)
..|.+||+--++- ...+..+ ...|..++.-+. -..+.+++.||.|.+||....... ++. .|+
T Consensus 219 ~~vi~wdigg~~g~~~el~gh------~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qp 291 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGH------NDKVQALSYAQH-TRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQP 291 (404)
T ss_pred CceEEEeccCCcceeeeeccc------hhhhhhhhhhhh-heeeeeccCCCeEEEEeccceeecCccccccchhhhhCch
Confidence 9999999985543 3444444 688999998888 889999999999999998753321 110 000
Q ss_pred -----------------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE--------eCCCCceeEEecCCCCc
Q 005325 277 -----------------------FDSPIVDIKWHQSINTERPKLITTDNHIVRIW--------DPETGESMTSIEPTAGK 325 (702)
Q Consensus 277 -----------------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW--------d~~tg~~l~~i~~h~~~ 325 (702)
++..|...+-+ ....+.+-+-.-.+++- |... .++.....-...
T Consensus 292 ffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s----~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tg 366 (404)
T KOG1409|consen 292 FFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS----NRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTG 366 (404)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc----CccccccccceeEEEEecccchhhhcCCC-Cccccccccccc
Confidence 12222222211 01111111112223333 3321 223332222447
Q ss_pred eeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 326 INDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 326 I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
|+.+.+-..-++|++++.+.-|.+|.+.++
T Consensus 367 ItamhlqetlglLvTsG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGTDRVIKIWDVRSV 396 (404)
T ss_pred eeEEEhhhhccceeecCCceEEEEEechhh
Confidence 888888888899999999999999988764
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.08 E-value=3.5e-08 Score=109.54 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=130.7
Q ss_pred eEEEEecCCceEE-EecCC-CccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 128 SISLHAKYGKHYS-LRIPR-MGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 128 ~I~iw~~~g~~~~-~~i~~-~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
.|.+++..+.... +..+. ......+.+.+..++.+... ..|++||+.+++... +..+...+.+++|+|++..|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE
Confidence 5667776543222 21122 12245566666666655543 469999999886543 334555677899999997665
Q ss_pred E-EEcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEeecc
Q 005325 203 C-GGEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-G--KVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 203 s-gs~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G--~V~lwDlrs~~~l~~~~h~ 276 (702)
. .+.++ .|.+||+.++.. ..+..+ .......+|+|+ |..|+..+.. + .|.+||+.+++...+..+
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~------~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~- 320 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL-TRLTNG------PGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR- 320 (417)
T ss_pred EEECCCCCccEEEEECCCCCE-EECCCC------CCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCEEEeecC-
Confidence 4 44444 588899987653 333333 244567799999 8888766543 3 688889887776554434
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeCCC---EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTDNH---IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~Dg---~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
+..+..+.|+| ++..++.++.++ .|.+||+.++.. ..+.. .......+|+|++.+|+.++.++....+
T Consensus 321 -~~~~~~~~~sp---dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 321 -GGYNASPSWSP---DGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred -CCCccCeEECC---CCCEEEEEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 34567889998 455566665544 789999987654 33333 2334566899999988777765543333
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.8e-09 Score=112.46 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=196.7
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCC---------------ce--EEEeeecCCceEEEEEEcCCCCEEEEEEC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---------------LS--LKFERHLDSEIINFEVLADDYSKLAFLCA 125 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---------------~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~ 125 (702)
...+|+.|+....| +|+|+.||.++|..+.+ ++ ..+++|..+ +..+.+....++|-+...
T Consensus 15 vkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s--V~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS--VMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEEEcccCCe-EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce--EEEEEeccccccccccCC
Confidence 34589999999999 89999999999998765 12 256778555 777778888899999999
Q ss_pred CCeEEEEecC-CceEEEec----CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE-EeecCCCCeEEEEEcCCCC
Q 005325 126 DRSISLHAKY-GKHYSLRI----PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS-SLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 126 D~~I~iw~~~-g~~~~~~i----~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~-~l~~h~~~V~~l~~sp~~~ 199 (702)
+|.|.+|-.+ |..+.-.+ .....+++|+..+..+.++-.||.|.+=.++..+... .+++. ....+.|+++..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHH
Confidence 9999999887 54433222 2233467777777778888888888776655443321 22221 244688999999
Q ss_pred EEEEEEcCCeEEEEECCCC-------cceeEEecccCCCCCCCCeEEEEEc--------CCCCCEEEEEeCCCeEEEEEc
Q 005325 200 LIACGGEDGAVECFDMRMR-------SSAARINAVAPAGDADQEVTALEFD--------SNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~-------~~v~~l~~~~~~~~~~~~Vtslafs--------pd~g~~LasGs~DG~V~lwDl 264 (702)
+++.+-.+|.+.++|.... .+.-..... .......|..+.|. |+ ...|+++..+|.+.|.--
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~--~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI--FSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeee--ecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhh
Confidence 8888899999999997632 121111111 11112346666664 46 778999999999988754
Q ss_pred CC-CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC---------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 265 RS-SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD---------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 265 rs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~---------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.+ ..|+.+ +. +..|..+.|+| ++..+.+++. .+.|.++..- |+.+.++......|+.++|-..
T Consensus 247 eND~~Pvv~-dt--gm~~vgakWnh---~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 247 ENDPEPVVV-DT--GMKIVGAKWNH---NGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred cCCCCCeEE-ec--ccEeecceecC---CCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCC
Confidence 44 445543 33 45789999997 4444445442 2456666543 7888888887889999999887
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCccCccccc
Q 005325 335 SGLLLLALDCSQIPSYFIPDLGPTPKWCSPIESM 368 (702)
Q Consensus 335 ~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld~l 368 (702)
+-.++.+-+. ..|+.++.|--+||.+-+.+
T Consensus 320 gLriA~Avds----fiyfanIRP~ykWgy~e~Tv 349 (1189)
T KOG2041|consen 320 GLRIAIAVDS----FIYFANIRPEYKWGYIEETV 349 (1189)
T ss_pred ceEEEEEecc----eEEEEeecccceEEEeeeEE
Confidence 7667766554 23455667778898876654
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=3.2e-07 Score=98.04 Aligned_cols=243 Identities=15% Similarity=0.142 Sum_probs=145.1
Q ss_pred CCccCCCcceEEEE---------ecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEEC
Q 005325 1 MASRGGEGNAMKST---------LINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRET 71 (702)
Q Consensus 1 ~~s~dg~~~~l~~s---------~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~S 71 (702)
+.|+||+.+.+..+ ..+.|.||++.+. +.+.+.-...+ + .+..-.....+++|
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~-------p----------~~~~~~~~~~~~ls 113 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEG-------P----------RFLVGTYPWMTSLT 113 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCC-------c----------hhhccCccceEEEC
Confidence 35899997655555 5688999999888 33211111000 0 00011223478999
Q ss_pred CCCCEEEEEEec-CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCC--C
Q 005325 72 PDGEFLIVSGIY-PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPR--M 146 (702)
Q Consensus 72 pDG~~llatGs~-dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~--~ 146 (702)
|||++|+++--. +..|.|.|+.+.....+-.... ...++...+...+ +.|.|+........ |.......+- .
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecCCccE-EEeecCceEEEEecCCCceEEeeeeeecC
Confidence 999996666534 7899999999855543332222 1222222222233 23344444433222 2211111111 1
Q ss_pred ------ccceEEecCCCcEEEEecCCCEEEEECCCC-----eEEEEeec-------CCCCeEEEEEcCCCCEEEEEEc--
Q 005325 147 ------GRDMAYNSWSCDLLCAASSPELYRINLEQG-----RFLSSLNT-------QSPALNVVSRSKLHGLIACGGE-- 206 (702)
Q Consensus 147 ------~~~l~~~~~s~~llv~s~d~~V~vwdl~~g-----~~~~~l~~-------h~~~V~~l~~sp~~~llasgs~-- 206 (702)
.+. .+.+.....+..+..|.|++.|+... ..+..+.. ....+.-++++|+++.+++...
T Consensus 191 ~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 112 23332344444455599999996433 22222211 2234445999999987777431
Q ss_pred --------CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC-EEEEEe-CCCeEEEEEcCCCeEEEEe
Q 005325 207 --------DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF-LMGVGS-STGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 207 --------DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~-~LasGs-~DG~V~lwDlrs~~~l~~~ 273 (702)
.+.|.++|+.+++.+..+... ..+..|+++|| +. +|++.. .++.|.++|+.+++.+...
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG-------~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELG-------HEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCC-------CceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 257999999999999999887 68999999999 87 777655 6889999999999888754
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.3e-08 Score=108.66 Aligned_cols=219 Identities=15% Similarity=0.144 Sum_probs=133.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecC--CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecCCc
Q 005325 61 FETATTKIRETPDGEFLIVSGIYP--PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~d--g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g~ 137 (702)
+...+...+|||||++|+.+...+ ..|.+|++.+........... ......++|||.+|+.... ++
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g---------- 265 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDG---------- 265 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCC----------
Confidence 345567889999999955554332 468899998743322222122 2334567888888875432 22
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC--eEEEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG--AVECFD 214 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG--~V~iWD 214 (702)
...|++||+.++... .+..+........|+|++..|+..+. +| .|.+||
T Consensus 266 ---------------------------~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 266 ---------------------------NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred ---------------------------CceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 124677888877653 34445555667889999987776664 33 577788
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-G--KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSIN 291 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G--~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~ 291 (702)
+.+++. ..+... .......+|+|+ |..|+..+.. + .|.+||+.++....+... .......|+|
T Consensus 318 ~~~g~~-~~lt~~------~~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~---~~~~~p~~sp--- 383 (430)
T PRK00178 318 VNGGRA-ERVTFV------GNYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT---SLDESPSVAP--- 383 (430)
T ss_pred CCCCCE-EEeecC------CCCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEEEccCC---CCCCCceECC---
Confidence 877663 333322 123456789999 8888876643 3 588999988775543321 1223457998
Q ss_pred CCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 292 TERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 292 ~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
++..++.++. ...|.++++. |.....+..+.+.+...+|+|
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 4555555553 2456677764 444444544455666666766
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=119.40 Aligned_cols=188 Identities=12% Similarity=0.081 Sum_probs=144.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEe-------cCCCcEEEEecCCCEEEEECCCCeEEEEee
Q 005325 111 EVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYN-------SWSCDLLCAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 111 ~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~-------~~s~~llv~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
+-+..+...++.++.+..+.+|+.........++..-+++.+. .....+++++..++|++|.+..-..-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 3344455788899999999999988766666666655533332 222337778888999999886333323578
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCccee-EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 005325 184 TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA-RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIY 262 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~-~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lw 262 (702)
+|.+.|..+.|+-++.++++.|+|.++++|++.+.+... +.- .|...|..++|+|+ .+++++.|.+.++|
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f------gHsaRvw~~~~~~n---~i~t~gedctcrvW 243 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF------GHSARVWACCFLPN---RIITVGEDCTCRVW 243 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc------cccceeEEEEeccc---eeEEeccceEEEEE
Confidence 999999999999999999999999999999999987665 222 34799999999977 89999999999999
Q ss_pred EcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCe-EEEeCCCEEEEEeCCC
Q 005325 263 DLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPK-LITTDNHIVRIWDPET 312 (702)
Q Consensus 263 Dlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~l-l~ss~Dg~V~IWd~~t 312 (702)
+..-.....+..|. +..|+.++..+ +..+ +++++|+.+++|++..
T Consensus 244 ~~~~~~l~~y~~h~-g~~iw~~~~~~----~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVNGTQLEVYDEHS-GKGIWKIAVPI----GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ecccceehhhhhhh-hcceeEEEEcC----CceEEEeeccCcchhhhhhhc
Confidence 76544444466674 67899999986 4444 4556899999999864
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=1.7e-07 Score=104.03 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=143.5
Q ss_pred CcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECC---CeEEEEecCC-ceEEEe-cCCCccceEEecCCCc
Q 005325 85 PQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCAD---RSISLHAKYG-KHYSLR-IPRMGRDMAYNSWSCD 158 (702)
Q Consensus 85 g~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D---~~I~iw~~~g-~~~~~~-i~~~~~~l~~~~~s~~ 158 (702)
..|.++|..... ..+..+ .. .+....++||+++|++++.+ ..|.+|++.+ ....+. .+.....+.+.+.+..
T Consensus 170 ~~l~~~d~~g~~~~~l~~~-~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGANPQTITRS-RE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCCCEEeecC-CC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 357777775422 223333 22 24455689999999988754 4799999873 333322 2223336777777666
Q ss_pred EEEEe-cC--CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCcceeEEecccCCCC
Q 005325 159 LLCAA-SS--PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED-G--AVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 159 llv~s-~d--~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D-G--~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
+++.. .+ ..|++||+.++... .+..+........|+|++..|+.++.. + .|.+||+.++.. ..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~----- 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR----- 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-----
Confidence 66543 33 35999999987654 344454455677899999888776653 3 588888876653 334333
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCC---CEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDN---HIVR 306 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D---g~V~ 306 (702)
...+..++|+|+ |.+|+.++.++ .|.+||+.++....+... .......|+| ++..+++++.+ ..+.
T Consensus 321 -~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~~~~~p~~sp---dg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 321 -GGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGERVLTDT---GLDESPSFAP---NGRMILYATTRGGRGVLG 392 (417)
T ss_pred -CCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeEEccCC---CCCCCceECC---CCCEEEEEEeCCCcEEEE
Confidence 356778899999 99998888776 899999988665444332 1234567887 45556665542 3455
Q ss_pred EEeCCCCceeEEecCCCCceeEEEE
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
+.+. +|.....+..+.+.+..++|
T Consensus 393 ~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 393 LVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEC-CCceeeECCCCCCCcCCCCC
Confidence 5554 35555555554455555544
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.5e-08 Score=105.50 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=157.4
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEE-eeecCCceEEEEEEcCCC--CEEEE-----EECCCeEEEEecC--
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKF-ERHLDSEIINFEVLADDY--SKLAF-----LCADRSISLHAKY-- 135 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~-~~h~~~~vv~~~~ls~dg--~~Las-----~s~D~~I~iw~~~-- 135 (702)
.++.||+|..+ ++=-..+.+++|++.+..... .-|... +....+||.. ..+|+ .+.-..|+||...
T Consensus 129 W~~qfs~dEsl--~arlv~nev~f~~~~~f~~~~~kl~~~~--i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESL--AARLVSNEVQFYDLGSFKTIQHKLSVSG--ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhh--hhhhhcceEEEEecCCccceeeeeeccc--eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 68999999876 333445789999998832221 222122 4455566652 22322 2344578888655
Q ss_pred CceEEEecCCC----ccceEEecCCCcE-EEEec--C---------CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC
Q 005325 136 GKHYSLRIPRM----GRDMAYNSWSCDL-LCAAS--S---------PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 136 g~~~~~~i~~~----~~~l~~~~~s~~l-lv~s~--d---------~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ 199 (702)
+.+..+....+ ...+.|++-+..| +++++ | .++|++++........+ ...++|.++.|+|++.
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence 33322222111 2256666655554 33332 2 24888888844444444 3467899999999996
Q ss_pred EEEEE--EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCCeEEEEee
Q 005325 200 LIACG--GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS---TGKVLIYDLRSSYPIRVKD 274 (702)
Q Consensus 200 llasg--s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---DG~V~lwDlrs~~~l~~~~ 274 (702)
-|+++ -.=-.|.|||++. .++..+ . .++=+++-|+|. |++|+.++- -|.|-|||+.+.+.+....
T Consensus 284 EF~VvyGfMPAkvtifnlr~-~~v~df--~------egpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRG-KPVFDF--P------EGPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EEEEEEecccceEEEEcCCC-CEeEeC--C------CCCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 55554 3467899999983 444444 3 467889999999 999887665 4899999999977765333
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEeC------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITTD------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss~------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
. ..-+-..|+| ++.++++++. |+.++||+.. |.++..-.. ......++|-|-.
T Consensus 354 a---~~tt~~eW~P---dGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 354 A---ANTTVFEWSP---DGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred c---CCceEEEEcC---CCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hHhHhheeeeecC
Confidence 2 2346789999 5666665542 8999999975 777655444 3368889998844
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.1e-07 Score=106.59 Aligned_cols=230 Identities=11% Similarity=0.101 Sum_probs=141.9
Q ss_pred cEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECC-C--eEEEEecCC-ceEEEe-cCCCccceEEecCCCcE
Q 005325 86 QVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCAD-R--SISLHAKYG-KHYSLR-IPRMGRDMAYNSWSCDL 159 (702)
Q Consensus 86 ~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D-~--~I~iw~~~g-~~~~~~-i~~~~~~l~~~~~s~~l 159 (702)
.|.++|...... .+..+ ...+....++|||++|+..+.+ + .|.+|+..+ ....+. .+.......+.+.+..+
T Consensus 199 ~l~i~d~dG~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecC--CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 566677655322 22222 2235556789999999887653 3 577778763 332222 23333367787777777
Q ss_pred EEE-ecCC--CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCcceeEEecccCCCCC
Q 005325 160 LCA-ASSP--ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG--AVECFDMRMRSSAARINAVAPAGDA 233 (702)
Q Consensus 160 lv~-s~d~--~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG--~V~iWD~~t~~~v~~l~~~~~~~~~ 233 (702)
+++ ..++ .|++||+.+++.. .+..+...+...+|+|++..|+..+. ++ .|.++|+.+++. ..+...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~------ 348 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFE------ 348 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecC------
Confidence 654 4444 4999999988754 44555556678899999987776654 33 466677776653 333222
Q ss_pred CCCeEEEEEcCCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-C--CEEEE
Q 005325 234 DQEVTALEFDSNGGFLMGVGSS-TG--KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD-N--HIVRI 307 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~-DG--~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-D--g~V~I 307 (702)
.......+|+|+ |.+|+..+. ++ .|.++|+.++.+..+.... ......|+| ++..++.++. + ..|.+
T Consensus 349 g~~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~sp---dG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 349 GEQNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR---LDESPSVAP---NGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred CCCCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeEEccCCC---CCCCceECC---CCCEEEEEEecCCceEEEE
Confidence 123445799999 888876554 34 4666788887755433221 123447998 4555555553 3 34777
Q ss_pred EeCCCCceeEEecCCCCceeEEEEEc
Q 005325 308 WDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 308 Wd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
++. +|.....+..+.+.+...+|+|
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCC
Confidence 776 5666666766566777777876
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=7.2e-08 Score=107.25 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=132.3
Q ss_pred CceeEEEECCCCCEE--EEEEec--CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecCCc
Q 005325 63 TATTKIRETPDGEFL--IVSGIY--PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKYGK 137 (702)
Q Consensus 63 ~~v~~i~~SpDG~~l--latGs~--dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g~ 137 (702)
..+.+-+|||||+.+ +++... .+.|.+.++.............. .....+||||+.|++.+. ++...+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG~~Laf~s~~~g~~di------ 257 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRKKLLAFISDRYGNPDL------ 257 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCCCEEEEEECCCCCcce------
Confidence 445677999999752 223333 35688888876332222221221 234568999999987663 221111
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCC---CeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ---GRFLSSLNTQSPALNVVSRSKLHGLIACGG-EDGAVECF 213 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~---g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iW 213 (702)
.+..|++.. +........+.......+|+|+|..|+..+ .+|...||
T Consensus 258 -----------------------------~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 258 -----------------------------FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred -----------------------------eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 011244433 222222222223446789999998777666 46665555
Q ss_pred E--CCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeeccCCCCeEEEEEe
Q 005325 214 D--MRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST---GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWH 287 (702)
Q Consensus 214 D--~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D---G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fs 287 (702)
. +.. +.....+... ...+.+.+|+|| |..|+..+.+ ..|.+||+.+++...+... ...+....|+
T Consensus 309 ~~~~~~~g~~~~~lt~~------~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wS 379 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKK------YRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWA 379 (428)
T ss_pred EEECcccccceEEeccC------CCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEEC
Confidence 4 432 2233334333 356778999999 8888866543 4799999998887655433 2356788999
Q ss_pred eccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 288 QSINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 288 p~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
| ++..++.++. ...|.+||+.+++....... .+.+...+|+|.
T Consensus 380 p---DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~-~g~~~~p~Ws~~ 425 (428)
T PRK01029 380 I---DSLHLVYSAGNSNESELYLISLITKKTRKIVIG-SGEKRFPSWGAF 425 (428)
T ss_pred C---CCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCcccCceecCC
Confidence 8 4455555542 56788999987765443333 566777788774
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=7.6e-08 Score=107.04 Aligned_cols=180 Identities=9% Similarity=0.079 Sum_probs=108.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCC----cEEEEEcCCc---e-EEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPP----QVKVYELRQL---S-LKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISL 131 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg----~I~vwdl~~~---~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~i 131 (702)
+++.....+|||||++|+.+....+ .+.+|++... . ..+... ...+.....++|||+.|++.+. ++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~- 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPR- 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCce-
Confidence 4555667899999999666654433 2334665431 1 112211 1112233467888888877653 33222
Q ss_pred EecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCC-CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC---
Q 005325 132 HAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ-GRFLSSLNTQSPALNVVSRSKLHGLIACGGED--- 207 (702)
Q Consensus 132 w~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D--- 207 (702)
|+++++.. +.....+..+...+....|+|+++.|+..+.+
T Consensus 307 ------------------------------------ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 307 ------------------------------------IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred ------------------------------------EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC
Confidence 33344432 22223344444566788999999988876653
Q ss_pred CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCCeEEEEeeccCCCCeEEE
Q 005325 208 GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS---TGKVLIYDLRSSYPIRVKDHMFDSPIVDI 284 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---DG~V~lwDlrs~~~l~~~~h~~~~~I~sl 284 (702)
..|.+||+.+++.. .+... ...+.+..|+|| |..|+..+. ...|.+||+..++...+... ...+...
T Consensus 351 ~~I~v~dl~~g~~~-~Lt~~------~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p 420 (428)
T PRK01029 351 RQICVYDLATGRDY-QLTTS------PENKESPSWAID-SLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFP 420 (428)
T ss_pred cEEEEEECCCCCeE-EccCC------CCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCc
Confidence 46999999887653 33322 245678999999 887775433 35788999988776655433 3456778
Q ss_pred EEee
Q 005325 285 KWHQ 288 (702)
Q Consensus 285 ~fsp 288 (702)
+|+|
T Consensus 421 ~Ws~ 424 (428)
T PRK01029 421 SWGA 424 (428)
T ss_pred eecC
Confidence 8887
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.6e-06 Score=89.68 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=168.9
Q ss_pred cCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEec--CCcEEEEEcC
Q 005325 16 INGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIY--PPQVKVYELR 93 (702)
Q Consensus 16 ~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~--dg~I~vwdl~ 93 (702)
+.+|.+|+|.+. ...+.+++.....+.++-|+|+|++++|.+.... .+.|-.|.+.
T Consensus 15 s~gI~v~~ld~~----------------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD 72 (346)
T COG2706 15 SQGIYVFNLDTK----------------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID 72 (346)
T ss_pred CCceEEEEEeCc----------------------ccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc
Confidence 677888988754 1233445556667888999999999995444443 5778888877
Q ss_pred C--ceEEEeee--cCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC--CceEEEecCCCccceEEecCCCcEEEEecCC
Q 005325 94 Q--LSLKFERH--LDSEIINFEVLADDYSKLAFLCA-DRSISLHAKY--GKHYSLRIPRMGRDMAYNSWSCDLLCAASSP 166 (702)
Q Consensus 94 ~--~~~~~~~h--~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~--g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~ 166 (702)
. ..+.+..+ ......+.+.+++++++|+++.. -+.|.++-+. |.....
T Consensus 73 ~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~------------------------- 127 (346)
T COG2706 73 PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV------------------------- 127 (346)
T ss_pred CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccc-------------------------
Confidence 5 34444332 22223366678888888877665 4555554332 110000
Q ss_pred CEE-EEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 167 ELY-RINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 167 ~V~-vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
+- +.+...+ .. -...++.+.+..+.|++++|+++.. --.|.+|++..+.....-.... .....-..|.|+|
T Consensus 128 -v~~~~h~g~~--p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v---~~G~GPRHi~FHp 200 (346)
T COG2706 128 -VQVVKHTGSG--PH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV---KPGAGPRHIVFHP 200 (346)
T ss_pred -eeeeecCCCC--CC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc---CCCCCcceEEEcC
Confidence 00 0011111 00 0001123678889999999888765 2468999998665322211110 1247789999999
Q ss_pred CCCCEEEEE-eCCCeEEEEEcCC--CeE--EE---EeeccC--CCCeEEEEEeeccCCCCCeEEEeC--CCEEEEEeCCC
Q 005325 245 NGGFLMGVG-SSTGKVLIYDLRS--SYP--IR---VKDHMF--DSPIVDIKWHQSINTERPKLITTD--NHIVRIWDPET 312 (702)
Q Consensus 245 d~g~~LasG-s~DG~V~lwDlrs--~~~--l~---~~~h~~--~~~I~sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~t 312 (702)
+ +.+..+. --+++|.+|.... ++. +. +..-.+ ......|..+| ++++|.+++ ...|-+|.+..
T Consensus 201 n-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~----dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 201 N-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP----DGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred C-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC----CCCEEEEecCCCCeEEEEEEcC
Confidence 9 8876654 4589999999887 332 22 111111 23455677776 677777764 55788888763
Q ss_pred --Cce--eEEecCCCCceeEEEEEcCCCEEEEEeCCC-cEEEEEcC
Q 005325 313 --GES--MTSIEPTAGKINDVCVFKDSGLLLLALDCS-QIPSYFIP 353 (702)
Q Consensus 313 --g~~--l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~-~I~~~~ip 353 (702)
|++ +.....+...-.++.+.|.+.+|++++.++ .|.+|.+.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 432 233344444578899999999999998765 57777653
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=2.5e-06 Score=92.37 Aligned_cols=267 Identities=14% Similarity=0.151 Sum_probs=166.9
Q ss_pred EEEEecC----CcEEEEEcCC--ceEEEeee-cCCceEEEEEEcCCCCEEEEEEC----CCeEEEEecCC---ceEE-Ee
Q 005325 78 IVSGIYP----PQVKVYELRQ--LSLKFERH-LDSEIINFEVLADDYSKLAFLCA----DRSISLHAKYG---KHYS-LR 142 (702)
Q Consensus 78 latGs~d----g~I~vwdl~~--~~~~~~~h-~~~~vv~~~~ls~dg~~Las~s~----D~~I~iw~~~g---~~~~-~~ 142 (702)
++.|+|. +.|.+|.+.. ..+..... .....-..+.+++++..|.++.. ++.|..|.+.. .... -.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5677777 6899998833 33322211 12223556778889999988877 46888886653 2222 22
Q ss_pred cCCCcc---ceEEecCCCcEEEEec-CCCEEEEECCC-CeEEEEe--ec-----------CCCCeEEEEEcCCCCEEEEE
Q 005325 143 IPRMGR---DMAYNSWSCDLLCAAS-SPELYRINLEQ-GRFLSSL--NT-----------QSPALNVVSRSKLHGLIACG 204 (702)
Q Consensus 143 i~~~~~---~l~~~~~s~~llv~s~-d~~V~vwdl~~-g~~~~~l--~~-----------h~~~V~~l~~sp~~~llasg 204 (702)
.+..+. .++..+....|+++.. ++.|.++++.. |.+.... .. ......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 221222 4566666666777764 77899999876 5443321 11 12467899999999887776
Q ss_pred Ec-CCeEEEEECCCCc--c--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcC--CCeEEE--Eee
Q 005325 205 GE-DGAVECFDMRMRS--S--AARINAVAPAGDADQEVTALEFDSNGGFLMGV-GSSTGKVLIYDLR--SSYPIR--VKD 274 (702)
Q Consensus 205 s~-DG~V~iWD~~t~~--~--v~~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~DG~V~lwDlr--s~~~l~--~~~ 274 (702)
.. ...|.+|++.... . ...+... .......|+|+|+ +.++.+ .-.++.|.+|++. .+.... ...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~-----~G~GPRh~~f~pd-g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVP-----PGSGPRHLAFSPD-GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECS-----TTSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccc-----cCCCCcEEEEcCC-cCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 54 4689999997654 2 2333333 2477899999999 777654 4568899999998 444322 111
Q ss_pred -c--cC--CCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC--CCc--eeEEecCCCCceeEEEEEcCCCEEEEEeC-
Q 005325 275 -H--MF--DSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE--TGE--SMTSIEPTAGKINDVCVFKDSGLLLLALD- 343 (702)
Q Consensus 275 -h--~~--~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~--tg~--~l~~i~~h~~~I~~v~~~p~~~~l~~a~~- 343 (702)
. .. ......|+++| ++.++.++. ..++|.+|+++ +|. .+..+........+++++|++.+|++++.
T Consensus 236 ~~~~~~~~~~~~~~i~isp---dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISP---DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SCETTSCSSSSEEEEEE-T---TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred eccccccccCCceeEEEec---CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 1 11 12567899998 444455554 58899999994 343 33444443445789999999999999884
Q ss_pred CCcEEEEEcC
Q 005325 344 CSQIPSYFIP 353 (702)
Q Consensus 344 d~~I~~~~ip 353 (702)
++.|.+|.+.
T Consensus 313 s~~v~vf~~d 322 (345)
T PF10282_consen 313 SNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 5578888774
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=3.1e-08 Score=113.46 Aligned_cols=183 Identities=11% Similarity=0.150 Sum_probs=145.4
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCC----eEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPA----LNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~----V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
..+++++..+.+.+||...+..+..+...... ..-+-++++.-++++|+.-+.|.+|++...+.-..+..|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH----- 174 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH----- 174 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc-----
Confidence 34788899999999999888776655433221 111224556678999999999999999833322245555
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
.+.|.++.|+-+ |.++++.+.|.++++|++.+.+.+. ..+| ...|+.++|+| . .+++.+.|.+.++|+.
T Consensus 175 -eG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH--saRvw~~~~~~----n-~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 -EGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGH--SARVWACCFLP----N-RIITVGEDCTCRVWGV 245 (967)
T ss_pred -CCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccc--cceeEEEEecc----c-eeEEeccceEEEEEec
Confidence 799999999999 9999999999999999999987654 4666 78999999997 3 7888889999999976
Q ss_pred CCCceeEEecCCCC-ceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 311 ETGESMTSIEPTAG-KINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 311 ~tg~~l~~i~~h~~-~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+ +..+..+..|.. .|..++..++...++++++|+.+.+|..-.
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5 666678888765 799999999999999999999999887544
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8e-07 Score=95.71 Aligned_cols=275 Identities=14% Similarity=0.105 Sum_probs=170.2
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecC-----------CcEEEEEcCCceEEEeee---cCCceEEEEEEcCCCCEEE
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYP-----------PQVKVYELRQLSLKFERH---LDSEIINFEVLADDYSKLA 121 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~d-----------g~I~vwdl~~~~~~~~~h---~~~~vv~~~~ls~dg~~La 121 (702)
+|.|-||+ |.-+.|||..+| |+|=+.. ..+.|||+.+..++-..+ ....+.-+.-+|.|..++|
T Consensus 244 ~~RF~Hp~-Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A 321 (698)
T KOG2314|consen 244 IQRFYHPG-VQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA 321 (698)
T ss_pred HHhccCCC-ceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeE
Confidence 56677765 688999999999 6765542 468999999844322221 1223345566788888888
Q ss_pred EEECCCeEEEEecCCce--EEEec-CCCccceEEecCCCcEEEEe--cCC---CEEEEECCCCeEEEEeecCCCCeEEEE
Q 005325 122 FLCADRSISLHAKYGKH--YSLRI-PRMGRDMAYNSWSCDLLCAA--SSP---ELYRINLEQGRFLSSLNTQSPALNVVS 193 (702)
Q Consensus 122 s~s~D~~I~iw~~~g~~--~~~~i-~~~~~~l~~~~~s~~llv~s--~d~---~V~vwdl~~g~~~~~l~~h~~~V~~l~ 193 (702)
-... .+|.||...... ..-.+ ....++..++|.+.-|+.-. .++ .+.+..+.+++.+++-..|.-.=..+.
T Consensus 322 rm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 322 RMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred Eecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 7766 568888665311 11111 22334666666654433222 121 366777788887777666653334456
Q ss_pred EcCCCCEEEEEEc----------CCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---CCeE
Q 005325 194 RSKLHGLIACGGE----------DGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS---TGKV 259 (702)
Q Consensus 194 ~sp~~~llasgs~----------DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---DG~V 259 (702)
|-.+|.+|+.-.. -..+.|+.++... ++..+... ..|...+|-|. |..+++-+. ..+|
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-------e~vi~FaWEP~-gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-------ESVIAFAWEPH-GDKFAVISGNTVKNTV 472 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-------hheeeeeeccC-CCeEEEEEccccccce
Confidence 7777777765322 2346777777543 45555554 78999999999 888776543 3578
Q ss_pred EEEEcCC--CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe---CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 260 LIYDLRS--SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT---DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 260 ~lwDlrs--~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss---~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.+|-+.+ .++-.++.. .....+.|.|+| .++.+++++ ..+.+.++|+....+...-.+.....+.+.|.|.
T Consensus 473 sfY~~e~~~~~~~lVk~~-dk~~~N~vfwsP---kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKEL-DKKFANTVFWSP---KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred eEEEeecCCCchhhhhhh-cccccceEEEcC---CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCC
Confidence 8998873 223222211 123568899999 455555544 4889999999843322222221235677899999
Q ss_pred CCEEEEEeCCC
Q 005325 335 SGLLLLALDCS 345 (702)
Q Consensus 335 ~~~l~~a~~d~ 345 (702)
|.++++++...
T Consensus 549 GRYvvT~ss~w 559 (698)
T KOG2314|consen 549 GRYVVTSSSSW 559 (698)
T ss_pred CCEEEEeeehh
Confidence 99999887643
No 260
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.97 E-value=7.1e-07 Score=98.46 Aligned_cols=257 Identities=11% Similarity=0.121 Sum_probs=158.8
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCC-----
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRM----- 146 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~----- 146 (702)
+.. ++.++.++.|..+|..+....+.......+...-.+. + ..++.+..++.|..+|.. |... .......
T Consensus 120 ~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGK-VYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCE-EEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 444 4567788999999998855555444333322222222 2 456666777877777765 4322 2211110
Q ss_pred --ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC-------CeEEEEEcC--CCCEEEEEEcCCeEEEEEC
Q 005325 147 --GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP-------ALNVVSRSK--LHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 147 --~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~-------~V~~l~~sp--~~~llasgs~DG~V~iWD~ 215 (702)
...+. ....+++++.++.++.+|+.+|+.+..+..... ....+..+| .+..+++++.+|.+..+|+
T Consensus 197 ~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 11111 123478888889999999999987665432111 011111122 2456777788999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
.+++.+...... ....+.. . +..|++++.+|.|..+|..+++.+............+.... ++.
T Consensus 274 ~tG~~~W~~~~~--------~~~~~~~--~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-----~g~ 337 (394)
T PRK11138 274 RSGQIVWKREYG--------SVNDFAV--D-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-----NGY 337 (394)
T ss_pred CCCCEEEeecCC--------CccCcEE--E-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-----CCE
Confidence 999877665433 1122333 2 56788888999999999999987763221101122223333 677
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+++++.+|.|.+.|..+|+.+.....+...+..--.. .++.|++++.++.++.+..|
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeCC
Confidence 8888889999999999999988876533333321111 35579999999999988765
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=6.7e-07 Score=98.01 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=161.9
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCCccceE
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRMGRDMA 151 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~~~~l~ 151 (702)
+.. +++++.++.|..+|..+....+.......+...... ++..++.++.++.|..++.. |... ....+....+..
T Consensus 65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGK-VYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCE-EEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 455 677788899999998886665554444433322222 34677788889999998875 4432 222222111100
Q ss_pred EecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeE-----EEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEec
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALN-----VVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINA 226 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~-----~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~ 226 (702)
.. ....+++++.++.|+.||+.+|+.+..+......+. +..+. +..+++++.+|.|..+|+.+++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 01 234578888889999999999998877655432211 11121 24778888899999999999987665443
Q ss_pred ccCCCCC-CCC---e-EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC
Q 005325 227 VAPAGDA-DQE---V-TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD 301 (702)
Q Consensus 227 ~~~~~~~-~~~---V-tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~ 301 (702)
....... ... + .+..+. +..+++++.+|.+..||+.+++.++.... .. ....... ++.+++++.
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~-~~~p~~~-----~~~vyv~~~ 287 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA--SS-YQGPAVD-----DNRLYVTDA 287 (377)
T ss_pred ccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc--CC-ccCceEe-----CCEEEEECC
Confidence 2100000 000 1 111222 45778888999999999999988774443 11 1222332 667778888
Q ss_pred CCEEEEEeCCCCceeEEecCCCC-ceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 302 NHIVRIWDPETGESMTSIEPTAG-KINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 302 Dg~V~IWd~~tg~~l~~i~~h~~-~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++.|..+|..+|+.+........ .+..... .++.|++++.++.++++..
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 99999999999998876632122 2222222 4568888999998888764
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.4e-07 Score=102.17 Aligned_cols=211 Identities=12% Similarity=0.070 Sum_probs=128.4
Q ss_pred eEEEEecCCceEEEecCC--CccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 128 SISLHAKYGKHYSLRIPR--MGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~~--~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
.|.+++..|......... ......+.+.+..|+..+.. ..|++||+.++.... +....+.+.+.+|+|++..|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 366667665432221111 22355667776666655533 359999999886543 333333455789999998776
Q ss_pred E-EEcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeecc
Q 005325 203 C-GGEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG--KVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 203 s-gs~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG--~V~lwDlrs~~~l~~~~h~ 276 (702)
. .+.+| .|.+||+.++... .+..+ ....+...|+|+ |..|+..+. +| .|.+||+.++++..+...
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~------~~~~~~~~~spD-g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~- 329 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNH------PAIDTEPFWGKD-GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV- 329 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccC------CCCcCCeEECCC-CCEEEEEECCCCCceEEEEECCCCCEEEeecC-
Confidence 4 44455 5888899877543 33333 345667899999 887776553 33 577788887775543322
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeC-CC--EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeC-CCcEEEEEc
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTD-NH--IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALD-CSQIPSYFI 352 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~-Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~-d~~I~~~~i 352 (702)
+.......|+| ++..++.++. ++ .|.+||+.++... .+.. ........|+|++.+++.++. ++.-.+|.+
T Consensus 330 -~~~~~~~~~Sp---dg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 330 -GNYNARPRLSA---DGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred -CCCccceEECC---CCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 22334578998 4555555553 33 5888999887643 3332 223335689999998877654 444445554
Q ss_pred CC
Q 005325 353 PD 354 (702)
Q Consensus 353 p~ 354 (702)
+.
T Consensus 404 ~~ 405 (430)
T PRK00178 404 SI 405 (430)
T ss_pred EC
Confidence 43
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=121.07 Aligned_cols=275 Identities=12% Similarity=0.102 Sum_probs=180.7
Q ss_pred eEEEEecCCcEEEEcccC-CCCCccccchHhhhhhcc-Cccccc-ceeeeecccCCCceeEEEECCCCCEEEEEEecCCc
Q 005325 10 AMKSTLINGVKMYSLVSQ-QRSVAAWLTPKKQRALRK-NIDYQR-RVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQ 86 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g-~~slp~w~~~k~kr~lk~-~~~~~~-rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~ 86 (702)
++..++..+|..++|++. ....+-|+...+-...+. ++++.. +-.+++...- .-+.++. ++....++.
T Consensus 2121 ~ia~an~~~~qe~dvs~~~~~q~~~w~~ne~d~~~~~~d~~~~~s~~~~l~~~~~--------~~~~s~~-~~~~n~~~~ 2191 (2439)
T KOG1064|consen 2121 TIAFANHHDVQEFDVSSSLAHQYYWWFGNERDTETKGVDPDANHSPPDALASQST--------VGSFSNR-FTPSNLPWL 2191 (2439)
T ss_pred eEEecCCCcchheeccchhhhhhhhhhcchhhhhhcCCCcccccCchhhcccccc--------ccccccc-CCcccCCcc
Confidence 577788888999999864 233477776654443332 222211 1112221110 0122222 333344455
Q ss_pred EEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCCCcc--ceEEecCCCcEEEE
Q 005325 87 VKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPRMGR--DMAYNSWSCDLLCA 162 (702)
Q Consensus 87 I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~~~~--~l~~~~~s~~llv~ 162 (702)
..-|.....++...++... +....-+|.-.+.++++.|++|++|.-. ...+..+.....+ .+.++..++..-++
T Consensus 2192 ~~tq~~~~~~~~~k~~v~~--v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~ 2269 (2439)
T KOG1064|consen 2192 GSTQTSRGASVMIKHPVEN--VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV 2269 (2439)
T ss_pred ccceecccceeEeecccCc--eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee
Confidence 5555555544444444333 4444455555778899999999999765 3344444443333 66777777788899
Q ss_pred ecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEECCCC---cceeEEecccCCCCCCCC
Q 005325 163 ASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---DGAVECFDMRMR---SSAARINAVAPAGDADQE 236 (702)
Q Consensus 163 s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---DG~V~iWD~~t~---~~v~~l~~~~~~~~~~~~ 236 (702)
..||.+.+|... .+.....+.|....+.+.|-. .++++++. ++.|.+||..-. ..+. .+| ...
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H------~~g 2338 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH------DGG 2338 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec------CCC
Confidence 999999999877 566677888998888888875 56777653 789999997632 2333 555 789
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
+|++++-|. ...|++|+.+|.|+|||++..+..+.. +. ++ ...+++.++..|.|+||++..-..+
T Consensus 2339 aT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~------~~----~~----~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2339 ATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTF------QA----LD----TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHh------hh----hh----hhheeeccCcccceEEEEccccchh
Confidence 999999999 999999999999999999987765321 11 32 1456777778999999999987666
Q ss_pred EEecC
Q 005325 317 TSIEP 321 (702)
Q Consensus 317 ~~i~~ 321 (702)
.+++.
T Consensus 2404 ~~~p~ 2408 (2439)
T KOG1064|consen 2404 HTFPS 2408 (2439)
T ss_pred hcCch
Confidence 65543
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=3.1e-08 Score=99.46 Aligned_cols=276 Identities=19% Similarity=0.244 Sum_probs=176.0
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce---E----EEeeec-----------CCceEEEEEEcCCC-CEEEE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS---L----KFERHL-----------DSEIINFEVLADDY-SKLAF 122 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~---~----~~~~h~-----------~~~vv~~~~ls~dg-~~Las 122 (702)
...|++|.|...|.| ++||...|.|.+|.-.... . .|+.|. ...|..+.|+.+.+ ..++.
T Consensus 26 ad~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456899999999999 9999999999999876522 2 233331 11245566776654 35677
Q ss_pred EECCCeEEEEecCCceEEEe----------cCCCcc-----ceEEecCC-CcEEEEecCCCEEEEECCCCeEEEEe-ecC
Q 005325 123 LCADRSISLHAKYGKHYSLR----------IPRMGR-----DMAYNSWS-CDLLCAASSPELYRINLEQGRFLSSL-NTQ 185 (702)
Q Consensus 123 ~s~D~~I~iw~~~g~~~~~~----------i~~~~~-----~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~~~~l-~~h 185 (702)
.+.|++|++|.++.....+- .|..+. .+..-.-+ .+.+++..-. +.+ ..|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~-------------rvyaNaH 171 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC-------------RVYANAH 171 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc-------------eeccccc
Confidence 78899999998875432221 111110 00000000 0112221111 112 457
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-ceeEEecc-cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS-SAARINAV-APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD 263 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~-~v~~l~~~-~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD 263 (702)
.-.|+++.|+.+...++++ .|=.|.+|++.-.. +....... .....-..-|++..|+|.....|.-.++.|.|+|-|
T Consensus 172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 7789999999988888774 56889999987432 22222222 011111356899999998677888889999999999
Q ss_pred cCCCeE------EE--Eee---cc----CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-CceeEEecCCCC---
Q 005325 264 LRSSYP------IR--VKD---HM----FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESMTSIEPTAG--- 324 (702)
Q Consensus 264 lrs~~~------l~--~~~---h~----~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l~~i~~h~~--- 324 (702)
+|.... +. ..+ |. --..|..+.|+| .++++++-+=-+|+|||++. ..++.+++.|..
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~----ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD----NGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC----CCcEEEEeccceEEEEecccccCCceeechHHHHHH
Confidence 995321 11 111 10 124688899997 78888888889999999986 567888876532
Q ss_pred ---------cee---EEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 325 ---------KIN---DVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 325 ---------~I~---~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
.|. .+.|+.+...+++|+......+|-..+-|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCC
Confidence 232 36677788888888888777777644443
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=5.3e-09 Score=106.44 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=127.9
Q ss_pred ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
....+.+|....|+-.......-++++.+-.|.+.|+++|... .|. ..+.|.++.|...++++..|+.+|.|..+|+|
T Consensus 205 ~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 205 MLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred ceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEee
Confidence 3444555554444111111112355677778889999988543 343 45579999999889999999999999999999
Q ss_pred CC-----cceeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeE---EE-EeeccCCCCeEEEEE
Q 005325 217 MR-----SSAARINAVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYP---IR-VKDHMFDSPIVDIKW 286 (702)
Q Consensus 217 t~-----~~v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~---l~-~~~h~~~~~I~sl~f 286 (702)
.+ .+...+-. ...|+||..-. + +.+|++.+.+|+|.+||+|.-++ +. ..+|.+...-.-+..
T Consensus 283 ~rnqG~~~~a~rlyh-------~Ssvtslq~Lq~s-~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v 354 (425)
T KOG2695|consen 283 CRNQGNGWCAQRLYH-------DSSVTSLQILQFS-QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV 354 (425)
T ss_pred ecccCCCcceEEEEc-------Ccchhhhhhhccc-cceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc
Confidence 75 35555544 48899988766 4 78999999999999999997665 44 566654333333333
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCC----ceeEEEEEc
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAG----KINDVCVFK 333 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~----~I~~v~~~p 333 (702)
++ ..+.++++++|...+||.+.+|.++.+++.... .|.++||..
T Consensus 355 ~~---eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 355 KE---EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cc---ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 43 456677778999999999999999999876322 444555443
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.92 E-value=2.2e-08 Score=102.06 Aligned_cols=246 Identities=18% Similarity=0.277 Sum_probs=177.7
Q ss_pred EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceE---EEecCCCccceEEecCCCcEEEEecCCCEEEEE
Q 005325 98 KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHY---SLRIPRMGRDMAYNSWSCDLLCAASSPELYRIN 172 (702)
Q Consensus 98 ~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~---~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwd 172 (702)
.+++|.+. +....+-|...-+++++.|++++||-.. +.+. ....|...+++.|...+..|+++-..++++-+.
T Consensus 19 ~~eG~~d~--vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 19 KIEGSQDD--VNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhcCchhh--hhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 44555444 3444444444678899999999999433 2221 234577888999999999999999999998874
Q ss_pred ----CCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC
Q 005325 173 ----LEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF 248 (702)
Q Consensus 173 ----l~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~ 248 (702)
.+...+++.+..|...|..+-|+-...++++.+.|..+.---.+++..+..+... ...+++.|. -.
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-------~~~t~~~~d---~~ 166 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-------TPASALQFD---AL 166 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-------ccCCCCcee---eE
Confidence 4455667778889999999999988899999999988765556666665554443 223333333 11
Q ss_pred EEEEEeCCCeEEEEEcCCCe--EEE-EeeccCCCCeEEEEEeeccCCCCCeEEE-eCCCEEEEEeCCCCc-eeEEecCCC
Q 005325 249 LMGVGSSTGKVLIYDLRSSY--PIR-VKDHMFDSPIVDIKWHQSINTERPKLIT-TDNHIVRIWDPETGE-SMTSIEPTA 323 (702)
Q Consensus 249 ~LasGs~DG~V~lwDlrs~~--~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s~Dg~V~IWd~~tg~-~l~~i~~h~ 323 (702)
+..+|...|.|.+-.+.... ++. +.+| ..+|.+++|.| ...++.+ +.|..|.+||+--.+ ....+.+|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~----~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDP----GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcC----CCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 55667777777766654322 333 6777 78999999997 5555554 579999999997433 445778899
Q ss_pred CceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC-CCCCCc
Q 005325 324 GKINDVCVFKDSGLLLLALDCSQIPSYFIPDL-GPTPKW 361 (702)
Q Consensus 324 ~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l-g~ap~W 361 (702)
..|..++..+....++++++|+.|.+|..... ..+|.|
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpew 279 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEW 279 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccc
Confidence 99999998888889999999999999987654 356766
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1.6e-07 Score=92.85 Aligned_cols=217 Identities=14% Similarity=0.055 Sum_probs=142.8
Q ss_pred CEEEEEECCCeEEEEecCCceEE-EecCCCccceEEecCCCc----EEEEecCCCEEEEECCCCeEEEEeecCCC--CeE
Q 005325 118 SKLAFLCADRSISLHAKYGKHYS-LRIPRMGRDMAYNSWSCD----LLCAASSPELYRINLEQGRFLSSLNTQSP--ALN 190 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g~~~~-~~i~~~~~~l~~~~~s~~----llv~s~d~~V~vwdl~~g~~~~~l~~h~~--~V~ 190 (702)
.+|+.++.-|...+|+....... ........++..+...|+ +++++.+.++.+++++-+..-. ..|.. .++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeecccccee
Confidence 57888889999999987632222 212222334444444443 7889999888887765443221 23333 388
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-
Q 005325 191 VVSRSKLHGLIACGGEDGAVECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY- 268 (702)
Q Consensus 191 ~l~~sp~~~llasgs~DG~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~- 268 (702)
++++++++.++++.+....|-+|.+... ..+..+... .....-.+..|+.. ...+|+++.||++.|||+|...
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a----~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA----PTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec----ccCCCceeeeeccC-cceEEEEecCCcEEEEEeccccc
Confidence 9999999999999999999999988743 222222222 11345568889988 8999999999999999999744
Q ss_pred EEE----EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC--------CceeEEEEEcCCC
Q 005325 269 PIR----VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTA--------GKINDVCVFKDSG 336 (702)
Q Consensus 269 ~l~----~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~--------~~I~~v~~~p~~~ 336 (702)
|.. .++| +.+.|..+.|+|.. ....|+.+-.-+.+.|-|++++.....+-... ..|..-+|..++.
T Consensus 238 pm~~~sstrp~-hnGa~R~c~Fsl~g-~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 238 PMAEISSTRPH-HNGAFRVCRFSLYG-LLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred chhhhcccCCC-CCCceEEEEecCCC-cceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 433 3455 47899999999721 22334444467889999999988766654411 2255555555554
Q ss_pred EEEEEeC
Q 005325 337 LLLLALD 343 (702)
Q Consensus 337 ~l~~a~~ 343 (702)
.+.++++
T Consensus 316 s~~v~~e 322 (344)
T KOG4532|consen 316 SNDVKNE 322 (344)
T ss_pred ccccccc
Confidence 4444443
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.1e-07 Score=103.18 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=146.0
Q ss_pred cCCCCEEEEEECCCeEEEEecCCceEEEec-CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEE
Q 005325 114 ADDYSKLAFLCADRSISLHAKYGKHYSLRI-PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVV 192 (702)
Q Consensus 114 s~dg~~Las~s~D~~I~iw~~~g~~~~~~i-~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l 192 (702)
++...++|....||.+++|+.........+ |.. ..+..+.-..|.+.-+.. .-...|+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------~~s~t~~~~~w~L~~~~s-------~~k~~~~ 60 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------SLSGTCTYTKWGLSADYS-------PMKWLSL 60 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch--------------hccCcceeEEEEEEeccc-------hHHHHhH
Confidence 345567888888899999888744333322 211 112222333455221100 0011111
Q ss_pred EE----cCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 193 SR----SKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 193 ~~----sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
.+ +.+...++-|...|.|.+|++..++.-..+... .|.+.|+++.++.+ -..|.+++.|+.|..|+.....
T Consensus 61 ~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~----~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTD----KHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecC----CCCCcceeeecccc-cCceEecCCceeEEEEecccce
Confidence 11 223467888999999999999999988887754 45799999999988 8899999999999999999988
Q ss_pred EEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC-----CCE-EEEEe
Q 005325 269 PIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD-----SGL-LLLAL 342 (702)
Q Consensus 269 ~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~-----~~~-l~~a~ 342 (702)
.+...... ...+.+++.+| ++.+++++ .+.|++||+.+++.+..+++|.++|+++.|.-. +.+ |.++.
T Consensus 136 ~~~~~~~~-~~~~~sl~is~----D~~~l~~a-s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 136 IIRIWKEQ-KPLVSSLCISP----DGKILLTA-SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred eeeeeccC-CCccceEEEcC----CCCEEEec-cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc
Confidence 77743322 46789999998 55555544 378999999999999999999999999999876 333 44445
Q ss_pred CCCcEEEEEcCC
Q 005325 343 DCSQIPSYFIPD 354 (702)
Q Consensus 343 ~d~~I~~~~ip~ 354 (702)
...-|.+|.+..
T Consensus 210 ~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 210 AERGITVWVVEK 221 (541)
T ss_pred cccceeEEEEEc
Confidence 566677777654
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=5.8e-09 Score=111.16 Aligned_cols=243 Identities=15% Similarity=0.203 Sum_probs=153.4
Q ss_pred EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--C-----ceEEEecCCCccceEEecCCCcE-EEEecCCCEE
Q 005325 98 KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--G-----KHYSLRIPRMGRDMAYNSWSCDL-LCAASSPELY 169 (702)
Q Consensus 98 ~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g-----~~~~~~i~~~~~~l~~~~~s~~l-lv~s~d~~V~ 169 (702)
.|.+|... +..+..++ +.+.+++++.|.+|++|.+. | ..+.+....+.+.+.....-.++ ++++.|+.|+
T Consensus 730 nf~GH~~~-iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEK-IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred cccCcHHH-hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 55666443 34444454 44788999999999999875 2 11222222222222222222233 6788899999
Q ss_pred EEECCCCeEEEEeec---CC--CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 170 RINLEQGRFLSSLNT---QS--PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 170 vwdl~~g~~~~~l~~---h~--~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
+||.--|+.+..+.. |. +.|.|+.--..+-+++.|+...+|+++|.|+..-+..+.... ....+.-+.+++..|
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-a~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-APGPNALTRAIAVAD 886 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc-CCCCchheeEEEecc
Confidence 999988887664322 22 234444311122344444778999999999988777776541 223357789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE-EeCCCCceeEEecCCC
Q 005325 245 NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRI-WDPETGESMTSIEPTA 323 (702)
Q Consensus 245 d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I-Wd~~tg~~l~~i~~h~ 323 (702)
. |+.+++|-++|.|.+.|.|+++.+...... .-....++- | .+..++.+..|.++.| |...+|.......+.+
T Consensus 887 ~-GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaa-p---sdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 887 K-GNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAA-P---SDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred C-cchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcC-c---hhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 9 999999999999999999999876522211 112223332 2 2445555667999999 9988887766666534
Q ss_pred CceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 324 GKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 324 ~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
.+..-+ -.-+.-++++..+..+.+|.
T Consensus 961 epahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 961 EPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cchhhh--hccCceeEEeccCcEEEEEe
Confidence 333211 12355678888877777774
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=2.2e-06 Score=104.96 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=154.9
Q ss_pred cccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecC--------------CceEEEEEEcCCCCEEEEE
Q 005325 58 DLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLD--------------SEIINFEVLADDYSKLAFL 123 (702)
Q Consensus 58 d~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~--------------~~vv~~~~ls~dg~~Las~ 123 (702)
.|.|| ..+++++++..|+++-+..+.|.+||............. ..+ ..+++.++++.|+.+
T Consensus 566 ~l~~P---~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P-~GIavd~~gn~LYVa 641 (1057)
T PLN02919 566 PLKFP---GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRP-QGLAYNAKKNLLYVA 641 (1057)
T ss_pred cCCCC---ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCC-cEEEEeCCCCEEEEE
Confidence 34555 356888876655888888999999998764332222100 011 234455666666555
Q ss_pred EC-CCeEEEEecCCceEEEec-------------------CCCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEe
Q 005325 124 CA-DRSISLHAKYGKHYSLRI-------------------PRMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSL 182 (702)
Q Consensus 124 s~-D~~I~iw~~~g~~~~~~i-------------------~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l 182 (702)
.. .+.|++++..+....+-. .....++++.+.+..++++.. ++.|++||..++... .+
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 44 567888776543222110 012236777776777777654 567999999887543 22
Q ss_pred ecC---------------CCCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCcceeEEecc------c-CCC--------
Q 005325 183 NTQ---------------SPALNVVSRSKLHG-LIACGGEDGAVECFDMRMRSSAARINAV------A-PAG-------- 231 (702)
Q Consensus 183 ~~h---------------~~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~~v~~l~~~------~-~~~-------- 231 (702)
.+. ....+.|+++|++. ++++-+.++.|++||+.++......... . ...
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 111 12456799999987 6666677899999999876532111000 0 000
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccC------------CCCeEEEEEeeccCCCCCeEEE
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMF------------DSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~------------~~~I~sl~fsp~~~~~~~ll~s 299 (702)
..-.....|+|+++ |..+++-+.++.|++||..++....+.+... -.....|+++| ++.++++
T Consensus 801 ~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~----dG~lyVa 875 (1057)
T PLN02919 801 VLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE----NGRLFVA 875 (1057)
T ss_pred hhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC----CCCEEEE
Confidence 00123468999999 8888888999999999998877665433210 01357889987 4455555
Q ss_pred -eCCCEEEEEeCCCCce
Q 005325 300 -TDNHIVRIWDPETGES 315 (702)
Q Consensus 300 -s~Dg~V~IWd~~tg~~ 315 (702)
+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 4799999999998765
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=1.3e-08 Score=121.17 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=135.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS 140 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~ 140 (702)
..|.|+.-+|...+ .+||+.||.|++|....... .+... ...-++-+.++..|+++..+..||.+.+|......+.
T Consensus 2209 ~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTA-GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred CceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeecc-CcchhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 45778888898888 89999999999999877322 22222 2234556668889999999999999999988743332
Q ss_pred Eec-C-CCccceEEecCCCcEEEEec---CCCEEEEECCC--CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 141 LRI-P-RMGRDMAYNSWSCDLLCAAS---SPELYRINLEQ--GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 141 ~~i-~-~~~~~l~~~~~s~~llv~s~---d~~V~vwdl~~--g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
..- + +...++.|.. .-++.++. ++.+.+||..- +..+-. +.|.+.++|+++.|.+++|++|+.+|.|++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 211 1 1122555554 33444433 34699998532 222222 7899999999999999999999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
|++.++.++++.. ++ . ..+|++|+..|.|+||++.....+.
T Consensus 2364 D~rqrql~h~~~~---------------~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA---------------LD-T-REYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred ehHHHHHHHHhhh---------------hh-h-hheeeccCcccceEEEEccccchhh
Confidence 9998887666543 33 3 6799999999999999998865554
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=9.2e-07 Score=99.10 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=125.8
Q ss_pred eEEEEecCCceEE--EecCCCccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 128 SISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 128 ~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
.|.+++..|.... +..+.......+.|.+..++.++.. ..|++||+.+++... +..........+|+|++..|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEE
Confidence 5566676654322 2222233366777777777665433 259999999887532 222223345789999998666
Q ss_pred E-EEcCCe--EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeecc
Q 005325 203 C-GGEDGA--VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG--KVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 203 s-gs~DG~--V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG--~V~lwDlrs~~~l~~~~h~ 276 (702)
. .+.+|. |.+||+.+++. ..+..+ ...+...+|+|+ |..|+..+. +| .|.++|+.+++...+...
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~-~~lt~~------~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~- 348 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL-TRITRH------RAIDTEPSWHPD-GKSLIFTSERGGKPQIYRVNLASGKVSRLTFE- 348 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe-EECccC------CCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCEEEEecC-
Confidence 4 555665 77788887653 333333 345678899999 888776553 33 577778877775544322
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeC-CC--EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeC-CCcEEEEEc
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTD-NH--IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALD-CSQIPSYFI 352 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~-Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~-d~~I~~~~i 352 (702)
+......+|+| ++..++.++. ++ .|.++|+.++... .+... .......|+|++.+|+.+.. ++.-.+|.+
T Consensus 349 -g~~~~~~~~Sp---DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 349 -GEQNLGGSITP---DGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred -CCCCcCeeECC---CCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 22334578998 4555555553 33 4666788777643 33332 22234579999987766554 444334433
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-07 Score=96.18 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=137.7
Q ss_pred eecccCCCceeEEEECCCCCEE-EEEEecCCcEEEEEcCCce---------------------EEEeee-----------
Q 005325 56 IQDLWFETATTKIRETPDGEFL-IVSGIYPPQVKVYELRQLS---------------------LKFERH----------- 102 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~l-latGs~dg~I~vwdl~~~~---------------------~~~~~h----------- 102 (702)
+..++..+.|+.|+|.+++... +...+.|.+|++|.+.... +....+
T Consensus 78 LkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prR 157 (433)
T KOG1354|consen 78 LKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRR 157 (433)
T ss_pred hhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeee
Confidence 4445667889999999887642 5667889999999876511 111111
Q ss_pred ----cCCceEEEEEEcCCCCEEEEEECCCeEEEEecC---CceEEEecCCC--------ccceEEecCCCcEEE-EecCC
Q 005325 103 ----LDSEIINFEVLADDYSKLAFLCADRSISLHAKY---GKHYSLRIPRM--------GRDMAYNSWSCDLLC-AASSP 166 (702)
Q Consensus 103 ----~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~---g~~~~~~i~~~--------~~~l~~~~~s~~llv-~s~d~ 166 (702)
...-.+..+.+..|+..++++ .|=.|.+|++. +....+.+... ..+..|+|..|.+++ .++.|
T Consensus 158 v~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 158 VYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred eccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC
Confidence 111123444566676666654 46679999887 23323333221 125678888888554 56678
Q ss_pred CEEEEECCCCeEEE----Ee------------ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC-CCcceeEEecccC
Q 005325 167 ELYRINLEQGRFLS----SL------------NTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR-MRSSAARINAVAP 229 (702)
Q Consensus 167 ~V~vwdl~~g~~~~----~l------------~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~-t~~~v~~l~~~~~ 229 (702)
+|++.|+.+..+.- .+ ..-.+.|..+.|++.|+++++-.. -+|++||+. ..+++.++..|..
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 99999987543211 01 111246889999999999998665 799999994 6678888887732
Q ss_pred C------CCCCCC---eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 230 A------GDADQE---VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 230 ~------~~~~~~---Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
. .-.... -.-++|+-+ +.++++|+....+++|++..+.
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~-~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGN-DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCC-cceEecccccceEEEecCCCCc
Confidence 1 001122 246889988 8899999999999999976544
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=6.3e-06 Score=101.00 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=150.2
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEecCCceEEEecC----------------CCccceEEecCCCcEEEEecCC-CEEEEE
Q 005325 111 EVLAD-DYSKLAFLCADRSISLHAKYGKHYSLRIP----------------RMGRDMAYNSWSCDLLCAASSP-ELYRIN 172 (702)
Q Consensus 111 ~~ls~-dg~~Las~s~D~~I~iw~~~g~~~~~~i~----------------~~~~~l~~~~~s~~llv~s~d~-~V~vwd 172 (702)
+.+++ ++..+++-+.++.|.+|+..|........ .....+++.+.+..|+++...+ .|.++|
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 34544 45566666778889999888765432221 0123667777666688877654 588899
Q ss_pred CCCCeEEEEeecC-----------------CCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccC---C-
Q 005325 173 LEQGRFLSSLNTQ-----------------SPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAP---A- 230 (702)
Q Consensus 173 l~~g~~~~~l~~h-----------------~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~---~- 230 (702)
+.++. +.++.+. -.....|+|+| ++.++++.+.++.|++||..++... .+..... .
T Consensus 653 ~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~ 730 (1057)
T PLN02919 653 FVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLN 730 (1057)
T ss_pred cCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCC
Confidence 87765 3333210 11346799999 5577788788899999999876432 2221100 0
Q ss_pred -----CCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcCCCeEEEEee-c--------cC-----------CCCeEEE
Q 005325 231 -----GDADQEVTALEFDSNGGF-LMGVGSSTGKVLIYDLRSSYPIRVKD-H--------MF-----------DSPIVDI 284 (702)
Q Consensus 231 -----~~~~~~Vtslafspd~g~-~LasGs~DG~V~lwDlrs~~~l~~~~-h--------~~-----------~~~I~sl 284 (702)
...-...+.|+|+|+ +. ++++-+.++.|++||+.++....+.. . .. -.....|
T Consensus 731 g~~~~~~~~~~P~GIavspd-G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPD-LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCccccccccCccEEEEeCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 001134577999999 76 45566667999999998765322110 0 00 0012578
Q ss_pred EEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecC-------------CCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 285 KWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEP-------------TAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 285 ~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~-------------h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
+|+| ++.+++ -+.++.|++||..++........ +-.....|++.+++.++++.+.+..|++|
T Consensus 810 avd~----dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 810 LCAK----DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred eEeC----CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 8886 444444 44799999999988766543211 11246789999999888887888999999
Q ss_pred EcCC
Q 005325 351 FIPD 354 (702)
Q Consensus 351 ~ip~ 354 (702)
.+..
T Consensus 886 d~~~ 889 (1057)
T PLN02919 886 DLNK 889 (1057)
T ss_pred ECCC
Confidence 8754
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=6.2e-06 Score=99.35 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=176.7
Q ss_pred ceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------------c-----e-------EEEeee----
Q 005325 52 RVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------------L-----S-------LKFERH---- 102 (702)
Q Consensus 52 rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------------~-----~-------~~~~~h---- 102 (702)
.+|++.. ++..|.|++||||+.. ||..+.+++|.+..-.- . + -.|.+.
T Consensus 112 ~~E~VG~--vd~GI~a~~WSPD~El-la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 112 EIEIVGS--VDSGILAASWSPDEEL-LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred eeEEEEE--EcCcEEEEEECCCcCE-EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence 3455543 5689999999999998 66666677776653211 0 0 011000
Q ss_pred -------------------cCCceEEEEEEcCCCCEEEEEEC----C--CeEEEEecCCceEEEecCCCcc--ceEEecC
Q 005325 103 -------------------LDSEIINFEVLADDYSKLAFLCA----D--RSISLHAKYGKHYSLRIPRMGR--DMAYNSW 155 (702)
Q Consensus 103 -------------------~~~~vv~~~~ls~dg~~Las~s~----D--~~I~iw~~~g~~~~~~i~~~~~--~l~~~~~ 155 (702)
.+.. ...+.|-.||.++|+.+- . +.|+||+..|....+.-+..+- .++|-|.
T Consensus 189 aa~~~~~p~~~~~d~~~~s~dd~-~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPs 267 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLSWDDG-RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPS 267 (928)
T ss_pred hhhhccCCCCCccccCccccCCC-ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCC
Confidence 0111 123345678999987664 3 7899999998777665555444 7777776
Q ss_pred CCcEEEEec---CCCEEEEE---CCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--ceeEEecc
Q 005325 156 SCDLLCAAS---SPELYRIN---LEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS--SAARINAV 227 (702)
Q Consensus 156 s~~llv~s~---d~~V~vwd---l~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~--~v~~l~~~ 227 (702)
+.-+++... ...|..|. +..|.|.-.+......|..|.||+++.+||....|. |.+|-..+.. ..+.+...
T Consensus 268 G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~ 346 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS 346 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc
Confidence 655544443 13466664 334455544444556899999999999999988655 9999888754 23334433
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
. ...+..+.|+|.....|.+.+.+|.+..+++.- ...+..+ ..| ++...++.-|...|.|
T Consensus 347 ~-----~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-----~v~~s~~-------~~~---~D~g~vaVIDG~~lll 406 (928)
T PF04762_consen 347 S-----SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-----DVSRSPG-------SSP---NDNGTVAVIDGNKLLL 406 (928)
T ss_pred C-----CCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----EEEecCC-------CCc---cCceEEEEEeCCeEEE
Confidence 1 244566999998788899999989888777431 1111000 011 1333445556667777
Q ss_pred EeCCCCc-----eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 308 WDPETGE-----SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 308 Wd~~tg~-----~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
-.++..- ....+.. ..+|++++|+++...+++-..++.|.+|..+
T Consensus 407 Tpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred ecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 6665431 2345555 7799999999998889999999999998843
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=2.7e-08 Score=109.54 Aligned_cols=278 Identities=15% Similarity=0.214 Sum_probs=175.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEe--cCCce--EEEecCCCccceEEecCCCc--EEEEecCCCEEEEECCCC---eE
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHA--KYGKH--YSLRIPRMGRDMAYNSWSCD--LLCAASSPELYRINLEQG---RF 178 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~--~~g~~--~~~~i~~~~~~l~~~~~s~~--llv~s~d~~V~vwdl~~g---~~ 178 (702)
+..+.++|.|.-+|.++.-|.+.+.- .+... ..-..|-+..++.+.+.... -++..+....++|++... ..
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 44566778888888888877655542 11111 11112333335555544332 344455556778987543 34
Q ss_pred EEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 179 LSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 179 ~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
...+.+|+..|+.+.|+|++ .++++++.|-.|.+||+++. .++..+..- ....+.|+|+.-++..+ +.+..
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------~s~asqVkwnyk~p~vl-asshg 179 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------RSAASQVKWNYKDPNVL-ASSHG 179 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc------cccCceeeecccCcchh-hhccC
Confidence 45567899999999999998 78999999999999999975 456665554 46778899998734444 44777
Q ss_pred CeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC--ceeEEecCCCCceeEEEEE
Q 005325 257 GKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG--ESMTSIEPTAGKINDVCVF 332 (702)
Q Consensus 257 G~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg--~~l~~i~~h~~~I~~v~~~ 332 (702)
..|.|||+|.+. |+. ++.| -..|..+.|+. .-.+.++.++.|++|++||.... +.-..+.. ..+|.--++.
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr--~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~ 254 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGH--VSSVNSIDFNR--FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYL 254 (1081)
T ss_pred CceEEEeccCCCcceEEeccc--ceeeehHHHhh--hhhhhhcccCCCCceeeecccccccccceeccc-cCcceecccc
Confidence 889999999754 555 6776 57889999875 22455666778999999998743 33344444 6678877888
Q ss_pred cC-CCEEEEEeCCCcE-EEEEcCC----------CCCCCCccCcccccchhhhcCCcc--cccc--CccccCHHHHhhcC
Q 005325 333 KD-SGLLLLALDCSQI-PSYFIPD----------LGPTPKWCSPIESMTEELEEGGQT--TIYD--NYKFLTREDLEKLN 396 (702)
Q Consensus 333 p~-~~~l~~a~~d~~I-~~~~ip~----------lg~ap~Wcsfld~lteelee~~~~--~~yd--~ykfvt~~el~~l~ 396 (702)
|- .++++.-..++.+ .++.... ..|.-.+...-|-+.|-++....+ ..|| +|..||...-..|.
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 83 3444444433332 2222211 122223444556677777665433 3354 56668754434444
Q ss_pred C
Q 005325 397 L 397 (702)
Q Consensus 397 l 397 (702)
|
T Consensus 335 l 335 (1081)
T KOG0309|consen 335 L 335 (1081)
T ss_pred e
Confidence 4
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=4.8e-06 Score=88.30 Aligned_cols=242 Identities=13% Similarity=0.115 Sum_probs=166.1
Q ss_pred ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEec--CC--------Cccce
Q 005325 82 IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRI--PR--------MGRDM 150 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i--~~--------~~~~l 150 (702)
..+|.=.+|.+.---.-+.+|++-.-.-.-.++.||..+++ +.-|.|.++++.. ...++.+ |- +...+
T Consensus 243 D~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps 321 (668)
T COG4946 243 DHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS 321 (668)
T ss_pred cccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHH
Confidence 34444444444332223445544422334446778888765 4567899998873 3333332 21 11111
Q ss_pred ---E-EecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC-eEEEEECCCCcceeEEe
Q 005325 151 ---A-YNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG-AVECFDMRMRSSAARIN 225 (702)
Q Consensus 151 ---~-~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG-~V~iWD~~t~~~v~~l~ 225 (702)
. +...+.++++.-+-|..++.+...+-.++. +|...|.-..+.-+..-++.|..|| .|-|+|.+++.. ..+.
T Consensus 322 kyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e 398 (668)
T COG4946 322 KYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIE 398 (668)
T ss_pred HhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEee
Confidence 1 344566677777778888888776655442 5667788888887888899999999 899999998764 4444
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-C---
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-D--- 301 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~--- 301 (702)
.. -+.|.++..+|+ |..++++.....|.++|+.++.+..+-... ..-|+.+.||| +..+++-+ -
T Consensus 399 ~~------lg~I~av~vs~d-GK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~----nsr~iAYafP~gy 466 (668)
T COG4946 399 KD------LGNIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHP----NSRWIAYAFPEGY 466 (668)
T ss_pred CC------ccceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcC----CceeEEEecCcce
Confidence 44 388999999999 999999999999999999999887643332 46799999998 66666644 2
Q ss_pred -CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 302 -NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 302 -Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
-..|+|+|+.+++.+..-.+ .+.=.+-+|.|++..|..
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeeEEEEecCCCeEEEecCC-cccccCcccCCCCcEEEE
Confidence 56799999999888766555 444445578888876543
No 278
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=5.5e-09 Score=116.69 Aligned_cols=252 Identities=13% Similarity=0.100 Sum_probs=168.1
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEEC-CC-eEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCA-DR-SISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~-~I~iw~~~g 136 (702)
+...-+|++||-+.++ |+.|+..|.|++|++.+..+ ....| .+. ++.+--+-||..+++.+. .. ...+|+...
T Consensus 1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH-~Sa-vT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCH-QSA-VTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccccccc-ccc-cccccccCCcceeeeeccccCchHHHhcccc
Confidence 4577899999999999 89999999999999998554 33344 333 444445667777665544 33 467887763
Q ss_pred ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~~llasgs~DG~V~i 212 (702)
.......-....++.|......-++++....+.+||++++..+.++-. ..-.-++..|+|...+++- || .+
T Consensus 1177 ~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vL 1251 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VL 1251 (1516)
T ss_pred ccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--ee
Confidence 211111112223555555555567777778899999999987766322 1223478889999988864 56 48
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCC
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~ 292 (702)
||+|..+.++.|... .---.-.|+|+ |..++..+ -|||+|+.+.++.... ..-..|.|+.
T Consensus 1252 WDvR~~~aIh~FD~f-------t~~~~G~FHP~-g~eVIINS-----EIwD~RTF~lLh~VP~---Ldqc~VtFNs---- 1311 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQF-------TDYGGGGFHPS-GNEVIINS-----EIWDMRTFKLLHSVPS---LDQCAVTFNS---- 1311 (1516)
T ss_pred eeeccHHHHhhhhhh-------eecccccccCC-CceEEeec-----hhhhhHHHHHHhcCcc---ccceEEEecc----
Confidence 999998888887765 22234469999 99988866 5899999887763322 1235667773
Q ss_pred CCCeEEEeC------------------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEE
Q 005325 293 ERPKLITTD------------------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 293 ~~~ll~ss~------------------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a 341 (702)
.+.++.+.. -...+-+|......+.+|+. ..+|.++|-.|...++.+.
T Consensus 1312 tG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1312 TGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred Cccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence 333333221 12345566666777888888 7788888888866655544
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=5.3e-06 Score=88.88 Aligned_cols=270 Identities=13% Similarity=0.053 Sum_probs=162.2
Q ss_pred eeEEEECCCCCEEEEEEecCCc---------------EEEEEcCCceEEEeeecCCce--EE-EEEEcCCCCEEEEEECC
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQ---------------VKVYELRQLSLKFERHLDSEI--IN-FEVLADDYSKLAFLCAD 126 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~---------------I~vwdl~~~~~~~~~h~~~~v--v~-~~~ls~dg~~Las~s~D 126 (702)
|.-+.|||.++| |+|=++.+. +.|||+.+..+.+........ .. +.-++-+..++|-. ..
T Consensus 74 V~~~~fSP~~kY-L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 74 VKYLDFSPNEKY-LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred ceecccCcccce-eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 567889999999 777665444 899999885443332211111 11 33345554555544 34
Q ss_pred CeEEEEecCCceEEEec----CCCccceEEecCCCc--EEEE-----ecCCCEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005325 127 RSISLHAKYGKHYSLRI----PRMGRDMAYNSWSCD--LLCA-----ASSPELYRINLEQGRFLSSLNTQSPALNVVSRS 195 (702)
Q Consensus 127 ~~I~iw~~~g~~~~~~i----~~~~~~l~~~~~s~~--llv~-----s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~s 195 (702)
..+.||.+.+......+ +....+..+.|.+.. |+.- +....+.+|.+..+..+.+-..-...-..+.|+
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 46888875432221111 222335555554221 2221 234567888887666655433322233467888
Q ss_pred CCCCEEEEEEc-----------CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE--eCCCeEEEE
Q 005325 196 KLHGLIACGGE-----------DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG--SSTGKVLIY 262 (702)
Q Consensus 196 p~~~llasgs~-----------DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG--s~DG~V~lw 262 (702)
+.|.+|++-.. ...++|++++...+-..... .++|...+|.|. +..|++. -..-.+.++
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~-------~~pVhdf~W~p~-S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDL-------KDPVHDFTWEPL-SSRFAVISGYMPASVSVF 303 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecccccceeccc-------cccceeeeeccc-CCceeEEecccccceeec
Confidence 88876554221 24678888874443322222 489999999998 7776654 478899999
Q ss_pred EcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-C--CCEEEEEeCCCCceeE-EecCCCCceeEEEEEcCCCEE
Q 005325 263 DLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-D--NHIVRIWDPETGESMT-SIEPTAGKINDVCVFKDSGLL 338 (702)
Q Consensus 263 Dlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~--Dg~V~IWd~~tg~~l~-~i~~h~~~I~~v~~~p~~~~l 338 (702)
|++.. ...... ..+=+.+.|+| ...++|+++ + .|.|-|||......+. .+.+ ....-+.|+|++.++
T Consensus 304 ~lr~N-l~~~~P---e~~rNT~~fsp---~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~ 374 (561)
T COG5354 304 DLRGN-LRFYFP---EQKRNTIFFSP---HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFY 374 (561)
T ss_pred ccccc-eEEecC---CcccccccccC---cccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEE
Confidence 99987 222222 23456788998 455666655 2 7889999998644433 4544 334446799999998
Q ss_pred EEEeCCC------cEEEEEcC
Q 005325 339 LLALDCS------QIPSYFIP 353 (702)
Q Consensus 339 ~~a~~d~------~I~~~~ip 353 (702)
.++.... .|.+|.|-
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EecCCCcccccCcceEEEEec
Confidence 8886544 46777664
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=4e-06 Score=84.45 Aligned_cols=217 Identities=16% Similarity=0.191 Sum_probs=125.0
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++||+ +|.+..++-|.|=+.... +-+-..|-...+|+.-+ -..++||||+.. ||.+.
T Consensus 6 ~~~Gk--~lAi~qd~~iEiRsa~Dd------f~si~~kcqVpkD~~PQ--------------WRkl~WSpD~tl-La~a~ 62 (282)
T PF15492_consen 6 SSDGK--LLAILQDQCIEIRSAKDD------FSSIIGKCQVPKDPNPQ--------------WRKLAWSPDCTL-LAYAE 62 (282)
T ss_pred cCCCc--EEEEEeccEEEEEeccCC------chheeEEEecCCCCCch--------------heEEEECCCCcE-EEEEc
Confidence 46777 688888888877655433 11111111112222111 246899999998 88889
Q ss_pred cCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEE
Q 005325 83 YPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLC 161 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv 161 (702)
..|+|++||+....+ ..... +. +..|...-+++ .+.+ ... ....|+..|++
T Consensus 63 S~G~i~vfdl~g~~lf~I~p~-----~~---~~~d~~~Aiag----l~Fl-------------~~~---~s~~ws~ELlv 114 (282)
T PF15492_consen 63 STGTIRVFDLMGSELFVIPPA-----MS---FPGDLSDAIAG----LIFL-------------EYK---KSAQWSYELLV 114 (282)
T ss_pred CCCeEEEEecccceeEEcCcc-----cc---cCCccccceee----eEee-------------ccc---cccccceeEEE
Confidence 999999999976222 11111 00 01110000000 0000 000 11245666777
Q ss_pred EecCCCEEEEECCC-----CeEEEEeec---CCCCeEEEEEcCCCCEEEEEEc----CC-------eEEEEECCCCccee
Q 005325 162 AASSPELYRINLEQ-----GRFLSSLNT---QSPALNVVSRSKLHGLIACGGE----DG-------AVECFDMRMRSSAA 222 (702)
Q Consensus 162 ~s~d~~V~vwdl~~-----g~~~~~l~~---h~~~V~~l~~sp~~~llasgs~----DG-------~V~iWD~~t~~~v~ 222 (702)
....|.+.-+-+.. .+...+|.. +...|+++.++|.+++|++|+. ++ -+..|-+-++.+-.
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE
Confidence 77777766554322 223333332 3568999999999999988875 11 26677665443222
Q ss_pred EEeccc-----------------------CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 223 RINAVA-----------------------PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 223 ~l~~~~-----------------------~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
...... ........|..|..||| |..||+...+|.|.||++-+-.+..
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhc
Confidence 111000 00123578999999999 9999999999999999998755443
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=2.2e-07 Score=96.76 Aligned_cols=167 Identities=16% Similarity=0.247 Sum_probs=115.9
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
.+...+.+++++++ +|++..+....++++....- .........++.....+..+..+.++.+-+..|..+.
T Consensus 63 ~a~~~~~~s~~~~l-lAv~~~~K~~~~f~~~~~~~------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~-- 133 (390)
T KOG3914|consen 63 LAPALVLTSDSGRL-VAVATSSKQRAVFDYRENPK------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYS-- 133 (390)
T ss_pred ccccccccCCCceE-EEEEeCCCceEEEEEecCCC------cceeeeEeecccCcceeeeeeccceEEEEeecCCcee--
Confidence 44556667888887 88888888877777655321 1112333334444455555555666655444333322
Q ss_pred cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCccee
Q 005325 143 IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA 222 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~ 222 (702)
+.+|....+.. ..+-+|-+.++.|+|+|+.++|+++..|..|++-....--.+.
T Consensus 134 -------------------------~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie 187 (390)
T KOG3914|consen 134 -------------------------FDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE 187 (390)
T ss_pred -------------------------eeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh
Confidence 23455544443 4456899999999999999999999999999987766544454
Q ss_pred EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 223 RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 223 ~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
.+.. +|..-|..|+.-++ ..|++|+.|++|++||+++++.+.
T Consensus 188 sfcl-----GH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 188 SFCL-----GHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred hhcc-----ccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCccc
Confidence 4443 35899999999876 679999999999999999999875
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=2.3e-05 Score=80.44 Aligned_cols=211 Identities=14% Similarity=0.117 Sum_probs=138.5
Q ss_pred CCCEEEEEECCCeEEEEecCCceEE-EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-----CCCCe
Q 005325 116 DYSKLAFLCADRSISLHAKYGKHYS-LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-----QSPAL 189 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~g~~~~-~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-----h~~~V 189 (702)
++..+++-...+.|..|+..+.... +..+. ...+++......++++.. +.+.++|+.+++....+.. .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 5555555556888888888865544 34444 456666655566766665 5556669999866544433 23478
Q ss_pred EEEEEcCCCCEEEEEEcC--------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE-EEeCCCeEE
Q 005325 190 NVVSRSKLHGLIACGGED--------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG-VGSSTGKVL 260 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~D--------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La-sGs~DG~V~ 260 (702)
+.+++.|+|++.++.... |.|..++.. ++.......- ...+.|+|+|+ +..|+ +-+..+.|.
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------~~pNGi~~s~d-g~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------GFPNGIAFSPD-GKTLYVADSFNGRIW 159 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-------SSEEEEEEETT-SSEEEEEETTTTEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-------ccccceEECCc-chheeecccccceeE
Confidence 999999999988876654 568888888 5533333332 56789999999 87665 667788999
Q ss_pred EEEcCCCe--EE--E-EeeccCC-CCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEE-
Q 005325 261 IYDLRSSY--PI--R-VKDHMFD-SPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVF- 332 (702)
Q Consensus 261 lwDlrs~~--~l--~-~~~h~~~-~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~- 332 (702)
.|++.... .. . +...... ...-.+++.. .+.+.++. ..+.|.+++.. |+.+..+......+++++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~----~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS----DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT----TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcC----CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 99996422 11 1 2222111 1367899985 55565554 68999999988 99998887744689999995
Q ss_pred cCCCEEEEEe
Q 005325 333 KDSGLLLLAL 342 (702)
Q Consensus 333 p~~~~l~~a~ 342 (702)
++...|++.+
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 5666666554
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=8.2e-06 Score=82.92 Aligned_cols=224 Identities=17% Similarity=0.148 Sum_probs=138.5
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEE--EEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCCccceEEecCCCcE
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFE--VLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRMGRDMAYNSWSCDL 159 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~--~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~~~~l~~~~~s~~l 159 (702)
+++|..||..+....+............ .+. ++..+++++.++.|..|+.. |... ...++...... .......+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccccc
Confidence 5788889987766655554311111122 222 44777778899999999985 5433 23333322222 24455567
Q ss_pred EEEecCCCEEEEECCCCeEEEEe-ecCCC---CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCC--
Q 005325 160 LCAASSPELYRINLEQGRFLSSL-NTQSP---ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDA-- 233 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l-~~h~~---~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~-- 233 (702)
++++.++.|+.+|+.+|+.+..+ ..... ..........+..+++++.++.|..+|+.+++.+............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 88888889999999999998874 43311 1122222333778888888999999999999998888775211000
Q ss_pred --CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 234 --DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 234 --~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
...+.+-.+..+ + .+.+++.+|.+..+|+.+++.+..... . .+..+... .++.+++++.++.|.+||+.
T Consensus 160 ~~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~~~~--~-~~~~~~~~----~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 160 SSFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWSKPI--S-GIYSLPSV----DGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEEECS--S--ECECEEC----CCTEEEEEETTTEEEEEETT
T ss_pred eeecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEEecC--C-CccCCcee----eCCEEEEEeCCCEEEEEECC
Confidence 011223333334 5 777778788644449999997753221 2 23331122 36667667789999999999
Q ss_pred CCceeEE
Q 005325 312 TGESMTS 318 (702)
Q Consensus 312 tg~~l~~ 318 (702)
+|+.+..
T Consensus 231 tG~~~W~ 237 (238)
T PF13360_consen 231 TGKVVWQ 237 (238)
T ss_dssp TTEEEEE
T ss_pred CCCEEeE
Confidence 9987653
No 284
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=2.4e-07 Score=104.70 Aligned_cols=179 Identities=15% Similarity=0.228 Sum_probs=140.7
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
..++.|+....+..+|+.+.+..+......+.|.-+.. ++.++.+|...|+|.+-|+++.+.++++.+| .+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH------s~s 219 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH------SGS 219 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc------ccc
Confidence 34778888888999999999988887777766766664 4689999999999999999999999999999 788
Q ss_pred eEEEEEcCCCCCEEEEEeC---------CCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEE
Q 005325 237 VTALEFDSNGGFLMGVGSS---------TGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVR 306 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~---------DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~ 306 (702)
|..+..+ |+.|++++. |.-|+|||+|+-+.+. +.-+ -.| .-+.|+|.+ ...+++++..|.+.
T Consensus 220 iSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P-~flrf~Psl--~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 220 ISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGP-QFLRFHPSL--TTRLAVTSQSGQFQ 291 (1118)
T ss_pred eeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCc-hhhhhcccc--cceEEEEeccccee
Confidence 8887776 667776654 4568999999876554 2222 122 557899965 67888888899999
Q ss_pred EEeCCC-Cc---eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 307 IWDPET-GE---SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 307 IWd~~t-g~---~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+-|..+ +. -+..+.+....|..+++++++..++.+..++.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999543 22 2344555455699999999999999999999999997
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.61 E-value=7.3e-07 Score=89.42 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=118.4
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeec---CCC---CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--ceeEEecccCC
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNT---QSP---ALNVVSRSKLHGLIACGGEDGAVECFDMRMRS--SAARINAVAPA 230 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~---h~~---~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~--~v~~l~~~~~~ 230 (702)
++.+...|.|.++-.........|.+ -.- ...++.|++.+.-++++-.+|.+.+-+..... .++.+..|
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H--- 164 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH--- 164 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc---
Confidence 66677778887775443322222222 111 23467899999889999999999966554332 34466666
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-eEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 231 GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-YPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 231 ~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~-~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
..++....|+..+.+.+.+|+.||.+..||+|.. +.+. .+-| ...|.+|.-+| .....+++++-|-.|++
T Consensus 165 ---e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH--~~GV~SI~ss~--~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 165 ---EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH--TSGVVSIYSSP--PKPTYIATGSYDECIRV 237 (339)
T ss_pred ---ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceee--ecceEEEecCC--CCCceEEEeccccceee
Confidence 7889999998776778999999999999999943 3444 3445 67899999987 22334555556999999
Q ss_pred EeCC-CCceeEEecCCCCceeEEEEEcC
Q 005325 308 WDPE-TGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 308 Wd~~-tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
||.+ -++++..-.. .+.|+.++++|.
T Consensus 238 ~DtRnm~kPl~~~~v-~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 238 LDTRNMGKPLFKAKV-GGGVWRIKHHPE 264 (339)
T ss_pred eehhcccCccccCcc-ccceEEEEecch
Confidence 9999 4888877666 789999999993
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.4e-05 Score=88.68 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=121.6
Q ss_pred ceeEEEECCCCCEEEEEEec---CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE
Q 005325 64 ATTKIRETPDGEFLIVSGIY---PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS 140 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~---dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~ 140 (702)
.....+|||||+.+++..++ .+.|.++|+.+........... ......++|||..|+.....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~-------------- 253 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAP-------------- 253 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEcc--------------
Confidence 45678999999863443333 3678889987743322111122 23345578888887654421
Q ss_pred EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC--eEEEEECCC
Q 005325 141 LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG--AVECFDMRM 217 (702)
Q Consensus 141 ~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG--~V~iWD~~t 217 (702)
..+..|+++|+.++.. ..+..+........|+|+++.|+..+. .+ .|.++|+.+
T Consensus 254 ----------------------~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 254 ----------------------KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred ----------------------CCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 0124577788877764 344444433345679999987777664 23 578888877
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST---------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D---------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
+......... .. ...|+|+ |..|+..+.. ..|.+.|+.++....+... + ......|+|
T Consensus 311 g~~~rlt~~g-------~~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~-~~~~p~~SP 377 (419)
T PRK04043 311 GSVEQVVFHG-------KN--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--G-VNQFPRFSS 377 (419)
T ss_pred CCeEeCccCC-------Cc--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--C-CcCCeEECC
Confidence 6543222111 11 2489999 8888765543 3788889988876554433 1 223578998
Q ss_pred ccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeE
Q 005325 289 SINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKIND 328 (702)
Q Consensus 289 ~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~ 328 (702)
++..++.++. ...|.+.++. |.....+....+.|..
T Consensus 378 ---DG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 378 ---DGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQS 416 (419)
T ss_pred ---CCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence 4555555542 3346666664 3333333332344443
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=5.9e-07 Score=88.65 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=96.9
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCc-eEEEecCCCcc---ceEEecCCCcEE-----EEecCCCEEEEECCCCeEEEEee
Q 005325 113 LADDYSKLAFLCADRSISLHAKYGK-HYSLRIPRMGR---DMAYNSWSCDLL-----CAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 113 ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~~~~~---~l~~~~~s~~ll-----v~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
++--++.++++..|+.+.+.+.... ...-+++.... +..+......+. ....-+..+.|++.....+..-.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 3334477889999999998876531 11112222111 233333222222 22233456666665443332222
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 005325 184 TQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI 261 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l 261 (702)
.....|++++-+|.. +++++|+.||.|-+||.|+.. ++..+..| ..+|.-+-|+|.++..|++++.||.+..
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah------k~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH------KAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh------hhhhhheeccCCCchheeEecCCCcEEE
Confidence 223359999999876 788899999999999999874 34445555 7999999999988999999999999999
Q ss_pred EEcCC
Q 005325 262 YDLRS 266 (702)
Q Consensus 262 wDlrs 266 (702)
||-.+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99764
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=5e-07 Score=99.87 Aligned_cols=281 Identities=11% Similarity=0.088 Sum_probs=182.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCC--C-CEEEEEECCCeEEEEecC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADD--Y-SKLAFLCADRSISLHAKY 135 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~d--g-~~Las~s~D~~I~iw~~~ 135 (702)
..+.++.+.++|.|+- +|+++.-|. .+-|+.. ....+..|....-+.-.-+++. . ..+++.+. ..-.+|+..
T Consensus 23 v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA 99 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLA 99 (1081)
T ss_pred ecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhh
Confidence 4567788999999998 666666553 4556655 3334455544433333333332 1 23344333 334467665
Q ss_pred ---CceEEEecCCCcc---ceEEecCCCc-EEEEecCCCEEEEECCCCe-EEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 136 ---GKHYSLRIPRMGR---DMAYNSWSCD-LLCAASSPELYRINLEQGR-FLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 136 ---g~~~~~~i~~~~~---~l~~~~~s~~-llv~s~d~~V~vwdl~~g~-~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
.....+-+.++++ ++.+++..++ +.+++.+..|..||+.+-. .+..+..-......|+|+-....+.+.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 2233334444444 7777888888 5677888899999998764 344444444467789998666555555677
Q ss_pred CeEEEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE--EEeeccCCCCeEEE
Q 005325 208 GAVECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI--RVKDHMFDSPIVDI 284 (702)
Q Consensus 208 G~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l--~~~~h~~~~~I~sl 284 (702)
..|.+||++-+ .++..+..+ -..|+.++|..---..+.+.+.||+|+.||....... .+... ..||+.-
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt--~~piw~~ 251 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGH------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT--NFPIWRG 251 (1081)
T ss_pred CceEEEeccCCCcceEEeccc------ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc--cCcceec
Confidence 88999999965 577778777 5788899987643456888999999999998865432 23333 5688888
Q ss_pred EEeeccCCCCCeEEEe-CCCEEEE---------EeCCC-CceeEEecCCCCceeEEEEEcCC----------CEEEEEeC
Q 005325 285 KWHQSINTERPKLITT-DNHIVRI---------WDPET-GESMTSIEPTAGKINDVCVFKDS----------GLLLLALD 343 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss-~Dg~V~I---------Wd~~t-g~~l~~i~~h~~~I~~v~~~p~~----------~~l~~a~~ 343 (702)
.|.| ...++++.-. .++.|.+ |++.+ ..++..+.+|...|..+.|-... -.|++-+.
T Consensus 252 r~~P--fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 252 RYLP--FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred cccc--cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 8887 2233333322 2333433 55544 36889999999988887775422 25888999
Q ss_pred CCcEEEEEcCC
Q 005325 344 CSQIPSYFIPD 354 (702)
Q Consensus 344 d~~I~~~~ip~ 354 (702)
|..++.|-|.+
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999998764
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.56 E-value=1.5e-05 Score=85.60 Aligned_cols=270 Identities=13% Similarity=0.081 Sum_probs=166.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCC--------------
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADR-------------- 127 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~-------------- 127 (702)
-.++.+++||.|.| |++.. .-.|.+|....... ....| . -+....+||.+.+|++-+...
T Consensus 33 ~p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~~~~-~--~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 33 WPVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVRFRH-P--DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cchhheeecCcchh-eehhh-ccceEEccccchhheeeeec-C--CceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45678999999999 55543 45689998877442 22233 2 367788999999998876543
Q ss_pred -eEEEEecCCceEEEecCC--CccceE-EecCCCc--EEEEecCCCEEEEECCCCeEE-EEeec-CCCCeEEEEEcCCC-
Q 005325 128 -SISLHAKYGKHYSLRIPR--MGRDMA-YNSWSCD--LLCAASSPELYRINLEQGRFL-SSLNT-QSPALNVVSRSKLH- 198 (702)
Q Consensus 128 -~I~iw~~~g~~~~~~i~~--~~~~l~-~~~~s~~--llv~s~d~~V~vwdl~~g~~~-~~l~~-h~~~V~~l~~sp~~- 198 (702)
.+.+||..+.......+. ....+- ...++++ +++--....++++++ ++.+. .++.. ....|....|+|.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 388898874333222221 111111 2233332 222224567888887 44332 12211 12468888899874
Q ss_pred -CEEEE-----EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-----------CCeEEE
Q 005325 199 -GLIAC-----GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-----------TGKVLI 261 (702)
Q Consensus 199 -~llas-----gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-----------DG~V~l 261 (702)
..||. +...+++++|.+-.++.+.+-... ...=..+.|++. |.+|++-.. ...+.|
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf------k~~~~qLkW~~~-g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF------KVSGVQLKWQVL-GKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE------eecccEEEEecC-CceEEEEEEEeeecccceeccceEEE
Confidence 34443 345788999998876666555444 234457889998 887764321 245788
Q ss_pred EEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 262 YDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 262 wDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
++++....-...+. .+||...+|.| ...+..+++| ....+.++|++.. +. .+-+ ...=|.+-|+|...++++
T Consensus 260 ~~~~e~~i~V~~~~--~~pVhdf~W~p--~S~~F~vi~g~~pa~~s~~~lr~N-l~-~~~P-e~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 260 LRITERSIPVEKDL--KDPVHDFTWEP--LSSRFAVISGYMPASVSVFDLRGN-LR-FYFP-EQKRNTIFFSPHERYILF 332 (561)
T ss_pred Eeecccccceeccc--cccceeeeecc--cCCceeEEecccccceeecccccc-eE-EecC-CcccccccccCcccEEEE
Confidence 88875433222343 57999999998 2244444453 6889999999854 33 3333 456677779999998888
Q ss_pred EeCC---CcEEEEEc
Q 005325 341 ALDC---SQIPSYFI 352 (702)
Q Consensus 341 a~~d---~~I~~~~i 352 (702)
++-+ +.|.+|..
T Consensus 333 agF~nl~gni~i~~~ 347 (561)
T COG5354 333 AGFDNLQGNIEIFDP 347 (561)
T ss_pred ecCCccccceEEecc
Confidence 7654 45666643
No 290
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.00034 Score=72.74 Aligned_cols=223 Identities=12% Similarity=0.156 Sum_probs=132.9
Q ss_pred cceeeeecccCCCce-eEEEECCCCCEEEEEEecCCcEEEEEcCC-ceE----EEeeecCC--------ceEEEEEEcCC
Q 005325 51 RRVELIQDLWFETAT-TKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSL----KFERHLDS--------EIINFEVLADD 116 (702)
Q Consensus 51 ~rieliqd~~~~~~v-~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~----~~~~h~~~--------~vv~~~~ls~d 116 (702)
.++.++.....++.. +.|+++++|++++++--..+.|.++-+.. .++ ....|... +-+.+.-+.|+
T Consensus 76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 467777777666666 88999999999544444468899998865 111 12222211 11344445555
Q ss_pred CCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee---cCCCCeEEEE
Q 005325 117 YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN---TQSPALNVVS 193 (702)
Q Consensus 117 g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~---~h~~~V~~l~ 193 (702)
+++|++++- .-..|++|++..|.+...-. ........|.
T Consensus 156 ~~~l~v~DL--------------------------------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 156 GRYLVVPDL--------------------------------------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred CCEEEEeec--------------------------------------CCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 555544332 11235556666665432211 2234678899
Q ss_pred EcCCCCEEEEEEc-CCeEEEEECCCC-cceeEEeccc---CCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCC-
Q 005325 194 RSKLHGLIACGGE-DGAVECFDMRMR-SSAARINAVA---PAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRS- 266 (702)
Q Consensus 194 ~sp~~~llasgs~-DG~V~iWD~~t~-~~v~~l~~~~---~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs- 266 (702)
|+|++++..+.++ +++|.+|..... ..+..+.... ..........+|.++|+ |.+|.++.. ...|.+|-+..
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d-GrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD-GRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC-CCEEEEecCCCCeEEEEEEcCC
Confidence 9999998887776 899999998863 2333333221 11223567889999999 999888643 34788887764
Q ss_pred -CeEEEEeec-cCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC--CCce
Q 005325 267 -SYPIRVKDH-MFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE--TGES 315 (702)
Q Consensus 267 -~~~l~~~~h-~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~--tg~~ 315 (702)
++...+... ..+..-....|+| ++..|+++. ++..|.||.++ ||.+
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~---~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP---SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC---CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 332221111 1233357788886 344455555 46668888775 4543
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.53 E-value=5.2e-07 Score=94.05 Aligned_cols=103 Identities=10% Similarity=0.205 Sum_probs=75.7
Q ss_pred EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCe
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPI 281 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I 281 (702)
.++...+.+|....+.+...+ + |-.-++.|+|+|| +.+|+++..|..|+|-.....-.+. ..+| ..-|
T Consensus 128 agD~~~~di~s~~~~~~~~~l-G------hvSml~dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH--~eFV 197 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEPIL-G------HVSMLLDVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGH--KEFV 197 (390)
T ss_pred cCCceeeeeecccccCcchhh-h------hhhhhheeeecCC-CCEEEEecCCceEEEEecCcccchhhhcccc--Hhhe
Confidence 334455556655543333222 2 3588999999999 9999999999999998776554444 3556 6789
Q ss_pred EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 282 VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
..|+..+ +..|+.++.|++|++||+.+|+.+.++.
T Consensus 198 S~isl~~----~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 198 STISLTD----NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeeecc----CceeeecCCCCcEEEEecccCCcccccc
Confidence 9999985 4556677789999999999999886653
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.4e-05 Score=86.31 Aligned_cols=263 Identities=13% Similarity=0.175 Sum_probs=163.7
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC-----------CeEEEEec
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD-----------RSISLHAK 134 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D-----------~~I~iw~~ 134 (702)
+-+.|||-|.| |+|-- ..-|.+|--.+....... -.+-+.++-+||+.++|++-+.. ..|.|||+
T Consensus 214 tyv~wSP~GTY-L~t~H-k~GI~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTY-LVTFH-KQGIALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceE-EEEEe-ccceeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 67899999999 66654 455788976663221111 12337899999999999987652 57899999
Q ss_pred C-CceE-EEecCCCcc-ceEEecCCCc--EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC--
Q 005325 135 Y-GKHY-SLRIPRMGR-DMAYNSWSCD--LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED-- 207 (702)
Q Consensus 135 ~-g~~~-~~~i~~~~~-~l~~~~~s~~--llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D-- 207 (702)
. |... .+.++.... ..-+..|+.+ .++.-..+.|.+++...-.++-.-...-+.|....|+|.+++||-=+..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 8 4322 233322222 2223344444 5555555788888877644433223344678899999998888764431
Q ss_pred ---CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCCe-EEEEe
Q 005325 208 ---GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS----------STGKVLIYDLRSSY-PIRVK 273 (702)
Q Consensus 208 ---G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs----------~DG~V~lwDlrs~~-~l~~~ 273 (702)
..+.+-.+-+++.+.+-+.+ +-.=..|-|-.+ |.+|++-. .=..+-|+.++... |+...
T Consensus 370 ~~parvtL~evPs~~~iRt~nlf------nVsDckLhWQk~-gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLF------NVSDCKLHWQKS-GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred CCcceEEEEecCccceeeeccce------eeeccEEEeccC-CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 34666666666666665555 222234566666 88887532 11235666666543 55444
Q ss_pred eccCCCCeEEEEEeeccCCCCCeEEEeC--CCEEEEEeCCC-C---ceeEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 274 DHMFDSPIVDIKWHQSINTERPKLITTD--NHIVRIWDPET-G---ESMTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~t-g---~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
.. ..+|...+|-| ..+...++++. ..+|.+|.+.+ . .++..+. ....|.+-|+|.|+++++++-.+
T Consensus 443 el--ke~vi~FaWEP--~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 443 EL--KESVIAFAWEP--HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ec--chheeeeeecc--CCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecc
Confidence 44 56899999999 22333444553 67899998873 2 2233332 35788999999999988876543
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.51 E-value=1.5e-05 Score=79.16 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=122.6
Q ss_pred EEEEecCCcEEEEEcCC---ceEEEeeecCC-ceEE-EEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCC---ccc
Q 005325 78 IVSGIYPPQVKVYELRQ---LSLKFERHLDS-EIIN-FEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRM---GRD 149 (702)
Q Consensus 78 latGs~dg~I~vwdl~~---~~~~~~~h~~~-~vv~-~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~---~~~ 149 (702)
||.|+..|+..+|.+.+ .......+... +++. .+.+ ...+..++.|.++++.++.+.......... ...
T Consensus 87 la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred EEeccccceeeeecccCcccceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 79999999999999986 22222222221 1111 1111 144667888999999988754433322222 236
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCC--eEEEE-eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-ceeEEe
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQG--RFLSS-LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS-SAARIN 225 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g--~~~~~-l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~-~v~~l~ 225 (702)
+.+.+...-+.+++....|.+|.+... ..+.. ....++.-.+..|+.....+|+++.||++.|||+|... +.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 666666666888888899999876543 23332 22233455688899999999999999999999999643 332222
Q ss_pred cccCCCCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCCCeE
Q 005325 226 AVAPAGDADQEVTALEFDSNGGF--LMGVGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~--~LasGs~DG~V~lwDlrs~~~ 269 (702)
.. -..|.+.|..+.|+|- |. +|+..-.=+.+.|.|+|+..-
T Consensus 244 st--rp~hnGa~R~c~Fsl~-g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 244 ST--RPHHNGAFRVCRFSLY-GLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cc--CCCCCCceEEEEecCC-CcceEEEEecCcceEEEEEcccCce
Confidence 22 2347899999999986 43 344545567899999999764
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=0.00011 Score=82.30 Aligned_cols=315 Identities=15% Similarity=0.200 Sum_probs=198.7
Q ss_pred CcceEEEEecCC-cEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEE---CCCCCEEEEEEe
Q 005325 7 EGNAMKSTLING-VKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRE---TPDGEFLIVSGI 82 (702)
Q Consensus 7 ~~~~l~~s~~~~-Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~---SpDG~~llatGs 82 (702)
.+++|.+...++ |-||++..+ +.--|+.. +..++..++| -++.+++|++-.
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~--s~~~~l~~-----------------------~~~~~qdl~W~~~rd~Srd~LlaIh 132 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLA--SVINWLSH-----------------------SNDSVQDLCWVPARDDSRDVLLAIH 132 (1062)
T ss_pred cceeEEeccccCcEEEEEehhh--hhhhhhcC-----------------------CCcchhheeeeeccCcchheeEEec
Confidence 455565554444 788888776 33344431 2233444554 345556677777
Q ss_pred cCCcEEEEEcCCceEEEeeecCCceEEEEEE-cCCCCEEEEEECCCeEEEEecC--------CceEEEecCC--------
Q 005325 83 YPPQVKVYELRQLSLKFERHLDSEIINFEVL-ADDYSKLAFLCADRSISLHAKY--------GKHYSLRIPR-------- 145 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~l-s~dg~~Las~s~D~~I~iw~~~--------g~~~~~~i~~-------- 145 (702)
....|.+|+..+...-+......++..+..+ +-|.+.+...+..|.|.+-+.- |....+..+.
T Consensus 133 ~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 133 GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 7889999998886654444434444443333 3355667667777766665332 2222222111
Q ss_pred -------------------CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC--CEEEEE
Q 005325 146 -------------------MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH--GLIACG 204 (702)
Q Consensus 146 -------------------~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~--~llasg 204 (702)
....++|+|.-.+++......+++++|++-..++.......+.+.-+.|-|+. ..|+++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl 292 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL 292 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE
Confidence 11134556666667788888999999999988888877777777788888877 688899
Q ss_pred EcCCeEEEEECCC----------------CcceeEEec------------cc-CC-------------------------
Q 005325 205 GEDGAVECFDMRM----------------RSSAARINA------------VA-PA------------------------- 230 (702)
Q Consensus 205 s~DG~V~iWD~~t----------------~~~v~~l~~------------~~-~~------------------------- 230 (702)
..||.+.||-.+. +..+..+.. +. +.
T Consensus 293 H~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~ 372 (1062)
T KOG1912|consen 293 HSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDY 372 (1062)
T ss_pred ecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccc
Confidence 9999999996553 111111111 00 00
Q ss_pred -------------------------------CCCCCCeEEEEEcCC----------CCC-------EEEEEeCCCeEEEE
Q 005325 231 -------------------------------GDADQEVTALEFDSN----------GGF-------LMGVGSSTGKVLIY 262 (702)
Q Consensus 231 -------------------------------~~~~~~Vtslafspd----------~g~-------~LasGs~DG~V~lw 262 (702)
..|....++...+|- +|+ ++|+|+..|+|.++
T Consensus 373 ~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vv 452 (1062)
T KOG1912|consen 373 RSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVV 452 (1062)
T ss_pred ccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEE
Confidence 223444444444331 122 57899999999999
Q ss_pred EcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-C---------CCEEEEEeCCCCce--eEEe-cCCCCceeE
Q 005325 263 DLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-D---------NHIVRIWDPETGES--MTSI-EPTAGKIND 328 (702)
Q Consensus 263 Dlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~---------Dg~V~IWd~~tg~~--l~~i-~~h~~~I~~ 328 (702)
|+.++.... +..| ...|.++.|.- ...++.-+ + -+.+.|-|+++|-. +..+ .+...+|..
T Consensus 453 dvst~~v~~~fsvh--t~~VkgleW~g----~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 453 DVSTNAVAASFSVH--TSLVKGLEWLG----NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred Eecchhhhhhhccc--ccceeeeeecc----ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 999887655 5566 67899999973 33444422 1 24577888888753 3322 234569999
Q ss_pred EEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 329 VCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 329 v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
+..+..+.++++.-.+..+-+|.+
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred eeecccCceEEEEecccchHHHhh
Confidence 999999999999999988888876
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-06 Score=91.23 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=79.7
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC
Q 005325 168 LYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG 246 (702)
Q Consensus 168 V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~ 246 (702)
|..++..+.+...-+..|...|..++|+|..+ ++..++.+.+|.|.|+++...+..+..+ ..+.+++|+-+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------~~~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------NQIWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-------CCceeeeeccCC
Confidence 55555555555555667888999999999885 8999999999999999999999998888 899999999987
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 005325 247 GFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 247 g~~LasGs~DG~V~lwDlrs~ 267 (702)
.++|.+|...|.|.|||+|..
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cceeEEeccCceEEEEEccCC
Confidence 788999999999999999964
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.48 E-value=0.00011 Score=74.23 Aligned_cols=228 Identities=14% Similarity=0.123 Sum_probs=134.1
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCC----ceEEEecCCCc----cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee
Q 005325 112 VLADDYSKLAFLCADRSISLHAKYG----KHYSLRIPRMG----RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 112 ~ls~dg~~Las~s~D~~I~iw~~~g----~~~~~~i~~~~----~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
.+++||+.||.. .|..|.|-.... ...+..+|+.. +-+++.+.+.-|+.+.+.|+|+++|+....+ ..+.
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~ 81 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIP 81 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcC
Confidence 466777766655 467788875442 22334455433 3778877777788888999999999875332 2222
Q ss_pred c-------CCCCeEEEEEcCCC------CEEEEEEcCCeEEEEECCCC-----cceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 184 T-------QSPALNVVSRSKLH------GLIACGGEDGAVECFDMRMR-----SSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 184 ~-------h~~~V~~l~~sp~~------~llasgs~DG~V~iWD~~t~-----~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
. -...|..+.|.+.. ..|++-...|.++-|-+..+ +..+++... ..+...|+++.|+|.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~---~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS---SHYPHGINSAVYHPK 158 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec---ccCCCceeEEEEcCC
Confidence 1 12356666665433 24555566788877765322 233333332 123579999999999
Q ss_pred CCCEEEEEeCC-Ce----------EEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc
Q 005325 246 GGFLMGVGSST-GK----------VLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 246 ~g~~LasGs~D-G~----------V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
.++|++|+.. .. +..|-+-++.|. ...... .+..+-... .+..+|.+-+.+
T Consensus 159 -h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-----------yk~v~~----~~~~~~~~~--~~~~~~~~~~~~ 220 (282)
T PF15492_consen 159 -HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-----------YKQVTS----SEDDITASS--KRRGLLRIPSFK 220 (282)
T ss_pred -CCEEEEeccCCCCCccccccccCceEEEEcCCCCc-----------EEEccc----cCccccccc--cccceeecccee
Confidence 6666666542 21 222222222211 111111 011111111 122345544444
Q ss_pred eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCcc
Q 005325 315 SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKWC 362 (702)
Q Consensus 315 ~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wc 362 (702)
...........|..|..+|++.+|++...+|.|.+|.+|+|.....|.
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 433323336689999999999999999999999999999999888884
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=1.3e-05 Score=88.67 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=152.3
Q ss_pred eeccc-CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 56 IQDLW-FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 56 iqd~~-~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
=|.++ |..+|..+.|+...+. |.|...+|.|.||-+...+. .+...-+..++....+..||++++..-.||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 34454 8899999999999998 88889999999999877332 12222234456666677799999999999999887
Q ss_pred ecCCceEE-EecCCCc-cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe------------ecCCCCeEEEEEc---
Q 005325 133 AKYGKHYS-LRIPRMG-RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL------------NTQSPALNVVSRS--- 195 (702)
Q Consensus 133 ~~~g~~~~-~~i~~~~-~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l------------~~h~~~V~~l~~s--- 195 (702)
.+.|...- ..+.... ..+.+.+.+..++.+-..|+++++|.+.. +...+ ......|..+.|+
T Consensus 143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 76653221 1111111 14455555555777778899999986432 21111 1111235566665
Q ss_pred -----CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC---------eEEE
Q 005325 196 -----KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG---------KVLI 261 (702)
Q Consensus 196 -----p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG---------~V~l 261 (702)
|+...|+++-.+|.+.|-.-.+......+... -.|..+.|+++ |..||+++.+. .|.+
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-------m~~vgakWnh~-G~vLAvcG~~~da~~~~d~n~v~F 293 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-------MKIVGAKWNHN-GAVLAVCGNDSDADEPTDSNKVHF 293 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-------cEeecceecCC-CcEEEEccCcccccCccccceEEE
Confidence 46689999999999988765554444444444 67899999999 99999887653 3444
Q ss_pred EEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 262 YDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 262 wDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
|..- |..+. ++.. +..|++++|-. .+.-++-+-|+.|.+=++
T Consensus 294 ysp~-G~i~gtlkvp--g~~It~lsWEg----~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 294 YSPY-GHIVGTLKVP--GSCITGLSWEG----TGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred eccc-hhheEEEecC--CceeeeeEEcC----CceEEEEEecceEEEEee
Confidence 4321 22222 2322 67899999973 444444445566655444
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=0.00025 Score=73.62 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=148.0
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCc-EEEEEcCCceEEEe--eecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQ-VKVYELRQLSLKFE--RHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~-I~vwdl~~~~~~~~--~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|.....++++|+...+++.+-..|+ ..+||..+...... ...+-...--.+||+||.+|++.-.|-
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~---------- 72 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY---------- 72 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc----------
Confidence 56777889999977777888888875 66789887433221 111111122346888888887765541
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECC-CCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-----------
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLE-QGRFLSSLNTQSPALNVVSRSKLHGLIACGG----------- 205 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~-~g~~~~~l~~h~~~V~~l~~sp~~~llasgs----------- 205 (702)
....|-|-+||.. +-+.+..|..|.-....|.+.|++..|+++.
T Consensus 73 ------------------------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 73 ------------------------ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred ------------------------CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 1223446667776 5566667777666666777888886666542
Q ss_pred -------cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe-------EEEEEcCCCeEEE
Q 005325 206 -------EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK-------VLIYDLRSSYPIR 271 (702)
Q Consensus 206 -------~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~-------V~lwDlrs~~~l~ 271 (702)
.+-++.+.|..+++.+...... ...|..+|..|+++++ |..++..-..|. |.+++ .+.++.
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~ 203 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHR--RGGALR 203 (305)
T ss_pred eecChhhcCCceEEEecCCCceeeeeecC--ccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEc--CCCcce
Confidence 2345666777788777765442 1134688999999999 776665544332 33333 333222
Q ss_pred Eee------ccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 272 VKD------HMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 272 ~~~------h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
... ......|-+|++++ ++..++++| -.+.+.+||..+|..+..... ..+..++..+++ ++++ +..
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~---~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~s-sG~ 276 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADR---DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVS-SGQ 276 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeC---CCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEe-CCC
Confidence 111 11235689999996 344555666 589999999999999876554 345556555555 4444 344
Q ss_pred Cc
Q 005325 345 SQ 346 (702)
Q Consensus 345 ~~ 346 (702)
+.
T Consensus 277 G~ 278 (305)
T PF07433_consen 277 GQ 278 (305)
T ss_pred cc
Confidence 44
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.44 E-value=0.0004 Score=74.12 Aligned_cols=224 Identities=11% Similarity=0.091 Sum_probs=142.1
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCC-CCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEEC-CCCCEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQ-RSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRET-PDGEFLIV 79 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~-~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~S-pDG~~lla 79 (702)
|+.||+ .+..+..++|.+|+-.... ..|--=+.--++..+ +.+-.-.+.+.+ |+ .+|.+ +|
T Consensus 274 ~nsDGk--rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~---~k~~~pskyled-----------fa~~~Gd~-ia 336 (668)
T COG4946 274 ANSDGK--RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQ---PKFVNPSKYLED-----------FAVVNGDY-IA 336 (668)
T ss_pred cCCCCc--EEEEecCCcEEEeCCCcCcceeeecCCcccccccc---ccccCHHHhhhh-----------hccCCCcE-EE
Confidence 578999 5778888999999887650 011000000000000 000000111111 22 25677 45
Q ss_pred EEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCC-eEEEEecCCceEEEecCCCcc--ceEEecCC
Q 005325 80 SGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADR-SISLHAKYGKHYSLRIPRMGR--DMAYNSWS 156 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~-~I~iw~~~g~~~~~~i~~~~~--~l~~~~~s 156 (702)
.-+ -|+..|.+.........++... +...-+..+...++.+..|+ .|-|++..+.......+..+. .+...+..
T Consensus 337 ~VS-RGkaFi~~~~~~~~iqv~~~~~--VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 337 LVS-RGKAFIMRPWDGYSIQVGKKGG--VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred EEe-cCcEEEECCCCCeeEEcCCCCc--eEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC
Confidence 544 3666666655433333334233 55666666778899999999 899999987665555555555 66666666
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC----eEEEEECCCCcceeEEecccCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG----AVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG----~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
..++++....+|+++|+++|.....-+...+-|+.++|+|++.+||-+--+| .|+++|+.+++........
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t----- 488 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT----- 488 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-----
Confidence 6688888888999999999987655555667899999999999999877665 5899999987754443332
Q ss_pred CCCCeEEEEEcCCCCCEEEEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasG 253 (702)
..=.+-+|.|+ +.+|.--
T Consensus 489 --a~DfsPaFD~d-~ryLYfL 506 (668)
T COG4946 489 --AYDFSPAFDPD-GRYLYFL 506 (668)
T ss_pred --ccccCcccCCC-CcEEEEE
Confidence 44456788898 8876643
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.42 E-value=0.00021 Score=72.50 Aligned_cols=186 Identities=17% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEE-ec-C--CC
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSL-RI-P--RM 146 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~-~i-~--~~ 146 (702)
+++.+ +++++.++.|.+||..+....+.......+...... ++..+++++.++.|..++.. |...-. .. . ..
T Consensus 34 ~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 34 PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccc
Confidence 35666 455589999999999886665555443332222222 23667777788888888855 543322 11 1 11
Q ss_pred c--cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCC----------eEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 147 G--RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPA----------LNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 147 ~--~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~----------V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
. ...........++++..++.|+.+|+.+|+.+..+..+... +.+-.+..++ .++.++.++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1 12222223455777777999999999999998888765432 1222223334 667777777544449
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
+.+++.+.... . ..+..+ ..+. +..|++++.++.|.+||+++++.++
T Consensus 190 ~~tg~~~w~~~-~-------~~~~~~-~~~~-~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEKLWSKP-I-------SGIYSL-PSVD-GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEEEEEEC-S-------S-ECEC-EECC-CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEec-C-------CCccCC-ceee-CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 99998665433 2 223332 3345 6788888899999999999999875
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.41 E-value=1.5e-06 Score=85.81 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=95.7
Q ss_pred CCCcEEEEecCCCEEEEECCCCeE-EEEeecCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEECCCCcceeEEeccc
Q 005325 155 WSCDLLCAASSPELYRINLEQGRF-LSSLNTQSPALNVVSRSKLHGLIACGGE-----DGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~-~~~l~~h~~~V~~l~~sp~~~llasgs~-----DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
....++++..++.+.+++.+.-.. ...+........+.++...++++.++.- -+..++|+++-.+ ++....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccc---cccccc
Confidence 344578888888888887654111 1111111111222333334455555432 1344566665322 222211
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE-EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEE
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP-IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVR 306 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~-l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~ 306 (702)
.....|++++-+|.....+++|+.||.|.|||.|+... .. ++.| ..+|+.+.||| .+..+|++++.||.+.
T Consensus 177 ---~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah--k~~i~eV~FHp--k~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 177 ---KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH--KAEIWEVHFHP--KNPEHLFTCSEDGSLW 249 (319)
T ss_pred ---cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh--hhhhhheeccC--CCchheeEecCCCcEE
Confidence 01245999999998677888999999999999998753 32 5677 78999999999 6688999999999999
Q ss_pred EEeCCC
Q 005325 307 IWDPET 312 (702)
Q Consensus 307 IWd~~t 312 (702)
.||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999874
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=5.8e-06 Score=92.22 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=118.4
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC-----------CCEEEEEeC
Q 005325 187 PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG-----------GFLMGVGSS 255 (702)
Q Consensus 187 ~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~-----------g~~LasGs~ 255 (702)
+.-+++.|+|.| +||.|+. ..|.+-|.++-+.++++..| ...|+.+.|.|-. ...||++..
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h------~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELH------QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccC------ccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 346788999876 8888886 68999999999999999998 7999999998731 236788888
Q ss_pred CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE-EEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc-
Q 005325 256 TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL-ITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK- 333 (702)
Q Consensus 256 DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll-~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p- 333 (702)
.|.|.|||...+..+....|. ..+|..++|.|...+...++ +-....+|.+|+..+|+.+...........|+.+.|
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence 999999999988766644442 68999999998654443444 445788999999999999888777455666688878
Q ss_pred CCCEEEEEeCCCcEEEE
Q 005325 334 DSGLLLLALDCSQIPSY 350 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~ 350 (702)
+...+.+-+..|.+.+.
T Consensus 167 d~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred CcceEEEEccCceEEEE
Confidence 55555555555555443
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.38 E-value=0.00012 Score=80.80 Aligned_cols=264 Identities=14% Similarity=0.095 Sum_probs=154.3
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCc-----------eEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EE
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSE-----------IINFEVLADDYSKLAFLCADRSISLHAKY-GKH-YS 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~-----------vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~ 140 (702)
+.. +++++.++.|..+|..+....+....... +...... ++..++.++.++.+.-+|.. |.. ..
T Consensus 69 ~~~-vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNK-VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCE-EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 445 56667788999999887555444332210 0000111 23567777788888888865 432 22
Q ss_pred EecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEE-EEEcC--CCCEEEEEEcCCeEEEEECC
Q 005325 141 LRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNV-VSRSK--LHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 141 ~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~-l~~sp--~~~llasgs~DG~V~iWD~~ 216 (702)
...+.... .... ....+++++.++.|+.+|..+|+.+..+......+.. ...+| .+..++.++.+|.|..+|..
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 32222211 1111 1344777888889999999999998877543211100 00111 13467778889999999999
Q ss_pred CCcceeEEecccCCCCCC-CCeEEEEEcC--CCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCC
Q 005325 217 MRSSAARINAVAPAGDAD-QEVTALEFDS--NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~-~~Vtslafsp--d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
+++.+...........+. .....+..+| . +..+++++.+|.+..+|+.+++.++.... +.+ ..+... +
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~-~~~~~~-----~ 294 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWKREY--GSV-NDFAVD-----G 294 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCc-cCcEEE-----C
Confidence 998776654331100000 0011111122 2 34677778899999999999988775433 221 223333 6
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecCCCC-ceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEPTAG-KINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~-~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+.+++++.++.|..+|..+|+.+.....-.. ...+... .++.|++++.++.++++...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 7788888899999999999988765432111 1122212 35678888888888776543
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00025 Score=78.67 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=116.4
Q ss_pred ceEEecCCCc-EEEEecC---CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcC--CeEEEEECCCCcce
Q 005325 149 DMAYNSWSCD-LLCAASS---PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GED--GAVECFDMRMRSSA 221 (702)
Q Consensus 149 ~l~~~~~s~~-llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~D--G~V~iWD~~t~~~v 221 (702)
...+.+.... ++..+.. ..|+++|+.+++..... ...+.+.+..|+|++..|+.. +.+ ..|.++|+.++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4556666654 4444433 46999999998764433 344456678899999765543 333 5688888877653
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG--KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG--~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
..+... ........|+|| |..|+..+. .| .|.++|+.++....+... +.. ...|+| ++..++.
T Consensus 270 ~~LT~~------~~~d~~p~~SPD-G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~~--~~~~SP---DG~~Ia~ 335 (419)
T PRK04043 270 TQITNY------PGIDVNGNFVED-DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GKN--NSSVST---YKNYIVY 335 (419)
T ss_pred EEcccC------CCccCccEECCC-CCEEEEEECCCCCceEEEEECCCCCeEeCccC--CCc--CceECC---CCCEEEE
Confidence 334333 123345689999 887776553 23 688889988776553322 111 248998 5666666
Q ss_pred EeCC---------CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC-CcEEEEEcCC
Q 005325 299 TTDN---------HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC-SQIPSYFIPD 354 (702)
Q Consensus 299 ss~D---------g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d-~~I~~~~ip~ 354 (702)
++.. ..|.+.|+.++.. ..+.. ........|+|++.+|+.+... +.-.++.++.
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTA-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECCC-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 6532 3688889887764 44544 2333468899999977666543 4444554443
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=2.7e-06 Score=91.21 Aligned_cols=273 Identities=12% Similarity=0.199 Sum_probs=171.0
Q ss_pred ecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---------ceEEEeeecCCceEEEEEEcCCCCEEEEEECC
Q 005325 57 QDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---------LSLKFERHLDSEIINFEVLADDYSKLAFLCAD 126 (702)
Q Consensus 57 qd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D 126 (702)
+.| .|...|..|+--.+.+- +++++.|.+|++|.+.. ...++..|. .++.++-++. +-+++ ++.|
T Consensus 729 ~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-k~i~~igfL~-~lr~i--~ScD 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-KPIHDIGFLA-DLRSI--ASCD 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhcc-Ccccceeeee-cccee--eecc
Confidence 444 46677777654444444 68999999999999865 233556663 3455555554 33455 4568
Q ss_pred CeEEEEecC-CceEE--EecCCCcc--ceEEecC-CCcEEEE--ecCCCEEEEECCCCeEEEEeecC-----CCCeEEEE
Q 005325 127 RSISLHAKY-GKHYS--LRIPRMGR--DMAYNSW-SCDLLCA--ASSPELYRINLEQGRFLSSLNTQ-----SPALNVVS 193 (702)
Q Consensus 127 ~~I~iw~~~-g~~~~--~~i~~~~~--~l~~~~~-s~~llv~--s~d~~V~vwdl~~g~~~~~l~~h-----~~~V~~l~ 193 (702)
+.|.+|++. |.... ...|+.+. .+.+.+. ...++++ +...+|.++|...+.....++.. ..-+.|++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999987 44332 22344333 5555554 3334443 45678999999998887776543 34688999
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE-EEcCCCeEEE-
Q 005325 194 RSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI-YDLRSSYPIR- 271 (702)
Q Consensus 194 ~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l-wDlrs~~~l~- 271 (702)
+.|.|+.++.|-.+|.|.+.|.|++..+.....- ......++- |. ...|+....|.++.| |-.-.+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpm------ecdllqlaa-ps-dq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPM------ECDLLQLAA-PS-DQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcc------cchhhhhcC-ch-hHHHHhhcccceeEeeehhcCCeeeec
Confidence 9999999999999999999999999988766554 223333332 33 466777777888888 7654444322
Q ss_pred EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC----CceeEEecC--CCCceeEEEEEcCCCEEEEEeCCC
Q 005325 272 VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET----GESMTSIEP--TAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 272 ~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t----g~~l~~i~~--h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
.+.. ..| ..|.. +-+..+++....+.+.||--.. -..++.+.+ ..+..++++..|-+.-++.+++.|
T Consensus 956 ~kpp--pep---ahflq--svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 956 DKPP--PEP---AHFLQ--SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred cCCC--Ccc---hhhhh--ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 1211 122 22222 1144566666677777875321 112233332 245777888888777777788877
Q ss_pred cEEE
Q 005325 346 QIPS 349 (702)
Q Consensus 346 ~I~~ 349 (702)
.|..
T Consensus 1029 ~IaL 1032 (1034)
T KOG4190|consen 1029 AIAL 1032 (1034)
T ss_pred ceee
Confidence 7654
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.36 E-value=0.00028 Score=85.29 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=158.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEE----EcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cc
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVY----ELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GK 137 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vw----dl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~ 137 (702)
..|.++.+-+|..- ++.+..+|.|.++ +.........+..+..| .++.+|||...|+.+..+++|.+.+.. ..
T Consensus 76 ~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI-~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 76 DKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEIVGSVDSGI-LAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEEEEEEcCcE-EEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 67888999999887 6777889999999 66666666666666544 555588999999999999988876543 22
Q ss_pred eEEEecCC--Ccc-ceEEecCCCc--EEEEecCCCEE--EEECCCC-eEEEEeecCCCCeEEEEEcCCCCEEEEEEc---
Q 005325 138 HYSLRIPR--MGR-DMAYNSWSCD--LLCAASSPELY--RINLEQG-RFLSSLNTQSPALNVVSRSKLHGLIACGGE--- 206 (702)
Q Consensus 138 ~~~~~i~~--~~~-~l~~~~~s~~--llv~s~d~~V~--vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~~llasgs~--- 206 (702)
.....+.. ++. ......|+.. -+=|+...... .-+.... .-...+. +.+.-..|+|-.||.+||+.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 22221111 110 1111111111 01011100000 0000000 0001122 3345668999999999999875
Q ss_pred C---CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCCeE---EEEeeccC
Q 005325 207 D---GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS---TGKVLIYDLRSSYP---IRVKDHMF 277 (702)
Q Consensus 207 D---G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---DG~V~lwDlrs~~~---l~~~~h~~ 277 (702)
. ..|+||+-. |....+-... .+--.+++|.|. |.+||+... .-.|.+|. |+|-. ..+.....
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v------~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPV------DGLEGALSWRPS-GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccC------CCccCCccCCCC-CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 3 478999865 4432222211 244468999999 999998764 34566666 33321 11221112
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc--eeEEecCC-CCceeEEEEEcCCC-EEEEEeCCCcEEEEE
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE--SMTSIEPT-AGKINDVCVFKDSG-LLLLALDCSQIPSYF 351 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~--~l~~i~~h-~~~I~~v~~~p~~~-~l~~a~~d~~I~~~~ 351 (702)
...|..|.|++ ++.+|+..-...|.+|-..+.. +-+.+... ...+..+.|+|... .|.+.+.++.+..|.
T Consensus 304 ~~~v~~l~Wn~----ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 304 EEKVIELAWNS----DSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CceeeEEEECC----CCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 56899999996 6666665544449999998754 22333321 34556699999554 466666667665543
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.9e-06 Score=61.30 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=36.8
Q ss_pred CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 176 GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 176 g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
|+++.++.+|...|++|+|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=8.6e-06 Score=92.52 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=113.3
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---------CCeEEEEECCCCcc
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---------DGAVECFDMRMRSS 220 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---------DG~V~iWD~~t~~~ 220 (702)
......+..+++|...|+|.+-|+.+.+.++++..|++.|..+.+ .|++|++|+. |..|++||+|.-+.
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 333444566888899999999999999999999999999987765 5889999875 56689999998887
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEE--EEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPI--RVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~l--~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
+.-+..+ ....-+.|+|.=...+++.+..|...+.|..+ +.|. ...-+..+..|.++++++ ++..++
T Consensus 259 l~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs---n~~ala 328 (1118)
T KOG1275|consen 259 LSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS---NGDALA 328 (1118)
T ss_pred cCCcccc-------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC---CCceEE
Confidence 7766666 33467889987567899999999999999433 2231 133344466699999996 444444
Q ss_pred EEeCCCEEEEEeC
Q 005325 298 ITTDNHIVRIWDP 310 (702)
Q Consensus 298 ~ss~Dg~V~IWd~ 310 (702)
.+-.+|.|.+|--
T Consensus 329 fgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 329 FGDHEGHVNLWAD 341 (1118)
T ss_pred EecccCcEeeecC
Confidence 5556999999983
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=5.7e-05 Score=85.78 Aligned_cols=195 Identities=10% Similarity=0.116 Sum_probs=124.3
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCC-eEEEEEcCCCCEEEEEEcCC-----eEEEEECCCC------cceeEE
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPA-LNVVSRSKLHGLIACGGEDG-----AVECFDMRMR------SSAARI 224 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~-V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~------~~v~~l 224 (702)
..+++++.+|.|.++|- .-+.+..|+.+... |..+-.....++|++.+.|+ .|+|||+... .++..+
T Consensus 36 ~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred ceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 33666677777766653 23444667776666 55555555557888877764 4899998732 233212
Q ss_pred eccc-CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC--CCe-EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 225 NAVA-PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR--SSY-PIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 225 ~~~~-~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr--s~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
.... ..+....++++|+.+.+ -..+|+|-.+|.|.++.=. ..+ .-....|....||+.+++.. ++..++..+
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~---d~~s~lFv~ 190 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS---DGKSVLFVA 190 (933)
T ss_pred eeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec---CCceeEEEE
Confidence 2211 11234678999999998 8999999999999998421 111 11134455578999999984 444434444
Q ss_pred CCCEEEEEeCCCCce-eEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 301 DNHIVRIWDPETGES-MTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 301 ~Dg~V~IWd~~tg~~-l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
.-..|.+|.+....+ +..+..|..+++|..+++..+.+++|+. .-+..|..+..|+
T Consensus 191 Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 191 TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP 247 (933)
T ss_pred ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence 456789999883332 5557778889999999998775554443 3455555555444
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.9e-05 Score=89.03 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=98.9
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCC-CeE
Q 005325 195 SKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN----GGFLMGVGSSTGKVLIYDLRS-SYP 269 (702)
Q Consensus 195 sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd----~g~~LasGs~DG~V~lwDlrs-~~~ 269 (702)
.-.|.+++||+.||+|.|..+-+.+...++..+ .++.+|+++|+ ....+++|+.-| +.++.-+- +..
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 557899999999999999999999988888887 79999999997 356799999999 77776431 111
Q ss_pred EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCce------eEEEEEcCCCEEE
Q 005325 270 IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKI------NDVCVFKDSGLLL 339 (702)
Q Consensus 270 l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I------~~v~~~p~~~~l~ 339 (702)
..+..|...++|.+|.|. +.+++-++|--|+|||+.+++.++.+++....+ ..++|.++..+++
T Consensus 152 ~~v~l~~~eG~I~~i~W~------g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 152 DSVVLSEGEGPIHSIKWR------GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred cceeeecCccceEEEEec------CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 112334447899999997 456666655569999999999999987744333 3577777665443
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00019 Score=81.76 Aligned_cols=220 Identities=16% Similarity=0.161 Sum_probs=137.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECCC-----eEEEEecCCc
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCADR-----SISLHAKYGK 137 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~-----~I~iw~~~g~ 137 (702)
.++| |++.+.. +|.|+.+|.|.+++-.-.. ..|..+..+ ++.+++.-..-..|++.+.|. .|+||+....
T Consensus 27 ~isc--~~s~~~~-vvigt~~G~V~~Ln~s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGS-VVIGTADGRVVILNSSFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCce-EEEeeccccEEEecccceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 5677776 8999999999888765433 455555444 677777766657888877765 3667765421
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC-
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR- 216 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~- 216 (702)
.... -|. ++ +...++- ..+.....++.+++++.+-..+|+|-.+|.|.++.-.
T Consensus 103 ~~n~-sP~---c~---------------~~~ri~~-------~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 103 DKNN-SPQ---CL---------------YEHRIFT-------IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred CCCC-Ccc---ee---------------eeeeeec-------cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 1000 000 00 0000000 0112235578899999999999999999999999543
Q ss_pred --CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 217 --MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 217 --t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
.+..-..+... ...+||.+++..+ +..++-......|.+|.+....|.. +.++ +|.++.|..|++ .
T Consensus 157 ~RDrgsr~~~~~~-----~~~pITgL~~~~d-~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~-~G~~lnCss~~~----~ 225 (933)
T KOG2114|consen 157 LRDRGSRQDYSHR-----GKEPITGLALRSD-GKSVLFVATTEQVMLYSLSGRTPSLKVLDN-NGISLNCSSFSD----G 225 (933)
T ss_pred hhccccceeeecc-----CCCCceeeEEecC-CceeEEEEecceeEEEEecCCCcceeeecc-CCccceeeecCC----C
Confidence 11111112211 2589999999988 7663434455689999998544444 3444 488999999996 4
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEec-CCCC
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIE-PTAG 324 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~-~h~~ 324 (702)
..-++++.+..|.+|+...-.+...+. +|..
T Consensus 226 t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 226 TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CccEEEecCceEEEEcCCCcceeeeecCCCeE
Confidence 443445555679999998766666666 5443
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.0012 Score=71.87 Aligned_cols=261 Identities=15% Similarity=0.162 Sum_probs=139.7
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE---EEee-------ecC-------CceEEEEEEcCCCCEEEEEE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL---KFER-------HLD-------SEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~---~~~~-------h~~-------~~vv~~~~ls~dg~~Las~s 124 (702)
...+....|||||++|+.+ .++.|.++++..... +..+ ..+ -......++|||+++||+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v--~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV--RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE--ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEE--ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4567889999999994444 467899998765221 2211 000 11235788999999998887
Q ss_pred CC-CeEEEEec---C--C----ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE--Ee---ecCCCCe
Q 005325 125 AD-RSISLHAK---Y--G----KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS--SL---NTQSPAL 189 (702)
Q Consensus 125 ~D-~~I~iw~~---~--g----~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~--~l---~~h~~~V 189 (702)
.| +.|..+.. . + ....++.|..+... ..-.+.++|+.+++... .. ......+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n-------------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl 186 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN-------------PRVSLFVVDLASGKTTELDPPNSLNPQDYYL 186 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS----------------EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcC-------------CceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence 64 33433311 1 1 23334444433211 01136678888876532 11 1234468
Q ss_pred EEEEEcCCCC-EEEEEEc-C---CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc-CCCCCEEEEEeCCCe--EEE
Q 005325 190 NVVSRSKLHG-LIACGGE-D---GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD-SNGGFLMGVGSSTGK--VLI 261 (702)
Q Consensus 190 ~~l~~sp~~~-llasgs~-D---G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs-pd~g~~LasGs~DG~--V~l 261 (702)
..+.|.+++. +++.-.. + -.+.++|+.++.+...+..... .--..-..+.|. +++..+|.....+|. |.+
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~--~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD--GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS--SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC--cceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 8999999987 4333322 2 3467778877655433333210 001122355554 663556666667775 555
Q ss_pred EEcCCCeEEEEeeccCCCCeEE-EEEeeccCCCCCeEEEeC-----CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 262 YDLRSSYPIRVKDHMFDSPIVD-IKWHQSINTERPKLITTD-----NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 262 wDlrs~~~l~~~~h~~~~~I~s-l~fsp~~~~~~~ll~ss~-----Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
++...+.+..+... ...|+. +.|.+ .++.+...+. ...|..-++.++..+..+......-..+.|+|++
T Consensus 265 ~~~~~~~~~~lT~G--~~~V~~i~~~d~---~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 265 YDLDGGKPRQLTSG--DWEVTSILGWDE---DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EETTSSEEEESS-S--SS-EEEEEEEEC---TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred EcccccceeccccC--ceeecccceEcC---CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 56666665543333 456755 55664 3444444442 4466666666345566777633333589999999
Q ss_pred CEEEEEeCC
Q 005325 336 GLLLLALDC 344 (702)
Q Consensus 336 ~~l~~a~~d 344 (702)
.+++..+.+
T Consensus 340 ~y~v~~~s~ 348 (353)
T PF00930_consen 340 KYYVDTYSG 348 (353)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEcC
Confidence 988776554
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.24 E-value=0.00053 Score=80.89 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=142.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-------
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY------- 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~------- 135 (702)
..|.++.|-.++.- ++.++..|.|.+-|..+..+...+..+..| .+..+|||...++..+..+++.+-+..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~eivg~vd~GI-~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEIVGNVDNGI-SAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceeeeeeccCce-EEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 67888999888887 677788899999899887777777666544 455578899999999998888775431
Q ss_pred ---------CceEE-------EecCC-Cc-----------------------cceEEecCCCcEEEE-----ecC-CCEE
Q 005325 136 ---------GKHYS-------LRIPR-MG-----------------------RDMAYNSWSCDLLCA-----ASS-PELY 169 (702)
Q Consensus 136 ---------g~~~~-------~~i~~-~~-----------------------~~l~~~~~s~~llv~-----s~d-~~V~ 169 (702)
+.+.. +.+.. .+ ..+.|-.. +.+++. ..+ ..|.
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEEEEEeccCCceeEE
Confidence 00000 00100 00 01222222 223332 233 5688
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC
Q 005325 170 RINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG 246 (702)
Q Consensus 170 vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~ 246 (702)
+||-+ |..-.+-.....--.+++|-|.|.++++-.. |+.|.+|... |-.-..+....+ .....|..|+|+.+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p--~de~~ve~L~Wns~- 300 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFP--LDEKEVEELAWNSN- 300 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCc--ccccchheeeecCC-
Confidence 89877 4433222222334468999999999888643 5678888754 332333332211 11244999999999
Q ss_pred CCEEEE---EeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 247 GFLMGV---GSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 247 g~~Las---Gs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
+..||+ ......|.+|-+.+.....-..-...... -+.|+| .....+.+.+.+|.+.+++.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p--~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDP--VTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccC--CCceeEEEEecCCcEEEEEE
Confidence 899887 44445599999988664431111111111 188988 33455555555565555443
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.24 E-value=0.00075 Score=70.98 Aligned_cols=249 Identities=19% Similarity=0.219 Sum_probs=143.8
Q ss_pred EEEECCCCCEEEEEEec---------CCcEEEEEcCCceEEEeeecCC-------ceEEEEEEcCCCCEEEEEEC--CCe
Q 005325 67 KIRETPDGEFLIVSGIY---------PPQVKVYELRQLSLKFERHLDS-------EIINFEVLADDYSKLAFLCA--DRS 128 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~---------dg~I~vwdl~~~~~~~~~h~~~-------~vv~~~~ls~dg~~Las~s~--D~~ 128 (702)
.+.+||||+.+.+..++ .-.|.+||..++..+.+-..-. .-.....++.|+++++.... -.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 36789999996554443 3459999999977654332111 11123456667666655443 445
Q ss_pred EEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECC-CCeEEEEe----ecCCCC-eEEEEEcCCCCEEE
Q 005325 129 ISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLE-QGRFLSSL----NTQSPA-LNVVSRSKLHGLIA 202 (702)
Q Consensus 129 I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~-~g~~~~~l----~~h~~~-V~~l~~sp~~~lla 202 (702)
|.|-|+........++..+..+.|-..+..+...|.||.+....+. .|+..... .....+ +..-++...+..++
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE
Confidence 6666776555555555555555554445568888999999888887 56554321 111122 22333444555666
Q ss_pred EEEcCCeEEEEECCCCcce--eEEecccCC----CCCCCCeEEEEEcCCCCCEEEEEeCC---C-------eEEEEEcCC
Q 005325 203 CGGEDGAVECFDMRMRSSA--ARINAVAPA----GDADQEVTALEFDSNGGFLMGVGSST---G-------KVLIYDLRS 266 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~v--~~l~~~~~~----~~~~~~Vtslafspd~g~~LasGs~D---G-------~V~lwDlrs 266 (702)
.-+.+|.|+--|+...... ..+...... ....+.-.-+++++. ...|.+--.. | .|.+||+.+
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~-~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA-SGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT-TTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc-cCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 6788999999998865422 222211000 011234455778776 4444432221 1 388889999
Q ss_pred CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE-e-CCCEEEEEeCCCCceeEEecC
Q 005325 267 SYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT-T-DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 267 ~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s-~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
.+.+....- ..+|.+|..+. ++..+|.+ + .++.|.|||..+|+.+.++..
T Consensus 279 ~krv~Ri~l--~~~~~Si~Vsq---d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 279 HKRVARIPL--EHPIDSIAVSQ---DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TEEEEEEEE--EEEESEEEEES---SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CeEEEEEeC--CCccceEEEcc---CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 998874433 23788999995 55656654 3 589999999999999999876
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.22 E-value=0.0027 Score=65.09 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=136.1
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEE-ecC
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSL-RIP 144 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~-~i~ 144 (702)
++.|.+....|+++....+.|..|+..+.......... ...+++..++ ..|+.+...+. .+++.. +....+ ..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~~-~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGGI-AVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTCE-EEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCce-EEEecCCCcEEEEeecc
Confidence 57788855555888888999999999886554433212 4556655466 56666666554 444765 332222 221
Q ss_pred ----CCc--cceEEecCCCcEEEEecC---------CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE-EEEcCC
Q 005325 145 ----RMG--RDMAYNSWSCDLLCAASS---------PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA-CGGEDG 208 (702)
Q Consensus 145 ----~~~--~~l~~~~~s~~llv~s~d---------~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla-sgs~DG 208 (702)
... .++++.+... ++++... +.|++++.. ++..... ..-...+.|+|+|+++.|+ +-+..+
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence 111 2677777654 6666543 458999988 6544333 3345689999999997655 566788
Q ss_pred eEEEEECCCCcc-e---eEE-ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEE
Q 005325 209 AVECFDMRMRSS-A---ARI-NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVD 283 (702)
Q Consensus 209 ~V~iWD~~t~~~-v---~~l-~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~s 283 (702)
.|..+++..... + ..+ ... ......-.|+++.+ |.+.++....+.|.++|.. ++.+....-. ...+++
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~----~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~ 229 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFP----GGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTN 229 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-S----SSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEE
T ss_pred eeEEEeccccccceeeeeeEEEcC----CCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEE
Confidence 999999864322 2 122 222 01134788999999 8888888889999999988 7776643332 347899
Q ss_pred EEEeeccCCCCCeEEEe
Q 005325 284 IKWHQSINTERPKLITT 300 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss 300 (702)
++|.. .+...|++++
T Consensus 230 ~~fgg--~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGG--PDGKTLYVTT 244 (246)
T ss_dssp EEEES--TTSSEEEEEE
T ss_pred EEEEC--CCCCEEEEEe
Confidence 99952 1334555554
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=0.00056 Score=68.12 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=94.7
Q ss_pred ECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccc
Q 005325 70 ETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRD 149 (702)
Q Consensus 70 ~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~ 149 (702)
+-+|.+.+++.|+..+.+..-|..+..+.++.-....+.....+- |..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv--gdf------------------------------ 65 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV--GDF------------------------------ 65 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE--CCE------------------------------
Confidence 345556667788888877777777766666655444333222221 122
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEE-EEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEeccc
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNV-VSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~-l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
+++++..+.+|+++..+|.....+..-. .|.+ ....+++.++.+|+.|++.+..|+++..++....+.
T Consensus 66 ---------VV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg- 134 (354)
T KOG4649|consen 66 ---------VVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG- 134 (354)
T ss_pred ---------EEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-
Confidence 4455556667778888886665554432 2222 235678999999999999999999999999998887
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
.....+-+..|. ...|.+++..|.|.--.....
T Consensus 135 -----G~~f~sP~i~~g-~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 135 -----GGTFVSPVIAPG-DGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred -----CceeccceecCC-CceEEEEeccceEEEEccCCC
Confidence 344445556664 344555556666655555443
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=5.1e-05 Score=85.60 Aligned_cols=194 Identities=14% Similarity=0.120 Sum_probs=134.2
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHA 133 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~ 133 (702)
+..+.+-...+++|++++ +++ ++-|+..|.|++++......+...| .+ ...+|.++++|+.||+|.|-.
T Consensus 31 n~~~~~~~~D~is~~av~--~~~-~~~GtH~g~v~~~~~~~~~~~~~~~-s~-------~~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 31 NLVKNFLQNDAISCCAVH--DKF-FALGTHRGAVYLTTCQGNPKTNFDH-SS-------SILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cccHHHHhhhHHHHHHhh--cce-eeeccccceEEEEecCCcccccccc-cc-------cccCCceEEEecCCCcEEEee
Confidence 344555556778888886 356 8999999999999887643222222 11 156789999999999999987
Q ss_pred cC--CceEEEecCCCccceEEecC-----CCcEEEEecCCCEEEEEC--CCCeEEEEeecCCCCeEEEEEcCCCCEEEEE
Q 005325 134 KY--GKHYSLRIPRMGRDMAYNSW-----SCDLLCAASSPELYRINL--EQGRFLSSLNTQSPALNVVSRSKLHGLIACG 204 (702)
Q Consensus 134 ~~--g~~~~~~i~~~~~~l~~~~~-----s~~llv~s~d~~V~vwdl--~~g~~~~~l~~h~~~V~~l~~sp~~~llasg 204 (702)
.. .......+......++++|. +..+++++..| +.++.- -..+....+....++|.+|.|. |+++|-+
T Consensus 100 l~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 100 LFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred ccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 66 24444566667778888887 23367777766 666421 1111111344556799999997 7799998
Q ss_pred EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 205 GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 205 s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
+.+| |++||+.+++.+..+..+.........-..+.|.++ ..|+.|=. .+|+|..++
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIK 233 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEecC-CeEEEEEEe
Confidence 8876 899999999998888877433333445567899866 56666544 468888887
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=7e-06 Score=84.11 Aligned_cols=133 Identities=8% Similarity=0.084 Sum_probs=95.1
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCC-----eEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcc--
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQG-----RFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSS-- 220 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g-----~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~-- 220 (702)
++.|+...+-++.++.++.|..+|+..+ .+... --|.+.|+|+..-. +.++|++.+.+|+|.+||+|.-++
T Consensus 257 AlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~ 335 (425)
T KOG2695|consen 257 ALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK 335 (425)
T ss_pred HHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc
Confidence 4555555666888889999999999865 22222 35888999998776 668888888999999999997666
Q ss_pred -eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccC---CCCeEEEEEe
Q 005325 221 -AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMF---DSPIVDIKWH 287 (702)
Q Consensus 221 -v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~---~~~I~sl~fs 287 (702)
+.++..|.+. ..-.-+-.++. ...+++++.|...+||.++++..+......+ ...|.+++|.
T Consensus 336 ~V~qYeGHvN~----~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 336 SVMQYEGHVNL----SAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ceeeeeccccc----ccccccccccc-cceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 8888887321 11122334556 5677789999999999999999887543322 2246666665
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.3e-05 Score=80.23 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=136.9
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCC--ceEEEEEEcCCCCEEEEEEC-CCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDS--EIINFEVLADDYSKLAFLCA-DRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~--~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g 136 (702)
|...|+.+..+. -++ +.+++.||.++.|--.. ....|..|..+ .++..++.+.++..+.+.+. |..++++++..
T Consensus 8 hrd~i~hv~~tk-a~f-iiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKF-IIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh-hhe-EEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 444555554433 345 89999999999998766 33344433222 23445567788888888777 99999998763
Q ss_pred c--eEEEecCCCccceEEecCCCc----EEEE-ecCCCEEEEECCCCe--EEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 137 K--HYSLRIPRMGRDMAYNSWSCD----LLCA-ASSPELYRINLEQGR--FLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 137 ~--~~~~~i~~~~~~l~~~~~s~~----llv~-s~d~~V~vwdl~~g~--~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
. ..-++++-....+.+....++ +.+. ..++.+.++|-...- ....-..|..+|.++.++|.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 2 222333333333444444442 3232 345678899865433 233345699999999999999999999999
Q ss_pred CeEEEEECCC-Cc-----ceeEEecccC---CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 208 GAVECFDMRM-RS-----SAARINAVAP---AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 208 G~V~iWD~~t-~~-----~v~~l~~~~~---~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
|.|..|.... .+ ....+..... ........+++.|+|+ |..+++-+.|..|+++++++++.+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhh
Confidence 9999998872 11 1111111100 0122577899999999 9999999999999999999887544
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0042 Score=70.53 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=90.7
Q ss_pred CEEEEECCCCeEEEEeecCCCCeE------EEEEc----CCC---CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCC
Q 005325 167 ELYRINLEQGRFLSSLNTQSPALN------VVSRS----KLH---GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDA 233 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~~V~------~l~~s----p~~---~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~ 233 (702)
.|+-+|+.+|+.+..++.-...+. ...+. -++ .++++++.+|.|...|..+++.+.......
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----- 331 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----- 331 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-----
Confidence 699999999999887653211110 01111 122 368888899999999999999887765420
Q ss_pred CCCeEEEEEcCCCCCEEEE------------------EeCCCeEEEEEcCCCeEEEEeeccC-------CCCe--EEEEE
Q 005325 234 DQEVTALEFDSNGGFLMGV------------------GSSTGKVLIYDLRSSYPIRVKDHMF-------DSPI--VDIKW 286 (702)
Q Consensus 234 ~~~Vtslafspd~g~~Las------------------Gs~DG~V~lwDlrs~~~l~~~~h~~-------~~~I--~sl~f 286 (702)
..++.+|+ .+.+ ...+|.|.-+|+.+++.+....... +.++ ..+..
T Consensus 332 ----~~~~~~~~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 332 ----QPMAYDPG---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred ----cccccCCc---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe
Confidence 11222322 1221 2346889999999999887544310 0121 12222
Q ss_pred eeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCcee
Q 005325 287 HQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKIN 327 (702)
Q Consensus 287 sp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~ 327 (702)
. ++.+++++.|+.|..+|..+|+.+.+.+. .+.+.
T Consensus 405 ~-----g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~ 439 (488)
T cd00216 405 A-----GNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQ 439 (488)
T ss_pred c-----CCeEEEECCCCeEEEEECCCCceeeEEEC-CCCce
Confidence 2 56677777899999999999999998876 44443
No 321
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.017 Score=64.06 Aligned_cols=205 Identities=14% Similarity=0.152 Sum_probs=116.9
Q ss_pred EEEECCCCCEEEEEEe----------cCC-cEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005325 67 KIRETPDGEFLIVSGI----------YPP-QVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 67 ~i~~SpDG~~llatGs----------~dg-~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~ 134 (702)
.++.+|.|-. +|... ..+ .|.||+.....+ .+... ...++.+.|.. + ..|+....||.+++++.
T Consensus 33 ~va~a~~gGp-IAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~-~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 33 IVAVAPYGGP-IAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWD-SGRIVGMGWTD-D-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred eEEEcCCCce-EEEEecCcccccccCCCCcEEEEECCCCCEeEEEEEC-CCCEEEEEECC-C-CeEEEEEcCCEEEEEeC
Confidence 3566666665 33332 223 499999887333 22222 25677777755 3 77888999999999999
Q ss_pred CCceEEEecCCCcc------ceEEe--cCCCcEEEEecCCCEEEEECCCCe-EEEEe---ec-----CCC-CeEE-EEEc
Q 005325 135 YGKHYSLRIPRMGR------DMAYN--SWSCDLLCAASSPELYRINLEQGR-FLSSL---NT-----QSP-ALNV-VSRS 195 (702)
Q Consensus 135 ~g~~~~~~i~~~~~------~l~~~--~~s~~llv~s~d~~V~vwdl~~g~-~~~~l---~~-----h~~-~V~~-l~~s 195 (702)
.|.. .+.++.... +..+. .+..-+++...++.+++.+-.... ....+ .. |.. .+.. ..++
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 8877 444333221 21111 222346666677777776433322 11111 00 000 0111 2233
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h 275 (702)
.++...+....++.|.+.+...... +.. .+++..|++||+ |.+||.-+.+|.+.|+...-.+.+.....
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~~-------~~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---IDS-------DGPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---ccC-------CCCeEEEEECCC-CCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4444444445555555444332111 222 368999999999 99999999999999998776666554333
Q ss_pred cCCCCeEEEEEe
Q 005325 276 MFDSPIVDIKWH 287 (702)
Q Consensus 276 ~~~~~I~sl~fs 287 (702)
....+...+.|.
T Consensus 257 ~~~~~p~~~~WC 268 (410)
T PF04841_consen 257 DSKSPPKQMAWC 268 (410)
T ss_pred CcCCCCcEEEEE
Confidence 223566788887
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.05 E-value=0.00094 Score=74.16 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=107.3
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce--EEEe
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH--YSLR 142 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~--~~~~ 142 (702)
...+.++|+|+++++ ..+|...||.......+..+. -..++|.+ . +.+|+....++|.|+.-.... ..+.
T Consensus 35 p~~ls~npngr~v~V--~g~geY~iyt~~~~r~k~~G~----g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV--CGDGEYEIYTALAWRNKAFGS----GLSFVWSS-R-NRYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE-TTSSEEEE--EETTEEEEEETTTTEEEEEEE-----SEEEE-T-S-SEEEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEECCCCCEEEE--EcCCEEEEEEccCCcccccCc----eeEEEEec-C-ccEEEEECCCeEEEEEcCccccceEEc
Confidence 678999999999655 457888888855544444333 25677777 3 668888889999997433211 2333
Q ss_pred cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC----
Q 005325 143 IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR---- 218 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~---- 218 (702)
.+.....+.. +.++....++.|.+||+++++.+..+... .|..|.|++++.+++..+.+ ++.|++....
T Consensus 107 ~~~~~~~If~----G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 107 LPFSVEKIFG----GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp -SS-EEEEE-----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred CCcccceEEc----CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence 4432333333 55566666668999999999999988644 48999999999999998865 7778775532
Q ss_pred -------cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 219 -------SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 219 -------~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
..+..+..- ...|.+.+|..+ .|+-.+.. +|+- +..|....+..- ..++.=+.+.|
T Consensus 180 ~~~~g~e~~f~~~~E~------~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge~~~i~~l--d~~~yllgy~~ 242 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEI------SERIKSGCWVED---CFIYTTSN-HLKY--LVNGETGIIAHL--DKPLYLLGYLP 242 (443)
T ss_dssp BTTTB-GGGEEEEEEE-------S--SEEEEETT---EEEEE-TT-EEEE--EETTEEEEEEE---SS--EEEEEET
T ss_pred ccccCchhceEEEEEe------cceeEEEEEEcC---EEEEEcCC-eEEE--EEcCCcceEEEc--CCceEEEEEEc
Confidence 133344331 267889999833 44444444 6654 555554332222 33555555553
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.9e-05 Score=79.88 Aligned_cols=220 Identities=15% Similarity=0.097 Sum_probs=140.6
Q ss_pred eeeeecc-cCCCceeEEEECCCCCEEEEEEec-CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCC----CEEEEEECC
Q 005325 53 VELIQDL-WFETATTKIRETPDGEFLIVSGIY-PPQVKVYELRQLSLKFERHLDSEIINFEVLADDY----SKLAFLCAD 126 (702)
Q Consensus 53 ieliqd~-~~~~~v~~i~~SpDG~~llatGs~-dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg----~~Las~s~D 126 (702)
++.+..| .|-..+.+++.|-||-. ++|+.. |..+++||+.+..+.-.......+-.+.|+...| ..-++.-.+
T Consensus 43 vEfVKhFraHL~~I~sl~~S~dg~L-~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSYDGWL-FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKS 121 (558)
T ss_pred eeehhhhHHHHHHHHhhhcccccee-EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccC
Confidence 3444444 35667788899999977 888766 9999999998843321111122223344544444 222444568
Q ss_pred CeEEEEecCCceEE----EecCCC-ccceEEecCCCcEEEEecCCCEEEEECCC-CeE-----EEEeec---------CC
Q 005325 127 RSISLHAKYGKHYS----LRIPRM-GRDMAYNSWSCDLLCAASSPELYRINLEQ-GRF-----LSSLNT---------QS 186 (702)
Q Consensus 127 ~~I~iw~~~g~~~~----~~i~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~-----~~~l~~---------h~ 186 (702)
+.|.|++..+.... ..++.. ...+.|++.....++...+|.|-.|..+. -++ ...++. ..
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 89999988753322 222222 22666666666677777788999998872 221 111211 23
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC--------------------------CCC-CCCeEE
Q 005325 187 PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA--------------------------GDA-DQEVTA 239 (702)
Q Consensus 187 ~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~--------------------------~~~-~~~Vts 239 (702)
....++.|+|++..+.+-+.|..|++++..+++.++.+...... ..| ...-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 46789999999999999999999999999999887776543110 001 223355
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h 275 (702)
++|... |++|+-|+-=| |+|.++.++.++.+.+.
T Consensus 282 ~~fdes-~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 282 AVFDES-GNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred eEEcCC-CCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 677777 77777776655 67788888777776655
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=0.0099 Score=59.48 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=137.3
Q ss_pred CCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEecCCCcc-c
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLRIPRMGR-D 149 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~~~~-~ 149 (702)
-|.+ ++.|.|.|.+.+.+..+.+.-+....-..|-.-....+++..+..++.|++...-|.. +..++.+.+.... .
T Consensus 62 vgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCE-EEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 4677 8999999999999998854433332223333444567788999999999999988877 5566655554333 3
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC--CCeEE--EEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS--PALNV--VSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~--~~V~~--l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
-+..+....|+++...|.|...+..++.+.. +-.|+ .+|.+ +++ +..+..++-||.+..+| .+++.+..+.
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~~~~~~-~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNPYSSTE-FWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCCCCcce-ehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 3444445668888888888877776663321 11111 12211 111 23445555566666555 3344444333
Q ss_pred cccC-----CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE-EE
Q 005325 226 AVAP-----AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL-IT 299 (702)
Q Consensus 226 ~~~~-----~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll-~s 299 (702)
...+ +..| .....|.+... +-..+..-..| -.+|...++..+.... .|-....++........++ .+
T Consensus 216 t~GpIf~~Pc~s~-Ps~q~i~~~~~-~Cf~~~~p~~g-hL~w~~~~g~t~~vy~----~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 TKGPIFMEPCESR-PSCQQISLENE-NCFCAPLPIAG-HLLWATQSGTTLHVYL----SPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred CCCceecccccCC-CcceEEEEecC-CeEEEeccccc-eEEEEecCCcEEEEEe----CcccceeccCCCCcchhhhhhh
Confidence 2200 0001 01122222222 22222222222 3456666654333211 1212223321111112344 45
Q ss_pred eCCCEEEEEeCCCCceeEEecCCCCceeEEE--------E-Ec--CCCEEEEEeCCCcEEEEEcC
Q 005325 300 TDNHIVRIWDPETGESMTSIEPTAGKINDVC--------V-FK--DSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 300 s~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~--------~-~p--~~~~l~~a~~d~~I~~~~ip 353 (702)
+.||.+.|.-+ .+.+.++..|.+.+..+. | +| -+++|++++.|..++.|.+.
T Consensus 289 s~dgkv~il~~--~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 289 SGDGKVMILMT--SKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred cCCCcEEEEEe--cccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecc
Confidence 57887766633 233444444444333332 2 22 24679999999999888653
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.02 E-value=0.00083 Score=69.84 Aligned_cols=204 Identities=15% Similarity=0.188 Sum_probs=119.0
Q ss_pred EEECCCCCEEEEEE----ecCCcEEEEEcCC-ceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE
Q 005325 68 IRETPDGEFLIVSG----IYPPQVKVYELRQ-LSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS 140 (702)
Q Consensus 68 i~~SpDG~~llatG----s~dg~I~vwdl~~-~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~ 140 (702)
-.||+||++|++|- +..|.|-|||... +.. .|..+ .-.+..+. +.+|+..|+.+- |-|.-+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~-GIGPHel~-l~pDG~tLvVAN--GGI~Th-------- 123 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH-GIGPHELL-LMPDGETLVVAN--GGIETH-------- 123 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC-CcChhhEE-EcCCCCEEEEEc--CCCccC--------
Confidence 57999999966663 3468899999994 332 33333 11223333 567776665542 222211
Q ss_pred EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee----cCCCCeEEEEEcCCCCEEEEEEcCCe-------
Q 005325 141 LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN----TQSPALNVVSRSKLHGLIACGGEDGA------- 209 (702)
Q Consensus 141 ~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~----~h~~~V~~l~~sp~~~llasgs~DG~------- 209 (702)
|..++ ..|=+......+..+|..+|+.+.... .|.-.|..|++++++..++..-..|.
T Consensus 124 ---pd~GR--------~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PL 192 (305)
T PF07433_consen 124 ---PDSGR--------AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPL 192 (305)
T ss_pred ---cccCc--------eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCe
Confidence 11111 001222334456667888888776643 37778999999999866665554432
Q ss_pred EEEEECCCCcceeEEecccCC-CCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEe
Q 005325 210 VECFDMRMRSSAARINAVAPA-GDADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWH 287 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~-~~~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fs 287 (702)
|-+|+. +..+..+...... ..-...|-+|+++++ +..++ ++-..|.+.+||..++..+..... ..+..++-.
T Consensus 193 va~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~-g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l---~D~cGva~~ 266 (305)
T PF07433_consen 193 VALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRD-GRLIAVTSPRGGRVAVWDAATGRLLGSVPL---PDACGVAPT 266 (305)
T ss_pred EEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCC-CCEEEEECCCCCEEEEEECCCCCEeecccc---Cceeeeeec
Confidence 333333 2323333322100 112478999999999 77665 555678999999999998764433 245666665
Q ss_pred eccCCCCCeEEEeCCCEE
Q 005325 288 QSINTERPKLITTDNHIV 305 (702)
Q Consensus 288 p~~~~~~~ll~ss~Dg~V 305 (702)
+ ++ +++++..|.+
T Consensus 267 ~----~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 267 D----DG-FLVSSGQGQL 279 (305)
T ss_pred C----Cc-eEEeCCCccE
Confidence 3 44 5555555543
No 326
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.02 E-value=4.1e-05 Score=77.47 Aligned_cols=209 Identities=12% Similarity=0.168 Sum_probs=134.1
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCeEEEEecC---CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE
Q 005325 104 DSEIINFEVLADDYSKLAFLCADRSISLHAKY---GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS 180 (702)
Q Consensus 104 ~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~---g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~ 180 (702)
....++.+-+...|.+|++|...|.|.++... |+.+. +..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk-------------------------------------f~t 67 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK-------------------------------------FFT 67 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchh-------------------------------------hhh
Confidence 44557777788888899999888888887543 22222 112
Q ss_pred EeecCC------------CCeEEEEEcCCC--CEEEEEEcCCeEEEEECCCCcc--ee----------------------
Q 005325 181 SLNTQS------------PALNVVSRSKLH--GLIACGGEDGAVECFDMRMRSS--AA---------------------- 222 (702)
Q Consensus 181 ~l~~h~------------~~V~~l~~sp~~--~llasgs~DG~V~iWD~~t~~~--v~---------------------- 222 (702)
.|++|. ..|+.|.|..++ ..++..+.|.+|++|-+..... +.
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l 147 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL 147 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh
Confidence 222222 257888887554 5566668899999999875410 00
Q ss_pred ---EEecc------c----CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe----EEEEeeccC---CCCeE
Q 005325 223 ---RINAV------A----PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY----PIRVKDHMF---DSPIV 282 (702)
Q Consensus 223 ---~l~~~------~----~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~----~l~~~~h~~---~~~I~ 282 (702)
.+..| . -...|..-|.+|.|+.| ...+++ ..|=.|.+|++.-.. .+-++.|.+ ..-|+
T Consensus 148 ~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVIt 225 (460)
T COG5170 148 LLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVIT 225 (460)
T ss_pred hcccccccceEEEeccceeccccceeEeeeeeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHh
Confidence 00000 0 01346677899999988 555555 677889999987432 333566632 23589
Q ss_pred EEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce------eEE----------ecCCCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 283 DIKWHQSINTERPKLITTDNHIVRIWDPETGES------MTS----------IEPTAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~------l~~----------i~~h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
+..||| .....+..+++.|.|++-|++...+ +.. ++.-...|.++.|++++.++++- +--.
T Consensus 226 SaeFhp--~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dylt 302 (460)
T COG5170 226 SAEFHP--EMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLT 302 (460)
T ss_pred hcccCH--hHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccce
Confidence 999999 3366677788999999999983211 111 11113478999999998876654 4456
Q ss_pred EEEEEcCC
Q 005325 347 IPSYFIPD 354 (702)
Q Consensus 347 I~~~~ip~ 354 (702)
+.+|.+..
T Consensus 303 vkiwDvnm 310 (460)
T COG5170 303 VKIWDVNM 310 (460)
T ss_pred EEEEeccc
Confidence 88888754
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.0019 Score=71.74 Aligned_cols=213 Identities=13% Similarity=0.129 Sum_probs=117.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEE-ECCCCeEEEEeecCCC
Q 005325 109 NFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRI-NLEQGRFLSSLNTQSP 187 (702)
Q Consensus 109 ~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vw-dl~~g~~~~~l~~h~~ 187 (702)
..+.++|+++.++. +.|+...|+...+..... ...+..++|.. ++.+++...+..|.++ |+. ......+....
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~-~~~~k~i~~~~- 109 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFK-NEVVKSIKLPF- 109 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTE-E-TT-----SS-
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--cCceeEEEEec-CccEEEEECCCeEEEEEcCc-cccceEEcCCc-
Confidence 44557888888877 556677777644333222 23344677777 5667777777788885 332 21112222221
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
.+..|- + |.+|+..+. +.|.+||+.+++.+..+... +|..|.|+++ |.++|..+.+ .+.|++....
T Consensus 110 ~~~~If--~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--------~vk~V~Ws~~-g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 110 SVEKIF--G-GNLLGVKSS-DFICFYDWETGKLIRRIDVS--------AVKYVIWSDD-GELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---------E-EEEEE-TT-SSEEEEE-S--SEEEEEE-HH
T ss_pred ccceEE--c-CcEEEEECC-CCEEEEEhhHcceeeEEecC--------CCcEEEEECC-CCEEEEEeCC-eEEEEEecch
Confidence 233332 2 777777665 48999999999999999876 4999999999 9999988755 5666665433
Q ss_pred ------------eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce--eEEecCCCCceeEEEEEc
Q 005325 268 ------------YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES--MTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 268 ------------~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~--l~~i~~h~~~I~~v~~~p 333 (702)
....+... ...|.+.+|. +.-++.++.. .|+-+ -.|+. +.++ ..++.=+.+.|
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~-----~d~fiYtT~~-~lkYl--~~Ge~~~i~~l---d~~~yllgy~~ 242 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI--SERIKSGCWV-----EDCFIYTTSN-HLKYL--VNGETGIIAHL---DKPLYLLGYLP 242 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE---S--SEEEEE-----TTEEEEE-TT-EEEEE--ETTEEEEEEE----SS--EEEEEET
T ss_pred hcccccccCchhceEEEEEe--cceeEEEEEE-----cCEEEEEcCC-eEEEE--EcCCcceEEEc---CCceEEEEEEc
Confidence 22223321 3589999998 3455555554 67663 33443 3333 44677777888
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 005325 334 DSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip~ 354 (702)
..+.++....+..+..|.++.
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--H
T ss_pred cCCEEEEEECCCCEEEEEECH
Confidence 888899999999999998764
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.00 E-value=1.9e-05 Score=56.02 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=34.7
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD 263 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD 263 (702)
+++.++..| ...|++|+|+|+ +.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h------~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGH------SSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESS------SSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCC------CCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 466777777 799999999999 99999999999999997
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0002 Score=75.04 Aligned_cols=229 Identities=17% Similarity=0.109 Sum_probs=138.8
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||...||+...+.+|.++|.++.+. -..+.+..+..+.+++|.-|....|..|
T Consensus 201 fSp~~~GLl~~asl~nkiki~dlet~--------------------------~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 201 FSPFNEGLLGLASLGNKIKIMDLETS--------------------------CVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cCccccceeeeeccCceEEEEecccc--------------------------eeeeheeccCCceeeeeccCCcceeEEe
Confidence 35666777777888899999999776 2344455567889999999988889999
Q ss_pred ecCCcEEEEEcCCce---EEEee-ecCCceEEEEEEcCC-----CCEEEEEECCCeEEEEecCCc------eEEEecCCC
Q 005325 82 IYPPQVKVYELRQLS---LKFER-HLDSEIINFEVLADD-----YSKLAFLCADRSISLHAKYGK------HYSLRIPRM 146 (702)
Q Consensus 82 s~dg~I~vwdl~~~~---~~~~~-h~~~~vv~~~~ls~d-----g~~Las~s~D~~I~iw~~~g~------~~~~~i~~~ 146 (702)
...|.|.|||+.... +.+.. -...+++.+..++++ +..|+....+ +.+|...+. ...+..|..
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 999999999998722 12222 223344444444433 3444444333 567766521 122333444
Q ss_pred ccceEEecCCCcEEEEecCCC--------EEEEECCCCeEEEEe-ecCCC-------CeEEEEEcCCCCEE-EEEEcCCe
Q 005325 147 GRDMAYNSWSCDLLCAASSPE--------LYRINLEQGRFLSSL-NTQSP-------ALNVVSRSKLHGLI-ACGGEDGA 209 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~--------V~vwdl~~g~~~~~l-~~h~~-------~V~~l~~sp~~~ll-asgs~DG~ 209 (702)
..++.|++.+..+++....+- +...|-.+|.++..- .+|.+ .-..+--.++.++| .+|.....
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 447777777777666554421 112344455444321 11211 01112112344444 44555688
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
+.+||+.+...++++... .+|..++....++.-++..-.|..++||...
T Consensus 413 lil~D~~s~evvQ~l~~~-------epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 413 LILQDPHSFEVVQTLALS-------EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eEEeccchhheeeecccC-------cceeecceeecCCcchhhheecceEEEEecC
Confidence 999999999999999887 7888887765434444444566778888644
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.98 E-value=0.0011 Score=74.98 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=87.8
Q ss_pred cCCCCEEEEEEcCCeEEEEECCC-----CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCCe
Q 005325 195 SKLHGLIACGGEDGAVECFDMRM-----RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV-GSSTGKVLIYDLRSSY 268 (702)
Q Consensus 195 sp~~~llasgs~DG~V~iWD~~t-----~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~DG~V~lwDlrs~~ 268 (702)
.+++.+... .++.|.+.|.++ ...+..+... .....|.++|| |.++++ +..+.+|.|+|+.+.+
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPD-GkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPD-GKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCC-CCEEEEeCCCCCcEEEEEChhhh
Confidence 346665555 357899999998 4566677766 67889999999 887665 4568999999998754
Q ss_pred E-----------EE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC----------CceeEEecCCCCc
Q 005325 269 P-----------IR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET----------GESMTSIEPTAGK 325 (702)
Q Consensus 269 ~-----------l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t----------g~~l~~i~~h~~~ 325 (702)
. +. ...- +..-...+|.+ .+...++- -|..|..||+.+ ...+..+..|-.+
T Consensus 355 ~~~~~~~~~~~~vvaevev--GlGPLHTaFDg----~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPEL--GLGPLHTAFDG----RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred hhhhccCCccceEEEeecc--CCCcceEEECC----CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 2 11 1111 33345678875 44555544 588999999976 3345555554332
Q ss_pred eeEE-----EEEcCCCEEEEEeCCCc
Q 005325 326 INDV-----CVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 326 I~~v-----~~~p~~~~l~~a~~d~~ 346 (702)
..-. .-.|++.+|++.+.-..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~nk~sk 454 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLNKFSK 454 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcccccc
Confidence 2211 12567777777665443
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0024 Score=70.01 Aligned_cols=243 Identities=18% Similarity=0.228 Sum_probs=126.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECC--------CC-e
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLE--------QG-R 177 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~--------~g-~ 177 (702)
+..+.++++..-|+.+...|.|.||.... ..+.-+......++.+.+.+ ..++.-.+.|+. .| .
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc------ccCCCcceEEehhhCCcccccccC
Confidence 45556777778899999999999985542 11110000000011110000 000111112221 11 1
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEeccc--CCCCCCCCeEEEEEcC---C-CC---C
Q 005325 178 FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVA--PAGDADQEVTALEFDS---N-GG---F 248 (702)
Q Consensus 178 ~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~--~~~~~~~~Vtslafsp---d-~g---~ 248 (702)
.+..+....+.|++++.+ +-.++|.|..+|.+.|.|+|....+..-.... ........|++|.|+- . ++ -
T Consensus 78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 223344557899999997 45699999999999999999887777644442 1223356789998862 1 13 5
Q ss_pred EEEEEeCCCeEEEEEcC-C--Ce-EEEEeec--cCCCCeEEEEEe-ecc-----------------CCCCCeEEEeCCCE
Q 005325 249 LMGVGSSTGKVLIYDLR-S--SY-PIRVKDH--MFDSPIVDIKWH-QSI-----------------NTERPKLITTDNHI 304 (702)
Q Consensus 249 ~LasGs~DG~V~lwDlr-s--~~-~l~~~~h--~~~~~I~sl~fs-p~~-----------------~~~~~ll~ss~Dg~ 304 (702)
.|++|+..|.+.+|.+- . +. .+.+.+. .+..+|..|... ... ..-..+++.+.+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 78999999999999885 2 21 1111111 135677777633 110 01123566666788
Q ss_pred EEEEeCCCCceeEEecCCCCceeEEEEEc-----CCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 305 VRIWDPETGESMTSIEPTAGKINDVCVFK-----DSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 305 V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-----~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
|+|+...+.+.........-....+++.+ .+..|++-..+|.+.+|.+|.|.+
T Consensus 237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99999998887766554223444455642 456677788999999999999865
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.0019 Score=71.47 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 185 QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 185 h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
..+.|.|++++|+...|+.|+.||+|.+||...+... +... .-.++.++|+|+ |..|++|+..|.+.+||+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka------~~~P~~iaWHp~-gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKA------EFIPTLIAWHPD-GAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeee------cccceEEEEcCC-CcEEEEEcCCceEEEEEe
Confidence 4557999999999999999999999999999866332 2222 367899999999 999999999999999998
Q ss_pred CCC
Q 005325 265 RSS 267 (702)
Q Consensus 265 rs~ 267 (702)
.-+
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 754
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00012 Score=82.52 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=134.7
Q ss_pred CCeEEEEecCCc-eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE
Q 005325 126 DRSISLHAKYGK-HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG 204 (702)
Q Consensus 126 D~~I~iw~~~g~-~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg 204 (702)
.|+|.|+.-.|. ...+..|-+..+++|+|..--|+.+-.-+.+.+|+..+.+.......|..+|..+.|+|+|+.++++
T Consensus 40 ~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred CceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEc
Confidence 566777754443 2223345555577777766667778788899999998888877778899999999999999999999
Q ss_pred EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEE--cCCCCC------EEEEEeCCCeEE-EEEcCCCeEEEEeec
Q 005325 205 GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEF--DSNGGF------LMGVGSSTGKVL-IYDLRSSYPIRVKDH 275 (702)
Q Consensus 205 s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslaf--spd~g~------~LasGs~DG~V~-lwDlrs~~~l~~~~h 275 (702)
..-|.|.+|.......++....-.. .....++-++| +++ +. ..++.+.+.-+- .++.+....-....|
T Consensus 120 d~~g~v~lwr~d~~g~~q~~~~~~h--el~~~ltl~cfRL~~~-~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k 196 (1416)
T KOG3617|consen 120 DNPGSVHLWRYDVIGEIQTSNIMQH--ELNDQLTLWCFRLSYD-REEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK 196 (1416)
T ss_pred CCCceeEEEEeeeccccccchhhhh--HhhceeeEEEEecCCC-hHHhhhhhhhhccCchhhhcccccCccchhhccccc
Confidence 9999999998774333333222100 11244555554 444 22 223333333222 333221110000111
Q ss_pred cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 276 MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 276 ~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.. .| .+..+++++.+|+|+-.|- .|+....... .+.| .+-|++....+.+..++-++..|++|+-
T Consensus 197 --------sg-v~---~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~-dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~ 261 (1416)
T KOG3617|consen 197 --------SG-VP---KGTEFLFAGKSGTVYYVDQ-NGRQRTVHKL-DSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAK 261 (1416)
T ss_pred --------cC-CC---CCcEEEEEcCCceEEEEcC-CCcEEEEEEc-cchH-HHHHhcccceEEEEeeeceeeEEEecCC
Confidence 11 11 3555667778999877664 3565555544 3333 3458887777888888888888888887
Q ss_pred CCCCCcc
Q 005325 356 GPTPKWC 362 (702)
Q Consensus 356 g~ap~Wc 362 (702)
|.+..-|
T Consensus 262 G~~ee~~ 268 (1416)
T KOG3617|consen 262 GTSEERC 268 (1416)
T ss_pred CchHHhh
Confidence 7655444
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=6.7e-06 Score=90.32 Aligned_cols=226 Identities=19% Similarity=0.202 Sum_probs=141.1
Q ss_pred CEEEEEECCCeEEEEecCCceEE--EecCCC---ccceEEecCCCcEEEEecC-----CCEEEEECCCC--eEEE--Eee
Q 005325 118 SKLAFLCADRSISLHAKYGKHYS--LRIPRM---GRDMAYNSWSCDLLCAASS-----PELYRINLEQG--RFLS--SLN 183 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~g~~~~--~~i~~~---~~~l~~~~~s~~llv~s~d-----~~V~vwdl~~g--~~~~--~l~ 183 (702)
..++.|..+|.|.+-.....+.. .-+|++ +.++++++-....++++.+ ..+.+||+.++ .+.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 45577778888888766543332 223443 4467777766666666653 45899999887 2211 122
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 005325 184 T-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI 261 (702)
Q Consensus 184 ~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l 261 (702)
+ -....++++|..++.++.+|.....|.++|+|. ...+..+. ...|..+.++|-.+.++++-. ||.|.+
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~~nY~cs~~-dg~iAi 221 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFSPNYFCSNS-DGDIAI 221 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCCCCceeccc-cCceee
Confidence 2 334677999998899999999999999999993 22233332 235677888884377777754 999999
Q ss_pred EE-cCCCe-EEEEeeccC---CCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC-C-----c--e---eEE---ecC
Q 005325 262 YD-LRSSY-PIRVKDHMF---DSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET-G-----E--S---MTS---IEP 321 (702)
Q Consensus 262 wD-lrs~~-~l~~~~h~~---~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g-----~--~---l~~---i~~ 321 (702)
|| .++-+ |+....|.. ...+..++|.|.. .+.+++.. +.++|+++|+.. + . . ..+ +++
T Consensus 222 wD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~ 299 (783)
T KOG1008|consen 222 WDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQP 299 (783)
T ss_pred ccchhhhccHHHHHhhCCCCcccceeeEEeccCC--cchhhhhccCcceEEEecccccCCcccccccceeeecccccccc
Confidence 99 55543 444333310 1248999999943 34444433 789999999853 1 1 1 111 333
Q ss_pred CC--CceeEEEEEcCC--CEEEEEeCCCcEEEEEcCC
Q 005325 322 TA--GKINDVCVFKDS--GLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 322 h~--~~I~~v~~~p~~--~~l~~a~~d~~I~~~~ip~ 354 (702)
.. ..|.++.||+.+ ...+++...-++.-|.++.
T Consensus 300 ~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 300 NSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred cccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 22 478888888855 2345555555555555544
No 335
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.85 E-value=0.036 Score=60.94 Aligned_cols=271 Identities=15% Similarity=0.182 Sum_probs=152.3
Q ss_pred CCCCCEEEEEEecCCcEEEEEcCC-----ceEEEeeecCCceEEEEE--E-cCCC-CEEEEEECCCeEEEEecC------
Q 005325 71 TPDGEFLIVSGIYPPQVKVYELRQ-----LSLKFERHLDSEIINFEV--L-ADDY-SKLAFLCADRSISLHAKY------ 135 (702)
Q Consensus 71 SpDG~~llatGs~dg~I~vwdl~~-----~~~~~~~h~~~~vv~~~~--l-s~dg-~~Las~s~D~~I~iw~~~------ 135 (702)
+++++-.|++|++.|.++||+... ..+.++.....+|..+.+ | +... ..||. -.-+.+.||.+.
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 345555589999999999999865 234566666666666553 2 2222 33443 345567777552
Q ss_pred --CceEE------EecCCCccceEEecCCC----c-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE
Q 005325 136 --GKHYS------LRIPRMGRDMAYNSWSC----D-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 136 --g~~~~------~~i~~~~~~l~~~~~s~----~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla 202 (702)
|.++. ..++.....+++-+... + +++-+-||.+.+++-+.-.+...+.. .--.-.+++.|....|+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 22333 33344445666666544 2 78889999999999887766655544 22344678888889999
Q ss_pred EEEcCCeEEEEECCCCc-----------------------ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 005325 203 CGGEDGAVECFDMRMRS-----------------------SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKV 259 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~-----------------------~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V 259 (702)
+++.+..|..|....-. +-.++... ..--.|..+.++......++.| . .++
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG----E~~l~i~v~~~~~~~~~IvvLg-e-r~L 264 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG----EQALDIQVVRFSSSESDIVVLG-E-RSL 264 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC----ceeEEEEEEEcCCCCceEEEEe-c-ceE
Confidence 99999999999753110 11111111 1112223333332312233332 2 334
Q ss_pred EEEEcCCCeEEEEeeccCCCCeEEEEEeec-cCC-C--CCeEEEeCCCEEEEEeCCCCceeEEecCCCCce--eEEEEEc
Q 005325 260 LIYDLRSSYPIRVKDHMFDSPIVDIKWHQS-INT-E--RPKLITTDNHIVRIWDPETGESMTSIEPTAGKI--NDVCVFK 333 (702)
Q Consensus 260 ~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~-~~~-~--~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I--~~v~~~p 333 (702)
.+.+- +|.....+...+ .|...+.|.-. ... . ..+++++.++++.||.= .+++........+| .-..|..
T Consensus 265 f~l~~-~G~l~~~krLd~-~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 265 FCLKD-NGSLRFQKRLDY-NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNG 340 (418)
T ss_pred EEEcC-CCeEEEEEecCC-ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCC
Confidence 44443 344444444421 23222222210 111 1 23888889999999863 34444444323333 2222334
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 005325 334 DSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip 353 (702)
-.++|++-+++|.+.+.|+-
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred CCceEEEEcCCCcEEEEEeC
Confidence 57899999999999998863
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.84 E-value=0.01 Score=67.47 Aligned_cols=262 Identities=10% Similarity=0.068 Sum_probs=146.6
Q ss_pred EEEEecCCcEEEEEcCCceEEEeeecCCc-------eEE-EEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCC-
Q 005325 78 IVSGIYPPQVKVYELRQLSLKFERHLDSE-------IIN-FEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRM- 146 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~~~~~h~~~~-------vv~-~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~- 146 (702)
+..++.++.|..+|..+....+....... ++. -..+. ++..++.++.++.|.-++.. |... .......
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~ 142 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQV 142 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCc
Confidence 45567789999999887544333322111 000 00111 22567777788888888776 4322 2222221
Q ss_pred ------ccceEEecCCCcEEEEe---------cCCCEEEEECCCCeEEEEeecCCCC--------------------e-E
Q 005325 147 ------GRDMAYNSWSCDLLCAA---------SSPELYRINLEQGRFLSSLNTQSPA--------------------L-N 190 (702)
Q Consensus 147 ------~~~l~~~~~s~~llv~s---------~d~~V~vwdl~~g~~~~~l~~h~~~--------------------V-~ 190 (702)
.....+. ...+++++ .++.|+.+|..+|+.+..+...... | .
T Consensus 143 ~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 143 PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 0111111 12244543 2567899999999988877553110 1 1
Q ss_pred EEEEcCCCCEEEEEEcCC------------------eEEEEECCCCcceeEEecccCC----CCCCCC-eEEEEEcCCCC
Q 005325 191 VVSRSKLHGLIACGGEDG------------------AVECFDMRMRSSAARINAVAPA----GDADQE-VTALEFDSNGG 247 (702)
Q Consensus 191 ~l~~sp~~~llasgs~DG------------------~V~iWD~~t~~~v~~l~~~~~~----~~~~~~-Vtslafspd~g 247 (702)
..++.+.+.+++.++.++ .|..+|+.+++.+-.+...... .....+ +..+. .-+ |
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~-g 298 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKD-G 298 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccC-C
Confidence 234455567888887665 7999999999988887643110 000011 11111 012 3
Q ss_pred C---EEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE------------------EeCCCEEE
Q 005325 248 F---LMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI------------------TTDNHIVR 306 (702)
Q Consensus 248 ~---~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~------------------ss~Dg~V~ 306 (702)
. .+++++.+|.|..+|.++++++...... ...++..| +.+++ ...++.|.
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-----~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-----GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-----ceEEEccccccccCcccccCCCCCCCceEEE
Confidence 3 6788899999999999999988743321 01112221 11222 12367888
Q ss_pred EEeCCCCceeEEecCCC--------CceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 307 IWDPETGESMTSIEPTA--------GKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~--------~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
-.|+.+|+.+.+..... .+...-...-.+++|++++.++.|+.+...
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 88999998887765521 111111112245778888889988877653
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.00056 Score=75.55 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
...|.|++++|+ ...|+.|+.||.|.+||...+....... ....+.++||| ++..++++++.|.|.+||+.-.
T Consensus 259 ~s~v~~ca~sp~-E~kLvlGC~DgSiiLyD~~~~~t~~~ka---~~~P~~iaWHp---~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 259 PSQVICCARSPS-EDKLVLGCEDGSIILYDTTRGVTLLAKA---EFIPTLIAWHP---DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcceEEecCcc-cceEEEEecCCeEEEEEcCCCeeeeeee---cccceEEEEcC---CCcEEEEEcCCceEEEEEeecC
Confidence 489999999999 9999999999999999998775544432 35678999998 4555666667899999998632
Q ss_pred cee-------------EEe---cCCCCceeEEEEEcCC-------------CEEEEEeCCCcEEEEEc
Q 005325 314 ESM-------------TSI---EPTAGKINDVCVFKDS-------------GLLLLALDCSQIPSYFI 352 (702)
Q Consensus 314 ~~l-------------~~i---~~h~~~I~~v~~~p~~-------------~~l~~a~~d~~I~~~~i 352 (702)
..- -.+ -.+...+-.+.|.+.. ..|+..-+.|.+.+..+
T Consensus 332 pi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~ 399 (545)
T PF11768_consen 332 PIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRF 399 (545)
T ss_pred ccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEE
Confidence 211 111 1234567778888432 24566666666655543
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.78 E-value=0.00085 Score=79.18 Aligned_cols=196 Identities=10% Similarity=0.152 Sum_probs=123.6
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEC----CCCcce---
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDM----RMRSSA--- 221 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~----~t~~~v--- 221 (702)
++.|......++++...|.|.+.|+++....- ...-...|.+++|+|+..+++..+..++|.+-+- -.-+++
T Consensus 73 s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d 151 (1265)
T KOG1920|consen 73 SVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDAD 151 (1265)
T ss_pred EEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccc
Confidence 44555566668888888888888888765432 2223457999999999999999998888765432 111111
Q ss_pred ----------------eEEecccC------C---------CCCCCCeEEEEEcCCCCCEEEE-----EeCCCeEEEEEcC
Q 005325 222 ----------------ARINAVAP------A---------GDADQEVTALEFDSNGGFLMGV-----GSSTGKVLIYDLR 265 (702)
Q Consensus 222 ----------------~~l~~~~~------~---------~~~~~~Vtslafspd~g~~Las-----Gs~DG~V~lwDlr 265 (702)
..|.+... . ......=++|+|--| |.++|+ .+....|+|||-.
T Consensus 152 ~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~~~RkirV~drE 230 (1265)
T KOG1920|consen 152 DERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAVSFVESETGTRKIRVYDRE 230 (1265)
T ss_pred cccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEEEEEeccCCceeEEEeccc
Confidence 11111100 0 001123356999999 999998 3334789999976
Q ss_pred CCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCC---CceeEEecCCCCceeEEEEEcCCCEE
Q 005325 266 SSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPET---GESMTSIEPTAGKINDVCVFKDSGLL 338 (702)
Q Consensus 266 s~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~t---g~~l~~i~~h~~~I~~v~~~p~~~~l 338 (702)
+..-.+... ...-=.+++|-| .+.++++- +|+.|.++..+. |......+.....|..++|+.++.+|
T Consensus 231 -g~Lns~se~-~~~l~~~LsWkP----sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 231 -GALNSTSEP-VEGLQHSLSWKP----SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred -chhhcccCc-ccccccceeecC----CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 332221111 012235789998 55565542 477899998763 33333344434459999999999999
Q ss_pred EE---EeCCCcEEEEEc
Q 005325 339 LL---ALDCSQIPSYFI 352 (702)
Q Consensus 339 ~~---a~~d~~I~~~~i 352 (702)
++ +.....|.+|++
T Consensus 305 Av~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTT 321 (1265)
T ss_pred eeeecccccceEEEEEe
Confidence 98 666667888864
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=1.2e-05 Score=90.82 Aligned_cols=186 Identities=12% Similarity=0.234 Sum_probs=134.1
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC--CeEEEEECCC-CcceeEEe
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED--GAVECFDMRM-RSSAARIN 225 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D--G~V~iWD~~t-~~~v~~l~ 225 (702)
+++|......|++|+..|+|.++|+.+|.......+|.+.|+-|.-+.+|.++++.+.- -...+|++.+ +.+.+++.
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence 67777777779999999999999999999999999999999999988888666655442 2578999874 55555555
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-----eeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-----KDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-----~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
.. .++.|+.. ...-++|+....+.|||+.++.++.. ....| .-+...|+| ...++.
T Consensus 1186 ed----------~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y--~~n~a~FsP----~D~LIl-- 1246 (1516)
T KOG1832|consen 1186 ED----------KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY--SNNLAHFSP----CDTLIL-- 1246 (1516)
T ss_pred cc----------ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhh--hccccccCC----CcceEe--
Confidence 43 68899876 66667888888899999999887652 12222 236778988 555554
Q ss_pred CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE----cCCCC
Q 005325 301 DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF----IPDLG 356 (702)
Q Consensus 301 ~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~----ip~lg 356 (702)
.||. +||++..+.+..+.-.+..+.. .|||.+.-+++-++--.|++|. +|+|.
T Consensus 1247 ndGv--LWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1247 NDGV--LWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINSEIWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred eCce--eeeeccHHHHhhhhhheecccc-cccCCCceEEeechhhhhHHHHHHhcCcccc
Confidence 3443 7999977666555443333333 3899998888877755555543 45554
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.76 E-value=0.025 Score=59.76 Aligned_cols=200 Identities=17% Similarity=0.216 Sum_probs=120.7
Q ss_pred eEEEECCCCCEEEEEEec-CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEEe
Q 005325 66 TKIRETPDGEFLIVSGIY-PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSLR 142 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~-dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~ 142 (702)
+.+++|.||+++++.--. -..|.|-|+......-+-.... +..+ ++.....+.+.|.||++.-..+. |......
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE-EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457899999996554333 3468999998865544444333 2333 22223568899999998877665 5443222
Q ss_pred cCCC--ccc-e----EEecCCCcEEEEecCCCEEEEECCCCe--EEEEeecCC----------CCeEEEEEcCCCCEEEE
Q 005325 143 IPRM--GRD-M----AYNSWSCDLLCAASSPELYRINLEQGR--FLSSLNTQS----------PALNVVSRSKLHGLIAC 203 (702)
Q Consensus 143 i~~~--~~~-l----~~~~~s~~llv~s~d~~V~vwdl~~g~--~~~~l~~h~----------~~V~~l~~sp~~~llas 203 (702)
..-+ ..+ + .+......++..+..|.|+-.|+.... +..++..-+ +.-.-+++++..+.|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1111 111 1 222333457778888888888876553 333333211 23445777776655544
Q ss_pred EEc--------CC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEE
Q 005325 204 GGE--------DG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 204 gs~--------DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~ 272 (702)
--. |+ .|-++|+.+++.+..+... .++.+|+++.+..-+|++. ..++.|.+||..+++.+..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 322 22 3777799999999999987 5788999998844456544 4589999999999998875
Q ss_pred eec
Q 005325 273 KDH 275 (702)
Q Consensus 273 ~~h 275 (702)
...
T Consensus 328 ~~~ 330 (342)
T PF06433_consen 328 IEQ 330 (342)
T ss_dssp E--
T ss_pred hhc
Confidence 444
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0004 Score=77.68 Aligned_cols=117 Identities=26% Similarity=0.318 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
.+.+..++++++..++|.|+..|.|.++-+....+-...........|...|||++|+++ +..|.+|...|+|.+--+.
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEec
Confidence 345666778999999999999999999988764322111111111235789999999999 9999999999999998887
Q ss_pred CCeEE----E-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 266 SSYPI----R-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 266 s~~~l----~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
+.... . +.. ..++|..|.+. ..++++++--..+ ++++.
T Consensus 155 s~~~~~~~~q~il~--~ds~IVQlD~~-----q~~LLVStl~r~~-Lc~tE 197 (726)
T KOG3621|consen 155 SRQAFLSKSQEILS--EDSEIVQLDYL-----QSYLLVSTLTRCI-LCQTE 197 (726)
T ss_pred hhhhhccccceeec--cCcceEEeecc-----cceehHhhhhhhh-eeecc
Confidence 72111 1 111 25688888887 4566666543333 44544
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0039 Score=70.62 Aligned_cols=147 Identities=12% Similarity=-0.061 Sum_probs=97.3
Q ss_pred EcCCCCEEEEE-EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe------------------
Q 005325 194 RSKLHGLIACG-GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS------------------ 254 (702)
Q Consensus 194 ~sp~~~llasg-s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs------------------ 254 (702)
+.|++..+... -..+.|.+.|..+.+.+.++... .....++++|+ |.++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-------gnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-------GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-------CCcccceECCC-CCEEEEeccCcccCcceeeeccccCc
Confidence 34555444322 23567788888877777776665 34456667776 66665553
Q ss_pred ----------------------CCCeEEEEEcCC-----CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEE
Q 005325 255 ----------------------STGKVLIYDLRS-----SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVR 306 (702)
Q Consensus 255 ----------------------~DG~V~lwDlrs-----~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~ 306 (702)
.++.|.++|.++ ...+....- +...+.|.++| ++.++++++ .+.+|.
T Consensus 272 ~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSP---DGkylyVanklS~tVS 346 (635)
T PRK02888 272 WVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSP---DGKYFIANGKLSPTVT 346 (635)
T ss_pred eEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECC---CCCEEEEeCCCCCcEE
Confidence 235688888887 334444433 45668899998 556666666 499999
Q ss_pred EEeCCCCc------------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 307 IWDPETGE------------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 307 IWd~~tg~------------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
|.|+.+.+ .+..++. ...-...+|.+++....+..-|.+|..|.+..
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99998755 3455555 33334567888888777788899999998754
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.65 E-value=0.00092 Score=78.16 Aligned_cols=134 Identities=16% Similarity=0.283 Sum_probs=93.0
Q ss_pred cCCCEEEEECCCCeEEEEeecCCCC-eEEEEEcCC-------CCEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCC
Q 005325 164 SSPELYRINLEQGRFLSSLNTQSPA-LNVVSRSKL-------HGLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDAD 234 (702)
Q Consensus 164 ~d~~V~vwdl~~g~~~~~l~~h~~~-V~~l~~sp~-------~~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~ 234 (702)
..+.||.+|++.|+.+..+..|... |..++ |+ ....++|-.+..|..||+|-.. .+..-..+ .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k--~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK--QYSSK 577 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeecccc--ccccC
Confidence 3567999999999999999998754 55554 43 2455677888999999999543 22111111 11224
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
...+|++-+.+ .+||+|+.+|.|+||| +.+..-. +.+ .+.||..|..+. ++.+|++..+..|-++++
T Consensus 578 ~~Fs~~aTt~~--G~iavgs~~G~IRLyd-~~g~~AKT~lp~--lG~pI~~iDvt~----DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTED--GYIAVGSNKGDIRLYD-RLGKRAKTALPG--LGDPIIGIDVTA----DGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCceEEEecCC--ceEEEEeCCCcEEeec-ccchhhhhcCCC--CCCCeeEEEecC----CCcEEEEeecceEEEEEE
Confidence 67888888866 5899999999999999 3433222 333 378999999985 555555555667778775
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.61 E-value=0.059 Score=56.07 Aligned_cols=228 Identities=14% Similarity=0.161 Sum_probs=125.7
Q ss_pred CCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE----------
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS---------- 140 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~---------- 140 (702)
..++. |+.|+.+| |.+|++.. .......+ ...|..+..+. +.+.|++.+ |+.+.+++.......
T Consensus 5 ~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~~-~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDR-LLVGTEDG-LYVYDLSDPSKPTRILK-LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCE-EEEEECCC-EEEEEecCCccceeEee-cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 45667 78888888 89999833 22222222 12256666554 446666654 599999986621111
Q ss_pred -----EecCCCccceEEe----cCCCcEEEEecCCCEEEEECCC----C-eEEEEeecCCCCeEEEEEcCCCCEEEEEEc
Q 005325 141 -----LRIPRMGRDMAYN----SWSCDLLCAASSPELYRINLEQ----G-RFLSSLNTQSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 141 -----~~i~~~~~~l~~~----~~s~~llv~s~d~~V~vwdl~~----g-~~~~~l~~h~~~V~~l~~sp~~~llasgs~ 206 (702)
..++....+..+. ......++++....|.+|.... . +..+.+... ..+.+++|. ++.|+.|..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC
Confidence 1222222233333 2222255666666766654433 2 345555444 578889988 567888776
Q ss_pred CCeEEEEECCCCcceeEEecccCC------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCC
Q 005325 207 DGAVECFDMRMRSSAARINAVAPA------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFD 278 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~ 278 (702)
+ ...+.|+.++.....+...... .....++..+... + +.+|++- +..-.+.|. .|.+.. .... .
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W--~ 228 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D-NEFLLCY--DNIGVFVNK-NGEPSRKSTIQW--S 228 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C-ceEEEEe--cceEEEEcC-CCCcCcccEEEc--C
Confidence 4 5788999977654444322100 0112345555554 3 4555543 333333443 343332 1111 2
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
..+.++++. .. ++++-.++.|.||++.++++++.+..
T Consensus 229 ~~p~~~~~~-----~p-yli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 229 SAPQSVAYS-----SP-YLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CchhEEEEE-----CC-EEEEECCCEEEEEECcCCcEEEEEEC
Confidence 355677775 23 44445456799999999999999886
No 345
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.59 E-value=0.059 Score=63.04 Aligned_cols=293 Identities=12% Similarity=0.134 Sum_probs=175.3
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
|.++.-..|--|..| |.++..||.+.-|-+.. ..+ .-..+....++.+-.++..+..-++++.|+-..+|...+.
T Consensus 583 PRSIl~~~~e~d~~y-LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k 661 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHY-LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK 661 (1096)
T ss_pred chheeeEEeeccceE-EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc
Confidence 444445555566677 77788899888776654 322 2223556667788888877788888899998888877765
Q ss_pred eEEEecCCC-ccce-EEecC-CCcEEEEecCCCEEEEECCC--CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-----
Q 005325 138 HYSLRIPRM-GRDM-AYNSW-SCDLLCAASSPELYRINLEQ--GRFLSSLNTQSPALNVVSRSKLHGLIACGGED----- 207 (702)
Q Consensus 138 ~~~~~i~~~-~~~l-~~~~~-s~~llv~s~d~~V~vwdl~~--g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D----- 207 (702)
..-..+.-. ...+ .+... .++-++.+..+.+.+.-+.. .-.++++..+. ....+++.+...++++.+.-
T Consensus 662 Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~v~s~r~e~~~ 740 (1096)
T KOG1897|consen 662 LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFGVLSNRIESSA 740 (1096)
T ss_pred EEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCC-ChhheEecccceEEEEEecccccch
Confidence 444332211 1111 12222 22345555556655553332 22334443333 45667777655455544431
Q ss_pred ---------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-C
Q 005325 208 ---------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS----------TGKVLIYDLRS-S 267 (702)
Q Consensus 208 ---------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~----------DG~V~lwDlrs-~ 267 (702)
..++++|..+.+.++...... ......|.++.|..|.+.++++|+. .|.|.||.... +
T Consensus 741 ~~~~ee~~~s~l~vlD~nTf~vl~~hef~~--~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 741 EYYGEEYEVSFLRVLDQNTFEVLSSHEFER--NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred hhcCCcceEEEEEEecCCceeEEeeccccc--cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 235666666655443332220 0112455566688775678888874 58888888877 3
Q ss_pred eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 268 YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 268 ~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
+...+..+.-.+.+.++.-. .+ .++++-...|++|+..+.+.+..-..|..++..+...-.+..+++|.--+.+
T Consensus 819 ~L~~v~e~~v~Gav~aL~~f-----ng-kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 819 SLELVAETVVKGAVYALVEF-----NG-KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred ceeeeeeeeeccceeehhhh-----CC-eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence 33334444334556666543 33 4455556789999999987777777778889888888889999999887777
Q ss_pred EEE-EcCCCC--------CCCCccCc
Q 005325 348 PSY-FIPDLG--------PTPKWCSP 364 (702)
Q Consensus 348 ~~~-~ip~lg--------~ap~Wcsf 364 (702)
.+. |.+.-| --|.|..-
T Consensus 893 tll~y~~~eg~f~evArD~~p~Wmta 918 (1096)
T KOG1897|consen 893 TLLQYKGDEGNFEEVARDYNPNWMTA 918 (1096)
T ss_pred EEEEEeccCCceEEeehhhCccceee
Confidence 654 444332 25788543
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00025 Score=78.38 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeE-EEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVT-ALEFDSNGGFLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt-slafspd~g~~LasGs~DG~V~lwDlrs 266 (702)
.|.-+.|+|.-.+||.++.+|.|.+.-+. .+.+.++..+ +..++ +++|.|| |..||+|-.||+|+|.|+.+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p------~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP------GENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC------CCccceeeeecCC-CCEEEEEecCCeEEEEEccC
Confidence 57788999999999999999999999888 7888999877 56676 9999999 99999999999999999999
Q ss_pred CeEEEEeeccCCCCeEEEEEee
Q 005325 267 SYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 267 ~~~l~~~~h~~~~~I~sl~fsp 288 (702)
+..+.-.......+|+++.|.|
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 8877643333467899999975
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.57 E-value=0.035 Score=56.84 Aligned_cols=196 Identities=12% Similarity=0.232 Sum_probs=110.8
Q ss_pred cceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc------
Q 005325 148 RDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQS-PALNVVSRSKLHGLIACGGEDGAVECFDMRMRS------ 219 (702)
Q Consensus 148 ~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~-~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~------ 219 (702)
..++|++.+..|++... .+.|+.+++ +|+.++.+.... +..-.|++..++.++++--.++.+.++++....
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~ 103 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRA 103 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EE
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchh
Confidence 37888887777665554 456778887 578888775543 457788887666555554448999999984322
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---CeEEE---Eeecc----CCCCeEEEEEeec
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS---SYPIR---VKDHM----FDSPIVDIKWHQS 289 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs---~~~l~---~~~h~----~~~~I~sl~fsp~ 289 (702)
.+..+..... ..++..+-.|+|+|. +..|+++-...-..||.+.. ...+. ...+. .-..+.+++++|
T Consensus 104 ~~~~~~l~~~-~~~N~G~EGla~D~~-~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p- 180 (248)
T PF06977_consen 104 DVQKISLGFP-NKGNKGFEGLAYDPK-TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP- 180 (248)
T ss_dssp EEEEEE---S----SS--EEEEEETT-TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET-
T ss_pred hceEEecccc-cCCCcceEEEEEcCC-CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC-
Confidence 1222332211 234567999999998 77777777777777887764 22222 11111 234578999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC---------CceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPTA---------GKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~---------~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
.++..++++..+..|.++| .+|+++..+.-.. ..--.|+|.+++. |++.++-..+++|
T Consensus 181 -~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 181 -RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred -CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 3455566666799999999 6688777654422 1345689998764 6666675554443
No 348
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.55 E-value=0.16 Score=53.52 Aligned_cols=269 Identities=11% Similarity=0.121 Sum_probs=125.3
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceE-EEeeecCCc---eEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSL-KFERHLDSE---IINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~-~~~~h~~~~---vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
+........|.|. |.+.-+++|.+ +. |+...+ ..- ......+.+ ....+.+..+ ..++ ++..+ +.++
T Consensus 13 l~t~~~l~dV~F~-d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~ 85 (302)
T PF14870_consen 13 LPTDKPLLDVAFV-DPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLH 85 (302)
T ss_dssp -S-SS-EEEEEES-SSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEE
T ss_pred cCCCCceEEEEEe-cCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEE
Confidence 4455678889998 44444677765 33 333333 100 111111111 1222333332 3333 44445 4455
Q ss_pred ecC-Cc-eEEEecC----CCccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 005325 133 AKY-GK-HYSLRIP----RMGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSSLNTQSPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 133 ~~~-g~-~~~~~i~----~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h~~~V~~l~~sp~~~llasgs 205 (702)
... |. ...+.++ .....+..... ..+++++..+.||.=. ..|+ -......-...++.+..++++.++++++
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 554 33 3333222 22122333322 2455556666665532 2222 2222333446788888999999999987
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEEE--Eeec-cCCCCe
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPIR--VKDH-MFDSPI 281 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~l~--~~~h-~~~~~I 281 (702)
.-..+.-||.-...-...-... ...|.+|.|+|+ +.+.++ +..|.|++=+... ..... +.+. ..+..|
T Consensus 164 ~G~~~~s~~~G~~~w~~~~r~~------~~riq~~gf~~~-~~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ 235 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTWQPHNRNS------SRRIQSMGFSPD-GNLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGI 235 (302)
T ss_dssp TSSEEEEE-TT-SS-EEEE--S------SS-EEEEEE-TT-S-EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-E
T ss_pred cccEEEEecCCCccceEEccCc------cceehhceecCC-CCEEEE-eCCcEEEEccCCCCccccccccCCcccCceee
Confidence 7666678887643221111212 478999999999 665554 4888888877222 22211 1111 124458
Q ss_pred EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 282 VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP---TAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
..++|.| ...+.+++..++| +...+.|+....... -.+.+..|.|.+. ..-++.+.+|.|.-|
T Consensus 236 ld~a~~~----~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 236 LDLAYRP----PNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEESS----SS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET-TEEEEE-STTEEEEE
T ss_pred EEEEecC----CCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC-CceEEECCCcEEEEe
Confidence 9999986 6777777777765 556677887776542 2457888888765 456666778877765
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.51 E-value=2.9e-05 Score=85.43 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=116.9
Q ss_pred cEEEEecCCCEEEEECCCCeEE--EEeecCCCCeEEEEEcCCC-CEEEEEEc----CCeEEEEECCCC--cceeEEeccc
Q 005325 158 DLLCAASSPELYRINLEQGRFL--SSLNTQSPALNVVSRSKLH-GLIACGGE----DGAVECFDMRMR--SSAARINAVA 228 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~--~~l~~h~~~V~~l~~sp~~-~llasgs~----DG~V~iWD~~t~--~~v~~l~~~~ 228 (702)
-+.+|..+|.|.+..+...... .....|....++++|++-. +.||.|-. |..+.|||+.++ .+........
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~ 151 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS 151 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence 3677778888888766543322 2334677889999999864 67777743 678999999876 2222111110
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
.......++||..+ ..++.+|.....|+++|+|........-. ...+..+...| -...++++..|+.|.+|
T Consensus 152 ---~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp---~~~nY~cs~~dg~iAiw 222 (783)
T KOG1008|consen 152 ---STLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDP---FSPNYFCSNSDGDIAIW 222 (783)
T ss_pred ---ccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecC---CCCCceeccccCceeec
Confidence 11345668999977 88899999999999999995332110000 11234444554 13356666679999999
Q ss_pred eC-CC-CceeEEecCCCC----ceeEEEEEc-CCCEEEEEeC-CCcEEEEEcCC
Q 005325 309 DP-ET-GESMTSIEPTAG----KINDVCVFK-DSGLLLLALD-CSQIPSYFIPD 354 (702)
Q Consensus 309 d~-~t-g~~l~~i~~h~~----~I~~v~~~p-~~~~l~~a~~-d~~I~~~~ip~ 354 (702)
|. .. ..++..+..... .+..++|+| ..+++++... .+.|..|.|-.
T Consensus 223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 93 33 234433332222 488999999 4456666554 44566665543
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.50 E-value=0.18 Score=54.29 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=129.3
Q ss_pred EECCCCCEEEEEEecCCc--EEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc--eEEEec
Q 005325 69 RETPDGEFLIVSGIYPPQ--VKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK--HYSLRI 143 (702)
Q Consensus 69 ~~SpDG~~llatGs~dg~--I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~--~~~~~i 143 (702)
+|++||+.+|.++..++. +.+.|+.+..+ .+...... ..-..+++++.+.++.....+.|.--++... .....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 578999998888887775 55556666333 22222111 1113456677788877777777766676632 233444
Q ss_pred CCCcc-ceEEe-cCCCcEEEEec-----------------------CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC
Q 005325 144 PRMGR-DMAYN-SWSCDLLCAAS-----------------------SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 144 ~~~~~-~l~~~-~~s~~llv~s~-----------------------d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
|..-. ...+. ...+.++++.. ...|+..|+.+|+....+. ....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 54333 23333 22333433321 1236778999988755554 34478899999987
Q ss_pred -CEEEEEEc---CC-eEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-----CCCeEEEEEcCCC
Q 005325 199 -GLIACGGE---DG-AVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-----STGKVLIYDLRSS 267 (702)
Q Consensus 199 -~llasgs~---DG-~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-----~DG~V~lwDlrs~ 267 (702)
.+|+.|.+ +. .-+||-+++ +..+..+..+ .....++.=-|.|+ |..|.--+ .+..|.-+|+.++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~gHEfw~~D-G~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVGHEFWVPD-GSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-TT-SS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccccccccCC-CCEEEEEeecCCCCceEEEeeCCCCC
Confidence 56666654 22 136776653 2333333322 11356677789999 77665322 2446777888887
Q ss_pred eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CC----------------CEEEEEeCCCCceeEEecCCC-------
Q 005325 268 YPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DN----------------HIVRIWDPETGESMTSIEPTA------- 323 (702)
Q Consensus 268 ~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~D----------------g~V~IWd~~tg~~l~~i~~h~------- 323 (702)
....+... | .+..|.. +.++.++++- .| -.|.|+++..+.... +..|.
T Consensus 275 ~~~~~~~~----p-~~~H~~s--s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~ 346 (386)
T PF14583_consen 275 ERRRLMEM----P-WCSHFMS--SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLD 346 (386)
T ss_dssp -EEEEEEE------SEEEEEE---TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BT
T ss_pred CceEEEeC----C-ceeeeEE--cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeec
Confidence 65443222 1 2444443 2367777652 22 256678887665421 11121
Q ss_pred --C--ceeEEEEEcCCCE-EEEEeCCCcEEEEEc
Q 005325 324 --G--KINDVCVFKDSGL-LLLALDCSQIPSYFI 352 (702)
Q Consensus 324 --~--~I~~v~~~p~~~~-l~~a~~d~~I~~~~i 352 (702)
. .=..+.|+||+.. |+.++..|...+|-+
T Consensus 347 ~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 347 GDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1 1134789998875 555666777777754
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.22 Score=54.65 Aligned_cols=262 Identities=10% Similarity=0.046 Sum_probs=160.9
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCC--ceEE
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYG--KHYS 140 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g--~~~~ 140 (702)
....+.+.|+|..+.++-.....+.+.+................-....+++++..+ ++...+..|.+.+... ....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 345677888886656655554455554444211111111111122344566666644 5555568888887552 2233
Q ss_pred EecCCCccceEEecCCCcEEEEec---CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECC
Q 005325 141 LRIPRMGRDMAYNSWSCDLLCAAS---SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDMR 216 (702)
Q Consensus 141 ~~i~~~~~~l~~~~~s~~llv~s~---d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~ 216 (702)
.........+.+.+....++++.. ++.+.++|..++..+........+ ..+++.|++..++... .++.|.+.|..
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 333445568888888888888887 577999999999888875554434 8899999998555544 78999999977
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCC
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST---GKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D---G~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~ 292 (702)
+..... ...............+.++|+ |..+.+.... +.|.+.|..++..... ..-... ....+.++| .
T Consensus 191 ~~~v~~--~~~~~~~~~~~~P~~i~v~~~-g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p---~ 263 (381)
T COG3391 191 GNSVVR--GSVGSLVGVGTGPAGIAVDPD-GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP---A 263 (381)
T ss_pred Ccceec--cccccccccCCCCceEEECCC-CCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC---C
Confidence 654442 110000011245567899999 7765554333 6999999998876653 211112 345678887 3
Q ss_pred CCCeEEE-eCCCEEEEEeCCCCceeEEecCCCC---ceeEEEEEc
Q 005325 293 ERPKLIT-TDNHIVRIWDPETGESMTSIEPTAG---KINDVCVFK 333 (702)
Q Consensus 293 ~~~ll~s-s~Dg~V~IWd~~tg~~l~~i~~h~~---~I~~v~~~p 333 (702)
+..+.+. +..+.|.+-|..+......+..... .+..+++.+
T Consensus 264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 4433333 3468899999998887777655332 244555555
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.11 Score=57.67 Aligned_cols=222 Identities=14% Similarity=0.151 Sum_probs=111.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee---cCCceEEEE----EEcCCCCEEEEEECCCeEEEEecC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH---LDSEIINFE----VLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h---~~~~vv~~~----~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
+.+.++.|+.+... ++-..+|.+++||+.... .|.-. ....+..+. ++..+| ++....++.+.+.+-.
T Consensus 81 ~~iv~~~wt~~e~L--vvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL--VVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeE--EEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCc
Confidence 67889999997766 344579999999986533 22111 011222221 122232 4445555555544332
Q ss_pred CceEEE----ecCCCccceE----------EecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE
Q 005325 136 GKHYSL----RIPRMGRDMA----------YNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI 201 (702)
Q Consensus 136 g~~~~~----~i~~~~~~l~----------~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll 201 (702)
...... .+|....... +.......+....++.+++.+...... +. ..+++..+++||++++|
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFI 231 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEE
Confidence 211111 1122111110 111111122223333344333221101 11 22579999999999999
Q ss_pred EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCe
Q 005325 202 ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPI 281 (702)
Q Consensus 202 asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I 281 (702)
|.-+.+|.+.+....-.+....+.... ......|.|+-+ |..+..|. ..+.+.+. ++..
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~~-----~~~p~~~~WCG~----------dav~l~~~----~~l~lvg~-~~~~- 290 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTDS-----KSPPKQMAWCGN----------DAVVLSWE----DELLLVGP-DGDS- 290 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecCc-----CCCCcEEEEECC----------CcEEEEeC----CEEEEECC-CCCc-
Confidence 999999999999877666666665541 345677888733 22233331 12222222 1222
Q ss_pred EEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecC
Q 005325 282 VDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
+.|.- +...++.. -|| |+|......+.+..++.
T Consensus 291 --~~~~~----~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 291 --ISFWY----DGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred --eEEec----cCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 23331 22244444 455 88887766666666655
No 353
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.16 Score=53.93 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=122.0
Q ss_pred CCCeEEEEecC-CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-----CCCCeEEEEEcCCC
Q 005325 125 ADRSISLHAKY-GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-----QSPALNVVSRSKLH 198 (702)
Q Consensus 125 ~D~~I~iw~~~-g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-----h~~~V~~l~~sp~~ 198 (702)
..+.|.-|+.. |....+..|....++........|+++. ..+++++++++..+..+.. .....|.+.+.|+|
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG 122 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG 122 (307)
T ss_pred CCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC
Confidence 35566667664 6677777776665555544444444443 4556677776665333321 11357788899998
Q ss_pred CEEEEEEc-----------CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCC
Q 005325 199 GLIACGGE-----------DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRS 266 (702)
Q Consensus 199 ~llasgs~-----------DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs 266 (702)
.+.++... -|.|+.+|+ .+..+..+..+ -..-+.|+|||| +..|....+ .+.|.-|++..
T Consensus 123 ~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~------~~~~NGla~SpD-g~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 123 RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD------LTIPNGLAFSPD-GKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc------EEecCceEECCC-CCEEEEEeCCCCeEEEEecCc
Confidence 77665443 144555555 34444444432 245578999999 877666554 58888888752
Q ss_pred ------Ce-EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC-EEEEEeCCCCceeEEecCCCCceeEEEEEc-CCC
Q 005325 267 ------SY-PIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNH-IVRIWDPETGESMTSIEPTAGKINDVCVFK-DSG 336 (702)
Q Consensus 267 ------~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg-~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~ 336 (702)
+. .........+.| -.++... ++.+-+++ ..+ .|.+|+.. |+++..+......++++||-- +..
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~P-DG~~vDa----dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~ 268 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLP-DGMAVDA----DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN 268 (307)
T ss_pred ccCccCCcceEEEccCCCCCC-CceEEeC----CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence 11 111222212222 3455542 44555344 443 89999998 999999988557888888865 455
Q ss_pred EEEEEeCCC
Q 005325 337 LLLLALDCS 345 (702)
Q Consensus 337 ~l~~a~~d~ 345 (702)
.|++.+...
T Consensus 269 ~L~iTs~~~ 277 (307)
T COG3386 269 TLYITSARS 277 (307)
T ss_pred EEEEEecCC
Confidence 555555544
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0035 Score=68.25 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=98.9
Q ss_pred eEEecCCCcE-EEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEECCCCcc-
Q 005325 150 MAYNSWSCDL-LCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-------LIACGGEDGAVECFDMRMRSS- 220 (702)
Q Consensus 150 l~~~~~s~~l-lv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-------llasgs~DG~V~iWD~~t~~~- 220 (702)
|.+...++-+ ..+.....+|-+|++.|+.+..+..|.. |+-+.+.|+.. .-+.|-.|..|.-||+|....
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 3333333333 3344556799999999999999999886 88888988761 234566789999999994332
Q ss_pred -eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 221 -AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 221 -v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
+.....+. ........|.+-..+ .+|++|+.+|.|+|||- .+.... +.+. +.+|+.|..+. ++.+|
T Consensus 418 kl~~~q~kq--y~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~AKTAlPgL--G~~I~hVdvta----dGKwi 486 (644)
T KOG2395|consen 418 KLAVVQSKQ--YSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRRAKTALPGL--GDAIKHVDVTA----DGKWI 486 (644)
T ss_pred eeeeeeccc--cccccccceeeecCC--ceEEEeecCCcEEeehh-hhhhhhhccccc--CCceeeEEeec----cCcEE
Confidence 22222220 011245566666644 58999999999999996 443222 4444 78999999884 55555
Q ss_pred EEeCCCEEEEEeC
Q 005325 298 ITTDNHIVRIWDP 310 (702)
Q Consensus 298 ~ss~Dg~V~IWd~ 310 (702)
++.-+..+-+-++
T Consensus 487 l~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 487 LATCKTYLLLIDT 499 (644)
T ss_pred EEecccEEEEEEE
Confidence 5555566666665
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.07 Score=54.34 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=90.1
Q ss_pred eEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEEEecCCCccceEEecCCCc-EEEEecCCC-EEEEECCCCeEEEEee
Q 005325 107 IINFEVLADDYSKL-AFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCD-LLCAASSPE-LYRINLEQGRFLSSLN 183 (702)
Q Consensus 107 vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~-V~vwdl~~g~~~~~l~ 183 (702)
+...++...|+++- ++.+.+|.|. ..+.+|.-+..|+++|.... ++.+-.-|+ .+++|..+.+...++.
T Consensus 37 vfasaf~~~dgs~g~a~~~eaGk~v--------~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~ 108 (366)
T COG3490 37 VFASAFDARDGSFGAATLSEAGKIV--------FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV 108 (366)
T ss_pred hheeeeeccCCceeEEEEccCCcee--------eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe
Confidence 34445555666554 4555566553 36677888889999998887 455555554 6788998887766654
Q ss_pred cCCC--CeEEEEEcCCCCEEEEEEcC-----CeEEEEECCCC-cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 184 TQSP--ALNVVSRSKLHGLIACGGED-----GAVECFDMRMR-SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 184 ~h~~--~V~~l~~sp~~~llasgs~D-----G~V~iWD~~t~-~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs 254 (702)
...+ ..-.=.|+|+|.+|...-.| |.|-|||.+.+ +.+..+..+ .-....+.|.+| |..|++..
T Consensus 109 s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~------GiGpHev~lm~D-Grtlvvan 180 (366)
T COG3490 109 SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH------GIGPHEVTLMAD-GRTLVVAN 180 (366)
T ss_pred cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC------CcCcceeEEecC-CcEEEEeC
Confidence 4322 12233589999888875443 78999999853 566677666 566678889999 88888754
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.30 E-value=0.1 Score=53.42 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=112.0
Q ss_pred cccccceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc---eEEEeeecCCceEEEEEEcCCCCEEEE
Q 005325 47 IDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL---SLKFERHLDSEIINFEVLADDYSKLAF 122 (702)
Q Consensus 47 ~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~---~~~~~~h~~~~vv~~~~ls~dg~~Las 122 (702)
++|+-.|+ -+.+ .....+..|+|.|+...|+|+...++.|..+++... .+.+.+..+. -.+.++. ++.++++
T Consensus 6 ~~y~~~i~-~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~--EgI~y~g-~~~~vl~ 81 (248)
T PF06977_consen 6 PDYRVVIE-AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDY--EGITYLG-NGRYVLS 81 (248)
T ss_dssp TT-EEEEE-EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSE--EEEEE-S-TTEEEEE
T ss_pred CCcEEEEe-eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCc--eeEEEEC-CCEEEEE
Confidence 34444555 2222 334458999999998887888888899888887642 2233333233 3444443 3344443
Q ss_pred EECCCeEEEEecCC--ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCE
Q 005325 123 LCADRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGL 200 (702)
Q Consensus 123 ~s~D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~l 200 (702)
--.++.+.+..... ..... ..+..+.+. ....+...+-.|+|+|.++.
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~------------------------~~~~~~~l~------~~~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDR------------------------ADVQKISLG------FPNKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp ETTTTEEEEEEE----TT--E------------------------EEEEEEE---------S---SS--EEEEEETTTTE
T ss_pred EcCCCcEEEEEEeccccccch------------------------hhceEEecc------cccCCCcceEEEEEcCCCCE
Confidence 33466665544320 00000 000001110 01123446889999999877
Q ss_pred EEEEEcCCeEEEEECCC---CcceeEEecc--cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 005325 201 IACGGEDGAVECFDMRM---RSSAARINAV--APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t---~~~v~~l~~~--~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h 275 (702)
|+++-+..-..||.+.. ...+...... .........+.+++++|..+.+++....+..|.++| .+++++....-
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L 210 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSL 210 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEe
Confidence 77777776666666653 2222111111 001112356899999998778888888899999999 77776653222
Q ss_pred c---CC-----CCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 276 M---FD-----SPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 276 ~---~~-----~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
. ++ ..--.|+|.| ++.+.+++.-+...+|
T Consensus 211 ~~g~~gl~~~~~QpEGIa~d~----~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 211 DRGFHGLSKDIPQPEGIAFDP----DGNLYIVSEPNLFYRF 247 (248)
T ss_dssp STTGGG-SS---SEEEEEE-T----T--EEEEETTTEEEEE
T ss_pred CCcccCcccccCCccEEEECC----CCCEEEEcCCceEEEe
Confidence 1 01 1357899986 6788888877666654
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.30 E-value=0.048 Score=58.36 Aligned_cols=173 Identities=12% Similarity=0.092 Sum_probs=108.4
Q ss_pred CEEEEECCCCeEEEEeecCCC-CeEEEE---EcC----CCCEEEEEEc---------C-CeEEEEECCCC-----c--ce
Q 005325 167 ELYRINLEQGRFLSSLNTQSP-ALNVVS---RSK----LHGLIACGGE---------D-GAVECFDMRMR-----S--SA 221 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~-~V~~l~---~sp----~~~llasgs~---------D-G~V~iWD~~t~-----~--~v 221 (702)
.|.++|..+...+.++..... .+++++ +.. ...+|++|+. . |.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 467778877777766654432 345444 333 2478888875 2 89999999974 1 22
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
..... .++|++|+-- + +. |+++ ..+.|.+|++...+ .+....+.....|+++... ++.++++-
T Consensus 83 ~~~~~-------~g~V~ai~~~-~-~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-----~~~I~vgD 146 (321)
T PF03178_consen 83 HSTEV-------KGPVTAICSF-N-GR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-----KNYILVGD 146 (321)
T ss_dssp EEEEE-------SS-EEEEEEE-T-TE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-----TTEEEEEE
T ss_pred EEEee-------cCcceEhhhh-C-CE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-----ccEEEEEE
Confidence 22333 4889999887 2 44 4443 35899999999877 5543322224578888876 45566665
Q ss_pred CCCEEEEEeCCC-CceeEEe--cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 301 DNHIVRIWDPET-GESMTSI--EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 301 ~Dg~V~IWd~~t-g~~l~~i--~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.-..|.++.... +..+..+ ......+.++++.++...++++..++.+.++..+..
T Consensus 147 ~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 147 AMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp SSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 556666664332 2222222 222567889999866678999999999999988754
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.02 Score=50.41 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=71.4
Q ss_pred eEEEEEcC---CC-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 189 LNVVSRSK---LH-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 189 V~~l~~sp---~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
|+++++.. ++ +-|++||.|..|++|+-. ..+..+... ..|++|+-... ..|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-------~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-------DKVTSLCSLGG--GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-------cceEEEEEcCC--CEEEEEecCCEEEEEeC
Confidence 55666543 33 789999999999999865 677777776 78999998855 68999999999999985
Q ss_pred CCCeEEEEeeccCCCCeEEEEEeeccCCCC-CeEEEeCCCEEE
Q 005325 265 RSSYPIRVKDHMFDSPIVDIKWHQSINTER-PKLITTDNHIVR 306 (702)
Q Consensus 265 rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss~Dg~V~ 306 (702)
+.+...++.. ..++++++.....++. .++++-.+|.|-
T Consensus 71 -~~RlWRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 -SQRLWRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -cceeeeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333334433 3467777764222222 355555677664
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.00084 Score=76.09 Aligned_cols=128 Identities=9% Similarity=0.104 Sum_probs=86.4
Q ss_pred EEecCCCcEEEEe----cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEec
Q 005325 151 AYNSWSCDLLCAA----SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINA 226 (702)
Q Consensus 151 ~~~~~s~~llv~s----~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~ 226 (702)
.|+|..+-+++++ ..|.|.+| +++|.+.+...- .-.++++||+|..-+|++|-.-|.+.+|...+.+.......
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 4444445454444 34556666 245543322111 11356799999999999999999999999887654433333
Q ss_pred ccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEE--EEeeccCCCCeEEEEEe
Q 005325 227 VAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPI--RVKDHMFDSPIVDIKWH 287 (702)
Q Consensus 227 ~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~l--~~~~h~~~~~I~sl~fs 287 (702)
| ..+|+.+.|||+ |..|+++..-|.|.+|.+.. ++.. .+..|.++..++-++|-
T Consensus 100 h------~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfR 156 (1416)
T KOG3617|consen 100 H------PAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFR 156 (1416)
T ss_pred C------CCCceeEEecCC-CCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEe
Confidence 3 799999999999 99999999999999997763 2211 14455555666666664
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.65 Score=53.26 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=88.5
Q ss_pred CEEEEECCCCeEEEEeecCCCC---------eEEEEEcCCCC---EEEEEEcCCeEEEEECCCCcceeEEec--------
Q 005325 167 ELYRINLEQGRFLSSLNTQSPA---------LNVVSRSKLHG---LIACGGEDGAVECFDMRMRSSAARINA-------- 226 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~~---------V~~l~~sp~~~---llasgs~DG~V~iWD~~t~~~v~~l~~-------- 226 (702)
.|.-+|++||+....|+..... ..-+.+..++. +++.++.+|.+.+.|.++++.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5777899999998888763221 22233334554 888999999999999999987622100
Q ss_pred ccC------CC----------CCCC-----------CeEEEEEcCCCCCEEEEEeCC-----------------------
Q 005325 227 VAP------AG----------DADQ-----------EVTALEFDSNGGFLMGVGSST----------------------- 256 (702)
Q Consensus 227 ~~~------~~----------~~~~-----------~Vtslafspd~g~~LasGs~D----------------------- 256 (702)
... .. .... .=..++++|. ..++.+...+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~-~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPK-TGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGL 430 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCC-CCEEEEecccccccccccccccCCCCceecccc
Confidence 000 00 0000 0012566776 4444433222
Q ss_pred ----------CeEEEEEcCCCeEEEEeeccCCCCe-EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC
Q 005325 257 ----------GKVLIYDLRSSYPIRVKDHMFDSPI-VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 257 ----------G~V~lwDlrs~~~l~~~~h~~~~~I-~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
|.|.-+|+.+++.+..... ..+. .+.... .++.++++..++.++.+|..||+.+..+..
T Consensus 431 ~~~p~~~~~~g~l~AiD~~tGk~~W~~~~--~~p~~~~~l~t----~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 431 TIKPPPDDHMGSLIAWDPITGKIVWEHKE--DFPLWGGVLAT----AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ccCCCCCCCceeEEEEeCCCCceeeEecC--CCCCCCcceEE----CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 4577788888887764433 2221 111111 134444545699999999999999998877
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.012 Score=65.13 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEE--EEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVK--VYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~--vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
++......+|||||++|+.+...++... ++|+....+.-.-+ ...+...-.++|||++|++.+..+-
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G---------- 304 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGG---------- 304 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCC----------
Confidence 5566667889999999888888887654 55655533221112 1222335568899999988754220
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-Ce--EEEEEC
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED-GA--VECFDM 215 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D-G~--V~iWD~ 215 (702)
...|+++|++.+.. ..+..+...-.+-.|+|+|.+|+..+.. |. |.+.|+
T Consensus 305 --------------------------~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 305 --------------------------RPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred --------------------------CcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 11456666666544 2333333333367799999888887753 44 677777
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV 252 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las 252 (702)
.++..+..+... .....-+|.|+ |..+..
T Consensus 358 ~~~~~~~~lt~~-------~~~e~ps~~~n-g~~i~~ 386 (425)
T COG0823 358 ASGGKIRILTST-------YLNESPSWAPN-GRMIMF 386 (425)
T ss_pred CCCCcEEEcccc-------ccCCCCCcCCC-CceEEE
Confidence 666544444443 34455667777 665553
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.17 E-value=0.0012 Score=44.51 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=34.5
Q ss_pred CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 176 GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 176 g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
+.++..+..|...|+++.|++.+.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778888999999999999999999999999996
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.12 E-value=0.057 Score=58.63 Aligned_cols=274 Identities=11% Similarity=0.110 Sum_probs=125.4
Q ss_pred CCCCCEEEEEE--------ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 71 TPDGEFLIVSG--------IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 71 SpDG~~llatG--------s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
|||++++|+.- +..+.+.|||+.+....-.... ........+||+|..++... ++.|.+++..+. ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 78999966633 2346789999998554333222 22356777899999999887 467888876533 3333
Q ss_pred cCCCccceEEecCCCcEEEE--ecCCCEEEEECCCCeEEEEeecCCCCeEEE---EEcCCCC---EEE------EEEcCC
Q 005325 143 IPRMGRDMAYNSWSCDLLCA--ASSPELYRINLEQGRFLSSLNTQSPALNVV---SRSKLHG---LIA------CGGEDG 208 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~--s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l---~~sp~~~---lla------sgs~DG 208 (702)
+...+....++....-++-- -.......|.... +.+..+......|..+ .+.+.+. .+. .|..+-
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred eccccceeEEcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 33322211111110000000 0001122233322 2222222222212111 1222211 111 122223
Q ss_pred --eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC--C---CeEEEEEcCCCeEEE-EeeccCCCC
Q 005325 209 --AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS--T---GKVLIYDLRSSYPIR-VKDHMFDSP 280 (702)
Q Consensus 209 --~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~--D---G~V~lwDlrs~~~l~-~~~h~~~~~ 280 (702)
.|.|+|+.+++.. .+............+..+.|.++ +..|++... + -.+.++|..++.... .... ....
T Consensus 157 ~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~W 233 (353)
T PF00930_consen 157 RVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGW 233 (353)
T ss_dssp EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSS
T ss_pred ceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcc
Confidence 3556788776643 22211000112567899999999 774444332 2 247777887765433 2111 1222
Q ss_pred e---EEEEEe-eccCCCCCeEEEe-CCCE--EEEEeCCCCceeEEecCCCCceeE-EEEEcCCCEE-EEEeCC--CcEEE
Q 005325 281 I---VDIKWH-QSINTERPKLITT-DNHI--VRIWDPETGESMTSIEPTAGKIND-VCVFKDSGLL-LLALDC--SQIPS 349 (702)
Q Consensus 281 I---~sl~fs-p~~~~~~~ll~ss-~Dg~--V~IWd~~tg~~l~~i~~h~~~I~~-v~~~p~~~~l-~~a~~d--~~I~~ 349 (702)
| ..+.|. + ++..++..+ .+|. |.+.+...+. ...+....-.|+. +.|.++++.| ++|+.+ ..-++
T Consensus 234 v~~~~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 234 VDVYDPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp SSSSSEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred eeeecccccccC---CCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence 2 345554 4 344455444 4554 5555555554 4456654667766 5566766644 455542 35666
Q ss_pred EEcCCC
Q 005325 350 YFIPDL 355 (702)
Q Consensus 350 ~~ip~l 355 (702)
|.+.--
T Consensus 310 Y~v~~~ 315 (353)
T PF00930_consen 310 YRVSLD 315 (353)
T ss_dssp EEEETT
T ss_pred EEEEeC
Confidence 666543
No 364
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.021 Score=63.34 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=55.9
Q ss_pred CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CCe--EEEEECCCCcceeEEecccCCCCCCCCeEEEEEc
Q 005325 167 ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DGA--VECFDMRMRSSAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG~--V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.||++|+..+...+ +....+.-..=.|+|+|..|+..+. .|. |.+.|+..... ..+... ...-.+-.|+
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~------~~~~~~p~~S 334 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS------GGGNSNPVWS 334 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc------CCCCcCccCC
Confidence 46778887776333 3322222224468999988877765 444 55556655443 444433 1222278899
Q ss_pred CCCCCEEEEEeC-CCe--EEEEEcCCCe
Q 005325 244 SNGGFLMGVGSS-TGK--VLIYDLRSSY 268 (702)
Q Consensus 244 pd~g~~LasGs~-DG~--V~lwDlrs~~ 268 (702)
|+ |.+|+..+. +|. |.++|+.++.
T Consensus 335 pd-G~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 335 PD-GDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CC-CCEEEEEeccCCceeeEEeccCCCC
Confidence 99 988887664 354 6777776655
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.22 Score=52.82 Aligned_cols=207 Identities=11% Similarity=0.059 Sum_probs=117.3
Q ss_pred EEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EEEecCC
Q 005325 68 IRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKH-YSLRIPR 145 (702)
Q Consensus 68 i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~~~i~~ 145 (702)
..|.++...|+.+....+.|.-|+..+........ ...+.....+... ..|+++... +.+++.. +.. ..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~-g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAG-GRLIACEHG--VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCC-CeEEEEccc--cEEEeccCCceeEEecccc
Confidence 35678888778888888999999987643322222 1222444444443 444444332 3333332 222 2211111
Q ss_pred C------ccceEEecCCCcEEEEecC------------CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-
Q 005325 146 M------GRDMAYNSWSCDLLCAASS------------PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE- 206 (702)
Q Consensus 146 ~------~~~l~~~~~s~~llv~s~d------------~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~- 206 (702)
. ..+....+. ..++++... +.||+++. .+..++.+..|-..-|.|+|||++..|...-.
T Consensus 106 ~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 113333333 334444443 34888887 56666666666667889999999966665544
Q ss_pred CCeEEEEECCC--Cc---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCCeEEEEeeccCCCC
Q 005325 207 DGAVECFDMRM--RS---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG-KVLIYDLRSSYPIRVKDHMFDSP 280 (702)
Q Consensus 207 DG~V~iWD~~t--~~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG-~V~lwDlrs~~~l~~~~h~~~~~ 280 (702)
.+.|.-|++.. +. ....+... ...+..-.++...+ |.+.+++...| .|.+|+.. ++++....-. ...
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~----~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-~~~ 256 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFD----EEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-VKR 256 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEcc----CCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECC-CCC
Confidence 57888887652 11 11111111 11355566777777 77765555554 89999988 7776633321 246
Q ss_pred eEEEEEe
Q 005325 281 IVDIKWH 287 (702)
Q Consensus 281 I~sl~fs 287 (702)
+++++|-
T Consensus 257 ~t~~~Fg 263 (307)
T COG3386 257 PTNPAFG 263 (307)
T ss_pred CccceEe
Confidence 7888886
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.07 E-value=0.038 Score=48.78 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=73.0
Q ss_pred eEEEEEcC---CCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 237 VTALEFDS---NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 237 Vtslafsp---d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
|++|++.+ ++...|++||.|..|+||+=. ..+....- ...|++|+-.. .+.++.+-.+|+|-+|+. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e--~~~v~~L~~~~----~~~F~Y~l~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE--TDKVTSLCSLG----GGRFAYALANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec--ccceEEEEEcC----CCEEEEEecCCEEEEEeC--c
Confidence 66777654 324689999999999999743 34442222 36888888875 677888889999999986 3
Q ss_pred ceeEEecCCCCceeEEEEEcCCC----EEEEEeCCCcEE
Q 005325 314 ESMTSIEPTAGKINDVCVFKDSG----LLLLALDCSQIP 348 (702)
Q Consensus 314 ~~l~~i~~h~~~I~~v~~~p~~~----~l~~a~~d~~I~ 348 (702)
..+..+.. ...+++++++.-.+ -|++|-.+|+|-
T Consensus 72 ~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45666666 56688888877443 688888888764
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.06 E-value=0.74 Score=50.99 Aligned_cols=238 Identities=15% Similarity=0.147 Sum_probs=120.5
Q ss_pred eeEEEECCCCCEEEEEEecCC----cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCC-----------eE
Q 005325 65 TTKIRETPDGEFLIVSGIYPP----QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADR-----------SI 129 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg----~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~-----------~I 129 (702)
+..+++||||++++++-+..| .|+++|+.+....-..-....... +.+.+|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 346789999999766656655 499999988543222211111122 55666777777666543 36
Q ss_pred EEEecCCce----EEEecCCCcc---ceEEecCCCcEEEEecC----CCEEEEECCCC----eEEEEeecCCCCeEE-EE
Q 005325 130 SLHAKYGKH----YSLRIPRMGR---DMAYNSWSCDLLCAASS----PELYRINLEQG----RFLSSLNTQSPALNV-VS 193 (702)
Q Consensus 130 ~iw~~~g~~----~~~~i~~~~~---~l~~~~~s~~llv~s~d----~~V~vwdl~~g----~~~~~l~~h~~~V~~-l~ 193 (702)
.+|.+.... ..+..+.... .+........+++.... ..|++.++..+ .....+..+...+.. +.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 777776321 2222222222 33344444445543332 34888899875 223333334434433 33
Q ss_pred EcCCCCEEEEEEc---CCeEEEEECCCCcc--ee-EEecccCCCCCCC--CeEEEEEcCCCCCEEEEEeCCC--eEEEEE
Q 005325 194 RSKLHGLIACGGE---DGAVECFDMRMRSS--AA-RINAVAPAGDADQ--EVTALEFDSNGGFLMGVGSSTG--KVLIYD 263 (702)
Q Consensus 194 ~sp~~~llasgs~---DG~V~iWD~~t~~~--v~-~l~~~~~~~~~~~--~Vtslafspd~g~~LasGs~DG--~V~lwD 263 (702)
.. .+.+++.... .+.|...++..... .. .+..+ .. .+..+.... +.+++....++ .|.+||
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~------~~~~~l~~~~~~~--~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE------DEDVSLEDVSLFK--DYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--------SSSEEEEEEEEET--TEEEEEEEETTEEEEEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC------CCceeEEEEEEEC--CEEEEEEEECCccEEEEEE
Confidence 33 3334443322 46787788876653 22 33333 23 455555542 34444545554 588899
Q ss_pred cC-CCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE--Ee--CCCEEEEEeCCCCcee
Q 005325 264 LR-SSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI--TT--DNHIVRIWDPETGESM 316 (702)
Q Consensus 264 lr-s~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~--ss--~Dg~V~IWd~~tg~~l 316 (702)
+. ......+.... .+.|..+...+ ....+.+ ++ .-.+|..||+.+++..
T Consensus 356 ~~~~~~~~~~~~p~-~g~v~~~~~~~---~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 356 LDDGKESREIPLPE-AGSVSGVSGDF---DSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TT-TEEEEEEESSS-SSEEEEEES-T---T-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCCCcEEeeecCCc-ceEEeccCCCC---CCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 88 43333333221 23455555443 2233332 33 2678888999887653
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.03 E-value=0.16 Score=52.09 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=120.4
Q ss_pred ceeeeecccCCCc--eeEEEECCCCCEEEEEEecC-CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEE-C
Q 005325 52 RVELIQDLWFETA--TTKIRETPDGEFLIVSGIYP-PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLC-A 125 (702)
Q Consensus 52 rieliqd~~~~~~--v~~i~~SpDG~~llatGs~d-g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s-~ 125 (702)
..++++.+.|... ...+.|..+|.++..||.+. ..|+.+|+.+............. -.+..+ +..|.-.. .
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEec
Confidence 4577888877644 45677877888756666654 36999999985443332222211 112222 24454444 4
Q ss_pred CCeEEEEecCC--ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCCC
Q 005325 126 DRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKLH 198 (702)
Q Consensus 126 D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~~ 198 (702)
++...+|+... ....+..+..+..++ ..+..|+.+..+..++.+|..+.+....+.... ..+|-+.|. +|
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 78888898874 344566677777777 445568888888899999999988877765532 357778886 67
Q ss_pred CEEEEEEcCCeEEEEECCCCcceeEEecccC-----C-C---CCCCCeEEEEEcCCCCCEEEEE
Q 005325 199 GLIACGGEDGAVECFDMRMRSSAARINAVAP-----A-G---DADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~v~~l~~~~~-----~-~---~~~~~Vtslafspd~g~~LasG 253 (702)
.+.|=.-....|...|+.+|..+..++...- . . ....-.+.|||+|..+.+++||
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6777666778899999999999988876410 0 0 1135688999999845555555
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.02 E-value=0.61 Score=51.68 Aligned_cols=237 Identities=17% Similarity=0.105 Sum_probs=124.5
Q ss_pred ccCCCcceEEEEecCC----cEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEE
Q 005325 3 SRGGEGNAMKSTLING----VKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLI 78 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~----Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~ll 78 (702)
||||.-+++.++..|+ ++|+++.+| +.+++-+ ..+. ...+.|++|++.++
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i------------------------~~~~-~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGI------------------------ENPK-FSSVSWSDDGKGFF 185 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEE------------------------EEEE-SEEEEECTTSSEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcc------------------------cccc-cceEEEeCCCCEEE
Confidence 6788866666666555 777788777 3332221 1111 12399999999866
Q ss_pred EEEecC----------CcEEEEEcCCc----eEEEeeecCCce-EEEEEEcCCCCEEEEEEC-CCe---EEEEecCCc--
Q 005325 79 VSGIYP----------PQVKVYELRQL----SLKFERHLDSEI-INFEVLADDYSKLAFLCA-DRS---ISLHAKYGK-- 137 (702)
Q Consensus 79 atGs~d----------g~I~vwdl~~~----~~~~~~h~~~~v-v~~~~ls~dg~~Las~s~-D~~---I~iw~~~g~-- 137 (702)
.+...+ ..|.+|.+.+. .+.|+.. +... ...+..+.|+++|+..+. ..+ |.+.+....
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec-CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 665433 24788888772 2455554 3333 445667889898865443 333 444455432
Q ss_pred ----eEEEecCCCccceEEecCCCcEEEEecC----CCEEEEECCCCe---EEEEeecCCCC--eEEEEEcCCCCEEEEE
Q 005325 138 ----HYSLRIPRMGRDMAYNSWSCDLLCAASS----PELYRINLEQGR---FLSSLNTQSPA--LNVVSRSKLHGLIACG 204 (702)
Q Consensus 138 ----~~~~~i~~~~~~l~~~~~s~~llv~s~d----~~V~vwdl~~g~---~~~~l~~h~~~--V~~l~~sp~~~llasg 204 (702)
...+.....+........+..+++.+.. +.|...++.... ....+..|... +..+... .+.++++-
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~ 343 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSY 343 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEE
Confidence 2222222222211122224445554443 347777887765 23345555553 4455443 22455555
Q ss_pred EcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeC---CCeEEEEEcCCCeEEEEe
Q 005325 205 GEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV-GSS---TGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 205 s~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~---DG~V~lwDlrs~~~l~~~ 273 (702)
..++ .|++||+..+.....+.... .+.|..+...++ +..|.. -++ -++|..||+.+++...++
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~-----~g~v~~~~~~~~-~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPE-----AGSVSGVSGDFD-SDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSS-----SSEEEEEES-TT--SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EECCccEEEEEECCCCcEEeeecCCc-----ceEEeccCCCCC-CCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 5554 47888988444455555441 345666666666 444432 222 367888899888765543
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.12 Score=55.28 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=79.3
Q ss_pred CeEEEEecCCc-----e----EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEEeecC-CCCeEEEEEc
Q 005325 127 RSISLHAKYGK-----H----YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSSLNTQ-SPALNVVSRS 195 (702)
Q Consensus 127 ~~I~iw~~~g~-----~----~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h-~~~V~~l~~s 195 (702)
|.|.++++... . ....++....+++.. +. .++++.++.|++|++...+ ++..-..+ ...+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 77888776642 1 112233333344444 33 4777778999999888777 54432222 2256666654
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 196 KLHGLIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
+++|++|..-..|.++.... ...+..+... .....+++++|-++ +..++++..+|.|.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d-~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARD----YQPRWVTAAEFLVD-EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEE----SS-BEEEEEEEE-S-SSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEec----CCCccEEEEEEecC-CcEEEEEcCCCeEEEEEEC
Confidence 56999999888888775443 2223333222 11467999999977 5799999999999999876
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.92 E-value=0.013 Score=68.66 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=99.0
Q ss_pred CEEEE-EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC------CCCEEEEEeCCCeEEEEEcCCCe--E
Q 005325 199 GLIAC-GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN------GGFLMGVGSSTGKVLIYDLRSSY--P 269 (702)
Q Consensus 199 ~llas-gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd------~g~~LasGs~DG~V~lwDlrs~~--~ 269 (702)
++|+. ......|+-.|+..|+.|..+..+. ..+|..+ .|+ .....++|-++..|..||.|-.. +
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~-----~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHD-----DIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCC-----CcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 44443 3456889999999999999999982 2334444 342 13456788899999999999632 3
Q ss_pred EEEeeccC--CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 270 IRVKDHMF--DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 270 l~~~~h~~--~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
+....|.| ....+|++-+ .++++++++.+|.|++||...-..-+.|++-..+|.+|+.+.+|.+|++.|..--|
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt----~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATT----EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLL 642 (794)
T ss_pred eeccccccccCCCceEEEec----CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEE
Confidence 33223322 3456677665 48899999999999999965434445566667899999999999988887776544
Q ss_pred EE
Q 005325 348 PS 349 (702)
Q Consensus 348 ~~ 349 (702)
.+
T Consensus 643 Li 644 (794)
T PF08553_consen 643 LI 644 (794)
T ss_pred EE
Confidence 43
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0008 Score=66.16 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=62.0
Q ss_pred EEEEECCCeEEEEecCCceEEEecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEE-EEEcC
Q 005325 120 LAFLCADRSISLHAKYGKHYSLRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNV-VSRSK 196 (702)
Q Consensus 120 Las~s~D~~I~iw~~~g~~~~~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~-l~~sp 196 (702)
+..-+.|++|.-+++.......+...+.. .+....++..+++++.++.|++|++..- .....+..-...|-| |....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR 112 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence 34445566666554443222222222222 2344556677999999999999987621 111111111122322 22233
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 197 LHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
++.+.++++.||.|+.|++.-.+.+.....|
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccc
Confidence 4468999999999999999877777666665
No 373
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.12 Score=58.45 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=93.3
Q ss_pred eeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeE
Q 005325 53 VELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSI 129 (702)
Q Consensus 53 ieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I 129 (702)
..+++..-+|..+.--+++..++| ++.|+.-|.+.+|+-.. +.++..+ ...++..+.++++..++|.++..+.|
T Consensus 24 ~~~~~~~~~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~~~~--~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 24 PALLQPGFFPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLKNEG--ATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred hhhhccccCcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcccccC--ccceEEEEEecchhHhhhhhcCCceE
Confidence 344555567777777888889999 89999999999999877 2333333 33356677788887778888888888
Q ss_pred EEEecCC-----ceEEEecCC-CccceEEecCC---CcEEEEecCCCEEEEECCCC-eE---EEEeecCCCCeEEEEEcC
Q 005325 130 SLHAKYG-----KHYSLRIPR-MGRDMAYNSWS---CDLLCAASSPELYRINLEQG-RF---LSSLNTQSPALNVVSRSK 196 (702)
Q Consensus 130 ~iw~~~g-----~~~~~~i~~-~~~~l~~~~~s---~~llv~s~d~~V~vwdl~~g-~~---~~~l~~h~~~V~~l~~sp 196 (702)
.++-... ..+...... +...+.+..|+ ..+|+|...|.|...-+.+. .+ .+.+..-.+.|-.|...
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 8875441 222232222 22344444444 45899999999887766652 11 12233334567777665
Q ss_pred CCCEEEE
Q 005325 197 LHGLIAC 203 (702)
Q Consensus 197 ~~~llas 203 (702)
++.+|++
T Consensus 180 q~~LLVS 186 (726)
T KOG3621|consen 180 QSYLLVS 186 (726)
T ss_pred cceehHh
Confidence 3334444
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.98 Score=49.59 Aligned_cols=188 Identities=14% Similarity=0.105 Sum_probs=129.3
Q ss_pred cceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEECCCCcceeE
Q 005325 148 RDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---DGAVECFDMRMRSSAAR 223 (702)
Q Consensus 148 ~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---DG~V~iWD~~t~~~v~~ 223 (702)
..++..+....+++...+ +.|.++|..+...+.+..... ....++++|++..+.++.. +++|.+.|..+.+.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 366777777767666654 779999988877777664443 5678999999966555554 68999999999988888
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEE-E----eeccCCCCeEEEEEeeccCCCCCeE
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIR-V----KDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~-~----~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
+... ..+ ..++++|+ |..+.+. ..++.|.++|........ . ... ...-..+.+.| ++.++.
T Consensus 156 ~~vG------~~P-~~~a~~p~-g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~---~g~~~y 222 (381)
T COG3391 156 IPVG------NTP-TGVAVDPD-GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDP---DGNRVY 222 (381)
T ss_pred EecC------CCc-ceEEECCC-CCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECC---CCCEEE
Confidence 6655 234 89999999 8866555 478999999977665542 1 111 22336788887 444455
Q ss_pred EEeC---CCEEEEEeCCCCceeEEecCCCC-ceeEEEEEcCCCEEEEEeCC-CcEEE
Q 005325 298 ITTD---NHIVRIWDPETGESMTSIEPTAG-KINDVCVFKDSGLLLLALDC-SQIPS 349 (702)
Q Consensus 298 ~ss~---Dg~V~IWd~~tg~~l~~i~~h~~-~I~~v~~~p~~~~l~~a~~d-~~I~~ 349 (702)
+... ++.|.+.|..++.......+-.. ....+.+.|++..+.++... +.+.+
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 5443 36899999998887765222122 45567889999888877544 44443
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.83 E-value=0.78 Score=47.58 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=109.0
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEe---------------eecCCceEEEE-EEcCCCCEEEEEECCCe
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFE---------------RHLDSEIINFE-VLADDYSKLAFLCADRS 128 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~---------------~h~~~~vv~~~-~ls~dg~~Las~s~D~~ 128 (702)
|..|.+-|+-+.+++.. |+.|.+|++..+..... ......+..+. .-...+...+.+...+.
T Consensus 38 I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred EEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 77788888777755553 49999999987433221 11111122222 12234444455555668
Q ss_pred EEEEecCC-------ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC------------CCe
Q 005325 129 ISLHAKYG-------KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS------------PAL 189 (702)
Q Consensus 129 I~iw~~~g-------~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~------------~~V 189 (702)
|.+|.... ....+.+|.....+.+. .+.++.+......++|+.++.....+.... .++
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 88875542 22345667676677777 455555557778889999876644332211 234
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCccee--EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 190 NVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA--RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~--~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
..+.++ ++.+|++- |..-.+.|. .|.+.. .+.-. ..+.++++.. .+|++-+. +.|-||++.++
T Consensus 193 ~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 193 GIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred EEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCC
Confidence 444444 34555542 333344444 344333 44443 5677788863 35555444 55999999999
Q ss_pred eEEEEeec
Q 005325 268 YPIRVKDH 275 (702)
Q Consensus 268 ~~l~~~~h 275 (702)
+.+.....
T Consensus 258 ~lvQ~i~~ 265 (275)
T PF00780_consen 258 ELVQTIPL 265 (275)
T ss_pred cEEEEEEC
Confidence 88775443
No 376
>PHA02713 hypothetical protein; Provisional
Probab=96.79 E-value=0.035 Score=64.11 Aligned_cols=188 Identities=7% Similarity=-0.005 Sum_probs=97.0
Q ss_pred EEEEEEecC------CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCC-----eEEEEecCCceEEE-e-
Q 005325 76 FLIVSGIYP------PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADR-----SISLHAKYGKHYSL-R- 142 (702)
Q Consensus 76 ~llatGs~d------g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~-----~I~iw~~~g~~~~~-~- 142 (702)
.|++.|+.+ ..+.+||..+...............+....-++...+.|+.++ ++..|++....... .
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 447777754 3477888766322111111111112222233556667777653 47888877433222 1
Q ss_pred cCCCccceEEecCCCcEEE-EecC-----------------------CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC
Q 005325 143 IPRMGRDMAYNSWSCDLLC-AASS-----------------------PELYRINLEQGRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv-~s~d-----------------------~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
+|..............+++ |+.+ +.|.+||+.+.+....-........+....-++
T Consensus 385 mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~ 464 (557)
T PHA02713 385 MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKD 464 (557)
T ss_pred CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECC
Confidence 1211112222223445544 4332 347889988876532211111111111122246
Q ss_pred CEEEEEEcC------CeEEEEECCC-Cc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCC
Q 005325 199 GLIACGGED------GAVECFDMRM-RS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG--KVLIYDLRSS 267 (702)
Q Consensus 199 ~llasgs~D------G~V~iWD~~t-~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG--~V~lwDlrs~ 267 (702)
.+.+.|+.+ ..|..||+.+ .+ .+..+... ......+.+ + +...++|+.+| .|-.||+.+.
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~------r~~~~~~~~--~-~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR------LSALHTILH--D-NTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc------cccceeEEE--C-CEEEEEeeecceeehhhcCcccc
Confidence 777878754 2478999997 43 33434333 233334444 3 78899999888 7888999887
Q ss_pred eEEEE
Q 005325 268 YPIRV 272 (702)
Q Consensus 268 ~~l~~ 272 (702)
+...+
T Consensus 536 ~W~~~ 540 (557)
T PHA02713 536 EWNHI 540 (557)
T ss_pred cccch
Confidence 76543
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.46 Score=48.61 Aligned_cols=248 Identities=8% Similarity=0.042 Sum_probs=141.8
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCc-EEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECC----
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQ-VKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCAD---- 126 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~-I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D---- 126 (702)
+++.....|.....|+|+|.-...++.+-..|+ ..+||...... ......+-....--.||+||.+|...-+|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~ 138 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN 138 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC
Confidence 445556678888899999988887787777776 55788877222 11111111122234689999999766554
Q ss_pred -CeEEEEecCCceE-EEecCCCcc---ceEEecCCCcEEEEecC------------------CCEEEEECCCCeEEEEee
Q 005325 127 -RSISLHAKYGKHY-SLRIPRMGR---DMAYNSWSCDLLCAASS------------------PELYRINLEQGRFLSSLN 183 (702)
Q Consensus 127 -~~I~iw~~~g~~~-~~~i~~~~~---~l~~~~~s~~llv~s~d------------------~~V~vwdl~~g~~~~~l~ 183 (702)
|.|-||+...... .-.++.++- .+.+......++++... ..+.+.|..+|..+....
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 6788888763222 223343333 67777777666665441 224445656665554322
Q ss_pred ----cCCCCeEEEEEcCCCCEEEEEEcCCe-----EEEEECCCCcceeEEecccCC-CCCCCCeEEEEEcCCCCCEEEEE
Q 005325 184 ----TQSPALNVVSRSKLHGLIACGGEDGA-----VECFDMRMRSSAARINAVAPA-GDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 184 ----~h~~~V~~l~~sp~~~llasgs~DG~-----V~iWD~~t~~~v~~l~~~~~~-~~~~~~Vtslafspd~g~~LasG 253 (702)
.+.-.|..++..+++.+++.|-.-|- -.+=-.+.++.+.-+..+... ..-...|-+|+.+.+.+...++.
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 23446888888888766665543321 111111223333333332000 00125677888887646566666
Q ss_pred eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 254 SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
-..+...+||..++..+...... .+..++-. .+-+++++.+|.|.++.
T Consensus 299 P~GN~~vi~da~tG~vv~~a~l~---daaGva~~-----~~gf~vssg~G~~~~~s 346 (366)
T COG3490 299 PRGNRAVIWDAATGAVVSEAALP---DAAGVAAA-----KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCCeEEEEEcCCCcEEeccccc---ccccceec-----cCceEEecCCceEEecc
Confidence 66677889999999877532221 12223332 45567777777777663
No 378
>PRK13684 Ycf48-like protein; Provisional
Probab=96.77 E-value=1.1 Score=48.36 Aligned_cols=151 Identities=9% Similarity=0.080 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEE-EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVEC-FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~i-WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
...++++.+.|++.++++|.. |.+.. +|-. ++.-..+... ....++++.+.|+ +..+++| ..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~-----~~~~l~~i~~~~~-g~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRN-----SSRRLQSMGFQPD-GNLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCC-----CcccceeeeEcCC-CCEEEEe-cCCEEEEccC
Confidence 346889999998877666554 65543 2221 2222222222 1478999999998 7776665 5576653223
Q ss_pred CCCeEEE-Eeec--cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEEEEEcCCCEE
Q 005325 265 RSSYPIR-VKDH--MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP---TAGKINDVCVFKDSGLL 338 (702)
Q Consensus 265 rs~~~l~-~~~h--~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v~~~p~~~~l 338 (702)
..+.... ...+ .....+.++.|.| .+.+++++.+|.|. .....|+....+.. -...++.+.|..++. .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~----~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRT----PGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-G 316 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcC----CCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc-e
Confidence 3333222 1111 0134578899986 56688888888664 55666777666542 123577787776654 4
Q ss_pred EEEeCCCcEEEEE
Q 005325 339 LLALDCSQIPSYF 351 (702)
Q Consensus 339 ~~a~~d~~I~~~~ 351 (702)
++++..|.|..|.
T Consensus 317 ~~~G~~G~il~~~ 329 (334)
T PRK13684 317 FVLGQRGVLLRYV 329 (334)
T ss_pred EEECCCceEEEec
Confidence 6677777777653
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.58 Score=48.00 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=102.3
Q ss_pred CEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 167 ELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
.|+.+|+.+|+.+........ .--.|++. .+.++...-.++...+||..+.+.+.++... ..=..|+. +
T Consensus 69 ~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-------~EGWGLt~--d 138 (264)
T PF05096_consen 69 SLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-------GEGWGLTS--D 138 (264)
T ss_dssp EEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-------SS--EEEE--C
T ss_pred EEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecC-------CcceEEEc--C
Confidence 478899999988766554432 22233333 2344445556899999999999999988776 45566664 3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEE---EeeccCCCC---eEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEE
Q 005325 246 GGFLMGVGSSTGKVLIYDLRSSYPIR---VKDHMFDSP---IVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTS 318 (702)
Q Consensus 246 ~g~~LasGs~DG~V~lwDlrs~~~l~---~~~h~~~~~---I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~ 318 (702)
+..|+....+..|.++|..+.+... +... +.| ++-|.|. ++.+.+-- ....|...|..+|+.+..
T Consensus 139 -g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~--g~pv~~LNELE~i-----~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 139 -GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN--GRPVSNLNELEYI-----NGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp -SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET--TEE---EEEEEEE-----TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred -CCEEEEECCccceEEECCcccceEEEEEEEEC--CEECCCcEeEEEE-----cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 6777777778899999988766544 3332 344 5667887 56666665 366777889999998876
Q ss_pred ecC------------C---CCceeEEEEEcCCCEEEEEeC
Q 005325 319 IEP------------T---AGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 319 i~~------------h---~~~I~~v~~~p~~~~l~~a~~ 343 (702)
+.. + ..-.|.||+.|..+.|++.+.
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 521 1 346899999997776666553
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.006 Score=67.82 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeE-EEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEeccc
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALN-VVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~-~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
+.|+|.-.-++.+..+|+|.+.-+. .+.+.++..|...++ +++|.|+|++||+|-.||+|++.|+.++..+......
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 3334433345666777776665555 566677776776777 9999999999999999999999999999888773222
Q ss_pred CCCCCCCCeEEEEEcCC
Q 005325 229 PAGDADQEVTALEFDSN 245 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd 245 (702)
....|+++-|+|.
T Consensus 104 ----~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 104 ----VETDISKGIWDRI 116 (665)
T ss_pred ----cccchheeecccc
Confidence 1378999999754
No 381
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.70 E-value=0.4 Score=52.78 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=101.2
Q ss_pred EecCCCcEEEEecCCCEEEEECCCCeEEEEe--ec------CCCCeEEEEEcC-----CC---CEEEEEEcCCeEEEEEC
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQGRFLSSL--NT------QSPALNVVSRSK-----LH---GLIACGGEDGAVECFDM 215 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l--~~------h~~~V~~l~~sp-----~~---~llasgs~DG~V~iWD~ 215 (702)
.+..-+-++++..+|.+.+.|++....+..- .. ....|+++.|.. ++ -+|++|+..|.+.+|.+
T Consensus 93 ~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 93 KNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 3344555888888999999999877766542 22 234688888862 22 57889999999999977
Q ss_pred C--CCc-ceeEEecccCCCCCCCCeEEEE-EcCCCC-------------------CEEEEEeCCCeEEEEEcCCCeEEE-
Q 005325 216 R--MRS-SAARINAVAPAGDADQEVTALE-FDSNGG-------------------FLMGVGSSTGKVLIYDLRSSYPIR- 271 (702)
Q Consensus 216 ~--t~~-~v~~l~~~~~~~~~~~~Vtsla-fspd~g-------------------~~LasGs~DG~V~lwDlrs~~~l~- 271 (702)
. .+. -...+.... ..+.++|..|. |+.+.| ..+++..+...|+|+.+-+.+..+
T Consensus 173 lp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 173 LPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK 250 (395)
T ss_dssp EE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEE
T ss_pred ecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccce
Confidence 5 211 111111110 11235555554 322211 135555667889999998877655
Q ss_pred EeeccCCCCeEEEEEeecc--CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC----CceeEEEEEcCCCEEEEEeCCC
Q 005325 272 VKDHMFDSPIVDIKWHQSI--NTERPKLITTDNHIVRIWDPETGESMTSIEPTA----GKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 272 ~~~h~~~~~I~sl~fsp~~--~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~----~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
.... ......+++.+.. ..+..|++-..+|.|+++.+-.-+.+..+..+. ..+...++.+++.+++..+. .
T Consensus 251 ~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-s 327 (395)
T PF08596_consen 251 SFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-S 327 (395)
T ss_dssp E-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-S
T ss_pred eecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-c
Confidence 2222 2233445553211 012334444589999999999988887776532 24556778888775555543 3
Q ss_pred cEEEEEc
Q 005325 346 QIPSYFI 352 (702)
Q Consensus 346 ~I~~~~i 352 (702)
.+..+.+
T Consensus 328 E~~l~sv 334 (395)
T PF08596_consen 328 EIQLFSV 334 (395)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 4444433
No 382
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.57 E-value=0.11 Score=47.36 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=85.7
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCC--------cceeEEecccCCCCCCCCeEEEEEcC---C-CCCEEEEEeCCC
Q 005325 190 NVVSRSKLHGLIACGGEDGAVECFDMRMR--------SSAARINAVAPAGDADQEVTALEFDS---N-GGFLMGVGSSTG 257 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~DG~V~iWD~~t~--------~~v~~l~~~~~~~~~~~~Vtslafsp---d-~g~~LasGs~DG 257 (702)
..-.|...+..|++++.-|.|.|+++... ..+..|... ..|++|+-.+ + ....|++|+. .
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------~~italaaG~l~~~~~~D~LliGt~-t 73 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------QEITALAAGRLKPDDGRDCLLIGTQ-T 73 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-------CceEEEEEEecCCCCCcCEEEEecc-c
Confidence 34457777888999999999999998743 355666665 7888887544 2 1456666655 5
Q ss_pred eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 258 KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 258 ~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
.|..||+....-+..+.- ...|.+|.+-.-......+++.+....|.-||..-.+.+.++.
T Consensus 74 ~llaYDV~~N~d~Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred eEEEEEcccCchhhhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 689999998887776665 4567777775321224678888888888888887666666654
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.53 E-value=0.17 Score=58.51 Aligned_cols=213 Identities=8% Similarity=0.035 Sum_probs=101.2
Q ss_pred cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC------CeEEEEecCCceEEEecCC--Ccc-ceEEecCC
Q 005325 86 QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD------RSISLHAKYGKHYSLRIPR--MGR-DMAYNSWS 156 (702)
Q Consensus 86 ~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D------~~I~iw~~~g~~~~~~i~~--~~~-~l~~~~~s 156 (702)
.+.+||..+...............+....-++..++.|+.+ ..+..|++...... .++. ..+ ........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEEC
Confidence 57788887743322111111111122222244556666653 34666776643222 2222 122 22223334
Q ss_pred CcEEE-EecCC-----CEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEEcC---------------------
Q 005325 157 CDLLC-AASSP-----ELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGGED--------------------- 207 (702)
Q Consensus 157 ~~llv-~s~d~-----~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs~D--------------------- 207 (702)
..+++ ||.++ .+.+||+.+.+... ++.........+.+ ++.+.+.|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 45544 44432 48889988775432 22221112222222 57788888765
Q ss_pred --CeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC------CeEEEEEcCC-CeEEEEeecc
Q 005325 208 --GAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST------GKVLIYDLRS-SYPIRVKDHM 276 (702)
Q Consensus 208 --G~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D------G~V~lwDlrs-~~~l~~~~h~ 276 (702)
.+|..||+.+.+- +..+... .... +++.. + +...++|+.+ ..|..||..+ .+...+....
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~------r~~~-~~~~~-~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTG------TIRP-GVVSH-K-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcc------cccC-cEEEE-C-CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 2588899887642 2222211 1122 22322 2 6677777654 2467899987 5544322221
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeCCC--EEEEEeCCCCc
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTDNH--IVRIWDPETGE 314 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~Dg--~V~IWd~~tg~ 314 (702)
......+++.. ++.-++++|.++ ++-.||+.+.+
T Consensus 501 ~~r~~~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SRLSALHTILH----DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccccceeEEE----CCEEEEEeeecceeehhhcCccccc
Confidence 11112333333 244455566566 67777776644
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.45 E-value=0.47 Score=52.23 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCC-----------------CCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINT-----------------ERP 295 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~-----------------~~~ 295 (702)
...+.+|+.+|+ +.+.|+..+=|.|.|+|+.++..+. .++.. . -.+.|...... ...
T Consensus 307 ~R~~~~i~~sP~-~~laA~tDslGRV~LiD~~~~~vvrmWKGYR--d--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 307 KREGESICLSPS-GRLAAVTDSLGRVLLIDVARGIVVRMWKGYR--D--AQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred CceEEEEEECCC-CCEEEEEcCCCcEEEEECCCChhhhhhccCc--c--ceEEEEEeecccccccccccccCCCCcceEE
Confidence 456789999999 9999998888999999999877665 33331 1 12233221100 112
Q ss_pred eEE-EeCCCEEEEEeCCCCceeEEecC
Q 005325 296 KLI-TTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 296 ll~-ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
|++ .-.-|.|-||.+.+|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 222 23589999999998888776654
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.44 E-value=0.0082 Score=40.19 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=31.1
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD 263 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD 263 (702)
++..+..+ ...|++++|++. +..+++++.|+.|++||
T Consensus 4 ~~~~~~~~------~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGH------TGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEec------CCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 44555555 678999999999 89999999999999996
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.29 Score=56.70 Aligned_cols=200 Identities=10% Similarity=0.059 Sum_probs=107.1
Q ss_pred ceeEEEECCCCCEEEEEEe-------cCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 64 ATTKIRETPDGEFLIVSGI-------YPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs-------~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
.+..+++||||+.++++.. +...|.+++.......+... . -...-.|++||..|++.+....+.+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~-~~t~PsWspDG~~lw~v~dg~~~~~----- 422 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--H-SLTRPSWSLDADAVWVVVDGNTVVR----- 422 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--C-CCCCceECCCCCceEEEecCcceEE-----
Confidence 5678899999999666652 23355555553322222111 1 1334457888888877764322211
Q ss_pred ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEE---E
Q 005325 137 KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVEC---F 213 (702)
Q Consensus 137 ~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~i---W 213 (702)
+......+.+++.++..+.... .....|..+.|+|+|..|+... +|.|.+ -
T Consensus 423 ----------------------v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 423 ----------------------VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred ----------------------EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 0001123567777776665433 2334699999999998777765 477776 3
Q ss_pred ECCCCcceeEEecccCC-CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC--CeEEEEeeccCCCCeEEEEEeecc
Q 005325 214 DMRMRSSAARINAVAPA-GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS--SYPIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~-~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs--~~~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
....+. ..+...... ..-...+.++.|.++ +. |+++..++...+|-+.- .....+.......++.+|+=+|
T Consensus 477 r~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~-~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-- 550 (591)
T PRK13616 477 QTEDGQ--YALTNPREVGPGLGDTAVSLDWRTG-DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-- 550 (591)
T ss_pred eCCCCc--eeecccEEeecccCCccccceEecC-CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--
Confidence 433343 222111000 011234688999988 65 55666666555565442 2211112221235677777654
Q ss_pred CCCCCeEEEeCCCEEE
Q 005325 291 NTERPKLITTDNHIVR 306 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~ 306 (702)
..++++..++.+.
T Consensus 551 ---~~iyv~~~~g~~~ 563 (591)
T PRK13616 551 ---STVYVTDARAVLQ 563 (591)
T ss_pred ---ceEEEEcCCceEE
Confidence 2455555555443
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.41 E-value=0.16 Score=58.86 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=100.8
Q ss_pred CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE------cCC--eEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 165 SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG------EDG--AVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 165 d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs------~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
+|.+...+-..-..+....+....+...+++|++..++... .|. .|.+++.. +.. ..+... ..
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-------~~ 398 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-------HS 398 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-------CC
Confidence 66666654333222222222334678899999998777665 244 45555542 222 333222 34
Q ss_pred eEEEEEcCCCCCEEEEEeCC------------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCE
Q 005325 237 VTALEFDSNGGFLMGVGSST------------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHI 304 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~D------------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~ 304 (702)
.++-.|+|+ |..|++.... +.+.+.++..+.+.. .. ...|..+.|+| ++.++++.. ++.
T Consensus 399 ~t~PsWspD-G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~--~g~Issl~wSp---DG~RiA~i~-~g~ 469 (591)
T PRK13616 399 LTRPSWSLD-ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV--PGPISELQLSR---DGVRAAMII-GGK 469 (591)
T ss_pred CCCceECCC-CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc--CCCcCeEEECC---CCCEEEEEE-CCE
Confidence 888999999 8877766432 233333443333221 11 45799999998 555565555 467
Q ss_pred EEE---EeCCCCce-e---EEecCCC-CceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005325 305 VRI---WDPETGES-M---TSIEPTA-GKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 305 V~I---Wd~~tg~~-l---~~i~~h~-~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
|.| -....|.. + ..+.... ..+.++.|.+++.++ ++..++...+|.++.-|..
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc
Confidence 776 44344541 1 1122212 246889999988855 6666777778888776654
No 388
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.39 E-value=3.2 Score=49.25 Aligned_cols=285 Identities=12% Similarity=0.034 Sum_probs=146.3
Q ss_pred ceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE------EEe-eecCCceEEEEEEcCC---CCEEE
Q 005325 52 RVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL------KFE-RHLDSEIINFEVLADD---YSKLA 121 (702)
Q Consensus 52 rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~------~~~-~h~~~~vv~~~~ls~d---g~~La 121 (702)
+++.+..+.+. .||..-++|- +.+|+.-|.=.+-.+.+..- .++ -..-.++++++.+..+ ...++
T Consensus 299 kve~lge~sia---ssi~~L~ng~--lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qiv 373 (1096)
T KOG1897|consen 299 KVEYLGETSIA---SSINYLDNGV--LFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIV 373 (1096)
T ss_pred EEEecCCcchh---hhhhcccCce--EEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEE
Confidence 44555555444 4444455663 56677655445555544111 001 1113477888888766 34566
Q ss_pred EEEC---CCeEEEEecC-C--ceEEEecCCCc--cceE--EecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEE
Q 005325 122 FLCA---DRSISLHAKY-G--KHYSLRIPRMG--RDMA--YNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNV 191 (702)
Q Consensus 122 s~s~---D~~I~iw~~~-g--~~~~~~i~~~~--~~l~--~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~ 191 (702)
+|+. |+++++.... | .+-.+.+|... ..+. ..+.-.+.++.+.-++-.++.+...-......+-......
T Consensus 374 tCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~T 453 (1096)
T KOG1897|consen 374 TCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQT 453 (1096)
T ss_pred EEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCce
Confidence 6654 8999987655 3 34445555511 1222 2222222455555555555554322111111111122222
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 005325 192 VSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI 270 (702)
Q Consensus 192 l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l 270 (702)
+..+. .++.|+-.+. ..|++++-. ..+..+..+ ..++....+.+ ...+++++.++.+...++......
T Consensus 454 if~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~p-------~~~ti~~~~~n-~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 454 IFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRPP-------GKITIGVVSAN-ASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred EEEEccCCceEEEEec-ccEEEEcch--hhhhcccCC-------CceEEEEEeec-ceEEEEecCccEEEEEEeecccee
Confidence 33221 2333333333 457777654 234444444 45666555555 678888888888887787766633
Q ss_pred EEeeccCCCCeEEEEEeeccCCCC--CeEE-EeCCCE-EEEEeCCCCceeEEecC----CCCceeEEEEEcCCCEEEEEe
Q 005325 271 RVKDHMFDSPIVDIKWHQSINTER--PKLI-TTDNHI-VRIWDPETGESMTSIEP----TAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 271 ~~~~h~~~~~I~sl~fsp~~~~~~--~ll~-ss~Dg~-V~IWd~~tg~~l~~i~~----h~~~I~~v~~~p~~~~l~~a~ 342 (702)
....+.....|.|+.++|...... .+++ +..+.. +.|.-..+...++.... -+..|--.++-.+..+|+++.
T Consensus 523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlval 602 (1096)
T KOG1897|consen 523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVAL 602 (1096)
T ss_pred eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEc
Confidence 344444467899999998431111 2444 444333 33333334443332211 122444555666688999999
Q ss_pred CCCcEEEEEc
Q 005325 343 DCSQIPSYFI 352 (702)
Q Consensus 343 ~d~~I~~~~i 352 (702)
.+|.+..|.+
T Consensus 603 gdG~l~~fv~ 612 (1096)
T KOG1897|consen 603 GDGALLYFVL 612 (1096)
T ss_pred CCceEEEEEE
Confidence 9998876654
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.009 Score=70.09 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=72.2
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eeec
Q 005325 197 LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDH 275 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h 275 (702)
.+..++.|+..|.|-..|++..-. .+ + .......+|++++|+.+ |..++.|-.+|.|.+||+..++++. +..|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~--~-~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PL--H-QNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hh--h-cCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeec
Confidence 456789999999999999875311 00 0 11122589999999999 9999999999999999999998887 4555
Q ss_pred cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 276 MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 276 ~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
+.|.+.+-++-.. .++..+.+++.+-. +|.+
T Consensus 172 --~ap~t~vi~v~~t-~~nS~llt~D~~Gs-f~~l 202 (1206)
T KOG2079|consen 172 --GAPVTGVIFVGRT-SQNSKLLTSDTGGS-FWKL 202 (1206)
T ss_pred --CCccceEEEEEEe-CCCcEEEEccCCCc-eEEE
Confidence 5566666555322 24446666653322 5654
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.37 E-value=0.17 Score=58.54 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=84.8
Q ss_pred CEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCcc--eeEEecccCCCCCCCCe
Q 005325 167 ELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGGEDG-----AVECFDMRMRSS--AARINAVAPAGDADQEV 237 (702)
Q Consensus 167 ~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~~~--v~~l~~~~~~~~~~~~V 237 (702)
.+.+||..+.+... ++........... -.|.+.|+|+.|| +|..||+.+.+- +..+... ....
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~------r~~~ 421 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR------RSGH 421 (571)
T ss_pred eEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc------eeee
Confidence 46677777766433 2222222222222 2577889999886 489999987652 2222222 2233
Q ss_pred EEEEEcCCCCCEEEEEeCCC------eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCC-----EEE
Q 005325 238 TALEFDSNGGFLMGVGSSTG------KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNH-----IVR 306 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG------~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg-----~V~ 306 (702)
..+.+ +|...++|+.++ +|..||..++.......-...-.-..++.. ++.-++++|.|+ +|.
T Consensus 422 gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~----~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 422 GVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL----NGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred EEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE----CCEEEEECCccCCCccceEE
Confidence 33344 378888888554 578899988775443222111111224443 133444555333 477
Q ss_pred EEeCCCCceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcE
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQI 347 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I 347 (702)
.+|..+.+-.. +.+-..+...+.... ++.+.++++.++.-
T Consensus 495 ~ydp~~~~W~~-v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 495 RYDPETNQWTM-VAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred EEcCCCCceeE-cccCccccccccEEEECCEEEEEecccCcc
Confidence 88887644322 222122333332333 45566667766643
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.013 Score=68.69 Aligned_cols=106 Identities=17% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-YPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET 312 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~-~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t 312 (702)
..+.+.+.- +..+++|++.|+|...|++.. .|+..-.+ ...||++++|+. ++.+++.| .+|.|.+||+..
T Consensus 90 ~~v~s~a~~---~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~----dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 90 AGVISSAIV---VVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQ----DGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred cceeeeeee---eeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecC----CCceeccccCCCcEEEEEccC
Confidence 444555443 678999999999999998874 33333333 368999999995 55566555 899999999999
Q ss_pred CceeEEecCCCCceeEEEE---EcCCCEEEEEeCCCcEE
Q 005325 313 GESMTSIEPTAGKINDVCV---FKDSGLLLLALDCSQIP 348 (702)
Q Consensus 313 g~~l~~i~~h~~~I~~v~~---~p~~~~l~~a~~d~~I~ 348 (702)
+++++.+..|..+...+-+ ..++..++++...|.+.
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceE
Confidence 9999998877776666544 34555677777777643
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.051 Score=59.55 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=99.3
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC-------EEEEEeCCCeEEEEEcCCC-e--E
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF-------LMGVGSSTGKVLIYDLRSS-Y--P 269 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~-------~LasGs~DG~V~lwDlrs~-~--~ 269 (702)
+|.++..-..|+-.|+..|+.+.....+ ..|+-+.+.|+ .. .-++|-++..|.-||.|-. . .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~-------~di~mv~~t~d-~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE-------DDINMVDITPD-FKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc-------CCcceeeccCC-cchhcccccccEEeecCCceEEecccccCccee
Confidence 4455666677888999999999999988 45888888886 32 2457888999999999842 2 2
Q ss_pred EEEeeccCC--CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 270 IRVKDHMFD--SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 270 l~~~~h~~~--~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
.....|+|. ....|++-. .++++++++.+|.|++||...-..-+.+++-..+|..|..+.++..|+..|..--|
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT----~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATT----ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred eeeeccccccccccceeeec----CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence 234455432 233444443 47889999999999999984334455677777899999999999988777765444
Q ss_pred E
Q 005325 348 P 348 (702)
Q Consensus 348 ~ 348 (702)
.
T Consensus 496 L 496 (644)
T KOG2395|consen 496 L 496 (644)
T ss_pred E
Confidence 3
No 393
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.16 E-value=3.5 Score=47.34 Aligned_cols=190 Identities=12% Similarity=0.062 Sum_probs=106.4
Q ss_pred EEEEecCCcEEEEEcCCceEEEeeecCC--ceEE---E------EEEcCCCCEEEEEECCCeEEEEecC-CceEE-EecC
Q 005325 78 IVSGIYPPQVKVYELRQLSLKFERHLDS--EIIN---F------EVLADDYSKLAFLCADRSISLHAKY-GKHYS-LRIP 144 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~~~~~h~~~--~vv~---~------~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~-~~i~ 144 (702)
|..++.++.|..+|..+....+...... .+.. + ..+ .+..+++++.|+.|.-.|.. |...- ..+.
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~ 149 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNG 149 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence 4556667889999988855544332211 0100 0 111 12456667777777666664 43321 2111
Q ss_pred CCc--cceEEec--CCCcEEEEec------CCCEEEEECCCCeEEEEeecCCC---------------------------
Q 005325 145 RMG--RDMAYNS--WSCDLLCAAS------SPELYRINLEQGRFLSSLNTQSP--------------------------- 187 (702)
Q Consensus 145 ~~~--~~l~~~~--~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~--------------------------- 187 (702)
... ..+...| ....++++.. ++.|+.+|+++|+.+..+..-..
T Consensus 150 ~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~ 229 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWK 229 (527)
T ss_pred cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccc
Confidence 110 1111111 1223555543 56799999999998876533110
Q ss_pred ----Ce-EEEEEcCCCCEEEEEEcC-----C-----------eEEEEECCCCcceeEEecccCC---CCCCCCeEEEEEc
Q 005325 188 ----AL-NVVSRSKLHGLIACGGED-----G-----------AVECFDMRMRSSAARINAVAPA---GDADQEVTALEFD 243 (702)
Q Consensus 188 ----~V-~~l~~sp~~~llasgs~D-----G-----------~V~iWD~~t~~~v~~l~~~~~~---~~~~~~Vtslafs 243 (702)
.+ ..+++.|..++|..++.+ + +|...|+.|++..-.+...... .+......-+.+.
T Consensus 230 ~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~ 309 (527)
T TIGR03075 230 TGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK 309 (527)
T ss_pred cCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEec
Confidence 11 134666767777777632 2 6778888999887777654111 0111222333333
Q ss_pred CCCCC---EEEEEeCCCeEEEEEcCCCeEE
Q 005325 244 SNGGF---LMGVGSSTGKVLIYDLRSSYPI 270 (702)
Q Consensus 244 pd~g~---~LasGs~DG~V~lwDlrs~~~l 270 (702)
.+ |. .++.++.+|.+.+.|-++++++
T Consensus 310 ~~-G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KD-GKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cC-CcEEEEEEEeCCCceEEEEECCCCcee
Confidence 45 65 7889999999999999999886
No 394
>PRK10115 protease 2; Provisional
Probab=96.10 E-value=4.5 Score=48.07 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=102.4
Q ss_pred eEEEECCCCCEEEEEEecC-----CcEEEEEcCCc----eEEEeeecCCceEEEEEEcCCCCEEEEEEC---CCeEEEEe
Q 005325 66 TKIRETPDGEFLIVSGIYP-----PQVKVYELRQL----SLKFERHLDSEIINFEVLADDYSKLAFLCA---DRSISLHA 133 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~d-----g~I~vwdl~~~----~~~~~~h~~~~vv~~~~ls~dg~~Las~s~---D~~I~iw~ 133 (702)
..++|++|++.++.+...+ ..|.+|++.+. .+.+... +....-..+.+.|+.+++..+. +..+.+++
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 4589999999866665432 46788888773 2344432 2222323445657777654433 44677777
Q ss_pred cC---CceEEEecCCCccceEEecCCCcEEEEecCC----CEEEEECC-CCeEEEEeecC-C-CCeEEEEEcCCCCEEEE
Q 005325 134 KY---GKHYSLRIPRMGRDMAYNSWSCDLLCAASSP----ELYRINLE-QGRFLSSLNTQ-S-PALNVVSRSKLHGLIAC 203 (702)
Q Consensus 134 ~~---g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~----~V~vwdl~-~g~~~~~l~~h-~-~~V~~l~~sp~~~llas 203 (702)
.. +....+..........+..+...+++.+..+ .|...++. .++. ..+..+ . ..|..+.+. .+.++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~ 331 (686)
T PRK10115 254 AELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVE 331 (686)
T ss_pred CcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEE
Confidence 42 3322222222222233334444555555432 35556665 3332 333344 2 367788887 4467777
Q ss_pred EEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEc--CCCCCEEEEEe---CCCeEEEEEcCCCeEEE
Q 005325 204 GGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFD--SNGGFLMGVGS---STGKVLIYDLRSSYPIR 271 (702)
Q Consensus 204 gs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafs--pd~g~~LasGs---~DG~V~lwDlrs~~~l~ 271 (702)
...+|.-+++-+.. +..+..+.... ...+..+.++ ++++..+++.+ .-+.|..||+.+++...
T Consensus 332 ~~~~g~~~l~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~ 400 (686)
T PRK10115 332 ERQRGLTSLRQINRKTREVIGIAFDD-----PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRV 400 (686)
T ss_pred EEeCCEEEEEEEcCCCCceEEecCCC-----CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEE
Confidence 77788766655442 23344443210 1233334444 44123333333 24678888988765433
No 395
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=95.96 E-value=0.0067 Score=49.47 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=52.6
Q ss_pred cccCccccCHHHHhhcCCCcccC-cccccccccccccchHhHHHHHhhcCCchhHHHHHHH-HHHHHHHHhccccccc
Q 005325 380 IYDNYKFLTREDLEKLNLTSLIG-TNLLRAYMHGFFVDYRLYKKAKALVDPFAYESYIEEQ-KQKKLEQQRSSRITLK 455 (702)
Q Consensus 380 ~yd~ykfvt~~el~~l~l~~liG-t~~l~~ymhgy~~~~~ly~~~~~~~~p~~~~~~r~~~-i~~~~~~~~~~ri~~~ 455 (702)
...+.+|++.+|+ |++.|--| +++|.|-..--..|. ..+|||.-..+|+++ |+..|||.++..|++.
T Consensus 11 ~v~~~~F~PfEDv--LgvGh~~G~sSiiVPGsGe~NfDs-------~e~NP~et~kqRrE~EV~~LLeKippd~I~Ld 79 (80)
T PF08149_consen 11 PVESLRFCPFEDV--LGVGHSKGFSSIIVPGSGEPNFDS-------LEANPFETKKQRREREVRSLLEKIPPDMITLD 79 (80)
T ss_pred eeeeeEEechHHe--eEeeccCceeEEeccCCCCCCCCc-------ccCCcccchhHHhHHHHHHHHHhCCccceecC
Confidence 3456799999999 77777777 667777776655555 348999998887766 9999999999999864
No 396
>PHA03098 kelch-like protein; Provisional
Probab=95.94 E-value=0.34 Score=55.71 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=88.9
Q ss_pred EEEEEEecCC------cEEEEEcCCceEEEeeecCCc--eEEEEEEcCCCCEEEEEECC-----CeEEEEecCCceEE-E
Q 005325 76 FLIVSGIYPP------QVKVYELRQLSLKFERHLDSE--IINFEVLADDYSKLAFLCAD-----RSISLHAKYGKHYS-L 141 (702)
Q Consensus 76 ~llatGs~dg------~I~vwdl~~~~~~~~~h~~~~--vv~~~~ls~dg~~Las~s~D-----~~I~iw~~~g~~~~-~ 141 (702)
.|++.|+.++ .+.+||+.+............ ...++.+ ++..++.|+.+ ..+..|++...... .
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 4467776543 467788766332111111100 0122222 44666777765 34666776632222 1
Q ss_pred e-cCCCccceEEecCCCcEEEEec-C------CCEEEEECCCCeEEEE--eecCCCCeEEEEEcCCCCEEEEEEcC----
Q 005325 142 R-IPRMGRDMAYNSWSCDLLCAAS-S------PELYRINLEQGRFLSS--LNTQSPALNVVSRSKLHGLIACGGED---- 207 (702)
Q Consensus 142 ~-i~~~~~~l~~~~~s~~llv~s~-d------~~V~vwdl~~g~~~~~--l~~h~~~V~~l~~sp~~~llasgs~D---- 207 (702)
. +|......+.......+++.+. . +.+.+||+.+.+.... +....... +++. -++.+++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCC
Confidence 1 1111112222223445555433 1 3588899987754331 11111111 2222 245677777653
Q ss_pred ----CeEEEEECCCCccee--EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEE
Q 005325 208 ----GAVECFDMRMRSSAA--RINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 208 ----G~V~iWD~~t~~~v~--~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~ 272 (702)
..+.+||+.+.+-.. .+..+ ......+.+ + +..++.|+.+ ..|.+||+.+.....+
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~------r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFP------RINASLCIF--N-NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCcc------cccceEEEE--C-CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 238899998765322 11111 122222333 4 6677777654 4788999888765443
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.87 E-value=0.91 Score=46.84 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=96.1
Q ss_pred CeEEEEEcCCCCEEEEEE-cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cC
Q 005325 188 ALNVVSRSKLHGLIACGG-EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD-LR 265 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs-~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD-lr 265 (702)
.+.+.++++++..++... .++.-.||-...+.....+.. ...++.-.|+++ +...++...+....++- ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~-------g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT-------GGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc-------CCccccccccCC-CCEEEEEcCCCceEEEEecC
Confidence 688999999998777665 233334444444443333332 257889999999 88887777777777773 33
Q ss_pred CCe--EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe---CCCEEEEEeCC---CC------ceeEEecCCCCceeEEEE
Q 005325 266 SSY--PIRVKDHMFDSPIVDIKWHQSINTERPKLITT---DNHIVRIWDPE---TG------ESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 266 s~~--~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss---~Dg~V~IWd~~---tg------~~l~~i~~h~~~I~~v~~ 331 (702)
++. ++.+........|+.+.++| ++.++++.. .++.|.|=-+. .| .++.........+.++.|
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSp---DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSP---DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred CCcceeEEecccccCCceEEEEECC---CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 333 33322221122899999998 666666554 36777776543 23 122222233568999999
Q ss_pred EcCCCEEEEEeCCCc-EEEEEcCCCC
Q 005325 332 FKDSGLLLLALDCSQ-IPSYFIPDLG 356 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~-I~~~~ip~lg 356 (702)
.+++.+++.+...+. +.. ++...|
T Consensus 174 ~~~~~L~V~~~~~~~~~~~-~v~~dG 198 (253)
T PF10647_consen 174 SDDSTLVVLGRSAGGPVVR-LVSVDG 198 (253)
T ss_pred cCCCEEEEEeCCCCCceeE-EEEccC
Confidence 999988777765544 333 344444
No 398
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.86 E-value=3.8 Score=45.27 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=90.9
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEEC---C-CCCEEEE
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRET---P-DGEFLIV 79 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~S---p-DG~~lla 79 (702)
+++...++..+..+.++||.-+.. ..-|. .++-..++..+|..|..- + .....||
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~-~~~~~--------------------~lllE~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGN-EFQPE--------------------DLLLETQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCC-CCCCc--------------------cEEEEEecCCcEEEEEeccccCCCCcceEE
Confidence 344445677888888999998655 11111 234444455566555542 2 2222234
Q ss_pred EEecCCcEEEEEcCC------------ceEEEeeecCCceEEEEEEc---CC-CCEEEEEECCCeEEEEecCCceEEEec
Q 005325 80 SGIYPPQVKVYELRQ------------LSLKFERHLDSEIINFEVLA---DD-YSKLAFLCADRSISLHAKYGKHYSLRI 143 (702)
Q Consensus 80 tGs~dg~I~vwdl~~------------~~~~~~~h~~~~vv~~~~ls---~d-g~~Las~s~D~~I~iw~~~g~~~~~~i 143 (702)
. -....+.||.+.. +.+.++.+.......+++-. .. -..|+.-+.||.+.|++.....+...+
T Consensus 93 V-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l 171 (418)
T PF14727_consen 93 V-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL 171 (418)
T ss_pred E-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc
Confidence 3 6677888888722 23334444433334444322 22 245677788999999999988877777
Q ss_pred CCCcc--ceEEecCCCcEEEEecCCCEEEE
Q 005325 144 PRMGR--DMAYNSWSCDLLCAASSPELYRI 171 (702)
Q Consensus 144 ~~~~~--~l~~~~~s~~llv~s~d~~V~vw 171 (702)
|.+-- .+.|.+....+++++++..|..|
T Consensus 172 p~~llPgPl~Y~~~tDsfvt~sss~~l~~Y 201 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTDSFVTASSSWTLECY 201 (418)
T ss_pred CCCCCCcCeEEeecCCEEEEecCceeEEEe
Confidence 77443 89999998889999888877665
No 399
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.81 E-value=0.32 Score=55.28 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=45.2
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
..+++|.-+|.|+. ++.+.+|+.|.+|++..... .++.. .+...+++ .. .-|++...|+.+.-|.-.|
T Consensus 15 e~~~aiqshp~~~s-~v~~~~d~si~lfn~~~r~qski~~~~--~p~~nlv~-tn--hgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQS-FVLAHQDGSIILFNFIPRRQSKICEEA--KPKENLVF-TN--HGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred ceeeeeeecCCCce-EEEEecCCcEEEEeecccchhhhhhhc--CCccceee-ec--cceEEEeccchhheeeccC
Confidence 45677888899998 89999999999999876322 11111 11223332 22 3367778888888887665
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.74 E-value=1.6 Score=47.66 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=66.4
Q ss_pred EEEEECCCCeEEEEeecCC---CCeEEEEEcCCCCEEEEEEc--------------------CCeEEEEECCCCcceeEE
Q 005325 168 LYRINLEQGRFLSSLNTQS---PALNVVSRSKLHGLIACGGE--------------------DGAVECFDMRMRSSAARI 224 (702)
Q Consensus 168 V~vwdl~~g~~~~~l~~h~---~~V~~l~~sp~~~llasgs~--------------------DG~V~iWD~~t~~~v~~l 224 (702)
+.++|-++......+.... ..-..+-|.|.++.++|... ..+|.+||+.+++.++++
T Consensus 159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 4455555555544443322 23446667888888887542 357999999999999999
Q ss_pred ecccCCCCCCCCeEEEEEc--CCCCCE-EEEEeCCCeEEEEEc-CCCeE-----EEEeec---cC------------CCC
Q 005325 225 NAVAPAGDADQEVTALEFD--SNGGFL-MGVGSSTGKVLIYDL-RSSYP-----IRVKDH---MF------------DSP 280 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafs--pd~g~~-LasGs~DG~V~lwDl-rs~~~-----l~~~~h---~~------------~~~ 280 (702)
.... ....+.-|.|. |+ ..+ |+.+....+|..|-- ..+.. +.+..- .. ..-
T Consensus 239 dLg~----~g~~pLEvRflH~P~-~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 239 DLGE----EGQMPLEVRFLHDPD-ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp ES-T----TEEEEEEEEE-SSTT---EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred ecCC----CCCceEEEEecCCCC-ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 9871 11234566664 44 333 333334445544433 44432 112110 00 123
Q ss_pred eEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC
Q 005325 281 IVDIKWHQSINTERPKLITT-DNHIVRIWDPET 312 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t 312 (702)
|+.|..|. ++.+|.+++ ..|.|+.||+..
T Consensus 314 itDI~iSl---DDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 314 ITDILISL---DDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ---EEE-T---TS-EEEEEETTTTEEEEEE-SS
T ss_pred eEeEEEcc---CCCEEEEEcccCCcEEEEecCC
Confidence 78888885 667777777 599999999985
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.1 Score=61.99 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=73.7
Q ss_pred CEEEEECCCCeE-----EEEeecC------CCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCC-cceeEEecccCCCCC
Q 005325 167 ELYRINLEQGRF-----LSSLNTQ------SPALNVVSRSKLH-GLIACGGEDGAVECFDMRMR-SSAARINAVAPAGDA 233 (702)
Q Consensus 167 ~V~vwdl~~g~~-----~~~l~~h------~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~-~~v~~l~~~~~~~~~ 233 (702)
.|+.||+++-.. ...|..| ...+.|+.|+|.- -..+++..|+.|++.-+... ..+..+...
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t------ 198 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT------ 198 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc------
Confidence 477788765321 1222222 2346688899876 34566677899988877632 234444443
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec--cCCCCeEEEEEee
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH--MFDSPIVDIKWHQ 288 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h--~~~~~I~sl~fsp 288 (702)
..++|++|+|. |.++++|-..|++.-|-..-.....+... .....|.+|+|.-
T Consensus 199 -~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 199 -NSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred -cceeeEEeccc-cceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence 78999999999 99999999999999886543221111111 1125799999984
No 402
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.48 E-value=5.1 Score=44.13 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 189 LNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 189 V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
...+..++++.+++.|..-..++-||.-... -..+... ....++++.|.++ +..++++ ..|.|. |....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~~-----~~~~l~~v~~~~d-g~l~l~g-~~G~l~-~S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-WQPHNRA-----SARRIQNMGWRAD-GGLWLLT-RGGGLY-VSKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-eEEecCC-----CccceeeeeEcCC-CCEEEEe-CCceEE-EecCCCC
Confidence 3445566777777776653333344432210 0111222 1367899999988 7776665 556544 3333333
Q ss_pred -----EEEEeecc-CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec---CCCCceeEEEEEcCCCEEE
Q 005325 269 -----PIRVKDHM-FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE---PTAGKINDVCVFKDSGLLL 339 (702)
Q Consensus 269 -----~l~~~~h~-~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~---~h~~~I~~v~~~p~~~~l~ 339 (702)
.+...... ....+.++.|.+ ++.+++++..|.|.+. ...|+...... .-..++..+.|.+++. .+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~----d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~ 385 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRS----KKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKK-GF 385 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcC----CCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCc-eE
Confidence 12222221 134689999985 7788999988877655 45677766654 2234788888876644 66
Q ss_pred EEeCCCcEEEE
Q 005325 340 LALDCSQIPSY 350 (702)
Q Consensus 340 ~a~~d~~I~~~ 350 (702)
+.+++|.|..|
T Consensus 386 ~~G~~G~il~~ 396 (398)
T PLN00033 386 VLGNDGVLLRY 396 (398)
T ss_pred EEeCCcEEEEe
Confidence 66777777665
No 403
>PRK10115 protease 2; Provisional
Probab=95.48 E-value=7.7 Score=46.12 Aligned_cols=209 Identities=7% Similarity=-0.010 Sum_probs=96.2
Q ss_pred CceeEEEECCCCCEEEEEEecCC----cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 63 TATTKIRETPDGEFLIVSGIYPP----QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg----~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
-.+..+.+||||++|+.+-..+| .|++.|+.+........... .....+++|+..|+....+..-
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~--------- 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVT--------- 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCC---------
Confidence 34667889999999655544444 47788886532111111111 1224445565555444432200
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCC--eEEEEeecCCCCeE-EEEEcCCCCEEEEEEc---CCeEEE
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG--RFLSSLNTQSPALN-VVSRSKLHGLIACGGE---DGAVEC 212 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~-~l~~sp~~~llasgs~---DG~V~i 212 (702)
.....|+++++.++ +-...+........ .+..+.++.+++..+. ++.+.+
T Consensus 196 ------------------------~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l 251 (686)
T PRK10115 196 ------------------------LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLL 251 (686)
T ss_pred ------------------------CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEE
Confidence 01134666777766 22223332222222 2223336655444443 456888
Q ss_pred EECC--CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCC-CeEEEEeeccCCCCeEEEE
Q 005325 213 FDMR--MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS----TGKVLIYDLRS-SYPIRVKDHMFDSPIVDIK 285 (702)
Q Consensus 213 WD~~--t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~----DG~V~lwDlrs-~~~l~~~~h~~~~~I~sl~ 285 (702)
|+.. ++.....+... ......+. +.. ..|..-+. ...|...++.. ++...+..+.....|..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~--~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~ 322 (686)
T PRK10115 252 LDAELADAEPFVFLPRR------KDHEYSLD-HYQ--HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT 322 (686)
T ss_pred EECcCCCCCceEEEECC------CCCEEEEE-eCC--CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEE
Confidence 8853 33322222222 12223332 222 23333222 23455555552 3333344442234788888
Q ss_pred EeeccCCCCCeEEEe-CCCEEEEEeCCC-CceeEEec
Q 005325 286 WHQSINTERPKLITT-DNHIVRIWDPET-GESMTSIE 320 (702)
Q Consensus 286 fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g~~l~~i~ 320 (702)
++ ...++++. .++.-+||-+.. +..+..+.
T Consensus 323 ~~-----~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 323 LF-----TDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred EE-----CCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 87 44566555 466555544332 33344443
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.41 E-value=0.83 Score=52.89 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=54.8
Q ss_pred CEEEEECCCCeEE--EEeecCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEECCCCcc--eeEEecccCCCCCCCC
Q 005325 167 ELYRINLEQGRFL--SSLNTQSPALNVVSRSKLHGLIACGGED------GAVECFDMRMRSS--AARINAVAPAGDADQE 236 (702)
Q Consensus 167 ~V~vwdl~~g~~~--~~l~~h~~~V~~l~~sp~~~llasgs~D------G~V~iWD~~t~~~--v~~l~~~~~~~~~~~~ 236 (702)
.|-.||..+.+.- .++.........+.+ .+.+.++|+.+ .+|.+||+.+..- +..+... ...
T Consensus 397 svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~------R~~ 468 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR------RSG 468 (571)
T ss_pred cEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc------ccc
Confidence 4666777665432 222221112222222 56788888854 4578999997653 2223222 222
Q ss_pred eEEEEEcCCCCCEEEEEeCCCe-----EEEEEcCCCeEEEE
Q 005325 237 VTALEFDSNGGFLMGVGSSTGK-----VLIYDLRSSYPIRV 272 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~-----V~lwDlrs~~~l~~ 272 (702)
.. ++.- ++.+.++|+.|+. |..||..+.+...+
T Consensus 469 ~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 469 FG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 33 3333 2788889988873 78899998876664
No 405
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.19 E-value=0.013 Score=60.37 Aligned_cols=23 Identities=57% Similarity=0.986 Sum_probs=16.0
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCC
Q 005325 680 GSQGRGGR---GRGGYRGRARRGGRR 702 (702)
Q Consensus 680 ~~~~~~~~---~~~~~~~~~~~~~~~ 702 (702)
|+||+++| ||||||||+||||++
T Consensus 357 g~Rgg~Gg~~gGrGgGRGggG~GGGg 382 (465)
T KOG3973|consen 357 GSRGGSGGNWGGRGGGRGGGGRGGGG 382 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44554444 888888888888864
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.14 E-value=0.055 Score=40.16 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
...|++++|+|. ..+||+|+.+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCc
Confidence 367999999999 999999999999999998 443
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.13 E-value=0.06 Score=53.24 Aligned_cols=106 Identities=12% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccC
Q 005325 198 HGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMF 277 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~ 277 (702)
+.-+++|+.+|.|.+|...-......+.+. ....|.++--.-+.+.+.++++.+|.|+.|++.-++.+-...|..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-----GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc-----ccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 367899999999999998732111111111 012333333222226789999999999999999888777655532
Q ss_pred CCCeEEEEEeeccCCCCCeEEE--eCCCEEEEEeCC
Q 005325 278 DSPIVDIKWHQSINTERPKLIT--TDNHIVRIWDPE 311 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~s--s~Dg~V~IWd~~ 311 (702)
..++..+..+. .+..+.++ +.|..++.|++.
T Consensus 145 ~~~~e~~ivv~---sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 145 FESGEELIVVG---SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCCcceeEEec---CCceEEeeccccchhhhhcchh
Confidence 24444443331 23333333 335555555544
No 408
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.98 E-value=0.0066 Score=68.35 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 005325 695 RARRGGR 701 (702)
Q Consensus 695 ~~~~~~~ 701 (702)
|||||++
T Consensus 546 g~grg~~ 552 (556)
T PF05918_consen 546 GRGRGRG 552 (556)
T ss_dssp -------
T ss_pred CCCCccc
Confidence 3344443
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.97 E-value=0.074 Score=39.47 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR 93 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~ 93 (702)
.++.+-..+..|++++|+|.... ||.|+.+|.|.||.++
T Consensus 3 ~~~~~k~l~~~v~~~~w~P~mdL-iA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 3 RQLGEKNLPSRVSCMSWCPTMDL-IALGTEDGEVLVYRLN 41 (47)
T ss_pred ceecccCCCCcEEEEEECCCCCE-EEEEECCCeEEEEECC
Confidence 34566667888999999999998 9999999999999884
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.95 E-value=0.53 Score=55.63 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------c---ceeEEeccc--CCCCCCCCeEEEEEcCCC--CCEEE
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMR---------S---SAARINAVA--PAGDADQEVTALEFDSNG--GFLMG 251 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~---------~---~v~~l~~~~--~~~~~~~~Vtslafspd~--g~~La 251 (702)
.|..|.+||+|.+|+..|..|.+.+.=++.. . ...++.... ........|..+.|+|.. +.+|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 6888999999999998888665544333321 1 111121111 112334677788888761 46777
Q ss_pred EEeCCCeEEEEEcC
Q 005325 252 VGSSTGKVLIYDLR 265 (702)
Q Consensus 252 sGs~DG~V~lwDlr 265 (702)
+=++|+++++||+.
T Consensus 166 vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 166 VLTSDNTLRLYDIS 179 (717)
T ss_pred EEecCCEEEEEecC
Confidence 77888888888874
No 411
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.026 Score=59.29 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=28.9
Q ss_pred CCCCChhhhhccCCCCccccCCCHHHHHhCCCch
Q 005325 501 DVFKDERFAAMFENKDYQIDEFSQEYIALHPMAT 534 (702)
Q Consensus 501 ~~~~d~rf~~~f~~~~f~~d~~~~~~~~~~~~~~ 534 (702)
.-+.||||+++|+|.+|.||++..||+.---+..
T Consensus 538 ~D~~DpRF~aifedhnFaiDPT~PefK~t~~m~k 571 (622)
T COG5638 538 FDPKDPRFVAIFEDHNFAIDPTHPEFKKTGGMKK 571 (622)
T ss_pred cCCCCcchhhhcccCccccCCCCccccccccHHH
Confidence 3577999999999999999999999987655543
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.72 E-value=5.6 Score=47.56 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCEEEEECCCCeEEEEeecCCCC--------eEEEEEc----------------CCCCEEEEEEcCCeEE
Q 005325 156 SCDLLCAASSPELYRINLEQGRFLSSLNTQSPA--------LNVVSRS----------------KLHGLIACGGEDGAVE 211 (702)
Q Consensus 156 s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~--------V~~l~~s----------------p~~~llasgs~DG~V~ 211 (702)
...+++++.++.|+-+|..+|+.+..+...... ...+++. .....|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 345788888888999999999988877543321 1112221 1235788899999999
Q ss_pred EEECCCCcceeEEecccCC------CCCCCCeEEEEEcC--CCCCEEEEEeC----------CCeEEEEEcCCCeEEEEe
Q 005325 212 CFDMRMRSSAARINAVAPA------GDADQEVTALEFDS--NGGFLMGVGSS----------TGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~------~~~~~~Vtslafsp--d~g~~LasGs~----------DG~V~lwDlrs~~~l~~~ 273 (702)
..|..+++.+..+...... ......-..+.-.| . +..+++|+. +|.|+-||+++++.+...
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988776543100 00000000111111 1 235666643 689999999999988743
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=94.64 E-value=1.5 Score=49.68 Aligned_cols=182 Identities=9% Similarity=-0.043 Sum_probs=87.2
Q ss_pred CCEEEEEEecCC-----cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC--CeEEEEecCCc-eEEEe-cC
Q 005325 74 GEFLIVSGIYPP-----QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD--RSISLHAKYGK-HYSLR-IP 144 (702)
Q Consensus 74 G~~llatGs~dg-----~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D--~~I~iw~~~g~-~~~~~-i~ 144 (702)
+..|+++|+.++ .+..||..+............-..+....-++...+.|+.+ .++..|++... ...+. +|
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345578887643 46678876633211111111111111222344555666653 45777776532 22221 11
Q ss_pred CCccceEEecCCCcEEEE-ecC---CCEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 145 RMGRDMAYNSWSCDLLCA-ASS---PELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 145 ~~~~~l~~~~~s~~llv~-s~d---~~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
..-...+.....+.+++. +.+ ..+.+||+.+.+... ++....... +++ .-++.+.+.| |.+.+||+.+.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCC
Confidence 111122333334555544 433 346788888776543 221111111 222 2245666766 46889999876
Q ss_pred cce--eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeE
Q 005325 219 SSA--ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYP 269 (702)
Q Consensus 219 ~~v--~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~ 269 (702)
+-. ..+..+ ......+.+ + +...++|+.+ ..|.+||..+.+.
T Consensus 426 ~W~~~~~m~~~------r~~~~~~v~--~-~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 426 TWTLIDDPIYP------RDNPELIIV--D-NKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cEeEcCCCCCC------ccccEEEEE--C-CEEEEECCcCCCcccceEEEEECCCCeE
Confidence 432 222211 223333333 2 6778888754 3577777776554
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.60 E-value=1.1 Score=52.12 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred CeEEEEEcCCC--CEEEEEEcCCeEEEEECCC-------C-------------cceeEEecccCCCCCCCCeEEEEEc--
Q 005325 188 ALNVVSRSKLH--GLIACGGEDGAVECFDMRM-------R-------------SSAARINAVAPAGDADQEVTALEFD-- 243 (702)
Q Consensus 188 ~V~~l~~sp~~--~llasgs~DG~V~iWD~~t-------~-------------~~v~~l~~~~~~~~~~~~Vtslafs-- 243 (702)
.||.|.+..-+ .+|+.|.+||.|.+|.+.+ . ++...+.. ...+.+|+++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-------~~SaWGLdIh~~ 174 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-------GASAWGLDIHDY 174 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-------CCceeEEEEEec
Confidence 36666554333 7899999999999997631 0 01222222 3688999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCC--eEEEEeeccCCCCeEEEEEeeccCCC-CC-eEEEe-CCCEEEEEeC
Q 005325 244 SNGGFLMGVGSSTGKVLIYDLRSS--YPIRVKDHMFDSPIVDIKWHQSINTE-RP-KLITT-DNHIVRIWDP 310 (702)
Q Consensus 244 pd~g~~LasGs~DG~V~lwDlrs~--~~l~~~~h~~~~~I~sl~fsp~~~~~-~~-ll~ss-~Dg~V~IWd~ 310 (702)
.. ..+||+++....|.||-.... +......|.+...|-+|+|.+...+. +. .|+++ -.|.|.+|++
T Consensus 175 ~~-~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KK-SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Cc-ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77 789999999998988866542 22222344446689999999743211 22 44444 4888888877
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=4.7 Score=46.63 Aligned_cols=194 Identities=13% Similarity=0.147 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEE---ecCCCccc-eEEecCCCcE
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSL---RIPRMGRD-MAYNSWSCDL 159 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~---~i~~~~~~-l~~~~~s~~l 159 (702)
-+.|+||++....+.-.--...+++.+-| +.+ ..|+....+|++.+++..|..... ..+..... ..+-.+.+.+
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgW-s~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGW-SDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecc-cCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 35689999887433111111225566664 434 788899999999999988643322 22222221 1222222556
Q ss_pred EEEecCCCEEEEECCCCeEEEEeec---CCCCeEEEEEcCCCC----EEEEEEcCCeEEEEECCCC-cceeEEecccCCC
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNT---QSPALNVVSRSKLHG----LIACGGEDGAVECFDMRMR-SSAARINAVAPAG 231 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~---h~~~V~~l~~sp~~~----llasgs~DG~V~iWD~~t~-~~v~~l~~~~~~~ 231 (702)
++-..++.+++.+-...-.+..+.. ..-.-+|-...+.+. ++...-..+. .++-..+. .....+...
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~---- 215 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWP---- 215 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCC----
Confidence 6677777777664332222222221 111223333333331 1111101110 11111111 111111111
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEe
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWH 287 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fs 287 (702)
...+.-|..||+ ..+|+.-+.+|.|.+-++...+.+.........+-..++|.
T Consensus 216 --~~~~~ki~VS~n-~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 216 --NSSVVKISVSPN-RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred --CceEEEEEEcCC-cceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 367888999999 99999999999999998887776653322223444578887
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=7.7 Score=40.29 Aligned_cols=170 Identities=11% Similarity=0.174 Sum_probs=110.1
Q ss_pred ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 147 GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
..+++|++.+..|++......-.++=..+|+.+.++.... ...-.|.+...++++++--.++.+.++.+.....+..+.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 3489999999999999998888888777888888764421 234467777666666666668889888877654333222
Q ss_pred c---ccCCCCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEE---Eeecc-----CCCCeEEEEEeeccCC
Q 005325 226 A---VAPAGDA-DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIR---VKDHM-----FDSPIVDIKWHQSINT 292 (702)
Q Consensus 226 ~---~~~~~~~-~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~---~~~h~-----~~~~I~sl~fsp~~~~ 292 (702)
. ......+ +...-.++|+|. ...|.+.-.-.-+.||.+..+. .+. ..++. +-..|.++.|++ .+
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~--~~ 244 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA--IT 244 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC--CC
Confidence 2 1111122 567889999999 8888888888888888776432 221 11111 123477888987 33
Q ss_pred CCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 293 ERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 293 ~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
+..++++-.++.|.-.|.. |.++..+.
T Consensus 245 ~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred CcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 4445555567877777765 55554443
No 417
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.29 E-value=10 Score=41.69 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=95.0
Q ss_pred EEEEe-cCCCEEEEECCC----CeEEEEeec---CC----CCeEEEEEcCCCCEEEEEEc------CCeEEEEECCCCcc
Q 005325 159 LLCAA-SSPELYRINLEQ----GRFLSSLNT---QS----PALNVVSRSKLHGLIACGGE------DGAVECFDMRMRSS 220 (702)
Q Consensus 159 llv~s-~d~~V~vwdl~~----g~~~~~l~~---h~----~~V~~l~~sp~~~llasgs~------DG~V~iWD~~t~~~ 220 (702)
|++.+ .++.||++|+.+ -++.+.+.. +. +....+..-|+|.+++|+-. -|-+.+.|-.+...
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v 169 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV 169 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc
Confidence 56655 567799998873 455555543 11 12233444588888888643 25688888888777
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC--------------------CCeEEEEEcCCCeEEEEeeccCC-C
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS--------------------TGKVLIYDLRSSYPIRVKDHMFD-S 279 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~--------------------DG~V~lwDlrs~~~l~~~~h~~~-~ 279 (702)
........ .....-+.+-|.|. -+.+++... ..++.+||+.+.++++..+.... .
T Consensus 170 ~g~We~~~---~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 170 KGRWEKDR---GPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp EEE--SB----TT------EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cceeccCC---CCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77766541 11234456777887 677776532 35699999999999987766322 2
Q ss_pred CeEEEEEeeccCCCCCeEEEeCCCEEEEEeC-CCCc----eeEEecCC-----------------CCceeEEEEEcCCCE
Q 005325 280 PIVDIKWHQSINTERPKLITTDNHIVRIWDP-ETGE----SMTSIEPT-----------------AGKINDVCVFKDSGL 337 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~-~tg~----~l~~i~~h-----------------~~~I~~v~~~p~~~~ 337 (702)
-...|.|........-++.++-..+|..|-. ..++ .+..+.+- ..-|++|..+.|..+
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3567777652211222333444555555544 4432 23333321 235789999999998
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 005325 338 LLLAL-DCSQIPSYFIPD 354 (702)
Q Consensus 338 l~~a~-~d~~I~~~~ip~ 354 (702)
|.+++ ..|.|+.|.|..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 88776 588999999876
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=2.2 Score=41.91 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=108.5
Q ss_pred eeeecccCCCceeEEEEC-CCCCEEEEEEecC-CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEE-EECCCeEE
Q 005325 54 ELIQDLWFETATTKIRET-PDGEFLIVSGIYP-PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAF-LCADRSIS 130 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~S-pDG~~llatGs~d-g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las-~s~D~~I~ 130 (702)
+++..+.|.+....--.- -+|.++..||-+. ..|++||+.+....+....+.+-+-..-+..-+..+.. .-.++.-.
T Consensus 35 evi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf 114 (262)
T COG3823 35 EVIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAF 114 (262)
T ss_pred EEEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeE
Confidence 667777665543222221 2455545566554 36999999986665555544211111111111223322 23355555
Q ss_pred EEecCC--ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecC-----CCCeEEEEEcCCCCEEEE
Q 005325 131 LHAKYG--KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQ-----SPALNVVSRSKLHGLIAC 203 (702)
Q Consensus 131 iw~~~g--~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h-----~~~V~~l~~sp~~~llas 203 (702)
.+|... ..-.+..+..+..++....+ |+.+.....++.-|+++-....++... -..+|-+.|- +|.+.|-
T Consensus 115 ~~d~~t~~~lg~~~y~GeGWgLt~d~~~--LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyAN 191 (262)
T COG3823 115 KYDADTLEELGRFSYEGEGWGLTSDDKN--LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYAN 191 (262)
T ss_pred EEChHHhhhhcccccCCcceeeecCCcc--eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEe
Confidence 555542 23334445555555544333 666666666777787765544443321 1235556664 6667776
Q ss_pred EEcCCeEEEEECCCCcceeEEecccC------CCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAP------AGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~------~~~~~~~Vtslafspd~g~~LasG 253 (702)
.-.+..|...|+.+++.+..+....- ...+..-.+.|++.|+.+.++++|
T Consensus 192 Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 192 VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66677888888999998888776521 123345678899999844556665
No 419
>PHA03098 kelch-like protein; Provisional
Probab=94.18 E-value=2.3 Score=48.86 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred CEEEEECCCCeEEEEeecCCCC-eEEEEEcCCCCEEEEEEcC------CeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 167 ELYRINLEQGRFLSSLNTQSPA-LNVVSRSKLHGLIACGGED------GAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~~~-V~~l~~sp~~~llasgs~D------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
.+.+||+.+.+....-...... -.+++. -++.+++.|+.+ ..|..||+.+.+-...-..+. ..... +
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~~~-~ 432 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----SHYGG-C 432 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc----cccCc-e
Confidence 4788898877643211111111 112222 256777777732 468899988754221111110 01112 2
Q ss_pred EEEcCCCCCEEEEEeCC--------CeEEEEEcCCCeEEEE
Q 005325 240 LEFDSNGGFLMGVGSST--------GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 240 lafspd~g~~LasGs~D--------G~V~lwDlrs~~~l~~ 272 (702)
++.. + +..+++|+.+ ..+.+||..+.+...+
T Consensus 433 ~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 433 AIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred EEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCceeeC
Confidence 3333 3 5666777643 2388999988765543
No 420
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.07 E-value=16 Score=43.85 Aligned_cols=158 Identities=13% Similarity=0.237 Sum_probs=91.0
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeE-------------EEEEcC--CCCEEEEEEc----------CCeEEE
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALN-------------VVSRSK--LHGLIACGGE----------DGAVEC 212 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~-------------~l~~sp--~~~llasgs~----------DG~V~i 212 (702)
.+++++.|+.|+-+|..+|+.+..|..+. .|. .+.-.| .+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 48889999999999999999987764321 111 011112 1356666653 689999
Q ss_pred EECCCCcceeEEecccCCCC-----------CCCCe-EEEEEcCCCCCEEEEEe------------------CCCeEEEE
Q 005325 213 FDMRMRSSAARINAVAPAGD-----------ADQEV-TALEFDSNGGFLMGVGS------------------STGKVLIY 262 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~-----------~~~~V-tslafspd~g~~LasGs------------------~DG~V~lw 262 (702)
+|..+++.+-.+....+... ....+ ..++++|. ..++..+. ..+.|.-.
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~-~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEK-LGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCC-CCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 99999998888764311000 00111 34566666 34444332 13456667
Q ss_pred EcCCCeEEEEeeccCCCCeEE---------EEEeeccCCCC----CeEEEeCCCEEEEEeCCCCceeEEecC
Q 005325 263 DLRSSYPIRVKDHMFDSPIVD---------IKWHQSINTER----PKLITTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 263 Dlrs~~~l~~~~h~~~~~I~s---------l~fsp~~~~~~----~ll~ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
|+.+++........+ ..++. +.+. ..++ .++.++.+|.+.+.|..+|+++..++.
T Consensus 420 D~~TGk~~W~~Q~~~-hD~WD~D~~~~p~L~d~~---~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 420 DATTGKERWVFQTVH-HDLWDMDVPAQPSLVDLP---DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred eCCCCceEEEecccC-CccccccccCCceEEeee---cCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 888887766322210 01111 1111 0023 344455689999999999998876554
No 421
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.73 E-value=12 Score=40.59 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=104.3
Q ss_pred EcCCCCEEEEEEC-CCeEEEE--ecCC-ceEEE-ecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC
Q 005325 113 LADDYSKLAFLCA-DRSISLH--AKYG-KHYSL-RIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS 186 (702)
Q Consensus 113 ls~dg~~Las~s~-D~~I~iw--~~~g-~~~~~-~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~ 186 (702)
+.+||++|++++. |+.-.+| ++.. ....+ ..+.... .....+.+..++....+..|+..|+.+.+....+....
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 5778888887766 5544444 5553 22222 2222212 45555666666666667789999999988766676666
Q ss_pred CCeEEEEEc--CCCCEEEEEEc----------------------CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEE
Q 005325 187 PALNVVSRS--KLHGLIACGGE----------------------DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEF 242 (702)
Q Consensus 187 ~~V~~l~~s--p~~~llasgs~----------------------DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslaf 242 (702)
..+-...|. .++.+++..-. ...|.--|+.+++.-..+... ..+..+.|
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-------~wlgH~~f 195 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-------DWLGHVQF 195 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-------S-EEEEEE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-------ccccCccc
Confidence 656545553 44455433211 123556677777755555544 78899999
Q ss_pred cCCCCCEEEEEeC---CC-eEEEEEcCC--CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-----CCCEEEEEeCC
Q 005325 243 DSNGGFLMGVGSS---TG-KVLIYDLRS--SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-----DNHIVRIWDPE 311 (702)
Q Consensus 243 spd~g~~LasGs~---DG-~V~lwDlrs--~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-----~Dg~V~IWd~~ 311 (702)
+|.+...|+-|-. +. .-+||=+++ .....+..+..+..+..=-|.| ++..+..-+ .+..|.-+|+.
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~---DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP---DGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T---TSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC---CCCEEEEEeecCCCCceEEEeeCCC
Confidence 9984555555433 22 136666554 2222233333233344445666 444444322 25567778888
Q ss_pred CCceeEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 312 TGESMTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 312 tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
+++.....+. + ....+-.++++.+++-=+.+.
T Consensus 273 t~~~~~~~~~-p-~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 273 TGERRRLMEM-P-WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred CCCceEEEeC-C-ceeeeEEcCCCCEEEecCCCC
Confidence 8765432222 2 334555567777655544443
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.42 E-value=9.5 Score=38.31 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCC-EEEEEEcCCeEEEEE--CCCCc-----ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 005325 187 PALNVVSRSKLHG-LIACGGEDGAVECFD--MRMRS-----SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK 258 (702)
Q Consensus 187 ~~V~~l~~sp~~~-llasgs~DG~V~iWD--~~t~~-----~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~ 258 (702)
..-+.++|+.++. +.++-+.+-+|.-|| ..++. .+..+....+. .....-.+++..+ |.+.++.-..|+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~--e~~~PDGm~ID~e-G~L~Va~~ng~~ 234 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF--ESLEPDGMTIDTE-GNLYVATFNGGT 234 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc--CCCCCCcceEccC-CcEEEEEecCcE
Confidence 4457888987774 445566688888888 44443 33333332111 0122234555666 888888899999
Q ss_pred EEEEEcCCCeEEEEeeccCCCCeEEEEEe
Q 005325 259 VLIYDLRSSYPIRVKDHMFDSPIVDIKWH 287 (702)
Q Consensus 259 V~lwDlrs~~~l~~~~h~~~~~I~sl~fs 287 (702)
|...|..+++.+...... ...|+++||-
T Consensus 235 V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred EEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 999999999988733222 5689999997
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=93.30 E-value=3.5 Score=46.76 Aligned_cols=104 Identities=16% Similarity=0.044 Sum_probs=55.1
Q ss_pred CCCcEEEEecC---CCEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEECCCCccee--EE
Q 005325 155 WSCDLLCAASS---PELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGGED---GAVECFDMRMRSSAA--RI 224 (702)
Q Consensus 155 ~s~~llv~s~d---~~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs~D---G~V~iWD~~t~~~v~--~l 224 (702)
.+..+++.+.. ..+..||+.+++... ++....... +++ .-++.+.+.|+.+ .++.+||+.+.+-.. .+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 34455544432 358889987765432 222111111 222 2256788888765 358899998754322 11
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
..+ ......+++ + +...++| |.+.+||..+++...+
T Consensus 395 ~~~------r~~~~~~~~--~-~~IYv~G---G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 395 YYP------HYKSCALVF--G-RRLFLVG---RNAEFYCESSNTWTLI 430 (480)
T ss_pred CCc------cccceEEEE--C-CEEEEEC---CceEEecCCCCcEeEc
Confidence 111 122222333 3 6666776 4578899988765543
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=4.4 Score=46.89 Aligned_cols=170 Identities=13% Similarity=0.108 Sum_probs=90.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEE-----eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKF-----ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~-----~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
.+-.+.||.+... ++-..+|+++||++....... +.. ...|+.+.++. + -++....+|.+.+-+-.+..
T Consensus 85 ~lI~mgWs~~eeL--I~v~k~g~v~Vy~~~ge~ie~~svg~e~~-~~~I~ec~~f~-~--GVavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEEL--ICVQKDGTVHVYGLLGEFIESNSVGFESQ-MSDIVECRFFH-N--GVAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceE--EEEeccceEEEeecchhhhcccccccccc-cCceeEEEEec-C--ceEEEecCCcEEEEcCCCcc
Confidence 5567889988876 444678999999987632222 222 34466666666 3 35555555555543322221
Q ss_pred EEEecCC-Ccc-----ceEEecCC--CcEE-EEe--cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 139 YSLRIPR-MGR-----DMAYNSWS--CDLL-CAA--SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 139 ~~~~i~~-~~~-----~l~~~~~s--~~ll-v~s--~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
.....|. ... +....++. ..++ -.. ....++.-+....+... +....+.+..+.++|++.+|+-=+..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecC
Confidence 1112222 111 11122111 1111 110 01112212222222221 11122457788999999999999999
Q ss_pred CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 208 GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
|.|.+-+....+....+.+.. ..+.-.++|.-+
T Consensus 238 G~i~~vs~D~~~~lce~~~~~-----~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 238 GKIWVVSIDLSQILCEFNCTD-----HDPPKQMAWCGN 270 (829)
T ss_pred CcEEEEecchhhhhhccCCCC-----CCchHhceeecC
Confidence 999999998888888887652 133336777644
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.05 E-value=4.7 Score=45.48 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred ccceEEecC----CCcEEEEecCCCEEEEECC-----CCeEEEEeecCCC---C--eEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 147 GRDMAYNSW----SCDLLCAASSPELYRINLE-----QGRFLSSLNTQSP---A--LNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 147 ~~~l~~~~~----s~~llv~s~d~~V~vwdl~-----~g~~~~~l~~h~~---~--V~~l~~sp~~~llasgs~DG~V~i 212 (702)
...+.|.|. .+.|++......|.+|-+. +++.+.+-..+-. + -..+.|+|...+|++-+....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 335666665 3348888888999999764 3444433332221 1 135679999988888777666567
Q ss_pred EECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC
Q 005325 213 FDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRS 266 (702)
Q Consensus 213 WD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs 266 (702)
++++.... ...+.. .+-|.|.||.+| |..|+++ ++.=+-+|||-..
T Consensus 139 ~sV~~d~srVkaDi~~-------~G~IhCACWT~D-G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKT-------SGLIHCACWTKD-GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeeeeCCceEEEeccC-------CceEEEEEecCc-CCEEEEEeCCeEEEEEecCch
Confidence 77774433 233333 488999999999 7776654 4455678898543
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=4.1 Score=48.78 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=122.2
Q ss_pred EECCCCCEEEEEEecCCcEEEEEcCCceE-----------EEeeecC-CceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 69 RETPDGEFLIVSGIYPPQVKVYELRQLSL-----------KFERHLD-SEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 69 ~~SpDG~~llatGs~dg~I~vwdl~~~~~-----------~~~~h~~-~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
++..-|+. +..|+++|.+.+|.+.+... .+..+.. .++..+..++. ..++..-.|+.|.++....
T Consensus 21 ~va~~~~~-l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~--~~~ll~l~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNH-LYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCAS--LELLLILSDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCE-EEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcch--hcchheecCCcceeeecCc
Confidence 34556777 88999999999999877321 1222222 22333333322 2233444566677765542
Q ss_pred ceE---EEecCCCcc-ceEEecCCCc----EEEEecCCC--EEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc
Q 005325 137 KHY---SLRIPRMGR-DMAYNSWSCD----LLCAASSPE--LYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 137 ~~~---~~~i~~~~~-~l~~~~~s~~----llv~s~d~~--V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~ 206 (702)
... ..++.+... +....+++.. .++.+.... .+.|+-+.+..+..--+-...+.+++|. +..+++|-.
T Consensus 98 ~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~ 175 (877)
T KOG2063|consen 98 LEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLK 175 (877)
T ss_pred ccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeec
Confidence 111 111111110 1111112211 222222222 3345554444333222222223333333 445555555
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe----EEEEeeccCCCCeE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY----PIRVKDHMFDSPIV 282 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~----~l~~~~h~~~~~I~ 282 (702)
+....+|...++.. ..+.... .+....-..|+-.++ +..+++| .|+...+-|+.... ++.+.. ...
T Consensus 176 ~~~~ii~~~~~~~~-~~~~~s~--~~~~s~~P~I~~l~~-~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~-----~P~ 245 (877)
T KOG2063|consen 176 KSYYIINNTSKGVG-PNLFPSS--MDNESRKPLIKSLSD-QSELLLG-KDNIGVVVDLNGIIAQRGTLVWSE-----VPL 245 (877)
T ss_pred ceeEEEecCCCccc-cceeeec--cccccCCCeEEEecC-CceEEEc-cCceEEEEecCCcccCCCceEecc-----cch
Confidence 44455555444421 1111110 000011123333344 5456665 66666666744322 222211 123
Q ss_pred EEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 283 DIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
++.+ ...++++-.++.|-||+..++.+++++.+ -..+..+ ++.+.+.+++++..+......+|
T Consensus 246 ~v~~------~~PYlIa~~~~~veI~s~~~~qlvQSI~~-~~~~~~l-~s~~~~i~~~~~~s~v~~L~p~~ 308 (877)
T KOG2063|consen 246 SVVV------ESPYLIALLDRSVEIRSKLDGQLVQSITP-LSNGRSL-LSAHNGIIFVASLSNVWILVPVS 308 (877)
T ss_pred hhcc------cCceEEEEccccEEEEeccCHHHhhcccc-cccccee-eecCCcEEEEEeccceEEEEecc
Confidence 3333 23466666667999999999999999854 3334444 44455777777766655555555
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=1 Score=53.91 Aligned_cols=147 Identities=11% Similarity=0.040 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCEEEEE--EcCCeEEEEECCCCccee-----EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 188 ALNVVSRSKLHGLIACG--GEDGAVECFDMRMRSSAA-----RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 188 ~V~~l~~sp~~~llasg--s~DG~V~iWD~~t~~~v~-----~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
.|..+.++++..+.++- +.+-.|..||+++...-. -|..+.........+.++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676444333 344479999998533111 11111111122356778999998666788889999999
Q ss_pred EEEcCCCeEEEEe-eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC----CCceeEEEEEcCC
Q 005325 261 IYDLRSSYPIRVK-DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT----AGKINDVCVFKDS 335 (702)
Q Consensus 261 lwDlrs~~~l~~~-~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h----~~~I~~v~~~p~~ 335 (702)
+.-+....+.... .. ...+++++|+| .+.+++++-..|++.-|... ++....|+.. ...|.+|+|....
T Consensus 182 V~~~~~~~~~v~s~p~--t~~~Tav~WSp---rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPV--TNSQTAVLWSP---RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCc--ccceeeEEecc---ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 9887765444322 22 56789999998 45666666678888877654 4444444331 3579999999876
Q ss_pred CEEEE
Q 005325 336 GLLLL 340 (702)
Q Consensus 336 ~~l~~ 340 (702)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 65554
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.92 E-value=1.5 Score=50.63 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=77.4
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec--CCceEEEEEEc-CCCCEEEEEECCCeEEEEecCCceEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL--DSEIINFEVLA-DDYSKLAFLCADRSISLHAKYGKHYSL 141 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~--~~~vv~~~~ls-~dg~~Las~s~D~~I~iw~~~g~~~~~ 141 (702)
++.+.-|.-++. .++.+....+.|||.....+.++... ...|.++-|.+ +|++.+++.+..+.|.++......+..
T Consensus 32 ~~li~gss~~k~-a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKI-AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcE-EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344555666666 44445566899999999777666665 67788888765 788999999999999998654321111
Q ss_pred ecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 142 RIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 142 ~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
..|.. ..|..+|+ ..++.| +|.+..|.++|.+++.++ +.+.|+|-.
T Consensus 111 ~~p~w-------------------~~i~~i~i------~~~T~h--~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSW-------------------APIRKIDI------SSHTPH--PIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCccc-------------------ceeEEEEe------ecCCCC--CccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11111 11222232 222333 688999999986665443 467887754
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.92 E-value=6.5 Score=40.80 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=102.5
Q ss_pred cCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEE
Q 005325 45 KNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLA 121 (702)
Q Consensus 45 ~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~La 121 (702)
..++|+-+++--.-......+.++.|+|+.+.|+++......|.=.++.. ..+.+.+-.+. -.+.++. ++.+.+
T Consensus 68 ~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp--E~Ieyig-~n~fvi 144 (316)
T COG3204 68 YLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP--ETIEYIG-GNQFVI 144 (316)
T ss_pred ccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCCh--hHeEEec-CCEEEE
Confidence 34555555554323344455999999999999777776666655444444 22233333333 3344444 335555
Q ss_pred EEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEEeecCCCCeEEEEEcCCCCE
Q 005325 122 FLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSSLNTQSPALNVVSRSKLHGL 200 (702)
Q Consensus 122 s~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h~~~V~~l~~sp~~~l 200 (702)
+--.++.+.++.+.. +..+... ..-+ .+..........-.++|.|....
T Consensus 145 ~dER~~~l~~~~vd~----------------------------~t~~~~~--~~~~i~L~~~~k~N~GfEGlA~d~~~~~ 194 (316)
T COG3204 145 VDERDRALYLFTVDA----------------------------DTTVISA--KVQKIPLGTTNKKNKGFEGLAWDPVDHR 194 (316)
T ss_pred EehhcceEEEEEEcC----------------------------CccEEec--cceEEeccccCCCCcCceeeecCCCCce
Confidence 555566666544331 1111111 1100 01111111345678999999888
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCC--CC----CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPA--GD----ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~--~~----~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs 266 (702)
|..+-+-.-+.||.+.... ..+..+... .. .-..|.++.|++..+.+|+.+..++.|.-.|+..
T Consensus 195 l~~aKEr~P~~I~~~~~~~--~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 195 LFVAKERNPIGIFEVTQSP--SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EEEEEccCCcEEEEEecCC--cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 8887777777777665222 111111000 00 0246788899987678888888888888888654
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.76 E-value=5.9 Score=39.73 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=59.5
Q ss_pred ceEEecCCCcE-EEEecCCCEEEEE--CCCCeEEE-----Eeec----CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 149 DMAYNSWSCDL-LCAASSPELYRIN--LEQGRFLS-----SLNT----QSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 149 ~l~~~~~s~~l-lv~s~d~~V~vwd--l~~g~~~~-----~l~~----h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
.+.|......+ ++-+.+-+|.-|| ..+|.... .+.. .....-.+++...|++.+++-..|+|...|+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 44555433334 3444555675554 77765432 1211 11122234456678999999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEc
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
+++.+..+..+ ...|+|+||-
T Consensus 242 tGK~L~eiklP------t~qitsccFg 262 (310)
T KOG4499|consen 242 TGKILLEIKLP------TPQITSCCFG 262 (310)
T ss_pred CCcEEEEEEcC------CCceEEEEec
Confidence 99999999998 6899999996
No 431
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.055 Score=59.68 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.3
Q ss_pred ccCCCCChhhhhccCCCCccccCCCHHHHHh
Q 005325 499 SSDVFKDERFAAMFENKDYQIDEFSQEYIAL 529 (702)
Q Consensus 499 ~~~~~~d~rf~~~f~~~~f~~d~~~~~~~~~ 529 (702)
....|.|+||++||+++.|.||+++..|+.-
T Consensus 560 e~~~l~D~RFsAlftsh~yaiDPt~p~FK~t 590 (650)
T KOG2318|consen 560 EEANLNDPRFSALFTSHAYAIDPTDPHFKGT 590 (650)
T ss_pred cccccccHHHHHHhcccccccCCCCccccch
Confidence 3457899999999999999999999988754
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=3.5 Score=44.99 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--Eeecc-CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHM-FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~-~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
.++|.+|.||+| ...||+--.+..|.+++....++.. ...|. ....|...+|+. ...++...+.| |-+|-+
T Consensus 66 ~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~----s~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS----STEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec----CeeEEEEecCC-eEEEEE
Confidence 579999999999 9999999999999999986555443 22222 234599999984 44455444444 667766
Q ss_pred CC-CceeEEecCCCCceeEEEEEcCCCEEEEEeC
Q 005325 311 ET-GESMTSIEPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 311 ~t-g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
.. ...+..++.|+..|+-..|+++..+++.++.
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 54 3455667778889999999999887776654
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.53 E-value=0.37 Score=34.82 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCC--CEEEEEeCCCeEEEEEcCC
Q 005325 235 QEVTALEFDSNGG--FLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 235 ~~Vtslafspd~g--~~LasGs~DG~V~lwDlrs 266 (702)
+.|.++.|+|..+ .+|+..-..|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998745 6888888899999999996
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=5.5 Score=39.27 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=95.8
Q ss_pred CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 166 PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
..|++||+.+|+.+.+-......+..=-+..-+. +.+-.-.+|.-..+|.++.+++..+... +.-..++..
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-------GeGWgLt~d- 139 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-------GEGWGLTSD- 139 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-------CcceeeecC-
Confidence 3588999999988776544322221111111222 2233345788999999999988888776 556667665
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCe---EEEEeeccCCCCe---EEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeE
Q 005325 245 NGGFLMGVGSSTGKVLIYDLRSSY---PIRVKDHMFDSPI---VDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMT 317 (702)
Q Consensus 245 d~g~~LasGs~DG~V~lwDlrs~~---~l~~~~h~~~~~I---~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~ 317 (702)
+..|+.+....++..-|..+.. .+.+... +.|| +.+.|. ++.+.+-- -...|-..+..+|+.+.
T Consensus 140 --~~~LimsdGsatL~frdP~tfa~~~~v~VT~~--g~pv~~LNELE~V-----dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 140 --DKNLIMSDGSATLQFRDPKTFAELDTVQVTDD--GVPVSKLNELEWV-----DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred --CcceEeeCCceEEEecCHHHhhhcceEEEEEC--Ceecccccceeee-----ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4456666666667766766533 2223332 4454 455676 45555544 24445556778888776
Q ss_pred EecC------------CCCceeEEEEEcCCCEEEEE
Q 005325 318 SIEP------------TAGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 318 ~i~~------------h~~~I~~v~~~p~~~~l~~a 341 (702)
.|.. |....|.+++.|..+.+++.
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 6532 34467889999977544443
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=2.8 Score=46.46 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
.|..|..++.|..++-.+.+|.+.++=++....-..+... ...|+|=.|.-+ ..|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDg------k~~v~CRt~~i~--~~~ftss------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDG------KSTVNCRTTPVA--ERFFTSS------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCC------CceEEEEeeccc--ceeeccC-------------
Confidence 5778889999999999999998777655544334444433 345666555533 3333321
Q ss_pred eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe
Q 005325 268 YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 268 ~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i 319 (702)
. ...+..++|||..-.+..+++-++|++|+|||......++..
T Consensus 164 ------~---~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 ------T---SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred ------C---ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 1 235567788884434678888888999999998865554433
No 436
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.12 E-value=1.9 Score=49.83 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=116.4
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
|+.|.|=..++.+.|+-++-- +++..+|++ .....+...+..+..|+..+ +|.|...++....++.|.+++..
T Consensus 70 l~s~~hf~~~~~~~f~~~~gD-ii~~~~dp~-----p~e~~~eivG~v~nGIvaa~-wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 70 LLSFKHFHVLTFEYFLIDEGD-IIHLVNDPT-----PAELEMEIVGKVSNGIVAAS-WSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred hhhhhhhhhhheeeEEecCCc-EEEEEcCCC-----cccchhhhhccccCceEEEe-eccCCceEEEEEcCceEEEEecc
Confidence 455556666777778776655 455556654 12233334444444445444 66777878888888888887643
Q ss_pred -C----------------ceEEEecCC--------Ccc------ceEEecCCCcEEEEecCCCEEEE--ECCC-------
Q 005325 136 -G----------------KHYSLRIPR--------MGR------DMAYNSWSCDLLCAASSPELYRI--NLEQ------- 175 (702)
Q Consensus 136 -g----------------~~~~~~i~~--------~~~------~l~~~~~s~~llv~s~d~~V~vw--dl~~------- 175 (702)
. .+..+...+ ..+ .+-+.-..+++........+..| |.+-
T Consensus 143 fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~E 222 (1243)
T COG5290 143 FDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSE 222 (1243)
T ss_pred ccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchh
Confidence 1 111111110 000 22333344556666666667777 3211
Q ss_pred -C--eEEEEee--c----CCCCe----EEEEEcCCCCEEEEEEcCC-----eEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 176 -G--RFLSSLN--T----QSPAL----NVVSRSKLHGLIACGGEDG-----AVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 176 -g--~~~~~l~--~----h~~~V----~~l~~sp~~~llasgs~DG-----~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
+ +..+.+. + -+.++ ..++|-|+|..+++-..|| .|.++... |-.-..+... ......+
T Consensus 223 e~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr---~~~dEk~ 298 (1243)
T COG5290 223 ERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLR---VGCDEKA 298 (1243)
T ss_pred cccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCcccc---CCchhhh
Confidence 0 1111121 1 11122 3478999999999877554 35555433 2222222111 0113567
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
..++|+-. ...+++ ...+.|.+|-..+-....-... +-..|.-+.|||
T Consensus 299 ~~~~wn~~-s~vlav-~~~n~~~lwttkNyhWYLK~e~-~ip~~s~vkwhp 346 (1243)
T COG5290 299 FLENWNLL-STVLAV-AEGNLLKLWTTKNYHWYLKVER-QIPGISYVKWHP 346 (1243)
T ss_pred hhhhhhHH-HHHHHH-hhcceEEEEEccceEEEEEEee-cCCCcceeeecc
Confidence 77888766 444544 4567899998877655432222 234567788998
No 437
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.02 E-value=26 Score=39.92 Aligned_cols=239 Identities=20% Similarity=0.197 Sum_probs=109.4
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------ceEEEeee--cCCceEEEEEEc----CCCCEEEEEEC--CCe
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------LSLKFERH--LDSEIINFEVLA----DDYSKLAFLCA--DRS 128 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------~~~~~~~h--~~~~vv~~~~ls----~dg~~Las~s~--D~~ 128 (702)
.-..+++.|.|+. ++...+.+.+.||-+.. ....+... ....+.+++++. .+...++..-. .+.
T Consensus 45 ~G~~l~vDP~~R~-i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 45 PGQYLAVDPSGRC-IAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp T--EEEE-TTSSE-EEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred CCcEEEECCcCCE-EEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 3457899999999 88889999999999877 11122122 256678888886 12234443322 222
Q ss_pred --EEE--EecC-CceEE-----Ee--cCC---CccceEEecC-CCcEEEEecCCCEEEEECCC--C-eEEEEeec----C
Q 005325 129 --ISL--HAKY-GKHYS-----LR--IPR---MGRDMAYNSW-SCDLLCAASSPELYRINLEQ--G-RFLSSLNT----Q 185 (702)
Q Consensus 129 --I~i--w~~~-g~~~~-----~~--i~~---~~~~l~~~~~-s~~llv~s~d~~V~vwdl~~--g-~~~~~l~~----h 185 (702)
+.+ |+.. +.... .. ++. ...-+.-.+. .+-+++++. +-++.-+... + .....+.. .
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~~~ 202 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPSSS 202 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-SEEEEEE------TTEEEEE--H-HHH
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-EEEEEecccccccccccccccCCccCC
Confidence 222 3232 11100 00 100 0112222333 223454443 3333332211 1 11112211 1
Q ss_pred CCCeEEEEE-------cCCCCEEEEEEcCCeEEEEECCCCc---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC
Q 005325 186 SPALNVVSR-------SKLHGLIACGGEDGAVECFDMRMRS---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS 255 (702)
Q Consensus 186 ~~~V~~l~~-------sp~~~llasgs~DG~V~iWD~~t~~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~ 255 (702)
..-+.+.++ ..++..++.+..+|.+....+.... .+..+... ....+++++..+++.+|++|+.
T Consensus 203 ~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~------~~~~s~l~~l~~g~d~lf~gs~ 276 (504)
T PF10433_consen 203 SSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTL------CSIASSLTYLKNGGDYLFVGSE 276 (504)
T ss_dssp TS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--------S-ESEEEEESTT--EEEEEES
T ss_pred CceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCc------CChhheEEEEcCCCEEEEEEEe
Confidence 233444433 3455788889999999888776433 23333220 1456788887662247778877
Q ss_pred CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC-------CeEEEe---CCCEEEEEeC
Q 005325 256 TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER-------PKLITT---DNHIVRIWDP 310 (702)
Q Consensus 256 DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~-------~ll~ss---~Dg~V~IWd~ 310 (702)
-|.=.++-+....+..+....+-+||..++..+....+. .+++++ .+|.+++..-
T Consensus 277 ~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 277 FGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp SS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred cCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 665555554443333332233357999999975321122 556654 3889998753
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.86 E-value=2.5 Score=46.60 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=92.2
Q ss_pred ceEEecCCCcEEE-EecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-------CEEEEEEcCCeEEEEECCCCc-
Q 005325 149 DMAYNSWSCDLLC-AASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-------GLIACGGEDGAVECFDMRMRS- 219 (702)
Q Consensus 149 ~l~~~~~s~~llv-~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-------~llasgs~DG~V~iWD~~t~~- 219 (702)
.|.+...+.-++. ++....+|-.|++.|+.+..+..|... .+.|+|.. ..-++|-.+..|.-.|+|...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence 3444444444433 444567999999999999999998864 67788865 223456667778888888533
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-EEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-PIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
.+....... . .......|..-.. ..++|+++..|.|++||--.-. ...+.+. +..|..|..+. ++..+++
T Consensus 550 Ki~v~esKd-Y-~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta---~Gk~ila 620 (776)
T COG5167 550 KIKVVESKD-Y-KTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTA---NGKHILA 620 (776)
T ss_pred ceeeeeehh-c-ccccccccccccc--CceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeec---CCcEEEE
Confidence 333222220 0 0012223333332 4589999999999999943221 1223333 67888888884 5556666
Q ss_pred EeCCCEEEEEeCC
Q 005325 299 TTDNHIVRIWDPE 311 (702)
Q Consensus 299 ss~Dg~V~IWd~~ 311 (702)
+|. ..|-+-|+.
T Consensus 621 TCk-~yllL~d~~ 632 (776)
T COG5167 621 TCK-NYLLLTDVP 632 (776)
T ss_pred eec-ceEEEEecc
Confidence 664 566677764
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.74 E-value=3.8 Score=47.42 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC---
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE--- 311 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~--- 311 (702)
..++-+.-+.- +...++.+....+.|||.+.+............+|..+.|..+. ++..+++.|-.+.|.++.-.
T Consensus 30 ~~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence 34444544444 45555555556899999999885542222236799999998633 56667777878888887542
Q ss_pred --C----CceeEEe--cCCC-CceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 312 --T----GESMTSI--EPTA-GKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 312 --t----g~~l~~i--~~h~-~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
. ..++..+ ..|+ .+|.+.+|.+++.+++.++ .++.+|
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~ 153 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVF 153 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEE
Confidence 1 1233332 2333 5899999999987665554 455555
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.65 E-value=23 Score=38.56 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=111.0
Q ss_pred EEEEc---CCCCEEEEEECCCeEEEEecCCceEEEecCC-Cc-cceEEec-CCC---cEEEEecC----CCEEEE--ECC
Q 005325 110 FEVLA---DDYSKLAFLCADRSISLHAKYGKHYSLRIPR-MG-RDMAYNS-WSC---DLLCAASS----PELYRI--NLE 174 (702)
Q Consensus 110 ~~~ls---~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~-~~-~~l~~~~-~s~---~llv~s~d----~~V~vw--dl~ 174 (702)
.+|++ |.-+.++.....+-+.+|++.|......-.. .. .++.+.. .+. +|++++.- +.|.+| |..
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~ 137 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD 137 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC
Confidence 44554 3446777778888899999998765432111 11 1555432 122 35566542 345555 655
Q ss_pred CCeEEEEeec-------CCCCeEEEEE--cCC-CC-EEEEEEcCCeEEEEECC---CC----cceeEEecccCCCCCCCC
Q 005325 175 QGRFLSSLNT-------QSPALNVVSR--SKL-HG-LIACGGEDGAVECFDMR---MR----SSAARINAVAPAGDADQE 236 (702)
Q Consensus 175 ~g~~~~~l~~-------h~~~V~~l~~--sp~-~~-llasgs~DG~V~iWD~~---t~----~~v~~l~~~~~~~~~~~~ 236 (702)
++.+ ..+.. ....+..+|+ +|. +. ++++...+|.+.-|-+. .+ +.+..|... ..
T Consensus 138 ~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-------sQ 209 (381)
T PF02333_consen 138 TGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-------SQ 209 (381)
T ss_dssp TTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-------S-
T ss_pred CCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-------Cc
Confidence 6654 33221 2234666665 443 43 55666778998877764 23 357777776 68
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-----eEEEEe-eccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEe
Q 005325 237 VTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-----YPIRVK-DHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWD 309 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~DG~V~lwDlrs~-----~~l~~~-~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd 309 (702)
+..|..+.. ...|.+|-.+--|.-|+.... ..+... +......|-.|+........++||+|+ .+++..||+
T Consensus 210 ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 210 PEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ceEEEEecc-cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 999999988 889999999988888887631 222221 111245678888764222345777777 588999999
Q ss_pred CCC
Q 005325 310 PET 312 (702)
Q Consensus 310 ~~t 312 (702)
...
T Consensus 289 r~~ 291 (381)
T PF02333_consen 289 REG 291 (381)
T ss_dssp SST
T ss_pred cCC
Confidence 874
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.63 E-value=5.6 Score=36.44 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCC--------eEEEEeeccCCCCeEEEEEeecc-CCCCCeEEEeCCCEEEEE
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSS--------YPIRVKDHMFDSPIVDIKWHQSI-NTERPKLITTDNHIVRIW 308 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~--------~~l~~~~h~~~~~I~sl~fsp~~-~~~~~ll~ss~Dg~V~IW 308 (702)
+.-.|... ...|++++..|.|.|++.... .++.+..- +..|++|+-.|-. .....+|+-+....|-+|
T Consensus 2 aiGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred eEEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 44567666 668999999999999987643 23344333 5678888755421 345667777777889999
Q ss_pred eCCCCceeEEecCCCCceeEEEEEc
Q 005325 309 DPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 309 d~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
|+....-+..-+. +..|+++.+-.
T Consensus 79 DV~~N~d~Fyke~-~DGvn~i~~g~ 102 (136)
T PF14781_consen 79 DVENNSDLFYKEV-PDGVNAIVIGK 102 (136)
T ss_pred EcccCchhhhhhC-ccceeEEEEEe
Confidence 9987665555555 56788887643
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.59 E-value=10 Score=41.35 Aligned_cols=143 Identities=11% Similarity=0.038 Sum_probs=77.0
Q ss_pred CeEEEEEcCCCCEEEEEE-----------cCC-eEEEEECCCC--cc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 188 ALNVVSRSKLHGLIACGG-----------EDG-AVECFDMRMR--SS--AARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs-----------~DG-~V~iWD~~t~--~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
....|+|.++++++++-. ..+ .|.+++-..+ .. ...+... -...+.|+|.++ | |+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~------l~~p~Gi~~~~~-G--ly 85 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE------LSMVTGLAVAVG-G--VY 85 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC------CCCccceeEecC-C--EE
Confidence 466889999998887753 223 7777765432 21 2233222 245688999988 7 44
Q ss_pred EEeCCCeEEEEEcCC-----Ce--EEEE-eecc---CCCCeEEEEEeeccCCCCCeEEEeCC------------------
Q 005325 252 VGSSTGKVLIYDLRS-----SY--PIRV-KDHM---FDSPIVDIKWHQSINTERPKLITTDN------------------ 302 (702)
Q Consensus 252 sGs~DG~V~lwDlrs-----~~--~l~~-~~h~---~~~~I~sl~fsp~~~~~~~ll~ss~D------------------ 302 (702)
+++....+++.|... ++ .+.. .... +...+..++|.| ++.|.++-.+
T Consensus 86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp----DG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP----DGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC----CCCEEEecccCCCceeccCCCccCcccc
Confidence 444444334445432 12 2221 1110 123467899987 5555553221
Q ss_pred --CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 303 --HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 303 --g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
+.|.-++..+++......+ ....+.++|+|++.++++-+.+
T Consensus 162 ~~g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 3445555554443222222 3456789999988776654433
No 443
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.52 E-value=15 Score=40.06 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=88.4
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecC--CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCC-
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQ--SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDAD- 234 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h--~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~- 234 (702)
.++++..++.|+-+|..++..+.....- ...+++-.+..+| .|++++.+|.+.++|.++++.+...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~------~~ 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVG------GS 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecC------CC
Confidence 3566677778888888888866433222 1223322233344 4777888999999999999998888887 2
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCe-EEEEEeeccCCCCCeEEEeC--CCEEEEEeCC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPI-VDIKWHQSINTERPKLITTD--NHIVRIWDPE 311 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I-~sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~ 311 (702)
..+..-.+-.+ ..+..++.+|.+...|..++...+..... .++ ..+...|. ..++.++++.. ++.+.-.|..
T Consensus 143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~--~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETP--APLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecC--CccccccccCce-eecceEEEecCCCcceEEEEEcc
Confidence 11222222222 34444457899999998888887654431 110 01111111 12444555555 5567777777
Q ss_pred CCceeEEe
Q 005325 312 TGESMTSI 319 (702)
Q Consensus 312 tg~~l~~i 319 (702)
+|......
T Consensus 218 ~G~~~w~~ 225 (370)
T COG1520 218 DGTLKWSQ 225 (370)
T ss_pred CCcEeeee
Confidence 77776653
No 444
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.08 E-value=18 Score=41.05 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCC-----CEEEEEEcCCeEEEEECC-----CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 187 PALNVVSRSKLH-----GLIACGGEDGAVECFDMR-----MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 187 ~~V~~l~~sp~~-----~llasgs~DG~V~iWD~~-----t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
..|..++|.|-+ .+||+ .....|.+|.+. +.+.+..-.+... ..-.---..+.|+|. ...|++-+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk-~~iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPK-KAILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCC-CceEEEEecC
Confidence 468899999874 45555 556899999876 2233333222210 000112245789999 8888888877
Q ss_pred CeEEEEEcCCCe-EEE--EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCce----eE-EecCCCCcee
Q 005325 257 GKVLIYDLRSSY-PIR--VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGES----MT-SIEPTAGKIN 327 (702)
Q Consensus 257 G~V~lwDlrs~~-~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~----l~-~i~~h~~~I~ 327 (702)
..-.+++++... .+. +.. .+-|.|.+|.+ ++.+++++- +.=.-+|||-....+ +. .+.. .+.|.
T Consensus 134 dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~---DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv-~~~Ic 206 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKT---SGLIHCACWTK---DGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDV-GGYIC 206 (671)
T ss_pred ceeEeeeeeeCCceEEEeccC---CceEEEEEecC---cCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecC-CCceE
Confidence 776778887543 332 333 46899999997 666666554 444567898653211 11 1222 45666
Q ss_pred EEEEEcCCCEEEEEeC
Q 005325 328 DVCVFKDSGLLLLALD 343 (702)
Q Consensus 328 ~v~~~p~~~~l~~a~~ 343 (702)
+|.-.-+.. ++++++
T Consensus 207 si~AT~dsq-VAvaTE 221 (671)
T PF15390_consen 207 SIEATVDSQ-VAVATE 221 (671)
T ss_pred EEEEeccce-EEEEec
Confidence 665544443 555554
No 445
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.43 E-value=48 Score=39.96 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=125.0
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCc--EEEEecCCCEEEEEC-CCCeEEE
Q 005325 104 DSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCD--LLCAASSPELYRINL-EQGRFLS 180 (702)
Q Consensus 104 ~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~--llv~s~d~~V~vwdl-~~g~~~~ 180 (702)
...|+.+.|++..-..++..-.-..-.=| ..+..+...+. ......++|.... +++...+|.+.+|=. .+++...
T Consensus 10 ~~~Iv~~~WL~~~k~~~~~~~a~~~~~~~-~~~~~y~~~v~-~~P~g~~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~ 87 (753)
T PF11635_consen 10 GEQIVGFMWLNNGKPVILNKPAVKVKKDS-SSSNEYFYRVS-FPPSGPFHPGPAKSACIAVTRNGLLKLWYQKPDGQWNE 87 (753)
T ss_pred CCceeEEEhhccCCceeeechhhhccccc-cccceEecccc-cCCCCCcCCCCCceEEEEEecCCeEEEEEEcCCCccce
Confidence 45678888887653333222210000001 11122222222 2223345555433 777888899888855 2222222
Q ss_pred E-------eecCCCCeEEEEEc--CCCCEEEEEEcC---CeEEEEECCC--C--------cceeEEecccCC-C------
Q 005325 181 S-------LNTQSPALNVVSRS--KLHGLIACGGED---GAVECFDMRM--R--------SSAARINAVAPA-G------ 231 (702)
Q Consensus 181 ~-------l~~h~~~V~~l~~s--p~~~llasgs~D---G~V~iWD~~t--~--------~~v~~l~~~~~~-~------ 231 (702)
. +..-...|+..++. .+++.++.++.+ +.|++|-+.- + +...++...... .
T Consensus 88 ~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~ 167 (753)
T PF11635_consen 88 SSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVD 167 (753)
T ss_pred eehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEecccccccccc
Confidence 1 11122345554444 566555555554 7788775431 1 111112211000 0
Q ss_pred ----------CCCCCeEEEEEcC-----CC-CCEEEEEeC----CCeEEEEEcCCCe-EEE-Eeec--------------
Q 005325 232 ----------DADQEVTALEFDS-----NG-GFLMGVGSS----TGKVLIYDLRSSY-PIR-VKDH-------------- 275 (702)
Q Consensus 232 ----------~~~~~Vtslafsp-----d~-g~~LasGs~----DG~V~lwDlrs~~-~l~-~~~h-------------- 275 (702)
..-..++.|.|-+ +. ...|++.+. ...|.-|.++... +++ .+..
T Consensus 168 ~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~ 247 (753)
T PF11635_consen 168 PTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPT 247 (753)
T ss_pred CccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCc
Confidence 0224677888865 11 223444333 3479999987532 222 1110
Q ss_pred ---------cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe----cC---------------CCCcee
Q 005325 276 ---------MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI----EP---------------TAGKIN 327 (702)
Q Consensus 276 ---------~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i----~~---------------h~~~I~ 327 (702)
.....|.+|+... -+..++++-.||+|.++|..+.+.+... .. +-.++-
T Consensus 248 ~~l~~~~~i~~~~~V~si~~~~---~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~ 324 (753)
T PF11635_consen 248 YRLRRLDDITLNKRVVSITSPE---LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPL 324 (753)
T ss_pred eeEEEecccccCCeEEEEEecc---cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCc
Confidence 0123455665542 2445566679999999999886554433 11 111344
Q ss_pred EEEEEcCCCEEEEEeCCCcEE--EEEcCCCC
Q 005325 328 DVCVFKDSGLLLLALDCSQIP--SYFIPDLG 356 (702)
Q Consensus 328 ~v~~~p~~~~l~~a~~d~~I~--~~~ip~lg 356 (702)
.++|+|.+..++....++++. .+.....+
T Consensus 325 ~vafSPt~c~~v~~~~~~~~~~~~~~~~~~~ 355 (753)
T PF11635_consen 325 HVAFSPTMCSLVQIDEDGKTKKLLYMMRDSG 355 (753)
T ss_pred eEEECcccceEEEEecCCCceeeEEeecCCC
Confidence 588999999999999999866 44444443
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.18 E-value=0.082 Score=61.18 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=102.3
Q ss_pred CCCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCCce----------EEEEEEcCCCCEEEEEECCCeEEEEecC--Cc
Q 005325 71 TPDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDSEI----------INFEVLADDYSKLAFLCADRSISLHAKY--GK 137 (702)
Q Consensus 71 SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~~v----------v~~~~ls~dg~~Las~s~D~~I~iw~~~--g~ 137 (702)
-+...| +..|..++.|++.+.+.-.. .|..| ...+ ..+.-+|+||+.++..+.||.+.+|-++ |.
T Consensus 192 ~~~~~~-ic~~~~~~~i~lL~~~ra~~~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 192 AVNKVY-ICYGLKGGEIRLLNINRALRSLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccccce-eeeccCCCceeEeeechHHHHHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 345556 67788888888877665211 22223 2222 3344578888888888888888887654 21
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEECC
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DGAVECFDMR 216 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG~V~iWD~~ 216 (702)
... ..++.|-..++.....+..|...+..+.. +...++++++. +.-+++|...
T Consensus 270 ~~~-------------------------rclhewkphd~~p~vC~lc~~~~~~~v~i-~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 270 IVH-------------------------RCLHEWKPHDKHPRVCWLCHKQEILVVSI-GKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred ccH-------------------------hhhhccCCCCCCCceeeeeccccccCCcc-ceeEEEEecccCCcceeEeecc
Confidence 100 01222444443222222233333322222 12345666665 5568999888
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCC------------EEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEE
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGF------------LMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVD 283 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~------------~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~s 283 (702)
..+|+ +... -..|..|. -++ |. .++.-+-++.|.+|--+...++. ...| ++.||.+
T Consensus 324 ~w~Cl--l~~~------~d~v~iV~-p~~-~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~-~~hpV~S 392 (1283)
T KOG1916|consen 324 PWQCL--LDKL------IDGVQIVG-PHD-GEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPH-DGHPVLS 392 (1283)
T ss_pred chhhh--hhhc------ccceEeec-CCC-ccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhh-hcceecc
Confidence 77766 1111 12333333 222 21 23445668888888766544433 2333 3456666
Q ss_pred EEEe--eccCCCCCeEEEe--CCCEEEEEeCC
Q 005325 284 IKWH--QSINTERPKLITT--DNHIVRIWDPE 311 (702)
Q Consensus 284 l~fs--p~~~~~~~ll~ss--~Dg~V~IWd~~ 311 (702)
-.|. |... +...+.++ ....++||-..
T Consensus 393 ~i~v~S~~R~-~h~e~~~~~~~nr~~~i~~s~ 423 (1283)
T KOG1916|consen 393 AIFVTSPERP-DHIELITGGPLNRELKIWVSA 423 (1283)
T ss_pred ccccccCCCc-cccccccCCcchhhhhhhhhc
Confidence 5443 2111 22233333 36677787653
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.99 E-value=19 Score=35.83 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=86.3
Q ss_pred cEEEEecCCCEEEEECC--CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC---C---eEEEE-ECCC----Cccee-E
Q 005325 158 DLLCAASSPELYRINLE--QGRFLSSLNTQSPALNVVSRSKLHGLIACGGED---G---AVECF-DMRM----RSSAA-R 223 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~--~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D---G---~V~iW-D~~t----~~~v~-~ 223 (702)
.|+++..+..|-+|++. ..+.+..|.+- +.|..+.++..|++|+|-=.+ . .+++| +.+. .+++. .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 36677888889999987 44566666555 679999999999999986442 2 56655 2222 12222 1
Q ss_pred EecccCC---------------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE-------EE----EeeccC
Q 005325 224 INAVAPA---------------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP-------IR----VKDHMF 277 (702)
Q Consensus 224 l~~~~~~---------------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~-------l~----~~~h~~ 277 (702)
+-+|... ..-..+++||+..|-.| .|++|+ ++.+.||-+..... +- +..|..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1121000 11245788899888844 455544 56788888764322 11 223333
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
+.....+++. +.+++..++..++|..+
T Consensus 187 ~~~p~~v~ic------~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC------EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE------eeEEEEecCCEEEEEEE
Confidence 4556777776 34555556667777654
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.98 E-value=29 Score=36.86 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEEcCC----eEEEEECCCCc
Q 005325 166 PELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGGEDG----AVECFDMRMRS 219 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs~DG----~V~iWD~~t~~ 219 (702)
+.+++||+.+.+... .+... ......+..-.+.+++.|+.++ .+.+||+.+.+
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 458899988776433 22211 1112222233567888887654 35688988754
No 449
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.97 E-value=0.092 Score=59.36 Aligned_cols=19 Identities=63% Similarity=1.146 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCC
Q 005325 680 GSQGRGGRGRGGYRGR-ARRG 699 (702)
Q Consensus 680 ~~~~~~~~~~~~~~~~-~~~~ 699 (702)
|+|||||+| |||||+ +|||
T Consensus 535 ~gr~rg~~~-ggg~grg~~r~ 554 (556)
T PF05918_consen 535 GGRGRGRRS-GGGRGRGRGRG 554 (556)
T ss_dssp ---------------------
T ss_pred CCCCCCCCC-CCCCCCccccc
Confidence 444444432 334443 3565
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.76 E-value=9.1 Score=44.91 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=68.0
Q ss_pred EEEEecCCCEEEEECCC-------C---------e----EEEEeecCCCCeEEEEEc--CCCCEEEEEEcCCeEEEEECC
Q 005325 159 LLCAASSPELYRINLEQ-------G---------R----FLSSLNTQSPALNVVSRS--KLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~-------g---------~----~~~~l~~h~~~V~~l~~s--p~~~llasgs~DG~V~iWD~~ 216 (702)
|++|..+|.|..|.+++ . + +...+... ..++.|+++ ...++||+++....|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 78888899999995421 0 0 11112222 368999998 788999999999989888665
Q ss_pred CC-cceeEEecccCCCCCCCCeEEEEEcCCC----CC-EEEEEeCCCeEEEEEcC
Q 005325 217 MR-SSAARINAVAPAGDADQEVTALEFDSNG----GF-LMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 217 t~-~~v~~l~~~~~~~~~~~~Vtslafspd~----g~-~LasGs~DG~V~lwDlr 265 (702)
.. ........ ..+...|.+|+|-++. |. .|++++-.|.|.+|++.
T Consensus 196 l~~~r~~~~~s----~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 196 LVDERFYHVPS----HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccccccccc----cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 32 11111111 1235789999997752 32 78889999999999984
No 451
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.72 E-value=29 Score=36.37 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=73.7
Q ss_pred CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE------cCCeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 166 PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG------EDGAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs------~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
..|.+||..+.+....-..-.+.|+++.|..+..+++.|. ....+..||..+.. ...+.... ...-..+|++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~-s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGS-SNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcc-cccCCCcEEE
Confidence 3578899888877766656667899999987777887775 34568899988654 22222210 0111378889
Q ss_pred EEEcCCCCC-EEEEEe-CCC--eEEEEEcCCCeEEEEeeccCCCCeEEEEEeec
Q 005325 240 LEFDSNGGF-LMGVGS-STG--KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 240 lafspd~g~-~LasGs-~DG--~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~ 289 (702)
+.+...++. ..+.|. .+| .|..||=.+...+.......+..|..+.+.|.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 888543344 444444 333 46666544433332211222467888888874
No 452
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.56 E-value=5.6 Score=41.61 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=72.4
Q ss_pred CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe------CCCeEEEEEcCCCeEEEEeec---cCC
Q 005325 208 GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS------STGKVLIYDLRSSYPIRVKDH---MFD 278 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs------~DG~V~lwDlrs~~~l~~~~h---~~~ 278 (702)
..|++||+.+.+-..--..- .+.|++|.|..+ ...+++|. ....+..||+.+.....+... .-.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i------~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGI------SGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCCc------eEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCC
Confidence 46899998865532221111 578999999855 56666664 456789999988775444331 124
Q ss_pred CCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCCceeEE-ecCCCCceeEEEEEcC
Q 005325 279 SPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETGESMTS-IEPTAGKINDVCVFKD 334 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg~~l~~-i~~h~~~I~~v~~~p~ 334 (702)
.||+.+.+.. .+...+.+++ .+..|..||-.+...+.. +......|.++.+.|-
T Consensus 89 gpv~a~~~~~--~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 89 GPVTALTFIS--NDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CcEEEEEeec--cCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 6888888863 2344455443 255677787655544444 2222457777776654
No 453
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.47 E-value=28 Score=35.82 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=48.9
Q ss_pred CCeEEEEEcCC------C-CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC--C-CCCEEEEEeCC
Q 005325 187 PALNVVSRSKL------H-GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS--N-GGFLMGVGSST 256 (702)
Q Consensus 187 ~~V~~l~~sp~------~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp--d-~g~~LasGs~D 256 (702)
..|+|++.-.. . ..|+.|+++|.|.|.|......+..+..+ ..++ .|+.+- + ....|++++.|
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp------svPv-~i~~~G~~devdyRI~Va~Rd 249 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP------SVPV-FISVSGQYDEVDYRIVVACRD 249 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC------CCce-EEEEEeeeeccceEEEEEeCC
Confidence 46888874322 1 78999999999999999998888888877 3333 333221 0 13568888999
Q ss_pred CeEEEE
Q 005325 257 GKVLIY 262 (702)
Q Consensus 257 G~V~lw 262 (702)
|.|++.
T Consensus 250 g~iy~i 255 (257)
T PF14779_consen 250 GKIYTI 255 (257)
T ss_pred CEEEEE
Confidence 988763
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.09 E-value=36 Score=41.06 Aligned_cols=174 Identities=12% Similarity=0.137 Sum_probs=100.6
Q ss_pred CCCCeEEEEEc---CC----CCEEEEEEcCCeEEEEECCCC---------------cceeEEecccCCCCCCCCeEEEEE
Q 005325 185 QSPALNVVSRS---KL----HGLIACGGEDGAVECFDMRMR---------------SSAARINAVAPAGDADQEVTALEF 242 (702)
Q Consensus 185 h~~~V~~l~~s---p~----~~llasgs~DG~V~iWD~~t~---------------~~v~~l~~~~~~~~~~~~Vtslaf 242 (702)
...+|..|+|. .. ..+|++=.. ..+.|+.+.-. .++..+..+ .....+...++|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~---~tgg~~~aDv~F 153 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS---DTGGFPHADVAF 153 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechh---hcCCCccceEEe
Confidence 34567777776 21 145655444 56666662211 233333332 112467789999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCC----C-eEEEEe----ecc-----CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 243 DSNGGFLMGVGSSTGKVLIYDLRS----S-YPIRVK----DHM-----FDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 243 spd~g~~LasGs~DG~V~lwDlrs----~-~~l~~~----~h~-----~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
+|.....||+....|...|||+.. . ..+... ++. ....-..|.|.+ ....|+.++...+.++
T Consensus 154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~----~~~~lLv~~r~~l~~~ 229 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS----DSNRLLVCNRSKLMLI 229 (765)
T ss_pred ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC----CCCEEEEEcCCceEEE
Confidence 998678999999999999999921 1 112111 111 012234788975 4455555666778899
Q ss_pred eCCCCceeE-Ee-cCCCCceeEEEEEcCC-CEEEEEeCCCcEEEEEcCC----CCCCCCccCcccc
Q 005325 309 DPETGESMT-SI-EPTAGKINDVCVFKDS-GLLLLALDCSQIPSYFIPD----LGPTPKWCSPIES 367 (702)
Q Consensus 309 d~~tg~~l~-~i-~~h~~~I~~v~~~p~~-~~l~~a~~d~~I~~~~ip~----lg~ap~Wcsfld~ 367 (702)
|+.+..... .+ ......|.++.-+|.. .++++-+. ..|..+.+.. +.+.-.|--|++.
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~~~~~~llSwkH~~d~ 294 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSSEKLTRLLSWKHFRDP 294 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCCCCeeeeeecccccCC
Confidence 998765532 11 2235689999988862 33333333 4444444433 4455567777654
No 455
>COG4907 Predicted membrane protein [Function unknown]
Probab=88.87 E-value=0.31 Score=52.53 Aligned_cols=27 Identities=48% Similarity=0.686 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005325 675 KSDRSGSQGRGGRGRGGYRGRARRGGRR 702 (702)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (702)
++.|+|..|+|.||-|||-||+| ||+|
T Consensus 569 ~S~~~~~~GGG~G~~gGg~GGGG-GGar 595 (595)
T COG4907 569 SSRRSSSSGGGGGFSGGGSGGGG-GGAR 595 (595)
T ss_pred ccccCCCCCCCCCcCCCCCCCCC-CCCC
Confidence 44455666666666777666644 6655
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.67 E-value=3 Score=42.00 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=52.9
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCcceeEE-ecccCCC-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 194 RSKLHGLIACGGEDGAVECFDMRMRSSAARI-NAVAPAG-------DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 194 ~sp~~~llasgs~DG~V~iWD~~t~~~v~~l-~~~~~~~-------~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
+...+++|++-+.+|.+++||+.+++.+..- ....-.. .....|+++.++.+ |.-|++ -++|....||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-G~PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-GVPIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-CCEEEE-EeCCCEEEeccc
Confidence 3345778999999999999999987754332 1110000 23578888999877 776655 456888999877
Q ss_pred CCeEEEEee
Q 005325 266 SSYPIRVKD 274 (702)
Q Consensus 266 s~~~l~~~~ 274 (702)
-+..+.+.+
T Consensus 96 L~~W~~vsd 104 (219)
T PF07569_consen 96 LGCWIRVSD 104 (219)
T ss_pred cceeEEecc
Confidence 665554443
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.63 E-value=40 Score=36.61 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceEEEeeecCC--ceEEEEEEcCCCCEEEEEECCCeEEEEec-CCceE-EEecCCC-
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDS--EIINFEVLADDYSKLAFLCADRSISLHAK-YGKHY-SLRIPRM- 146 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~--~vv~~~~ls~dg~~Las~s~D~~I~iw~~-~g~~~-~~~i~~~- 146 (702)
-||+. .+++.+|.|.-+|..+....+...... ..+..-.+..+| .|++++.++.+...+. .|... ....+..
T Consensus 67 ~dg~v--~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDGTV--YVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eCCeE--EEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 34543 445677777777777754433222221 111222222244 4777778886666677 34332 2223330
Q ss_pred ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC---CeEEEEEcCCCCEEEEEEc--CCeEEEEECCCCcce
Q 005325 147 GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP---ALNVVSRSKLHGLIACGGE--DGAVECFDMRMRSSA 221 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~---~V~~l~~sp~~~llasgs~--DG~V~iWD~~t~~~v 221 (702)
-..-........+++.+.++.++.+|..+|.....+..... .+..-.. .....+..++. ++.+.-.|+.++...
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEe
Confidence 00001111122245555678999999999988776544321 1111111 22345555655 667888888888877
Q ss_pred eEEecccCCCCC------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 005325 222 ARINAVAPAGDA------DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH 275 (702)
Q Consensus 222 ~~l~~~~~~~~~------~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h 275 (702)
............ ......|-. +..++.++.+|.+...|..++++++....
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v----~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYV----DGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeeeecccCcccccccccccCceEEE----CCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 765433111000 000111111 12346778888899999999998885544
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.33 E-value=0.58 Score=54.55 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCccceEEecCCCcEEEEecCCCEEEEEC--CCCeEEEEeec-----CCCCeEEEEEcC---CCCEEEEEEcCCeEEEEE
Q 005325 145 RMGRDMAYNSWSCDLLCAASSPELYRINL--EQGRFLSSLNT-----QSPALNVVSRSK---LHGLIACGGEDGAVECFD 214 (702)
Q Consensus 145 ~~~~~l~~~~~s~~llv~s~d~~V~vwdl--~~g~~~~~l~~-----h~~~V~~l~~sp---~~~llasgs~DG~V~iWD 214 (702)
+...++.|.+..+.-+. -.-|.+++|++ -.|+....+.. ....+.-|.|.| ..-+++++-.++.|++..
T Consensus 133 G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~ 211 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLN 211 (1283)
T ss_pred CCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEee
Confidence 33335555544443111 22245666654 45554333322 223444555554 446777777888888776
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEE-----------EEcCCCCCEEEEEeCCCeEEEEEcC-----CCeEEE-EeeccC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTAL-----------EFDSNGGFLMGVGSSTGKVLIYDLR-----SSYPIR-VKDHMF 277 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtsl-----------afspd~g~~LasGs~DG~V~lwDlr-----s~~~l~-~~~h~~ 277 (702)
+.+... ..+..| ...++.+ ..||| |..||..+.||.|+.|.+- ...+++ .+.|.
T Consensus 212 ~~ra~~-~l~rsH------s~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd- 282 (1283)
T KOG1916|consen 212 INRALR-SLFRSH------SQRVTDMAFFAEGVLKLASLSPD-GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD- 282 (1283)
T ss_pred echHHH-HHHHhc------CCCcccHHHHhhchhhheeeCCC-CcEEEEeecCCccceeeeeeeccccHhhhhccCCCC-
Confidence 654221 222223 2223222 36899 9999999999998888764 222333 34552
Q ss_pred CCCeEEEEEeecc-----CC-CCCeEEEeC-CCEEEEEeCCCCcee
Q 005325 278 DSPIVDIKWHQSI-----NT-ERPKLITTD-NHIVRIWDPETGESM 316 (702)
Q Consensus 278 ~~~I~sl~fsp~~-----~~-~~~ll~ss~-Dg~V~IWd~~tg~~l 316 (702)
+.|-.|..|+... .. -..++.+++ ...+++|.....+++
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2333333233100 00 112334444 678999998877665
No 459
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=88.20 E-value=0.44 Score=41.81 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.3
Q ss_pred CCcceeeccccccccc
Q 005325 584 APRLYEVKDERHAEAF 599 (702)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (702)
.|-+.|+|+|+.+...
T Consensus 13 ~pmlvELKNget~nGh 28 (134)
T KOG3293|consen 13 HPMLVELKNGETYNGH 28 (134)
T ss_pred CeEEEEecCCCEecce
Confidence 5778999999777543
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.60 E-value=3.9 Score=41.16 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-------ec------cCCCCeEEEEEeeccCCCCCeEEEeC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK-------DH------MFDSPIVDIKWHQSINTERPKLITTD 301 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~-------~h------~~~~~I~sl~fsp~~~~~~~ll~ss~ 301 (702)
.++..+..+ +.+|++-+.+|.+++||+.+.+.+... .. .....|..+..+. .+..+++-.
T Consensus 13 s~~~~l~~~---~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~----~G~PiV~ls 85 (219)
T PF07569_consen 13 SPVSFLECN---GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS----NGVPIVTLS 85 (219)
T ss_pred CceEEEEeC---CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC----CCCEEEEEe
Confidence 455555543 778999999999999999998764311 10 1134455555553 333344444
Q ss_pred CCEEEEEeCC
Q 005325 302 NHIVRIWDPE 311 (702)
Q Consensus 302 Dg~V~IWd~~ 311 (702)
++..++|+..
T Consensus 86 ng~~y~y~~~ 95 (219)
T PF07569_consen 86 NGDSYSYSPD 95 (219)
T ss_pred CCCEEEeccc
Confidence 4556666654
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.57 E-value=5.3 Score=44.18 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=93.1
Q ss_pred CEE-EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC------CCEEEEEeCCCeEEEEEcCC-CeEE
Q 005325 199 GLI-ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG------GFLMGVGSSTGKVLIYDLRS-SYPI 270 (702)
Q Consensus 199 ~ll-asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~------g~~LasGs~DG~V~lwDlrs-~~~l 270 (702)
++| ..|..-..++-.|+.-|+.+-....+ ..| -+.|.|.. ...-++|-++..|--.|.|- +..+
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~-------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLK-------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecC-------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 444 34555667888888889999888888 455 77888751 12345677777777778774 3222
Q ss_pred EEeeccCCCCeEEEEEeecc-CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 271 RVKDHMFDSPIVDIKWHQSI-NTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 271 ~~~~h~~~~~I~sl~fsp~~-~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
..... ...++.-.|+... ...+++++++..|.|++||.-.-..-+.+++....|-.|..+.++..+++.|..- +..
T Consensus 552 ~v~es--KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y-llL 628 (776)
T COG5167 552 KVVES--KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY-LLL 628 (776)
T ss_pred eeeee--hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce-EEE
Confidence 21111 1122333333211 2467888888999999999875555566777677899999999998887777653 333
Q ss_pred EEcC
Q 005325 350 YFIP 353 (702)
Q Consensus 350 ~~ip 353 (702)
..+|
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 3443
No 462
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.61 E-value=37 Score=36.96 Aligned_cols=59 Identities=15% Similarity=0.012 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCCEEEEEEcC-------------------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC
Q 005325 188 ALNVVSRSKLHGLIACGGED-------------------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF 248 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~D-------------------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~ 248 (702)
.++.++|.|++.+.++-+.. |.|.-+|+.++. +..+... -.....++|+|+ |.
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G------~rnp~Gl~~d~~-G~ 196 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHG------FQNPYGHSVDSW-GD 196 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecC------cCCCccceECCC-CC
Confidence 46778888887766554421 445555555433 2222221 244568899998 87
Q ss_pred EEEEEe
Q 005325 249 LMGVGS 254 (702)
Q Consensus 249 ~LasGs 254 (702)
++++-.
T Consensus 197 l~~tdn 202 (367)
T TIGR02604 197 VFFCDN 202 (367)
T ss_pred EEEEcc
Confidence 776643
No 463
>PLN02193 nitrile-specifier protein
Probab=86.47 E-value=60 Score=36.71 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCEEEEECCCCeEEEEeec---CCC-CeEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 166 PELYRINLEQGRFLSSLNT---QSP-ALNVVSRSKLHGLIACGGEDG-----AVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~---h~~-~V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
+.+++||+.+.+....-.. ... .-.+++. -.+.+++.|+.++ .+.+||+.+.+-.. +............
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~ 321 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGG 321 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCC
Confidence 4577788877654331111 011 1112222 2456777777543 46788887654211 1111000000112
Q ss_pred eEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCCeEEEE
Q 005325 237 VTALEFDSNGGFLMGVGSST----GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 237 Vtslafspd~g~~LasGs~D----G~V~lwDlrs~~~l~~ 272 (702)
...+.+ + +..++.|+.+ ..|.+||+.+.+...+
T Consensus 322 ~~~~~~--~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 322 AGLEVV--Q-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred cEEEEE--C-CcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence 222233 3 6677777655 4689999998776554
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.36 E-value=21 Score=35.61 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred EEEEEEcCCeEEEEECC--CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC---C---eEEEE-EcCC----
Q 005325 200 LIACGGEDGAVECFDMR--MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST---G---KVLIY-DLRS---- 266 (702)
Q Consensus 200 llasgs~DG~V~iWD~~--t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D---G---~V~lw-Dlrs---- 266 (702)
.|+.+...+.|.+|++. ......++..- +.|..|.++.. |.+|++--.+ . .+++| +.+.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 44343666889999998 33456667665 88999999999 9999985332 2 56775 3322
Q ss_pred CeEEE--Eeecc-------------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 267 SYPIR--VKDHM-------------------FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 267 ~~~l~--~~~h~-------------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
..++. +.+|. -..++.+|+-.| -.+.+++++. +.+.||.+..
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~---~tG~LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCP---VTGNLLVGCG-NKLVLFTLKY 164 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecC---CCCCEEEEcC-CEEEEEEEEE
Confidence 12322 23321 123566777776 4566777765 5678888753
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.35 E-value=2.8 Score=30.38 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCC---CEEEEEEcCCeEEEEECCC
Q 005325 187 PALNVVSRSKLH---GLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 187 ~~V~~l~~sp~~---~llasgs~DG~V~iWD~~t 217 (702)
+.|.++.|+|.. .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999865 4888888889999999995
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.73 E-value=13 Score=45.89 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=33.4
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL 95 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~ 95 (702)
+..+.||.....++|+|.-.. +|.|+..|.|++|-....
T Consensus 29 ~~~~G~~~~~~~~afD~~q~l-lai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 29 TNRHGFPSTPSALAFDPTQGL-LAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred ceecCCCCCCcceeeccccce-EEEEEecccEEEecccce
Confidence 345678889999999999888 999999999999987663
No 467
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.48 E-value=53 Score=34.76 Aligned_cols=190 Identities=12% Similarity=0.116 Sum_probs=89.0
Q ss_pred ceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc---ceEEecCCCcEEEEecCCCEE-EEECCCCeEEEE
Q 005325 106 EIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DMAYNSWSCDLLCAASSPELY-RINLEQGRFLSS 181 (702)
Q Consensus 106 ~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~-vwdl~~g~~~~~ 181 (702)
....+..+.+. ....++..+.|..-.-.|..-......... .+... ....+++++..|.++ -||.-.......
T Consensus 105 s~~~i~~l~~~--~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 105 SPFGITALGDG--SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPH 181 (302)
T ss_dssp -EEEEEEEETT--EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEE
T ss_pred CeeEEEEcCCC--cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC-CCCcEEEEECcccEEEEecCCCccceEE
Confidence 34455555543 444445556655443345443332222222 33322 333466666777765 567654333333
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC-CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 182 LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP-AGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 182 l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~-~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
-......|..+.|.|++.+.+++ ..|.|++=+... ...++..+.. .......+..|+|.++ +...|+|+. |. .
T Consensus 182 ~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg~-G~-l 255 (302)
T PF14870_consen 182 NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPP-NEIWAVGGS-GT-L 255 (302)
T ss_dssp E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEESSS-S-EEEEEST-T--E
T ss_pred ccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCceeeEEEEecCC-CCEEEEeCC-cc-E
Confidence 33445689999999998877754 788888877221 1122222110 0112355899999988 666666554 43 3
Q ss_pred EEEcCCCeEEEEeec--cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 261 IYDLRSSYPIRVKDH--MFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 261 lwDlrs~~~l~~~~h--~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
+.....++.-..... .....+..|.|.+ ...-++-+.+|.|--|
T Consensus 256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~----~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVN----PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEESSTTSS-EE-GGGTTSSS---EEEEEE----TTEEEEE-STTEEEEE
T ss_pred EEeCCCCccceECccccCCCCceEEEEEcC----CCceEEECCCcEEEEe
Confidence 445555654332211 1134588999985 5566677777876544
No 468
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.38 E-value=90 Score=37.29 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=45.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCC------------ceE----------EEeeecCCceEEEEEE--cCCCC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQ------------LSL----------KFERHLDSEIINFEVL--ADDYS 118 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~------------~~~----------~~~~h~~~~vv~~~~l--s~dg~ 118 (702)
-.|..|.+||+|.+++++|. . .|.|-.+.. ... -|..+....+..+.|. +.++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~-~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGP-R-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcC-C-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 36899999999999655554 3 344433321 000 1112223445555554 33568
Q ss_pred EEEEEECCCeEEEEecC
Q 005325 119 KLAFLCADRSISLHAKY 135 (702)
Q Consensus 119 ~Las~s~D~~I~iw~~~ 135 (702)
.|+....|+++++|++.
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 99999999999999987
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.07 E-value=0.16 Score=55.45 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=91.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-EecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEE-e-e
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSS-L-N 183 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~-l-~ 183 (702)
+...|-..+. .++.++.+..+..||..|.+.. ...|...-++++...... ++++...+.+++||+.+...... + -
T Consensus 38 i~~~w~~e~~-nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 38 IIHRWRPEGH-NLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred ceeeEecCCC-ceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 4445554444 4778888888888888876554 333444447777763333 56667788899999875422111 1 1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 184 TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
.|+... +.|++....++.|...|.+.|++..+.+.+..+..| ...+++++|.+. + +.+.++.|
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh------~RRgtq~av~lE-d-~vil~dcd 179 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH------QRRGTQIAVTLE-D-YVILCDCD 179 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhccc------ccceeEEEeccc-c-eeeecCcH
Confidence 122222 679998889999999999999999887766665545 688999999987 4 44444433
No 470
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=84.84 E-value=1e+02 Score=37.43 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=121.8
Q ss_pred CCCEEEEEECCCeEEEEecCC--------ceE-EEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECC---C------
Q 005325 116 DYSKLAFLCADRSISLHAKYG--------KHY-SLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLE---Q------ 175 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~g--------~~~-~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~---~------ 175 (702)
+...+++.+.+|.|+--.... .-. .+.+..... .+..+.....+++.++.|.++.++.. .
T Consensus 495 ~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~ 574 (800)
T TIGR01063 495 RENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAK 574 (800)
T ss_pred cceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCC
Confidence 345677888888887543221 000 011111111 22233444458888889998877432 2
Q ss_pred CeEE---EEeecCCCCeEEEEEc--CCCCEEEEEEcCCeEEEEECCCCccee-----EEecccCCCCCCCCeEEEEEcCC
Q 005325 176 GRFL---SSLNTQSPALNVVSRS--KLHGLIACGGEDGAVECFDMRMRSSAA-----RINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 176 g~~~---~~l~~h~~~V~~l~~s--p~~~llasgs~DG~V~iWD~~t~~~v~-----~l~~~~~~~~~~~~Vtslafspd 245 (702)
|..+ ..+.....-|.++.+. .+...++..+.+|.++-.++....... .+... . ...+..+.....
T Consensus 575 G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklk----e-~D~lv~v~~~~~ 649 (800)
T TIGR01063 575 GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLD----D-GDELISVRLTSG 649 (800)
T ss_pred CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCC----C-CCEEEEEEEeCC
Confidence 2222 1122222345555543 244688889999999988875432111 11111 1 244544444444
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC------
Q 005325 246 GGFLMGVGSSTGKVLIYDLRS-------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET------ 312 (702)
Q Consensus 246 ~g~~LasGs~DG~V~lwDlrs-------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t------ 312 (702)
...++..+..|.+..+.+.. ...+....-..+..|.++...+ ++..+++.+..|.++...+..
T Consensus 650 -~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~---~~~~ll~vT~~G~~Kr~~l~e~~~~~R 725 (800)
T TIGR01063 650 -DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVS---EESYLLIVTENGYGKRTSIEEYRETSR 725 (800)
T ss_pred -CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEec---cccEEEEEecCCcEEEEEHHHccccCC
Confidence 56788888888777665532 1111111111234465555442 244677788888888876531
Q ss_pred -CceeEEe--cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 313 -GESMTSI--EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 313 -g~~l~~i--~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++-+..+ ......+..+....+...+++.+.++.+..|.+..+
T Consensus 726 ~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI 771 (800)
T TIGR01063 726 GGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDV 771 (800)
T ss_pred CCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhC
Confidence 2333333 332345555555555556788888888888776554
No 471
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.67 E-value=57 Score=34.37 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=90.5
Q ss_pred EEEEecCCCEEEEECCCCeE-----EEEee-cCCCCe-EEEEEcCC--CCEEE-EEEcCCeEEEEECCCCcce--eEEec
Q 005325 159 LLCAASSPELYRINLEQGRF-----LSSLN-TQSPAL-NVVSRSKL--HGLIA-CGGEDGAVECFDMRMRSSA--ARINA 226 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~-----~~~l~-~h~~~V-~~l~~sp~--~~lla-sgs~DG~V~iWD~~t~~~v--~~l~~ 226 (702)
++.++.+++|.-|+..-+.. ...+. .....| ..+++... +.+|. +--..++|.+||-.-.... ..+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 57788899999998543322 11111 111222 34444433 44444 4345789999986532211 11111
Q ss_pred c-cCCC---------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc--CCCC
Q 005325 227 V-APAG---------DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI--NTER 294 (702)
Q Consensus 227 ~-~~~~---------~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~--~~~~ 294 (702)
+ .+.. ...-.|+-..-.++ ...=+.|..-|.|-+||+.-.-..++.....-..-+.|+..|.. .-.+
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCc-ccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 1 0000 00112222233333 33344455668899999865433333221112234677766522 1245
Q ss_pred CeEEEe-CCCEEEEEeCCCCceeEEecCCCC------ceeEEEEEc
Q 005325 295 PKLITT-DNHIVRIWDPETGESMTSIEPTAG------KINDVCVFK 333 (702)
Q Consensus 295 ~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~------~I~~v~~~p 333 (702)
.||++- .||+|.++|..+|..+..+....+ .++.|+|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677776 699999999999998877765332 355666654
No 472
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.64 E-value=3.4 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=23.2
Q ss_pred CCCceeEEEECCCCCEEEEEEecC--CcEEEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYP--PQVKVY 90 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~d--g~I~vw 90 (702)
.+..-.+..|||||++|+.+...+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455667899999999988888887 777776
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.60 E-value=38 Score=39.76 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=51.8
Q ss_pred EEEEEcCCCCCEEEEEeCCCe-----EEEEEc---CCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 238 TALEFDSNGGFLMGVGSSTGK-----VLIYDL---RSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~-----V~lwDl---rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
..+.|-|+ |..+++-..||. |..+.- |.|.+-.-.+. ...+..++|+- ...+++.+..+.|++|-
T Consensus 250 ~~LSWkpq-gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~--dEk~~~~~wn~----~s~vlav~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQ-GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGC--DEKAFLENWNL----LSTVLAVAEGNLLKLWT 322 (1243)
T ss_pred hccccccC-CceeeeeccCCCCCcceEEEEccCCcccCCccccCCc--hhhhhhhhhhH----HHHHHHHhhcceEEEEE
Confidence 35899999 999998776653 444431 22332111111 23456777873 44455666788999998
Q ss_pred CCCCceeEEecCCCCceeEEEEEcCC
Q 005325 310 PETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 310 ~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
..+..-....+..-..|.-+.|+|..
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeecccc
Confidence 77644333333223345556777743
No 474
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.48 E-value=31 Score=35.24 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=78.9
Q ss_pred EEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 169 YRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGE-D--GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 169 ~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~-D--G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
.+||+.++++. .+..... .+.+-.+.|+|.+|.+|+. + ..|++++......-...............-.++..-|
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46899988763 3433322 2333347799999999987 2 3478888754110001110000011124445566667
Q ss_pred CCCCEEEEEeCCC-eEEEEEcCC--CeEEEE--eec----c--CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 245 NGGFLMGVGSSTG-KVLIYDLRS--SYPIRV--KDH----M--FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 245 d~g~~LasGs~DG-~V~lwDlrs--~~~l~~--~~h----~--~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
| |..|++|+... +.-+|.-.. ..+..+ ... . +-.| -+...| ++.+++.+..+.+ |||..+.
T Consensus 128 D-G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llP----dG~lFi~an~~s~-i~d~~~n 199 (243)
T PF07250_consen 128 D-GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLP----DGNLFIFANRGSI-IYDYKTN 199 (243)
T ss_pred C-CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcC----CCCEEEEEcCCcE-EEeCCCC
Confidence 8 99999888775 344555422 112211 110 0 1112 233344 6777777765544 7899988
Q ss_pred ceeEEecCCCCc
Q 005325 314 ESMTSIEPTAGK 325 (702)
Q Consensus 314 ~~l~~i~~h~~~ 325 (702)
+.+..++.-.+.
T Consensus 200 ~v~~~lP~lPg~ 211 (243)
T PF07250_consen 200 TVVRTLPDLPGG 211 (243)
T ss_pred eEEeeCCCCCCC
Confidence 777776653443
No 475
>PLN02153 epithiospecifier protein
Probab=82.86 E-value=72 Score=34.18 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=26.7
Q ss_pred CEEEEECCCCeEEEEeecC---CC-CeEEEEEcCCCCEEEEEEcC-------------CeEEEEECCCCc
Q 005325 167 ELYRINLEQGRFLSSLNTQ---SP-ALNVVSRSKLHGLIACGGED-------------GAVECFDMRMRS 219 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h---~~-~V~~l~~sp~~~llasgs~D-------------G~V~iWD~~t~~ 219 (702)
.|.+||+.+.+-...-... .. .-.+++. -++.+++.|+.+ ..|.+||+.+.+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 4778898876543211100 11 1112222 245566665432 468889988764
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.71 E-value=0.15 Score=55.70 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=94.4
Q ss_pred eEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCcceeEEeccc
Q 005325 150 MAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGGEDGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 150 l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
..+-+.+.++++++.+..|..||-....... . ........++|.-++. +++.+-..+.+++||+.+... ..+....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le-~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg 116 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILE-L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGG 116 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecc-c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccC
Confidence 3444556668888888888888754332221 1 1223344667777774 444556679999999986432 2222221
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee-ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD-HMFDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~-h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
...-.-+.|++. +..++.|...|.+.||+.++.+.+...+ | ...+++++|.+ .++.+.++.|..+.+
T Consensus 117 -----~~s~sll~wsKg-~~el~ig~~~gn~viynhgtsR~iiv~Gkh--~RRgtq~av~l----Ed~vil~dcd~~L~v 184 (615)
T KOG2247|consen 117 -----TSSKSLLAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIVMGKH--QRRGTQIAVTL----EDYVILCDCDNTLSV 184 (615)
T ss_pred -----cchHHHHhhccC-CccccccccccceEEEeccchhhhhhhccc--ccceeEEEecc----cceeeecCcHHHHHH
Confidence 122233789998 9999999999999999999877665555 6 56899999997 666666666665544
Q ss_pred E
Q 005325 308 W 308 (702)
Q Consensus 308 W 308 (702)
-
T Consensus 185 ~ 185 (615)
T KOG2247|consen 185 T 185 (615)
T ss_pred h
Confidence 3
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=35 Score=42.28 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
+++..|.+...-+.+-+-|.=.. |=-+.|..+.+|+..+ ..+.+-......|+.+..+-|.
T Consensus 70 el~eq~~~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPk---------------- 131 (1311)
T KOG1900|consen 70 ELLEQFSNIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPK---------------- 131 (1311)
T ss_pred HHHHHhcCcceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCC----------------
Q ss_pred ecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEE-------ECCCCeEEEEeecCCC--CeEEEEEcCCCCEEEE
Q 005325 133 AKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRI-------NLEQGRFLSSLNTQSP--ALNVVSRSKLHGLIAC 203 (702)
Q Consensus 133 ~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vw-------dl~~g~~~~~l~~h~~--~V~~l~~sp~~~llas 203 (702)
.-.|.+.-..+++.+.--+|+++ ..+...+...++.... .|+|+....+|++|++
T Consensus 132 ----------------pgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~ 195 (1311)
T KOG1900|consen 132 ----------------PGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFA 195 (1311)
T ss_pred ----------------CCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEe
Q ss_pred EEcCCeEEEEECC-------CCcceeEEecccCC------------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 204 GGEDGAVECFDMR-------MRSSAARINAVAPA------------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 204 gs~DG~V~iWD~~-------t~~~v~~l~~~~~~------------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
|-.+ .+|.+. .++....+...... ..+..+|..|+.... -..|.+-+..|+|.+||+
T Consensus 196 G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S-R~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 196 GRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS-RNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc-cceeeeeccCceEEEEEc
Q ss_pred CCCeEEEEeecc--------------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 265 RSSYPIRVKDHM--------------------FDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 265 rs~~~l~~~~h~--------------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
...-......-. .-.+|.+|+-.+........+++....-|++|
T Consensus 272 ~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l~LvA~ts~GvRlY 335 (1311)
T KOG1900|consen 272 GGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDLHLVAITSTGVRLY 335 (1311)
T ss_pred cCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccceeEEEEecCCeEEE
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.40 E-value=52 Score=36.49 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 281 IVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
|.+|+..+ ..+.+++...++.|.+|++..
T Consensus 192 I~~v~~d~---~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDP---SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEET---TTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecC---CcCEEEEEeCCCcEEEEEEeC
Confidence 88888876 234455556789999999974
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.68 E-value=66 Score=34.14 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCEEEEEEc-----CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCC
Q 005325 197 LHGLIACGGE-----DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG----KVLIYDLRSS 267 (702)
Q Consensus 197 ~~~llasgs~-----DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG----~V~lwDlrs~ 267 (702)
++.+++.|+. ...|.+||+.+.+-...-..+. .......++.+ + +.+.+.|+.++ .+.+||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~~~~~~~~--~-~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG---EPRVQPVCVKL--Q-NELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC---CCCCcceEEEE--C-CEEEEEcCCCCccccceEEEecCCC
Confidence 4567777764 2468889988654221111110 00111122222 3 66777777654 3568999887
Q ss_pred eEEEE
Q 005325 268 YPIRV 272 (702)
Q Consensus 268 ~~l~~ 272 (702)
+...+
T Consensus 197 ~W~~~ 201 (323)
T TIGR03548 197 QWQKV 201 (323)
T ss_pred eeEEC
Confidence 65443
No 480
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.62 E-value=1.2 Score=52.43 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=6.3
Q ss_pred cccchhhhcCC
Q 005325 366 ESMTEELEEGG 376 (702)
Q Consensus 366 d~lteelee~~ 376 (702)
++.|+||+..+
T Consensus 781 ~~~t~em~r~p 791 (1282)
T KOG0921|consen 781 DHGTAEMFRTP 791 (1282)
T ss_pred hcCcHhhhcCc
Confidence 45666666543
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.61 E-value=58 Score=36.93 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCcEEEEec-----CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC
Q 005325 156 SCDLLCAAS-----SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA 230 (702)
Q Consensus 156 s~~llv~s~-----d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~ 230 (702)
...|++... ...++++| ..|.....+.........+...++|.+++... ..+..+|+. |+.+......
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~--- 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLP--- 185 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecC---
Q ss_pred CCCCCCe----EEEEEcCCCCCEEEEEeC-------------CCeEEEEEcCCCeEEE---EeeccCCCCe---------
Q 005325 231 GDADQEV----TALEFDSNGGFLMGVGSS-------------TGKVLIYDLRSSYPIR---VKDHMFDSPI--------- 281 (702)
Q Consensus 231 ~~~~~~V----tslafspd~g~~LasGs~-------------DG~V~lwDlrs~~~l~---~~~h~~~~~I--------- 281 (702)
... ..+.+.|+ |++|+.+.. .-.|..+| .+++.+. +..|.....-
T Consensus 186 ----~~~~~~HHD~~~l~n-Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~ 259 (477)
T PF05935_consen 186 ----GGYYDFHHDIDELPN-GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYG 259 (477)
T ss_dssp ----TTEE-B-S-EEE-TT-S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SS
T ss_pred ----CcccccccccEECCC-CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccc
Q ss_pred --------------EEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCc
Q 005325 282 --------------VDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGK 325 (702)
Q Consensus 282 --------------~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~ 325 (702)
++|.+.| .++.+++++ .-..|...|..++++...+-+|...
T Consensus 260 ~~~~~~~~~DW~H~Nsi~yd~---~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 260 DISGSGGGRDWLHINSIDYDP---SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp SSS-SSTTSBS--EEEEEEET---TTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred ccccCCCCCCccccCccEEeC---CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
No 482
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=81.57 E-value=39 Score=39.91 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=32.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEE
Q 005325 248 FLMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINTERPKLITTDNHIV 305 (702)
Q Consensus 248 ~~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V 305 (702)
..|++-+.-|.|..|+-.+...... .....-..|..|+|. .+.+++++.||+.
T Consensus 399 ~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~~isdIa~~-----~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 399 NKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIFEISDIAWT-----ANSLILCTRDGCW 452 (1267)
T ss_pred hheeeeccCCeEEEEecCCCceeeeecccceeeehhhhhhc-----cceEEEEecCcce
Confidence 4567778889999999776543321 111012256788887 4567777767643
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.06 E-value=7.5 Score=37.48 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCC------CEEEEEEcCCeEEEEECCC
Q 005325 187 PALNVVSRSKLH------GLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 187 ~~V~~l~~sp~~------~llasgs~DG~V~iWD~~t 217 (702)
..|..++|+|.| .+|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999976 6899999999999998764
No 484
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.58 E-value=1.6e+02 Score=36.64 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=73.2
Q ss_pred CEEEEEEc---------CCeEEEEECCC-----CcceeEEeccc-CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 005325 199 GLIACGGE---------DGAVECFDMRM-----RSSAARINAVA-PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD 263 (702)
Q Consensus 199 ~llasgs~---------DG~V~iWD~~t-----~~~v~~l~~~~-~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD 263 (702)
.+|++|+. -|.+.|+|+-. +++........ ......++|.++|=- + | +|++ +....|.||+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~-G-~l~~-~~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-R-G-HLLS-SQGQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-c-c-EEEE-ccCcEEEEEE
Confidence 68888864 38899998642 22221111110 001235788888765 2 4 4444 3456899999
Q ss_pred c-CCCeEE--EEeeccCCCCeEEEEEeeccCCCCCeEEEeC-CCEEEEEeCCC-CceeEEecCC--CCceeEEEEEcCCC
Q 005325 264 L-RSSYPI--RVKDHMFDSPIVDIKWHQSINTERPKLITTD-NHIVRIWDPET-GESMTSIEPT--AGKINDVCVFKDSG 336 (702)
Q Consensus 264 l-rs~~~l--~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-Dg~V~IWd~~t-g~~l~~i~~h--~~~I~~v~~~p~~~ 336 (702)
+ +.+..+ .+.+. ..-|.++... ..+++.+| -..|.+.-... +..+..+... .-.+.++.|--++.
T Consensus 1123 l~r~~~ligVaFiD~--~~yv~s~~~v------knlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~ 1194 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDL--PLYVHSMKVV------KNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS 1194 (1366)
T ss_pred eccCCcceeeEEecc--ceeEEehhhh------hhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC
Confidence 9 554433 34333 2233333332 23444443 44454433332 2222222221 23566777766554
Q ss_pred --EEEEEeCCCcEEEEEc
Q 005325 337 --LLLLALDCSQIPSYFI 352 (702)
Q Consensus 337 --~l~~a~~d~~I~~~~i 352 (702)
.++++..++.|++|.-
T Consensus 1195 ~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1195 NLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred eeEEEEEcCCCcEEEEEe
Confidence 4666777889998753
No 485
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=79.97 E-value=76 Score=32.58 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCC-CEEEE-ECCCCeEEE-E
Q 005325 108 INFEVLADDYSKLAFLC---ADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSP-ELYRI-NLEQGRFLS-S 181 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s---~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~-~V~vw-dl~~g~~~~-~ 181 (702)
.....+++++..+++.. ....+.++...+..........-..-.|.+. ..++++.... ...++ +..++.... .
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 45566888888887776 3445555554443333221111113333444 3354444433 33444 333333221 1
Q ss_pred eecC--CCCeEEEEEcCCCCEEEEEE---cCCeEEEEECCCCc-c-eeEEecccCC-CCCCCCeEEEEEcCCCCCEEEEE
Q 005325 182 LNTQ--SPALNVVSRSKLHGLIACGG---EDGAVECFDMRMRS-S-AARINAVAPA-GDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 182 l~~h--~~~V~~l~~sp~~~llasgs---~DG~V~iWD~~t~~-~-v~~l~~~~~~-~~~~~~Vtslafspd~g~~LasG 253 (702)
+... ...|..+.++|+|..+|.-. .++.|.+--+.... - -..+...... ......++.++|.++ +.+++.+
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~-~~L~V~~ 183 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD-STLVVLG 183 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-CEEEEEe
Confidence 1111 12799999999997666555 35777766543111 1 1111111000 112468999999998 6665555
Q ss_pred eCCC
Q 005325 254 SSTG 257 (702)
Q Consensus 254 s~DG 257 (702)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 4443
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.59 E-value=11 Score=36.33 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCC------CEEEEEeCCCeEEEEEcCC
Q 005325 235 QEVTALEFDSNGG------FLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 235 ~~Vtslafspd~g------~~LasGs~DG~V~lwDlrs 266 (702)
..|.+++|||. | -+||+-+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~-Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPS-GLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCC-CCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999996 4 3788999999999997653
No 487
>PRK13684 Ycf48-like protein; Provisional
Probab=79.58 E-value=94 Score=33.39 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEE-EEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLI-YDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~l-wDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
...+.++.+.|+ +.++++| ..|.+.. +|- .++............++++.+.| ++.+++.+..|.+.+=..+.
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~----~g~~~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP----DGNLWMLARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCC-CeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC----CCCEEEEecCCEEEEccCCC
Confidence 367899999998 7666554 4554442 221 12222211222356889999987 66677777778765434555
Q ss_pred CceeEEecCC----CCceeEEEEEcCCCEEEEEeCCCcEE
Q 005325 313 GESMTSIEPT----AGKINDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 313 g~~l~~i~~h----~~~I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
|.....+..+ ...+.++++.|++. +++++.++.+.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL 283 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence 6655543321 23578888888766 45555666443
No 488
>PRK05560 DNA gyrase subunit A; Validated
Probab=79.49 E-value=1.6e+02 Score=35.90 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=119.9
Q ss_pred CCCEEEEEECCCeEEEEecCCce--------E-EEecCCCc--cceEEecCCCcEEEEecCCCEEEEEC---C------C
Q 005325 116 DYSKLAFLCADRSISLHAKYGKH--------Y-SLRIPRMG--RDMAYNSWSCDLLCAASSPELYRINL---E------Q 175 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~g~~--------~-~~~i~~~~--~~l~~~~~s~~llv~s~d~~V~vwdl---~------~ 175 (702)
+...++..+.+|.|+--...... . .+.+.... ..+........+++.++.|.++.+.. . .
T Consensus 497 ~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~ 576 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTAR 576 (805)
T ss_pred CCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCC
Confidence 44667788888888754322100 0 00011111 12233344455888888898887743 2 2
Q ss_pred CeEEE---EeecCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEECCCCc-------ceeEEecccCCCCCCCCeEEEEEc
Q 005325 176 GRFLS---SLNTQSPALNVVSRSK--LHGLIACGGEDGAVECFDMRMRS-------SAARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 176 g~~~~---~l~~h~~~V~~l~~sp--~~~llasgs~DG~V~iWD~~t~~-------~v~~l~~~~~~~~~~~~Vtslafs 243 (702)
|..+. .+.....-|.++.+.. +...++..+.+|.|+--++.... ....+.. ...+..+...
T Consensus 577 G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-------~D~lv~v~~~ 649 (805)
T PRK05560 577 GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-------GDELIGVRLT 649 (805)
T ss_pred CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-------CCEEEEEEEe
Confidence 33321 1222233455666652 55788999999999877654321 1112221 2445444444
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCC-------eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC----
Q 005325 244 SNGGFLMGVGSSTGKVLIYDLRSS-------YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET---- 312 (702)
Q Consensus 244 pd~g~~LasGs~DG~V~lwDlrs~-------~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t---- 312 (702)
.. ...|+..+..|.+..+.+..- ..+....-..+..|.++...+ .++..+++.+..|.++...+..
T Consensus 650 ~~-~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~--~~~~~il~vTk~G~iKr~~l~e~~~~ 726 (805)
T PRK05560 650 DG-DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVR--EDSQEILTVTENGYGKRTPVSEYRLQ 726 (805)
T ss_pred CC-CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEc--CCCcEEEEEEeCCeEEEEEHHHhhcc
Confidence 44 567888888898777765321 111111111133455444332 1122577788888888776431
Q ss_pred ---CceeEEe--cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 313 ---GESMTSI--EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 313 ---g~~l~~i--~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++-+..+ ......+..+........+++.+.++.+..|.+..+
T Consensus 727 ~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI 774 (805)
T PRK05560 727 GRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEI 774 (805)
T ss_pred CCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHC
Confidence 2223333 222344444444444556777888888888776554
No 489
>PRK13615 lipoprotein LpqB; Provisional
Probab=78.92 E-value=1.3e+02 Score=34.72 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=92.7
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-Ce
Q 005325 190 NVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SY 268 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~ 268 (702)
.+++.++++..+|....++.+.++... +.....+. ...++.-.|+++ | .+.+.-.....++..... +.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--------~~~Lt~PS~d~~-g-~vWtv~~g~~~~l~~~~~~G~ 405 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--------RPGLVAPSLDAQ-G-YVWSTPASDPRGLVAWGPDGV 405 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--------CCccccCcCcCC-C-CEEEEeCCCceEEEEecCCCc
Confidence 678999999988888778888887665 22222222 135677778877 5 555544433445444432 44
Q ss_pred EEEE-eeccCCCCeEEEEEeeccCCCCCeEEEe---CCCEEEEEeC--CCCc--ee----EEecCCCCceeEEEEEcCCC
Q 005325 269 PIRV-KDHMFDSPIVDIKWHQSINTERPKLITT---DNHIVRIWDP--ETGE--SM----TSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 269 ~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss---~Dg~V~IWd~--~tg~--~l----~~i~~h~~~I~~v~~~p~~~ 336 (702)
+..+ .+-..+.+|+.+..|+ ++-++++-. ..+.|.|--+ ..+. .+ ..+......+.++.|..++.
T Consensus 406 ~~~v~v~~~~~~~I~~lrvSr---DG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~ 482 (557)
T PRK13615 406 GHPVAVSWTATGRVVSLEVAR---DGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELD 482 (557)
T ss_pred eEEeeccccCCCeeEEEEeCC---CccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCE
Confidence 4332 1222356899999997 666665543 2455665332 2331 23 12222244889999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCCCC
Q 005325 337 LLLLAL-DCSQIPSYFIPDLGPTPK 360 (702)
Q Consensus 337 ~l~~a~-~d~~I~~~~ip~lg~ap~ 360 (702)
+++++. .+..-.++.++--|+.+.
T Consensus 483 laVl~~~~~~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 483 VATLTLAPDGERQVELHQVGGPSKD 507 (557)
T ss_pred EEEEeccCCCCceEEEEECCCcccc
Confidence 877763 344455666666666554
No 490
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=78.71 E-value=28 Score=37.40 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=60.6
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE---EEEe---eccCCCCeEEEEEeeccCCCCCeEEEeC-C------
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP---IRVK---DHMFDSPIVDIKWHQSINTERPKLITTD-N------ 302 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~---l~~~---~h~~~~~I~sl~fsp~~~~~~~ll~ss~-D------ 302 (702)
..++|+|.|+ |.+|++ ...|.|.+++ ..+.. +... ..........|+++|.+..++.+.+... .
T Consensus 3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4689999999 877665 6699999999 33332 2221 1112346799999996655566555443 1
Q ss_pred --CEEEEEeCCCC-------c-eeEEecC---CCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 303 --HIVRIWDPETG-------E-SMTSIEP---TAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 303 --g~V~IWd~~tg-------~-~l~~i~~---h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
..|.-|....+ + ++..+.. .......|.|.|++.+.++.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444444332 1 1222222 2345567999999977777666554
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=78.35 E-value=1.4e+02 Score=35.98 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEE----eccc---CC------CCCCCCeEEEEEcCCCCCEEEEE
Q 005325 187 PALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARI----NAVA---PA------GDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 187 ~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l----~~~~---~~------~~~~~~Vtslafspd~g~~LasG 253 (702)
..|.+|+....+.+++....||+|.++|..+.+.+... .... .. ...-.++..++|||+ +..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-MCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcc-cceEEEE
Confidence 45777777777789999999999999999887655444 1110 00 011124557889999 8888888
Q ss_pred eCCCeEE
Q 005325 254 SSTGKVL 260 (702)
Q Consensus 254 s~DG~V~ 260 (702)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888866
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.84 E-value=1.2e+02 Score=37.11 Aligned_cols=107 Identities=10% Similarity=-0.011 Sum_probs=66.8
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc-CCCCeEEEEEeeccCCCCCeEEEeCCC--EEEEEeCCCCcee
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM-FDSPIVDIKWHQSINTERPKLITTDNH--IVRIWDPETGESM 316 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~-~~~~I~sl~fsp~~~~~~~ll~ss~Dg--~V~IWd~~tg~~l 316 (702)
.+.+|- ..++++ +....+++||+-..+++...... ....|++++|. ..+++++-..- ....|+....+++
T Consensus 939 ~Ai~~f-~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~-----~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 939 GAICPF-QGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY-----GARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred eEEecc-CCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec-----ceEEEEeeccceEEEEEEecCCCeEE
Confidence 344565 445444 45578999999987776622111 25678899986 56677766433 3445665544443
Q ss_pred EEecC--CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 317 TSIEP--TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 317 ~~i~~--h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.+.. -+..|+++.+.. -..++.|..-|.+.+..+|.-
T Consensus 1012 -~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1012 -VFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred -EEeCCCccceeeEEEEec-CCceeeccccCcEEEEECCCc
Confidence 3332 234677665544 455888888899999988863
No 493
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.78 E-value=1.2e+02 Score=33.64 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----ceEEEeeecCC-ceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----LSLKFERHLDS-EIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----~~~~~~~h~~~-~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
-.++|.+|+||+|.+. +|.--.+..|.+++... +.......... .|..++|.+. .-+|.....| +.+|...
T Consensus 65 d~G~I~SIkFSlDnki-lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKI-LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcce-EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEc
Confidence 3578999999999998 88888999999998833 22222222233 3677777664 6666666554 6777665
Q ss_pred CceEEEec
Q 005325 136 GKHYSLRI 143 (702)
Q Consensus 136 g~~~~~~i 143 (702)
.....++.
T Consensus 141 pekrslRl 148 (657)
T KOG2377|consen 141 PEKRSLRL 148 (657)
T ss_pred hhhhhhhh
Confidence 44444444
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.53 E-value=1e+02 Score=32.62 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
...+.+++|. ..++++- .++.|.||++.++..++++..
T Consensus 243 ~~~p~~~~~~-----~pyll~~-~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH-----SPYLLAF-HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE-----CCEEEEE-cCCcEEEEECCCCceEEEEec
Confidence 3456788886 3444444 566699999999999988875
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.52 E-value=18 Score=39.73 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=89.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec-----CCCcc-----ceEEecCCCcEEEEecCCCEEEE-ECCCC
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI-----PRMGR-----DMAYNSWSCDLLCAASSPELYRI-NLEQG 176 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i-----~~~~~-----~l~~~~~s~~llv~s~d~~V~vw-dl~~g 176 (702)
++...+.||++.|...+. ..+.++......+..+- |...+ .+......-.++++..+|-|.-| |...+
T Consensus 223 v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~ 301 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRD 301 (733)
T ss_pred hHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecC
Confidence 445668899988866655 56777766543333221 22111 11123334458899999999888 54332
Q ss_pred -e----EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 177 -R----FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 177 -~----~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
. .++.++.....|..+.-..+.+-+++-+..|++.++...+.+.+-.-... ..+..+++||. +.+|+
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-------~~~~~~~~Sp~-~~~Ll 373 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-------QAPQLVAMSPN-QAYLL 373 (733)
T ss_pred CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-------cCcceeeeCcc-cchhe
Confidence 1 12222222233443332223356777778888888776554443322222 46778999999 88888
Q ss_pred EEeCCCeEEEEEcCCCeE
Q 005325 252 VGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 252 sGs~DG~V~lwDlrs~~~ 269 (702)
+ -..|.|+++.+.+..|
T Consensus 374 ~-e~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 S-EDQGKIRLAQLENRNP 390 (733)
T ss_pred e-ecCCceEEEEecCCCC
Confidence 7 4567899998877554
No 496
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=77.36 E-value=92 Score=32.08 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=38.3
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEE---EcCCCCEEEEEEcCCeEEEE
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVS---RSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~---~sp~~~llasgs~DG~V~iW 213 (702)
|++|..++.|+++|.+.-..+..+...+-++.-++ |......|++++.||.|++.
T Consensus 198 LViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 198 LVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred EEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 88999999999999998888777766654442111 21133467777888888763
No 497
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=77.22 E-value=2.1 Score=40.80 Aligned_cols=16 Identities=19% Similarity=0.352 Sum_probs=7.2
Q ss_pred ceeecccc--cccccccc
Q 005325 587 LYEVKDER--HAEAFWNS 602 (702)
Q Consensus 587 ~~~~~~~~--~~~~~~~~ 602 (702)
++.||..+ .+.+|...
T Consensus 105 ~fsIK~~dgv~assfk~g 122 (215)
T KOG3262|consen 105 HFSIKPSDGVQASSFKPG 122 (215)
T ss_pred EEEEecCCCceeecccCC
Confidence 44455333 44455443
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.82 E-value=7.2 Score=42.60 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=99.4
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE-EecccCCCCCCCCeE-EEEEcCCCCCEEEEEeCCC
Q 005325 180 SSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR-INAVAPAGDADQEVT-ALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~-l~~~~~~~~~~~~Vt-slafspd~g~~LasGs~DG 257 (702)
..+..-...|..+-..|+++.+..-+. ..+.++++.++..-.. +-.. ...+....|+ ++..-. +|..|.+++.||
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d-spg~~~~~Vte~l~lL~-Gg~SLLv~~~dG 290 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD-SPGDSRHQVTEQLYLLS-GGFSLLVVHEDG 290 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc-CCCchHHHHHHHHHHHh-CceeEEEEcCCC
Confidence 334444456778889999988877665 6788888876542111 1111 0011112333 222222 378899999999
Q ss_pred eEEEE-EcCC-CeEEE--Eeecc-CCCCeEEEEEeeccCCCCC-eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEE
Q 005325 258 KVLIY-DLRS-SYPIR--VKDHM-FDSPIVDIKWHQSINTERP-KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 258 ~V~lw-Dlrs-~~~l~--~~~h~-~~~~I~sl~fsp~~~~~~~-ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
.|.-| |++. +.|-. +.... .+.+|.-+. | .+..+ +++-...|++.++.....+++-.-.. -..+..+++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--p--e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~ 365 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--P--ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAM 365 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeec--c--ccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeee
Confidence 99877 6664 23211 22111 122333222 2 12223 33334577887777655544432222 336677889
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCCCCCCCCccCc
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPDLGPTPKWCSP 364 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsf 364 (702)
+|+...+++ -+.+.|+.|.+.+-.|--.|...
T Consensus 366 Sp~~~~Ll~-e~~gki~~~~l~Nr~PeiswsaL 397 (733)
T COG4590 366 SPNQAYLLS-EDQGKIRLAQLENRNPEISWSAL 397 (733)
T ss_pred Ccccchhee-ecCCceEEEEecCCCCCccHHHh
Confidence 998886664 56778999988877666666553
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=76.63 E-value=1.1e+02 Score=32.65 Aligned_cols=144 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred ceEEecCCCcEEEEecCCC------EEEEECCC----------CeEEEEeecCCCCeE-------EEEEcCCCCEEEEEE
Q 005325 149 DMAYNSWSCDLLCAASSPE------LYRINLEQ----------GRFLSSLNTQSPALN-------VVSRSKLHGLIACGG 205 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~------V~vwdl~~----------g~~~~~l~~h~~~V~-------~l~~sp~~~llasgs 205 (702)
.+.+.+....+++.+..+. ++.+.+.. ...+.........+. +|++.+++.++++-=
T Consensus 24 gl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~E 103 (326)
T PF13449_consen 24 GLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISSE 103 (326)
T ss_pred eEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEeC
Q ss_pred cC------CeEEEEECCCCcceeEEeccc---------CCCCCCCCeEEEEEcCCCCCEEEEEeCCC-------------
Q 005325 206 ED------GAVECFDMRMRSSAARINAVA---------PAGDADQEVTALEFDSNGGFLMGVGSSTG------------- 257 (702)
Q Consensus 206 ~D------G~V~iWD~~t~~~v~~l~~~~---------~~~~~~~~Vtslafspd~g~~LasGs~DG------------- 257 (702)
.+ ..|..++.. +..+..+..+. .....+..+-+|+++|+ |..|+++....
T Consensus 104 ~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~~~~~~~~~ 181 (326)
T PF13449_consen 104 GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDGPRANPDNG 181 (326)
T ss_pred CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCCcccccccC
Q ss_pred ---eEEEEEcCC----CeEEEEeecc-----CCCCeEEEEEeeccCCCCCeEE
Q 005325 258 ---KVLIYDLRS----SYPIRVKDHM-----FDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 258 ---~V~lwDlrs----~~~l~~~~h~-----~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
.|..||..+ .......-.. ....|+.+.+.| ++.+++
T Consensus 182 ~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~----d~~lLv 230 (326)
T PF13449_consen 182 SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP----DGRLLV 230 (326)
T ss_pred ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC----CCcEEE
No 500
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.14 E-value=52 Score=36.92 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc------CCCCeEEEEEeecc---CCCCCeEEEe--------
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM------FDSPIVDIKWHQSI---NTERPKLITT-------- 300 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~------~~~~I~sl~fsp~~---~~~~~ll~ss-------- 300 (702)
+.|+|.|+ |.+|++--..|.|++++..++....+..-. .......|+|+|.+ ..+..+.++.
T Consensus 33 w~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 33 WALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred eEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Q ss_pred --CCCEEEEEeCCCC--------ceeEEecCCCC-ceeEEEEEcCCCEEEEEeCCC
Q 005325 301 --DNHIVRIWDPETG--------ESMTSIEPTAG-KINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 301 --~Dg~V~IWd~~tg--------~~l~~i~~h~~-~I~~v~~~p~~~~l~~a~~d~ 345 (702)
....|.-|.+... .++..++.... .-..|+|.|++.++++.++.+
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Done!