Query 005325
Match_columns 702
No_of_seqs 1038 out of 4455
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 2E-36 6.9E-41 321.8 42.0 281 58-353 28-320 (321)
2 1got_B GT-beta; complex (GTP-b 100.0 6.1E-36 2.1E-40 320.1 42.9 277 60-350 53-339 (340)
3 1vyh_C Platelet-activating fac 100.0 3.3E-36 1.1E-40 331.1 41.5 279 60-352 106-409 (410)
4 2pbi_B Guanine nucleotide-bind 100.0 2.6E-35 9E-40 317.4 41.6 278 60-350 62-353 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.8E-34 6E-39 303.8 41.5 278 60-352 11-300 (304)
6 4g56_B MGC81050 protein; prote 100.0 3.9E-35 1.3E-39 316.6 36.4 285 60-358 40-347 (357)
7 4gqb_B Methylosome protein 50; 100.0 9.1E-35 3.1E-39 312.5 37.7 281 60-355 28-332 (344)
8 3iz6_a 40S ribosomal protein R 100.0 2.2E-34 7.4E-39 313.0 35.3 282 60-354 64-375 (380)
9 1nr0_A Actin interacting prote 100.0 1.7E-33 5.7E-38 325.7 43.3 317 2-354 26-355 (611)
10 4ery_A WD repeat-containing pr 100.0 6.5E-33 2.2E-37 291.6 43.2 282 60-352 21-310 (312)
11 1r5m_A SIR4-interacting protei 100.0 2.7E-33 9.4E-38 304.4 41.6 318 3-353 54-424 (425)
12 2ymu_A WD-40 repeat protein; u 100.0 8.4E-33 2.9E-37 315.2 47.1 303 3-351 271-577 (577)
13 4aow_A Guanine nucleotide-bind 100.0 9.5E-33 3.3E-37 291.9 43.8 287 52-354 27-337 (340)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-33 1E-37 299.9 40.5 292 52-356 4-337 (345)
15 1erj_A Transcriptional repress 100.0 4.6E-33 1.6E-37 303.9 42.5 294 53-355 55-390 (393)
16 3frx_A Guanine nucleotide-bind 100.0 7.6E-33 2.6E-37 293.5 42.4 285 54-354 8-317 (319)
17 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.4E-37 289.8 41.5 283 54-352 43-335 (337)
18 1nr0_A Actin interacting prote 100.0 8.4E-33 2.9E-37 319.8 43.0 317 3-354 156-567 (611)
19 2ymu_A WD-40 repeat protein; u 100.0 5.7E-32 1.9E-36 308.4 45.7 306 3-353 230-538 (577)
20 2xzm_R RACK1; ribosome, transl 100.0 3.2E-32 1.1E-36 291.4 40.6 283 53-353 11-339 (343)
21 2pm9_A Protein WEB1, protein t 100.0 5.7E-34 2E-38 310.3 26.8 314 2-353 20-413 (416)
22 3ow8_A WD repeat-containing pr 100.0 2.3E-32 7.8E-37 290.5 37.7 264 9-311 50-320 (321)
23 1vyh_C Platelet-activating fac 100.0 3.8E-32 1.3E-36 298.7 37.7 267 3-311 117-410 (410)
24 3zwl_B Eukaryotic translation 100.0 2.5E-31 8.4E-36 283.3 42.6 286 54-354 24-346 (369)
25 2hes_X YDR267CP; beta-propelle 100.0 1.6E-31 5.6E-36 284.6 40.1 285 54-353 5-327 (330)
26 4gqb_B Methylosome protein 50; 100.0 3.4E-32 1.2E-36 292.5 35.0 282 2-314 38-333 (344)
27 1got_B GT-beta; complex (GTP-b 100.0 2E-31 6.9E-36 284.9 39.2 267 3-309 64-340 (340)
28 3dm0_A Maltose-binding peripla 100.0 2.7E-31 9.2E-36 311.5 41.7 279 60-353 380-692 (694)
29 3vl1_A 26S proteasome regulato 100.0 1.9E-31 6.7E-36 291.3 36.5 310 3-353 65-418 (420)
30 3frx_A Guanine nucleotide-bind 100.0 7.9E-31 2.7E-35 278.0 38.7 275 3-313 26-318 (319)
31 3ei3_B DNA damage-binding prot 100.0 7.1E-31 2.4E-35 284.0 37.0 282 54-353 64-381 (383)
32 3vl1_A 26S proteasome regulato 100.0 2.5E-31 8.5E-36 290.4 33.8 289 60-355 54-366 (420)
33 1r5m_A SIR4-interacting protei 100.0 8.9E-31 3E-35 284.5 37.8 291 50-355 33-362 (425)
34 2ynn_A Coatomer subunit beta'; 100.0 1.1E-30 3.7E-35 274.8 37.1 250 96-354 6-259 (304)
35 2pbi_B Guanine nucleotide-bind 100.0 2.1E-30 7.1E-35 279.1 39.6 268 3-309 73-354 (354)
36 3gre_A Serine/threonine-protei 100.0 1.2E-31 4E-36 295.4 30.4 284 54-350 53-436 (437)
37 3v7d_B Cell division control p 100.0 8E-30 2.7E-34 283.0 44.6 301 5-351 131-460 (464)
38 4g56_B MGC81050 protein; prote 100.0 5.4E-31 1.8E-35 284.2 33.6 241 59-313 91-344 (357)
39 1sq9_A Antiviral protein SKI8; 100.0 7.5E-31 2.6E-35 284.1 34.8 280 60-354 14-395 (397)
40 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-30 6.1E-35 277.9 37.1 278 61-354 7-361 (372)
41 4a11_B DNA excision repair pro 100.0 1.3E-30 4.5E-35 281.9 36.3 293 61-357 42-368 (408)
42 4aow_A Guanine nucleotide-bind 100.0 6.1E-30 2.1E-34 270.3 40.3 278 3-314 47-339 (340)
43 3odt_A Protein DOA1; ubiquitin 100.0 7.1E-30 2.4E-34 266.2 40.0 277 54-354 9-296 (313)
44 1erj_A Transcriptional repress 100.0 4.6E-30 1.6E-34 280.2 38.7 290 2-312 72-389 (393)
45 2pm9_A Protein WEB1, protein t 100.0 3.1E-31 1.1E-35 288.7 28.7 289 63-357 13-340 (416)
46 3i2n_A WD repeat-containing pr 100.0 1.4E-30 4.7E-35 276.8 33.0 281 60-355 16-354 (357)
47 4ggc_A P55CDC, cell division c 100.0 3.2E-29 1.1E-33 262.1 42.6 279 65-357 28-318 (318)
48 4e54_B DNA damage-binding prot 100.0 3.6E-31 1.2E-35 292.8 29.2 284 60-354 117-430 (435)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.9E-30 2.7E-34 273.3 37.9 281 2-319 24-342 (345)
50 4gga_A P55CDC, cell division c 100.0 4.8E-29 1.7E-33 274.2 43.9 281 64-358 107-399 (420)
51 3iz6_a 40S ribosomal protein R 100.0 7.8E-31 2.7E-35 285.0 28.1 279 3-314 75-377 (380)
52 3k26_A Polycomb protein EED; W 100.0 5E-30 1.7E-34 273.2 33.1 286 60-353 16-365 (366)
53 1pgu_A Actin interacting prote 100.0 2.4E-29 8.4E-34 287.7 41.1 315 3-353 169-613 (615)
54 2xzm_R RACK1; ribosome, transl 100.0 5.1E-29 1.7E-33 266.5 38.9 271 5-313 38-341 (343)
55 1gxr_A ESG1, transducin-like e 100.0 1.3E-29 4.4E-34 266.7 33.8 278 61-355 8-297 (337)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-28 4.6E-33 272.3 43.0 299 4-354 127-442 (445)
57 4aez_A CDC20, WD repeat-contai 100.0 4.7E-29 1.6E-33 272.4 38.7 276 63-355 94-381 (401)
58 2hes_X YDR267CP; beta-propelle 100.0 6.2E-29 2.1E-33 264.7 37.0 270 9-312 26-328 (330)
59 3dw8_B Serine/threonine-protei 100.0 1.3E-29 4.4E-34 278.9 32.3 284 59-351 25-443 (447)
60 2pm7_B Protein transport prote 100.0 7.2E-29 2.5E-33 260.0 35.5 247 60-356 7-287 (297)
61 4h5i_A Guanine nucleotide-exch 100.0 2.3E-29 7.9E-34 272.3 32.5 276 62-354 14-343 (365)
62 1pgu_A Actin interacting prote 100.0 7E-29 2.4E-33 283.9 38.0 308 3-353 27-365 (615)
63 3mkq_A Coatomer beta'-subunit; 100.0 8E-29 2.7E-33 294.2 38.6 283 60-356 11-304 (814)
64 1yfq_A Cell cycle arrest prote 100.0 1.9E-29 6.6E-34 267.0 29.6 276 60-352 9-322 (342)
65 3dwl_C Actin-related protein 2 100.0 2.3E-30 7.7E-35 278.9 22.6 275 61-352 10-377 (377)
66 4gga_A P55CDC, cell division c 100.0 1.7E-28 5.9E-33 269.8 37.8 277 10-327 118-410 (420)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-28 5.9E-33 305.4 42.3 313 2-354 623-1034(1249)
68 3dm0_A Maltose-binding peripla 100.0 1.6E-28 5.4E-33 287.9 38.3 274 3-311 391-692 (694)
69 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-28 5.6E-33 305.6 40.7 318 3-356 666-1118(1249)
70 3mkq_A Coatomer beta'-subunit; 100.0 4.5E-28 1.5E-32 287.7 41.3 309 3-354 22-386 (814)
71 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-28 1.3E-32 292.9 40.1 313 2-354 25-605 (902)
72 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-28 1.3E-32 253.1 34.5 270 4-321 27-305 (313)
73 4aez_A CDC20, WD repeat-contai 100.0 1E-27 3.5E-32 261.9 38.2 269 10-320 106-388 (401)
74 3i2n_A WD repeat-containing pr 100.0 1.9E-28 6.6E-33 260.2 31.2 279 3-315 27-356 (357)
75 3zwl_B Eukaryotic translation 100.0 1.7E-27 5.8E-32 253.5 38.5 272 3-316 41-350 (369)
76 3ei3_B DNA damage-binding prot 100.0 5.8E-28 2E-32 261.1 34.7 278 3-312 82-382 (383)
77 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-28 1.3E-32 292.7 37.0 114 232-352 486-659 (902)
78 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-29 5.5E-34 286.6 23.4 303 11-353 177-516 (524)
79 4ery_A WD repeat-containing pr 100.0 1.6E-27 5.6E-32 250.3 36.2 246 97-354 17-268 (312)
80 1k8k_C P40, ARP2/3 complex 41 100.0 3.2E-28 1.1E-32 260.4 30.6 272 3-314 17-363 (372)
81 1sq9_A Antiviral protein SKI8; 100.0 8.1E-28 2.8E-32 260.2 34.2 282 8-314 27-397 (397)
82 3bg1_A Protein SEC13 homolog; 100.0 1.1E-28 3.9E-33 261.0 26.5 248 60-354 11-293 (316)
83 4e54_B DNA damage-binding prot 100.0 1.7E-28 5.7E-33 271.4 28.0 284 3-315 128-433 (435)
84 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-27 5.5E-32 263.2 35.5 268 60-354 131-414 (435)
85 3k26_A Polycomb protein EED; W 100.0 5.5E-28 1.9E-32 257.3 30.3 275 4-312 31-366 (366)
86 3v7d_B Cell division control p 100.0 8.2E-27 2.8E-31 258.7 40.9 271 61-355 120-422 (464)
87 3jrp_A Fusion protein of prote 100.0 1.4E-27 4.9E-32 255.3 33.4 241 60-354 9-287 (379)
88 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-27 6.5E-32 249.9 32.5 258 60-355 9-338 (351)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-27 9.3E-32 262.7 35.2 298 2-354 12-391 (450)
90 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-27 5E-32 257.0 31.6 285 60-366 17-348 (355)
91 4ggc_A P55CDC, cell division c 100.0 7.6E-27 2.6E-31 244.1 36.1 264 10-314 38-317 (318)
92 3mmy_A MRNA export factor; mRN 100.0 2.1E-27 7.1E-32 252.7 32.2 281 60-354 37-346 (368)
93 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-26 7E-31 254.7 40.2 268 61-355 117-392 (445)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-28 2.2E-32 263.2 26.1 279 63-354 35-342 (402)
95 2xyi_A Probable histone-bindin 100.0 5E-27 1.7E-31 259.2 31.0 258 51-354 117-410 (430)
96 4a11_B DNA excision repair pro 100.0 1.8E-26 6.2E-31 249.4 33.9 328 3-355 52-406 (408)
97 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-28 1E-32 276.1 20.5 259 59-352 130-426 (524)
98 1l0q_A Surface layer protein; 100.0 7.2E-25 2.4E-29 237.0 41.0 275 10-325 5-288 (391)
99 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-26 2.4E-30 250.0 33.1 275 4-333 141-434 (435)
100 3bws_A Protein LP49; two-domai 99.9 3.6E-25 1.2E-29 242.7 38.1 284 53-354 113-432 (433)
101 3gre_A Serine/threonine-protei 99.9 1.4E-26 4.8E-31 254.8 26.1 272 69-355 34-360 (437)
102 3dw8_B Serine/threonine-protei 99.9 1E-25 3.5E-30 247.7 31.6 291 3-311 37-445 (447)
103 2aq5_A Coronin-1A; WD40 repeat 99.9 4.8E-26 1.6E-30 248.3 28.6 266 13-314 53-344 (402)
104 4h5i_A Guanine nucleotide-exch 99.9 6.4E-26 2.2E-30 245.2 29.3 236 61-312 72-343 (365)
105 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-26 3.6E-31 248.3 22.7 238 69-354 43-292 (343)
106 2pm7_B Protein transport prote 99.9 1.8E-25 6.3E-30 234.0 31.1 236 2-311 17-284 (297)
107 2j04_A TAU60, YPL007P, hypothe 99.9 2.7E-26 9.2E-31 256.5 26.0 264 60-353 13-296 (588)
108 3jro_A Fusion protein of prote 99.9 5E-26 1.7E-30 269.5 27.8 241 60-354 7-285 (753)
109 3dwl_C Actin-related protein 2 99.9 1.3E-26 4.5E-31 249.4 19.6 234 108-353 14-280 (377)
110 3mmy_A MRNA export factor; mRN 99.9 6.2E-25 2.1E-29 233.5 30.9 277 3-310 48-344 (368)
111 1yfq_A Cell cycle arrest prote 99.9 7.5E-25 2.6E-29 231.6 31.1 271 3-309 20-321 (342)
112 4gq1_A NUP37; propeller, trans 99.9 3.3E-25 1.1E-29 241.9 28.6 302 3-352 27-387 (393)
113 1l0q_A Surface layer protein; 99.9 9.4E-24 3.2E-28 228.2 38.8 264 75-354 2-275 (391)
114 3f3f_A Nucleoporin SEH1; struc 99.9 1.9E-24 6.4E-29 226.9 30.8 253 3-319 20-344 (351)
115 3bg1_A Protein SEC13 homolog; 99.9 2.1E-25 7E-30 235.9 22.6 233 3-311 22-292 (316)
116 2w18_A PALB2, fancn, partner a 99.9 1E-23 3.6E-28 222.3 34.1 271 51-352 23-355 (356)
117 3lrv_A PRE-mRNA-splicing facto 99.9 8.8E-25 3E-29 233.4 25.2 256 9-351 50-330 (343)
118 3jrp_A Fusion protein of prote 99.9 1E-23 3.5E-28 225.4 33.0 240 3-316 20-291 (379)
119 3vu4_A KMHSV2; beta-propeller 99.9 9.1E-24 3.1E-28 227.3 31.9 265 3-312 28-336 (355)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-23 4E-28 233.4 31.7 194 147-352 105-337 (450)
121 2j04_A TAU60, YPL007P, hypothe 99.9 1.8E-24 6.1E-29 241.8 22.6 254 60-344 50-351 (588)
122 2xyi_A Probable histone-bindin 99.9 9.4E-23 3.2E-27 225.0 30.5 242 3-312 137-410 (430)
123 3bws_A Protein LP49; two-domai 99.9 3.1E-22 1.1E-26 219.3 34.2 236 60-312 167-432 (433)
124 3jro_A Fusion protein of prote 99.9 3.8E-22 1.3E-26 236.2 26.9 237 2-312 17-285 (753)
125 1nir_A Nitrite reductase; hemo 99.9 1.2E-20 4.2E-25 214.8 37.2 315 3-355 146-515 (543)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-20 5.3E-25 206.6 32.3 233 85-335 159-409 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.3E-21 4.3E-26 213.5 22.4 258 9-311 103-388 (393)
128 2w18_A PALB2, fancn, partner a 99.9 3.6E-20 1.2E-24 195.4 31.1 214 64-310 113-355 (356)
129 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.8E-24 192.7 34.9 276 59-345 37-335 (353)
130 1ri6_A Putative isomerase YBHE 99.9 4.9E-19 1.7E-23 186.4 37.5 291 14-335 12-334 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-20 3.6E-25 208.0 24.5 272 63-352 63-385 (415)
132 3u4y_A Uncharacterized protein 99.9 4.7E-19 1.6E-23 186.6 34.7 283 1-321 4-312 (331)
133 3u4y_A Uncharacterized protein 99.9 8.9E-19 3E-23 184.5 36.7 277 68-354 3-304 (331)
134 1nir_A Nitrite reductase; hemo 99.9 2E-19 6.7E-24 204.8 33.6 274 69-356 144-460 (543)
135 1pby_B Quinohemoprotein amine 99.9 3E-19 1E-23 187.6 31.8 272 9-322 3-320 (337)
136 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-19 7.5E-24 211.2 31.7 267 63-344 109-445 (741)
137 2ojh_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 185.3 25.1 233 60-345 39-293 (297)
138 2ecf_A Dipeptidyl peptidase IV 99.8 4.7E-19 1.6E-23 208.4 29.7 279 62-354 36-413 (741)
139 1ri6_A Putative isomerase YBHE 99.8 2.2E-18 7.6E-23 181.4 31.5 267 74-353 4-307 (343)
140 3vgz_A Uncharacterized protein 99.8 6.7E-18 2.3E-22 178.9 33.9 228 61-302 87-334 (353)
141 1xfd_A DIP, dipeptidyl aminope 99.8 4.1E-19 1.4E-23 208.1 25.0 307 2-346 24-432 (723)
142 1pby_B Quinohemoprotein amine 99.8 3.3E-18 1.1E-22 179.6 29.3 261 77-354 3-310 (337)
143 1xfd_A DIP, dipeptidyl aminope 99.8 9.5E-19 3.2E-23 205.1 27.6 287 61-354 15-393 (723)
144 1k32_A Tricorn protease; prote 99.8 2.6E-18 8.8E-23 210.6 30.1 269 59-351 200-499 (1045)
145 2z3z_A Dipeptidyl aminopeptida 99.8 6.6E-18 2.3E-22 197.5 31.9 276 63-353 82-434 (706)
146 1k32_A Tricorn protease; prote 99.8 4.6E-18 1.6E-22 208.4 31.6 223 113-353 211-460 (1045)
147 1jmx_B Amine dehydrogenase; ox 99.8 4.5E-17 1.5E-21 172.0 33.4 277 4-322 8-335 (349)
148 3o4h_A Acylamino-acid-releasin 99.8 7.5E-18 2.6E-22 192.9 27.2 261 62-347 21-305 (582)
149 2z3z_A Dipeptidyl aminopeptida 99.8 2.5E-17 8.6E-22 192.6 30.2 302 3-351 90-473 (706)
150 3hfq_A Uncharacterized protein 99.8 1.6E-16 5.6E-21 168.8 33.2 252 61-353 38-316 (347)
151 3scy_A Hypothetical bacterial 99.8 4.6E-16 1.6E-20 166.4 34.0 259 61-332 48-360 (361)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 2.8E-17 9.7E-22 181.8 21.4 247 63-353 37-332 (434)
153 1z68_A Fibroblast activation p 99.7 2.4E-17 8.4E-22 193.3 20.3 301 3-343 24-429 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.7 8E-17 2.7E-21 178.2 19.3 162 185-355 91-279 (434)
155 2ojh_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 158.5 23.7 210 79-344 16-237 (297)
156 1jmx_B Amine dehydrogenase; ox 99.7 1.8E-15 6E-20 159.7 28.1 274 67-354 4-325 (349)
157 3scy_A Hypothetical bacterial 99.7 9.5E-15 3.2E-19 156.2 34.1 264 78-353 16-336 (361)
158 1z68_A Fibroblast activation p 99.7 9.9E-17 3.4E-21 188.1 20.0 283 61-354 14-391 (719)
159 3pe7_A Oligogalacturonate lyas 99.7 1.3E-15 4.4E-20 164.0 25.4 275 68-353 41-381 (388)
160 3o4h_A Acylamino-acid-releasin 99.7 8.1E-16 2.8E-20 175.9 24.6 261 2-312 29-315 (582)
161 3hfq_A Uncharacterized protein 99.7 2.6E-14 9E-19 151.7 31.8 236 3-271 48-324 (347)
162 2oiz_A Aromatic amine dehydrog 99.7 4.7E-14 1.6E-18 151.9 31.9 261 67-336 54-360 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 1E-13 3.5E-18 149.0 32.9 267 78-353 5-340 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.6 1.1E-13 3.6E-18 163.3 32.1 298 3-344 25-436 (740)
165 3c5m_A Oligogalacturonate lyas 99.6 3.5E-14 1.2E-18 152.6 24.5 274 65-353 38-381 (396)
166 1q7f_A NHL, brain tumor CG1071 99.6 6.4E-13 2.2E-17 137.0 33.0 238 63-314 30-282 (286)
167 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.4E-13 1.5E-17 144.0 31.9 246 63-313 40-342 (365)
168 1q7f_A NHL, brain tumor CG1071 99.6 1E-12 3.5E-17 135.5 32.7 236 108-357 32-283 (286)
169 4a5s_A Dipeptidyl peptidase 4 99.6 7.9E-14 2.7E-18 164.4 25.7 281 61-353 15-397 (740)
170 3fvz_A Peptidyl-glycine alpha- 99.6 1.5E-12 5.2E-17 137.9 32.4 169 185-354 141-322 (329)
171 3azo_A Aminopeptidase; POP fam 99.6 2.8E-13 9.6E-18 157.0 29.0 273 71-352 87-409 (662)
172 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.2E-16 124.6 39.3 272 63-352 15-293 (299)
173 3pe7_A Oligogalacturonate lyas 99.6 2.5E-13 8.6E-18 146.0 24.9 238 66-310 84-380 (388)
174 3azo_A Aminopeptidase; POP fam 99.6 3E-13 1E-17 156.8 26.7 278 61-353 22-366 (662)
175 2gop_A Trilobed protease; beta 99.5 1.8E-12 6.1E-17 137.2 27.2 257 63-353 15-330 (347)
176 3e5z_A Putative gluconolactona 99.5 3E-12 1E-16 132.9 28.2 225 63-345 28-278 (296)
177 2oiz_A Aromatic amine dehydrog 99.5 4.3E-12 1.5E-16 136.5 29.1 271 72-354 13-334 (361)
178 2dg1_A DRP35, lactonase; beta 99.5 4.3E-12 1.5E-16 133.6 28.6 263 64-344 7-300 (333)
179 3dsm_A Uncharacterized protein 99.5 8.4E-12 2.9E-16 132.3 30.1 247 64-331 45-319 (328)
180 3c5m_A Oligogalacturonate lyas 99.5 1.6E-12 5.6E-17 139.5 23.3 233 67-314 85-386 (396)
181 2gop_A Trilobed protease; beta 99.5 2.2E-11 7.5E-16 128.7 28.8 231 63-325 59-342 (347)
182 1qks_A Cytochrome CD1 nitrite 99.5 2.8E-10 9.7E-15 129.5 38.8 306 14-354 174-538 (567)
183 2xdw_A Prolyl endopeptidase; a 99.4 6.4E-11 2.2E-15 138.8 34.0 270 72-353 81-413 (710)
184 3sjl_D Methylamine dehydrogena 99.4 4.1E-11 1.4E-15 129.1 29.4 259 68-334 83-384 (386)
185 2qc5_A Streptogramin B lactona 99.4 7.1E-10 2.4E-14 113.9 37.5 271 63-351 20-297 (300)
186 2z2n_A Virginiamycin B lyase; 99.4 4.9E-10 1.7E-14 115.0 35.7 235 63-313 57-296 (299)
187 3no2_A Uncharacterized protein 99.4 4.7E-11 1.6E-15 123.5 27.5 217 74-342 5-231 (276)
188 1rwi_B Serine/threonine-protei 99.4 2.5E-11 8.5E-16 123.5 24.6 243 59-354 20-264 (270)
189 2mad_H Methylamine dehydrogena 99.4 1E-09 3.5E-14 118.6 38.3 244 67-319 70-357 (373)
190 3dsm_A Uncharacterized protein 99.4 8.6E-11 2.9E-15 124.4 28.9 254 83-352 15-300 (328)
191 2xdw_A Prolyl endopeptidase; a 99.4 6.4E-11 2.2E-15 138.8 29.6 233 2-268 132-416 (710)
192 1qks_A Cytochrome CD1 nitrite 99.4 8.7E-10 3E-14 125.5 36.6 272 74-355 166-478 (567)
193 3fvz_A Peptidyl-glycine alpha- 99.4 9E-11 3.1E-15 124.1 26.2 196 63-266 91-322 (329)
194 2bkl_A Prolyl endopeptidase; m 99.4 8.9E-11 3E-15 137.3 27.7 269 71-353 76-396 (695)
195 2bkl_A Prolyl endopeptidase; m 99.4 5.5E-11 1.9E-15 139.0 25.0 242 62-315 120-400 (695)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1E-09 3.5E-14 113.9 29.7 232 110-355 22-300 (314)
197 2mad_H Methylamine dehydrogena 99.3 6.3E-09 2.1E-13 112.3 36.1 272 69-354 27-350 (373)
198 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.5E-09 1.2E-13 113.6 31.4 257 73-351 102-375 (376)
199 3no2_A Uncharacterized protein 99.3 2.4E-09 8.1E-14 110.6 28.9 244 10-286 8-273 (276)
200 3c75_H MADH, methylamine dehyd 99.3 1.1E-09 3.9E-14 119.7 27.7 247 67-320 122-410 (426)
201 3dr2_A Exported gluconolactona 99.3 1.8E-09 6.3E-14 112.6 28.1 234 64-352 46-304 (305)
202 3sjl_D Methylamine dehydrogena 99.3 2.9E-09 1E-13 114.6 30.1 274 68-355 38-364 (386)
203 3g4e_A Regucalcin; six bladed 99.3 4.1E-09 1.4E-13 109.6 30.3 224 65-344 15-262 (297)
204 2dg1_A DRP35, lactonase; beta 99.3 2.4E-10 8.3E-15 120.1 21.0 228 112-352 12-261 (333)
205 1yr2_A Prolyl oligopeptidase; 99.2 1.3E-09 4.5E-14 128.3 27.6 232 107-353 164-440 (741)
206 2qc5_A Streptogramin B lactona 99.2 2.5E-08 8.6E-13 102.2 33.9 232 63-310 62-298 (300)
207 3c75_H MADH, methylamine dehyd 99.2 6E-09 2.1E-13 114.0 29.8 271 72-355 82-403 (426)
208 1yr2_A Prolyl oligopeptidase; 99.2 2.7E-09 9.3E-14 125.6 29.0 239 64-315 164-444 (741)
209 1xip_A Nucleoporin NUP159; bet 99.2 3.2E-10 1.1E-14 122.5 18.2 133 185-340 87-230 (388)
210 1kb0_A Quinohemoprotein alcoho 99.2 5.8E-09 2E-13 121.5 30.2 279 73-360 127-573 (677)
211 1rwi_B Serine/threonine-protei 99.2 3E-09 1E-13 107.9 24.3 196 63-268 67-266 (270)
212 2ghs_A AGR_C_1268P; regucalcin 99.2 2.6E-08 8.9E-13 105.1 32.4 222 65-345 51-293 (326)
213 3hrp_A Uncharacterized protein 99.2 1.5E-08 5.3E-13 110.6 31.0 237 64-310 132-408 (409)
214 3hxj_A Pyrrolo-quinoline quino 99.2 2E-09 6.7E-14 112.6 22.1 261 65-354 62-324 (330)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.3E-08 4.5E-13 105.4 27.7 232 65-312 20-299 (314)
216 3e5z_A Putative gluconolactona 99.1 3.1E-09 1E-13 110.0 22.2 189 149-351 32-243 (296)
217 1yiq_A Quinohemoprotein alcoho 99.1 6.2E-08 2.1E-12 113.0 32.2 258 74-340 121-534 (689)
218 3hrp_A Uncharacterized protein 99.1 3E-08 1E-12 108.3 27.1 236 108-352 133-408 (409)
219 3g4e_A Regucalcin; six bladed 99.1 5E-08 1.7E-12 101.3 26.9 186 60-255 51-261 (297)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.1 2.6E-07 8.9E-12 98.9 33.3 261 74-354 53-337 (376)
221 1xip_A Nucleoporin NUP159; bet 99.0 4.3E-09 1.5E-13 113.6 17.5 162 107-288 39-223 (388)
222 1mda_H Methylamine dehydrogena 99.0 8.7E-09 3E-13 110.7 19.8 251 67-333 69-366 (368)
223 2hz6_A Endoplasmic reticulum t 99.0 2.5E-11 8.4E-16 131.1 -3.2 253 73-352 8-277 (369)
224 2ghs_A AGR_C_1268P; regucalcin 99.0 2.9E-07 9.8E-12 97.1 28.3 185 60-256 87-292 (326)
225 2qe8_A Uncharacterized protein 98.9 2.4E-07 8.2E-12 98.3 26.1 235 51-300 7-308 (343)
226 1kb0_A Quinohemoprotein alcoho 98.9 2E-07 7E-12 108.4 27.6 273 74-354 77-507 (677)
227 3hxj_A Pyrrolo-quinoline quino 98.9 1.6E-08 5.4E-13 105.6 16.6 256 67-351 24-281 (330)
228 3iuj_A Prolyl endopeptidase; h 98.9 1.2E-07 4.2E-12 110.7 25.8 229 107-352 130-403 (693)
229 2ece_A 462AA long hypothetical 98.9 4.4E-07 1.5E-11 98.6 28.1 234 66-342 85-399 (462)
230 1yiq_A Quinohemoprotein alcoho 98.9 2.9E-07 1E-11 107.3 27.3 273 74-354 70-505 (689)
231 3iuj_A Prolyl endopeptidase; h 98.9 4E-07 1.4E-11 106.3 28.0 236 63-315 129-408 (693)
232 2hz6_A Endoplasmic reticulum t 98.8 2.2E-09 7.5E-14 115.7 6.2 196 116-328 8-207 (369)
233 1npe_A Nidogen, entactin; glyc 98.8 1.8E-05 6.3E-10 80.2 34.5 246 74-336 1-263 (267)
234 2ad6_A Methanol dehydrogenase 98.8 1.6E-06 5.4E-11 98.8 28.7 257 74-339 115-522 (571)
235 1kv9_A Type II quinohemoprotei 98.8 2.9E-06 9.9E-11 98.6 31.3 283 74-365 117-563 (668)
236 1mda_H Methylamine dehydrogena 98.8 2.6E-07 8.9E-12 99.2 20.0 258 73-355 30-347 (368)
237 1flg_A Protein (quinoprotein e 98.7 9.6E-06 3.3E-10 92.5 32.3 167 166-339 291-544 (582)
238 2iwa_A Glutamine cyclotransfer 98.7 3.2E-06 1.1E-10 86.3 25.3 212 52-267 8-238 (266)
239 2qe8_A Uncharacterized protein 98.7 9.7E-07 3.3E-11 93.6 21.5 229 108-346 19-313 (343)
240 1w6s_A Methanol dehydrogenase 98.7 2.3E-05 7.8E-10 89.5 33.7 251 78-336 124-528 (599)
241 3dr2_A Exported gluconolactona 98.6 2.4E-06 8.3E-11 88.7 21.1 187 62-260 85-301 (305)
242 4a2l_A BT_4663, two-component 98.6 0.00023 7.7E-09 84.2 40.0 273 63-351 215-523 (795)
243 3nol_A Glutamine cyclotransfer 98.6 6E-06 2E-10 83.5 22.2 196 52-254 30-243 (262)
244 4a2l_A BT_4663, two-component 98.6 0.00025 8.5E-09 83.8 40.0 270 63-351 263-568 (795)
245 1fwx_A Nitrous oxide reductase 98.6 9.9E-07 3.4E-11 99.0 17.9 238 72-345 99-409 (595)
246 1npe_A Nidogen, entactin; glyc 98.6 5.5E-05 1.9E-09 76.6 29.2 215 64-288 37-260 (267)
247 3nok_A Glutaminyl cyclase; bet 98.5 8.2E-06 2.8E-10 82.5 20.9 197 49-253 39-253 (268)
248 3mbr_X Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 77.3 25.0 195 52-254 8-222 (243)
249 2fp8_A Strictosidine synthase; 98.5 3.4E-05 1.2E-09 80.6 26.1 225 112-354 25-313 (322)
250 1kv9_A Type II quinohemoprotei 98.5 4.9E-05 1.7E-09 88.2 29.7 272 74-353 66-487 (668)
251 2iwa_A Glutamine cyclotransfer 98.5 5.4E-05 1.9E-09 77.1 25.9 192 148-355 24-238 (266)
252 3nol_A Glutamine cyclotransfer 98.5 8.4E-06 2.9E-10 82.4 19.2 178 149-344 47-245 (262)
253 2ad6_A Methanol dehydrogenase 98.4 7.3E-05 2.5E-09 85.0 28.5 269 78-354 65-494 (571)
254 1w6s_A Methanol dehydrogenase 98.4 8.6E-05 2.9E-09 84.8 28.4 271 74-354 62-503 (599)
255 3mbr_X Glutamine cyclotransfer 98.4 0.00014 4.7E-09 72.9 25.5 185 149-351 25-232 (243)
256 2p4o_A Hypothetical protein; p 98.4 0.00025 8.4E-09 73.6 28.7 244 52-345 21-279 (306)
257 3nok_A Glutaminyl cyclase; bet 98.3 2.4E-05 8.2E-10 79.1 19.4 176 149-343 59-254 (268)
258 3v9f_A Two-component system se 98.3 0.0016 5.5E-08 76.7 37.1 272 63-350 313-607 (781)
259 2fp8_A Strictosidine synthase; 98.3 0.00073 2.5E-08 70.3 30.2 230 65-311 21-312 (322)
260 3v65_B Low-density lipoprotein 98.3 0.0017 5.9E-08 69.8 33.6 253 64-332 78-338 (386)
261 3v64_C Agrin; beta propeller, 98.3 0.0015 5.1E-08 69.2 32.7 254 62-331 33-294 (349)
262 1flg_A Protein (quinoprotein e 98.3 0.00044 1.5E-08 78.7 29.7 268 79-354 72-516 (582)
263 3v9f_A Two-component system se 98.3 0.0015 5.3E-08 76.8 35.4 270 63-350 258-564 (781)
264 1k3i_A Galactose oxidase precu 98.2 6.8E-05 2.3E-09 86.8 23.2 275 61-343 184-530 (656)
265 3ei3_A DNA damage-binding prot 98.2 0.0025 8.5E-08 78.1 37.1 277 75-365 618-975 (1158)
266 2xbg_A YCF48-like protein; pho 98.2 0.0062 2.1E-07 63.7 35.2 269 62-351 35-319 (327)
267 1ijq_A LDL receptor, low-densi 98.2 0.0061 2.1E-07 63.4 34.6 225 85-321 10-247 (316)
268 1fwx_A Nitrous oxide reductase 98.2 6.5E-05 2.2E-09 84.3 19.6 183 158-354 103-361 (595)
269 2ece_A 462AA long hypothetical 98.1 0.00011 3.7E-09 79.9 20.1 187 159-353 98-351 (462)
270 3qqz_A Putative uncharacterize 98.1 0.001 3.5E-08 67.3 25.8 196 149-350 31-249 (255)
271 3p5b_L Low density lipoprotein 98.0 0.014 4.7E-07 63.0 34.7 235 84-331 91-339 (400)
272 3v65_B Low-density lipoprotein 98.0 0.0025 8.6E-08 68.5 28.7 217 125-352 94-316 (386)
273 3v64_C Agrin; beta propeller, 98.0 0.0047 1.6E-07 65.4 29.8 215 126-351 52-272 (349)
274 1ijq_A LDL receptor, low-densi 97.9 0.018 6.2E-07 59.8 32.2 227 11-271 4-243 (316)
275 2xe4_A Oligopeptidase B; hydro 97.9 0.00042 1.4E-08 81.5 20.4 200 64-310 175-398 (751)
276 2p4o_A Hypothetical protein; p 97.8 0.0053 1.8E-07 63.3 25.2 188 60-257 69-279 (306)
277 3m0c_C LDL receptor, low-densi 97.8 0.039 1.3E-06 64.8 34.9 226 84-321 403-641 (791)
278 3sov_A LRP-6, low-density lipo 97.8 0.034 1.1E-06 57.9 31.1 235 84-331 12-257 (318)
279 3p5b_L Low density lipoprotein 97.8 0.038 1.3E-06 59.5 32.4 202 63-271 112-325 (400)
280 2xe4_A Oligopeptidase B; hydro 97.8 0.0006 2.1E-08 80.1 19.5 171 168-353 203-397 (751)
281 3tc9_A Hypothetical hydrolase; 97.7 0.018 6.3E-07 62.6 29.2 240 64-310 138-428 (430)
282 4hw6_A Hypothetical protein, I 97.7 0.012 4.2E-07 64.2 27.2 238 65-310 141-431 (433)
283 3ei3_A DNA damage-binding prot 97.7 0.11 3.7E-06 63.7 37.6 326 10-354 486-913 (1158)
284 3qqz_A Putative uncharacterize 97.6 0.038 1.3E-06 55.6 27.6 211 61-311 25-252 (255)
285 3amr_A 3-phytase; beta-propell 97.6 0.018 6E-07 60.6 24.7 201 110-320 30-272 (355)
286 4a0p_A LRP6, LRP-6, low-densit 97.6 0.16 5.4E-06 58.1 35.1 230 76-321 8-246 (628)
287 3sov_A LRP-6, low-density lipo 97.6 0.034 1.2E-06 57.9 27.3 198 64-271 36-243 (318)
288 3amr_A 3-phytase; beta-propell 97.5 0.013 4.3E-07 61.7 22.4 185 159-352 43-261 (355)
289 3m0c_C LDL receptor, low-densi 97.5 0.1 3.5E-06 61.2 32.7 202 63-271 424-637 (791)
290 1k3i_A Galactose oxidase precu 97.5 0.0033 1.1E-07 72.6 19.4 201 64-271 244-502 (656)
291 1n7d_A LDL receptor, low-densi 97.4 0.00054 1.9E-08 79.7 12.2 236 84-331 385-633 (699)
292 3tc9_A Hypothetical hydrolase; 97.4 0.037 1.2E-06 60.3 25.4 233 110-351 141-427 (430)
293 4hw6_A Hypothetical protein, I 97.3 0.061 2.1E-06 58.6 26.5 233 111-351 144-430 (433)
294 2xzh_A Clathrin heavy chain 1; 97.3 0.22 7.4E-06 51.6 32.4 250 85-354 49-332 (365)
295 3kya_A Putative phosphatase; s 97.3 0.17 6E-06 55.7 29.6 208 65-274 141-417 (496)
296 2vpj_A Kelch-like protein 12; 97.3 0.024 8.3E-07 57.9 21.3 220 77-313 17-279 (301)
297 2p9w_A MAL S 1 allergenic prot 97.2 0.032 1.1E-06 58.1 21.5 163 146-312 14-215 (334)
298 3ott_A Two-component system se 97.2 0.48 1.6E-05 55.1 34.3 262 62-345 21-299 (758)
299 3s94_A LRP-6, low-density lipo 97.2 0.5 1.7E-05 53.8 34.5 153 63-218 84-244 (619)
300 3ii7_A Kelch-like protein 7; p 97.2 0.065 2.2E-06 54.8 23.6 225 74-313 11-273 (306)
301 1bpo_A Protein (clathrin); cla 97.2 0.36 1.2E-05 51.9 32.1 252 85-354 48-331 (494)
302 2xbg_A YCF48-like protein; pho 97.1 0.19 6.5E-06 52.2 26.5 218 110-347 40-272 (327)
303 3s94_A LRP-6, low-density lipo 97.1 0.59 2E-05 53.2 32.5 195 65-268 42-245 (619)
304 1n7d_A LDL receptor, low-densi 97.0 0.0028 9.6E-08 73.7 12.1 202 64-272 407-620 (699)
305 2xn4_A Kelch-like protein 2; s 97.0 0.043 1.5E-06 56.1 19.8 223 76-313 17-277 (302)
306 2p9w_A MAL S 1 allergenic prot 97.0 0.16 5.5E-06 52.8 23.7 155 110-267 18-216 (334)
307 2xzh_A Clathrin heavy chain 1; 96.9 0.54 1.8E-05 48.7 26.5 201 56-268 100-334 (365)
308 3kya_A Putative phosphatase; s 96.9 0.28 9.7E-06 54.0 25.9 237 109-354 142-475 (496)
309 2ism_A Putative oxidoreductase 96.8 0.26 8.8E-06 51.9 24.8 217 110-342 35-333 (352)
310 3ii7_A Kelch-like protein 7; p 96.8 0.17 5.8E-06 51.6 22.7 188 73-271 55-277 (306)
311 2xn4_A Kelch-like protein 2; s 96.8 0.17 5.8E-06 51.5 22.3 187 73-271 61-281 (302)
312 3pbp_A Nucleoporin NUP82; beta 96.7 0.11 3.7E-06 55.8 20.3 149 196-350 30-208 (452)
313 1bpo_A Protein (clathrin); cla 96.7 0.94 3.2E-05 48.7 31.2 199 67-272 70-295 (494)
314 2vpj_A Kelch-like protein 12; 96.7 0.19 6.4E-06 51.1 21.6 136 166-314 78-233 (301)
315 4asc_A Kelch repeat and BTB do 96.7 0.25 8.6E-06 50.6 22.6 188 76-273 6-228 (315)
316 4asc_A Kelch repeat and BTB do 96.6 0.25 8.4E-06 50.7 21.8 175 87-272 69-283 (315)
317 1zgk_A Kelch-like ECH-associat 96.5 0.16 5.3E-06 52.1 20.1 186 73-272 24-246 (308)
318 2ism_A Putative oxidoreductase 96.5 1.1 3.6E-05 47.1 26.4 216 65-300 33-332 (352)
319 4a0p_A LRP6, LRP-6, low-densit 96.3 2.1 7.2E-05 48.7 40.0 152 64-219 81-239 (628)
320 2be1_A Serine/threonine-protei 96.0 0.62 2.1E-05 48.7 21.2 150 158-317 57-236 (339)
321 1xi4_A Clathrin heavy chain; a 95.9 0.26 8.9E-06 60.3 19.6 252 85-357 48-334 (1630)
322 1zgk_A Kelch-like ECH-associat 95.9 0.4 1.4E-05 48.9 19.0 136 166-314 90-242 (308)
323 3pbp_A Nucleoporin NUP82; beta 95.9 0.96 3.3E-05 48.5 21.8 146 113-262 28-208 (452)
324 3ott_A Two-component system se 95.8 3.9 0.00013 47.3 35.8 258 63-345 63-344 (758)
325 2woz_A Kelch repeat and BTB do 95.8 0.75 2.6E-05 47.0 20.5 185 76-272 17-237 (318)
326 2be1_A Serine/threonine-protei 95.7 0.13 4.4E-06 53.9 14.4 200 78-282 13-246 (339)
327 2woz_A Kelch repeat and BTB do 95.6 1.5 5.3E-05 44.6 22.1 191 70-272 53-293 (318)
328 3a9g_A Putative uncharacterize 95.5 3 0.0001 43.6 26.1 225 108-342 32-330 (354)
329 3sre_A PON1, serum paraoxonase 95.4 1.2 4.1E-05 46.9 20.6 181 125-320 81-308 (355)
330 2uvk_A YJHT; unknown function, 95.3 2.1 7E-05 44.4 22.2 145 166-320 168-350 (357)
331 1tl2_A L10, protein (tachylect 95.2 0.83 2.8E-05 44.6 16.8 155 188-361 42-216 (236)
332 3sre_A PON1, serum paraoxonase 94.4 5.8 0.0002 41.5 23.7 177 164-350 81-294 (355)
333 2uvk_A YJHT; unknown function, 94.4 1.3 4.4E-05 46.0 17.6 99 166-270 86-232 (357)
334 3a9g_A Putative uncharacterize 94.4 3.5 0.00012 43.1 20.9 147 186-344 28-217 (354)
335 3das_A Putative oxidoreductase 94.3 3.6 0.00012 43.0 20.6 115 181-299 26-156 (347)
336 1b34_A Protein (small nuclear 94.1 0.0091 3.1E-07 52.7 0.0 13 585-597 14-26 (119)
337 3s25_A Hypothetical 7-bladed b 94.0 6.1 0.00021 40.3 26.3 179 67-268 57-257 (302)
338 2g8s_A Glucose/sorbosone dehyd 93.8 7.5 0.00026 40.5 25.9 222 65-301 20-341 (353)
339 2zwa_A Leucine carboxyl methyl 93.8 3 0.0001 48.0 20.5 153 115-268 396-579 (695)
340 1cru_A Protein (soluble quinop 93.6 6.4 0.00022 42.7 21.9 111 186-300 26-161 (454)
341 2g8s_A Glucose/sorbosone dehyd 93.1 3.8 0.00013 42.7 18.5 149 187-344 18-217 (353)
342 1xi4_A Clathrin heavy chain; a 92.8 3.1 0.00011 51.2 18.7 217 128-354 49-289 (1630)
343 1tl2_A L10, protein (tachylect 92.7 1.3 4.4E-05 43.3 12.7 146 198-361 4-169 (236)
344 3qhy_B Beta-lactamase inhibito 92.1 4 0.00014 41.2 16.4 210 118-356 34-248 (282)
345 2zwa_A Leucine carboxyl methyl 91.3 16 0.00054 41.9 22.2 193 72-270 396-639 (695)
346 3s25_A Hypothetical 7-bladed b 90.9 15 0.00052 37.3 28.0 235 70-342 21-280 (302)
347 3qhy_B Beta-lactamase inhibito 90.5 11 0.00037 37.9 17.8 235 65-335 26-265 (282)
348 3uc1_A DNA gyrase subunit A; D 88.9 23 0.00079 36.4 22.4 196 153-357 50-282 (327)
349 3u5c_h Suppressor protein STM1 87.7 0.1 3.6E-06 52.0 0.0 14 682-695 233-246 (273)
350 3b7f_A Glycosyl hydrolase, BNR 86.4 34 0.0012 35.6 29.7 193 150-347 120-365 (394)
351 1b34_A Protein (small nuclear 85.9 0.15 5.1E-06 44.8 0.0 7 696-702 112-118 (119)
352 3no0_A DNA gyrase subunit A; D 85.7 31 0.0011 34.5 24.0 191 155-356 34-248 (276)
353 1cru_A Protein (soluble quinop 84.8 10 0.00035 41.0 14.1 110 235-345 27-165 (454)
354 3sbq_A Nitrous-oxide reductase 84.6 54 0.0019 36.4 23.8 121 209-344 299-455 (638)
355 1zi0_A DNA gyrase subunit A; b 83.4 42 0.0014 34.1 26.1 196 152-357 49-280 (307)
356 1wp5_A Topoisomerase IV; broke 83.4 43 0.0015 34.3 25.9 231 116-356 4-279 (323)
357 3l6v_A GYRA, DNA gyrase subuni 82.1 34 0.0012 35.9 16.3 156 195-357 4-183 (370)
358 4gq2_M Nucleoporin NUP120; bet 81.4 30 0.001 41.3 17.4 40 188-227 237-276 (950)
359 1zi0_A DNA gyrase subunit A; b 81.1 50 0.0017 33.5 17.2 155 196-357 1-179 (307)
360 3mvd_K Regulator of chromosome 80.8 60 0.0021 34.2 31.6 226 116-354 83-374 (423)
361 1wp5_A Topoisomerase IV; broke 79.3 49 0.0017 33.9 16.1 154 196-356 3-176 (323)
362 1suu_A DNA gyrase subunit A; t 77.9 63 0.0022 32.8 24.4 230 116-355 7-284 (312)
363 4hvt_A Ritya.17583.B, post-pro 77.3 1.1E+02 0.0037 35.1 25.4 178 83-270 214-433 (711)
364 3das_A Putative oxidoreductase 76.1 76 0.0026 32.8 26.7 221 109-342 35-326 (347)
365 4hvt_A Ritya.17583.B, post-pro 75.3 1.2E+02 0.0041 34.7 23.7 235 65-314 131-431 (711)
366 3b7f_A Glycosyl hydrolase, BNR 74.9 82 0.0028 32.6 24.8 177 149-332 181-391 (394)
367 3kci_A Probable E3 ubiquitin-p 73.6 90 0.0031 32.4 28.1 195 108-312 107-345 (389)
368 4gq2_M Nucleoporin NUP120; bet 73.0 1.6E+02 0.0054 34.9 27.2 39 235-274 236-274 (950)
369 2wg3_C Hedgehog-interacting pr 72.5 1.1E+02 0.0038 32.9 26.7 253 111-363 19-382 (463)
370 4h1k_B Nuclear polyadenylated 67.8 3.8 0.00013 27.6 2.6 11 685-695 14-24 (38)
371 3kci_A Probable E3 ubiquitin-p 65.0 1.3E+02 0.0046 31.1 27.6 227 117-354 62-345 (389)
372 3q6k_A 43.2 kDa salivary prote 64.2 1.4E+02 0.0048 31.2 15.5 143 209-351 124-303 (381)
373 4a9v_A PHOX; hydrolase, beta-p 63.6 83 0.0028 34.9 13.9 61 187-253 476-548 (592)
374 3mvd_K Regulator of chromosome 63.4 1.5E+02 0.0051 31.0 29.5 180 116-312 135-374 (423)
375 3uc1_A DNA gyrase subunit A; D 62.3 1.4E+02 0.0048 30.4 22.9 156 104-265 94-278 (327)
376 3zwu_A Alkaline phosphatase PH 61.9 81 0.0028 35.2 13.8 59 189-253 478-548 (592)
377 3sbq_A Nitrous-oxide reductase 60.7 14 0.00049 40.9 7.1 71 188-266 324-408 (638)
378 3l6v_A GYRA, DNA gyrase subuni 60.6 1.6E+02 0.0056 30.6 28.2 235 115-356 5-318 (370)
379 1zvt_A Topoisomerase IV subuni 60.2 1E+02 0.0034 30.3 12.9 147 200-358 4-167 (256)
380 3u5c_h Suppressor protein STM1 57.4 2.2 7.5E-05 42.5 0.0 7 642-648 185-191 (273)
381 2wg3_C Hedgehog-interacting pr 54.5 1.7E+02 0.0058 31.4 14.6 110 187-300 14-156 (463)
382 4fhn_B Nucleoporin NUP120; pro 52.6 38 0.0013 41.2 9.9 40 188-227 239-278 (1139)
383 4gqb_C Histone H4 peptide; TIM 51.3 6.4 0.00022 23.1 1.3 14 682-695 2-15 (26)
384 4fhn_B Nucleoporin NUP120; pro 47.8 1.1E+02 0.0037 37.2 12.8 39 235-274 238-276 (1139)
385 3mez_B Mannose-specific lectin 44.4 1.4E+02 0.0048 25.0 10.2 61 247-312 24-84 (113)
386 1suu_A DNA gyrase subunit A; t 34.7 3.6E+02 0.012 26.9 26.3 185 72-265 6-230 (312)
387 1sqj_A OXG-RCBH, oligoxylogluc 33.9 5.8E+02 0.02 29.1 22.7 194 149-351 19-266 (789)
388 3of7_A Regulator of chromosome 33.6 4.6E+02 0.016 27.8 25.7 186 116-312 156-405 (473)
389 3a0f_A Xyloglucanase; beta-pro 33.4 5.8E+02 0.02 29.0 17.7 165 185-354 19-211 (763)
390 3of7_A Regulator of chromosome 33.4 4.6E+02 0.016 27.8 27.2 143 158-311 159-340 (473)
391 3no0_A DNA gyrase subunit A; D 32.3 3.7E+02 0.013 26.4 20.6 152 104-265 67-245 (276)
392 3a0f_A Xyloglucanase; beta-pro 32.2 4.1E+02 0.014 30.3 14.0 108 234-344 20-154 (763)
393 4fp9_B Mterf domain-containing 28.4 6 0.0002 41.1 -2.3 6 507-512 269-274 (335)
394 1a12_A RCC1, regulator of chro 27.7 5.2E+02 0.018 26.6 28.3 225 117-354 68-365 (413)
395 3f7f_A Nucleoporin NUP120; nuc 27.7 74 0.0025 36.3 6.2 38 188-227 223-260 (729)
396 4a9v_A PHOX; hydrolase, beta-p 27.7 1.8E+02 0.0061 32.3 9.1 59 281-343 478-550 (592)
397 3f7f_A Nucleoporin NUP120; nuc 26.7 65 0.0022 36.8 5.5 37 279-320 222-258 (729)
398 1zvu_A Topoisomerase IV subuni 23.3 4.6E+02 0.016 29.7 11.5 150 196-358 470-637 (716)
399 3zwu_A Alkaline phosphatase PH 21.2 1.9E+02 0.0064 32.2 7.9 60 236-299 477-548 (592)
400 2ca6_A RAN GTPase-activating p 20.3 25 0.00086 36.5 0.5 37 543-579 336-372 (386)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=321.81 Aligned_cols=281 Identities=18% Similarity=0.210 Sum_probs=244.5
Q ss_pred cccCCCceeEEEECCC----CCEEEEEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeE
Q 005325 58 DLWFETATTKIRETPD----GEFLIVSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRSI 129 (702)
Q Consensus 58 d~~~~~~v~~i~~SpD----G~~llatGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I 129 (702)
...|...|++|+|+|+ +.+ |+||+.|++|+||++.... ..+.+|... +..+.+++++..+++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~-l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~--v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSET-VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG--VVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECSSSSEEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCE-EEEEcCCCCEEEEECCCCCeeeeeeeccCCCC--EEEEEECCCCCEEEEEeCCCcE
Confidence 3469999999999986 456 9999999999999987633 245667544 6677789999999999999999
Q ss_pred EEEecCCceEEEec---CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc
Q 005325 130 SLHAKYGKHYSLRI---PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 130 ~iw~~~g~~~~~~i---~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~ 206 (702)
++|+.........+ +.....+.+.+.+..+++++.++.|.+||+.+++....+..|...|.+++|+|++.+|++|+.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99998743322222 223347889998888999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIK 285 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~ 285 (702)
||.|++||+++++.+..+..| ..+|++|+|+|+ +.+|++|+.||.|+|||++++.++. +..| ..+|.+++
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGH------AMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCC------SSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEccc------CCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 999999999999999998877 689999999999 9999999999999999999988776 5667 68999999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
|+| ++..+++++.|++|+|||+.+++++..+..|...|++++|+|++.+|++++.|+.|.+|.+|
T Consensus 256 ~sp---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCP---DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECC---CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 998 45566667789999999999999999999999999999999999999999999999999987
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.1e-36 Score=320.10 Aligned_cols=277 Identities=12% Similarity=0.122 Sum_probs=237.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|++++|+|||++ |++|+.|+.|+|||+.+... .+..|. ..+..+.++|++.+|++++.|+.|++|+....
T Consensus 53 gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred CCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 47899999999999999 89999999999999987443 344443 34777789999999999999999999998632
Q ss_pred ----eEEEecCCC---ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 138 ----HYSLRIPRM---GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 138 ----~~~~~i~~~---~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
.....+..+ ..++.+.+. ..+++++.++.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||+|
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 111122222 224555443 458999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc-CCCCeEEEEEeec
Q 005325 211 ECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM-FDSPIVDIKWHQS 289 (702)
Q Consensus 211 ~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~-~~~~I~sl~fsp~ 289 (702)
++||++++.++..+..| ...|++|+|+|+ +.+|++|+.||+|+|||++++.++....|. ...+|++++|+|
T Consensus 209 ~~wd~~~~~~~~~~~~h------~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 280 (340)
T 1got_B 209 KLWDVREGMCRQTFTGH------ESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK- 280 (340)
T ss_dssp EEEETTTCSEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EEEECCCCeeEEEEcCC------cCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-
Confidence 99999999999998887 689999999999 999999999999999999999887755542 235799999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
++..+++++.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|+.|.+|
T Consensus 281 --~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 281 --SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp --TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred --CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 45556666789999999999999999999999999999999999999999999999998
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-36 Score=331.09 Aligned_cols=279 Identities=14% Similarity=0.190 Sum_probs=246.0
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|++++|+|++.+ |++|+.|+.|+|||+.+ ....+..|.+. +..+.+++++.+|++++.|++|++|+..+.
T Consensus 106 gh~~~V~~~~~~p~~~~-l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~--V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDS--VQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp CCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCEEECCCSSC--EEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred ccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeccCCc--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 47889999999999998 99999999999999987 34467777555 677778999999999999999999998854
Q ss_pred eEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 138 HYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 138 ~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
.....+.. ...++.+.+.+..+++++.|+.|++||+.++.++..+.+|...|++++|+|++.+|++|+.|++|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 33333332 223778888777799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCC-------------------CCEEEEEeCCCeEEEEEcCCCeEEE-Eee
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNG-------------------GFLMGVGSSTGKVLIYDLRSSYPIR-VKD 274 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~-------------------g~~LasGs~DG~V~lwDlrs~~~l~-~~~ 274 (702)
++++.+...+..| ...|++++|+|+. +.+|++|+.||.|+|||++++.++. +.+
T Consensus 263 ~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 263 VATKECKAELREH------RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp TTTCCEEEEECCC------SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCceeeEecCC------CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 9999998888877 7899999999962 5689999999999999999999877 566
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
| ..+|++++|+| ++..+++++.|++|+|||+.+++++..+..|...|++++|+|++.+|++++.|+.|.+|.+
T Consensus 337 h--~~~v~~v~~~~---~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 337 H--DNWVRGVLFHS---GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp C--SSCEEEEEECS---SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred C--CCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 7 67999999998 5566777779999999999999999999999999999999999999999999999999964
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-35 Score=317.43 Aligned_cols=278 Identities=13% Similarity=0.139 Sum_probs=237.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|+|++|+||+++ ||||+.|+.|+|||..+... .+..| ...+..+.++|++..|++++.|+.|.+|+....
T Consensus 62 gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~~~~~--~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHAVTMP--CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECS--SSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred CCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceEEecC--CCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 48899999999999998 89999999999999877443 33334 334667789999999999999999999987521
Q ss_pred --------eEEEecC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC--CCEEEEEEc
Q 005325 138 --------HYSLRIP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL--HGLIACGGE 206 (702)
Q Consensus 138 --------~~~~~i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~--~~llasgs~ 206 (702)
...+..+ ....++.+.+....+++++.++.|++||+.+++.+..+.+|...|.+++|+|. +++|++|+.
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 1122212 22337777777778999999999999999999999999999999999999884 689999999
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee-ccCCCCeEEEE
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD-HMFDSPIVDIK 285 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~-h~~~~~I~sl~ 285 (702)
||+|++||+++++++..+..| ...|++++|+|+ +.+|++|+.|++|+|||+++..++.... +.....+.+++
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h------~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETH------ESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEecCC------CCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 999999999999999998877 789999999999 9999999999999999999988776443 33345789999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
|+| ++..+++++.|+.|+|||+.++..+..+.+|...|++++|+|++.+|++++.|+.|.+|
T Consensus 292 ~s~---~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 292 FSL---SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ECT---TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EeC---CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 998 44455556689999999999999999999999999999999999999999999999998
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-34 Score=303.80 Aligned_cols=278 Identities=11% Similarity=0.131 Sum_probs=230.1
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-C
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-G 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g 136 (702)
.|...|++|+|+|||++ |++|+.|+.|++||+.+... .+..|. ..+..+.+++++.+|++++.|++|++|+.. +
T Consensus 11 ~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred CCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 37889999999999999 89999999999999988443 444443 336677788899999999999999999987 3
Q ss_pred ceE-EEec-CCCccceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEE
Q 005325 137 KHY-SLRI-PRMGRDMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVEC 212 (702)
Q Consensus 137 ~~~-~~~i-~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~i 212 (702)
... .+.. .....++.+++....+++++.|+.|++||+.++ .....+.+|...|++++|+| ++.+|++|+.|++|++
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 332 2222 223348888888888999999999999999987 55677899999999999999 5689999999999999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcC--CCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeec
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDS--NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp--d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~ 289 (702)
||+++......+..+ +...|.+++|+| + +.+|++|+.||+|+|||+++++++. +..| ..+|.+++|+|
T Consensus 168 wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~p- 238 (304)
T 2ynn_A 168 WSLGQSTPNFTLTTG-----QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHP- 238 (304)
T ss_dssp EETTCSSCSEEEECC-----CTTCEEEEEECCSTT-CCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECS-
T ss_pred EECCCCCccceeccC-----CcCcEEEEEEEEcCC-CCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEECC-
Confidence 999988877776654 257899999987 5 7899999999999999999999877 5667 67999999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC--EEEEEeCCCcEEEEEc
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG--LLLLALDCSQIPSYFI 352 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~--~l~~a~~d~~I~~~~i 352 (702)
++..+++++.|++|+|||+.+++++..+..|...+.+++|+|+++ +++++.+++ +.+|.+
T Consensus 239 --~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 239 --TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp --SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred --CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 344555666899999999999999999999999999999999875 466666555 445543
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-35 Score=316.59 Aligned_cols=285 Identities=15% Similarity=0.187 Sum_probs=227.2
Q ss_pred cCCCceeEEEECCCCCEEEEEEec------CCcEEEEEcCC------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIY------PPQVKVYELRQ------LSLKFERHLDSEIINFEVLADDYSKLAFLCADR 127 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~------dg~I~vwdl~~------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~ 127 (702)
.|...|++|+|||||++ ||+|+. |+.|++|+..+ +......|... +..+.++|++ .+++++.|+
T Consensus 40 ~H~~~V~~v~fSpDG~~-las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~--V~~~~~s~d~-~~l~~s~dg 115 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGAL-LLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG--VTDVAWVSEK-GILVASDSG 115 (357)
T ss_dssp CCCSEEEEEEECSSSCE-EEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC--EEEEEEETTT-EEEEEETTS
T ss_pred cccCCEEEEEECCCCCE-EEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC--EEEEEEcCCC-CEEEEECCC
Confidence 36788999999999999 888886 77899998866 22344455443 5555667774 567789999
Q ss_pred eEEEEecCC-ceE---EEec---CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-C
Q 005325 128 SISLHAKYG-KHY---SLRI---PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-G 199 (702)
Q Consensus 128 ~I~iw~~~g-~~~---~~~i---~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~ 199 (702)
+|+||++.. ... .... .....++.+.+.+..|++++.++.|++||+.+++.+..+..|...|++++|+|++ .
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999863 211 1111 1233478888888889999999999999999999999999999999999999988 5
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCC
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFD 278 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~ 278 (702)
+|++++.||+|++||+++++++..+... .+...|++|+|+|+++.+|++|+.|+.|+|||+++++++. +..| .
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~ 269 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--S 269 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--S
T ss_pred eeeeeccCCceEEEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--c
Confidence 8999999999999999998877766544 2367899999999867889999999999999999988776 5556 6
Q ss_pred CCeEEEEEeeccCCCCCeE-EEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcCCCC
Q 005325 279 SPIVDIKWHQSINTERPKL-ITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll-~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
.+|++|+|+| ++..+| +++.|++|+|||+.+++++..+ .|...|++|+|+| ++.+|++++.|+.|.+|.+|..+
T Consensus 270 ~~v~~l~~sp---~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 270 QNITGLAYSY---HSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEEEECS---SSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred eeEEEEEEcC---CCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 7999999998 444544 5668999999999999887665 7899999999999 78899999999999999999876
Q ss_pred CC
Q 005325 357 PT 358 (702)
Q Consensus 357 ~a 358 (702)
..
T Consensus 346 ~~ 347 (357)
T 4g56_B 346 RT 347 (357)
T ss_dssp --
T ss_pred cc
Confidence 53
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=312.53 Aligned_cols=281 Identities=12% Similarity=0.112 Sum_probs=223.1
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-------------ceEEEeeecCCceEEEEEEcCCCCEEEEEECC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-------------LSLKFERHLDSEIINFEVLADDYSKLAFLCAD 126 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-------------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D 126 (702)
.++..+++++|||||++ |++++ +.++++||... .......+ ... +..+.|+++ ..|++++.|
T Consensus 28 ~~~~~v~~~~fs~dG~~-l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~s~d-~~l~~~s~d 102 (344)
T 4gqb_B 28 CMERQLEAARYRSDGAL-LLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT-EAG-VADLTWVGE-RGILVASDS 102 (344)
T ss_dssp SCCSEEEEEEECTTSCE-EEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE-SSC-EEEEEEETT-TEEEEEETT
T ss_pred cccCCEEEEEECCCCCE-EEEEe-CCceEEeeceeeeeccccccCCcceeeeeecc-CCC-EEEEEEeCC-CeEEEEECC
Confidence 35677999999999998 66666 67777776321 11112222 233 455556777 688999999
Q ss_pred CeEEEEecC-Cce-EEEe--c---CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-
Q 005325 127 RSISLHAKY-GKH-YSLR--I---PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH- 198 (702)
Q Consensus 127 ~~I~iw~~~-g~~-~~~~--i---~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~- 198 (702)
++|+||++. +.. .... . .....+++|.+.+..|++++.++.|++||+.+++.+..+.+|...|++++|+|++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 999999987 322 2221 1 2233488888888889999999999999999999999999999999999999998
Q ss_pred CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccC
Q 005325 199 GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMF 277 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~ 277 (702)
.+|++|+.|++|++||+++++++..+..+ .+...+++++|+|+++.+|++|+.||.|+|||+++++++. +..|
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h-- 256 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH-- 256 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC--
T ss_pred Cceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC--
Confidence 68999999999999999999988887654 2356799999999757899999999999999999998876 6677
Q ss_pred CCCeEEEEEeeccCCCCC-eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC-EEEEEeCCCcEEEEEcCCC
Q 005325 278 DSPIVDIKWHQSINTERP-KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG-LLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~-ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~-~l~~a~~d~~I~~~~ip~l 355 (702)
..+|++|+|+| ++.. +++++.|++|+|||+.+++++ .+.+|...|++|+|+|++. +|++++.|+.|.+|.+|.-
T Consensus 257 ~~~v~~v~fsp---~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 257 SQCVTGLVFSP---HSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSCEEEEEECS---SSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 68999999998 4444 455668999999999998765 5789999999999999876 6778999999999999863
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-34 Score=313.05 Aligned_cols=282 Identities=14% Similarity=0.179 Sum_probs=232.9
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|++++|+|+|++ |+||+.|++|+|||+.+.. ..+..|... +..+.++|++.+|++++.|+.|++|++...
T Consensus 64 gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~--v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPW--VMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp CCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEEEECCCTT--CCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred ccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceEEecCCCC--EEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 48899999999999999 8999999999999998743 345555433 566678999999999999999999987531
Q ss_pred eE------EEe-cC---CCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEe-----ecCCCCeEEEEEcC-CCCE
Q 005325 138 HY------SLR-IP---RMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSL-----NTQSPALNVVSRSK-LHGL 200 (702)
Q Consensus 138 ~~------~~~-i~---~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l-----~~h~~~V~~l~~sp-~~~l 200 (702)
.. ... +. ....++.+.+.... +++++.|+.|.+||+.+++.+..+ .+|...|.+++|+| ++++
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 10 001 11 12225666665444 899999999999999999998877 67889999999987 7799
Q ss_pred EEEEEcCCeEEEEECC-CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee-cc--
Q 005325 201 IACGGEDGAVECFDMR-MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD-HM-- 276 (702)
Q Consensus 201 lasgs~DG~V~iWD~~-t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~-h~-- 276 (702)
|++|+.||+|++||++ ....+..+..| ...|++|+|+|+ +.+|++|+.||+|+|||++++.++.... +.
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h------~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGH------EGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCC------SSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCc------CCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 9999999999999998 45677788777 789999999999 9999999999999999999999877432 21
Q ss_pred ---CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe----cCCCCceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 277 ---FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI----EPTAGKINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 277 ---~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i----~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
....|++++|+| ++..+++++.|+.|+|||+.+++.+..+ .+|...|++++|+|++.+|++++.|+.|.+
T Consensus 294 ~~~~~~~v~~~~~s~---~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 294 NDNELPIVTSVAFSI---SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp SCCSSCSCSEEEECS---SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred cccccCceEEEEECC---CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 112489999998 4555555668999999999999988877 679999999999999999999999999999
Q ss_pred EEcCC
Q 005325 350 YFIPD 354 (702)
Q Consensus 350 ~~ip~ 354 (702)
|.+..
T Consensus 371 W~~~~ 375 (380)
T 3iz6_a 371 WAFSG 375 (380)
T ss_dssp EECCS
T ss_pred EecCC
Confidence 98754
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-33 Score=325.67 Aligned_cols=317 Identities=13% Similarity=0.132 Sum_probs=256.3
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||||.. |....++.|.||++..+ ..+ ..+ ..|...|++++|||||++ ||+|
T Consensus 26 ~spdg~~--l~~~~~~~v~l~~~~~~-~~~----------------------~~~--~~h~~~v~~~~~spdg~~-lasg 77 (611)
T 1nr0_A 26 NTPAGDK--IQYCNGTSVYTVPVGSL-TDT----------------------EIY--TEHSHQTTVAKTSPSGYY-CASG 77 (611)
T ss_dssp ECTTSSE--EEEEETTEEEEEETTCS-SCC----------------------EEE--CCCSSCEEEEEECTTSSE-EEEE
T ss_pred eCCCCCE--EEeCCCCEEEEecCCCc-ccC----------------------eEe--cCCCCceEEEEECCCCcE-EEEE
Confidence 3789883 55556789999999766 211 011 147788999999999999 9999
Q ss_pred ecCCcEEEEEcCC--c--eEEEeeecCCceEEEEEEcCCCCEEEEEECC----CeEEEEecCCceEEEecC-CCccceEE
Q 005325 82 IYPPQVKVYELRQ--L--SLKFERHLDSEIINFEVLADDYSKLAFLCAD----RSISLHAKYGKHYSLRIP-RMGRDMAY 152 (702)
Q Consensus 82 s~dg~I~vwdl~~--~--~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D----~~I~iw~~~g~~~~~~i~-~~~~~l~~ 152 (702)
+.|+.|+|||+.+ . ...+..|... +..+.|+|++..|++++.+ +.|.+|+.......+..+ ....++.|
T Consensus 78 ~~d~~v~lWd~~~~~~~~~~~~~~~~~~--v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 78 DVHGNVRIWDTTQTTHILKTTIPVFSGP--VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp ETTSEEEEEESSSTTCCEEEEEECSSSC--EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred eCCCCEEEeECCCCcceeeEeecccCCc--eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEE
Confidence 9999999999864 2 2345556443 7777899999999999875 478899865332222211 12337888
Q ss_pred ecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEec-ccCC
Q 005325 153 NSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINA-VAPA 230 (702)
Q Consensus 153 ~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~-~~~~ 230 (702)
.|.... +++++.|+.|++||..+++++..+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+.. ....
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 887764 88999999999999999999999999999999999999999999999999999999999988887742 1111
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec--cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 231 GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH--MFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 231 ~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h--~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
..|...|++|+|+|+ |.+|++|+.|++|+|||+++++++..... .....+..+.|. +..+++++.|+.|++|
T Consensus 236 ~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-----KQALVSISANGFINFV 309 (611)
T ss_dssp CSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC-----SSCEEEEETTCCEEEE
T ss_pred cccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc-----CCEEEEEeCCCcEEEE
Confidence 135789999999999 99999999999999999999988764322 113356677774 6678888899999999
Q ss_pred eCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 309 DPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 309 d~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
|..++.++..+.+|...|++++|+|++.+|++++.|+.|.+|.+..
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 9999998889999999999999999999999999999999999865
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.5e-33 Score=291.61 Aligned_cols=282 Identities=13% Similarity=0.167 Sum_probs=235.0
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.|...|++++|+|+|++ |++|+.|+.|++|++.+.. ..+..|... +..+.+++++.+|++++.|+.|++|+....
T Consensus 21 gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccchhhccCCCc--eEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 57889999999999999 8999999999999997733 345556443 667778999999999999999999998843
Q ss_pred eEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 138 HYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 138 ~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
.....+.. ...++.+.+....+++++.++.|++||+.+++.+..+..|...|++++|+|++.+|++|+.||.|++||
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 32222222 233777888877899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
+++++.+..+... +...|++++|+|+ +.+|++++.||.|++||+++++++. +..|..........|++ .++
T Consensus 178 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (312)
T 4ery_A 178 TASGQCLKTLIDD-----DNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV--TGG 249 (312)
T ss_dssp TTTCCEEEEECCS-----SCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC--SSS
T ss_pred CCCCceeeEEecc-----CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe--CCC
Confidence 9999888776544 2578999999999 9999999999999999999998876 45563222233345554 133
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEe--CCCcEEEEEc
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLAL--DCSQIPSYFI 352 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~--~d~~I~~~~i 352 (702)
..+++++.|+.|+|||+.+++.+..+.+|...|.+++|+|++.++++++ .|+.|.+|..
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4455556899999999999999999999999999999999999999987 6899999974
No 11
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=304.36 Aligned_cols=318 Identities=12% Similarity=0.106 Sum_probs=255.0
Q ss_pred ccCCCcceEEEEecCCcEEEEc----ccCCCCCccccchHhhhhhccCcccccceeeeecc-------cCCCceeEEEEC
Q 005325 3 SRGGEGNAMKSTLINGVKMYSL----VSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-------WFETATTKIRET 71 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~v----s~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-------~~~~~v~~i~~S 71 (702)
+|||..+++.++.++.|+||++ ..+ ..+ |-.. ....+...+ .+...|++++|+
T Consensus 54 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 54 NPLDESILAYGEKNSVARLARIVETDQEG-KKY--WKLT-------------IIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp CSSCTTEEEEEETBTEEEEEEEEEC-------C--EEEE-------------EEEEEECCCCCC------CBCEEEEEEC
T ss_pred CCCCCcEEEEecCCceEEEEEEecccCCc-ccc--cccc-------------ccccccccccccccccCCCCceEEEEEc
Confidence 6788745677888899999999 776 321 1100 001111111 246689999999
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE--EecCCC--
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS--LRIPRM-- 146 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~~~-- 146 (702)
|+|++ |++|+.++.|++|+..... ..+..|... +..+.+++++..|++++.|+.|.+|+....... +..+..
T Consensus 118 ~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 118 HDGNS-IVTGVENGELRLWNKTGALLNVLNFHRAP--IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp TTSSE-EEEEETTSCEEEEETTSCEEEEECCCCSC--EEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCCCE-EEEEeCCCeEEEEeCCCCeeeeccCCCcc--EEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 99999 8999999999999955533 344455333 666778899999999999999999998743222 222222
Q ss_pred --------------ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 147 --------------GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 147 --------------~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~i 212 (702)
..++.+.+. ..+++++.++.|++||+.+++.+..+..|...|++++|+|++.+|++++.||.|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 446777664 45889999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccC
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSIN 291 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~ 291 (702)
||+++++.+..+..+ ...|++++|+|+ + +|++++.||.|++||+++++++. +..| ..+|.+++|+|
T Consensus 274 ~d~~~~~~~~~~~~~------~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~--- 340 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGH------SQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQ--- 340 (425)
T ss_dssp ECSSSBSCSEEECCC------SSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECT---
T ss_pred EECCCCccceEecCC------CccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcC---
Confidence 999999999888776 689999999999 7 99999999999999999998877 4555 67999999998
Q ss_pred CCCCeEEEeCCCEEEEEeCCCCc--------------------eeEEecCCCC--ceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 292 TERPKLITTDNHIVRIWDPETGE--------------------SMTSIEPTAG--KINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~tg~--------------------~l~~i~~h~~--~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
++..+++++.|+.|+|||+.++. ++..+..|.. .|++++|+|++.+|++++.++.|.+
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 45556666689999999999888 8999999876 9999999999999999999999999
Q ss_pred EEcC
Q 005325 350 YFIP 353 (702)
Q Consensus 350 ~~ip 353 (702)
|.++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9876
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-33 Score=315.23 Aligned_cols=303 Identities=16% Similarity=0.218 Sum_probs=252.3
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++||.. ++.++.++.|++|+.++. . +..+ ..|...|++++|+|++++ |++++
T Consensus 271 ~~d~~~-l~~~~~d~~i~~w~~~~~--~----------------------~~~~--~~h~~~v~~~~~~~~~~~-l~t~~ 322 (577)
T 2ymu_A 271 RPDGQT-IASASDDKTVKLWNRNGQ--L----------------------LQTL--TGHSSSVWGVAFSPDGQT-IASAS 322 (577)
T ss_dssp CTTSSE-EEEEETTSCEEEEETTSC--E----------------------EEEE--CCCSSCEEEEEECTTSSE-EEEEE
T ss_pred cCCCCE-EEEEeCCCEEEEEeCCCc--E----------------------EEEE--ecCCCCeEEEEECCCCCE-EEEEe
Confidence 567764 466777888999987543 0 0111 136788999999999999 89999
Q ss_pred cCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC--CCccceEEecCCCcE
Q 005325 83 YPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP--RMGRDMAYNSWSCDL 159 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~--~~~~~l~~~~~s~~l 159 (702)
.|+.|++||+....+ .+..|... +..+.++|++..|++++.|+.|++|+..+........ ....++++.+.+..+
T Consensus 323 ~d~~i~~w~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp TTSCEEEEETTSCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CCCeEEEEeCCCCeeEEEeCCCCC--EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 999999999887444 44555333 6667789999999999999999999987655443222 223478888888889
Q ss_pred EEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
++++.++.|++||. +++.+..+..|...|++++|+|++.+|++++.|++|++||. +++.+..+..| ...|++
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~------~~~v~~ 472 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH------SSSVRG 472 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC------SSCEEE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC------CCCEEE
Confidence 99999999999995 67888999999999999999999999999999999999996 56777788777 789999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEE
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTS 318 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~ 318 (702)
++|+|+ +.+|++++.|+.|+|||. +++++. +..| ..+|++|+|+| ++..+++++.|+.|+|||. +++++..
T Consensus 473 ~~~spd-~~~las~~~d~~i~iw~~-~~~~~~~~~~h--~~~v~~l~~s~---dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 473 VAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp EEECTT-SCEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECT---TSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred EEEcCC-CCEEEEEeCCCEEEEEcC-CCCEEEEEeCC--CCCEEEEEEcC---CCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 999999 999999999999999996 455554 6777 68999999998 5566667778999999996 6889999
Q ss_pred ecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 319 IEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 319 i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+.+|...|++++|+|++.+|++++.|+.|.+|.
T Consensus 545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999983
No 13
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.5e-33 Score=291.87 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=239.1
Q ss_pred ceeeeecc-cCCCceeEEEECCCC-CEEEEEEecCCcEEEEEcCCc-------eEEEeeecCCceEEEEEEcCCCCEEEE
Q 005325 52 RVELIQDL-WFETATTKIRETPDG-EFLIVSGIYPPQVKVYELRQL-------SLKFERHLDSEIINFEVLADDYSKLAF 122 (702)
Q Consensus 52 rieliqd~-~~~~~v~~i~~SpDG-~~llatGs~dg~I~vwdl~~~-------~~~~~~h~~~~vv~~~~ls~dg~~Las 122 (702)
.+.|...| .|...|++|+|+|++ ++ ||||+.|++|+|||+... ...+..|... +..+.+++++.+|++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~-l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~--V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDM-ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF--VSDVVISSDGQFALS 103 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTE-EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC--EEEEEECTTSSEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCE-EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC--EEEEEECCCCCEEEE
Confidence 33444444 489999999999985 56 999999999999998762 2245556444 777788999999999
Q ss_pred EECCCeEEEEecCCceEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeE-EEEeecCCCCeEEEEEcCCC
Q 005325 123 LCADRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRF-LSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 123 ~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~-~~~l~~h~~~V~~l~~sp~~ 198 (702)
++.|+.|.+|+............ ....+.+.+....+++++.++.+.+||+..... ...+..|...|.+++|+++.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999885443332222 222556666667799999999999999987654 34456788999999998875
Q ss_pred --CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc
Q 005325 199 --GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 199 --~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~ 276 (702)
.++++++.|++|++||+++++.+..+..| ...|++|+|+|+ +.+|++|+.||.|+|||+++.+++....+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h------~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~- 255 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH------TGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDG- 255 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEEC-
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCC------CCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceeeeecC-
Confidence 68899999999999999999999888877 789999999999 99999999999999999999998886665
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec---------CCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE---------PTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~---------~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
..+|.+++|+| ++.+++++.|+.|+|||+.++..+..+. .|...|++++|+|++.+|++++.|+.|
T Consensus 256 -~~~v~~~~~~~----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 256 -GDIINALCFSP----NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp -SSCEEEEEECS----SSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred -CceEEeeecCC----CCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 46899999998 7789999999999999999887766654 578899999999999999999999999
Q ss_pred EEEEcCC
Q 005325 348 PSYFIPD 354 (702)
Q Consensus 348 ~~~~ip~ 354 (702)
++|.+..
T Consensus 331 ~iW~~~t 337 (340)
T 4aow_A 331 RVWQVTI 337 (340)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 9998753
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=299.92 Aligned_cols=292 Identities=15% Similarity=0.158 Sum_probs=231.4
Q ss_pred ceeeeecc-cCCC-ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE----EE-eeecCCceEEEEEEcCCCCEEEEEE
Q 005325 52 RVELIQDL-WFET-ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL----KF-ERHLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 52 rieliqd~-~~~~-~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~----~~-~~h~~~~vv~~~~ls~dg~~Las~s 124 (702)
.+++++.+ .|+. .|.+++|+|||++ ||+|+.|+.|+||++..... .+ ..|... +..+.++|++.+|++++
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~-las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT--VRKVAWSPCGNYLASAS 80 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSC-EEEEETTSCEEEEEEETTEEEEEEEECSSCSSC--EEEEEECTTSSEEEEEE
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCE-EEEEcCCCeEEEEEcCCCcceeeeeeccccCCc--EEEEEECCCCCEEEEEE
Confidence 34566666 3666 8999999999999 89999999999999987432 12 345433 77778899999999999
Q ss_pred CCCeEEEEecCCce--EEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCC---eEEEEeecCCCCeEEEEEcC
Q 005325 125 ADRSISLHAKYGKH--YSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQG---RFLSSLNTQSPALNVVSRSK 196 (702)
Q Consensus 125 ~D~~I~iw~~~g~~--~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g---~~~~~l~~h~~~V~~l~~sp 196 (702)
.|++|++|+..... ....+.. ...++.+.+.+..|++++.|+.|++||+.++ .++..+..|...|++++|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999999887432 1222222 2337888888878999999999999999876 45667889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-------
Q 005325 197 LHGLIACGGEDGAVECFDMRMRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS------- 267 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~------- 267 (702)
++.+|++|+.|++|++||++++. ++..+..| ...|++|+|+|+ |.+|++|+.||+|+|||+...
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h------~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGH------ESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC------CCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccce
Confidence 99999999999999999998775 34556655 789999999999 999999999999999997431
Q ss_pred --------eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc----e-----eEEecCCCCceeEEE
Q 005325 268 --------YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE----S-----MTSIEPTAGKINDVC 330 (702)
Q Consensus 268 --------~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~----~-----l~~i~~h~~~I~~v~ 330 (702)
.++......+...|.+++|+| ++..+++++.|+.|+||+...+. + .....+|...|++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQ---LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECT---TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEec---CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 122222111367899999998 56677778899999999987542 1 123367899999999
Q ss_pred EEcCC-CEEEEEeCCCcEEEEEcCCCC
Q 005325 331 VFKDS-GLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 331 ~~p~~-~~l~~a~~d~~I~~~~ip~lg 356 (702)
|+|++ .+|++++.|+.|.+|.+....
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99987 599999999999999987643
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-33 Score=303.95 Aligned_cols=294 Identities=17% Similarity=0.209 Sum_probs=235.9
Q ss_pred eeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecC----------------CceEEEEEEc
Q 005325 53 VELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLD----------------SEIINFEVLA 114 (702)
Q Consensus 53 ieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~----------------~~vv~~~~ls 114 (702)
+++++.+.|...|+|++|||||++ ||+|+ ++.++||++.+... .+..+.. ...+..+.++
T Consensus 55 ~~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 55 VELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred ceeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 456677789999999999999999 78876 68999999987433 2322211 1126677889
Q ss_pred CCCCEEEEEECCCeEEEEecCCceEEEecCCC---ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEE
Q 005325 115 DDYSKLAFLCADRSISLHAKYGKHYSLRIPRM---GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNV 191 (702)
Q Consensus 115 ~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~---~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~ 191 (702)
+++.+|++++.|++|++|+.........+..+ ..++.+.+.+..+++++.++.|++||+.+++....+. +...|.+
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~ 211 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTT 211 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEE
Confidence 99999999999999999999854433333322 2378888888889999999999999999999888776 4457999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccC-CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-
Q 005325 192 VSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAP-AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY- 268 (702)
Q Consensus 192 l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~-~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~- 268 (702)
++|+| ++.+|++|+.||+|++||++++..+..+..... ...|...|++|+|+|+ +.+|++|+.||.|+|||+++..
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC-----
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCC
Confidence 99999 889999999999999999999988877743211 1245789999999999 9999999999999999998632
Q ss_pred -----------EE-EEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc---
Q 005325 269 -----------PI-RVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK--- 333 (702)
Q Consensus 269 -----------~l-~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p--- 333 (702)
+. .+.+| ...|.+++|+| ++..+++++.|+.|+|||+.+++++..+.+|...|.+++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~---~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~ 365 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGH--KDFVLSVATTQ---NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 365 (393)
T ss_dssp ----------CEEEEEECC--SSCEEEEEECG---GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred cccccCCCCCcceEEEecc--cCcEEEEEECC---CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcC
Confidence 22 24556 67899999998 455566677899999999999999999999999999999986
Q ss_pred ---CCCEEEEEeCCCcEEEEEcCCC
Q 005325 334 ---DSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 334 ---~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++.+|++++.|+.|.+|.+...
T Consensus 366 ~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 366 LGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCCCCEEEEECCCCcEEECccccc
Confidence 5779999999999999987654
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.6e-33 Score=293.50 Aligned_cols=285 Identities=12% Similarity=0.134 Sum_probs=237.5
Q ss_pred eeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc-------eEEEeeecCCceEEEEEEcCCCCEEEEEEC
Q 005325 54 ELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL-------SLKFERHLDSEIINFEVLADDYSKLAFLCA 125 (702)
Q Consensus 54 eliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~-------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~ 125 (702)
.+...| .|...|++++|+|++..+|++|+.|++|++|++... ...+..|... +..+.+++++.+|++++.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC--EEEEEECTTSSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCccc--EEEEEECCCCCEEEEEeC
Confidence 444445 488999999999987444999999999999998641 2345667544 777889999999999999
Q ss_pred CCeEEEEecCCceEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC----
Q 005325 126 DRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH---- 198 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~---- 198 (702)
|++|++|++........+.. ...++.+.+....+++++.|+.|.+||+. +..+..+.+|...|.+++|+|..
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999999874332222222 23377788877779999999999999996 56778888999999999999854
Q ss_pred --CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc
Q 005325 199 --GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 199 --~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~ 276 (702)
.+|++|+.|++|++||+++.+....+..| ...|++++|+|+ +.+|++|+.||.|+|||+++++++....+
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h------~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 236 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGH------NSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTLSA- 236 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCC------CSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEEC-
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCC------CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecC-
Confidence 48999999999999999998888888777 789999999999 99999999999999999999998876555
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC--------CCCceeEEEEEcCCCEEEEEeCCCcEE
Q 005325 277 FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP--------TAGKINDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~--------h~~~I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
..+|.+++|+| ++.+++++.+..|+||++..+..+..+.+ |...|.+++|+|++.+|++++.|+.|+
T Consensus 237 -~~~v~~~~~sp----~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 237 -QDEVFSLAFSP----NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp -CSCEEEEEECS----SSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -CCcEEEEEEcC----CCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 46899999998 67788877777899999998877777654 345789999999999999999999999
Q ss_pred EEEcCC
Q 005325 349 SYFIPD 354 (702)
Q Consensus 349 ~~~ip~ 354 (702)
+|.+..
T Consensus 312 vWd~~t 317 (319)
T 3frx_A 312 VWQVMT 317 (319)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 998753
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=289.77 Aligned_cols=283 Identities=13% Similarity=0.155 Sum_probs=238.7
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce-----EEEeeecCCceEEEEEEcCCCCEEEEEECCCe
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS-----LKFERHLDSEIINFEVLADDYSKLAFLCADRS 128 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~-----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~ 128 (702)
..+..+.|+..|++++|+|++++ |++++ ++.|++|++.... ..+........+..+.+++++..|++++.|+.
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~-l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred ccceeccCCCceEEEEEecCCcE-EEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 44556689999999999999999 77777 9999999997621 22221112334777778899999999999999
Q ss_pred EEEEecCCce--EEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEE
Q 005325 129 ISLHAKYGKH--YSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIAC 203 (702)
Q Consensus 129 I~iw~~~g~~--~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llas 203 (702)
|.+|+..... ....+.. ...++.+.+....+++++.++.|++||+.+++.+..+..|...|++++|+|++.+|++
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999988433 2222222 2237788887777999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEE
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVD 283 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~s 283 (702)
++.||.|++||+++++.+..+... ..|++++|+|+ +.+|++++.+|.|++||+++.....+..| ..+|.+
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~~~-------~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~v~~ 270 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHDFT-------SQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLHLH--ESCVLS 270 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEECS-------SCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEEEECCC--SSCEEE
T ss_pred EecCCcEEEEECCCCceEeeecCC-------CceEEEEECCC-CCEEEEEcCCCcEEEEECCCCCeEEEcCC--ccceeE
Confidence 999999999999999888887654 78999999999 99999999999999999999888777777 689999
Q ss_pred EEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 284 IKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++|+| ++..+++++.|+.|++||+.+++.+.... |...|++++|+|++.+|++++.++.|.+|.+
T Consensus 271 ~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 271 LKFAY---CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECC---CCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99998 45556666789999999999998885544 5889999999999999999999999999975
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.4e-33 Score=319.77 Aligned_cols=317 Identities=15% Similarity=0.099 Sum_probs=246.2
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
+|||...+++++.++.|+||++..+ + ++..+ .|...|++++|+|||++ ||+|
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~-~-------------------------~~~~l~~H~~~V~~v~fspdg~~-las~ 208 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPF-K-------------------------FKSTFGEHTKFVHSVRYNPDGSL-FAST 208 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTB-E-------------------------EEEEECCCSSCEEEEEECTTSSE-EEEE
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCC-e-------------------------EeeeeccccCceEEEEECCCCCE-EEEE
Confidence 5777655788899999999997655 1 11122 47889999999999998 8999
Q ss_pred ecCCcEEEEEcCCceE--EEe-------eecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEE-EecCCCc--c
Q 005325 82 IYPPQVKVYELRQLSL--KFE-------RHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYS-LRIPRMG--R 148 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~--~~~-------~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~-~~i~~~~--~ 148 (702)
+.|+.|++||+.+... .+. .|... +..+.++|++.+|++++.|++|++|++.. .... +...... .
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~--V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS--VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCC--EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 9999999999877433 332 45433 67777899999999999999999999874 3222 2222111 1
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEe-cc
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARIN-AV 227 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~-~~ 227 (702)
.+........+++++.++.|.+||+.++.....+.+|...|++++|+|++.+|++|+.|++|++||+.++.....+. .|
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 22223345568999999999999999999988999999999999999999999999999999999998765432210 00
Q ss_pred cC----------------------------------------------------C-----------------------CC
Q 005325 228 AP----------------------------------------------------A-----------------------GD 232 (702)
Q Consensus 228 ~~----------------------------------------------------~-----------------------~~ 232 (702)
.. . ..
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 00 0 01
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE--EEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI--RVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l--~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
+...+++++|+|+ |.+||+|+.|++|+|||+.++... ....| ..+|++|+|+| ++..+++++.|++|++|++
T Consensus 447 ~~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~~~~~~~~h--~~~v~~v~fsp---dg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 447 ISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEVKTIVH--PAEITSVAFSN---NGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp CSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEEEEEEC--SSCEEEEEECT---TSSEEEEEETTSCEEEEEG
T ss_pred cCCCceEEEEeCC-CCEEEEeCCCCeEEEEEccCCceeeeeccCC--CCceEEEEECC---CCCEEEEEcCCCCEEEEEc
Confidence 2346789999999 999999999999999999887543 34556 78999999998 4555556668999999999
Q ss_pred CC-CceeEE--ecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 311 ET-GESMTS--IEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 311 ~t-g~~l~~--i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+ ++++.. +..|...|++++|+|++.+|++++.|+.|.+|.+..
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 87 666543 344999999999999999999999999999999864
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.7e-32 Score=308.36 Aligned_cols=306 Identities=15% Similarity=0.207 Sum_probs=251.8
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++||.. ++.++.++.|+||+.++. . +..+ ..+...|++++|+|||++ |++++
T Consensus 230 s~dg~~-l~~~~~d~~i~~w~~~~~--~----------------------~~~~--~~~~~~v~~v~~~~d~~~-l~~~~ 281 (577)
T 2ymu_A 230 SPDGQT-IASASDDKTVKLWNRNGQ--L----------------------LQTL--TGHSSSVNGVAFRPDGQT-IASAS 281 (577)
T ss_dssp CTTSSC-EEEEETTSCEEEECTTSC--E----------------------EEEE--CCCSSCEEEEEECTTSSE-EEEEE
T ss_pred CCCCCE-EEEEeCCCEEEEEeCCCC--E----------------------EEEE--ecCCCCEEEEEEcCCCCE-EEEEe
Confidence 567764 466777888999986432 1 0111 136788999999999999 89999
Q ss_pred cCCcEEEEEcCCce-EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC--CccceEEecCCCcE
Q 005325 83 YPPQVKVYELRQLS-LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR--MGRDMAYNSWSCDL 159 (702)
Q Consensus 83 ~dg~I~vwdl~~~~-~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~--~~~~l~~~~~s~~l 159 (702)
.++.|++|+..... ..+..|... +..+.++|++..|++++.|++|++|+..+......... ...++++.+....+
T Consensus 282 ~d~~i~~w~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 282 DDKTVKLWNRNGQLLQTLTGHSSS--VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp TTSCEEEEETTSCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEE
Confidence 99999999987643 345556433 66677899999999999999999999886554432222 22377888887789
Q ss_pred EEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 160 LCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 160 lv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
++++.++.|.+||. +++.+..+..|...|++++|+|++.+|++|+.|+.|++||. +++.+..+..| ...|++
T Consensus 360 ~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~------~~~v~~ 431 (577)
T 2ymu_A 360 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH------SSSVWG 431 (577)
T ss_dssp EEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC------SSCEEE
T ss_pred EEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC------CCCeEE
Confidence 99999999999995 67888899999999999999999999999999999999995 56777888777 789999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe
Q 005325 240 LEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 240 lafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i 319 (702)
++|+|+ +.+|++++.|+.|++||+.......+..| ..+|++++|+| ++..+++++.|+.|+|||. +++++..+
T Consensus 432 ~~~s~d-~~~l~~~~~d~~v~~w~~~~~~~~~~~~~--~~~v~~~~~sp---d~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 432 VAFSPD-DQTIASASDDKTVKLWNRNGQLLQTLTGH--SSSVRGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp EEECTT-SSEEEEEETTSEEEEEETTSCEEEEEECC--SSCEEEEEECT---TSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EEECCC-CCEEEEEcCCCEEEEEECCCCEEEEEcCC--CCCEEEEEEcC---CCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 999999 99999999999999999754444446777 68999999998 4455556668999999995 68899999
Q ss_pred cCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 320 EPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 320 ~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
.+|...|++++|+|++.+|++++.|+.|.+|..+
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999999999999999999999999999753
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-32 Score=291.40 Aligned_cols=283 Identities=18% Similarity=0.176 Sum_probs=227.5
Q ss_pred eeeeecc-cCCCceeEEEE-----CC-CCCEEEEEEecCCcEEEEEcCCc---------eEEEeeecCCceEEEEEEcCC
Q 005325 53 VELIQDL-WFETATTKIRE-----TP-DGEFLIVSGIYPPQVKVYELRQL---------SLKFERHLDSEIINFEVLADD 116 (702)
Q Consensus 53 ieliqd~-~~~~~v~~i~~-----Sp-DG~~llatGs~dg~I~vwdl~~~---------~~~~~~h~~~~vv~~~~ls~d 116 (702)
+.+++.+ .|...|++++| ++ |+++ |+||+.|++|+|||+... ...+..|... +..+.++++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~-l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~--V~~~~~~~~ 87 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPV-LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF--VSDLALSQE 87 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCE-EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC--EEEEEECSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCE-EEEEcCCCEEEEEECCcCCcccccccccchhccCCCc--eEEEEECCC
Confidence 3444444 48899999999 77 8888 999999999999998742 1245566444 677778999
Q ss_pred CCEEEEEECCCeEEEEecC-CceEE-Eec-CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee---cCCCCeE
Q 005325 117 YSKLAFLCADRSISLHAKY-GKHYS-LRI-PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN---TQSPALN 190 (702)
Q Consensus 117 g~~Las~s~D~~I~iw~~~-g~~~~-~~i-~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~---~h~~~V~ 190 (702)
+.+|++++.|++|++|+.. +.... +.. .....++.+.+.+..+++++.++.|++||+.... ...+. .|...|.
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVS 166 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceee
Confidence 9999999999999999987 33322 221 2233478888888889999999999999998443 33333 6888999
Q ss_pred EEEEcCCC----------CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 191 VVSRSKLH----------GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 191 ~l~~sp~~----------~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
+++|+|++ .+|++|+.||+|++||. .......+..| ...|++++|+|+ |.+|++|+.||.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h------~~~v~~~~~s~~-g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH------ESNVNHLSISPN-GKYIATGGKDKKLL 238 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC------SSCEEEEEECTT-SSEEEEEETTCEEE
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc------cccceEEEECCC-CCEEEEEcCCCeEE
Confidence 99999987 79999999999999994 45666677766 689999999999 99999999999999
Q ss_pred EEEcCC-CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeE--Eec-----------CCCCce
Q 005325 261 IYDLRS-SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMT--SIE-----------PTAGKI 326 (702)
Q Consensus 261 lwDlrs-~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~--~i~-----------~h~~~I 326 (702)
|||++. ..+.....+ +.+|.+++|+| ++.+++++.|+.|+|||+.+++... .+. +|...|
T Consensus 239 iwd~~~~~~~~~~~~~--~~~v~~v~~sp----~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 239 IWDILNLTYPQREFDA--GSTINQIAFNP----KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp EEESSCCSSCSEEEEC--SSCEEEEEECS----SSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred EEECCCCcccceeecC--CCcEEEEEECC----CCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 999954 444444444 46799999998 6678888888899999998876543 444 577889
Q ss_pred eEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 327 NDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 327 ~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
++++|+|++.+|++++.|+.|.+|.+.
T Consensus 313 ~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 313 TSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCCeEEEecCCceEEEEEEE
Confidence 999999999999999999999999764
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=310.32 Aligned_cols=314 Identities=12% Similarity=0.075 Sum_probs=248.7
Q ss_pred CccCCCcceEEE----------EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEEC
Q 005325 2 ASRGGEGNAMKS----------TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRET 71 (702)
Q Consensus 2 ~s~dg~~~~l~~----------s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~S 71 (702)
.||||..+++.. +.++.|+||++..+ ... ..+..+.++..|++++|+
T Consensus 20 ~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~-~~~----------------------~~~~~~~~~~~v~~~~~s 76 (416)
T 2pm9_A 20 WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DSE----------------------KPIASLQVDSKFNDLDWS 76 (416)
T ss_dssp BCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG-GGC----------------------SCSCCCCCSSCEEEEEEC
T ss_pred eCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC-CCC----------------------cEEEEEecCCceEEEEEC
Confidence 368887655666 67888999999887 211 223445678899999999
Q ss_pred CCCCEEEEEEecCCcEEEEEcCC------ceEEEeeecCCceEEEEEEcCC-CCEEEEEECCCeEEEEecCCce------
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQ------LSLKFERHLDSEIINFEVLADD-YSKLAFLCADRSISLHAKYGKH------ 138 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~------~~~~~~~h~~~~vv~~~~ls~d-g~~Las~s~D~~I~iw~~~g~~------ 138 (702)
|++++ |++|+.|+.|++|++.. ....+..|. .. +..+.++++ +.+|++++.|+.|.+|+.....
T Consensus 77 ~~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-~~-v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 77 HNNKI-IAGALDNGSLELYSTNEANNAINSMARFSNHS-SS-VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp SSSSC-EEEEESSSCEEEECCSSTTSCCCEEEECCCSS-SC-CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCe-EEEEccCCeEEEeecccccccccchhhccCCc-cc-eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 99999 89999999999999987 223445553 33 555556776 8999999999999999987432
Q ss_pred EEEec------CCCccceEEecC-CCcEEEEecCCCEEEEECCCCeEEEEeecC------CCCeEEEEEcCCC-CEEEEE
Q 005325 139 YSLRI------PRMGRDMAYNSW-SCDLLCAASSPELYRINLEQGRFLSSLNTQ------SPALNVVSRSKLH-GLIACG 204 (702)
Q Consensus 139 ~~~~i------~~~~~~l~~~~~-s~~llv~s~d~~V~vwdl~~g~~~~~l~~h------~~~V~~l~~sp~~-~llasg 204 (702)
....+ .....++.+.+. ...+++++.++.|++||+.+++.+..+..| ...|++++|+|++ .+|+++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 11111 223347888887 445788889999999999999999988877 7889999999997 799999
Q ss_pred EcCC---eEEEEECCCC-cceeEEe-cccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccC
Q 005325 205 GEDG---AVECFDMRMR-SSAARIN-AVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMF 277 (702)
Q Consensus 205 s~DG---~V~iWD~~t~-~~v~~l~-~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~ 277 (702)
+.|+ .|++||++++ .++..+. .| ...|++++|+| + +.+|++|+.||.|+|||+++++++. +..|
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPLQTLNQGH------QKGILSLDWCHQD-EHLLLSSGRDNTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCSBCCCSCC------SSCEEEEEECSSC-SSCEEEEESSSEEEEECSSSCCEEEEEECS--
T ss_pred ECCCCCceEEEEeCCCCCCCcEEeecCc------cCceeEEEeCCCC-CCeEEEEeCCCCEEEeeCCCCccceeecCC--
Confidence 9999 9999999986 5666665 55 68999999999 7 9999999999999999999998877 5666
Q ss_pred CCCeEEEEEeeccCCC-CCeEEEeCCCEEEEEeCCCCceeEEec-----------------------------------C
Q 005325 278 DSPIVDIKWHQSINTE-RPKLITTDNHIVRIWDPETGESMTSIE-----------------------------------P 321 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~-~~ll~ss~Dg~V~IWd~~tg~~l~~i~-----------------------------------~ 321 (702)
..+|++++|+| ++ ..+++++.|+.|+|||+.++....... .
T Consensus 305 ~~~v~~~~~s~---~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 305 GNWCFKTKFAP---EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp SSCCCCEEECT---TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred CCceEEEEECC---CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 67999999998 34 344455579999999998765322211 1
Q ss_pred CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 322 TAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 322 h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
|..++++++|+|++.+|++++.|+.|.+|.+.
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 56788899999999999999999999999754
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=290.49 Aligned_cols=264 Identities=14% Similarity=0.161 Sum_probs=221.8
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEecCCcE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQV 87 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I 87 (702)
++++.+.++.|+||++..+ +. .+...+ .|...|++++|+|++.+ +++|+.|+.|
T Consensus 50 ~l~tgs~D~~v~vW~~~~~-~~-----------------------~~~~~l~gh~~~v~~~~~~~~~~~-l~s~s~D~~i 104 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE-RL-----------------------DLQWSLEGHQLGVVSVDISHTLPI-AASSSLDAHI 104 (321)
T ss_dssp EEEEEETTSCEEEEEEETT-EE-----------------------EEEEEECCCSSCEEEEEECSSSSE-EEEEETTSEE
T ss_pred EEEEEcCCCCEEEEECCCC-Ce-----------------------eeeeeeccCCCCEEEEEECCCCCE-EEEEeCCCcE
Confidence 4688899999999999876 21 111122 47889999999999998 8999999999
Q ss_pred EEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEecCCCcEEEE
Q 005325 88 KVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSCDLLCA 162 (702)
Q Consensus 88 ~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~ 162 (702)
++||+.+... .+..+.. .+..+.++|++.+|++++.|+.|.+|+.........+.. ...++.+.+.+..|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTT--CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCc--cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999988443 3334422 245567899999999999999999999884333333322 23378888888889999
Q ss_pred ecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEE
Q 005325 163 ASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEF 242 (702)
Q Consensus 163 s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslaf 242 (702)
+.++.|++||+.+++.+..+..|...|++++|+|++.+|++|+.||+|++||++++..+..+..| ...|++++|
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v~~~~~ 256 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH------ASWVLNVAF 256 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC------SSCEEEEEE
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC------CCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998888877 789999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 243 DSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 243 spd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
+|+ +.+|++|+.||+|+|||+++++++. +..| ..+|++++|+| ++..+++++.|+.|+|||+.
T Consensus 257 sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~---~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNG---NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTT-SSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECT---TSSEEEEEETTCCEEEEECC
T ss_pred CCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECC---CCCEEEEEeCCCeEEEEeCC
Confidence 999 9999999999999999999999887 5667 68999999998 45566677789999999963
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-32 Score=298.68 Aligned_cols=267 Identities=10% Similarity=0.145 Sum_probs=221.8
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
+|||. ++++++.++.|+||++..+ ..+ ..+ .|...|++++|+|+|++ |++|
T Consensus 117 ~p~~~-~l~s~s~Dg~i~vwd~~~~-~~~-------------------------~~l~~h~~~V~~v~~~~~~~~-l~sg 168 (410)
T 1vyh_C 117 HPVFS-VMVSASEDATIKVWDYETG-DFE-------------------------RTLKGHTDSVQDISFDHSGKL-LASC 168 (410)
T ss_dssp CSSSS-EEEEEESSSCEEEEETTTC-CCC-------------------------EEECCCSSCEEEEEECTTSSE-EEEE
T ss_pred cCCCC-EEEEEeCCCeEEEEECCCC-cEE-------------------------EEEeccCCcEEEEEEcCCCCE-EEEE
Confidence 56776 4677888999999999887 221 111 36788999999999998 8999
Q ss_pred ecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEecCC
Q 005325 82 IYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYNSWS 156 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s 156 (702)
+.|+.|+|||+.+... .+..|... +..+.++|++..|++++.|++|++|++........+.. ...++.+.+.+
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~--V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSC--EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 9999999999988443 34455433 77778899999999999999999999873322222222 22366777777
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC--------------------CCEEEEEEcCCeEEEEECC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL--------------------HGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~--------------------~~llasgs~DG~V~iWD~~ 216 (702)
..+++++.++.|++||+.++.+...+..|...|++++|+|+ +.+|++|+.|++|++||++
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 77899999999999999999999999999999999999996 6789999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
++.++..+..| ...|++|+|+|+ +.+|++|+.||.|+|||+++++++. +..| ..+|++++|+| ++..
T Consensus 327 ~~~~~~~~~~h------~~~v~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~---~~~~ 394 (410)
T 1vyh_C 327 TGMCLMTLVGH------DNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHK---TAPY 394 (410)
T ss_dssp TTEEEEEEECC------SSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEECS---SSSC
T ss_pred CCceEEEEECC------CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEcC---CCCE
Confidence 99999999887 689999999999 9999999999999999999988766 5667 67999999998 4556
Q ss_pred eEEEeCCCEEEEEeCC
Q 005325 296 KLITTDNHIVRIWDPE 311 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~ 311 (702)
+++++.|++|+||+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 7777789999999863
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=283.25 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=241.3
Q ss_pred eeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 54 ELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 54 eliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
..+.-..|...|++++|+|+|++ |++|+.|+.|+|||+.+... .+..|... +..+.+++++.+|++++.|+.|.+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTLDGHTGT--IWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhhhhhcCCc--EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 33444568999999999999999 89999999999999987433 45556433 666778889999999999999999
Q ss_pred EecCC-c-eEEEecCCCccceEEecCCCcEEEEecC-----CCEEEEECCCCe-----------EEEEeecCCC--CeEE
Q 005325 132 HAKYG-K-HYSLRIPRMGRDMAYNSWSCDLLCAASS-----PELYRINLEQGR-----------FLSSLNTQSP--ALNV 191 (702)
Q Consensus 132 w~~~g-~-~~~~~i~~~~~~l~~~~~s~~llv~s~d-----~~V~vwdl~~g~-----------~~~~l~~h~~--~V~~ 191 (702)
|++.. . ...+..+....++.+.+.+..+++++.+ +.|++||+..+. .+..+..|.. .+.+
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 99873 2 2333334444588888888888888888 999999987653 3344555665 8999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 005325 192 VSRSKLHGLIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI 270 (702)
Q Consensus 192 l~~sp~~~llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l 270 (702)
++|+|++.+|++|+.||.|++||+++ ...+..+..+ ...|++++|+|+ +.+|++++.||.|++||+++++++
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------EKSISDMQFSPD-LTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC------SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------CCceeEEEECCC-CCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999999999999998 7788888877 689999999999 999999999999999999999988
Q ss_pred EEeeccCCCCeEEEEEeeccCCCCCeEEEeCCC--------------EEEEEeCCCCceeEEecCCCCceeEEEEEcCCC
Q 005325 271 RVKDHMFDSPIVDIKWHQSINTERPKLITTDNH--------------IVRIWDPETGESMTSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 271 ~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg--------------~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~ 336 (702)
....+ ..++.+++|+| ++..+++++.++ .|++||+.+++++..+..|...|++++|+|++.
T Consensus 254 ~~~~~--~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 254 KKYET--DCPLNTAVITP---LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp EEEEC--SSCEEEEEECS---SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eeecC--CCCceeEEecC---CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 86666 67999999998 455555666666 899999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 005325 337 LLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 337 ~l~~a~~d~~I~~~~ip~ 354 (702)
+|++++.|+.|.+|.+..
T Consensus 329 ~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 329 SYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEEETTSEEEEEEECH
T ss_pred EEEEEcCCCeEEEEECcc
Confidence 999999999999998754
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=284.61 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=222.0
Q ss_pred eeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eE--EE-ee-ecCCceEEEEEEcCCCCEEEEEECC
Q 005325 54 ELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SL--KF-ER-HLDSEIINFEVLADDYSKLAFLCAD 126 (702)
Q Consensus 54 eliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~--~~-~~-h~~~~vv~~~~ls~dg~~Las~s~D 126 (702)
++++.+ .|...|.+++|+|+ + ||+|+.|+.|++|++... .. .+ .. |... +..+.++|++.+|++++.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~-las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~--v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--I-LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA--IRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--E-EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC--EEEEEECTTSSEEEEEETT
T ss_pred ccceeeccCCCceeeeccCCC--E-EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC--EEEEEECCCCCEEEEEeCC
Confidence 344444 48899999999998 4 999999999999999862 22 22 22 4333 6777789999999999999
Q ss_pred CeEEEEecCCc-------eEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCC----CeEEEEeecCCCCeEEE
Q 005325 127 RSISLHAKYGK-------HYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQ----GRFLSSLNTQSPALNVV 192 (702)
Q Consensus 127 ~~I~iw~~~g~-------~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~----g~~~~~l~~h~~~V~~l 192 (702)
++|+||+.... .....+.. ...++.+.+....|++++.|+.|++||+.. .+++..+..|...|+++
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 99999988421 11111222 233788888877799999999999999943 35678889999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCC--cceeEEecccCCCCCCCCeEEEEEcCCC-CCEEEEEeCCCeEEEEEcCCC--
Q 005325 193 SRSKLHGLIACGGEDGAVECFDMRMR--SSAARINAVAPAGDADQEVTALEFDSNG-GFLMGVGSSTGKVLIYDLRSS-- 267 (702)
Q Consensus 193 ~~sp~~~llasgs~DG~V~iWD~~t~--~~v~~l~~~~~~~~~~~~Vtslafspd~-g~~LasGs~DG~V~lwDlrs~-- 267 (702)
+|+|++.+|++|+.|++|++||+.++ .++..+..| ...|.+++|+|+. +.+|++|+.|++|+|||++.+
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH------EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC------SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC------CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999999999999999999876 567777777 7899999999973 358999999999999999764
Q ss_pred ------eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc--eeEE-ecCCCC-ceeEEEEEc--CC
Q 005325 268 ------YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE--SMTS-IEPTAG-KINDVCVFK--DS 335 (702)
Q Consensus 268 ------~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~--~l~~-i~~h~~-~I~~v~~~p--~~ 335 (702)
.+.......+..+|.+++|+| ++.+++++.|+.|+|||..++. .+.. +..|.. .|++++|+| ++
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~ 309 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGF----NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK 309 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECT----TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----
T ss_pred cccceeEEeeecccccccceEEEEEcC----CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc
Confidence 223322211367999999996 6678888899999999998874 3433 367777 899999999 67
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 005325 336 GLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 336 ~~l~~a~~d~~I~~~~ip 353 (702)
.+|++++.|+.|.+|.+.
T Consensus 310 ~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 310 TILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CCEEEEETTSEEEEEEC-
T ss_pred eEEEEecCCCcEEEEEec
Confidence 899999999999999864
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=292.47 Aligned_cols=282 Identities=13% Similarity=0.044 Sum_probs=213.2
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.|+||. +|.+.++.++++|+.+.. .|....... ..-.....+.+...|++++|+||+. |++|
T Consensus 38 fs~dG~--~l~~~sd~~~r~Wd~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~ 99 (344)
T 4gqb_B 38 YRSDGA--LLLGASSLSGRCWAGSLW-----LFKDPCAAP---------NEGFCSAGVQTEAGVADLTWVGERG--ILVA 99 (344)
T ss_dssp ECTTSC--EEEEEECCSSSCCCEEEE-----EESSGGGTT---------CGGGCSEEEEESSCEEEEEEETTTE--EEEE
T ss_pred ECCCCC--EEEEEeCCceEEeeceee-----eeccccccC---------CcceeeeeeccCCCEEEEEEeCCCe--EEEE
Confidence 478998 566666889999975432 111100000 0001122234567899999999964 5799
Q ss_pred ecCCcEEEEEcCCce----E--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCC---ccceEE
Q 005325 82 IYPPQVKVYELRQLS----L--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRM---GRDMAY 152 (702)
Q Consensus 82 s~dg~I~vwdl~~~~----~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~---~~~l~~ 152 (702)
+.|+.|+|||+.+.. . ....|.+. +..+.+++++.+|++++.|++|++|++........+..+ ..++.+
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~--V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDI--VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCC--EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence 999999999998721 2 23355444 777789999999999999999999999843333333322 237777
Q ss_pred ecCCCc-EEEEecCCCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEeccc
Q 005325 153 NSWSCD-LLCAASSPELYRINLEQGRFLSSLN--TQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 153 ~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
.+.... +++++.|+.|++||+.+++.+..+. .|...+++++|+|++ .+|++|+.||+|+|||+++++++..+..|
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h- 256 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH- 256 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC-
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC-
Confidence 777765 5778889999999999999887764 355579999999965 78999999999999999999999999988
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEE
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRI 307 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~I 307 (702)
...|++|+|+|++..+|++|+.||+|+|||+++++++.+.+| ...|++|+|+| ++..+|+ ++.|++|++
T Consensus 257 -----~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H--~~~V~~v~~sp---~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 257 -----SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH--RDFVRDATWSP---LNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp -----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC--SSCEEEEEECS---SSTTEEEEEETTSCEEE
T ss_pred -----CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC--CCCEEEEEEeC---CCCeEEEEEcCCCeEEE
Confidence 789999999999336799999999999999999998888888 68999999998 4556665 457999999
Q ss_pred EeCCCCc
Q 005325 308 WDPETGE 314 (702)
Q Consensus 308 Wd~~tg~ 314 (702)
|++.+..
T Consensus 327 w~v~~~~ 333 (344)
T 4gqb_B 327 HVVPTEP 333 (344)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 9998653
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-31 Score=284.95 Aligned_cols=267 Identities=12% Similarity=0.159 Sum_probs=216.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++||. ++++++.++.|+||++..+ ..+. .+ -.+...|.+++|+|+|++ |++|+
T Consensus 64 s~d~~-~l~s~s~Dg~v~iWd~~~~-~~~~----------------------~~--~~~~~~v~~~~~s~~~~~-l~s~~ 116 (340)
T 1got_B 64 GTDSR-LLLSASQDGKLIIWDSYTT-NKVH----------------------AI--PLRSSWVMTCAYAPSGNY-VACGG 116 (340)
T ss_dssp CTTSS-EEEEEETTTEEEEEETTTC-CEEE----------------------EE--ECSSSCEEEEEECTTSSE-EEEEE
T ss_pred CCCCC-EEEEEeCCCcEEEEECCCC-Ccce----------------------Ee--ecCCccEEEEEECCCCCE-EEEEe
Confidence 57776 4678888999999999877 2110 11 125677999999999999 89999
Q ss_pred cCCcEEEEEcCCc------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEe
Q 005325 83 YPPQVKVYELRQL------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYN 153 (702)
Q Consensus 83 ~dg~I~vwdl~~~------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~ 153 (702)
.|+.|++|++.+. ...+..|... +..+.++++ ..+++++.|++|++|++........+.. ...++.+.
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGY--LSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSC--EEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCcc--EEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 9999999999762 2245556433 556666666 4699999999999999884333333322 23377888
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCC
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDA 233 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~ 233 (702)
+.+..+++++.++.|++||+.++..+..+..|...|++++|+|++.+|++|+.||+|++||+++++.+..+... .+
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~----~~ 269 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----NI 269 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----TC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC----Cc
Confidence 87777899999999999999999999999999999999999999999999999999999999998887776544 22
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
...|++++|+|+ |.+|++|+.||.|+|||+.++.++. +.+| ..+|++++|+| ++..+++++.|++|+|||
T Consensus 270 ~~~v~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~---dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 270 ICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTD---DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECT---TSSCEEEEETTSCEEEEC
T ss_pred ccceEEEEECCC-CCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcC---CCCEEEEEcCCccEEecC
Confidence 457999999999 9999999999999999999988776 5677 68999999998 455666777899999997
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-31 Score=311.47 Aligned_cols=279 Identities=16% Similarity=0.116 Sum_probs=234.3
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc-------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL-------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~-------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
.|...|+||+|+|++..+|+||+.|+.|+||++... ...+..|... +..+.+++++.+|++++.|++|+||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~--v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF--VEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSC--EEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCc--EEEEEECCCCCEEEEEeCCCcEEEE
Confidence 589999999999987655999999999999998751 2356667544 7777889999999999999999999
Q ss_pred ecCCceEEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeEEEEEcCCC--CEEEEE
Q 005325 133 AKYGKHYSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALNVVSRSKLH--GLIACG 204 (702)
Q Consensus 133 ~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~~l~~sp~~--~llasg 204 (702)
++........+.. ...++.+++.+..+++++.|+.|++||+......... .+|...|+|++|+|++ .+|++|
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 9984333322222 2337888888888999999999999998765443332 4688899999999987 689999
Q ss_pred EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEE
Q 005325 205 GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDI 284 (702)
Q Consensus 205 s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl 284 (702)
+.|++|++||+++++.+..+..| ...|++|+|+|+ +.+|++|+.||.|+|||+++++++....+ ...|.++
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h------~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~ 608 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGH------TGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHAL 608 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEcCC------CCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEE
Confidence 99999999999999988888877 789999999999 99999999999999999999998875544 4689999
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC-------------------CceeEEEEEcCCCEEEEEeCCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTA-------------------GKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~-------------------~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
+|+| ++.+++++.++.|+|||+.++.++..+..|. ..|++++|+|++.+|++++.|+
T Consensus 609 ~~sp----~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 609 CFSP----NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EECS----SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEcC----CCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9998 7788888888889999999998887775432 1378899999999999999999
Q ss_pred cEEEEEcC
Q 005325 346 QIPSYFIP 353 (702)
Q Consensus 346 ~I~~~~ip 353 (702)
.|++|.+.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999874
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-31 Score=291.28 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=241.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
||||.. ++.++.++.|+||++..+ ... ..+.....+.+..|+|+|++ |++|+
T Consensus 65 s~~g~~-l~~~~~d~~v~i~d~~~~-~~~-------------------------~~~~~~~~~~~~~~~~~~~~-l~~~~ 116 (420)
T 3vl1_A 65 EKVGSH-LYKARLDGHDFLFNTIIR-DGS-------------------------KMLKRADYTAVDTAKLQMRR-FILGT 116 (420)
T ss_dssp EEEETT-EEEEEETTEEEEEECCSE-ETT-------------------------TTSCSCCEEEEEEECSSSCE-EEEEE
T ss_pred eecCCe-EEEEEcCCcEEEEEeccc-cee-------------------------eEEecCCceEEEEEecCCCE-EEEEE
Confidence 567765 577888999999999876 221 11112244556678999999 89999
Q ss_pred cCCcEEEEEcCCceEEE--eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cc-eEEEec-CCCccceEEecCCC
Q 005325 83 YPPQVKVYELRQLSLKF--ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GK-HYSLRI-PRMGRDMAYNSWSC 157 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~~~--~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~-~~~~~i-~~~~~~l~~~~~s~ 157 (702)
.++.|++||+.+..... ..|.. .+..+.++|++.+|++++.|+.|++|++. +. ...+.. .....++.+.+...
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREIDQAHVS--EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp TTSCEEEECTTSCEEEEETTSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCcceeeecccccC--ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 99999999998855433 34533 36777789999999999999999999987 32 222322 22334888888888
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecC---CCCeEEE---------------------EEcCCCCEEEEEEcCCeEEEE
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQ---SPALNVV---------------------SRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h---~~~V~~l---------------------~~sp~~~llasgs~DG~V~iW 213 (702)
.+++++.++.|++||+.+++.+..+..| ...|.++ +|+|++.+|++|+.||.|++|
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 8999999999999999999999888753 3445554 457888999999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcCCCe-EEE-EeeccCCCCeEEEEEeecc
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF-LMGVGSSTGKVLIYDLRSSY-PIR-VKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~-~LasGs~DG~V~lwDlrs~~-~l~-~~~h~~~~~I~sl~fsp~~ 290 (702)
|++++..+..+... |...|++++|+|+ +. +|++|+.||.|++||++++. ++. +..| +..+|.++.|.+
T Consensus 275 d~~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~-- 345 (420)
T 3vl1_A 275 NVFSKEQTIQLPSK-----FTCSCNSLTVDGN-NANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYFAA-- 345 (420)
T ss_dssp ETTTCCEEEEECCT-----TSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEEET--
T ss_pred ECCCCceeEEcccc-----cCCCceeEEEeCC-CCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEeCC--
Confidence 99999887777553 3689999999999 77 99999999999999999874 344 4553 367899997763
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCC---------ceeEEecCCCCceeEEEEEcCCC---EEEEEeCCCcEEEEEcC
Q 005325 291 NTERPKLITTDNHIVRIWDPETG---------ESMTSIEPTAGKINDVCVFKDSG---LLLLALDCSQIPSYFIP 353 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg---------~~l~~i~~h~~~I~~v~~~p~~~---~l~~a~~d~~I~~~~ip 353 (702)
+..+++++.|+.|+||++.+. .....+..|...|.+++|+|++. .+++++.++.+.+|.+.
T Consensus 346 --~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 346 --GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp --TEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred --CCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 556666678999999998763 22334567788999999999988 78888999999999874
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.9e-31 Score=277.97 Aligned_cols=275 Identities=14% Similarity=0.251 Sum_probs=219.2
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
++++..++++++.++.|+||++... ... +. ..+..| .|...|++++|+|||++ |++|
T Consensus 26 ~~~~~~~l~s~s~D~~v~~W~~~~~-~~~-----------------~~---~~~~~~~~h~~~v~~~~~s~dg~~-l~s~ 83 (319)
T 3frx_A 26 SAGQPNLLLSASRDKTLISWKLTGD-DQK-----------------FG---VPVRSFKGHSHIVQDCTLTADGAY-ALSA 83 (319)
T ss_dssp CSSCTTEEEEEETTSEEEEEEEEEE-TTE-----------------EE---EEEEEEECCSSCEEEEEECTTSSE-EEEE
T ss_pred cCCCccEEEEecCCccEEEecCCCC-Ccc-----------------cc---ccceEEeCCcccEEEEEECCCCCE-EEEE
Confidence 4666666788899999999999865 110 00 112222 47889999999999999 8999
Q ss_pred ecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCC--ccceEEecCCC
Q 005325 82 IYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRM--GRDMAYNSWSC 157 (702)
Q Consensus 82 s~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~--~~~l~~~~~s~ 157 (702)
+.|++|+|||+.+.. ..+..|... +..+.+++++..|++++.|++|++|+..+.......... ..++.+.+...
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999999998844 356667444 667778999999999999999999999876544333222 22666666432
Q ss_pred ------cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCC
Q 005325 158 ------DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAG 231 (702)
Q Consensus 158 ------~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~ 231 (702)
.+++++.++.|++||+.+++....+.+|...|++++|+|++.+|++|+.||+|++||+.+++.+..+..+
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---- 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---- 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC----
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC----
Confidence 4889999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eec------cCCCCeEEEEEeeccCCCCCeEEEeCCCE
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDH------MFDSPIVDIKWHQSINTERPKLITTDNHI 304 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h------~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~ 304 (702)
..|.+++|+|+ +.+|++++.+ .|++|++.....+.. ..+ .+...|.+++|+| ++..+++++.|+.
T Consensus 238 ---~~v~~~~~sp~-~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~sg~~Dg~ 309 (319)
T 3frx_A 238 ---DEVFSLAFSPN-RYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA---DGQTLFAGYTDNV 309 (319)
T ss_dssp ---SCEEEEEECSS-SSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT---TSSEEEEEETTSC
T ss_pred ---CcEEEEEEcCC-CCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC---CCCEEEEeecCce
Confidence 78999999999 9999988765 599999988765542 211 1245799999998 5555666778999
Q ss_pred EEEEeCCCC
Q 005325 305 VRIWDPETG 313 (702)
Q Consensus 305 V~IWd~~tg 313 (702)
|+|||+.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999998764
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.1e-31 Score=284.00 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=225.9
Q ss_pred eeeecc-cCCCceeEEEECCCC-CEEEEEEecCCcEEEEEcCCceE--EEe--eecCCceEEEEEEcC-CCCEEEEEECC
Q 005325 54 ELIQDL-WFETATTKIRETPDG-EFLIVSGIYPPQVKVYELRQLSL--KFE--RHLDSEIINFEVLAD-DYSKLAFLCAD 126 (702)
Q Consensus 54 eliqd~-~~~~~v~~i~~SpDG-~~llatGs~dg~I~vwdl~~~~~--~~~--~h~~~~vv~~~~ls~-dg~~Las~s~D 126 (702)
.++..+ .|...|++++|+|+| ++ |++|+.|+.|+|||+.+... .+. .| ... +..+.+++ ++..|++++.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTT-VAVGSKGGDIILWDYDVQNKTSFIQGMGP-GDA-ITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTE-EEEEEBTSCEEEEETTSTTCEEEECCCST-TCB-EEEEEEETTEEEEEEEEETT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCE-EEEEcCCCeEEEEeCCCcccceeeecCCc-CCc-eeEEEeCCCCCCEEEEEeCC
Confidence 344443 478999999999999 66 99999999999999987332 333 34 333 55555666 77999999999
Q ss_pred CeEEEEecCCceEEEecCC-----CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-E
Q 005325 127 RSISLHAKYGKHYSLRIPR-----MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-L 200 (702)
Q Consensus 127 ~~I~iw~~~g~~~~~~i~~-----~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-l 200 (702)
+.|.+|+..+......... ...++.+.+....+++++.++.|++||+ +++.+..+..|...|++++|+|++. +
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999999986544332222 2348888888888999999999999999 6788899999999999999999998 9
Q ss_pred EEEEEcCCeEEEEECCC----CcceeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeEEE-Eee
Q 005325 201 IACGGEDGAVECFDMRM----RSSAARINAVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKD 274 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t----~~~v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~ 274 (702)
|++|+.|++|++||+++ +..+..+. + ...|++++|+| + +.+|++++.||.|+|||++++..+. +..
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~------~~~v~~~~~s~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP-H------EKPVNAAYFNPTD-STKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE-C------SSCEEEEEECTTT-SCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec-C------CCceEEEEEcCCC-CCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 99999999999999997 55666663 4 58999999999 8 9999999999999999999876533 333
Q ss_pred cc-----CC----------CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC--CCCceeEEEEEcCCCE
Q 005325 275 HM-----FD----------SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP--TAGKINDVCVFKDSGL 337 (702)
Q Consensus 275 h~-----~~----------~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~--h~~~I~~v~~~p~~~~ 337 (702)
|. +. ..+..++|+| ++.+ +++.|+.|+|||+.+++++..+.. |...+..++|+|++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~----dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYP----DDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBC----CTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred ccccccccccceEEeccCCCCceEEEecC----Cccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 32 11 2344466665 4445 556899999999999999999987 4577888899999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 005325 338 LLLALDCSQIPSYFIP 353 (702)
Q Consensus 338 l~~a~~d~~I~~~~ip 353 (702)
|++++ |+.|.+|.+.
T Consensus 367 l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 367 LASGM-GFNILIWNRE 381 (383)
T ss_dssp EEEEE-TTEEEEEECC
T ss_pred EEEec-CCcEEEEecC
Confidence 99997 8999999875
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-31 Score=290.42 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=232.7
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
.....+++++|+|+|++ |++|+.|+.|++||+.+........ ...++.+.++++++.+|++++.|+.|.+|+......
T Consensus 54 ~~~~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 54 RGVDAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKMLK-RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp TCCBCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTTSC-SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeEEe-cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 34455678999999999 8999999999999998733322212 225677878999999999999999999999885444
Q ss_pred EEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 140 SLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 140 ~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
...+.. ...++.+.+....|++++.++.|++||+.+++.+..+..|...|++++|+|++.+|++|+.||+|++||++
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 433322 23378888877779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEecccCC------------------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCC
Q 005325 217 MRSSAARINAVAPA------------------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFD 278 (702)
Q Consensus 217 t~~~v~~l~~~~~~------------------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~ 278 (702)
+++.+..+..+... ..+...|++++|+|+ +.+|++|+.||.|++||++++.++......+.
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 290 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT 290 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence 99998888764210 001244555566888 99999999999999999999887764433347
Q ss_pred CCeEEEEEeeccCCCC-CeEEEeCCCEEEEEeCCCCc-eeEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 279 SPIVDIKWHQSINTER-PKLITTDNHIVRIWDPETGE-SMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~-~ll~ss~Dg~V~IWd~~tg~-~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.+|++++|+| ++. .+++++.|+.|+|||+.++. ++..+.. |...|+++ ++|++.+|++++.|+.|.+|.+...
T Consensus 291 ~~v~~~~~~~---~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 291 CSCNSLTVDG---NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEECS---SCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCT
T ss_pred CCceeEEEeC---CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCC
Confidence 8999999998 344 46666789999999999875 4777776 56788888 5567789999999999999998874
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-31 Score=284.53 Aligned_cols=291 Identities=12% Similarity=0.146 Sum_probs=240.4
Q ss_pred ccceeeeecccCCCceeEEEECCCCC-EEEEEEecCCcEEEEEc----CCce------E--EEeeec--------CCceE
Q 005325 50 QRRVELIQDLWFETATTKIRETPDGE-FLIVSGIYPPQVKVYEL----RQLS------L--KFERHL--------DSEII 108 (702)
Q Consensus 50 ~~rieliqd~~~~~~v~~i~~SpDG~-~llatGs~dg~I~vwdl----~~~~------~--~~~~h~--------~~~vv 108 (702)
......+....+...|++++|+|+|+ + ||+|+.|+.|++|++ .+.. . .+.... ....+
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 33 DGFVKILKEIVKLDNIVSSTWNPLDESI-LAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV 111 (425)
T ss_dssp -CCCEECEEEEECSCCSEEEECSSCTTE-EEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred hhhhhheeeeeccCceEEEEECCCCCcE-EEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence 34455666777789999999999999 7 899999999999999 6533 1 222200 12246
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC--CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC
Q 005325 109 NFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR--MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS 186 (702)
Q Consensus 109 ~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~--~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~ 186 (702)
..+.+++++.+|++++.|+.|.+|+..+......... ...++.+.+.+..+++++.++.|++||+.+++.+..+..|.
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 7777899999999999999999999666544432222 23378888887789999999999999999999999998887
Q ss_pred CC---------------eEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 187 PA---------------LNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 187 ~~---------------V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
.. +.+++|+|++ .+++++.+|.|++||+.++..+..+..+ ...|++++|+|+ +.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~ 263 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH------HGPISVLEFNDT-NKLLL 263 (425)
T ss_dssp --------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC------SSCEEEEEEETT-TTEEE
T ss_pred cCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC------CCceEEEEECCC-CCEEE
Confidence 76 9999999874 6889999999999999999988888877 689999999999 99999
Q ss_pred EEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEE
Q 005325 252 VGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVC 330 (702)
Q Consensus 252 sGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~ 330 (702)
+++.||.|++||+++++++. +..| ..+|.+++|+| ++.+++++.|+.|+|||+.+++++..+..|...|++++
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVG----DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEET----TTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EEcCCCEEEEEECCCCccceEecCC--CccEEEEEECC----CCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE
Confidence 99999999999999988766 4456 67999999998 44677777899999999999999999999999999999
Q ss_pred EEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 331 VFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 331 ~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
|+|++.+|++++.++.|.+|.+...
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999998653
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-30 Score=274.79 Aligned_cols=250 Identities=9% Similarity=0.104 Sum_probs=210.8
Q ss_pred eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE--EecCC-CccceEEecCCCcEEEEecCCCEEEEE
Q 005325 96 SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS--LRIPR-MGRDMAYNSWSCDLLCAASSPELYRIN 172 (702)
Q Consensus 96 ~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~~-~~~~l~~~~~s~~llv~s~d~~V~vwd 172 (702)
...+..|.+. +..+.++|++.+|++++.|++|++|+....... +..+. ...++.+.+....+++++.++.|++||
T Consensus 6 ~~~~~~h~~~--V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 6 KKTFSNRSDR--VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEEEEECSC--EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred EEeecCCCCc--eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 3467778655 778889999999999999999999999843322 22222 234788888888899999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEE
Q 005325 173 LEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMG 251 (702)
Q Consensus 173 l~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~La 251 (702)
+.+++.+..+..|...|++++|+|++.+|++|+.||+|++||++++. ....+..| ...|++++|+|.++.+|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH------EHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC------CSCEEEEEECTTCTTEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc------CCcEEEEEECCCCCCEEE
Confidence 99999999999999999999999999999999999999999999774 44556666 789999999995489999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEE
Q 005325 252 VGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 252 sGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
+|+.||+|+|||+++..+.......+...|..+.|+|.. ++..+++++.|++|+|||+.+++++..+.+|...|++++|
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST-TCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC-CCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 999999999999998776543222235789999998721 2334666678999999999999999999999999999999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|++.+|++++.|+.|.+|.+..
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999999998754
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-30 Score=279.11 Aligned_cols=268 Identities=12% Similarity=0.162 Sum_probs=216.7
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++||. ++++++.++.|+||++..+ +.. ..+. .+...|.+++|+|+|.+ +|+|+
T Consensus 73 s~d~~-~l~s~s~Dg~v~vWd~~~~-~~~----------------------~~~~--~~~~~v~~~~~sp~g~~-lasg~ 125 (354)
T 2pbi_B 73 CKDKR-RIVSSSQDGKVIVWDSFTT-NKE----------------------HAVT--MPCTWVMACAYAPSGCA-IACGG 125 (354)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTTC-CEE----------------------EEEE--CSSSCCCEEEECTTSSE-EEEES
T ss_pred CCCCC-EEEEEeCCCeEEEEECCCC-Ccc----------------------eEEe--cCCCCEEEEEECCCCCE-EEEee
Confidence 57776 4688889999999998776 211 0011 24467899999999999 89999
Q ss_pred cCCcEEEEEcCC--------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCc---cceE
Q 005325 83 YPPQVKVYELRQ--------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMG---RDMA 151 (702)
Q Consensus 83 ~dg~I~vwdl~~--------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~---~~l~ 151 (702)
.|+.|++|++.. ....+..|... +..+.+++++..|++++.|++|++|++........+..+. .++.
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNY--LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSC--EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCc--EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 999999999864 23355566444 7778889999999999999999999988432222222222 2555
Q ss_pred EecC--CCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 152 YNSW--SCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 152 ~~~~--s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
+.+. ...+++++.|+.|++||+.+++++..+..|...|++++|+|++.+|++|+.|++|++||+++...+..+..+
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-- 281 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-- 281 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC--
Confidence 6554 345888999999999999999999999999999999999999999999999999999999998877766544
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
.+...+++++|+|+ +.+|++|+.|+.|+|||+.++.++. +..| ..+|++++|+| ++..+++++.|++|+||
T Consensus 282 --~~~~~~~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~sp---dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 282 --SIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSP---DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --TCCSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECT---TSSCEEEEETTSEEEEE
T ss_pred --CcccceeEEEEeCC-CCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECC---CCCEEEEEcCCCCEEec
Confidence 22457999999999 9999999999999999999988776 5667 78999999998 55667777789999999
Q ss_pred e
Q 005325 309 D 309 (702)
Q Consensus 309 d 309 (702)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=295.43 Aligned_cols=284 Identities=13% Similarity=0.159 Sum_probs=225.2
Q ss_pred eeeecc--cCCCceeEEEECC-CCCEEEEEEecCCcEEEEEcCC------ceEEEe-eecCCceEEEEEEcCCCCEEEEE
Q 005325 54 ELIQDL--WFETATTKIRETP-DGEFLIVSGIYPPQVKVYELRQ------LSLKFE-RHLDSEIINFEVLADDYSKLAFL 123 (702)
Q Consensus 54 eliqd~--~~~~~v~~i~~Sp-DG~~llatGs~dg~I~vwdl~~------~~~~~~-~h~~~~vv~~~~ls~dg~~Las~ 123 (702)
+++..+ .|...|++|+|+| ++++ ||+|+.|+.|+|||+.+ ....+. .| ... +..+.+++++..|+++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPY-LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDC-SST-VTQITMIPNFDAFAVS 129 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCE-EEEEETTSEEEEEEHHHHHTTCCCSCSEEEEC-SSC-EEEEEECTTSSEEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCE-EEEecCCceEEEeECcccccCcccceeeeccC-CCC-EEEEEEeCCCCEEEEE
Confidence 345555 3689999999999 9998 89999999999999865 211222 34 333 6666678899999999
Q ss_pred ECCCeEEEEecC----CceEE---------EecC---CCc--cceEE--ecCCCcEEEEecCCCEEEEECCCCeEEEEee
Q 005325 124 CADRSISLHAKY----GKHYS---------LRIP---RMG--RDMAY--NSWSCDLLCAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 124 s~D~~I~iw~~~----g~~~~---------~~i~---~~~--~~l~~--~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
+.|++|++|++. +.... +.+. ... .++.+ .+....+++++.++.|++||+.+++.+..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999873 32221 1111 111 13332 2344558889999999999999999999998
Q ss_pred c--CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC----CCCCEEEEEeCCC
Q 005325 184 T--QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS----NGGFLMGVGSSTG 257 (702)
Q Consensus 184 ~--h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp----d~g~~LasGs~DG 257 (702)
. |...|++++|+|++.+|++|+.||+|++||++++.++..+... |...|++++|+| + +.+|++|+.||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~s~~-~~~l~s~~~dg 283 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-----DHAPITHVEVCQFYGKN-SVIVVGGSSKT 283 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-----TCEEEEEEEECTTTCTT-EEEEEEESTTE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-----CCCceEEEEeccccCCC-ccEEEEEcCCC
Confidence 8 8899999999999999999999999999999999998888633 157899996664 5 77999999999
Q ss_pred eEEEEEcCCCeEEE-Eeecc------------------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 258 KVLIYDLRSSYPIR-VKDHM------------------------FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 258 ~V~lwDlrs~~~l~-~~~h~------------------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
.|+|||+++++++. +..|. +..+|++++|++ +..+++++.|+.|+|||+.+
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN----DKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET----TEEEEEEGGGTEEEEEETTC
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC----ceEEEecCCCCeEEEEECCC
Confidence 99999999988776 34331 345688999984 55566677899999999999
Q ss_pred CceeEEecC-------------------------------------CCCceeEEEEEcC--CCEEEEEeCCCcEEEE
Q 005325 313 GESMTSIEP-------------------------------------TAGKINDVCVFKD--SGLLLLALDCSQIPSY 350 (702)
Q Consensus 313 g~~l~~i~~-------------------------------------h~~~I~~v~~~p~--~~~l~~a~~d~~I~~~ 350 (702)
++.+..+.. |...|++++|+++ ..+|++++.+|.|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 888777765 7889999999998 7799999999999998
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8e-30 Score=283.02 Aligned_cols=301 Identities=11% Similarity=0.103 Sum_probs=237.8
Q ss_pred CCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEec
Q 005325 5 GGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGIY 83 (702)
Q Consensus 5 dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs~ 83 (702)
+|. ++++++.++.|+||++..+ + ++..+ .|...|++++|+|++ + +++|+.
T Consensus 131 ~~~-~l~sgs~dg~i~vwd~~~~-~-------------------------~~~~~~~h~~~V~~l~~~~~~-~-l~s~s~ 181 (464)
T 3v7d_B 131 EDN-YVITGADDKMIRVYDSINK-K-------------------------FLLQLSGHDGGVWALKYAHGG-I-LVSGST 181 (464)
T ss_dssp ETT-EEEEEETTSCEEEEETTTT-E-------------------------EEEEECCCSSCEEEEEECSTT-E-EEEEET
T ss_pred CCC-EEEEEcCCCcEEEEECCCC-c-------------------------EEEEEeCCCcCEEEEEEcCCC-E-EEEEeC
Confidence 443 4677888999999999887 2 12222 488999999999998 4 899999
Q ss_pred CCcEEEEEcCCceE--EEeeecCCceEEEEEEc-CCCCEEEEEECCCeEEEEecCCceE---------------------
Q 005325 84 PPQVKVYELRQLSL--KFERHLDSEIINFEVLA-DDYSKLAFLCADRSISLHAKYGKHY--------------------- 139 (702)
Q Consensus 84 dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls-~dg~~Las~s~D~~I~iw~~~g~~~--------------------- 139 (702)
|+.|++||+.+... .+..| ...+..+.+.. +++..|++++.|++|.+|+......
T Consensus 182 dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCC-SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCCEEEEECCCCcEEEEECCC-CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 99999999988443 45555 44444444433 6778999999999999999873211
Q ss_pred --EEecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 140 --SLRIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 140 --~~~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
......+.. .....+....+++++.++.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||++
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp TEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 111111222 22334445558889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCe
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPK 296 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~l 296 (702)
+++++..+..| ...|++++|+ +.+|++|+.||.|++||+++........| ...+..++|+| ++.+
T Consensus 341 ~~~~~~~~~~h------~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~----~~~~ 405 (464)
T 3v7d_B 341 NGELMYTLQGH------TALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYV----SDNI 405 (464)
T ss_dssp TTEEEEEECCC------SSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEE----CSSE
T ss_pred CCcEEEEEeCC------CCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEe----CCCE
Confidence 99999999887 7899999997 46999999999999999999887665555 56788899998 6667
Q ss_pred EEEeCCCEEEEEeCCCCceeEE-ecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 297 LITTDNHIVRIWDPETGESMTS-IEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 297 l~ss~Dg~V~IWd~~tg~~l~~-i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
++++.|+.|+|||+.+++++.. +..|...|++++|+ +..++++++.++.+.+|.
T Consensus 406 l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 406 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 7777799999999999999886 67789999999997 344555555666555543
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.4e-31 Score=284.16 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=191.8
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce------EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS------LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~------~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
..+...|++++|+|++.+ ++++.|+.|+|||+.+.. .....|.. .+..+.++|++.+|++++.|++|++|
T Consensus 91 ~~~~~~V~~~~~s~d~~~--l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGI--LVASDSGAVELWEILEKESLLVNKFAKYEHDD--IVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp EECSSCEEEEEEETTTEE--EEEETTSCEEEC--------CCCCEEECCCSS--CEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CCCCCCEEEEEEcCCCCE--EEEECCCEEEEeeccccceeEEEeeccCCCCC--CEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 457788999999999975 467789999999997622 23334533 37777789999999999999999999
Q ss_pred ecCCceEEEecCC---CccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCC-CEEEEEE
Q 005325 133 AKYGKHYSLRIPR---MGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLN--TQSPALNVVSRSKLH-GLIACGG 205 (702)
Q Consensus 133 ~~~g~~~~~~i~~---~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~-~llasgs 205 (702)
+.........+.. ...++.+.+.... +++++.++.|++||+.+++.+..+. .|...|++++|+|++ .+|++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 9985443333332 2236777777654 7788899999999999998776554 456689999999985 7899999
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIK 285 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~ 285 (702)
.|+.|++||+++++++..+..+ ...|++|+|+|+++.+||+|+.||+|+|||+++++++....| ..+|++|+
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H--~~~V~~va 318 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSAVH------SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH--RDFVTGVA 318 (357)
T ss_dssp SSSCEEEEESSCGGGCEEECCC------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC--SSCEEEEE
T ss_pred cccceeEEECCCCcEeEEEecc------ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC--CCCEEEEE
Confidence 9999999999999999999887 689999999999446899999999999999999999888888 68999999
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
|+| .++..+++++.|++|+||++.+.
T Consensus 319 fsP--~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 319 WSP--LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECS--SSTTEEEEEETTSCEEEEECC--
T ss_pred EeC--CCCCEEEEEcCCCeEEEEECCCC
Confidence 998 33445566678999999999753
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.5e-31 Score=284.09 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=231.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--------EEEeeecCCceEEEEEEcCC----C---CEEEEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--------LKFERHLDSEIINFEVLADD----Y---SKLAFLC 124 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--------~~~~~h~~~~vv~~~~ls~d----g---~~Las~s 124 (702)
.|...|++|+|+| .+ |++|+.|+.|+||++.... ..+..|... +..+.++++ + .+|++++
T Consensus 14 ~h~~~i~~~~~~~--~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 14 AHDADIFSVSACN--SF-TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp CSSSCEEEEEECS--SE-EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhcCeEEEEecC--Ce-EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEc
Confidence 4889999999999 56 8999999999999998743 355556333 566667777 8 9999999
Q ss_pred CCCeEEEEecC-Cc------eEEEecC------CCccceEEe----cCCCc-EEEEecCCCEEEEECCC------CeEEE
Q 005325 125 ADRSISLHAKY-GK------HYSLRIP------RMGRDMAYN----SWSCD-LLCAASSPELYRINLEQ------GRFLS 180 (702)
Q Consensus 125 ~D~~I~iw~~~-g~------~~~~~i~------~~~~~l~~~----~~s~~-llv~s~d~~V~vwdl~~------g~~~~ 180 (702)
.|+.|.+|+.. +. ...+... ....++.+. +.+.. +++++.++.|++||+.+ +..+.
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 99999999887 33 3333333 333488888 77888 88999999999999988 66555
Q ss_pred -----Eee-------cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCC---CCCeEEEEEcCC
Q 005325 181 -----SLN-------TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDA---DQEVTALEFDSN 245 (702)
Q Consensus 181 -----~l~-------~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~---~~~Vtslafspd 245 (702)
.+. .|...|++++|+|++ +|++|+.||.|++||+++++.+..+... ..| ...|++++|+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ---HSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC---C---CCCCCEEEEEECSS
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc---ccccccCCccceEEECCC
Confidence 663 488899999999999 9999999999999999999988888861 012 478999999999
Q ss_pred CCCEEEEEeCC---CeEEEEEcCCCeEEE-Eee-------------ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEE
Q 005325 246 GGFLMGVGSST---GKVLIYDLRSSYPIR-VKD-------------HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIW 308 (702)
Q Consensus 246 ~g~~LasGs~D---G~V~lwDlrs~~~l~-~~~-------------h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IW 308 (702)
+.+|++++.| |.|++||+++++++. +.. | ..+|.+++|+| ++..+++++.|+.|+||
T Consensus 245 -~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 245 -GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH--SSWVMSLSFND---SGETLCSAGWDGKLRFW 318 (397)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB--SSCEEEEEECS---SSSEEEEEETTSEEEEE
T ss_pred -CCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc--CCcEEEEEECC---CCCEEEEEeCCCeEEEE
Confidence 9999999999 999999999998877 444 6 68999999998 45556666689999999
Q ss_pred eCCCCceeEEec------CC---------------CCceeEEEEEcCC----------CEEEEEeCCCcEEEEEcCC
Q 005325 309 DPETGESMTSIE------PT---------------AGKINDVCVFKDS----------GLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 309 d~~tg~~l~~i~------~h---------------~~~I~~v~~~p~~----------~~l~~a~~d~~I~~~~ip~ 354 (702)
|+.+++++..+. .| ...|++++|+|++ .+|++++.|+.|.+|.+..
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 999999999999 88 8999999999998 7999999999999998753
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-30 Score=277.93 Aligned_cols=278 Identities=12% Similarity=0.099 Sum_probs=228.0
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
+...|++++|+|||++ |++|+.++.|++||+.+.. ..+..|... +..+.+++++.+|++++.|+.|.+|+...
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc--ccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 6789999999999999 8999999999999998853 244555333 66677888999999999999999999874
Q ss_pred ce-E-EEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCe----EEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 137 KH-Y-SLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGR----FLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 137 ~~-~-~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~----~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
.. . ...+.. ...++.+.+.+..+++++.++.|++||+..+. .......|...|++++|+|++.+|++|+.|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 32 2 222222 23378888887779999999999999998876 233336688899999999999999999999
Q ss_pred CeEEEEECC------------------CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE
Q 005325 208 GAVECFDMR------------------MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 208 G~V~iWD~~------------------t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~ 269 (702)
|.|++||++ .+..+..+..+ ...|++++|+|+ +.+|++++.||.|++||++++++
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS------CGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC------SSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCC------CCeEEEEEECCC-CCEEEEEeCCCEEEEEECCCCce
Confidence 999999964 56667777665 689999999999 99999999999999999999888
Q ss_pred EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC--Cce-------------------------------
Q 005325 270 IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET--GES------------------------------- 315 (702)
Q Consensus 270 l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t--g~~------------------------------- 315 (702)
+. +..| ..+|.+++|+| ++.+++++.|+.|+||++.+ +..
T Consensus 237 ~~~~~~~--~~~v~~~~~~~----~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 237 VATLASE--TLPLLAVTFIT----ESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp EEEEECS--SCCEEEEEEEE----TTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred eEEEccC--CCCeEEEEEec----CCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 77 5555 67999999998 66788888999999999987 421
Q ss_pred -e------EEe-cCCCCceeEEEEEc-CC---CEEEEEeCCCcEEEEEcCC
Q 005325 316 -M------TSI-EPTAGKINDVCVFK-DS---GLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 316 -l------~~i-~~h~~~I~~v~~~p-~~---~~l~~a~~d~~I~~~~ip~ 354 (702)
. ..+ .+|...|++++|++ ++ .+|++++.|+.|.+|.+..
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 48999999999885 55 7999999999999998754
No 41
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-30 Score=281.93 Aligned_cols=293 Identities=13% Similarity=0.156 Sum_probs=230.1
Q ss_pred CCCceeEEEECC-CCCEEEEEEecCCcEEEEEcCCceE--EEe-------------eecCCceEEEEEEcC-CCCEEEEE
Q 005325 61 FETATTKIRETP-DGEFLIVSGIYPPQVKVYELRQLSL--KFE-------------RHLDSEIINFEVLAD-DYSKLAFL 123 (702)
Q Consensus 61 ~~~~v~~i~~Sp-DG~~llatGs~dg~I~vwdl~~~~~--~~~-------------~h~~~~vv~~~~ls~-dg~~Las~ 123 (702)
|...|++++|+| ++++ |++|+.|+.|++|++.+... .+. .| ... +..+.+++ ++..|+++
T Consensus 42 h~~~v~~~~~s~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRY-MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH-RYS-VETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCE-EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC-SSC-EEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCE-EEEEcCCCeEEEEECCCCcccceEeccccccccccccccC-CCc-EEEEEEccCCCcEEEEE
Confidence 789999999999 9998 89999999999999987221 111 24 344 44455565 77899999
Q ss_pred ECCCeEEEEecCCceE--EEecCCCccceEEecCCC---cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC
Q 005325 124 CADRSISLHAKYGKHY--SLRIPRMGRDMAYNSWSC---DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 124 s~D~~I~iw~~~g~~~--~~~i~~~~~~l~~~~~s~---~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
+.|+.|.+|+...... .+..+.....+.+.+.+. .+++++.++.|++||+.++..+..+..|...|++++|+|++
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 9999999999985333 233344445778887665 48888999999999999999999999999999999999999
Q ss_pred C-EEEEEEcCCeEEEEECCCCc-ceeEEeccc---------CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 199 G-LIACGGEDGAVECFDMRMRS-SAARINAVA---------PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 199 ~-llasgs~DG~V~iWD~~t~~-~v~~l~~~~---------~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
. +|++|+.||.|++||+++.. ++..+..+. ....|...|++++|+|+ +.+|++|+.||.|++||++++
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCC
Confidence 7 79999999999999999775 455443221 11346789999999999 999999999999999999998
Q ss_pred eEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 268 YPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 268 ~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
+... ...+........+.+.........+++++.++.|+|||+.+++++..+.+|...|++++|+|++.+|++++.|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 7654 222211111112222211134677888889999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCC
Q 005325 347 IPSYFIPDLGP 357 (702)
Q Consensus 347 I~~~~ip~lg~ 357 (702)
|.+|.+....+
T Consensus 358 i~iw~~~~~~~ 368 (408)
T 4a11_B 358 ILAWVPSLYEP 368 (408)
T ss_dssp EEEEEECC---
T ss_pred EEEEeCCCCCc
Confidence 99999877544
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.1e-30 Score=270.26 Aligned_cols=278 Identities=14% Similarity=0.188 Sum_probs=219.2
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
+||++.++++++.|+.|+||++..+ ..... ..++.+ .|...|++++|+|||++ |++|
T Consensus 47 sp~~~~~l~S~s~D~~i~vWd~~~~-~~~~~--------------------~~~~~l~~h~~~V~~~~~s~dg~~-l~s~ 104 (340)
T 4aow_A 47 TPQFPDMILSASRDKTIIMWKLTRD-ETNYG--------------------IPQRALRGHSHFVSDVVISSDGQF-ALSG 104 (340)
T ss_dssp CTTCTTEEEEEETTSCEEEEEECCS-SSCSE--------------------EEEEEECCCSSCEEEEEECTTSSE-EEEE
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCC-Ccccc--------------------eeeEEEeCCCCCEEEEEECCCCCE-EEEE
Confidence 6787667788899999999999876 22100 011122 47789999999999999 8999
Q ss_pred ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec-CCCc---cceEEecCCC
Q 005325 82 IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI-PRMG---RDMAYNSWSC 157 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i-~~~~---~~l~~~~~s~ 157 (702)
+.|+.|++|+.....................+++++..|++++.|+.+.+|+..+....... .... ..+.+.+...
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999999986554444434445777778899999999999999999998854443332 2222 2455555544
Q ss_pred c--EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCC
Q 005325 158 D--LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 158 ~--llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~ 235 (702)
. +++++.++.|++||+.+++.+..+..|...|++|+|+|++.+|++|+.||+|++||+++...+..+..+ .
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-------~ 257 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-------D 257 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-------S
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-------c
Confidence 3 567788999999999999999999999999999999999999999999999999999999999888876 7
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--------eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEE
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK--------DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRI 307 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~--------~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~I 307 (702)
.|++++|+|+ +. +++++.|+.|+|||+++...+... ...+...|++|+|+| ++..+++++.|+.|+|
T Consensus 258 ~v~~~~~~~~-~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 258 IINALCFSPN-RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA---DGQTLFAGYTDNLVRV 332 (340)
T ss_dssp CEEEEEECSS-SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT---TSSEEEEEETTSCEEE
T ss_pred eEEeeecCCC-Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC---CCCEEEEEeCCCEEEE
Confidence 8999999998 65 556677999999999987765421 112367899999998 4555666778999999
Q ss_pred EeCCCCc
Q 005325 308 WDPETGE 314 (702)
Q Consensus 308 Wd~~tg~ 314 (702)
||+.+|.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9999885
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-30 Score=266.18 Aligned_cols=277 Identities=13% Similarity=0.135 Sum_probs=228.7
Q ss_pred eeeecc-cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEE
Q 005325 54 ELIQDL-WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSIS 130 (702)
Q Consensus 54 eliqd~-~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~ 130 (702)
++++.+ .|...|++++| |++.+ |++|+.|+.|++||+.+... .+..| ...+..+.+++++..|++++.|+.|.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTVVYTG--QGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEEeecC--CccEEEEEECCCCCEEEEecCCCeEE
Confidence 344444 47899999999 99999 89999999999999987443 44444 23366777888999999999999999
Q ss_pred EEecCCc---eEEEecCCCcc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-CCCEEEE
Q 005325 131 LHAKYGK---HYSLRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-LHGLIAC 203 (702)
Q Consensus 131 iw~~~g~---~~~~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-~~~llas 203 (702)
+|++... .....+..+.. ++.+ ....+++++.++.|++|| .+..+..+..|...|.+++|+| ++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987632 11111222222 4444 344588899999999999 7788889999999999999988 8899999
Q ss_pred EEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeE
Q 005325 204 GGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIV 282 (702)
Q Consensus 204 gs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~ 282 (702)
++.||.|++|| ....+..+... +...|++++|+|+ +. |++|+.||.|++||+++++++. +..| ..+|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~-----~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~ 229 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGI-----HNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVY 229 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSS-----CSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEE
T ss_pred EECCCCEEEEe--cCceEEEEecc-----CcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcC--CceEE
Confidence 99999999999 44566666652 2689999999999 76 9999999999999999998877 5556 68999
Q ss_pred EEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 283 DIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+++|+| ++.+++++.|+.|+|||+.+++++..+..|...|++++|+|++. +++++.++.|.+|.+..
T Consensus 230 ~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 230 CIKLLP----NGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEECT----TSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EEEEec----CCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 999998 55788888999999999999999999999999999999999988 67799999999998765
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-30 Score=280.21 Aligned_cols=290 Identities=14% Similarity=0.170 Sum_probs=213.6
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||||. .|.+..++.|+||++..+ ..+......... ..++ ..+...........|++++|+|||++ ||+|
T Consensus 72 fspdg~--~la~g~~~~v~i~~~~~g-~~~~~l~~~~~~---~~~~---~~~~~~~~~~~~~~v~~v~~s~dg~~-l~s~ 141 (393)
T 1erj_A 72 FSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA---NKDP---ENLNTSSSPSSDLYIRSVCFSPDGKF-LATG 141 (393)
T ss_dssp ECTTSS--EEEEECBSCEEEEETTTC-CEEEEECC-----------------------CCCCBEEEEEECTTSSE-EEEE
T ss_pred ECCCCC--EEEEEcCCcEEEEEecCC-CEEEEecCcccc---cccc---ccccccccCCCceeEEEEEECCCCCE-EEEE
Confidence 378988 456666889999999887 332211110000 0000 00011111123345899999999999 8999
Q ss_pred ecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE--EecCCCccceEEec-CC
Q 005325 82 IYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS--LRIPRMGRDMAYNS-WS 156 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~~~~~~l~~~~-~s 156 (702)
+.|+.|+|||+.+... .+..|... +..+.+++++..|++++.|++|++|++...... +........+.+.+ ..
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred cCCCeEEEEECCCCcEEEEEccCCCC--EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 9999999999988443 55566443 667778899999999999999999998843322 33333444777877 44
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEe-------ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----------
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSL-------NTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS---------- 219 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l-------~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~---------- 219 (702)
..+++++.++.|++||+.++..+..+ .+|...|++++|+|++.+|++|+.||+|++||+++..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 45888899999999999999888776 5788999999999999999999999999999998643
Q ss_pred --ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeecc--C-CC
Q 005325 220 --SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSI--N-TE 293 (702)
Q Consensus 220 --~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~--~-~~ 293 (702)
+...+..| ...|++++|+|+ +.+|++|+.||.|++||+++++++. +.+| ..+|.+++|+|.. . ++
T Consensus 300 ~~~~~~~~~h------~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 300 GTCEVTYIGH------KDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp -CEEEEEECC------SSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSSCTTCTTC
T ss_pred CcceEEEecc------cCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEEEEEecCCcCcCCCC
Confidence 33344444 789999999999 9999999999999999999999877 5667 6799999998621 1 23
Q ss_pred CCeEEEeCCCEEEEEeCCC
Q 005325 294 RPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~t 312 (702)
..+++++.|++|+||++..
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred CEEEEECCCCcEEECcccc
Confidence 3455666899999999764
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-31 Score=288.71 Aligned_cols=289 Identities=15% Similarity=0.233 Sum_probs=236.0
Q ss_pred CceeEEEECCCCCEEEEEE----------ecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCe
Q 005325 63 TATTKIRETPDGEFLIVSG----------IYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRS 128 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatG----------s~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~ 128 (702)
..+++++|+|+|+.+|++| +.|+.|+||++.+.. .....| .. .+..+.+++++.+|++++.|+.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~-~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV-DS-KFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC-SS-CEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec-CC-ceEEEEECCCCCeEEEEccCCe
Confidence 4688999999998559999 889999999998742 222234 22 3666778999999999999999
Q ss_pred EEEEecCC----ceEEEecCC---CccceEEecC-CCcEEEEecCCCEEEEECCCCe------EEE---EeecCCCCeEE
Q 005325 129 ISLHAKYG----KHYSLRIPR---MGRDMAYNSW-SCDLLCAASSPELYRINLEQGR------FLS---SLNTQSPALNV 191 (702)
Q Consensus 129 I~iw~~~g----~~~~~~i~~---~~~~l~~~~~-s~~llv~s~d~~V~vwdl~~g~------~~~---~l~~h~~~V~~ 191 (702)
|.+|+... ......+.. ...++.+.+. ...+++++.++.|++||+.++. ... .+..|...|++
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999875 222222222 2347888887 5668888999999999999886 322 34678899999
Q ss_pred EEEcCC-CCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCC
Q 005325 192 VSRSKL-HGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRSS 267 (702)
Q Consensus 192 l~~sp~-~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs~ 267 (702)
++|+|+ +.+|++|+.||.|++||+++++.+..+..+.....|...|++++|+|++..+|++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999999 699999999999999999999998888876433344689999999999337999999999 9999999986
Q ss_pred -eEEEE-e-eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC-CEEEEEeC
Q 005325 268 -YPIRV-K-DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS-GLLLLALD 343 (702)
Q Consensus 268 -~~l~~-~-~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~-~~l~~a~~ 343 (702)
.++.. . .| ..+|++++|+| .++..+++++.|+.|+|||+.+++++..+..|...|++++|+|++ .+|++++.
T Consensus 251 ~~~~~~~~~~~--~~~v~~~~~s~--~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 251 NTPLQTLNQGH--QKGILSLDWCH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSCSBCCCSCC--SSCEEEEEECS--SCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCcEEeecCc--cCceeEEEeCC--CCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 45553 3 46 68999999997 345566677789999999999999999999999999999999998 79999999
Q ss_pred CCcEEEEEcCCCCC
Q 005325 344 CSQIPSYFIPDLGP 357 (702)
Q Consensus 344 d~~I~~~~ip~lg~ 357 (702)
|+.|.+|.+.....
T Consensus 327 d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 327 DNKIEVQTLQNLTN 340 (416)
T ss_dssp SSEEEEEESCCCCC
T ss_pred CCcEEEEEccCCCC
Confidence 99999999987654
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=276.84 Aligned_cols=281 Identities=15% Similarity=0.164 Sum_probs=221.9
Q ss_pred cCCCceeEEEECCCCCEEEEEEec---CCcEEEEEcCCceE--E-EeeecCCceEEEEEEcCC---CCEEEEEECCCeEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIY---PPQVKVYELRQLSL--K-FERHLDSEIINFEVLADD---YSKLAFLCADRSIS 130 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~---dg~I~vwdl~~~~~--~-~~~h~~~~vv~~~~ls~d---g~~Las~s~D~~I~ 130 (702)
.|...|++++|+|++..++++|+. |+.|+||++.+... . ...|... +..+.++++ +..|++++.|+.|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKP--IKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSC--EEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCc--EEEEEEcCCCCCCceEEEecCCCeEE
Confidence 388999999999999887888887 99999999988433 2 2245333 666678887 69999999999999
Q ss_pred EEecCCc---eEEEecCC-CccceEEe------cCCCcEEEEecCCCEEEEECCCCe-EEEEeecCCC----CeEEEE--
Q 005325 131 LHAKYGK---HYSLRIPR-MGRDMAYN------SWSCDLLCAASSPELYRINLEQGR-FLSSLNTQSP----ALNVVS-- 193 (702)
Q Consensus 131 iw~~~g~---~~~~~i~~-~~~~l~~~------~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h~~----~V~~l~-- 193 (702)
+|+.... ...+..+. ...++.+. +.+..+++++.++.|++||+.++. .+..+..|.. .|++++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 9998732 22222211 22255443 445568899999999999999987 6777766654 799998
Q ss_pred --EcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC---CCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 194 --RSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS---NGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 194 --~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp---d~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
|+|++.+|++|+.||.|++||+++++.+..... ...|++++|+| + +.+|++|+.||.|++||++++.
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCC-------CCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeCcCCC
Confidence 678999999999999999999999887554333 48999999999 8 9999999999999999999765
Q ss_pred EEE------EeeccCCCCeEEEEEeeccCCCC-CeEEEeCCCEEEEEeCCCC-------------------ceeEEecCC
Q 005325 269 PIR------VKDHMFDSPIVDIKWHQSINTER-PKLITTDNHIVRIWDPETG-------------------ESMTSIEPT 322 (702)
Q Consensus 269 ~l~------~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss~Dg~V~IWd~~tg-------------------~~l~~i~~h 322 (702)
++. ...| ..+|++++|+| ++. .+++++.|+.|+|||+.++ .++..+..|
T Consensus 246 ~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 246 PTKGFASVSEKAH--KSTVWQVRHLP---QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp TTTEEEEEEEECC--SSCEEEEEEET---TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred cccceeeeccCCC--cCCEEEEEECC---CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 432 2256 78999999998 334 4556668999999999754 467788899
Q ss_pred CCceeEEEEEcCCCEEE-EEeCCCcEEEEEcCCC
Q 005325 323 AGKINDVCVFKDSGLLL-LALDCSQIPSYFIPDL 355 (702)
Q Consensus 323 ~~~I~~v~~~p~~~~l~-~a~~d~~I~~~~ip~l 355 (702)
...|++++|+|++.+|+ +++.|+.|.+|.+..+
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999999999999888 7999999999998765
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-29 Score=262.11 Aligned_cols=279 Identities=13% Similarity=0.134 Sum_probs=223.7
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce-EEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH-YSL 141 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~-~~~ 141 (702)
+++|+||+++ + ||+|. |++|+|||+.+.. ..+..+.....+..+.+++++.+|++++.|++|++|+..... ...
T Consensus 28 ~~~l~WS~~~-~-lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-V-LAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTS-E-EEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCC-E-EEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 5789999987 4 77765 8999999998843 234444344457888899999999999999999999998433 333
Q ss_pred ecCCCccceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc
Q 005325 142 RIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS 220 (702)
Q Consensus 142 ~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~ 220 (702)
...+......+...+..+++++.++.+.+|+...+ ..+..+..|...+.++.+++.+.+|++++.||+|++||+++++.
T Consensus 105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 22233334444445555788888999999988775 56677889999999999999999999999999999999998764
Q ss_pred e----eEEecccCCCCCCCCeEEEEEcCCCCCEE--EEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 221 A----ARINAVAPAGDADQEVTALEFDSNGGFLM--GVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 221 v----~~l~~~~~~~~~~~~Vtslafspd~g~~L--asGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
. ..... +...|.+++++|++...+ ++|+.++.|+|||.+.........+ ..+|..+.|+| .+.
T Consensus 185 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~--~~~v~~~~~~~---~~~ 253 (318)
T 4ggc_A 185 GWVPLQTFTQ------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSP---HYK 253 (318)
T ss_dssp BSCCSEEECC------CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEEET---TTT
T ss_pred cccceeeecc------cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc--eeeeeeeeecc---ccc
Confidence 3 22223 368899999999844444 4667889999999999888776666 57899999998 455
Q ss_pred CeEEEe--CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 295 PKLITT--DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 295 ~ll~ss--~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
.+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+|++.+|++++.|+.|++|.+-.+.|
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 555544 599999999999999999999999999999999999999999999999999876644
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-31 Score=292.80 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=216.2
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcC-CCCEEEEEECCCeEEEEec
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLAD-DYSKLAFLCADRSISLHAK 134 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~ 134 (702)
.|...|+||+|+|....+||+|+.||.|+|||+.... +.+.+|. ..| ..+.|+| ++.+|++++.|++|++|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~-~~V-~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-GSI-TGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS-CCC-CEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC-CCE-EEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 3667899999999655449999999999999997622 2344563 334 4455564 7899999999999999999
Q ss_pred CCceEEEecCC-----CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCC
Q 005325 135 YGKHYSLRIPR-----MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDG 208 (702)
Q Consensus 135 ~g~~~~~~i~~-----~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG 208 (702)
.+......... ...++.+.+....+++++.++.|++||+. ++.+..+.+|...|++|+|+|++ .+|++|+.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 86554433222 12367888888889999999999999986 45667888999999999999998 5899999999
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCC----CCeEE
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFD----SPIVD 283 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~----~~I~s 283 (702)
+|+|||+++......+... ..|...|++|+|+|+ |.+|++|+.||.|+|||++++.... +..|.+. ..+..
T Consensus 274 ~v~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYS---LPHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK 349 (435)
T ss_dssp BCCEEETTTCCSSSCCSBC---CBCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred eeeEEecccccccceEEEe---eeccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence 9999999987655443221 235789999999999 9999999999999999999877554 4444211 12345
Q ss_pred EEEeeccCCCCCeEEEe------------CCCEEEEEeCCCCceeEEec-CCCCceeEE-EEEcCCCEEEEEeCCCcEEE
Q 005325 284 IKWHQSINTERPKLITT------------DNHIVRIWDPETGESMTSIE-PTAGKINDV-CVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss------------~Dg~V~IWd~~tg~~l~~i~-~h~~~I~~v-~~~p~~~~l~~a~~d~~I~~ 349 (702)
+.|+| .+..+++++ +++.|+|||..+|+.+..+. +|...|.++ +|+|++.+|++++ ++.|.+
T Consensus 350 ~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 350 AAWHP---RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CEECS---SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred EEEcC---CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 56766 222333322 35689999999999988864 678889987 5999999888765 778999
Q ss_pred EEcCC
Q 005325 350 YFIPD 354 (702)
Q Consensus 350 ~~ip~ 354 (702)
|.+..
T Consensus 426 W~~~~ 430 (435)
T 4e54_B 426 WSQQE 430 (435)
T ss_dssp CCCC-
T ss_pred EECCc
Confidence 87543
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=7.9e-30 Score=273.29 Aligned_cols=281 Identities=10% Similarity=0.118 Sum_probs=211.3
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||||.. +++++.++.|+||++..+ .... .......|...|++++|+|+|++ ||+|
T Consensus 24 ~sp~g~~-las~~~D~~i~iw~~~~~-~~~~---------------------~~~~~~~h~~~v~~~~~sp~g~~-l~s~ 79 (345)
T 3fm0_A 24 WNPAGTL-LASCGGDRRIRIWGTEGD-SWIC---------------------KSVLSEGHQRTVRKVAWSPCGNY-LASA 79 (345)
T ss_dssp ECTTSSC-EEEEETTSCEEEEEEETT-EEEE---------------------EEEECSSCSSCEEEEEECTTSSE-EEEE
T ss_pred ECCCCCE-EEEEcCCCeEEEEEcCCC-ccee---------------------eeeeccccCCcEEEEEECCCCCE-EEEE
Confidence 3688874 577788999999999877 2110 01111257889999999999999 8999
Q ss_pred ecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc--eEEE-ecCC---CccceE
Q 005325 82 IYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK--HYSL-RIPR---MGRDMA 151 (702)
Q Consensus 82 s~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~--~~~~-~i~~---~~~~l~ 151 (702)
+.|+.|+||++.... ..+..|... +..+.++|++.+|++++.|++|++|++... ...+ .+.. ...++.
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHENE--VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCCCC--ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 999999999987632 345566444 677778999999999999999999998632 1111 1222 233778
Q ss_pred EecCCCcEEEEecCCCEEEEECCCCe--EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----------
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQGR--FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS---------- 219 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g~--~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~---------- 219 (702)
+++....|++++.++.|.+||+.++. +...+.+|...|++|+|+|++.+|++|+.|++|+|||.....
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 88888889999999999999998885 456788999999999999999999999999999999974321
Q ss_pred -----ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe----EEE-E-----eeccCCCCeEEE
Q 005325 220 -----SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY----PIR-V-----KDHMFDSPIVDI 284 (702)
Q Consensus 220 -----~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~----~l~-~-----~~h~~~~~I~sl 284 (702)
++..+.. .|...|++++|+|+ +..|++++.|+.|+||++.... +.. + ..| ...|++|
T Consensus 238 ~~~~~~~~~~~~-----~h~~~v~~v~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v 309 (345)
T 3fm0_A 238 DPSWKCICTLSG-----FHSRTIYDIAWCQL-TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCV 309 (345)
T ss_dssp -CEEEEEEEECS-----SCSSCEEEEEECTT-TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEE
T ss_pred CCccceeEEecC-----CCCCcEEEEEEecC-CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEe
Confidence 2223322 24789999999999 9999999999999999987542 111 1 234 7899999
Q ss_pred EEeeccCCCC-CeEEEeCCCEEEEEeCCCCceeEEe
Q 005325 285 KWHQSINTER-PKLITTDNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 285 ~fsp~~~~~~-~ll~ss~Dg~V~IWd~~tg~~l~~i 319 (702)
+|+| ++. .+++++.|++|+||++.+++.+...
T Consensus 310 ~~~p---~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 310 AWNP---KEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EECS---SSTTEEEEEETTSCEEEEEECC-------
T ss_pred EEeC---CCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 9998 343 4555668999999999987765443
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=4.8e-29 Score=274.24 Aligned_cols=281 Identities=12% Similarity=0.125 Sum_probs=225.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEE
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSL 141 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~ 141 (702)
.+++|+||+++ . ||+|. |++|+|||+.+... .+..+.....|..+.|++++.+|++++.|++|.||+........
T Consensus 107 y~~~l~wS~~n-~-lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSGN-V-LAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTTS-E-EEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCCC-E-EEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 46889999865 4 77775 89999999988433 34433334457888899999999999999999999998433333
Q ss_pred ecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc
Q 005325 142 RIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS 219 (702)
Q Consensus 142 ~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~ 219 (702)
.+..+.. ..++...+..+++++.++.+++||.... ..+..+.+|...+.++.|+|++.++++++.|+.|++||..+++
T Consensus 184 ~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 3333333 3333333445788888999999998764 5667889999999999999999999999999999999998765
Q ss_pred c----eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE--eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCC
Q 005325 220 S----AARINAVAPAGDADQEVTALEFDSNGGFLMGVG--SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 220 ~----v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG--s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
. +.....+ ...|.+++|+|.+...++++ +.|++|+|||++++.++....+ ...|.++.|+| ++
T Consensus 264 ~~~~~~~~~~~~------~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~---~~ 332 (420)
T 4gga_A 264 GGWVPLQTFTQH------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSP---HY 332 (420)
T ss_dssp SCSCCSEEECCC------SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEET---TT
T ss_pred ccceeeeeeccc------CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc--ccceeeeeecC---CC
Confidence 3 3444444 78999999999856677664 5799999999999998886555 46899999998 45
Q ss_pred CCeEEEe--CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005325 294 RPKLITT--DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 294 ~~ll~ss--~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~a 358 (702)
..+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+|++.+|++|+.|+.|++|.+-.+.+.
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 5566554 5899999999999999999999999999999999999999999999999998776553
No 51
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=7.8e-31 Score=284.96 Aligned_cols=279 Identities=14% Similarity=0.171 Sum_probs=214.1
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
+|||.. +++++.++.|+||++..+ ..+ ..+ .|...|.+++|+|+|++ ||+|
T Consensus 75 sp~~~~-l~s~s~D~~v~iWd~~~~-~~~-------------------------~~~~~h~~~v~~~~~s~~g~~-las~ 126 (380)
T 3iz6_a 75 TPEKNW-IVSASQDGRLIVWNALTS-QKT-------------------------HAIKLHCPWVMECAFAPNGQS-VACG 126 (380)
T ss_dssp CTTSSC-EEEEETTSEEEEEETTTT-EEE-------------------------EEEECCCTTCCCCEECTTSSE-EEEC
T ss_pred cCCCCE-EEEEeCCCeEEEEECCCC-ccc-------------------------eEEecCCCCEEEEEECCCCCE-EEEe
Confidence 677764 688889999999999877 211 111 25677999999999999 8999
Q ss_pred ecCCcEEEEEcCCc---------eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEEe---cCC-C-
Q 005325 82 IYPPQVKVYELRQL---------SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSLR---IPR-M- 146 (702)
Q Consensus 82 s~dg~I~vwdl~~~---------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~~---i~~-~- 146 (702)
+.|+.|+||++... ...+.+|. ..+..+.+.+.+...|++++.|++|++|++. +...... .+. +
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCC-cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 99999999998651 22455663 3344455444456789999999999999987 3333221 111 1
Q ss_pred --ccceEEecCCC-cEEEEecCCCEEEEECC-CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCccee
Q 005325 147 --GRDMAYNSWSC-DLLCAASSPELYRINLE-QGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA 222 (702)
Q Consensus 147 --~~~l~~~~~s~-~llv~s~d~~V~vwdl~-~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~ 222 (702)
..++.+.+... .+++++.|+.|++||+. .+..+..+.+|...|++++|+|++.+|++|+.||+|++||++++..+.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 12556655444 47888899999999997 557788899999999999999999999999999999999999999888
Q ss_pred EEecccCC-CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee---ccCCCCeEEEEEeeccCCCCCeEE
Q 005325 223 RINAVAPA-GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD---HMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 223 ~l~~~~~~-~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~---h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
.+..+... ..+...|++++|+|+ |.+|++|+.||.|+|||+..++.+.... ..+..+|++++|+| ++..+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~s 361 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS---DGSALCT 361 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS---SSSEEEE
T ss_pred EecccccccccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC---CCCEEEE
Confidence 88765211 122346999999999 9999999999999999999888765321 22378999999998 4455555
Q ss_pred EeCCCEEEEEeCCCCc
Q 005325 299 TTDNHIVRIWDPETGE 314 (702)
Q Consensus 299 ss~Dg~V~IWd~~tg~ 314 (702)
++.|++|+||++...+
T Consensus 362 gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 362 GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECTTSCEEEEECCSSS
T ss_pred eeCCCCEEEEecCCCc
Confidence 6689999999998654
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=5e-30 Score=273.18 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=221.2
Q ss_pred cCCCceeEEEECCC---CCEEEEEEecCCcEEEEEcCCc--eEEEeeecC---CceEEEEEEcCC----CCEEEEEECCC
Q 005325 60 WFETATTKIRETPD---GEFLIVSGIYPPQVKVYELRQL--SLKFERHLD---SEIINFEVLADD----YSKLAFLCADR 127 (702)
Q Consensus 60 ~~~~~v~~i~~SpD---G~~llatGs~dg~I~vwdl~~~--~~~~~~h~~---~~vv~~~~ls~d----g~~Las~s~D~ 127 (702)
.|...|++++|+|+ +..++++++.++.|+||++.+. ...+..+.. ...+..+.++++ +.+|++++.|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 58899999999985 5544666666779999999862 223333321 123555566767 56899999999
Q ss_pred eEEEEecCCceEEEecC---CCccceEEec-CCCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeEEEEEcCCCCE
Q 005325 128 SISLHAKYGKHYSLRIP---RMGRDMAYNS-WSCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALNVVSRSKLHGL 200 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~---~~~~~l~~~~-~s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~~l~~sp~~~l 200 (702)
.|.+|+.........+. ....++.+.+ ....+++++.++.|++||+.+++.+..+ ..|...|++++|+|++.+
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence 99999987322222222 2333788888 5556888889999999999999999888 689999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEeccc----------------------CCCCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVA----------------------PAGDADQEVTALEFDSNGGFLMGVGSSTGK 258 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~----------------------~~~~~~~~Vtslafspd~g~~LasGs~DG~ 258 (702)
|++|+.||.|++||+++++.+..+.... ....|...|++++|+ +.+|++++.||.
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~ 252 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENA 252 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCE
Confidence 9999999999999999876554443200 001257899999998 569999999999
Q ss_pred EEEEEcCCCeE--------------EE-EeeccCCCCeEEEEEeeccCC--CCCeEEEeCCCEEEEEeCCCCc----eeE
Q 005325 259 VLIYDLRSSYP--------------IR-VKDHMFDSPIVDIKWHQSINT--ERPKLITTDNHIVRIWDPETGE----SMT 317 (702)
Q Consensus 259 V~lwDlrs~~~--------------l~-~~~h~~~~~I~sl~fsp~~~~--~~~ll~ss~Dg~V~IWd~~tg~----~l~ 317 (702)
|++||+++... +. +..| ..+|++++|+| + +..+++++.|+.|+|||+.+++ .+.
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~---~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSM---DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEE---CTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred EEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcC---CCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 99999987643 33 4455 67899999998 3 3445556679999999999876 444
Q ss_pred EecCC--CCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 318 SIEPT--AGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 318 ~i~~h--~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
.+..| ...|++++|+|++.+|++++.|+.|.+|.+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 77777 7899999999999999999999999999763
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=2.4e-29 Score=287.74 Aligned_cols=315 Identities=12% Similarity=0.109 Sum_probs=234.5
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCC---ceeEEEECCC-CCEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFET---ATTKIRETPD-GEFL 77 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~---~v~~i~~SpD-G~~l 77 (702)
++||..+++.++.++.|+||++..+ + ++..+ .+.. .|++++|+|+ |++
T Consensus 169 ~~~~~~~l~~~~~d~~v~vwd~~~~-~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~- 221 (615)
T 1pgu_A 169 KQSRPMRSMTVGDDGSVVFYQGPPF-K-------------------------FSASDRTHHKQGSFVRDVEFSPDSGEF- 221 (615)
T ss_dssp CSSSSCEEEEEETTTEEEEEETTTB-E-------------------------EEEEECSSSCTTCCEEEEEECSTTCCE-
T ss_pred CCCCCcEEEEEeCCCcEEEEeCCCc-c-------------------------eeeeecccCCCCceEEEEEECCCCCCE-
Confidence 5677656788888899999998776 2 12222 2555 8999999999 998
Q ss_pred EEEEecCCcEEEEEcCCceE--EE-e---eecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE--EecCC----
Q 005325 78 IVSGIYPPQVKVYELRQLSL--KF-E---RHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS--LRIPR---- 145 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~--~~-~---~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~--~~i~~---- 145 (702)
|++|+.++.|++||+.+... .+ . .| ... +..+.++ ++..|++++.|+.|++|+....... +..+.
T Consensus 222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~-v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 298 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGG-IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 298 (615)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSC-EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred EEEEeCCCeEEEEECCCCCEeEEeccccccc-CCc-eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc
Confidence 89999999999999987443 33 2 34 333 5555566 8899999999999999999843222 33221
Q ss_pred -CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC---------------------------
Q 005325 146 -MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL--------------------------- 197 (702)
Q Consensus 146 -~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~--------------------------- 197 (702)
....+.+ +....+++++.++.|++||+.+++.+..+..|...|++++| |+
T Consensus 299 ~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~ 376 (615)
T 1pgu_A 299 NQQVGVVA-TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIV 376 (615)
T ss_dssp GCEEEEEE-EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred CceeEEEe-CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceE
Confidence 1113444 35556889999999999999998888888777766666666 43
Q ss_pred ------CCEEEEEEcCCeEEEEECCCCc----------------------------------cee---------------
Q 005325 198 ------HGLIACGGEDGAVECFDMRMRS----------------------------------SAA--------------- 222 (702)
Q Consensus 198 ------~~llasgs~DG~V~iWD~~t~~----------------------------------~v~--------------- 222 (702)
+..|++++.|+.|++||+.++. .+.
T Consensus 377 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (615)
T 1pgu_A 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ 456 (615)
T ss_dssp EEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred EEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcC
Confidence 4555666666666666554211 000
Q ss_pred --------------EEecc------cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-ee-ccCCCC
Q 005325 223 --------------RINAV------APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KD-HMFDSP 280 (702)
Q Consensus 223 --------------~l~~~------~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~-h~~~~~ 280 (702)
.+... .....|...|++++|+|+ +.+|++|+.||.|+|||+.+++++.. .. | ..+
T Consensus 457 ~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h--~~~ 533 (615)
T 1pgu_A 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFR--TSK 533 (615)
T ss_dssp SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCC--SSC
T ss_pred CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCC-CCEEEEcCCCCeEEEeeCCCCcceeEeecCC--CCc
Confidence 00000 112346789999999999 99999999999999999999998874 33 6 789
Q ss_pred eEEEEEeeccC-------CCCCeEEEeCCCEEEEEeCCCC-ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 281 IVDIKWHQSIN-------TERPKLITTDNHIVRIWDPETG-ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 281 I~sl~fsp~~~-------~~~~ll~ss~Dg~V~IWd~~tg-~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
|++++|+|... ++..+++++.|+.|+|||+.++ +++..+..|...|++++|+|++. |++++.|+.|.+|.+
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 99999997110 3455566668999999999997 78999999999999999999999 999999999999987
Q ss_pred C
Q 005325 353 P 353 (702)
Q Consensus 353 p 353 (702)
.
T Consensus 613 ~ 613 (615)
T 1pgu_A 613 V 613 (615)
T ss_dssp C
T ss_pred e
Confidence 5
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=5.1e-29 Score=266.50 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=207.9
Q ss_pred CCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCceeEEEECCCCCEEEEEEec
Q 005325 5 GGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETATTKIRETPDGEFLIVSGIY 83 (702)
Q Consensus 5 dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~v~~i~~SpDG~~llatGs~ 83 (702)
||. ++++++.++.|+||++..+ ...... . ..+.. ..|...|++++|+|++.+ +++|+.
T Consensus 38 d~~-~l~sgs~D~~v~iWd~~~~-~~~~~~---------------~---~~~~~l~~h~~~V~~~~~~~~~~~-l~s~s~ 96 (343)
T 2xzm_R 38 DSP-VLISGSRDKTVMIWKLYEE-EQNGYF---------------G---IPHKALTGHNHFVSDLALSQENCF-AISSSW 96 (343)
T ss_dssp CCC-EEEEEETTSCEEEEEECSS-CCSSBS---------------E---EEEEEECCCSSCEEEEEECSSTTE-EEEEET
T ss_pred CCC-EEEEEcCCCEEEEEECCcC-Cccccc---------------c---cccchhccCCCceEEEEECCCCCE-EEEEcC
Confidence 555 4688888999999999876 221100 0 11111 247889999999999999 899999
Q ss_pred CCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC-----CCccceEEecCC
Q 005325 84 PPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP-----RMGRDMAYNSWS 156 (702)
Q Consensus 84 dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~-----~~~~~l~~~~~s 156 (702)
|+.|++||+.+.. ..+..|... +..+.++|++.+|++++.|++|++|++.+........ ....++.+.+..
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSE--VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSC--EEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCc--EEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence 9999999998743 356667444 6777789999999999999999999987544332221 112366666654
Q ss_pred ----------CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC-CcceeEEe
Q 005325 157 ----------CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM-RSSAARIN 225 (702)
Q Consensus 157 ----------~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t-~~~v~~l~ 225 (702)
..+++++.++.|++|| ..+.....+..|...|++++|+|++.+|++|+.||+|++||++. ......+.
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 253 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE
T ss_pred ccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec
Confidence 4588899999999999 45677788899999999999999999999999999999999954 44444444
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE---Ee-----------eccCCCCeEEEEEeeccC
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR---VK-----------DHMFDSPIVDIKWHQSIN 291 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~---~~-----------~h~~~~~I~sl~fsp~~~ 291 (702)
.. ..|++++|+|+ +.+|++| .|+.|+|||+.+..... +. .| ...|++++|+|
T Consensus 254 ~~-------~~v~~v~~sp~-~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp--- 319 (343)
T 2xzm_R 254 AG-------STINQIAFNPK-LQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK--NPQCTSLAWNA--- 319 (343)
T ss_dssp CS-------SCEEEEEECSS-SCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS--CCCEEEEEECS---
T ss_pred CC-------CcEEEEEECCC-CCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC--CCceEEEEECC---
Confidence 33 67999999999 8877655 57889999998765432 11 33 67899999998
Q ss_pred CCCCeEEEeCCCEEEEEeCCCC
Q 005325 292 TERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
++..+++++.|++|+||++.++
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEcc
Confidence 5666777789999999998764
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.3e-29 Score=266.74 Aligned_cols=278 Identities=11% Similarity=0.110 Sum_probs=229.8
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK- 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~- 137 (702)
....+.+++|||||++ ++++..++.+.+|...... .....|. ..+..+.+++++.+|++++ |+.|++|+....
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQINTLNHG--EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEEEECCS--SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccceeccCC--CceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 4567899999999999 6666666666666555422 2333443 3366777889999999998 999999998731
Q ss_pred ----eEEEec---CCCccceEEecCCCcEEEEecCCCEEEEECCCCe--EEEEeecCCCCeEEEEEcCCCCEEEEEEcCC
Q 005325 138 ----HYSLRI---PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR--FLSSLNTQSPALNVVSRSKLHGLIACGGEDG 208 (702)
Q Consensus 138 ----~~~~~i---~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~--~~~~l~~h~~~V~~l~~sp~~~llasgs~DG 208 (702)
...+.. .....++.+.+.+..+++++.++.|++||+.+++ ....+..|...|++++|+|++.+|++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 222221 2223377888877779999999999999999887 6677888999999999999999999999999
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
.|++||+++++.+..+..+ ...|++++|+|+ +.+|++++.||.|++||+++++++....+ ..+|.+++|+|
T Consensus 164 ~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~ 234 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGH------TDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCP 234 (337)
T ss_dssp CEEEEETTTTEEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECT
T ss_pred cEEEEeCCCCceeeeeecc------cCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECC
Confidence 9999999999988888877 689999999999 99999999999999999999998887666 67899999998
Q ss_pred ccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 289 SINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 289 ~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++..+++++.++.|++||+.+++.. .+..|...|.+++|+|++.+|++++.++.|.+|.+...
T Consensus 235 ---~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 235 ---TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp ---TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ---CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 4555666678999999999988764 67788999999999999999999999999999998764
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.3e-28 Score=272.30 Aligned_cols=299 Identities=12% Similarity=0.148 Sum_probs=240.1
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEe
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs 82 (702)
.||. ++++++.++.|+||++..+ +.+ ..+ .|...|++++|+ +.+ +++|+
T Consensus 127 ~~g~-~l~sg~~dg~i~vwd~~~~-~~~-------------------------~~~~~h~~~v~~~~~~--~~~-l~s~~ 176 (445)
T 2ovr_B 127 FCGN-RIVSGSDDNTLKVWSAVTG-KCL-------------------------RTLVGHTGGVWSSQMR--DNI-IISGS 176 (445)
T ss_dssp EETT-EEEEEETTSCEEEEETTTC-CEE-------------------------EECCCCSSCEEEEEEE--TTE-EEEEE
T ss_pred EcCC-EEEEEECCCcEEEEECCCC-cEE-------------------------EEEcCCCCCEEEEEec--CCE-EEEEe
Confidence 4554 3677888999999999887 221 112 477889999997 456 89999
Q ss_pred cCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc---ceEEecCCC
Q 005325 83 YPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR---DMAYNSWSC 157 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~---~l~~~~~s~ 157 (702)
.|+.|++||+.+... .+..|. .. +..+.++ +..|++++.|++|.+|+.........+..+.. ++.+ .+.
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~-~~-v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHT-ST-VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCS-SC-EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred CCCeEEEEECCcCcEEEEECCCC-Cc-EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 999999999988443 455553 33 4444444 47899999999999999884322222222222 4444 445
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
.+++++.++.|++||+.+++.+..+..|...|.+++| ++.+|++|+.||.|++||+++++.+..+..+ ...+
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v 322 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH------QSLT 322 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC------CSCE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC------cccE
Confidence 5899999999999999999999999999999999999 6789999999999999999999999998877 6889
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eec-cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDH-MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES 315 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h-~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~ 315 (702)
.++.++ +.+|++|+.||.|++||+++++++.. ..+ .+..+|++++|+ +..+++++.|+.|+|||+.+++.
T Consensus 323 ~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 323 SGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp EEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-----CCEEEEEeCCCeEEEEECCCCce
Confidence 988885 66999999999999999999988774 331 136899999997 45677778899999999999999
Q ss_pred eEEe-----cCCCCceeEEEEEcCCCEEEEEeCCCc----EEEEEcCC
Q 005325 316 MTSI-----EPTAGKINDVCVFKDSGLLLLALDCSQ----IPSYFIPD 354 (702)
Q Consensus 316 l~~i-----~~h~~~I~~v~~~p~~~~l~~a~~d~~----I~~~~ip~ 354 (702)
+..+ ..|.+.|++++|+|++.++++++.|+. |.+|.+..
T Consensus 395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9888 467889999999999999999999997 88887643
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.7e-29 Score=272.43 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=222.1
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS 140 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~ 140 (702)
-.++++.|++ .. +++++.++.|++|++.+... .+... ....+..+.+++++.+|++++.|+.|.+|+.......
T Consensus 94 ~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 94 YYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE
Confidence 3456677775 44 57788999999999988443 22322 2334667778889999999999999999998843333
Q ss_pred EecCCCcc---ceEEecCCCcEEEEecCCCEEEEECC-CCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 141 LRIPRMGR---DMAYNSWSCDLLCAASSPELYRINLE-QGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 141 ~~i~~~~~---~l~~~~~s~~llv~s~d~~V~vwdl~-~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
..+..+.. ++.+ ....+++++.++.|++||+. .+..+..+..|...|++++|+|++.+|++|+.||.|++||++
T Consensus 170 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 170 RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 33333322 4444 23458888999999999999 567788899999999999999999999999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS--STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs--~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
++..+..+..+ ...|++++|+|++..++++|+ .||.|++||+++++++....+ ..+|.+++|+| ++.
T Consensus 248 ~~~~~~~~~~~------~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~---~~~ 316 (401)
T 4aez_A 248 SSIPKFTKTNH------NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSP---HSK 316 (401)
T ss_dssp CSSEEEEECCC------SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECS---SSS
T ss_pred CCCccEEecCC------cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECC---CCC
Confidence 99988888777 689999999998456777765 799999999999998886666 57899999998 444
Q ss_pred CeEEEe--CCCEEEEEeCCCCceeE--EecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 295 PKLITT--DNHIVRIWDPETGESMT--SIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 295 ~ll~ss--~Dg~V~IWd~~tg~~l~--~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
.+++++ .|+.|+|||+.++.... .+..|...|++++|+|++.+|++++.|+.|.+|.+..-
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 455533 69999999999865544 46789999999999999999999999999999998653
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-29 Score=264.67 Aligned_cols=270 Identities=14% Similarity=0.153 Sum_probs=199.6
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
++++++.++.|+||++..+ .. ..+..+..-.|...|++++|+|++++ ||+|+.|+.|+
T Consensus 26 ~las~~~D~~i~lw~~~~~-~~--------------------~~~~~~~~~~h~~~v~~v~~sp~~~~-las~s~D~~v~ 83 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD-DF--------------------TLIDVLDETAHKKAIRSVAWRPHTSL-LAAGSFDSTVS 83 (330)
T ss_dssp EEEEEESSSCEEEEECSSS-CC--------------------EEEEEECTTCCCSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred EEEEEcCCCEEEEEEecCC-Ce--------------------EEEEEEecCCccCCEEEEEECCCCCE-EEEEeCCCcEE
Confidence 4677788999999999775 10 00111212237889999999999998 89999999999
Q ss_pred EEEcCC---------ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--Cc-eEE-EecCC---CccceEE
Q 005325 89 VYELRQ---------LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GK-HYS-LRIPR---MGRDMAY 152 (702)
Q Consensus 89 vwdl~~---------~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~-~~~-~~i~~---~~~~l~~ 152 (702)
||++.. ....+..|... +..+.++|++.+|++++.|++|++|+.. +. ... ..+.. ...++.+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENE--VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEC-------CCCEEEEEEC----C--EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999843 12345566444 6777789999999999999999999984 21 111 12222 2337888
Q ss_pred ecCCCcEEEEecCCCEEEEECCCC--eEEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEECCCC--------cc
Q 005325 153 NSWSCDLLCAASSPELYRINLEQG--RFLSSLNTQSPALNVVSRSKL--HGLIACGGEDGAVECFDMRMR--------SS 220 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~V~iWD~~t~--------~~ 220 (702)
+|....|++++.|+.|++||+.++ .++..+.+|...|.+++|+|+ +.+|++|+.|++|++||+..+ .+
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 888777999999999999998877 678889999999999999998 679999999999999999754 22
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE--EEE--eeccCCC-CeEEEEEeeccCCCCC
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP--IRV--KDHMFDS-PIVDIKWHQSINTERP 295 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~--l~~--~~h~~~~-~I~sl~fsp~~~~~~~ 295 (702)
+..+.. .|...|++|+|+++ + +|++|+.||.|+|||+.++.. +.. ..| .. .|.+++|+|.. ++..
T Consensus 242 ~~~~~~-----~h~~~v~~v~~s~~-~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~-~~~~ 311 (330)
T 2hes_X 242 EAILPD-----VHKRQVYNVAWGFN-G-LIASVGADGVLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELN-GKTI 311 (330)
T ss_dssp EEECCS-----CCSSCEEEEEECTT-S-CEEEEETTSCEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC------CC
T ss_pred eeeccc-----ccccceEEEEEcCC-C-EEEEEeCCCEEEEEEcCCCceEEEecccccc--ccceEEEEEEecCC-CceE
Confidence 233322 14789999999976 4 899999999999999988742 322 334 44 89999999711 2345
Q ss_pred eEEEeCCCEEEEEeCCC
Q 005325 296 KLITTDNHIVRIWDPET 312 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~t 312 (702)
+++++.|++|+|||+.+
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 66677899999999864
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=278.91 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=212.7
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce-------------EEEeeecCC----------ceEEEEEEcC
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS-------------LKFERHLDS----------EIINFEVLAD 115 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~-------------~~~~~h~~~----------~vv~~~~ls~ 115 (702)
+.....|++++|+|+|++ ||+|+.|+.|+||++.+.. ..+..|... ..+..+.+++
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 345689999999999999 8999999999999998632 355566411 2255566777
Q ss_pred CC--CEEEEEECCCeEEEEecCCceEE----------------------------------------Ee---cCCCccce
Q 005325 116 DY--SKLAFLCADRSISLHAKYGKHYS----------------------------------------LR---IPRMGRDM 150 (702)
Q Consensus 116 dg--~~Las~s~D~~I~iw~~~g~~~~----------------------------------------~~---i~~~~~~l 150 (702)
++ ..|++++.|++|++|+....... .. ......++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 77 79999999999999987631110 10 11223377
Q ss_pred EEecCCCcEEEEecCCCEEEEECCC-CeEEE-------EeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcc-
Q 005325 151 AYNSWSCDLLCAASSPELYRINLEQ-GRFLS-------SLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSS- 220 (702)
Q Consensus 151 ~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~-------~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~- 220 (702)
.+++.+..++++ .++.|++||+.+ +..+. .+..|...|++++|+|++ .+|++|+.||+|++||++++..
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 888866666666 899999999994 44444 356899999999999998 9999999999999999999886
Q ss_pred ---eeEEecccCC------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-CeEEE-EeeccCCC----------
Q 005325 221 ---AARINAVAPA------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-SYPIR-VKDHMFDS---------- 279 (702)
Q Consensus 221 ---v~~l~~~~~~------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-~~~l~-~~~h~~~~---------- 279 (702)
+..+..+... ..|...|++|+|+|+ +.+|++++. |.|+|||+++ ++++. +..|..-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 6777776100 001138999999999 999999999 9999999997 77665 55552111
Q ss_pred ---CeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---------------------------------CC
Q 005325 280 ---PIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP---------------------------------TA 323 (702)
Q Consensus 280 ---~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---------------------------------h~ 323 (702)
.+..++|+| ++..+++++.|+.|+|||+.+++.+. +.. +.
T Consensus 341 ~i~~~~~~~~s~---~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 341 CIFDKFECCWNG---SDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp GGGCCCCEEECT---TSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred ccccceEEEECC---CCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccC
Confidence 134599998 45556666789999999999988763 222 24
Q ss_pred CceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 324 GKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 324 ~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
..|.+++|+|++.+|++++.++ +++|+
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred CceeEEEECCCCCEEEEEecce-eeeec
Confidence 5788999999999999888775 66665
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=7.2e-29 Score=259.97 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=193.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcC--CCCEEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----LSLKFERHLDSEIINFEVLAD--DYSKLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~--dg~~Las~s~D~~I~iw~ 133 (702)
.|...|++++|+|+|++ ||+|+.|+.|+||++.. ....+..|... +..+.+++ ++..|++++.|++|++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~--V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSC--EEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCC--eEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 57889999999999999 99999999999999964 33467777443 44444543 478999999999999876
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCC--eEEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCe
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG--RFLSSLNTQSPALNVVSRSKL--HGLIACGGEDGA 209 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~ 209 (702)
.. ++ ..+..+..|...|++++|+|+ +.+|++|+.||+
T Consensus 84 ~~---------------------------------------~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 84 EE---------------------------------------NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp BS---------------------------------------SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred cC---------------------------------------CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 54 22 123455678899999999998 789999999999
Q ss_pred EEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCC------------CCEEEEEeCCCeEEEEEcCCCe----EEE
Q 005325 210 VECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNG------------GFLMGVGSSTGKVLIYDLRSSY----PIR 271 (702)
Q Consensus 210 V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~------------g~~LasGs~DG~V~lwDlrs~~----~l~ 271 (702)
|++||+++... ...+..| ...|++++|+|+. +.+|++|+.|++|+|||++++. +..
T Consensus 125 v~~wd~~~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~ 198 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAH------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECC------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceeeeeeecc------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence 99999987642 3455555 6899999999961 4689999999999999998765 332
Q ss_pred -EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc---eeEEe--cCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 272 -VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE---SMTSI--EPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 272 -~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~---~l~~i--~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
+..| ..+|.+|+|+|....+..+++++.|++|+|||+.++. ....+ ..|...|.+++|+|++.+|++++.|+
T Consensus 199 ~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 199 TLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 4566 7899999999811002345566689999999998743 12233 46788999999999999999999999
Q ss_pred cEEEEEcCCCC
Q 005325 346 QIPSYFIPDLG 356 (702)
Q Consensus 346 ~I~~~~ip~lg 356 (702)
.|.+|....-|
T Consensus 277 ~v~lw~~~~~g 287 (297)
T 2pm7_B 277 KVTLWKENLEG 287 (297)
T ss_dssp CEEEEEECTTS
T ss_pred cEEEEEECCCC
Confidence 99999876443
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.3e-29 Score=272.30 Aligned_cols=276 Identities=10% Similarity=0.056 Sum_probs=208.3
Q ss_pred CCceeEEEECCCCCEEEEEEecC-------CcEEEEEcCCce------------EEEeeecCCceEEEEEEcCCCCEEEE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYP-------PQVKVYELRQLS------------LKFERHLDSEIINFEVLADDYSKLAF 122 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~d-------g~I~vwdl~~~~------------~~~~~h~~~~vv~~~~ls~dg~~Las 122 (702)
.-+|.|++|+|||++ ||+|+.+ +.|++|++.... ..+..|.+. +.+ +++++..+++
T Consensus 14 g~PV~sv~fs~dg~~-l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~-v~s---~~~~~~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTL-LVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDS-PTA---IDASKGIILV 88 (365)
T ss_dssp SSCEEEEEEEETTEE-EEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCC-CCE---EEEETTEEEE
T ss_pred CCCEEEEEEeCCCcE-EEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCc-eEE---EEeCCCEEEE
Confidence 345999999999998 7887643 359999987511 123334332 222 3344566666
Q ss_pred EE-----------CCCeEEEEecCC--ceEE-E---ecC------CCccceEEecCCCcEEEEe--cCCCEEEEECCCCe
Q 005325 123 LC-----------ADRSISLHAKYG--KHYS-L---RIP------RMGRDMAYNSWSCDLLCAA--SSPELYRINLEQGR 177 (702)
Q Consensus 123 ~s-----------~D~~I~iw~~~g--~~~~-~---~i~------~~~~~l~~~~~s~~llv~s--~d~~V~vwdl~~g~ 177 (702)
++ .|++|++|+... .+.. . ... ...+.++|.|.+..+++++ .++.|++||+.+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 54 467899997652 1111 1 111 1234678888877777665 46789999999999
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 005325 178 FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 178 ~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG 257 (702)
.+..+. |...|++|+|+|++.+|++++.+ .+.+|+..++..+...... .|...|++++|+|+ +.++++++.++
T Consensus 169 ~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~fspd-g~~l~~~s~d~ 241 (365)
T 4h5i_A 169 EKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF----DKNWSLSKINFIAD-DTVLIAASLKK 241 (365)
T ss_dssp EEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC----CTTEEEEEEEEEET-TEEEEEEEESS
T ss_pred EEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC----CCCCCEEEEEEcCC-CCEEEEEecCC
Confidence 998886 66789999999999999999864 5677777777665544332 24688999999999 99999999887
Q ss_pred ----eEEEEEcCCCeEEE-----EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe-cCCCCcee
Q 005325 258 ----KVLIYDLRSSYPIR-----VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI-EPTAGKIN 327 (702)
Q Consensus 258 ----~V~lwDlrs~~~l~-----~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i-~~h~~~I~ 327 (702)
.|.+||+....... +..| ..+|++++|+| ++..+++++.|++|+|||+.+++++..+ .+|...|+
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~Sp---dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNR--FKGITSMDVDM---KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESS--CSCEEEEEECT---TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred cceeEEeecccccceecceeeeeecCC--CCCeEeEEECC---CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 68899998765422 3445 67999999998 4445555668999999999999999885 78999999
Q ss_pred EEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 328 DVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 328 ~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|+|+|++.+|++++.|+.|++|.||.
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999985
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=7e-29 Score=283.93 Aligned_cols=308 Identities=11% Similarity=0.045 Sum_probs=250.8
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCc-eeEEEECC--CCCEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETA-TTKIRETP--DGEFLI 78 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~-v~~i~~Sp--DG~~ll 78 (702)
||||. .|.+..++.|.||++..+ ...+ +.+.. ..|... |++++|+| ||++ |
T Consensus 27 spdg~--~l~~~~~~~v~v~~~~~~-~~~~---------------------~~~~~~~~h~~~~v~~~~~sp~~~~~~-l 81 (615)
T 1pgu_A 27 DPTTN--AIAYPCGKSAFVRCLDDG-DSKV---------------------PPVVQFTGHGSSVVTTVKFSPIKGSQY-L 81 (615)
T ss_dssp ETTTT--EEEEEETTEEEEEECCSS-CCSS---------------------CSEEEECTTTTSCEEEEEECSSTTCCE-E
T ss_pred CCCCC--EEEEecCCeEEEEECCCC-CCcc---------------------ccceEEecCCCceEEEEEECcCCCCCE-E
Confidence 68888 455556889999999865 1110 01111 246788 99999999 9999 8
Q ss_pred EEEecCCcEEEEEcCCc----------eEEEeeecCCceEEEEEEcCCCCEEEEEECC----CeEEEEecCCceEEEecC
Q 005325 79 VSGIYPPQVKVYELRQL----------SLKFERHLDSEIINFEVLADDYSKLAFLCAD----RSISLHAKYGKHYSLRIP 144 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~----------~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D----~~I~iw~~~g~~~~~~i~ 144 (702)
|+|+.|+.|+|||+.+. ...+..|.. .+..+.+++++.+|++++.+ +.|.+|+.......+..+
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 159 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH 159 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS--CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchhhcccc--cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecC
Confidence 99999999999999632 223444533 37777789999999999988 699999854433333222
Q ss_pred C-CccceEEecCCC-cEEEEecCCCEEEEECCCCeEEEEeecCCC---CeEEEEEcCC-CCEEEEEEcCCeEEEEECCCC
Q 005325 145 R-MGRDMAYNSWSC-DLLCAASSPELYRINLEQGRFLSSLNTQSP---ALNVVSRSKL-HGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 145 ~-~~~~l~~~~~s~-~llv~s~d~~V~vwdl~~g~~~~~l~~h~~---~V~~l~~sp~-~~llasgs~DG~V~iWD~~t~ 218 (702)
. ...++.+.+... .+++++.++.|++||+.+++.+..+..|.. .|++++|+|+ +.+|++|+.||.|++||+.++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 1 223788888877 588899999999999999999999999999 9999999999 999999999999999999999
Q ss_pred cceeEE-e---cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecc---CCCCeEEEEEeeccC
Q 005325 219 SSAARI-N---AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM---FDSPIVDIKWHQSIN 291 (702)
Q Consensus 219 ~~v~~l-~---~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~---~~~~I~sl~fsp~~~ 291 (702)
+.+..+ . .+ ...|++++|+ + +.+|++++.||.|++||+++++++...... ....+.++.|..
T Consensus 240 ~~~~~~~~~~~~~------~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 308 (615)
T 1pgu_A 240 EFLKYIEDDQEPV------QGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--- 308 (615)
T ss_dssp CEEEECCBTTBCC------CSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE---
T ss_pred CEeEEeccccccc------CCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCC---
Confidence 988888 4 44 6899999999 7 999999999999999999999887743321 135788888863
Q ss_pred CCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 292 TERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+..+++++.++.|++||+.+++++..+..|...|++++| |+ +++++.++.|.+|.+.
T Consensus 309 -~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 309 -NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred -CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 777778889999999999999999999999999999999 88 9999999999999765
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=8e-29 Score=294.15 Aligned_cols=283 Identities=10% Similarity=0.097 Sum_probs=237.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG- 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g- 136 (702)
.|+..|++++|||||++ ||+|+.+|.|+|||+.+... .+..|... +..+.++|++.+|++++.|+.|.+|+...
T Consensus 11 ~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred cCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEEEecCCCc--EEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 37899999999999999 89999999999999988433 45555333 77777889999999999999999999873
Q ss_pred ceEE-Ee-cCCCccceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEE
Q 005325 137 KHYS-LR-IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVEC 212 (702)
Q Consensus 137 ~~~~-~~-i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~i 212 (702)
.... +. ......++.+++.+..+++++.++.|.+||+.++ .....+..|...|.+++|+| ++.+|++|+.||+|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3322 22 1223348888888888999999999999999987 77788899999999999999 7899999999999999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcC--CCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeec
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDS--NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp--d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~ 289 (702)
||+.++.....+..+ +...|++++|+| + +.+|++|+.||.|++||++++.++. +..| ..+|++++|+|
T Consensus 168 wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~- 238 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTG-----QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHP- 238 (814)
T ss_dssp EETTCSSCSEEEECC-----CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECS-
T ss_pred EECCCCcceeEEecC-----CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcC-
Confidence 999998888887766 247899999999 8 9999999999999999999998877 4556 67999999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCE-EEEEeCCCcEEEEEcCCCC
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGL-LLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~-l~~a~~d~~I~~~~ip~lg 356 (702)
++..+++++.|+.|+|||+.+++.+..+..|...|.+++|+|++.. +++++.++.+.+|.+....
T Consensus 239 --~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 239 --TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp --SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred --CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 4445666668999999999999999999999999999999998763 3555566778888776543
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.9e-29 Score=266.99 Aligned_cols=276 Identities=11% Similarity=0.097 Sum_probs=221.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce----E-EEeeecCCceEEEEEEcCCCC-EEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS----L-KFERHLDSEIINFEVLADDYS-KLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~----~-~~~~h~~~~vv~~~~ls~dg~-~Las~s~D~~I~iw~ 133 (702)
.|...|++++|+|++.+ |++|+.|+.|+||++.... . .+..| ... +..+.+++++. .|++++.|+.|.+|+
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHP-LLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSC-EEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccceeeeec-CCc-eEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 57889999999999999 8999999999999998743 3 33444 333 56666778889 999999999999999
Q ss_pred c-CC-ceEEEec--C-CCccceEEecCCCcEEEEecCCCEEEEECCC---------CeEEEEeecCCCCeEEEEEcCCCC
Q 005325 134 K-YG-KHYSLRI--P-RMGRDMAYNSWSCDLLCAASSPELYRINLEQ---------GRFLSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 134 ~-~g-~~~~~~i--~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~---------g~~~~~l~~h~~~V~~l~~sp~~~ 199 (702)
. .. ....+.. . ....++.+.+ ...+++++.++.|++||+.+ ++.+..+. |...|.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 8 64 3333322 1 1223788888 77789999999999999987 77676666 88899999999887
Q ss_pred EEEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCC------eEEE
Q 005325 200 LIACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSS------YPIR 271 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~------~~l~ 271 (702)
|++|+.|+.|++||+++ +......... .+...|++++|+| + +.+|++|+.||.|+|||+... .++.
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred -EEEEeCCCeEEEEECCccccccceeeec----CCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 99999999999999998 5532221111 1368999999999 9 999999999999999999876 5444
Q ss_pred -EeeccC-------CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC-CCceeEEEEEcCCCEEEEEe
Q 005325 272 -VKDHMF-------DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT-AGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 272 -~~~h~~-------~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h-~~~I~~v~~~p~~~~l~~a~ 342 (702)
+..|.. ..+|++++|+| ++..+++++.|+.|+|||+.+++++..+..| ...|++++ |++.+|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSP---RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECT---TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred eeecccccccccccceeEEEEEEcC---CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 555521 34999999998 4566777778999999999999999999998 99999998 9999999999
Q ss_pred CCCc-EEEEEc
Q 005325 343 DCSQ-IPSYFI 352 (702)
Q Consensus 343 ~d~~-I~~~~i 352 (702)
.|+. ...|..
T Consensus 312 ~Dg~~~~~~~~ 322 (342)
T 1yfq_A 312 SDDTFKTNAAI 322 (342)
T ss_dssp ECTHHHHCSSS
T ss_pred cCCcccccccc
Confidence 9997 544443
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.3e-30 Score=278.91 Aligned_cols=275 Identities=13% Similarity=0.105 Sum_probs=207.0
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--eE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--SL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
+...|++++|+|||++ ||+|+.|+.|+||++.+. .. .+..|... +..+.+++++.+|++++.|++|++|+...
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHARTFSDHDKI--VTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECCCBCCCSSC--EEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEEEEecCCce--EEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4578999999999998 899999999999999874 22 44455433 67777899999999999999999999874
Q ss_pred ce---EEEecCC---CccceEEecCCCcEEEEecCCCEEEEECCCCe---EEEEeec-CCCCeEEEEEcCCCCEEEEEEc
Q 005325 137 KH---YSLRIPR---MGRDMAYNSWSCDLLCAASSPELYRINLEQGR---FLSSLNT-QSPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 137 ~~---~~~~i~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~---~~~~l~~-h~~~V~~l~~sp~~~llasgs~ 206 (702)
.. ....+.. ...++.+.+....+++++.++.|++||+.++. ....+.. |...|++++|+|++.+|++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 32 2222222 22367777766779999999999999999887 3677777 9999999999999999999999
Q ss_pred CCeEEEEECCCC------------------cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 207 DGAVECFDMRMR------------------SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 207 DG~V~iWD~~t~------------------~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
||+|++||+.+. .++..+ .|...|++++|+|+ +.+|++|+.||.|+|||++++.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTT
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCC
Confidence 999999999632 233333 34789999999999 9999999999999999999877
Q ss_pred E----EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc-----------------------------
Q 005325 269 P----IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE----------------------------- 314 (702)
Q Consensus 269 ~----l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~----------------------------- 314 (702)
. +. +..| ..+|.+++|+| ++.+|+++.++.+.+|+...+.
T Consensus 239 ~~~~~~~~~~~~--~~~v~~~~~s~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 239 QPPRALITVKLS--QLPLRSLLWAN----ESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp SCEEECCCEECS--SSCEEEEEEEE----TTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred CcceeeEeecCC--CCceEEEEEcC----CCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccc
Confidence 5 33 5666 67999999998 5666666655555577765211
Q ss_pred ----------eeEE-------------ecCCCCceeEEEEEcCCC----EEEEEeCCCcEEEEEc
Q 005325 315 ----------SMTS-------------IEPTAGKINDVCVFKDSG----LLLLALDCSQIPSYFI 352 (702)
Q Consensus 315 ----------~l~~-------------i~~h~~~I~~v~~~p~~~----~l~~a~~d~~I~~~~i 352 (702)
.+.. ...|...|+++++.+..+ .|++++.|+.|.+|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 113899999999887543 5999999999999964
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.7e-28 Score=269.84 Aligned_cols=277 Identities=12% Similarity=0.158 Sum_probs=211.7
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+|.+..+++|+||++.+| +. +.++.--.+...|+||+|+|||++ ||+|+.|+.|+|
T Consensus 118 ~lAvgld~tV~lWd~~tg-~~----------------------~~~~~~~~~~~~V~sv~fspdg~~-lasgs~Dg~v~i 173 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG-DI----------------------LQLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQL 173 (420)
T ss_dssp EEEEEETTEEEEEETTTC-CE----------------------EEEEECCSTTCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred EEEEEeCCEEEEEECCCC-CE----------------------EEEEEecCCCCcEEEEEECCCCCE-EEEEECCCeEEE
Confidence 688888999999999988 21 123333356778999999999999 899999999999
Q ss_pred EEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-EecCC---CccceEEecCCCcEEEEe
Q 005325 90 YELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRIPR---MGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 90 wdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i~~---~~~~l~~~~~s~~llv~s 163 (702)
||+.+... .+..|. ..+.. ++.++..|++++.|+.+.+|+....... ..+.. ....+.+.+.+..+++++
T Consensus 174 Wd~~~~~~~~~~~~h~-~~v~~---~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHS-ARVGS---LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EETTTTEEEEEECCCS-SCEEE---EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEcCCCcEEEEEeCCC-CceEE---EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee
Confidence 99988443 455553 32332 3445689999999999999998742222 22222 222666777777799999
Q ss_pred cCCCEEEEECCCCe----EEEEeecCCCCeEEEEEcCCC-CEEEEE--EcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 164 SSPELYRINLEQGR----FLSSLNTQSPALNVVSRSKLH-GLIACG--GEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 164 ~d~~V~vwdl~~g~----~~~~l~~h~~~V~~l~~sp~~-~llasg--s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
.++.|++|+..+++ .+..+..|...|.+++|+|.+ .+++++ +.|++|++||+.++.++..+..+ ..
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-------~~ 322 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------SQ 322 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-------SC
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-------cc
Confidence 99999999998775 345677889999999999976 666654 47999999999999999998887 78
Q ss_pred eEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 237 VTALEFDSNGGFLMGVGS--STGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 237 Vtslafspd~g~~LasGs--~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
|.++.|+|+ +..|++++ .||.|+|||+.+++++. +.+| ..+|++|+|+| ++..+++++.|++|+|||+...
T Consensus 323 v~~~~~~~~-~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~sp---dg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 323 VCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSP---DGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECT---TSSCEEEEETTTEEEEECCSCS
T ss_pred eeeeeecCC-CCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcC---CCCEEEEEecCCeEEEEECCCC
Confidence 999999999 88887765 79999999999999887 6677 68999999998 5666777778999999999887
Q ss_pred ceeEEecCCCCcee
Q 005325 314 ESMTSIEPTAGKIN 327 (702)
Q Consensus 314 ~~l~~i~~h~~~I~ 327 (702)
.+....+.+...+.
T Consensus 397 ~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 397 DPARRREREKASAA 410 (420)
T ss_dssp SCC-----------
T ss_pred CccchhhhccCCcc
Confidence 76666555444433
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.7e-28 Score=305.39 Aligned_cols=313 Identities=12% Similarity=0.092 Sum_probs=251.2
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llat 80 (702)
.|+||.- +++++.++.|+||++..+ .. +..+ .|...|++++|+|||++ ||+
T Consensus 623 ~s~~~~~-l~s~~~d~~i~vw~~~~~-~~-------------------------~~~~~~h~~~v~~~~~s~~~~~-l~s 674 (1249)
T 3sfz_A 623 FSQDGQR-IASCGADKTLQVFKAETG-EK-------------------------LLDIKAHEDEVLCCAFSSDDSY-IAT 674 (1249)
T ss_dssp ECTTSSE-EEEEETTSCEEEEETTTC-CE-------------------------EEEECCCSSCEEEEEECTTSSE-EEE
T ss_pred ECCCCCE-EEEEeCCCeEEEEECCCC-CE-------------------------EEEeccCCCCEEEEEEecCCCE-EEE
Confidence 3678773 566788899999999888 21 1122 47889999999999999 899
Q ss_pred EecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcC--CCCEEEEEECCCeEEEEecCCceEEEecCC---CccceEEe
Q 005325 81 GIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLAD--DYSKLAFLCADRSISLHAKYGKHYSLRIPR---MGRDMAYN 153 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~--dg~~Las~s~D~~I~iw~~~g~~~~~~i~~---~~~~l~~~ 153 (702)
|+.|+.|+|||+.+... .+..|... +..+.+++ ++..+++++.|+.|.+|+.........+.. ...++.+.
T Consensus 675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 675 CSADKKVKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred EeCCCeEEEEECCCCceEEEEcCCCCc--EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence 99999999999988443 55556333 66666777 556889999999999999884333322222 22377888
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEee--------------------------------------------------
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLN-------------------------------------------------- 183 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~-------------------------------------------------- 183 (702)
+.+..+++++.++.|.+||+.++.....+.
T Consensus 753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 877779999999999999988776544332
Q ss_pred -----cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 005325 184 -----TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK 258 (702)
Q Consensus 184 -----~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~ 258 (702)
.|...|.+++|+|++.++++|+.||.|++||+.++..+..+..| ...|++++|+|+ +.+|++++.||.
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h------~~~v~~v~~spd-g~~l~s~s~dg~ 905 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH------LSWVHGVMFSPD-GSSFLTASDDQT 905 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC------SSCEEEEEECTT-SSEEEEEETTSC
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC------ccceEEEEECCC-CCEEEEEeCCCe
Confidence 56778999999999999999999999999999999999888877 789999999999 999999999999
Q ss_pred EEEEEcCCCeE-----------------------------EE-Eee------ccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 259 VLIYDLRSSYP-----------------------------IR-VKD------HMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 259 V~lwDlrs~~~-----------------------------l~-~~~------h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
|++||+.+... +. ... .....+|.+++|+| ++..+++++.+
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~~g~~~ 982 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP---HLEYVAFGDED 982 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT---TSSEEEEEETT
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC---CCCEEEEEcCC
Confidence 99999753100 00 000 01245799999998 45556666789
Q ss_pred CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 303 HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 303 g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.|++||+.++..+..+..|...|++++|+|++.+|++++.++.|.+|.+..
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999998765
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.6e-28 Score=287.91 Aligned_cols=274 Identities=16% Similarity=0.218 Sum_probs=215.1
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
++++..++++++.++.|+||++... ..... .....-..|...|++++|+|+|++ |++|+
T Consensus 391 ~~~~~~~l~s~s~D~~i~~W~~~~~-~~~~~-------------------~~~~~~~~h~~~v~~v~~s~~g~~-l~sgs 449 (694)
T 3dm0_A 391 PIDNADIIVSASRDKSIILWKLTKD-DKAYG-------------------VAQRRLTGHSHFVEDVVLSSDGQF-ALSGS 449 (694)
T ss_dssp CTTCCSEEEEEETTSEEEEEECCCS-TTCSC-------------------EEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEEccCC-Ccccc-------------------cccceecCCCCcEEEEEECCCCCE-EEEEe
Confidence 4677667788899999999999876 21100 000111257889999999999999 89999
Q ss_pred cCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC--C----CccceEEec
Q 005325 83 YPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP--R----MGRDMAYNS 154 (702)
Q Consensus 83 ~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~--~----~~~~l~~~~ 154 (702)
.|+.|+|||+.+.. ..+..|... +..+.+++++..|++++.|++|++|+..+........ . ...++.+++
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKD--VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSC--EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred CCCcEEEEECCCCcceeEEeCCCCC--EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 99999999998843 356667544 6777789999999999999999999987544332211 1 123677777
Q ss_pred CCC--cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCC
Q 005325 155 WSC--DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 155 ~s~--~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
... .+++++.++.|++||+.++++...+.+|...|++|+|+|++.+|++|+.||+|++||+++++.+..+..+
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~----- 602 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN----- 602 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-----
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-----
Confidence 653 4888999999999999999999999999999999999999999999999999999999999888777655
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eecc-----------------CCCCeEEEEEeeccCCCC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDHM-----------------FDSPIVDIKWHQSINTER 294 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h~-----------------~~~~I~sl~fsp~~~~~~ 294 (702)
..|++++|+|+ +.+|++++ ++.|+|||++++..+.. ..+. ....|++++|+| ++.
T Consensus 603 --~~v~~~~~sp~-~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp---dg~ 675 (694)
T 3dm0_A 603 --SVIHALCFSPN-RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA---DGS 675 (694)
T ss_dssp --SCEEEEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT---TSS
T ss_pred --CcEEEEEEcCC-CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC---CCC
Confidence 78999999999 88777765 56699999999887652 2110 012478999998 555
Q ss_pred CeEEEeCCCEEEEEeCC
Q 005325 295 PKLITTDNHIVRIWDPE 311 (702)
Q Consensus 295 ~ll~ss~Dg~V~IWd~~ 311 (702)
.+++++.|++|+||++.
T Consensus 676 ~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 676 TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred EEEEEcCCCeEEEEecc
Confidence 66667789999999985
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.6e-28 Score=305.59 Aligned_cols=318 Identities=13% Similarity=0.127 Sum_probs=256.5
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCC-EEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGE-FLIVS 80 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~-~llat 80 (702)
|+||.. +++++.++.|+||++..+ +.+ ..+ .|...|++++|+|++. .++++
T Consensus 666 s~~~~~-l~s~~~d~~v~vwd~~~~-~~~-------------------------~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 666 SSDDSY-IATCSADKKVKIWDSATG-KLV-------------------------HTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp CTTSSE-EEEEETTSEEEEEETTTC-CEE-------------------------EEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred ecCCCE-EEEEeCCCeEEEEECCCC-ceE-------------------------EEEcCCCCcEEEEEEecCCCceEEEE
Confidence 678763 567778888999999887 221 112 4678899999999643 34899
Q ss_pred EecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE--EEec-------------
Q 005325 81 GIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY--SLRI------------- 143 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~--~~~i------------- 143 (702)
|+.|+.|++||+.+... .+..|... +..+.++|++..|++++.|++|++|+...... .+..
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSC--EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred EeCCCeEEEEECCCcchhheecCCCCC--EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 99999999999988443 45556444 77777899999999999999999998752111 1100
Q ss_pred -------------------------------------------CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE
Q 005325 144 -------------------------------------------PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS 180 (702)
Q Consensus 144 -------------------------------------------~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~ 180 (702)
.....++.+.+.+..+++++.++.|.+||+.++..+.
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~ 876 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence 0112256677777778999999999999999999999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-----------------------------------------
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS----------------------------------------- 219 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~----------------------------------------- 219 (702)
.+.+|...|++++|+|++.+|++++.||+|++||+.+..
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 999999999999999999999999999999999964210
Q ss_pred ---------------------------ceeEEeccc-----CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 220 ---------------------------SAARINAVA-----PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 220 ---------------------------~v~~l~~~~-----~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
.+..+.... ....|...|++++|+|+ |.+|++++.||.|++||+.++
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTT
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCC
Confidence 000000000 01346789999999999 999999999999999999999
Q ss_pred eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 268 YPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 268 ~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
..+.+..| ..+|.+++|+| ++.+++++.|+.|++||+.+++++..+..|...|++++|+|++.+|++++.++.|
T Consensus 1036 ~~~~~~~~--~~~v~~~~~~~----~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A 1036 DYVFLQAH--QETVKDFRLLQ----DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109 (1249)
T ss_dssp EEECCBCC--SSCEEEEEECS----SSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC
T ss_pred ceEEEecC--CCcEEEEEEcC----CCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 98877777 68999999997 7788888999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 005325 348 PSYFIPDLG 356 (702)
Q Consensus 348 ~~~~ip~lg 356 (702)
.+|.+....
T Consensus 1110 ~iwd~~~~~ 1118 (1249)
T 3sfz_A 1110 KIWSFDLLS 1118 (1249)
T ss_dssp CEECSSSSS
T ss_pred EEEECCCcc
Confidence 999886543
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=4.5e-28 Score=287.72 Aligned_cols=309 Identities=13% Similarity=0.071 Sum_probs=244.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
||||.- ++.++.++.|+||++..+ . +++.+ .++..|++++|+|+|++ |++|
T Consensus 22 sp~~~~-la~~~~~g~v~iwd~~~~-~-------------------------~~~~~~~~~~~v~~~~~s~~~~~-l~~~ 73 (814)
T 3mkq_A 22 HPTEPW-VLTTLYSGRVEIWNYETQ-V-------------------------EVRSIQVTETPVRAGKFIARKNW-IIVG 73 (814)
T ss_dssp CSSSSE-EEEEETTSEEEEEETTTT-E-------------------------EEEEEECCSSCEEEEEEEGGGTE-EEEE
T ss_pred CCCCCE-EEEEeCCCEEEEEECCCC-c-------------------------eEEEEecCCCcEEEEEEeCCCCE-EEEE
Confidence 688874 455666778999999887 2 22222 37788999999999999 8999
Q ss_pred ecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eEEEecC---CCccceEEec-
Q 005325 82 IYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HYSLRIP---RMGRDMAYNS- 154 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~---~~~~~l~~~~- 154 (702)
+.|+.|+|||+.+... .+..|... +..+.++|++.+|++++.|++|.+|+.... .....+. ....++.+++
T Consensus 74 ~~dg~i~vw~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred eCCCeEEEEECCCCcEEEEEecCCCC--EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence 9999999999987443 45556433 777788999999999999999999998743 3222222 2234777777
Q ss_pred CCCcEEEEecCCCEEEEECCCCeEEEEeecCC-CCeEEEEEcC--CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCC
Q 005325 155 WSCDLLCAASSPELYRINLEQGRFLSSLNTQS-PALNVVSRSK--LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAG 231 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-~~V~~l~~sp--~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~ 231 (702)
....+++++.++.|++||+.++.....+..|. ..|++++|+| ++.+|++|+.||.|++||+.++..+..+..|
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---- 227 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---- 227 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC----
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC----
Confidence 44458888999999999999888777776665 7899999999 8899999999999999999999999998877
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC-eEEEeCCCEEEEEe
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP-KLITTDNHIVRIWD 309 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~-ll~ss~Dg~V~IWd 309 (702)
...|++++|+|+ +.+|++|+.||.|++||+.+++++. +..| ..+|++++|+| ++.. +++++.++.+.+|+
T Consensus 228 --~~~v~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 228 --MSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHP---TGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp --SSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECT---TCGGGEEEEEETTEEEEEE
T ss_pred --CCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEcc---CCCceEEEEEeCCCEEEEE
Confidence 689999999999 9999999999999999999988877 4444 67999999998 3333 47777788899999
Q ss_pred CCCCceeEEe-------------------------------------------cCCCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 310 PETGESMTSI-------------------------------------------EPTAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 310 ~~tg~~l~~i-------------------------------------------~~h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
+..+.....+ ..|...+.+++|+|++.++++++ ++.
T Consensus 300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~ 378 (814)
T 3mkq_A 300 LGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGE 378 (814)
T ss_dssp CSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTE
T ss_pred cCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCE
Confidence 7653322211 22344678899999988888887 788
Q ss_pred EEEEEcCC
Q 005325 347 IPSYFIPD 354 (702)
Q Consensus 347 I~~~~ip~ 354 (702)
+.+|.++.
T Consensus 379 ~~i~~~~~ 386 (814)
T 3mkq_A 379 YVIYTALA 386 (814)
T ss_dssp EEEEETTT
T ss_pred EEEEECcc
Confidence 88887643
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-28 Score=292.92 Aligned_cols=313 Identities=13% Similarity=0.050 Sum_probs=235.2
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatG 81 (702)
.||||. ++...+.++.|+||++..+ +++..+.+...|++|+|+| |++ |+++
T Consensus 25 fspdg~-~lAsgs~Dg~I~lw~~~~~--------------------------~~~~~~~~~~~V~~l~fsp-g~~-L~S~ 75 (902)
T 2oaj_A 25 FDFTQN-LLAIATVTGEVHIYGQQQV--------------------------EVVIKLEDRSAIKEMRFVK-GIY-LVVI 75 (902)
T ss_dssp EETTTT-EEEEEETTSEEEEECSTTC--------------------------EEEEECSSCCCEEEEEEET-TTE-EEEE
T ss_pred ECCCCC-EEEEEeCCCEEEEEeCCCc--------------------------EEEEEcCCCCCEEEEEEcC-CCE-EEEE
Confidence 367876 3566678889999987655 2233345678899999999 887 8999
Q ss_pred ecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE-EEec-------------CC
Q 005325 82 IYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY-SLRI-------------PR 145 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~-~~~i-------------~~ 145 (702)
+.|+.|+|||+.+... .+. |. ..+..+.++|++.+|++++.|++|++|++..... ...+ ..
T Consensus 76 s~D~~v~lWd~~~~~~~~~~~-~~--~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTTVF-VP--GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp ETTCEEEEEETTTCSEEEEEE-CS--SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred ECcCeEEEEECCCCcEEEEEc-CC--CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 9999999999987433 332 32 2477788999999999999999999999985332 2222 12
Q ss_pred CccceEEecCC-CcEEEEecCCCEEEEECCCCeEEEEeecC------------------CCCeEEEEEcCCCCEEEEEEc
Q 005325 146 MGRDMAYNSWS-CDLLCAASSPELYRINLEQGRFLSSLNTQ------------------SPALNVVSRSKLHGLIACGGE 206 (702)
Q Consensus 146 ~~~~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~~~~l~~h------------------~~~V~~l~~sp~~~llasgs~ 206 (702)
...+++++|.. ..+++++.++.| +||+.+++.+..+..| ...|++++|+|++.+|++|+.
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 23478888864 457888888999 9999999999888766 467999999999999999999
Q ss_pred CCeEEEEECCCCcceeE--E--------------------------ec-----c----------cC--------------
Q 005325 207 DGAVECFDMRMRSSAAR--I--------------------------NA-----V----------AP-------------- 229 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~--l--------------------------~~-----~----------~~-------------- 229 (702)
||+|++||+++++++.. + .. + ..
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 99999999976543221 0 00 0 00
Q ss_pred --------------------------------------------------C--------------------C--------
Q 005325 230 --------------------------------------------------A--------------------G-------- 231 (702)
Q Consensus 230 --------------------------------------------------~--------------------~-------- 231 (702)
. .
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 0 0
Q ss_pred -------CCCCCeEEEE----------------------------------EcCCCCCEEEEEeCCCeEEEEEcCCCeE-
Q 005325 232 -------DADQEVTALE----------------------------------FDSNGGFLMGVGSSTGKVLIYDLRSSYP- 269 (702)
Q Consensus 232 -------~~~~~Vtsla----------------------------------fspd~g~~LasGs~DG~V~lwDlrs~~~- 269 (702)
.|...|++++ |+|+ +.+|++|+.||+|++||+.++..
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEEEEEETTSEEEEEESSCCTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-CcEEEEecCCCcEEEEECCCcccc
Confidence 0002233333 3577 88999999999999999887642
Q ss_pred ----EEEe-------eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc------------------------
Q 005325 270 ----IRVK-------DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE------------------------ 314 (702)
Q Consensus 270 ----l~~~-------~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~------------------------ 314 (702)
+... +| ...|++|+|+| ++..+++++.|++|+|||+.+++
T Consensus 471 ~~~~~~~~l~~~~~~~h--~~~V~svafsp---dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAK--ELAVDKISFAA---ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp TTBCEEEEHHHHTTCSS--SCCEEEEEEET---TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred CCceEEeechhhcCCCC--CCceeEEEecC---CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 1111 44 67999999998 45555566689999999998662
Q ss_pred ---------------------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 315 ---------------------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 315 ---------------------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++..+..|.+.|++|+|+|++ +|++|+.|+.|.+|.+..
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 467888999999999999999 999999999999999643
No 72
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-28 Score=253.12 Aligned_cols=270 Identities=11% Similarity=0.073 Sum_probs=213.0
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEec
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIY 83 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~ 83 (702)
+||.. ++.++.++.|+||++..+ ... .. -..+...+++++|+|++.+ |++|+.
T Consensus 27 ~~~~~-l~s~~~dg~v~vw~~~~~-~~~----------------------~~--~~~~~~~v~~~~~~~~~~~-l~~~~~ 79 (313)
T 3odt_A 27 VDDSK-VASVSRDGTVRLWSKDDQ-WLG----------------------TV--VYTGQGFLNSVCYDSEKEL-LLFGGK 79 (313)
T ss_dssp EETTE-EEEEETTSEEEEEEESSS-EEE----------------------EE--EEECSSCEEEEEEETTTTE-EEEEET
T ss_pred cCCCE-EEEEEcCCcEEEEECCCC-EEE----------------------EE--eecCCccEEEEEECCCCCE-EEEecC
Confidence 56653 577788888999999776 111 11 1235788999999999999 899999
Q ss_pred CCcEEEEEcCCc-----eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCC-CccceEEec-CC
Q 005325 84 PPQVKVYELRQL-----SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPR-MGRDMAYNS-WS 156 (702)
Q Consensus 84 dg~I~vwdl~~~-----~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~-~~~~l~~~~-~s 156 (702)
++.|++|++... ...+..| ...+..+.+ ++..|++++.|+.|.+|+.......+..+. ...++.+.+ ..
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTLIGH-QGNVCSLSF---QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEECCC-SSCEEEEEE---ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTT
T ss_pred CCeEEEEEeeecCCCCcccchhhc-ccCEEEEEe---cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCC
Confidence 999999998762 3355556 344444444 568999999999999999443333333322 233777777 44
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~ 235 (702)
..+++++.++.|++|| .+..+..+.. |...|++++|+|++. |++|+.||.|++||+++++.+..+..+ ..
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~------~~ 226 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH------ES 226 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC------SS
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC------Cc
Confidence 5588889999999999 5567777777 888999999999988 999999999999999999999999877 68
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
.|++++|+|+ + .|++|+.||.|++||+++++++. +..| ..+|++++|+| ++.+++++.|+.|+|||+.+++
T Consensus 227 ~i~~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~----~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 227 FVYCIKLLPN-G-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMS----NGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CEEEEEECTT-S-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECT----TSCEEEEETTSCEEEEESCGGG
T ss_pred eEEEEEEecC-C-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEcc----CCCEEEEeCCCcEEEEeCCCCc
Confidence 9999999999 7 69999999999999999998877 4555 67999999998 5668888899999999999887
Q ss_pred eeEEecC
Q 005325 315 SMTSIEP 321 (702)
Q Consensus 315 ~l~~i~~ 321 (702)
.+.....
T Consensus 299 ~~~~~~~ 305 (313)
T 3odt_A 299 WASEDEI 305 (313)
T ss_dssp CCC----
T ss_pred eeehhhh
Confidence 7655443
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-27 Score=261.88 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=210.6
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
++.++.++.|+||++..+ ... .+....+...|++++|+|+|.+ |++|+.++.|++
T Consensus 106 l~~~~~d~~v~lw~~~~~-~~~-----------------------~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~i 160 (401)
T 4aez_A 106 VVAVALERNVYVWNADSG-SVS-----------------------ALAETDESTYVASVKWSHDGSF-LSVGLGNGLVDI 160 (401)
T ss_dssp EEEEEETTEEEEEETTTC-CEE-----------------------EEEECCTTCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred EEEEECCCeEEEeeCCCC-cEe-----------------------EeeecCCCCCEEEEEECCCCCE-EEEECCCCeEEE
Confidence 688889999999999888 211 1222346788999999999999 899999999999
Q ss_pred EEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceEEEecC---CCccceEEecCCCcEEEEe
Q 005325 90 YELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHYSLRIP---RMGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 90 wdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~~i~---~~~~~l~~~~~s~~llv~s 163 (702)
||+.+.. ..+..| ...+..+.+ ++..|++++.|+.|.+|+.. .......+. ....++.+++....+++++
T Consensus 161 wd~~~~~~~~~~~~~-~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGH-QARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCC-SSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCC-CCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9998743 344555 344444444 45899999999999999987 332222222 2233788888777799999
Q ss_pred cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEE--cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEE
Q 005325 164 SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGG--EDGAVECFDMRMRSSAARINAVAPAGDADQEVTAL 240 (702)
Q Consensus 164 ~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs--~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtsl 240 (702)
.++.|++||+.++..+..+..|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+..+ ..|+++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~ 309 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-------SQVTSL 309 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-------SCEEEE
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-------CcEEEE
Confidence 99999999999999999999999999999999976 6777766 7999999999999999888765 789999
Q ss_pred EEcCCCCCEEEE--EeCCCeEEEEEcCCCeEEE---EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce
Q 005325 241 EFDSNGGFLMGV--GSSTGKVLIYDLRSSYPIR---VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES 315 (702)
Q Consensus 241 afspd~g~~Las--Gs~DG~V~lwDlrs~~~l~---~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~ 315 (702)
+|+|+ +.+|++ |+.||.|+|||+.++.... +..| ..+|.+++|+| ++..+++++.|+.|+||++.+++.
T Consensus 310 ~~s~~-~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h--~~~v~~~~~s~---dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 310 IWSPH-SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH--DTRVLYSALSP---DGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EECSS-SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC--SSCCCEEEECT---TSSEEEEECTTSEEEEEECCC---
T ss_pred EECCC-CCeEEEEeecCCCcEEEEecCCccceeEEEecCC--CCCEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcc
Confidence 99999 999998 4489999999999976544 3455 68999999998 444555666899999999999887
Q ss_pred eEEec
Q 005325 316 MTSIE 320 (702)
Q Consensus 316 l~~i~ 320 (702)
+....
T Consensus 384 ~~~~~ 388 (401)
T 4aez_A 384 VKRPI 388 (401)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.9e-28 Score=260.24 Aligned_cols=279 Identities=10% Similarity=0.129 Sum_probs=208.7
Q ss_pred ccCCCcceEEEEe---cCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCC---CCE
Q 005325 3 SRGGEGNAMKSTL---INGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPD---GEF 76 (702)
Q Consensus 3 s~dg~~~~l~~s~---~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpD---G~~ 76 (702)
+|||..+++..+. ++.|+||++..+ .. ..+..+.++..|++++|+|+ |.+
T Consensus 27 ~p~~~~l~~~~s~~~~d~~v~iw~~~~~-~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 27 VPCSAKFVTMGNFARGTGVIQLYEIQHG-DL-----------------------KLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp CTTSSEEEEEEC--CCCEEEEEEEECSS-SE-----------------------EEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred cCCCceEEEecCccCCCcEEEEEeCCCC-cc-----------------------cceeeecccCcEEEEEEcCCCCCCce
Confidence 6788765444444 788999999887 21 12334467889999999999 677
Q ss_pred EEEEEecCCcEEEEEcCCc---eEEEeeecCCceEEEEE-----EcCCCCEEEEEECCCeEEEEecCC-c--eEEEecCC
Q 005325 77 LIVSGIYPPQVKVYELRQL---SLKFERHLDSEIINFEV-----LADDYSKLAFLCADRSISLHAKYG-K--HYSLRIPR 145 (702)
Q Consensus 77 llatGs~dg~I~vwdl~~~---~~~~~~h~~~~vv~~~~-----ls~dg~~Las~s~D~~I~iw~~~g-~--~~~~~i~~ 145 (702)
|++|+.|+.|++||+.+. ...+..| ...+..+.+ +++++..|++++.|+.|.+|+... . ...+..+.
T Consensus 83 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 83 -LATGDFGGNLHIWNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp -EEEEETTSCEEEECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred -EEEecCCCeEEEEeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 899999999999999863 3455666 444555544 468999999999999999999873 2 23332222
Q ss_pred -----CccceE----EecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC---CCCEEEEEEcCCeEEEE
Q 005325 146 -----MGRDMA----YNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK---LHGLIACGGEDGAVECF 213 (702)
Q Consensus 146 -----~~~~l~----~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp---~~~llasgs~DG~V~iW 213 (702)
...++. +.+....+++++.++.|++||+.+++.... ..|...|++++|+| ++.+|++|+.||.|++|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 122444 334555588888899999999999987544 57888999999999 89999999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcCCCe-------------------EEE-E
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF-LMGVGSSTGKVLIYDLRSSY-------------------PIR-V 272 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~-~LasGs~DG~V~lwDlrs~~-------------------~l~-~ 272 (702)
|++++..+..+... ....|...|++++|+|+ +. +|++|+.||.|+|||++.+. ++. +
T Consensus 240 d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQ-NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEE-EEECCSSCEEEEEEETT-EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred eCcCCCcccceeee-ccCCCcCCEEEEEECCC-CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99988776666511 00123789999999999 77 89999999999999998642 233 4
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeE-EEeCCCEEEEEeCCCCce
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKL-ITTDNHIVRIWDPETGES 315 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll-~ss~Dg~V~IWd~~tg~~ 315 (702)
..| ..+|++++|+| ++..++ +++.|+.|+|||+.+.+.
T Consensus 318 ~~~--~~~v~~~~~s~---~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 318 TLS--TQPISSLDWSP---DKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECC--SSCEEEEEECS---SSTTEEEEEETTSEEEEEEECC---
T ss_pred ccC--CCCeeEEEEcC---CCCeEEEEecCCCcEEEEECCCccc
Confidence 556 78999999998 555666 466899999999987654
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-27 Score=253.49 Aligned_cols=272 Identities=7% Similarity=0.032 Sum_probs=221.1
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
++||.. ++.++.++.|+||++..+ +. +..+ .|...|++++|+|++++ |+++
T Consensus 41 s~~~~~-l~~~~~dg~i~vwd~~~~-~~-------------------------~~~~~~h~~~v~~~~~~~~~~~-l~s~ 92 (369)
T 3zwl_B 41 NKEGDL-LFSCSKDSSASVWYSLNG-ER-------------------------LGTLDGHTGTIWSIDVDCFTKY-CVTG 92 (369)
T ss_dssp CTTSCE-EEEEESSSCEEEEETTTC-CE-------------------------EEEECCCSSCEEEEEECTTSSE-EEEE
T ss_pred cCCCCE-EEEEeCCCEEEEEeCCCc-hh-------------------------hhhhhhcCCcEEEEEEcCCCCE-EEEE
Confidence 677774 566677889999999887 22 1222 37788999999999999 8999
Q ss_pred ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC-----CeEEEEecCCc-------------eEEEec
Q 005325 82 IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD-----RSISLHAKYGK-------------HYSLRI 143 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D-----~~I~iw~~~g~-------------~~~~~i 143 (702)
+.|+.|++||+.+........... .+..+.+++++..|++++.+ +.|.+|+.... ...+..
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred eCCCeEEEEECCCCcEEEEeecCC-CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 999999999998854433333233 36667788999999999999 99999987521 111111
Q ss_pred CC---CccceEEecCCCcEEEEecCCCEEEEECCC-CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc
Q 005325 144 PR---MGRDMAYNSWSCDLLCAASSPELYRINLEQ-GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS 219 (702)
Q Consensus 144 ~~---~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~ 219 (702)
.. ...++.+.+....+++++.++.|++||+.+ +..+..+..|...|.+++|+|++.+|++++.||.|++||+++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 11 333777777777799999999999999999 78899999999999999999999999999999999999999999
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC--------------eEEEEEcCCCeEEE-EeeccCCCCeEEE
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG--------------KVLIYDLRSSYPIR-VKDHMFDSPIVDI 284 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG--------------~V~lwDlrs~~~l~-~~~h~~~~~I~sl 284 (702)
.+..+... ..+++++|+|+ +.++++++.++ .|++||+.+++++. +..| ..+|+++
T Consensus 252 ~~~~~~~~-------~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~ 321 (369)
T 3zwl_B 252 VLKKYETD-------CPLNTAVITPL-KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH--FGPLNTV 321 (369)
T ss_dssp EEEEEECS-------SCEEEEEECSS-SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred eeeeecCC-------CCceeEEecCC-CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc--cCcEEEE
Confidence 98888854 89999999999 99999999998 89999999998877 5667 6899999
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
+|+| ++..+++++.|+.|+||++.++...
T Consensus 322 ~~s~---~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 322 AISP---QGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EECT---TSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EECC---CCCEEEEEcCCCeEEEEECccccch
Confidence 9998 4455666668999999999875443
No 76
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.8e-28 Score=261.11 Aligned_cols=278 Identities=10% Similarity=0.032 Sum_probs=212.4
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECC-CCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETP-DGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~Sp-DG~~llatG 81 (702)
++||..+++.++.++.|+||++..+ ... ..+....+...|++++|+| ++.+ |++|
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~-~~~----------------------~~~~~~~h~~~v~~~~~~~~~~~~-l~s~ 137 (383)
T 3ei3_B 82 HPTHPTTVAVGSKGGDIILWDYDVQ-NKT----------------------SFIQGMGPGDAITGMKFNQFNTNQ-LFVS 137 (383)
T ss_dssp CSSCTTEEEEEEBTSCEEEEETTST-TCE----------------------EEECCCSTTCBEEEEEEETTEEEE-EEEE
T ss_pred CCCCCCEEEEEcCCCeEEEEeCCCc-ccc----------------------eeeecCCcCCceeEEEeCCCCCCE-EEEE
Confidence 5787556788888999999999877 221 1222235788999999999 5666 8999
Q ss_pred ecCCcEEEEEcCCceE-EEeeecC-CceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec--CCCccceEEecCCC
Q 005325 82 IYPPQVKVYELRQLSL-KFERHLD-SEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI--PRMGRDMAYNSWSC 157 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~-~~~~h~~-~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i--~~~~~~l~~~~~s~ 157 (702)
+.|+.|++||+..... .+..+.. ...+..+.+++++..|++++.|+.|.+|++.+....... .....++.+.+...
T Consensus 138 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCT
T ss_pred eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCC
Confidence 9999999999997443 3333321 133667778899999999999999999999754433222 22334888888887
Q ss_pred -cEEEEecCCCEEEEECCC----CeEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccCC-
Q 005325 158 -DLLCAASSPELYRINLEQ----GRFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAPA- 230 (702)
Q Consensus 158 -~llv~s~d~~V~vwdl~~----g~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~- 230 (702)
.+++++.++.|++||+.+ +.++..+ .|...|++++|+| ++.+|++++.|+.|++||++++..+..+..+...
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 588889999999999998 6777776 6999999999999 9999999999999999999999888877755211
Q ss_pred CCCC----------CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 231 GDAD----------QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 231 ~~~~----------~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
..|. ..+.+++|+|+ +.+ +|+.||.|+|||+.+++++. +..|.+...+..++|+| ++.+|++
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~d-g~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~----~g~~l~s 369 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPD-DQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP----TGDVLAS 369 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCC-TTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT----TSSEEEE
T ss_pred cccccceEEeccCCCCceEEEecCC-ccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec----CccEEEE
Confidence 1122 34445666666 555 67789999999999999877 55544467788889998 5666666
Q ss_pred eCCCEEEEEeCCC
Q 005325 300 TDNHIVRIWDPET 312 (702)
Q Consensus 300 s~Dg~V~IWd~~t 312 (702)
+.|+.|+|||+.+
T Consensus 370 ~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GMGFNILIWNRED 382 (383)
T ss_dssp EETTEEEEEECC-
T ss_pred ecCCcEEEEecCC
Confidence 6799999999874
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-28 Score=292.72 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=95.6
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-------------------------------------------
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY------------------------------------------- 268 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~------------------------------------------- 268 (702)
.|...|++|+|+|+ |.+||+|+.||+|+|||+.+++
T Consensus 486 ~h~~~V~svafspd-g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 486 AKELAVDKISFAAE-TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQG 564 (902)
T ss_dssp SSSCCEEEEEEETT-TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEE
T ss_pred CCCCceeEEEecCC-CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCc
Confidence 35678999999999 9999999999999999998652
Q ss_pred --EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeE--E---e-cCCCCceeEEEEE-----cC
Q 005325 269 --PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMT--S---I-EPTAGKINDVCVF-----KD 334 (702)
Q Consensus 269 --~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~--~---i-~~h~~~I~~v~~~-----p~ 334 (702)
++. +..| ..+|++|+|+| ++.+++++.|++|+|||+.++..+. . + .+|...|++|+|+ ||
T Consensus 565 ~~~~~~l~~h--~~~V~svafSp----dG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~D 638 (902)
T 2oaj_A 565 FMPSTAVHAN--KGKTSAINNSN----IGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDD 638 (902)
T ss_dssp EEEEEEECCC--SCSEEEEEECB----TSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTS
T ss_pred cceeEEEEcC--CCcEEEEEecC----CcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCC
Confidence 233 4456 78999999998 5555566689999999998877664 2 2 2788999999999 87
Q ss_pred C---CEEEEEeCCCcEEEEEc
Q 005325 335 S---GLLLLALDCSQIPSYFI 352 (702)
Q Consensus 335 ~---~~l~~a~~d~~I~~~~i 352 (702)
+ .+|++++.|+.|.+|.+
T Consensus 639 g~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 639 GYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SSEEEEEEEEETTSEEEEEEE
T ss_pred CCcceEEEEEecCCcEEEEEE
Confidence 5 79999999999999998
No 78
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=286.57 Aligned_cols=303 Identities=8% Similarity=-0.016 Sum_probs=212.0
Q ss_pred EEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC------CCEEEEEEec
Q 005325 11 MKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD------GEFLIVSGIY 83 (702)
Q Consensus 11 l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD------G~~llatGs~ 83 (702)
.+.+.++.|+||++..+ .... .+.+.+ .+...|++|+|+|+ +.+ ||+|+.
T Consensus 177 aS~s~D~tI~iWd~~~~-~~~~---------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~-LAs~s~ 233 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTS-TLHC---------------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGC-LSFVSQ 233 (524)
T ss_dssp -----CEEEEEEEEETT-TCCE---------------------EEEEEEEECCCSEEEEEECSSCCCSSSSCE-EEEEET
T ss_pred ccCCCCceEEEEEccCC-CCCc---------------------eEEEEEEecCCcEEEEEECCCCCCCCCCce-EEEEec
Confidence 33456778999999887 3110 011222 24578999999997 456 999999
Q ss_pred CCcEEEEEcCCce-------------EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce--EEEecCC-C
Q 005325 84 PPQVKVYELRQLS-------------LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKH--YSLRIPR-M 146 (702)
Q Consensus 84 dg~I~vwdl~~~~-------------~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~--~~~~i~~-~ 146 (702)
|++|+|||+.... ..+..|. .. +..+.++++ ..|++++.|++|++|++. +.. ..+..+. .
T Consensus 234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~-v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SL-ITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp TSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-TC-EEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred CCeEEEEEcCCCccccccceeecCceEEEEcCC-CC-EEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 9999999997531 2444553 33 555556665 589999999999999997 322 1222222 2
Q ss_pred ccceE-EecCC--CcEEEEecCCCEEEEECCCCeEEEEeecCCC--CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce
Q 005325 147 GRDMA-YNSWS--CDLLCAASSPELYRINLEQGRFLSSLNTQSP--ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA 221 (702)
Q Consensus 147 ~~~l~-~~~~s--~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~--~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v 221 (702)
..+++ ..+.. ..+++++.|++|++||+.+++++..+.+|.. .|.+|+|+|++..|++++.|++|++||++++.++
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 23553 23333 3478899999999999999887777777764 5889999999999999999999999999999988
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eec---cCCCCeEEEEEeeccCCCCCeE
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDH---MFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h---~~~~~I~sl~fsp~~~~~~~ll 297 (702)
.++..| ...|++|+|+|+ |.+|++|+.||+|+|||+... .+.. ..+ .....|++++|+| ++.++
T Consensus 391 ~~l~gH------~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp----~g~~~ 458 (524)
T 2j04_B 391 HPLVSR------ETTITAIGVSRL-HPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI----KDDKY 458 (524)
T ss_dssp EEEEEC------SSCEEEEECCSS-CCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS----SSCEE
T ss_pred eeeecC------CCceEEEEeCCC-CCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC----CCCeE
Confidence 888877 789999999999 999999999999999998653 2111 111 0123578999998 44444
Q ss_pred EEeCCCEEEEEeCC-CCceeEEecCCCCceeEEEEEcCC---CEEEEEeCCCcEEEEEcC
Q 005325 298 ITTDNHIVRIWDPE-TGESMTSIEPTAGKINDVCVFKDS---GLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 298 ~ss~Dg~V~IWd~~-tg~~l~~i~~h~~~I~~v~~~p~~---~~l~~a~~d~~I~~~~ip 353 (702)
...++ +.+|+.. ++.++..+.+|...|++|+|+|++ ..+++++.++.|++|.+.
T Consensus 459 ~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 459 RIDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred EccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 33332 3455443 577888899999999999999985 489999999999999864
No 79
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.6e-27 Score=250.28 Aligned_cols=246 Identities=17% Similarity=0.226 Sum_probs=206.8
Q ss_pred EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCC---ccceEEecCCCcEEEEecCCCEEEEEC
Q 005325 97 LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRM---GRDMAYNSWSCDLLCAASSPELYRINL 173 (702)
Q Consensus 97 ~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~---~~~l~~~~~s~~llv~s~d~~V~vwdl 173 (702)
..+.+|... +..+.++|++.+|++++.|+.|++|+.........+..+ ..++.+.+.+..+++++.++.|.+||+
T Consensus 17 ~~~~gh~~~--v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 17 FTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEcccCCc--EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 355667544 777778999999999999999999998743332223222 237788887777999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 174 EQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 174 ~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
.+++.+..+..|...|.+++|+|++++|++|+.||+|++||+++++.+..+..| ..+|++++|+|+ +.+|++|
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~ 167 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH------SDPVSAVHFNRD-GSLIVSS 167 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT-SSEEEEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC------CCcEEEEEEcCC-CCEEEEE
Confidence 999999999999999999999999999999999999999999999999888877 689999999999 9999999
Q ss_pred eCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeE--EEE
Q 005325 254 SSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKIND--VCV 331 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~--v~~ 331 (702)
+.||.|++||+++++++......+..+|..++|+| ++..+++++.|+.|+|||+.+++++..+.+|...+.. ..+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 99999999999998887643322367899999998 4556666778999999999999999999988765433 334
Q ss_pred E-cCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 F-KDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~-p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+ +++.+|++++.|+.|.+|.+..
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCC
Confidence 4 5778899999999999998765
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.2e-28 Score=260.43 Aligned_cols=272 Identities=15% Similarity=0.101 Sum_probs=216.0
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatG 81 (702)
++||.- ++.++.++.|+||++..+ . .+.+..+ .|...|++++|+|++++ |++|
T Consensus 17 s~~~~~-l~~~~~d~~v~i~~~~~~-~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~ 70 (372)
T 1k8k_C 17 NKDRTQ-IAICPNNHEVHIYEKSGN-K-----------------------WVQVHELKEHNGQVTGVDWAPDSNR-IVTC 70 (372)
T ss_dssp CTTSSE-EEEECSSSEEEEEEEETT-E-----------------------EEEEEEEECCSSCEEEEEEETTTTE-EEEE
T ss_pred CCCCCE-EEEEeCCCEEEEEeCCCC-c-----------------------EEeeeeecCCCCcccEEEEeCCCCE-EEEE
Confidence 577773 455668889999999887 1 1123333 47889999999999999 8999
Q ss_pred ecCCcEEEEEcCCceE----EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce-----EEEecC--CCccce
Q 005325 82 IYPPQVKVYELRQLSL----KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH-----YSLRIP--RMGRDM 150 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~-----~~~~i~--~~~~~l 150 (702)
+.|+.|++||+.+... .+..|. ..+..+.+++++.+|++++.|+.|.+|+..... ..+..+ ....++
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCC--CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 9999999999987542 223342 336777788999999999999999999887322 222122 223378
Q ss_pred EEecCCCcEEEEecCCCEEEEEC------------------CCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 151 AYNSWSCDLLCAASSPELYRINL------------------EQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 151 ~~~~~s~~llv~s~d~~V~vwdl------------------~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~i 212 (702)
.+.+....+++++.++.|++||+ ..+..+..+..|...|++++|+|++.+|++|+.||.|++
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 88887777999999999999994 478899999999999999999999999999999999999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC--CeE---------------------
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS--SYP--------------------- 269 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs--~~~--------------------- 269 (702)
||+++++.+..+..+ ...|++++|+|+ +.+|++| .||.|++||++. +..
T Consensus 229 ~d~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 229 ADADKKMAVATLASE------TLPLLAVTFITE-SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp EEGGGTTEEEEEECS------SCCEEEEEEEET-TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred EECCCCceeEEEccC------CCCeEEEEEecC-CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 999999999999887 689999999999 8888887 999999999988 431
Q ss_pred ------------------EEE-eeccCCCCeEEEEEeeccCCC---CCeEEEeCCCEEEEEeCCCCc
Q 005325 270 ------------------IRV-KDHMFDSPIVDIKWHQSINTE---RPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 270 ------------------l~~-~~h~~~~~I~sl~fsp~~~~~---~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
..+ ..| ..+|++++|+| .++ ..+++++.|+.|+||++.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~--~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLDSLH--KNSVSQISVLS--GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp HHHHCCCCC---------CCCSSSS--SSCEEEEEEEE--STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhhcccccccccCccccccccccc--cCCcceeEEec--CCCcceeeEEEecCCCceEEEEecChh
Confidence 111 245 78999999886 223 456667789999999997654
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=8.1e-28 Score=260.23 Aligned_cols=282 Identities=10% Similarity=0.081 Sum_probs=216.2
Q ss_pred cceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCC----C---CEEEEE
Q 005325 8 GNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPD----G---EFLIVS 80 (702)
Q Consensus 8 ~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpD----G---~~llat 80 (702)
.++++++.++.|+||++..+ .....+. .+ ..-..|...|++++|+|+ | .+ |++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~-~~~~~~~----------------~~--~~~~~h~~~v~~~~~~~~~~~~g~~~~~-l~s 86 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLL-DNENPKD----------------KS--YSHFVHKSGLHHVDVLQAIERDAFELCL-VAT 86 (397)
T ss_dssp SEEEEEETTSEEEEEESBCC-TTCCGGG----------------GE--EEEECCTTCEEEEEEEEEEETTTEEEEE-EEE
T ss_pred CeEEEEcCCCEEEEEECCCc-ccccCCC----------------cc--eEEecCCCcEEEEEEecccccCCccccE-EEE
Confidence 34677888899999999987 3211110 01 111257889999999999 8 88 899
Q ss_pred EecCCcEEEEEcCCc-------eEEEeeecC---CceEEEEEEc----CCCCE-EEEEECCCeEEEEecCC--------c
Q 005325 81 GIYPPQVKVYELRQL-------SLKFERHLD---SEIINFEVLA----DDYSK-LAFLCADRSISLHAKYG--------K 137 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~-------~~~~~~h~~---~~vv~~~~ls----~dg~~-Las~s~D~~I~iw~~~g--------~ 137 (702)
|+.|+.|++|++.+. ...+..|.. ...+..+.++ +++.. |++++.|+.|.+|+... .
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 999999999999873 334555531 1336666677 88999 99999999999998764 1
Q ss_pred eE-----EEec--------CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec---C---CCCeEEEEEcCCC
Q 005325 138 HY-----SLRI--------PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT---Q---SPALNVVSRSKLH 198 (702)
Q Consensus 138 ~~-----~~~i--------~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~---h---~~~V~~l~~sp~~ 198 (702)
.. .+.. .....++.+.+.. .+++++.++.|++||+.+++.+..+.. | ...|++++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 11 2221 3334588899888 888888999999999999999999999 9 9999999999999
Q ss_pred CEEEEEEcC---CeEEEEECCCCcceeEEecccCC-------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 199 GLIACGGED---GAVECFDMRMRSSAARINAVAPA-------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 199 ~llasgs~D---G~V~iWD~~t~~~v~~l~~~~~~-------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
.+|++|+.| |.|++||+++++.+..+...... ..|...|++++|+|+ +.+|++|+.||.|+|||+++++
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCc
Confidence 999999999 99999999999999988871000 002789999999999 9999999999999999999999
Q ss_pred EEEEee-------c-------------cCCCCeEEEEEeeccCCC----------CCeEEEeCCCEEEEEeCCCCc
Q 005325 269 PIRVKD-------H-------------MFDSPIVDIKWHQSINTE----------RPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 269 ~l~~~~-------h-------------~~~~~I~sl~fsp~~~~~----------~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
++.... | .+..+|++++|+| ++ ..+++++.|+.|+||++.+|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 325 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK---KGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC---TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred eeEEEecccCcccchhhhhccccccccccCCceeEEEecc---ccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 877433 3 0167999999998 33 356666789999999998764
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.1e-28 Score=261.00 Aligned_cols=248 Identities=13% Similarity=0.124 Sum_probs=188.3
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc----eEEEeeecCCceEEEEEEcC--CCCEEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL----SLKFERHLDSEIINFEVLAD--DYSKLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~----~~~~~~h~~~~vv~~~~ls~--dg~~Las~s~D~~I~iw~ 133 (702)
.|...|++++|+|+|++ ||+|+.|+.|+|||+.+. ...+..|.. . +..+.+++ ++..|++++.|++|++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~-V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEG-P-VWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEEECCSS-C-EEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-c-EEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 57899999999999999 899999999999999763 235566743 3 44444543 478899999998888866
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCC--eEEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCe
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG--RFLSSLNTQSPALNVVSRSKL--HGLIACGGEDGA 209 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~ 209 (702)
.. ++ ..+..+.+|...|++++|+|+ +.+|++|+.|++
T Consensus 88 ~~---------------------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 88 EE---------------------------------------NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp CS---------------------------------------SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred CC---------------------------------------CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 43 32 234566789999999999998 789999999999
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCC----------------CCEEEEEeCCCeEEEEEcCCC---eEE
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNG----------------GFLMGVGSSTGKVLIYDLRSS---YPI 270 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~----------------g~~LasGs~DG~V~lwDlrs~---~~l 270 (702)
|++||++.......... ...|...|.+++|+|+. +.+|++|+.|+.|+|||++.. .++
T Consensus 129 i~lwd~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 205 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKI---NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205 (316)
T ss_dssp EEEEEECSSSCEEECCB---TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred EEEEecCCCCCcceeee---eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence 99999987642211111 12347889999999872 368999999999999999865 333
Q ss_pred E-EeeccCCCCeEEEEEeeccC-CCCCeEEEeCCCEEEEEeCCCC---c-eeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 271 R-VKDHMFDSPIVDIKWHQSIN-TERPKLITTDNHIVRIWDPETG---E-SMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 271 ~-~~~h~~~~~I~sl~fsp~~~-~~~~ll~ss~Dg~V~IWd~~tg---~-~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
. +..| ..+|.+++|+|... +...+++++.|++|+||++.+. . ....+..|...|++++|+|++.+|++++.|
T Consensus 206 ~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 206 QKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp ECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred eecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 3 4566 67999999998210 0134566678999999999762 1 223456688999999999999999999999
Q ss_pred CcEEEEEcCC
Q 005325 345 SQIPSYFIPD 354 (702)
Q Consensus 345 ~~I~~~~ip~ 354 (702)
+.|.+|....
T Consensus 284 ~~v~lw~~~~ 293 (316)
T 3bg1_A 284 NKVTLWKESV 293 (316)
T ss_dssp SCEEEEEECT
T ss_pred CeEEEEEECC
Confidence 9999998764
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.7e-28 Score=271.41 Aligned_cols=284 Identities=10% Similarity=0.030 Sum_probs=207.1
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECC-CCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETP-DGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~Sp-DG~~llatG 81 (702)
+|.+..++.+.+.++.|+||++..+ .. ..++....|...|++|+|+| ++.+ |+||
T Consensus 128 ~P~~~~~lasGs~dg~i~lWd~~~~-~~----------------------~~~~~~~gH~~~V~~l~f~p~~~~~-l~s~ 183 (435)
T 4e54_B 128 HPTHPSTVAVGSKGGDIMLWNFGIK-DK----------------------PTFIKGIGAGGSITGLKFNPLNTNQ-FYAS 183 (435)
T ss_dssp CSSCTTCEEEEETTSCEEEECSSCC-SC----------------------CEEECCCSSSCCCCEEEECSSCTTE-EEEE
T ss_pred eCCCCCEEEEEeCCCEEEEEECCCC-Cc----------------------eeEEEccCCCCCEEEEEEeCCCCCE-EEEE
Confidence 4555556677788999999999876 21 11233346889999999998 6777 8999
Q ss_pred ecCCcEEEEEcCCceEEEee--ecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-EecC-CCccceEEecCCC
Q 005325 82 IYPPQVKVYELRQLSLKFER--HLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRIP-RMGRDMAYNSWSC 157 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~--h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i~-~~~~~l~~~~~s~ 157 (702)
+.|++|+|||+......... +.....+..+.+++++.+|++++.|+.|.+|+..+.... +..+ ....++.+++...
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence 99999999999875443222 222222455678899999999999999999998864322 2211 2233778887776
Q ss_pred c-EEEEecCCCEEEEECCCCeEEEE---eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCC
Q 005325 158 D-LLCAASSPELYRINLEQGRFLSS---LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDA 233 (702)
Q Consensus 158 ~-llv~s~d~~V~vwdl~~g~~~~~---l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~ 233 (702)
. +++++.|+.|++||+.+++.... ...|...|++|+|+|++.+|++|+.||+|+|||+.++.....+..+......
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 5 55778899999999988764433 3568899999999999999999999999999999999888877766322111
Q ss_pred CCCeEEEEEcCCCCCEEEEEe------------CCCeEEEEEcCCCeEEEEeeccCCCCeEEE-EEeeccCCCCCeEEEe
Q 005325 234 DQEVTALEFDSNGGFLMGVGS------------STGKVLIYDLRSSYPIRVKDHMFDSPIVDI-KWHQSINTERPKLITT 300 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs------------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl-~fsp~~~~~~~ll~ss 300 (702)
...+..+.|+|+ +..+++++ .++.|+|||+.+++.+......+...|.++ +|+| ++.+|+++
T Consensus 344 ~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp----dg~~lasg 418 (435)
T 4e54_B 344 HLTPIKAAWHPR-YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP----MGDTLASA 418 (435)
T ss_dssp SSCCCBCEECSS-SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT----TSSCEEEE
T ss_pred cceeEEEEEcCC-CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC----CCCEEEEE
Confidence 223445567777 66666654 345799999999998774322236788887 6998 66777888
Q ss_pred CCCEEEEEeCCCCce
Q 005325 301 DNHIVRIWDPETGES 315 (702)
Q Consensus 301 ~Dg~V~IWd~~tg~~ 315 (702)
.|+.|+||++.+|++
T Consensus 419 ~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 419 MGYHILIWSQQEART 433 (435)
T ss_dssp CSSEEEECCCC----
T ss_pred cCCcEEEEECCcCee
Confidence 889999999998865
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.6e-27 Score=263.16 Aligned_cols=268 Identities=12% Similarity=0.185 Sum_probs=217.3
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
++...|+|+.+ |+++ |++|+.|+.|++||+.+.. ..+..|. ..|..+. + ++..|++++.|++|.+|+....
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~-~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCLQ-Y--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEEE-C--CSSEEEEEETTSCEEEEESSSC
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEEE-E--CCCEEEEEcCCCeEEEEECCCC
Confidence 45567888776 8888 8999999999999998843 3555563 3344333 3 7799999999999999998843
Q ss_pred eEEEecCCCccceEEecCCC-cEEEEecCCCEEEEECCCCeEE---EEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSC-DLLCAASSPELYRINLEQGRFL---SSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~-~llv~s~d~~V~vwdl~~g~~~---~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
.....+..+...+....++. .+++++.++.|++||+.++..+ ..+.+|...|++++| ++++|++|+.||.|++|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 33333333333333333333 4888899999999999988655 677889999999999 67899999999999999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCC
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~ 292 (702)
|+++++.+..+..+ ...|++++|+ +.+|++|+.||.|++||+++++++. +..| ..+|.+++|.
T Consensus 282 d~~~~~~~~~~~~~------~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~----- 345 (435)
T 1p22_A 282 NTSTCEFVRTLNGH------KRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD----- 345 (435)
T ss_dssp ETTTCCEEEEEECC------SSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEECC-----
T ss_pred ECCcCcEEEEEcCC------CCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEec-----
Confidence 99999999999887 6899999995 6799999999999999999998877 5556 6899999995
Q ss_pred CCCeEEEeCCCEEEEEeCCCCc---------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 293 ERPKLITTDNHIVRIWDPETGE---------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 293 ~~~ll~ss~Dg~V~IWd~~tg~---------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+..+++++.|+.|+|||+.++. ++..+..|...|++++| ++.+|++++.|+.|.+|.+..
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 5667778899999999997765 78899999999999999 677899999999999998765
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=5.5e-28 Score=257.32 Aligned_cols=275 Identities=14% Similarity=0.179 Sum_probs=210.8
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCC----CCEEEE
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPD----GEFLIV 79 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpD----G~~lla 79 (702)
+||..+++.+..++.|+||++..+ ..+ ..+.......+...|++++|+|+ |.+ |+
T Consensus 31 ~~~~~~~~~~~~~~~v~vw~~~~~-~~~-------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~ 89 (366)
T 3k26_A 31 KEGDPLVFATVGSNRVTLYECHSQ-GEI-------------------RLLQSYVDADADENFYTCAWTYDSNTSHPL-LA 89 (366)
T ss_dssp CTTSCEEEEEEETTEEEEEEECGG-GCE-------------------EEEEEEECSCTTCCEEEEEEEECTTTCCEE-EE
T ss_pred CCCCceEEEECCCCEEEEEEcCCC-cEE-------------------EeeeeccccCCCCcEEEEEeccCCCCCCCE-EE
Confidence 357777788888889999999876 221 11112222336688999999999 556 89
Q ss_pred EEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcC-CCCEEEEEECCCeEEEEecCCceEEEec------CCCccce
Q 005325 80 SGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLAD-DYSKLAFLCADRSISLHAKYGKHYSLRI------PRMGRDM 150 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~g~~~~~~i------~~~~~~l 150 (702)
+|+.|+.|++||+.+... .+..|... +..+.++| ++..|++++.|+.|++|+.........+ .....++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNA--INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSC--EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCc--EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 999999999999987443 44555333 56666777 8999999999999999999843333322 1223378
Q ss_pred EEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----------------------------CCCCeEEEEEcCCCCEEE
Q 005325 151 AYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----------------------------QSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 151 ~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----------------------------h~~~V~~l~~sp~~~lla 202 (702)
.+.+....+++++.++.|++||+.+++.+..+.. |...|++++|+ +.+|+
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 8888777799999999999999998765544433 88999999999 67999
Q ss_pred EEEcCCeEEEEECCCCcc--------------eeEEecccCCCCCCCCeEEEEEcCCC-CCEEEEEeCCCeEEEEEcCCC
Q 005325 203 CGGEDGAVECFDMRMRSS--------------AARINAVAPAGDADQEVTALEFDSNG-GFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~--------------v~~l~~~~~~~~~~~~Vtslafspd~-g~~LasGs~DG~V~lwDlrs~ 267 (702)
+++.||.|++||+++... +..+..+ ...|++++|+|+. +.+|++|+.||.|+|||+.++
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS------QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS------SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheecccccc------CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999987654 5566655 6889999999863 789999999999999999987
Q ss_pred eE----E-EEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 268 YP----I-RVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 268 ~~----l-~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
++ + .+..|.+..+|++++|+| ++..+++++.|+.|+|||+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAAIRQTSFSR---DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SGGGCEEEEECCTTCCSCEEEEEECT---TSSEEEEEETTSEEEEEEC--
T ss_pred CCccccceEEcccccCCceEEEEeCC---CCCeEEEEeCCCEEEEEEecC
Confidence 53 2 355665568999999998 455566677899999999853
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=8.2e-27 Score=258.73 Aligned_cols=271 Identities=12% Similarity=0.126 Sum_probs=220.0
Q ss_pred CCCc-eeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 61 FETA-TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~-v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
|... ++|+.+ ++.+ |++|+.|+.|++||+.+... .+..|... +..+.+++++ .|++++.|++|++|+....
T Consensus 120 h~~~v~~~~~~--~~~~-l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNY-VITGADDKMIRVYDSINKKFLLQLSGHDGG--VWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp CSSSCEEEEEE--ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred CCCCcEEEEEE--CCCE-EEEEcCCCcEEEEECCCCcEEEEEeCCCcC--EEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 4444 466666 5667 89999999999999988443 45556433 5666677775 9999999999999999843
Q ss_pred eEEEecCC---CccceEEec--CCCcEEEEecCCCEEEEECCCCe-----------------------EEEEeecCCCCe
Q 005325 138 HYSLRIPR---MGRDMAYNS--WSCDLLCAASSPELYRINLEQGR-----------------------FLSSLNTQSPAL 189 (702)
Q Consensus 138 ~~~~~i~~---~~~~l~~~~--~s~~llv~s~d~~V~vwdl~~g~-----------------------~~~~l~~h~~~V 189 (702)
.....+.. ...++.+.+ ....+++++.++.|++||+.++. ++..+.+|...|
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 33333332 223666664 33458899999999999998875 355677888888
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE
Q 005325 190 NVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~ 269 (702)
.++ ++++++|++|+.||.|++||+++++++..+..| ...|++++|+|+ +.+|++|+.||.|++||++++++
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------TDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEE
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE
Confidence 887 567889999999999999999999999998877 789999999999 99999999999999999999998
Q ss_pred EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEE
Q 005325 270 IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIP 348 (702)
Q Consensus 270 l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~ 348 (702)
+. +..| ..+|.+++|+ +..+++++.|+.|+|||+.++.....+. |...+..++|+|++.++++++ ++.|.
T Consensus 345 ~~~~~~h--~~~v~~~~~~-----~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 345 MYTLQGH--TALVGLLRLS-----DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp EEEECCC--SSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred EEEEeCC--CCcEEEEEEc-----CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 87 5566 6899999997 4567778899999999999988776665 477888999999999999888 88999
Q ss_pred EEEcCCC
Q 005325 349 SYFIPDL 355 (702)
Q Consensus 349 ~~~ip~l 355 (702)
+|.+..-
T Consensus 416 iwd~~~g 422 (464)
T 3v7d_B 416 IYNLRSG 422 (464)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9998763
No 87
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=255.34 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=192.6
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc----eEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL----SLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~----~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~ 133 (702)
.|...|++++|+|+|++ ||+|+.|+.|+||++... ...+..|... +..+.++++ +.+|++++.|+.|++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp ECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred CCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCc--EEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 47899999999999999 899999999999999742 2244555333 555556555 78888888888887755
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe--EEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCe
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR--FLSSLNTQSPALNVVSRSKL--HGLIACGGEDGA 209 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~--~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~ 209 (702)
+.+++ .+..+..|...|++++|+|+ +.+|++|+.||.
T Consensus 86 ---------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 126 (379)
T 3jrp_A 86 ---------------------------------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126 (379)
T ss_dssp ---------------------------------------EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ---------------------------------------cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc
Confidence 44444 45667789999999999999 899999999999
Q ss_pred EEEEECCCCcce--eEEecccCCCCCCCCeEEEEEcC-------------CCCCEEEEEeCCCeEEEEEcCCCeE----E
Q 005325 210 VECFDMRMRSSA--ARINAVAPAGDADQEVTALEFDS-------------NGGFLMGVGSSTGKVLIYDLRSSYP----I 270 (702)
Q Consensus 210 V~iWD~~t~~~v--~~l~~~~~~~~~~~~Vtslafsp-------------d~g~~LasGs~DG~V~lwDlrs~~~----l 270 (702)
|++||+++.... ..+..+ ...|++++|+| + +.+|++|+.||.|++||++++.. +
T Consensus 127 i~v~d~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDAH------AIGVNSASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp EEEEECCTTSCCCEEEEECC------TTCEEEEEECCCC----------CT-TCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEEEecCCCCceeeEEecCC------CCceEEEEEcCccccccccccCCCC-CCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence 999999987543 344444 68999999999 6 89999999999999999987642 2
Q ss_pred E-EeeccCCCCeEEEEEeeccCC---CCCeEEEeCCCEEEEEeCCCCc---eeEEe--cCCCCceeEEEEEcCCCEEEEE
Q 005325 271 R-VKDHMFDSPIVDIKWHQSINT---ERPKLITTDNHIVRIWDPETGE---SMTSI--EPTAGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 271 ~-~~~h~~~~~I~sl~fsp~~~~---~~~ll~ss~Dg~V~IWd~~tg~---~l~~i--~~h~~~I~~v~~~p~~~~l~~a 341 (702)
. +..| ..+|++++|+| + +..+++++.|+.|+|||+.++. ....+ ..|...|++++|+|++.+|+++
T Consensus 200 ~~~~~h--~~~v~~~~~sp---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 200 STLEGH--SDWVRDVAWSP---TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EEECCC--SSCEEEEEECC---CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEEecc--cCcEeEEEECC---CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 2 4455 78999999998 3 3455566689999999999864 22223 3378899999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 005325 342 LDCSQIPSYFIPD 354 (702)
Q Consensus 342 ~~d~~I~~~~ip~ 354 (702)
+.++.|.+|.+..
T Consensus 275 ~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 275 GGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSEEEEEEEE
T ss_pred cCCCcEEEEeCCC
Confidence 9999999998764
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.9e-27 Score=249.85 Aligned_cols=258 Identities=16% Similarity=0.111 Sum_probs=202.1
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCc------eEEEeeecCCceEEEEEEcC--CCCEEEEEECCCeEEE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQL------SLKFERHLDSEIINFEVLAD--DYSKLAFLCADRSISL 131 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~------~~~~~~h~~~~vv~~~~ls~--dg~~Las~s~D~~I~i 131 (702)
.|...|++++|+|+|++ ||+|+.|+.|+||++.+. ...+..|. .. +..+.+++ ++.+|++++.|++|++
T Consensus 9 gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~-v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SS-IVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SC-EEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcceecceeccCC-Cc-EEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 47899999999999999 899999999999999863 22334453 33 55555666 6899999999999998
Q ss_pred EecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCe
Q 005325 132 HAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL--HGLIACGGEDGA 209 (702)
Q Consensus 132 w~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~ 209 (702)
|+........ .....+.+..+..|...|++++|+|+ +.+|++|+.||.
T Consensus 86 wd~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 86 WEEDPDQEEC------------------------------SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp EEECTTSCTT------------------------------SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred EecCCCcccc------------------------------cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 8765211000 00011446677889999999999999 999999999999
Q ss_pred EEEEECCCCcceeEEecc-------cCCCCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCCeEEE---EeeccC
Q 005325 210 VECFDMRMRSSAARINAV-------APAGDADQEVTALEFDSN--GGFLMGVGSSTGKVLIYDLRSSYPIR---VKDHMF 277 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~-------~~~~~~~~~Vtslafspd--~g~~LasGs~DG~V~lwDlrs~~~l~---~~~h~~ 277 (702)
|++||+++++.+..+... .....+...|++++|+|+ ++.+|++++.++.+.+|+...+.+.. +..|
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-- 213 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-- 213 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC--
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC--
Confidence 999999988765544321 111245789999999995 37899999999999888888776532 3445
Q ss_pred CCCeEEEEEeeccCCC----CCeEEEeCCCEEEEEeCCCC----------------------------------------
Q 005325 278 DSPIVDIKWHQSINTE----RPKLITTDNHIVRIWDPETG---------------------------------------- 313 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~----~~ll~ss~Dg~V~IWd~~tg---------------------------------------- 313 (702)
..+|++++|+| ++ ..+++++.|+.|+|||+.++
T Consensus 214 ~~~i~~~~~~p---~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 214 KSLIRSISWAP---SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp CSCEEEEEECC---CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred CcceeEEEECC---CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence 78999999998 33 34666668999999999865
Q ss_pred ------ceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 314 ------ESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 314 ------~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
+++..+..|...|++++|+|++.+|++++.|+.|.+|.+...
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 677788899999999999999999999999999999998753
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-27 Score=262.68 Aligned_cols=298 Identities=11% Similarity=0.024 Sum_probs=215.3
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCC---CCccccchHh-------------hhhhccCcccccc-------------
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQR---SVAAWLTPKK-------------QRALRKNIDYQRR------------- 52 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~---slp~w~~~k~-------------kr~lk~~~~~~~r------------- 52 (702)
.|+||. +|.++..+.|.||++..| . .+..|..... .+.+....+-..+
T Consensus 12 ~s~dg~--~l~~~~~~~i~v~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (450)
T 2vdu_B 12 TSRDGS--LVFAIIKNCILSFKYQSP-NHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA 88 (450)
T ss_dssp ECSSSS--EEEEEETTEEEEEEEETT-TEEEEEEEEECCC----------------------------------------
T ss_pred ecCCCC--EEEEEeCCeEEEEECCCC-CcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence 378888 577778899999999998 6 5555642110 0000000000000
Q ss_pred ---eeeeec-ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC--C--ceEEEeeecCCceEEEEEEcCCCCEEEEEE
Q 005325 53 ---VELIQD-LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR--Q--LSLKFERHLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 53 ---ieliqd-~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~--~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s 124 (702)
..-.+. -.+...|++++|+|+|++|+++|+.|+.|+||++. + ....+..+.....+..+.++|++.+|++++
T Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 168 (450)
T 2vdu_B 89 AKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD 168 (450)
T ss_dssp -----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence 000000 12455799999999999977999999999999998 5 223343332233466777888999999998
Q ss_pred CCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeE----EEEeecCCCCeEEEEEcCC---
Q 005325 125 ADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRF----LSSLNTQSPALNVVSRSKL--- 197 (702)
Q Consensus 125 ~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~----~~~l~~h~~~V~~l~~sp~--- 197 (702)
.++.|.+|++. ++.. +..+.+|...|++++|+|+
T Consensus 169 ~~g~v~~~~~~---------------------------------------~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 209 (450)
T 2vdu_B 169 KFGDVYSIDIN---------------------------------------SIPEEKFTQEPILGHVSMLTDVHLIKDSDG 209 (450)
T ss_dssp TTSEEEEEETT---------------------------------------SCCCSSCCCCCSEECSSCEEEEEEEECTTS
T ss_pred CCCcEEEEecC---------------------------------------CcccccccceeeecccCceEEEEEcCCCCC
Confidence 88888776543 2222 2356789999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcceeEEe-cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-
Q 005325 198 HGLIACGGEDGAVECFDMRMRSSAARIN-AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH- 275 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~~v~~l~-~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h- 275 (702)
+.+|++|+.|++|++||++++..+..+. .| ...|++++|+ + +.+|++|+.|+.|+|||+++++++.....
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGH------KHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTTCEEEECCCC------SSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred CcEEEEEcCCCcEEEEECCCCceeeeeecCC------CCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence 8999999999999999999998887743 44 6899999999 8 99999999999999999999987764321
Q ss_pred -----------------------cCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC--CCC---ceeEEecCCCCce
Q 005325 276 -----------------------MFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDP--ETG---ESMTSIEPTAGKI 326 (702)
Q Consensus 276 -----------------------~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~--~tg---~~l~~i~~h~~~I 326 (702)
.....|.+|+|+| ++..+++++ .++.|+||++ .++ ..+..+..| ..|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 282 SLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK---NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp HHHGGGCCTTSBC----------CBCCCEEEEEECS---SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred hhhhhhhhhcccccccccccccccceEEEEEEEEeC---CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 1245799999998 455666666 7999999999 565 677788886 899
Q ss_pred eEEEEEcCCCEEEEEeC-------CCcEEEEEcCC
Q 005325 327 NDVCVFKDSGLLLLALD-------CSQIPSYFIPD 354 (702)
Q Consensus 327 ~~v~~~p~~~~l~~a~~-------d~~I~~~~ip~ 354 (702)
.+++|+|+ +++++++. +..|.+|.+..
T Consensus 358 ~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCC-cEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999994 45554433 33478887654
No 90
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.5e-27 Score=256.97 Aligned_cols=285 Identities=8% Similarity=0.141 Sum_probs=210.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCce
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKH 138 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~ 138 (702)
.|...|+|++|||||++ ||+|+.++ ++||++......+..+... +..+.+.+++..+ ++++.|++|++|+.....
T Consensus 17 ~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp --CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEEEECSC--CCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeeeeecCC--eEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 47889999999999998 88888765 7899999866665555433 4445556666777 556778999999987332
Q ss_pred E--EEecCCCccceEEecCCCcEEEEecCCCEEEEECCCC-eEEEEeecCCCCeEEEEEcCCCCEEEE--EEcCCeEEEE
Q 005325 139 Y--SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQG-RFLSSLNTQSPALNVVSRSKLHGLIAC--GGEDGAVECF 213 (702)
Q Consensus 139 ~--~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g-~~~~~l~~h~~~V~~l~~sp~~~llas--gs~DG~V~iW 213 (702)
. .+..+. .+.....+.+.++++.++.|++||+.++ +.+..+.. ....+++++ .++++ |+.||.|++|
T Consensus 93 ~~~~~~~~~---~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 93 DVSRIKVDA---PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp EEEEEECSS---CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred EEEEEECCC---ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence 2 233333 3333334456566667899999999998 66666655 455666777 56666 5789999999
Q ss_pred ECCCCc----------------ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCe-EEEEEcCCCeEEEEeecc
Q 005325 214 DMRMRS----------------SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGK-VLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 214 D~~t~~----------------~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~-V~lwDlrs~~~l~~~~h~ 276 (702)
|+.++. .+..+..| ...|++|+|+|+ |.+|++|+.||+ |+|||+++++++......
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h------~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAH------TNPIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp ECCC------------------CCEEECCC------SSCEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred ECCCCCccccccccccccccCcccEEEEcc------CCceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 999865 25666666 799999999999 999999999998 999999999988754411
Q ss_pred -CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce--eEEe--------------------cC-CCCceeEEEEE
Q 005325 277 -FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES--MTSI--------------------EP-TAGKINDVCVF 332 (702)
Q Consensus 277 -~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~--l~~i--------------------~~-h~~~I~~v~~~ 332 (702)
+..+|++++|+| ++..+++++.|++|+|||+.++.. ...+ .. +..+...++|+
T Consensus 238 ~h~~~v~~~~~s~---~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 238 LDRADVVDMKWST---DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp TCCSCEEEEEECT---TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred CCCCcEEEEEECC---CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 278999999998 455566677899999999976431 1111 11 12234778999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCCCCCccCccc
Q 005325 333 KDSGLLLLALDCSQIPSYFIPDLGPTPKWCSPIE 366 (702)
Q Consensus 333 p~~~~l~~a~~d~~I~~~~ip~lg~ap~Wcsfld 366 (702)
|++..|++++.++.+.+|.+..-+...+||-.++
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 348 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFDDEMERWLIQMD 348 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEEEcCCCCceEEEeeC
Confidence 9999999999999999999887777777876554
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=7.6e-27 Score=244.07 Aligned_cols=264 Identities=12% Similarity=0.165 Sum_probs=204.7
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
+|.+..+++|+||++..| +. +.+++-..+...|++|+|+|+|++ ||+|+.|+.|++
T Consensus 38 ~lAvg~D~tV~iWd~~tg-~~----------------------~~~~~~~~~~~~V~~v~~~~~~~~-l~sgs~Dg~v~i 93 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSG-DI----------------------LQLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQL 93 (318)
T ss_dssp EEEEEETTEEEEEETTTC-CE----------------------EEEEECCSTTCCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred EEEEEeCCEEEEEECCCC-CE----------------------EEEEEecCCCCeEEEEEECCCCCE-EEEEECCCcEEE
Confidence 578888999999999988 21 123333357788999999999999 899999999999
Q ss_pred EEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-EecC---CCccceEEecCCCcEEEEe
Q 005325 90 YELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRIP---RMGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 90 wdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i~---~~~~~l~~~~~s~~llv~s 163 (702)
|++.+... .+..|... + ..++.++..+++++.++.+.+|........ ..+. .....+.+.+....+++++
T Consensus 94 w~~~~~~~~~~~~~h~~~--~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 94 WDVQQQKRLRNMTSHSAR--V--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp EETTTTEEEEEEECCSSC--E--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eecCCceeEEEecCccce--E--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 99998443 45555332 2 234455689999999999999988743222 2221 2223666777777799999
Q ss_pred cCCCEEEEECCCCeE----EEEeecCCCCeEEEEEcCCCC-EE--EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC
Q 005325 164 SSPELYRINLEQGRF----LSSLNTQSPALNVVSRSKLHG-LI--ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE 236 (702)
Q Consensus 164 ~d~~V~vwdl~~g~~----~~~l~~h~~~V~~l~~sp~~~-ll--asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~ 236 (702)
.++.|++||+.+++. ......|...|.+++++|.+. ++ ++|+.+++|++||............. ..
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~-------~~ 242 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------SQ 242 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS-------SC
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce-------ee
Confidence 999999999988753 345566788999999999873 33 45667899999999988877766655 78
Q ss_pred eEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC
Q 005325 237 VTALEFDSNGGFLMGVGS--STGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG 313 (702)
Q Consensus 237 Vtslafspd~g~~LasGs--~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg 313 (702)
|.+++|+|+ +..+++++ .||.|+|||+++++++. +.+| ..+|++|+|+| ++..+++++.|++|+|||+.+.
T Consensus 243 v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~sp---dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 243 VCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSP---DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECT---TSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcC---CCCEEEEEecCCeEEEEECCCC
Confidence 999999999 77777654 79999999999999887 6677 78999999998 5566777778999999999765
Q ss_pred c
Q 005325 314 E 314 (702)
Q Consensus 314 ~ 314 (702)
.
T Consensus 317 d 317 (318)
T 4ggc_A 317 D 317 (318)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=252.73 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=217.6
Q ss_pred cCCCceeEEEECCC---CCEEEEEEecCCcEEEEEcCC--ce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEE
Q 005325 60 WFETATTKIRETPD---GEFLIVSGIYPPQVKVYELRQ--LS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLH 132 (702)
Q Consensus 60 ~~~~~v~~i~~SpD---G~~llatGs~dg~I~vwdl~~--~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw 132 (702)
.|...|+||+|+|+ |++ |++|+.|+.|+||++.+ .. ..+..|... +..+.+++++.+|++++.|+.|.+|
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNF-LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP--VLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEE-EEEEETTSEEEEEEECTTSCEEEEEEEECSSC--EEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCceEEEEEcCCCCCceE-EEEECCCCcEEEEEcCCCCceeEEEeccccCC--EEEEEECcCCCEEEEEcCCCcEEEE
Confidence 47899999999999 577 99999999999999986 22 345556433 6677788899999999999999999
Q ss_pred ecCCceEE-Ee-cCCCccceEE--ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC
Q 005325 133 AKYGKHYS-LR-IPRMGRDMAY--NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG 208 (702)
Q Consensus 133 ~~~g~~~~-~~-i~~~~~~l~~--~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG 208 (702)
+....... +. ......++.+ .+....+++++.++.|++||+.+++.+..+..|. .+.++.+.+ ..+++++.++
T Consensus 114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~ 190 (368)
T 3mmy_A 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAER 190 (368)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGG
T ss_pred EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCC
Confidence 99843322 22 2223347777 4444558889999999999999999998888776 566666664 5888999999
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCE----EEEEeCCCeEEEEEcCCCe---EEE-EeeccC---
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFL----MGVGSSTGKVLIYDLRSSY---PIR-VKDHMF--- 277 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~----LasGs~DG~V~lwDlrs~~---~l~-~~~h~~--- 277 (702)
.+.+||++........... .+...+.++++.++ ... +++|+.||.|++||++... ++. +..|..
T Consensus 191 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKD-KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp CEEEEECSSSCEEEEECCC----SCSSCEEEEEEEEC-TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred cEEEEEeccccchhhhccc----cccCCCceEEEccc-CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 9999999876543332222 12456677777665 444 9999999999999999863 232 455521
Q ss_pred -------CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 278 -------DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 278 -------~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
..+|++++|+| ++..+++++.|+.|+|||+.+++++..+..|...|++++|+|++.+|++++.++....|
T Consensus 266 ~~~~~~~~~~v~~~~~sp---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHP---VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp --CCCEEECCEEEEEECT---TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccceEEEEEec---CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 12799999998 55667777789999999999999999999999999999999999999999998866555
Q ss_pred EcCC
Q 005325 351 FIPD 354 (702)
Q Consensus 351 ~ip~ 354 (702)
.+..
T Consensus 343 ~~~~ 346 (368)
T 3mmy_A 343 EFYN 346 (368)
T ss_dssp GGCC
T ss_pred cccC
Confidence 5443
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2e-26 Score=254.73 Aligned_cols=268 Identities=15% Similarity=0.174 Sum_probs=218.5
Q ss_pred CCCc-eeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 61 FETA-TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~-v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
|... ++| ++++|++ |++|+.|+.|++||+.+... .+..|.. . +..+.++ +..|++++.|++|++|+....
T Consensus 117 h~~~v~~~--~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~-v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 117 HDDHVITC--LQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTG-G-VWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp STTSCEEE--EEEETTE-EEEEETTSCEEEEETTTCCEEEECCCCSS-C-EEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred cCCCcEEE--EEEcCCE-EEEEECCCcEEEEECCCCcEEEEEcCCCC-C-EEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 5554 455 4557888 89999999999999987443 4555633 3 4444454 479999999999999998844
Q ss_pred eEEEecCCCccceEEec-CCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 138 HYSLRIPRMGRDMAYNS-WSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~-~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
.....+..+...+.... ....+++++.++.|++||+.+++.+..+..|...|++++| ++.+|++|+.||.|++||++
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence 33333333333222222 2345888999999999999999999999999999999999 67899999999999999999
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
+++.+..+..+ ...|++++| + +.+|++|+.||.|++||+++++++. +..| ...|.++.++ +..
T Consensus 268 ~~~~~~~~~~~------~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~-----~~~ 331 (445)
T 2ovr_B 268 TETCLHTLQGH------TNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELK-----DNI 331 (445)
T ss_dssp GTEEEEEECCC------SSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEE-----TTE
T ss_pred CCcEeEEecCC------CCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEEe-----CCE
Confidence 99999998877 689999999 5 8899999999999999999998877 5556 6789999886 456
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEP---TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
+++++.|+.|+|||+.+++++..+.. |...|++++|+ +.+|++++.|+.|.+|.+...
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 77778899999999999999999986 78899999985 578999999999999998653
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6.3e-28 Score=263.20 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=219.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc------eEEEeeecCCceEEEEEEcC-CCCEEEEEECCCeEEEEecC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL------SLKFERHLDSEIINFEVLAD-DYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~------~~~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~ 135 (702)
...+.++++|+...++++|+.+|.|+||++... ...+..|... +..+.+++ ++..|++++.|++|++|+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~--V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAP--VLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSC--EEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCC--EEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 345678999999887788999999999999662 1234556433 66666777 89999999999999999987
Q ss_pred Cc---------eEEEec-CCCccceEEecCCC-cEEEEecCCCEEEEECCCCeEEEEe--ecCCCCeEEEEEcCCCCEEE
Q 005325 136 GK---------HYSLRI-PRMGRDMAYNSWSC-DLLCAASSPELYRINLEQGRFLSSL--NTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 136 g~---------~~~~~i-~~~~~~l~~~~~s~-~llv~s~d~~V~vwdl~~g~~~~~l--~~h~~~V~~l~~sp~~~lla 202 (702)
.. ...+.. .....++.+++.+. .+++++.++.|++||+.+++.+..+ ..|...|++++|+|++.+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 32 122221 22333788888874 5788899999999999999999999 78999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcceeEE-ecccCCCCCCCCeEEEEEcCCCCCEEEEE---eCCCeEEEEEcCCCeE-EEEeeccC
Q 005325 203 CGGEDGAVECFDMRMRSSAARI-NAVAPAGDADQEVTALEFDSNGGFLMGVG---SSTGKVLIYDLRSSYP-IRVKDHMF 277 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~v~~l-~~~~~~~~~~~~Vtslafspd~g~~LasG---s~DG~V~lwDlrs~~~-l~~~~h~~ 277 (702)
+|+.||.|++||+++++.+..+ ..+. ...+.+++|+|+ +.+|++| +.|+.|+|||+++... +......+
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 9999999999999999988888 4551 234899999999 9999999 7999999999998653 33322222
Q ss_pred CCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCce-eEEecC--CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 278 DSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGES-MTSIEP--TAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~-l~~i~~--h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
...|.+++|+| ++..+++++ .|+.|+|||+.++++ +..+.. |...|.+++|+|++.++++ .++.+.+|.+.
T Consensus 267 ~~~v~~~~~s~---~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 267 SSGVLLPFFDP---DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp CSSCEEEEEET---TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred CCceeEEEEcC---CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 67899999998 445555555 699999999999874 444433 4689999999999887654 45588888775
Q ss_pred C
Q 005325 354 D 354 (702)
Q Consensus 354 ~ 354 (702)
.
T Consensus 342 ~ 342 (402)
T 2aq5_A 342 E 342 (402)
T ss_dssp T
T ss_pred C
Confidence 4
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5e-27 Score=259.23 Aligned_cols=258 Identities=16% Similarity=0.247 Sum_probs=201.6
Q ss_pred cceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC------------ceEEEeeecCCceEEEEEEcCCCC
Q 005325 51 RRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ------------LSLKFERHLDSEIINFEVLADDYS 118 (702)
Q Consensus 51 ~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~------------~~~~~~~h~~~~vv~~~~ls~dg~ 118 (702)
.++.+.+.+.|+..|++++|+|++..+||+|+.+|.|+||++.. ....+..|.. . +..+.+++++.
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~-v~~l~~~~~~~ 194 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-E-GYGLSWNPNLN 194 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-C-CCCEEECTTST
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-C-eEEEEeCCCCC
Confidence 35667778889999999999998655599999999999999974 2234455533 2 34445566666
Q ss_pred -EEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-
Q 005325 119 -KLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK- 196 (702)
Q Consensus 119 -~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp- 196 (702)
.|++++.|+.|.+|++...... ..+ + .....+..|...|++++|+|
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~-------------------------~~~--~-----~~~~~~~~h~~~v~~v~~~p~ 242 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKE-------------------------HRV--I-----DAKNIFTGHTAVVEDVAWHLL 242 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBG-------------------------GGE--E-----ECSEEECCCSSCEEEEEECSS
T ss_pred CeEEEEeCCCeEEEEeCCCCCCC-------------------------Cce--e-----ccceeecCCCCCEeeeEEeCC
Confidence 7788888888877766521000 000 0 01345668999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC---cceeEEecccCCCCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcCC-CeEEE
Q 005325 197 LHGLIACGGEDGAVECFDMRMR---SSAARINAVAPAGDADQEVTALEFDSNGGF-LMGVGSSTGKVLIYDLRS-SYPIR 271 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~---~~v~~l~~~~~~~~~~~~Vtslafspd~g~-~LasGs~DG~V~lwDlrs-~~~l~ 271 (702)
.+.+|++|+.||.|++||+++. ..+..+..| ...|++|+|+|+ +. +|++|+.||.|+|||+++ ..++.
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~i~~~p~-~~~~l~tg~~dg~v~vwd~~~~~~~~~ 315 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH------TAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLKLKLH 315 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC------SSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC------CCCeEEEEeCCC-CCCEEEEEeCCCeEEEEeCCCCCCCeE
Confidence 5689999999999999999987 567777766 689999999999 65 799999999999999998 45555
Q ss_pred -EeeccCCCCeEEEEEeeccCCCCC-eEEEeCCCEEEEEeCCC--------------CceeEEecCCCCceeEEEEEcCC
Q 005325 272 -VKDHMFDSPIVDIKWHQSINTERP-KLITTDNHIVRIWDPET--------------GESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 272 -~~~h~~~~~I~sl~fsp~~~~~~~-ll~ss~Dg~V~IWd~~t--------------g~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
+..| ..+|++|+|+| ++.. +++++.|+.|+|||+.. ..++..+.+|...|++++|+|++
T Consensus 316 ~~~~h--~~~v~~i~~sp---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 316 SFESH--KDEIFQVQWSP---HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp EEECC--SSCEEEEEECS---SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred EeecC--CCCEEEEEECC---CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 5556 68999999998 4445 45556899999999986 36778888999999999999999
Q ss_pred C-EEEEEeCCCcEEEEEcCC
Q 005325 336 G-LLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 336 ~-~l~~a~~d~~I~~~~ip~ 354 (702)
. +|++++.++.|.+|.++.
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TTEEEEEETTSEEEEEEECH
T ss_pred CCEEEEEECCCCEEEeEccc
Confidence 8 999999999999998764
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.8e-26 Score=249.36 Aligned_cols=328 Identities=9% Similarity=0.031 Sum_probs=203.8
Q ss_pred cc-CCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECC-CCCEEEEE
Q 005325 3 SR-GGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETP-DGEFLIVS 80 (702)
Q Consensus 3 s~-dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~Sp-DG~~llat 80 (702)
+| ||. +++.++.++.|+||++..+ .......... ...+.....-.|...|++++|+| ++.+ |++
T Consensus 52 s~~~~~-~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s 117 (408)
T 4a11_B 52 EPVEGR-YMLSGGSDGVIVLYDLENS-SRQSYYTCKA-----------VCSIGRDHPDVHRYSVETVQWYPHDTGM-FTS 117 (408)
T ss_dssp CTTTCC-EEEEEETTSCEEEEECCCC-SSSSCEEECE-----------EEEECTTCTTCCSSCEEEEEECTTCTTC-EEE
T ss_pred ecCCCC-EEEEEcCCCeEEEEECCCC-cccceEeccc-----------cccccccccccCCCcEEEEEEccCCCcE-EEE
Confidence 56 666 3577788999999999987 4332221100 00000001123788999999999 5566 899
Q ss_pred EecCCcEEEEEcCCceEEEeeecCCceEEEEEEcC---CCCEEEEEECCCeEEEEecCCce--EEEec-CCCccceEEec
Q 005325 81 GIYPPQVKVYELRQLSLKFERHLDSEIINFEVLAD---DYSKLAFLCADRSISLHAKYGKH--YSLRI-PRMGRDMAYNS 154 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~---dg~~Las~s~D~~I~iw~~~g~~--~~~~i-~~~~~~l~~~~ 154 (702)
|+.|+.|++||+.+............+. .+.+++ ++..+++++.|+.|.+|+..... ..+.. .....++.+.+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred EeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 9999999999999855433333334333 444444 55599999999999999987322 22221 22234788888
Q ss_pred CCCc-EEEEecCCCEEEEECCCCe-EEEEe---------------ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 155 WSCD-LLCAASSPELYRINLEQGR-FLSSL---------------NTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 155 ~s~~-llv~s~d~~V~vwdl~~g~-~~~~l---------------~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
.+.. +++++.++.|++||+.++. .+..+ ..|...|++++|+|++.+|++|+.||.|++||+.+
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 8876 7788999999999998765 33333 56888999999999999999999999999999998
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCe
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPK 296 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~l 296 (702)
+.....+..+..... ...+........ +..+++++.++.|++||+.+++++. +..| ..+|++++|+| ++..+
T Consensus 277 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~---~~~~l 349 (408)
T 4a11_B 277 GENTLVNYGKVCNNS-KKGLKFTVSCGC-SSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTVDCCVFQS---NFQEL 349 (408)
T ss_dssp CCBCCCCCCCCCCCC-SSCCCCEECCSS-SSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCEEEEEEET---TTTEE
T ss_pred Cccceeccccccccc-cccceeEEecCC-CceEEEEecCCEEEEEECcCCcceeeeccC--CCeEEEEEEcC---CCCEE
Confidence 876555443311111 122222222333 5677888899999999999999887 5556 68999999998 44556
Q ss_pred EEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEc-CCCEEEEEeCCCcEEEEEcCCC
Q 005325 297 LITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFK-DSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 297 l~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++++.|+.|+|||+.+++++.....+... ..+.| ....+..++.++.+.+|..|..
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp EEEETTSCEEEEEECC--------------------------------------------
T ss_pred EEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCccc
Confidence 66678999999999999887665552221 23334 3445566778899999988864
No 97
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=276.05 Aligned_cols=259 Identities=8% Similarity=0.050 Sum_probs=192.4
Q ss_pred ccCCCceeEEEECCCC---------CEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeE
Q 005325 59 LWFETATTKIRETPDG---------EFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSI 129 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG---------~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I 129 (702)
+.+++.|.+|+|+|++ ++ ||+|+.+... . ..+|++..|++++.|++|
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~-LAv~~~~~~~----------------~-------~~~~~~~~laS~s~D~tI 185 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQY-LAVAVSQYMD----------------E-------PLNEHLEMFDKEKHSSCI 185 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEE-EEEEEEC-----------------------------------------CEEE
T ss_pred EECCCceeEEEecccCCCCccCcCCeE-EEEEEecccC----------------C-------ccchhhhhhccCCCCceE
Confidence 3467899999999987 66 8888766420 0 126788899999999999
Q ss_pred EEEecCC-ce-E----EEecC-CCccceEEecC------CCcEEEEecCCCEEEEECCCCeE-----------EEEeecC
Q 005325 130 SLHAKYG-KH-Y----SLRIP-RMGRDMAYNSW------SCDLLCAASSPELYRINLEQGRF-----------LSSLNTQ 185 (702)
Q Consensus 130 ~iw~~~g-~~-~----~~~i~-~~~~~l~~~~~------s~~llv~s~d~~V~vwdl~~g~~-----------~~~l~~h 185 (702)
+||+..+ .. . .+..+ .....+.|+|. ...|++++.|+.|.+||+.++.. ...+.+|
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h 265 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC
Confidence 9998763 21 1 12222 23447888875 23477788999999999987642 2367789
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEE--EEcCCCC-CEEEEEeCCCeEEE
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTAL--EFDSNGG-FLMGVGSSTGKVLI 261 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtsl--afspd~g-~~LasGs~DG~V~l 261 (702)
...|+|++|+|. ..|++|+.||+|++||++++. +...+..| ...|++| +|+|+ | .+||+|+.|++|+|
T Consensus 266 ~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H------~~~V~sv~~~~s~~-g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 266 DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH------DSYILSVSTAYSDF-EDTVVSTVAVDGYFYI 337 (524)
T ss_dssp TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECS------SSCEEEEEEECCTT-SCCEEEEEETTSEEEE
T ss_pred CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecc------cccEEEEEEEcCCC-CCeEEEEeccCCeEEE
Confidence 999999999986 489999999999999999764 45567777 7899999 57887 7 89999999999999
Q ss_pred EEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 262 YDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 262 wDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
||+++++++. +..|.....|.+|+|+| ++..+++++.|++|+|||+.++.++..+.+|...|++|+|+|++.+|++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp---~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCP---QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEET---TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EECCCCCcccccccccccCcccceEeCC---CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999877543 45564334689999998 3445566668999999999999998889999999999999999999999
Q ss_pred EeCCCcEEEEEc
Q 005325 341 ALDCSQIPSYFI 352 (702)
Q Consensus 341 a~~d~~I~~~~i 352 (702)
|+.|+.|.+|.+
T Consensus 415 gs~Dgtv~lwd~ 426 (524)
T 2j04_B 415 GSADGSLIITNA 426 (524)
T ss_dssp EETTTEEECCBS
T ss_pred EECCCEEEEEec
Confidence 999999999975
No 98
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=7.2e-25 Score=237.02 Aligned_cols=275 Identities=9% Similarity=0.051 Sum_probs=214.6
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKV 89 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~v 89 (702)
++..+.++.|+||++..+ ++++.+.....+.+++|+|+|++|+++++.++.|++
T Consensus 5 ~vs~~~d~~v~v~d~~~~--------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 58 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSN--------------------------KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (391)
T ss_dssp EEEETTTTEEEEEETTTT--------------------------EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEcCCCCEEEEEECCCC--------------------------eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence 455567788999999887 223334455668999999999997789989999999
Q ss_pred EEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEecCCceEE--EecCCCccceEEecCCCcE-EEEecC
Q 005325 90 YELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDL-LCAASS 165 (702)
Q Consensus 90 wdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~l-lv~s~d 165 (702)
||+.+........... .+..+.+++++..|++++ .++.|.+|+....... +.......++.+.+.+..+ ++++.+
T Consensus 59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCC
Confidence 9998855433322222 366677899999886555 5799999999843332 2333334478888877777 455568
Q ss_pred CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC
Q 005325 166 PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI-ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll-asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
+.|++||+.+++.+..+..|. .+.+++|+|++..| ++++.++.|++||+++++.+..+..+ ..+.+++|+|
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~ 209 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------AAPSGIAVNP 209 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-------SEEEEEEECT
T ss_pred CEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-------CCccceEECC
Confidence 899999999999998887765 57999999999876 67778999999999999888877765 6899999999
Q ss_pred CCCCEEEEEe---CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE-eCCCEEEEEeCCCCceeEEec
Q 005325 245 NGGFLMGVGS---STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT-TDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 245 d~g~~LasGs---~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s~Dg~V~IWd~~tg~~l~~i~ 320 (702)
+ +.+|++++ .++.|.+||+.+++++..... ...+.+++|+| ++..++++ +.|+.|++||+.+++.+..+.
T Consensus 210 ~-g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~---dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 210 E-GTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTP---DGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp T-SSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred C-CCEEEEEecCcCCCcEEEEECCCCeEEEEEec--CCCccEEEEcc---CCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 9 99888887 689999999999988775444 34689999998 44455455 479999999999999999887
Q ss_pred CCCCc
Q 005325 321 PTAGK 325 (702)
Q Consensus 321 ~h~~~ 325 (702)
.|..+
T Consensus 284 ~~~~~ 288 (391)
T 1l0q_A 284 VGKNP 288 (391)
T ss_dssp CSSSE
T ss_pred CCcCC
Confidence 76554
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=7.1e-26 Score=249.97 Aligned_cols=275 Identities=13% Similarity=0.220 Sum_probs=198.8
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCCCCEEEEEEe
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpDG~~llatGs 82 (702)
.||. ++++++.++.|+||++..+ +. +..+ .|...|++++| ++.+ |++|+
T Consensus 141 ~d~~-~l~~g~~dg~i~iwd~~~~-~~-------------------------~~~~~~h~~~v~~l~~--~~~~-l~sg~ 190 (435)
T 1p22_A 141 YDDQ-KIVSGLRDNTIKIWDKNTL-EC-------------------------KRILTGHTGSVLCLQY--DERV-IITGS 190 (435)
T ss_dssp CCSS-EEEEEESSSCEEEEESSSC-CE-------------------------EEEECCCSSCEEEEEC--CSSE-EEEEE
T ss_pred ECCC-EEEEEeCCCeEEEEeCCCC-eE-------------------------EEEEcCCCCcEEEEEE--CCCE-EEEEc
Confidence 3555 3577788999999999877 21 1112 36788999998 7787 89999
Q ss_pred cCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEE--EecCCCcc---ceEEec
Q 005325 83 YPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYS--LRIPRMGR---DMAYNS 154 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~--~~i~~~~~---~l~~~~ 154 (702)
.|+.|++||+.+... .+..|. .. +..+.++ +..|++++.|+.|.+|+... .... ..+..+.. ++.+
T Consensus 191 ~dg~i~vwd~~~~~~~~~~~~h~-~~-v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNTLIHHC-EA-VLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp TTSCEEEEESSSCCEEEEECCCC-SC-EEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred CCCeEEEEECCCCcEEEEEcCCC-Cc-EEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 999999999987443 445553 33 4444454 46999999999999999873 2211 22222222 3333
Q ss_pred CCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCC
Q 005325 155 WSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDAD 234 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~ 234 (702)
....+++++.++.|++||+.+++.+..+..|...|.+++|+ +.+|++|+.||+|++||++++.++..+..| .
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------~ 336 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH------E 336 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC------S
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC------c
Confidence 34458888999999999999999999999999999999995 679999999999999999999999999887 7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe---------EEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCE
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY---------PIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHI 304 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~---------~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~ 304 (702)
..|++++| + +.+|++|+.||.|+|||++++. ++. +..| ..+|++++|. +..+++++.|+.
T Consensus 337 ~~v~~~~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~-----~~~l~s~s~Dg~ 406 (435)
T 1p22_A 337 ELVRCIRF--D-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFD-----EFQIVSSSHDDT 406 (435)
T ss_dssp SCEEEEEC--C-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEEC-----SSCEEECCSSSE
T ss_pred CcEEEEEe--c-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEeC-----CCEEEEEeCCCE
Confidence 89999999 4 7899999999999999997654 444 5666 6799999995 566777788999
Q ss_pred EEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 305 VRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 305 V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
|+|||+.+........+ ..++..+.|.+
T Consensus 407 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~ 434 (435)
T 1p22_A 407 ILIWDFLNDPAAQAEPP-RSPSRTYTYIS 434 (435)
T ss_dssp EEEEC------------------------
T ss_pred EEEEECCCCCCcccCCC-CCCccceeeec
Confidence 99999998766555544 45566665544
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.6e-25 Score=242.73 Aligned_cols=284 Identities=10% Similarity=0.032 Sum_probs=225.1
Q ss_pred eeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEE-------eeecCCceEEEEEEcCCCCEEEEEEC
Q 005325 53 VELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKF-------ERHLDSEIINFEVLADDYSKLAFLCA 125 (702)
Q Consensus 53 ieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~-------~~h~~~~vv~~~~ls~dg~~Las~s~ 125 (702)
...+..+..+..+.+++|+|++ .++++++.++.|++||+.+..... ..| .. .+..+.+++++..+++++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 113 HRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK-LG-FVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp EEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTT-CC-EEEEEEEGGGTEEEEEEGG
T ss_pred ceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCccccccc-CC-ceeEEEEcCCCEEEEEECC
Confidence 3455666667778899999955 448888899999999998744332 123 22 3555667899999999999
Q ss_pred CCeEEEEecCCceEEEecCC---CccceEEecCCCcEEEEe-cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE
Q 005325 126 DRSISLHAKYGKHYSLRIPR---MGRDMAYNSWSCDLLCAA-SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI 201 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~~i~~---~~~~l~~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll 201 (702)
|+.|.+|+.........+.. ...++++.+....+++++ .++.|++||+.+++.+..+..+. .+.+++|+|++.+|
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l 268 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKEL 268 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEE
Confidence 99999999874333222322 233788888777776666 68899999999999988887654 59999999999999
Q ss_pred EEEE--------cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 202 ACGG--------EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGF-LMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 202 asgs--------~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~-~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
++++ .||.|++||+.+++.+..+... ..+.+++|+|+ +. .+++++.++.|.+||+.+++++..
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~-g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-------GNKRHIVSGNT-ENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-------ECEEEEEECSS-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccCC-------CCcceEEECCC-CCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 9888 4889999999998887776554 68899999999 76 556778999999999999988876
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEEeC---------------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCE
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLITTD---------------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGL 337 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~ss~---------------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~ 337 (702)
..+ ...+.+++|+| ++..+++++. ||.|++||+.+++.+..+.. ...+.+++|+|++.+
T Consensus 341 ~~~--~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 341 IPV--FDKPNTIALSP---DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEC--SSSEEEEEECT---TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCE
T ss_pred ecC--CCCCCeEEEcC---CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCE
Confidence 666 57899999998 3444555554 46999999999999998887 668999999999999
Q ss_pred EEEEeC-CCcEEEEEcCC
Q 005325 338 LLLALD-CSQIPSYFIPD 354 (702)
Q Consensus 338 l~~a~~-d~~I~~~~ip~ 354 (702)
|++++. ++.|.+|.+..
T Consensus 415 l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 415 LVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEETTTTEEEEEEETT
T ss_pred EEEEECCCCeEEEEEecC
Confidence 998875 99999998753
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=254.82 Aligned_cols=272 Identities=15% Similarity=0.158 Sum_probs=210.8
Q ss_pred EECCCCCEEEEEEecCCcEEEEEcCC-ceEEE-eeecCCceEEEEEEcC-CCCEEEEEECCCeEEEEecCC--------c
Q 005325 69 RETPDGEFLIVSGIYPPQVKVYELRQ-LSLKF-ERHLDSEIINFEVLAD-DYSKLAFLCADRSISLHAKYG--------K 137 (702)
Q Consensus 69 ~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~-~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~g--------~ 137 (702)
.|+|+++. ++++. .|+... +...+ ..|... +..+.+++ ++.+|++++.|++|+||+... .
T Consensus 34 ~f~~~~~~-~~~~~------~w~~~g~~~~~~~~~h~~~--V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNLRGKLIATLMENEPNS--ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGCCCCEEEEECTTTTSC--EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCcccc-ccccc------cccccceEEeeeccCCCCc--eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 47899988 55544 377555 33345 444333 66667788 999999999999999998753 1
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECC---CCeEEEEeec------------CCCCeEEEE--EcCCCCE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLE---QGRFLSSLNT------------QSPALNVVS--RSKLHGL 200 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~---~g~~~~~l~~------------h~~~V~~l~--~sp~~~l 200 (702)
...........++.+.+....+++++.++.|++||+. +++.+..+.. +...+.++. ++|++.+
T Consensus 105 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 105 SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 2222334444588888877779999999999999995 5555443332 445677776 5678999
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCC
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSP 280 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~ 280 (702)
|++|+.||.|++||+++++++..+..+ .|...|++++|+|+ +.+|++|+.||.|+|||+++++++......+..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~----~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 259 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENS----PRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP 259 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECC----GGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccC----CCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence 999999999999999999999999872 12689999999999 9999999999999999999999887543223679
Q ss_pred eEEEEEeeccCCCCCeEE-EeCCCEEEEEeCCCCceeEEecC--------------------------CCCceeEEEEEc
Q 005325 281 IVDIKWHQSINTERPKLI-TTDNHIVRIWDPETGESMTSIEP--------------------------TAGKINDVCVFK 333 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd~~tg~~l~~i~~--------------------------h~~~I~~v~~~p 333 (702)
|++++|+|.++.++.+++ ++.|+.|+|||+.+++.+..+.. |...|++++|+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS- 338 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence 999999885544554554 55799999999999998877764 44568899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 005325 334 DSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 334 ~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++.+|++++.|+.|.+|.+...
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCG
T ss_pred CceEEEecCCCCeEEEEECCCc
Confidence 6789999999999999998653
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=247.73 Aligned_cols=291 Identities=12% Similarity=0.172 Sum_probs=205.0
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCC-----ccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCC--C
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSV-----AAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDG--E 75 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~sl-----p~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG--~ 75 (702)
|+||.. ++.++.++.|+||++..+ ... +.|.. ...+.. ....+..+..+.+...|++++|+|++ .
T Consensus 37 s~~g~~-la~g~~dg~v~iw~~~~~-~~~~~~~~~~~~~---~~~~~~---h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 37 NHSGEL-LATGDKGGRVVIFQQEQE-NKIQSHSRGEYNV---YSTFQS---HEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp CSSSSE-EEEEETTSEEEEEEECC------CCCCCCEEE---EEEEEC---CCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CCCCCE-EEEEcCCCeEEEEEecCC-CCCCcccccceeE---eccccc---ccccccccccccccCceEEEEEcCCCCcc
Confidence 677773 566778889999999987 311 01100 000000 00001111122223889999999998 6
Q ss_pred EEEEEEecCCcEEEEEcCCceE-----------------------------------------EE-eeecCCceEEEEEE
Q 005325 76 FLIVSGIYPPQVKVYELRQLSL-----------------------------------------KF-ERHLDSEIINFEVL 113 (702)
Q Consensus 76 ~llatGs~dg~I~vwdl~~~~~-----------------------------------------~~-~~h~~~~vv~~~~l 113 (702)
+ |++|+.|+.|++|++..... .+ ..|.. .+..+.+
T Consensus 109 ~-l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~ 185 (447)
T 3dw8_B 109 Q-FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY--HINSISI 185 (447)
T ss_dssp E-EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS--CCCEEEE
T ss_pred e-EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc--ceEEEEE
Confidence 6 88999999999999875222 11 23432 2566668
Q ss_pred cCCCCEEEEEECCCeEEEEecC-C-ceEEEe------c---CCCccceEEecCC-CcEEEEecCCCEEEEECCCCeE---
Q 005325 114 ADDYSKLAFLCADRSISLHAKY-G-KHYSLR------I---PRMGRDMAYNSWS-CDLLCAASSPELYRINLEQGRF--- 178 (702)
Q Consensus 114 s~dg~~Las~s~D~~I~iw~~~-g-~~~~~~------i---~~~~~~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~--- 178 (702)
++++..|+++ .|+.|++|++. + ....+. + .....++.+++.+ ..+++++.++.|++||+.++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 8899999998 89999999998 2 222211 1 1123378888887 5688899999999999999887
Q ss_pred -EEEeecCCC------------CeEEEEEcCCCCEEEEEEcCCeEEEEECCC-CcceeEEecccCCCC---------CCC
Q 005325 179 -LSSLNTQSP------------ALNVVSRSKLHGLIACGGEDGAVECFDMRM-RSSAARINAVAPAGD---------ADQ 235 (702)
Q Consensus 179 -~~~l~~h~~------------~V~~l~~sp~~~llasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~---------~~~ 235 (702)
+..+..|.. .|++++|+|++.+|++|+. +.|++||+++ +.++..+..|..... .-.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 778888876 8999999999999999999 9999999997 888888887721000 001
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-------------------------------cCCCCeEEE
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-------------------------------MFDSPIVDI 284 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-------------------------------~~~~~I~sl 284 (702)
.+..++|+|+ +.+|++|+.||.|+|||+.+++.+.+..| .+...|..+
T Consensus 344 ~~~~~~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGS-DSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTT-SSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCC-CCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 1445999999 99999999999999999999887765433 224578999
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
+|+| .+.+|+++..+.+.||...
T Consensus 423 ~~~p----~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 423 AWHP----KENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EECS----SSSEEEEECSSCEEEEECC
T ss_pred EECC----CCCEEEEEecceeeeeccc
Confidence 9998 6667776665668888754
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=4.8e-26 Score=248.29 Aligned_cols=266 Identities=11% Similarity=0.082 Sum_probs=205.9
Q ss_pred EEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCceeEEEECC-CCCEEEEEEecCCcEEEE
Q 005325 13 STLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETATTKIRETP-DGEFLIVSGIYPPQVKVY 90 (702)
Q Consensus 13 ~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~v~~i~~Sp-DG~~llatGs~dg~I~vw 90 (702)
++.++.|.||++... ..++. .+.. ..|...|++++|+| ++.+ |++|+.|+.|+||
T Consensus 53 ~~~~g~i~v~~~~~~-~~~~~---------------------~~~~~~~h~~~V~~~~~~p~~~~~-l~s~s~dg~v~vw 109 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKT-GRVDK---------------------NVPLVCGHTAPVLDIAWCPHNDNV-IASGSEDCTVMVW 109 (402)
T ss_dssp CSSSCCEEEEETTCC-EECCT---------------------TCCCBCCCSSCEEEEEECTTCTTE-EEEEETTSEEEEE
T ss_pred EcCCCEEEEEECccC-CCCCC---------------------CCceEecCCCCEEEEEeCCCCCCE-EEEEeCCCeEEEE
Confidence 456788999999654 11100 0111 24788999999999 8887 9999999999999
Q ss_pred EcCCc---------eEEEeeecCCceEEEEEEcCCC-CEEEEEECCCeEEEEecCCceEEEec--CC---CccceEEecC
Q 005325 91 ELRQL---------SLKFERHLDSEIINFEVLADDY-SKLAFLCADRSISLHAKYGKHYSLRI--PR---MGRDMAYNSW 155 (702)
Q Consensus 91 dl~~~---------~~~~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~~~g~~~~~~i--~~---~~~~l~~~~~ 155 (702)
++.+. ...+..|... +..+.+++++ ..|++++.|+.|.+|++........+ .. ...++.+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKR--VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSC--EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred EccCCCCccccCCceEEecCCCCe--EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 99874 3456667444 6677788887 69999999999999999854433333 22 2337888887
Q ss_pred CCcEEEEecCCCEEEEECCCCeEEEEe-ecCCCC-eEEEEEcCCCCEEEEE---EcCCeEEEEECCCCcc-eeEEecccC
Q 005325 156 SCDLLCAASSPELYRINLEQGRFLSSL-NTQSPA-LNVVSRSKLHGLIACG---GEDGAVECFDMRMRSS-AARINAVAP 229 (702)
Q Consensus 156 s~~llv~s~d~~V~vwdl~~g~~~~~l-~~h~~~-V~~l~~sp~~~llasg---s~DG~V~iWD~~t~~~-v~~l~~~~~ 229 (702)
+..+++++.++.|++||+.+++.+..+ ..|... +.+++|+|++.+|++| +.|+.|++||+++... +......
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 265 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-- 265 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc--
Confidence 777999999999999999999999988 788775 8999999999999999 7899999999998664 4444322
Q ss_pred CCCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCCeE-EE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEE
Q 005325 230 AGDADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLRSSYP-IR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVR 306 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlrs~~~-l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~ 306 (702)
+...|.+++|+|+ +.+|+ +|+.||.|++||+.++++ +. +..|.+..+|.+++|+| ++.++++ .++.++
T Consensus 266 ---~~~~v~~~~~s~~-~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp----~~~~~~s-~~~~~~ 336 (402)
T 2aq5_A 266 ---TSSGVLLPFFDPD-TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP----KRGLEVN-KCEIAR 336 (402)
T ss_dssp ---CCSSCEEEEEETT-TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC----GGGSCGG-GTEEEE
T ss_pred ---CCCceeEEEEcCC-CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec----cccccee-cceeEE
Confidence 2578999999999 88886 556799999999999874 33 45554468999999998 5555544 566999
Q ss_pred EEeCCCCc
Q 005325 307 IWDPETGE 314 (702)
Q Consensus 307 IWd~~tg~ 314 (702)
+|++.++.
T Consensus 337 ~~~l~~~~ 344 (402)
T 2aq5_A 337 FYKLHERK 344 (402)
T ss_dssp EEEEETTE
T ss_pred EEEcCCCc
Confidence 99998754
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=6.4e-26 Score=245.22 Aligned_cols=236 Identities=9% Similarity=0.109 Sum_probs=175.6
Q ss_pred CCCceeEEEECCCCCEEEEEE-----------ecCCcEEEEEcCC--ceEEEeee-------cCCceEEEEEEcCCCCEE
Q 005325 61 FETATTKIRETPDGEFLIVSG-----------IYPPQVKVYELRQ--LSLKFERH-------LDSEIINFEVLADDYSKL 120 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatG-----------s~dg~I~vwdl~~--~~~~~~~h-------~~~~vv~~~~ls~dg~~L 120 (702)
++..+.|++++ +.. +++| +.++.|++|++.. ....+... .....+.++.|||||++|
T Consensus 72 ~~~~v~s~~~~--~~~-~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 72 NDDSPTAIDAS--KGI-ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp TSCCCCEEEEE--TTE-EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred CCCceEEEEeC--CCE-EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE
Confidence 45677777654 455 4554 4577899999865 22222111 111236778899999998
Q ss_pred EEEE--CCCeEEEEecCCceEE--EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEE--EeecCCCCeEEEEE
Q 005325 121 AFLC--ADRSISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLS--SLNTQSPALNVVSR 194 (702)
Q Consensus 121 as~s--~D~~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~--~l~~h~~~V~~l~~ 194 (702)
++++ .|++|+||++...... +.......+++|.|.+..++++ +++.+.+|+..++..+. ....|...|++++|
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~-s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f 227 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI-TGSSLEVISTVTGSCIARKTDFDKNWSLSKINF 227 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE-CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec-cceeEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence 7655 6899999999854333 3333344588888766555554 57788888888887654 34568889999999
Q ss_pred cCCCCEEEEEEcCC----eEEEEECCCCcc----eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 005325 195 SKLHGLIACGGEDG----AVECFDMRMRSS----AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 195 sp~~~llasgs~DG----~V~iWD~~t~~~----v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs 266 (702)
+|++.++++++.|+ .|.+||+..... ...+..+ ...|++|+|+|+ |.+||+|+.|++|+|||+++
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR------FKGITSMDVDMK-GELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS------CSCEEEEEECTT-SCEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC------CCCeEeEEECCC-CCceEEEcCCCEEEEEECCC
Confidence 99999999999887 688999876543 2334444 689999999999 99999999999999999999
Q ss_pred CeEEEE--eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 267 SYPIRV--KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 267 ~~~l~~--~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
++++.. ..| ..+|++|+|+| ++..|++++.|++|+|||+..
T Consensus 301 ~~~~~~~~~gH--~~~V~~v~fSp---dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 301 LSMSKIFKQAH--SFAITEVTISP---DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TEEEEEETTSS--SSCEEEEEECT---TSCEEEEEETTSEEEEEECCT
T ss_pred CcEEEEecCcc--cCCEEEEEECC---CCCEEEEEeCCCeEEEEEcCC
Confidence 998874 356 78999999998 455555666899999999964
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=248.27 Aligned_cols=238 Identities=9% Similarity=0.030 Sum_probs=185.4
Q ss_pred EECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCcc
Q 005325 69 RETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR 148 (702)
Q Consensus 69 ~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~ 148 (702)
.+.+|+.+ |++|+.|+.|++||+.+......... . .+..+.++|+ +++++.|++|++|+..+
T Consensus 43 ~~~~d~~~-l~sg~~Dg~v~iwd~~~~~~~~~~~~-~-~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------ 104 (343)
T 3lrv_A 43 SMYYDKWV-CMCRCEDGALHFTQLKDSKTITTITT-P-NPRTGGEHPA---IISRGPCNRLLLLYPGN------------ 104 (343)
T ss_dssp SSSEEEEE-EEEEEETTEEEEEEESSSSCEEEEEE-E-CCCTTCCCCS---EEEECSTTEEEEEETTT------------
T ss_pred hhcCCCCE-EEEECCCCcEEEEECCCCcEEEEEec-C-CceeeeeCCc---eEEecCCCeEEEEEccC------------
Confidence 44567777 99999999999999987433222111 1 1223335554 99999999999998753
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee-cCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEECCCCcceeEEe
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN-TQSPALNVVSRSK--LHGLIACGGEDGAVECFDMRMRSSAARIN 225 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~-~h~~~V~~l~~sp--~~~llasgs~DG~V~iWD~~t~~~v~~l~ 225 (702)
.+.+||+.+++.+..+. .|...|.+++|+| ++.+|++|+.||+|++||+++++.+..+.
T Consensus 105 ------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 166 (343)
T 3lrv_A 105 ------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS 166 (343)
T ss_dssp ------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred ------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 45679999998776665 6778899999999 99999999999999999999998866664
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEE-E-Eee-ccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPI-R-VKD-HMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l-~-~~~-h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
.+ +...|++++|+|+ +.+|++|+.||.|+|||+++++.+ . +.. | ..+|++|+|+| ++.+++++.+
T Consensus 167 ~~-----~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~l~fs~----~g~~l~s~~~ 234 (343)
T 3lrv_A 167 AK-----SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDE--EAKIKEVKFAD----NGYWMVVECD 234 (343)
T ss_dssp CC-----SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCT--TSCEEEEEECT----TSSEEEEEES
T ss_pred cC-----CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccC--CCCEEEEEEeC----CCCEEEEEeC
Confidence 44 2467999999999 999999999999999999998866 3 444 5 78999999998 5555555546
Q ss_pred CEEEEEeCCCCceeEEecC---CCCcee--EEEEEcCCCEEEEEeC-CCcEEEEEcCC
Q 005325 303 HIVRIWDPETGESMTSIEP---TAGKIN--DVCVFKDSGLLLLALD-CSQIPSYFIPD 354 (702)
Q Consensus 303 g~V~IWd~~tg~~l~~i~~---h~~~I~--~v~~~p~~~~l~~a~~-d~~I~~~~ip~ 354 (702)
+.|+|||+++++.+..+.. |...+. +++|+|++.+|++++. ++.+.+|.+..
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 6999999999877665554 445555 5999999999999998 99999998754
No 106
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.8e-25 Score=233.98 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=177.7
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC--CCEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD--GEFLI 78 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD--G~~ll 78 (702)
.|+||.. +++++.++.|+||++..+ .. .++..+ .|...|++++|+|+ |++ |
T Consensus 17 ~s~~g~~-las~s~D~~v~iw~~~~~-~~-----------------------~~~~~l~gH~~~V~~v~~s~~~~g~~-l 70 (297)
T 2pm7_B 17 MDYYGKR-MATCSSDKTIKIFEVEGE-TH-----------------------KLIDTLTGHEGPVWRVDWAHPKFGTI-L 70 (297)
T ss_dssp ECTTSSE-EEEEETTSCEEEEEBCSS-CB-----------------------CCCEEECCCSSCEEEEEECCGGGCSE-E
T ss_pred ECCCCCE-EEEEeCCCEEEEEecCCC-Cc-----------------------EEEEEEccccCCeEEEEecCCCcCCE-E
Confidence 3678874 577788999999999764 10 011222 47889999999874 787 9
Q ss_pred EEEecCCcEEEEEcCCc----eEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCCccceEE
Q 005325 79 VSGIYPPQVKVYELRQL----SLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAY 152 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~----~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~ 152 (702)
|+|+.|++|+|||+.+. ...+..|... +..+.++|+ +..|++++.|++|++|+.....
T Consensus 71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~-------------- 134 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSAS--VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG-------------- 134 (297)
T ss_dssp EEEETTTEEEEEEBSSSCBCCCEEECCCSSC--EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS--------------
T ss_pred EEEcCCCEEEEEEcCCCceEEEEEeecCCCc--eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC--------------
Confidence 99999999999999863 2344555333 666667776 7899999999999987754210
Q ss_pred ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC-------------CCEEEEEEcCCeEEEEECCCCc
Q 005325 153 NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL-------------HGLIACGGEDGAVECFDMRMRS 219 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~-------------~~llasgs~DG~V~iWD~~t~~ 219 (702)
......+..|...|++++|+|+ +.+|++|+.|++|++||++++.
T Consensus 135 -----------------------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 135 -----------------------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp -----------------------CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred -----------------------ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 0001345678889999999997 4699999999999999998766
Q ss_pred ----ceeEEecccCCCCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCCe---EEE-EeeccCCCCeEEEEEeec
Q 005325 220 ----SAARINAVAPAGDADQEVTALEFDSNG--GFLMGVGSSTGKVLIYDLRSSY---PIR-VKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 220 ----~v~~l~~~~~~~~~~~~Vtslafspd~--g~~LasGs~DG~V~lwDlrs~~---~l~-~~~h~~~~~I~sl~fsp~ 289 (702)
.+..+..| ...|++|+|+|++ +.+||+|+.|++|+|||+++.. ... +..+.+...|.+++|+|
T Consensus 192 ~~~~~~~~l~~H------~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 264 (297)
T 2pm7_B 192 QTYVLESTLEGH------SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL- 264 (297)
T ss_dssp TEEEEEEEECCC------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-
T ss_pred ceEEEEEEecCC------CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-
Confidence 44556655 7899999999982 3799999999999999998743 112 21133367899999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCC
Q 005325 290 INTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
++..+++++.|+.|+||+..
T Consensus 265 --~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 265 --SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --SSCCEEEEETTSCEEEEEEC
T ss_pred --CCCEEEEEcCCCcEEEEEEC
Confidence 55666677789999999986
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-26 Score=256.47 Aligned_cols=264 Identities=13% Similarity=0.100 Sum_probs=209.7
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
++...|.+|+|||||++ +||++.|++|+ |..... .+.+|... +..+.++|+| .++.+.+|+..+...
T Consensus 13 ~~~~~v~sv~~SpDG~~-iASas~D~TV~--d~~~~~-~l~gh~~~--v~~V~FsPdg-------~~~~~~~~~~~~~~~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTL-YLTTFPDISIG--QPKYAK-DINCNSKN--LFHVKEFPLE-------FENKLDFELAQQNGL 79 (588)
T ss_dssp CCSSSSCCEEECTTSCE-EEECSSSEEEE--EECCCS-CCSSBGGG--TEEEEEECCC-------CCCTTTTSCCCSSCS
T ss_pred HhhccEEEEEECCCCCE-EEEEcCCceee--cccccc-eecCCCcc--EEEEEECCCC-------CcceEEEEeCCCceE
Confidence 57789999999999999 99999999999 654432 23566444 6666788887 688888887654321
Q ss_pred E-EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC-----CeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 140 S-LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP-----ALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 140 ~-~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~-----~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
. ........+++|.|.+..|++++.++.|++||... ++..+. |.. .|.+++|+|++++||+|+.||+|+||
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 1 11133445888999888899999999999999654 666677 665 59999999999999999999999999
Q ss_pred ECCCCcc-------eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE---EE-Ee-eccCCCCe
Q 005325 214 DMRMRSS-------AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP---IR-VK-DHMFDSPI 281 (702)
Q Consensus 214 D~~t~~~-------v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~---l~-~~-~h~~~~~I 281 (702)
|+.++.. +.++..+. .+|...|.+|+|+|+ | |++++.|+.|++||+..+.. .. +. .| ...|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~--~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V 229 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSD--AGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKI 229 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSC--TTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCC
T ss_pred ECCCCccccccceeeeeeeccc--ccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcE
Confidence 9998753 56665441 235789999999999 7 88999999999999988763 22 32 44 6799
Q ss_pred EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEE--EcCCCEEEEEeCCCcEEEEEcC
Q 005325 282 VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCV--FKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~--~p~~~~l~~a~~d~~I~~~~ip 353 (702)
.+++|+ +. .++++.++.|++||+.+++......+|...|++|+| +|++..|+++.++|. .+|.+.
T Consensus 230 ~svaFs-----g~-~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV-----DY-KVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE-----TT-EEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE-----CC-EEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 999998 44 555555799999999988875555479999999999 999999999999999 999875
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5e-26 Score=269.49 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=194.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEe
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ----LSLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHA 133 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~ 133 (702)
.|...|++++|+|+|++ |++|+.||.|+||++.. ....+..|... +..+.++++ +..|++++.|++|++|+
T Consensus 7 gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~--V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp -CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSC--EEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred cCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCc--eEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 47899999999999999 89999999999999974 22345556333 556666665 78899998888888765
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCe--EEEEeecCCCCeEEEEEcCC--CCEEEEEEcCCe
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR--FLSSLNTQSPALNVVSRSKL--HGLIACGGEDGA 209 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~--~~~~l~~h~~~V~~l~~sp~--~~llasgs~DG~ 209 (702)
+.+++ .+..+..|...|++++|+|+ +.+|++|+.||+
T Consensus 84 ---------------------------------------~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 84 ---------------------------------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp ---------------------------------------EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ---------------------------------------CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 33443 45667789999999999999 999999999999
Q ss_pred EEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcC-------------CCCCEEEEEeCCCeEEEEEcCCCe----EE
Q 005325 210 VECFDMRMRSS--AARINAVAPAGDADQEVTALEFDS-------------NGGFLMGVGSSTGKVLIYDLRSSY----PI 270 (702)
Q Consensus 210 V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafsp-------------d~g~~LasGs~DG~V~lwDlrs~~----~l 270 (702)
|++||++++.. ...+..+ ...|++++|+| + +.+|++|+.||.|++||++++. ++
T Consensus 125 I~vwdl~~~~~~~~~~~~~~------~~~v~~l~~~p~~~~~~~~~~~~~d-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAH------AIGVNSASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp EEEEECCSSSCCCCEEEECC------SSCEEEEEECCCC---------CGG-GCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEEEEeecCCCcceeEeecC------CCceEEEEecCcccccccccccCCC-CCEEEEEECCCeEEEEeccCCcccceee
Confidence 99999998743 3344444 68999999999 5 8999999999999999999863 33
Q ss_pred E-EeeccCCCCeEEEEEeeccCC---CCCeEEEeCCCEEEEEeCCCCc-----eeEEecCCCCceeEEEEEcCCCEEEEE
Q 005325 271 R-VKDHMFDSPIVDIKWHQSINT---ERPKLITTDNHIVRIWDPETGE-----SMTSIEPTAGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 271 ~-~~~h~~~~~I~sl~fsp~~~~---~~~ll~ss~Dg~V~IWd~~tg~-----~l~~i~~h~~~I~~v~~~p~~~~l~~a 341 (702)
. +..| ..+|++++|+| + +..+++++.|+.|+|||+.++. .+.....|...|++++|+|++.+|+++
T Consensus 198 ~~~~~h--~~~V~~l~~sp---~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 198 STLEGH--SDWVRDVAWSP---TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEECCC--SSCEEEEEECC---CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred eeecCC--CCcEEEEEecc---CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 3 4556 78999999998 3 4455666689999999999864 333345578899999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 005325 342 LDCSQIPSYFIPD 354 (702)
Q Consensus 342 ~~d~~I~~~~ip~ 354 (702)
+.|+.|.+|.+..
T Consensus 273 s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 273 GGDNKVTLWKENL 285 (753)
T ss_dssp CSSSCEECCBCCS
T ss_pred cCCCEEEEEecCC
Confidence 9999999998764
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.3e-26 Score=249.40 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=183.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCc--eEEEecCCC---ccceEEecCCCcEEEEecCCCEEEEECCCCe---EE
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGK--HYSLRIPRM---GRDMAYNSWSCDLLCAASSPELYRINLEQGR---FL 179 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~--~~~~~i~~~---~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~---~~ 179 (702)
+..+.++|++.+|++++.|+.|++|+.... .....+..+ ..++.+.+.+..+++++.++.|++||+.++. ..
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 556678899999999999999999998854 222222222 2377888887789999999999999999987 66
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 180 SSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
..+..|...|++++|+|++.+|++|+.|+.|++||+++++ .+..+... |...|++|+|+|+ +.+|++|+.|
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~l~~~~~d 167 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP-----LRSTILSLDWHPN-NVLLAAGCAD 167 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS-----CCSCEEEEEECTT-SSEEEEEESS
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc-----cCCCeEEEEEcCC-CCEEEEEeCC
Confidence 6778899999999999999999999999999999999877 36666651 2789999999999 9999999999
Q ss_pred CeEEEEEcCC------------------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce---
Q 005325 257 GKVLIYDLRS------------------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES--- 315 (702)
Q Consensus 257 G~V~lwDlrs------------------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~--- 315 (702)
|.|++||++. +.++....| ..+|++++|+| ++..+++++.|+.|+|||+.+++.
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS--GGWVHAVGFSP---SGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC--SSSEEEEEECT---TSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcccC--CceEEEEEECC---CCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999962 334443355 78999999998 455677777899999999999887
Q ss_pred -eEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 316 -MTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 316 -l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+..+..|...|++++|+|++.+|+++++++.+ +|...
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 78889999999999999999888887766555 66554
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=6.2e-25 Score=233.52 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=199.6
Q ss_pred ccCC--CcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEE
Q 005325 3 SRGG--EGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 3 s~dg--~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llat 80 (702)
++|+ +.+++.++.++.|+||++......+. ..-..|...|++++|+|++++ |++
T Consensus 48 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-----------------------~~~~~h~~~v~~~~~~~~~~~-l~s 103 (368)
T 3mmy_A 48 SPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-----------------------KAQQMHTGPVLDVCWSDDGSK-VFT 103 (368)
T ss_dssp CCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-----------------------EEEEECSSCEEEEEECTTSSE-EEE
T ss_pred cCCCCCceEEEEECCCCcEEEEEcCCCCceeE-----------------------EEeccccCCEEEEEECcCCCE-EEE
Confidence 4563 33467778888999999987301110 011237789999999999999 889
Q ss_pred EecCCcEEEEEcCCceE-EEeeecCCceEEEEEE-cCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCc
Q 005325 81 GIYPPQVKVYELRQLSL-KFERHLDSEIINFEVL-ADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCD 158 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~l-s~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~ 158 (702)
|+.|+.|++||+.+... .+..| ...+..+.+. ++++..|++++.|+.|++|+.........+......+........
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC-SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred EcCCCcEEEEEcCCCCceeeccc-cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence 99999999999998554 33444 4445555442 888899999999999999998732222222222334444445567
Q ss_pred EEEEecCCCEEEEECCCCeEEEEe--ecCCCCeEEEEEcCCCCE----EEEEEcCCeEEEEECCCC---cceeEEecccC
Q 005325 159 LLCAASSPELYRINLEQGRFLSSL--NTQSPALNVVSRSKLHGL----IACGGEDGAVECFDMRMR---SSAARINAVAP 229 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l--~~h~~~V~~l~~sp~~~l----lasgs~DG~V~iWD~~t~---~~v~~l~~~~~ 229 (702)
+++++.++.+.+|++......... ..+...+.++++.+.... +++|+.||.|++||++.. ..+..+..+..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 899999999999999876543322 223446677777665543 999999999999999987 56777777621
Q ss_pred C------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 230 A------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 230 ~------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
. ..|...|++++|+|+ +.+|++|+.||.|+|||+.+++++. +..| ..+|++++|+| ++..+++++.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~---~g~~l~~~s~d 336 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQL--DQPISACCFNH---NGNIFAYASSY 336 (368)
T ss_dssp C----CCCEEECCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCC--SSCEEEEEECT---TSSCEEEEECC
T ss_pred ccccccccccccceEEEEEecC-CCEEEEEccCCeEEEEECCCCcEEEEecCC--CCCceEEEECC---CCCeEEEEecc
Confidence 0 111227999999999 9999999999999999999998877 4555 68999999998 55666667666
Q ss_pred CEEEEEeC
Q 005325 303 HIVRIWDP 310 (702)
Q Consensus 303 g~V~IWd~ 310 (702)
+..+.|++
T Consensus 337 ~~~~~~~~ 344 (368)
T 3mmy_A 337 DWSKGHEF 344 (368)
T ss_dssp CSTTCGGG
T ss_pred cccccccc
Confidence 64444443
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=7.5e-25 Score=231.60 Aligned_cols=271 Identities=14% Similarity=0.080 Sum_probs=204.4
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCC-EEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGE-FLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~-~llatG 81 (702)
++||.. ++.++.++.|+||++..+ .. ...+...+.+...|++++|+|+++ + |++|
T Consensus 20 s~~~~~-l~~~~~d~~v~iw~~~~~-~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~ 75 (342)
T 1yfq_A 20 IPSKSL-LLITSWDGSLTVYKFDIQ-AK---------------------NVDLLQSLRYKHPLLCCNFIDNTDLQ-IYVG 75 (342)
T ss_dssp EGGGTE-EEEEETTSEEEEEEEETT-TT---------------------EEEEEEEEECSSCEEEEEEEESSSEE-EEEE
T ss_pred cCCCCE-EEEEcCCCeEEEEEeCCC-Cc---------------------cccceeeeecCCceEEEEECCCCCcE-EEEE
Confidence 567663 567778899999999887 21 011222336788999999999999 7 8999
Q ss_pred ecCCcEEEEEc-CCceE-EEee--ecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC---------ceE--EEecCCC
Q 005325 82 IYPPQVKVYEL-RQLSL-KFER--HLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG---------KHY--SLRIPRM 146 (702)
Q Consensus 82 s~dg~I~vwdl-~~~~~-~~~~--h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g---------~~~--~~~i~~~ 146 (702)
+.++.|++|++ ..... .+.. | ... +..+.+++ +..|++++.|+.|.+|+... ... .+..+..
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~-~~~-v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEA-NLG-ICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCC-CSC-EEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred cCCCeEEEEEeccCCceEeccccCC-CCc-eEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence 99999999999 77443 4444 5 343 44555666 89999999999999998753 111 1112223
Q ss_pred ccceEEecCCCcEEEEecCCCEEEEECCC-Ce--EEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCC----
Q 005325 147 GRDMAYNSWSCDLLCAASSPELYRINLEQ-GR--FLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMR---- 218 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~--~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~---- 218 (702)
..++.+.+.. +++++.++.|++||+.+ +. .......|...|++++|+| ++.+|++|+.||.|++||+...
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 3366666544 89999999999999998 54 3334456788999999999 9999999999999999999987
Q ss_pred --cceeEEecccCC---CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCC
Q 005325 219 --SSAARINAVAPA---GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 219 --~~v~~l~~~~~~---~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~ 292 (702)
..+..+..+... ..|...|++++|+|+ +.+|++|+.||.|++||+.+++++.. ..| +..+|++++ | +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~--~---~ 303 (342)
T 1yfq_A 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA--C---S 303 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE--E---C
T ss_pred ccccceeeecccccccccccceeEEEEEEcCC-CCEEEEecCCceEEEEcCccHhHhhhhhcc-cCCCceEec--C---C
Confidence 788888877210 123459999999999 99999999999999999999998774 333 267899999 6 4
Q ss_pred CCCeEEEeCCCE-EEEEe
Q 005325 293 ERPKLITTDNHI-VRIWD 309 (702)
Q Consensus 293 ~~~ll~ss~Dg~-V~IWd 309 (702)
+..+++++.|+. .+.|.
T Consensus 304 ~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 304 DNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECTHHHHCSS
T ss_pred CCeEEEEecCCccccccc
Confidence 556666778998 55555
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=3.3e-25 Score=241.88 Aligned_cols=302 Identities=12% Similarity=0.080 Sum_probs=187.8
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCC-CccccchHhhhhhccCcc---c-ccceeeeecccCCCceeEEEECCCCCEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRS-VAAWLTPKKQRALRKNID---Y-QRRVELIQDLWFETATTKIRETPDGEFL 77 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~s-lp~w~~~k~kr~lk~~~~---~-~~rieliqd~~~~~~v~~i~~SpDG~~l 77 (702)
++++.. ++.+..+++|.||.++..... ...+... ..+....... . -..........+...+....+++++.+
T Consensus 27 ~~~~~~-l~a~g~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (393)
T 4gq1_A 27 SPSCSN-LLAIGHDTGITIYCASEEQTPGSTGLTLQ-ELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLF- 103 (393)
T ss_dssp SGGGTT-EEEEEESSEEEEEEEEECCSSSCCSEEEE-EEEEEECSSCEEEEEECTTCEEECC----------CCEEEEE-
T ss_pred CCCCCC-EEEEECCCCEEEEECCCCCccccccccee-eeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCE-
Confidence 445554 577778999999998754111 1111000 0000000000 0 000011122234444555566667766
Q ss_pred EEEEecCCcEEEEEcCCceEE-------EeeecCCceEEEEEEcC--------CCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 78 IVSGIYPPQVKVYELRQLSLK-------FERHLDSEIINFEVLAD--------DYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~~-------~~~h~~~~vv~~~~ls~--------dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
||+|+.|++|+|||+...... +.+|.+. +..+.++| |+..||+++.|++|+|
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~--v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~----------- 170 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF--VNDIDIADVYSADNRLAEQVIASVGDDCTLII----------- 170 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC--EEEEEEEEEECTTCSEEEEEEEEEETTSEEEE-----------
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCc--eEEEEEccccccccCCCCCEEEEEECCCeEEE-----------
Confidence 999999999999999874331 3456444 55555554 6778888888888887
Q ss_pred cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcce
Q 005325 143 IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSA 221 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v 221 (702)
||+.++..+..+..|...|.+++|+|++ .+|++|+.||+|++||+++++..
T Consensus 171 ----------------------------Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 171 ----------------------------WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp ----------------------------EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ----------------------------EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 5555566666677888899999999988 58999999999999999987654
Q ss_pred eEEeccc-------------------CCCCCCCCeEEEEEc-CCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eeecc----
Q 005325 222 ARINAVA-------------------PAGDADQEVTALEFD-SNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHM---- 276 (702)
Q Consensus 222 ~~l~~~~-------------------~~~~~~~~Vtslafs-pd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~---- 276 (702)
..+..+. ....|...|.++.|+ |+ +..|++++.|+.|+|||+..+.... +..|.
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d-g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~ 301 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD-GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLG 301 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT-TCEEEEECTTSEEEEEEC-----------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCC-CCEEEEEeCCCCEEEEECccCCCCceEeeecCccc
Confidence 4332210 013467889999997 67 9999999999999999998765433 22221
Q ss_pred ------------CCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeC
Q 005325 277 ------------FDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 277 ------------~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
....+..+.|+| ..++.+++++ .|+.|+|||+.++..+..+..|..+|++|+|+|++.+|+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 302 PKNLLPNVQGISLFPSLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp --CCSCSEEEECSSCCSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cEEEccccccccccCcceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 011222334554 2345555555 6999999999999998888888999999999999999999998
Q ss_pred CCcEEEEEc
Q 005325 344 CSQIPSYFI 352 (702)
Q Consensus 344 d~~I~~~~i 352 (702)
++ +.+|.+
T Consensus 380 ~G-v~lvrL 387 (393)
T 4gq1_A 380 GS-VLLTRL 387 (393)
T ss_dssp SE-EEEEEE
T ss_pred CC-eEEEEE
Confidence 76 444443
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=9.4e-24 Score=228.23 Aligned_cols=264 Identities=10% Similarity=0.047 Sum_probs=211.6
Q ss_pred CEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEE--EecCCCccceE
Q 005325 75 EFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHYS--LRIPRMGRDMA 151 (702)
Q Consensus 75 ~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~--~~i~~~~~~l~ 151 (702)
++++++++.++.|++||+.+............ +..+.+++++..| ++++.|+.|.+|+....... +..+....+++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence 46789999999999999988544322222222 5677789999987 56668999999998743222 33344444888
Q ss_pred EecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEECCCCcceeEEecccC
Q 005325 152 YNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI-ACGGEDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 152 ~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll-asgs~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
+.+.+..+++++. ++.|++||+.+++.+..+..|. .+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-- 157 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--
Confidence 8888777776664 5899999999999988887665 68999999999866 78888999999999999988888776
Q ss_pred CCCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe---CCCEE
Q 005325 230 AGDADQEVTALEFDSNGGFLM-GVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT---DNHIV 305 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~L-asGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss---~Dg~V 305 (702)
..+.+++|+|+ +.+| ++++.++.|++||+++++++....+ ...+.+++|+| ++..+++++ .++.|
T Consensus 158 -----~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~---~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 158 -----RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNP---EGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp -----SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECT---TSSEEEEEEECSSCCEE
T ss_pred -----CCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECC---CCCEEEEEecCcCCCcE
Confidence 67899999999 8776 6778899999999999988876666 46889999998 455566665 58999
Q ss_pred EEEeCCCCceeEEecCCCCceeEEEEEcCCCEE-EEEeCCCcEEEEEcCC
Q 005325 306 RIWDPETGESMTSIEPTAGKINDVCVFKDSGLL-LLALDCSQIPSYFIPD 354 (702)
Q Consensus 306 ~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l-~~a~~d~~I~~~~ip~ 354 (702)
++||+.+++.+..+..| ..+.+++|+|++..| ++++.++.|.+|.+..
T Consensus 227 ~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 99999999999998884 467899999999877 5557899999998764
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.9e-24 Score=226.93 Aligned_cols=253 Identities=16% Similarity=0.167 Sum_probs=183.9
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECC--CCCEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETP--DGEFLIV 79 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~Sp--DG~~lla 79 (702)
++||.. +++++.++.|+||++..+ ... ..++..+ .|...|++++|+| |+.+ |+
T Consensus 20 ~~~~~~-l~~~~~dg~i~iw~~~~~-~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~d~~~-l~ 75 (351)
T 3f3f_A 20 DFYGRH-VATCSSDQHIKVFKLDKD-TSN---------------------WELSDSWRAHDSSIVAIDWASPEYGRI-IA 75 (351)
T ss_dssp CSSSSE-EEEEETTSEEEEEEECSS-SCC---------------------EEEEEEEECCSSCEEEEEECCGGGCSE-EE
T ss_pred cCCCCE-EEEeeCCCeEEEEECCCC-CCc---------------------ceecceeccCCCcEEEEEEcCCCCCCE-EE
Confidence 577774 577778888999999876 211 1222333 4788999999999 6888 89
Q ss_pred EEecCCcEEEEEcCCc-----------eEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCC
Q 005325 80 SGIYPPQVKVYELRQL-----------SLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRM 146 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~-----------~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~ 146 (702)
+|+.|+.|++||+... ...+..|... +..+.++++ +.+|++++.|+.|++|+........
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----- 148 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS--LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR----- 148 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC--EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT-----
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCCc--eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc-----
Confidence 9999999999999873 2344445333 666667888 8999999999999999875211000
Q ss_pred ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEECCCCcc--e
Q 005325 147 GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL---HGLIACGGEDGAVECFDMRMRSS--A 221 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~---~~llasgs~DG~V~iWD~~t~~~--v 221 (702)
.+... . . .... ......|...+.+++|+|+ +.+|++++.++.+.+|+...+.. +
T Consensus 149 --~~~~~---------~---~---~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 149 --SWTLT---------S---E---MKVL----SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp --CCEEE---------E---E---EESC----SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred --ccccc---------c---c---cccc----ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 00000 0 0 0000 0011257778999999997 89999999999998888887765 4
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCC----CEEEEEeCCCeEEEEEcCCC------------------------------
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGG----FLMGVGSSTGKVLIYDLRSS------------------------------ 267 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g----~~LasGs~DG~V~lwDlrs~------------------------------ 267 (702)
..+..| ...|++++|+|+ + .+|++|+.||.|++||++.+
T Consensus 208 ~~~~~h------~~~i~~~~~~p~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 208 AKLPGH------KSLIRSISWAPS-IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp EECCCC------CSCEEEEEECCC-SSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred eecCCC------CcceeEEEECCC-CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 445444 789999999999 7 79999999999999999874
Q ss_pred ----------------eEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEe
Q 005325 268 ----------------YPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 268 ----------------~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i 319 (702)
.++. +..| ..+|++++|+| ++..+++++.|+.|+||++.+++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL---TGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----------CCSEEEEEEEEECTT--SSCEEEEEECS---SSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccceeeeecccccccEEEEEecc--cccEEEEEEcC---CCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 2333 3445 67999999998 4566777778999999999987655443
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=2.1e-25 Score=235.90 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=173.3
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC--CCEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD--GEFLIV 79 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD--G~~lla 79 (702)
++||.. +++++.++.|+||++..+ .. .++..+ .|...|++++|+|+ +.+ |+
T Consensus 22 s~~g~~-lasgs~D~~v~lwd~~~~-~~-----------------------~~~~~l~gH~~~V~~v~~~~~~~~~~-l~ 75 (316)
T 3bg1_A 22 DYYGTR-LATCSSDRSVKIFDVRNG-GQ-----------------------ILIADLRGHEGPVWQVAWAHPMYGNI-LA 75 (316)
T ss_dssp CGGGCE-EEEEETTTEEEEEEEETT-EE-----------------------EEEEEEECCSSCEEEEEECCGGGSSC-EE
T ss_pred cCCCCE-EEEEeCCCeEEEEEecCC-Cc-----------------------EEEEEEcCCCccEEEEEeCCCCCCCE-EE
Confidence 577774 577788999999999876 11 112223 48899999999874 787 89
Q ss_pred EEecCCcEEEEEcCCc----eEEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCCccceEEe
Q 005325 80 SGIYPPQVKVYELRQL----SLKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYN 153 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~----~~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~ 153 (702)
+|+.|++|+|||+.+. ...+..|... +..+.++|+ +..|++++.|++|++|+......
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------------- 139 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSS--VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------------- 139 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSC--CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--------------
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCc--eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--------------
Confidence 9999999999999863 2244456333 555556766 77889999999998887652100
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC-----------------CCEEEEEEcCCeEEEEECC
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL-----------------HGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~-----------------~~llasgs~DG~V~iWD~~ 216 (702)
| .....+..|...|++++|+|+ +.+|++|+.|++|++||++
T Consensus 140 -----------------~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 140 -----------------W-----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp -----------------E-----EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred -----------------c-----ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence 0 012234567777888888876 4689999999999999997
Q ss_pred CC---cceeEEecccCCCCCCCCeEEEEEcCCCC----CEEEEEeCCCeEEEEEcCCC---e--EEEEeeccCCCCeEEE
Q 005325 217 MR---SSAARINAVAPAGDADQEVTALEFDSNGG----FLMGVGSSTGKVLIYDLRSS---Y--PIRVKDHMFDSPIVDI 284 (702)
Q Consensus 217 t~---~~v~~l~~~~~~~~~~~~Vtslafspd~g----~~LasGs~DG~V~lwDlrs~---~--~l~~~~h~~~~~I~sl 284 (702)
.. .++..+..| ...|++++|+|+ + .+|++|+.||+|+|||+... . ...+..| ..+|+++
T Consensus 198 ~~~~~~~~~~l~~h------~~~V~~v~~sp~-~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v 268 (316)
T 3bg1_A 198 EDGQWKEEQKLEAH------SDWVRDVAWAPS-IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHV 268 (316)
T ss_dssp TTSCEEEEECCBCC------SSCEEEEECCCC-SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEE
T ss_pred CCCccceeeecccC------CCceEEEEecCC-CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEE
Confidence 54 344555555 789999999998 5 78999999999999999862 1 1224455 6799999
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
+|+| ++..+++++.|++|+||+..
T Consensus 269 ~~sp---~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSI---TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECT---TTCCEEEEESSSCEEEEEEC
T ss_pred EEcC---CCCEEEEEcCCCeEEEEEEC
Confidence 9998 55666677789999999975
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1e-23 Score=222.32 Aligned_cols=271 Identities=9% Similarity=0.092 Sum_probs=184.7
Q ss_pred cceeeeecccCCCceeE-----EEE-CCCCCEEEEEEecCCcEEEEEcCCc---eEEEeeecCC-ceEEE----------
Q 005325 51 RRVELIQDLWFETATTK-----IRE-TPDGEFLIVSGIYPPQVKVYELRQL---SLKFERHLDS-EIINF---------- 110 (702)
Q Consensus 51 ~rieliqd~~~~~~v~~-----i~~-SpDG~~llatGs~dg~I~vwdl~~~---~~~~~~h~~~-~vv~~---------- 110 (702)
..++++..|.-|...-. +.| .+..+-..+.......|++|+.... ...+.-|... +|..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 45677777776654333 333 2444443444445689999999884 3333333222 23333
Q ss_pred --------------EEEcCC----CCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEec---CCCEE
Q 005325 111 --------------EVLADD----YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAAS---SPELY 169 (702)
Q Consensus 111 --------------~~ls~d----g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~---d~~V~ 169 (702)
++++|| +..+++++.+ +.+|++ ....++.++. ++.|.
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------~~g~lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------TKRRLVSSSGTLSDQQVE 160 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE--------------------TTTEEEEEESSSTTCEEE
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEec--------------------CCCcEEEecccCCCCcEE
Confidence 333444 4444443322 333322 2344555543 88999
Q ss_pred EEEC-CCCeEEEEeecCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 170 RINL-EQGRFLSSLNTQSPALNVVSRSK---LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 170 vwdl-~~g~~~~~l~~h~~~V~~l~~sp---~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
+|++ .+|+.+..+..|...++.++|+| ++.+|++|+.|++|+|||+.+++++.++..+. .+...|.+++|+|+
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~---~~v~~v~~vafSpd 237 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD---SYQASVCHKAYSEM 237 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEET
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---cceeeeEEEEECCC
Confidence 9999 56999999999999999999999 67999999999999999999999999998651 12357888999999
Q ss_pred CCCEE------------EEEeCCCeEEEEEcCCCeEEEEe----eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEe
Q 005325 246 GGFLM------------GVGSSTGKVLIYDLRSSYPIRVK----DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWD 309 (702)
Q Consensus 246 ~g~~L------------asGs~DG~V~lwDlrs~~~l~~~----~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd 309 (702)
|.++ ++|+.|++|++||..+++.+.+. ...+...+.+..++ +..+++++.|++|+|||
T Consensus 238 -G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-----g~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 238 -GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-----DHCAAAILTSGTIAIWD 311 (356)
T ss_dssp -TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-----TTEEEEEETTSCEEEEE
T ss_pred -CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-----CCEEEEEcCCCcEEEEE
Confidence 8876 56888999999999999877643 11123334444443 33444555799999999
Q ss_pred CCCCceeEEecCCCCcee-EEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 310 PETGESMTSIEPTAGKIN-DVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 310 ~~tg~~l~~i~~h~~~I~-~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
+.+|+++.++.+|...+. .++|+|++.+|++|+.|++|++|.+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999887655 5899999999999999999999974
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.8e-25 Score=233.37 Aligned_cols=256 Identities=11% Similarity=0.092 Sum_probs=175.3
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVK 88 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~ 88 (702)
++++.+.++.|+||++..+ +.+..+ . ...+.++.|+|+ +++|+.|+.|+
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~-~~~~~~----------------------~----~~~v~~~~~~~~----~~s~s~D~~i~ 98 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDS-KTITTI----------------------T----TPNPRTGGEHPA----IISRGPCNRLL 98 (343)
T ss_dssp EEEEEEETTEEEEEEESSS-SCEEEE----------------------E----EECCCTTCCCCS----EEEECSTTEEE
T ss_pred EEEEECCCCcEEEEECCCC-cEEEEE----------------------e----cCCceeeeeCCc----eEEecCCCeEE
Confidence 4678899999999999988 332111 1 245667788887 78999999999
Q ss_pred EEEcCCceEEEee--------e--cCCceEEEEEEcC--CCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCC
Q 005325 89 VYELRQLSLKFER--------H--LDSEIINFEVLAD--DYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWS 156 (702)
Q Consensus 89 vwdl~~~~~~~~~--------h--~~~~vv~~~~ls~--dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s 156 (702)
+|+.......+.. + .....+..+.++| ++.+|++++.|+
T Consensus 99 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg----------------------------- 149 (343)
T 3lrv_A 99 LLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG----------------------------- 149 (343)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC-----------------------------
T ss_pred EEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC-----------------------------
Confidence 9987752211110 0 0011233334444 445555555554
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce-eEEec-ccCCCCC
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA-ARINA-VAPAGDA 233 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v-~~l~~-~~~~~~~ 233 (702)
.|++||+.+++.+..+.. |...|++++|+|++.+|++|+.||.|++||+++++.+ ..+.. |
T Consensus 150 ----------~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h------ 213 (343)
T 3lrv_A 150 ----------TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE------ 213 (343)
T ss_dssp ----------CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCT------
T ss_pred ----------cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccC------
Confidence 455577777776555533 4557999999999999999999999999999999887 77776 5
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eee---ccCCCCeE--EEEEeeccCCCCCeEEEeC-CCEEE
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKD---HMFDSPIV--DIKWHQSINTERPKLITTD-NHIVR 306 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~---h~~~~~I~--sl~fsp~~~~~~~ll~ss~-Dg~V~ 306 (702)
..+|++|+|+|+ +.+|++|+ ++.|+|||+++..++. +.. | ..++. +++|+| ++..+++++. |+.|+
T Consensus 214 ~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 214 EAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP--EFKTGTVTYDIDD---SGKNMIAYSNESNSLT 286 (343)
T ss_dssp TSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEECT---TSSEEEEEETTTTEEE
T ss_pred CCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcceeecccccc--cccccceEEEECC---CCCEEEEecCCCCcEE
Confidence 689999999999 99999999 5599999999877643 221 2 23343 699998 4444555555 99999
Q ss_pred EEeCCCCceeEEecCCCCceeEEEEEc---CCCEEEEEeCCCcEEEEE
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCVFK---DSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~~p---~~~~l~~a~~d~~I~~~~ 351 (702)
||++.+....... .++..++|.| +...+++++.++.+.++.
T Consensus 287 v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 287 IYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred EEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 9999765443332 4566667776 666777777777776653
No 118
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-23 Score=225.39 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=181.0
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC--CCEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD--GEFLIV 79 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD--G~~lla 79 (702)
++||.. ++.++.++.|+||++..+ . ..++..+ .|...|++++|+|+ +.+ |+
T Consensus 20 s~~~~~-l~~~~~dg~i~iw~~~~~-~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~ 73 (379)
T 3jrp_A 20 DYYGKR-LATCSSDKTIKIFEVEGE-T-----------------------HKLIDTLTGHEGPVWRVDWAHPKFGTI-LA 73 (379)
T ss_dssp CSSSSE-EEEEETTSCEEEEEEETT-E-----------------------EEEEEEECCCSSCEEEEEECCGGGCSE-EE
T ss_pred cCCCCE-EEEEECCCcEEEEecCCC-c-----------------------ceeeeEecCCCCcEEEEEeCCCCCCCE-EE
Confidence 578774 566677889999999854 1 0122222 47789999999988 888 89
Q ss_pred EEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCCccceEEe
Q 005325 80 SGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYN 153 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~ 153 (702)
+|+.|+.|++||+.+.. ..+..|.. .+..+.++++ +..|++++.|+.|.+|+.....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------------- 136 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG--------------- 136 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS---------------
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCc--ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC---------------
Confidence 99999999999998853 23333422 3666667777 8899999999988887654210
Q ss_pred cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-------------CCCEEEEEEcCCeEEEEECCCCcc
Q 005325 154 SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-------------LHGLIACGGEDGAVECFDMRMRSS 220 (702)
Q Consensus 154 ~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-------------~~~llasgs~DG~V~iWD~~t~~~ 220 (702)
......+..|...|++++|+| ++.+|++|+.||.|++||++++..
T Consensus 137 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 137 ----------------------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp ----------------------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred ----------------------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 012234567888999999999 689999999999999999987653
Q ss_pred e----eEEecccCCCCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCCe----EEEEeeccCCCCeEEEEEeecc
Q 005325 221 A----ARINAVAPAGDADQEVTALEFDSNG--GFLMGVGSSTGKVLIYDLRSSY----PIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 221 v----~~l~~~~~~~~~~~~Vtslafspd~--g~~LasGs~DG~V~lwDlrs~~----~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
. ..+..| ...|++++|+|++ +.+|++++.||.|+|||++++. ........+..+|++++|+|
T Consensus 195 ~~~~~~~~~~h------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-- 266 (379)
T 3jrp_A 195 TYVLESTLEGH------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-- 266 (379)
T ss_dssp EEEEEEEECCC------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--
T ss_pred ceeeEEEEecc------cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC--
Confidence 3 444444 7899999999985 6899999999999999999864 22222222367999999998
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCcee
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESM 316 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l 316 (702)
++..+++++.|+.|+||++.++..+
T Consensus 267 -~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 267 -SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp -SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred -CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 5666777788999999999865433
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=9.1e-24 Score=227.26 Aligned_cols=265 Identities=9% Similarity=0.076 Sum_probs=189.8
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
|+||. +|.+..+++++||++..+ . .+....+. .+..+++++++.+++++|+
T Consensus 28 s~dg~--~la~g~~~~~~iw~~~~~-~-------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 28 NQDQS--CLILSTLKSFEIYNVHPV-A-------------------------HIMSQEMR-HLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp CTTSS--EEEEECSSEEEEEEETTE-E-------------------------EEEEEECS-CCCEEEECTTSSEEEEECS
T ss_pred CCCCC--EEEEEcCCEEEEEecCCc-c-------------------------eeeeeecC-CeEEEEEcCCCCEEEEEEC
Confidence 68888 577777888999998765 1 11111222 4788999999999778889
Q ss_pred cCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eEEEecCCCccceEEecCCCcEEE
Q 005325 83 YPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HYSLRIPRMGRDMAYNSWSCDLLC 161 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~~~~~~l~~~~~s~~llv 161 (702)
.++.|+|||+.+............ +..+.++++ .++++ .|+.|++|+.... .....+.. ...+..... ..+++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~-v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~-~~la~ 152 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAP-VKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN-GLLVY 152 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSC-EEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET-TEEEE
T ss_pred CccEEEEEECCCCcEEEEEECCCc-eEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc-cEEEE
Confidence 999999999988544333332343 445556654 34443 4889999998743 11111111 122222222 44444
Q ss_pred --EecCCCEEEEECCCCe----------------EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCe-EEEEECCCCccee
Q 005325 162 --AASSPELYRINLEQGR----------------FLSSLNTQSPALNVVSRSKLHGLIACGGEDGA-VECFDMRMRSSAA 222 (702)
Q Consensus 162 --~s~d~~V~vwdl~~g~----------------~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~-V~iWD~~t~~~v~ 222 (702)
++.++.|++||+.++. .+..+.+|...|++++|+|++.+|++|+.||+ |++||+++++++.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 4678899999999876 26778999999999999999999999999998 9999999999999
Q ss_pred EEe-c-ccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--E--------------------eeccCC
Q 005325 223 RIN-A-VAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--V--------------------KDHMFD 278 (702)
Q Consensus 223 ~l~-~-~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~--------------------~~h~~~ 278 (702)
.+. . | ...|++++|+|+ +.+|++|+.|++|+|||++...... . ......
T Consensus 233 ~~~~g~h------~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 233 EFRRGLD------RADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp EEECTTC------CSCEEEEEECTT-SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred EEEcCCC------CCcEEEEEECCC-CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 998 3 5 689999999999 9999999999999999998643110 0 011112
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
.++..++|+| ++..+++++.|+.+++|++..
T Consensus 306 ~~~~~~a~~~---d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 306 VRGCKIAWIS---ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCEEEESS---SSEEEEEETTTTEEEEEEEEE
T ss_pred CCceEEEEeC---CCCEEEEEeCCCeEEEEEEEc
Confidence 3457799997 455677777899999999764
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=233.37 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=164.8
Q ss_pred ccceEEecCCCcE-EEEecCCCEEEEECC--CCeEEEEee--cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce
Q 005325 147 GRDMAYNSWSCDL-LCAASSPELYRINLE--QGRFLSSLN--TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA 221 (702)
Q Consensus 147 ~~~l~~~~~s~~l-lv~s~d~~V~vwdl~--~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v 221 (702)
..++.+.+.+..| ++++.++.|.+||+. ++..+..+. .|...|++++|+|++.+|++|+.+|.|.+|++.++...
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence 3477888877775 677789999999999 888888876 56788999999999999999999999999999887654
Q ss_pred e----EEecccCCCCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCCeEEEE--eeccCCCCeEEEEEeeccCCC
Q 005325 222 A----RINAVAPAGDADQEVTALEFDSN--GGFLMGVGSSTGKVLIYDLRSSYPIRV--KDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 222 ~----~l~~~~~~~~~~~~Vtslafspd--~g~~LasGs~DG~V~lwDlrs~~~l~~--~~h~~~~~I~sl~fsp~~~~~ 293 (702)
. .+..| ...|++|+|+|+ ++.+|++|+.|+.|+|||++++.++.. .+| ..+|++++|+ ++
T Consensus 185 ~~~~~~~~~h------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~s----d~ 252 (450)
T 2vdu_B 185 KFTQEPILGH------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH--KHFVSSICCG----KD 252 (450)
T ss_dssp SCCCCCSEEC------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC--SSCEEEEEEC----ST
T ss_pred cccceeeecc------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC--CCceEEEEEC----CC
Confidence 3 55555 689999999997 367999999999999999999887764 355 7899999997 35
Q ss_pred CCeEEEeCCCEEEEEeCCCCceeEEecC-------------------------CCCceeEEEEEcCCCEEEEEe-CCCcE
Q 005325 294 RPKLITTDNHIVRIWDPETGESMTSIEP-------------------------TAGKINDVCVFKDSGLLLLAL-DCSQI 347 (702)
Q Consensus 294 ~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-------------------------h~~~I~~v~~~p~~~~l~~a~-~d~~I 347 (702)
..+++++.|+.|+|||+.+++++..+.. +...|.+++|+|++.+|++++ .++.|
T Consensus 253 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 6677777899999999999998888763 235789999999999999999 89999
Q ss_pred EEEEc
Q 005325 348 PSYFI 352 (702)
Q Consensus 348 ~~~~i 352 (702)
.+|.+
T Consensus 333 ~iw~~ 337 (450)
T 2vdu_B 333 IILEM 337 (450)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99998
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-24 Score=241.79 Aligned_cols=254 Identities=12% Similarity=0.084 Sum_probs=193.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
.|+..|.+|+|+||| .++.+.+|+.......-..| ...+..+.+||||..||+++.|+.|.+|+..+...
T Consensus 50 gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~ 119 (588)
T 2j04_A 50 CNSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQP--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLT 119 (588)
T ss_dssp SBGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSC--SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEE
T ss_pred CCCccEEEEEECCCC--------CcceEEEEeCCCceEeecCC--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceee
Confidence 478899999999999 45666666654322211133 34588888999999999999999999999766433
Q ss_pred EEecCCC------ccceEEecCCCcEEEEecCCCEEEEECCCCe-------EEEEe----ecCCCCeEEEEEcCCCCEEE
Q 005325 140 SLRIPRM------GRDMAYNSWSCDLLCAASSPELYRINLEQGR-------FLSSL----NTQSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 140 ~~~i~~~------~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-------~~~~l----~~h~~~V~~l~~sp~~~lla 202 (702)
.+. +.. ..+++|+|.+..|++++.|++|.+||+.++. .+.++ .+|...|.+++|+|++ ++
T Consensus 120 ~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La 196 (588)
T 2j04_A 120 NLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV 196 (588)
T ss_dssp ECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE
T ss_pred ecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EE
Confidence 333 332 3488999988889999999999999999885 36676 5677899999999999 78
Q ss_pred EEEcCCeEEEEECCCCcc---eeEEe-cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccC
Q 005325 203 CGGEDGAVECFDMRMRSS---AARIN-AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMF 277 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~---v~~l~-~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~ 277 (702)
+++.|++|++||+..+.. ..++. .| ...|.+|+|+ |..||+++ ++.|++||+.++.... ..+|
T Consensus 197 ass~D~tVrlWd~~~~~~~~~~~tL~~~h------~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-- 264 (588)
T 2j04_A 197 AALSNNSVFSMTVSASSHQPVSRMIQNAS------RRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-- 264 (588)
T ss_dssp EEETTCCEEEECCCSSSSCCCEEEEECCC------SSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSC--
T ss_pred EEeCCCeEEEEECCCCccccceeeecccc------cCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--
Confidence 889999999999988773 34563 44 6899999999 47888887 6999999999988854 4466
Q ss_pred CCCeEEEEE--eeccCCCCCeEEEe-CCCEEEEEeCCC-----------------------CceeEEecCCCCceeEEEE
Q 005325 278 DSPIVDIKW--HQSINTERPKLITT-DNHIVRIWDPET-----------------------GESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 278 ~~~I~sl~f--sp~~~~~~~ll~ss-~Dg~V~IWd~~t-----------------------g~~l~~i~~h~~~I~~v~~ 331 (702)
...|..++| +| ++..++++ .+|+ +||.... +..+..++. ...|++++|
T Consensus 265 ~~~V~~va~~~s~----d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~ 338 (588)
T 2j04_A 265 LENFHIIPLNHEK----ESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISL 338 (588)
T ss_dssp CSCCCEEEETTCS----SCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEE
T ss_pred CceEEEEEeeeCC----CCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEE
Confidence 789999999 87 55555555 5898 9998742 111112222 346899999
Q ss_pred EcCCCEEEEEeCC
Q 005325 332 FKDSGLLLLALDC 344 (702)
Q Consensus 332 ~p~~~~l~~a~~d 344 (702)
+|++.++++++.=
T Consensus 339 SPdG~~lA~~~~i 351 (588)
T 2j04_A 339 SPDGYSIAIVYDM 351 (588)
T ss_dssp CTTSSEEEEEEEE
T ss_pred CCCCCEEEEEEec
Confidence 9999999988753
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=9.4e-23 Score=224.97 Aligned_cols=242 Identities=11% Similarity=0.174 Sum_probs=177.3
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCceeEEEECCCCCEEEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~v~~i~~SpDG~~llatG 81 (702)
++++..++++++.++.|+||++... ...|.-. .....+.. ..|...+++|+|+|++..+|++|
T Consensus 137 ~p~~~~~lat~~~dg~V~vwd~~~~-~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 137 MPQNACVIATKTPSSDVLVFDYTKH-PSKPEPS---------------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp ETTEEEEEEEECSSSCEEEEEGGGS-CSSCCTT---------------CCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred CCCCCcEEEEECCCCcEEEEECCCc-ccccCcc---------------ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 4554555666677888999999875 2222100 00011111 24778899999999999449999
Q ss_pred ecCCcEEEEEcCCc---------eEEEeeecCCceEEEEEEcC-CCCEEEEEECCCeEEEEecCCceEEEecCCCccceE
Q 005325 82 IYPPQVKVYELRQL---------SLKFERHLDSEIINFEVLAD-DYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMA 151 (702)
Q Consensus 82 s~dg~I~vwdl~~~---------~~~~~~h~~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~ 151 (702)
+.|+.|++|++... ...+..|. .. +..+.+++ ++..|++++.|+.|++|++.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-~~-v~~v~~~p~~~~~l~s~~~dg~i~i~d~~---------------- 262 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHT-AV-VEDVAWHLLHESLFGSVADDQKLMIWDTR---------------- 262 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCS-SC-EEEEEECSSCTTEEEEEETTSEEEEEETT----------------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCC-CC-EeeeEEeCCCCCEEEEEeCCCeEEEEECC----------------
Confidence 99999999999871 12344453 33 44444555 66777788778777776544
Q ss_pred EecCCCcEEEEecCCCEEEEECCCC---eEEEEeecCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEECCC-CcceeEEec
Q 005325 152 YNSWSCDLLCAASSPELYRINLEQG---RFLSSLNTQSPALNVVSRSKLHG-LIACGGEDGAVECFDMRM-RSSAARINA 226 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~~g---~~~~~l~~h~~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t-~~~v~~l~~ 226 (702)
++ ..+..+..|...|++|+|+|++. +|++|+.||+|++||+++ ..++..+..
T Consensus 263 -----------------------~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 263 -----------------------NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp -----------------------CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred -----------------------CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 33 34456678889999999999985 899999999999999998 567888887
Q ss_pred ccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------------CeEEE-EeeccCCCCeEEEEEeeccC
Q 005325 227 VAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS--------------SYPIR-VKDHMFDSPIVDIKWHQSIN 291 (702)
Q Consensus 227 ~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs--------------~~~l~-~~~h~~~~~I~sl~fsp~~~ 291 (702)
| ...|++|+|+|++..+|++++.||.|+|||+.. ..++. ...| ..+|++++|+|
T Consensus 320 h------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p--- 388 (430)
T 2xyi_A 320 H------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNP--- 388 (430)
T ss_dssp C------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECS---
T ss_pred C------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECC---
Confidence 7 689999999999336799999999999999987 23333 3445 67899999998
Q ss_pred CCC-CeEEEeCCCEEEEEeCCC
Q 005325 292 TER-PKLITTDNHIVRIWDPET 312 (702)
Q Consensus 292 ~~~-~ll~ss~Dg~V~IWd~~t 312 (702)
++. .+++++.|+.|+||++..
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 344 344556899999999875
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=3.1e-22 Score=219.30 Aligned_cols=236 Identities=12% Similarity=0.148 Sum_probs=185.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEecCC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHAKYG 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~g 136 (702)
.+...+++++|+|+|.+ +++++.++.|++||+.+... .+..| ...+..+.+++++..+++++ .|+.|.+|+...
T Consensus 167 ~~~~~v~~~~~~~~~~~-~~s~~~d~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 167 KKLGFVETISIPEHNEL-WVSQMQANAVHVFDLKTLAYKATVDLT--GKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TTCCEEEEEEEGGGTEE-EEEEGGGTEEEEEETTTCCEEEEEECS--SSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccCCceeEEEEcCCCEE-EEEECCCCEEEEEECCCceEEEEEcCC--CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 35678999999999987 89999999999999987443 33333 33366777889999886555 799999999874
Q ss_pred ceEEEecCCC--ccceEEecCCCcEEEEe--------cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEE
Q 005325 137 KHYSLRIPRM--GRDMAYNSWSCDLLCAA--------SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGG 205 (702)
Q Consensus 137 ~~~~~~i~~~--~~~l~~~~~s~~llv~s--------~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs 205 (702)
......++.. ...+.+.+.+..+++++ .++.|++||+.+++.+..+ .|...+.+++|+|+++ ++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 244 KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET
T ss_pred CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec
Confidence 3333333332 33777777777788877 4778999999999887765 4455799999999996 557778
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCCeEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS---------------TGKVLIYDLRSSYPI 270 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---------------DG~V~lwDlrs~~~l 270 (702)
.|+.|.+||+.+++.+..+... ..+.+++|+|+ |.+|++++. ||.|.+||+.+++.+
T Consensus 323 ~~~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 323 CCSKIEVYDLKEKKVQKSIPVF-------DKPNTIALSPD-GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-------SSEEEEEECTT-SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCcEEEEecCC-------CCCCeEEEcCC-CCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 8999999999999888887644 78999999999 998888876 579999999999988
Q ss_pred EEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC
Q 005325 271 RVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET 312 (702)
Q Consensus 271 ~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t 312 (702)
....+ ...+.+++|+| ++..+++++ .|+.|+||++..
T Consensus 395 ~~~~~--~~~~~~~~~s~---dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 395 EFWEA--GNQPTGLDVSP---DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEC--SSSEEEEEECT---TSCEEEEEETTTTEEEEEEETT
T ss_pred EEecC--CCCCceEEEcC---CCCEEEEEECCCCeEEEEEecC
Confidence 76555 46799999998 445555565 499999999863
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.8e-22 Score=236.20 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=180.7
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECCC--CCEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETPD--GEFLI 78 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~SpD--G~~ll 78 (702)
.++||.. +++++.++.|+||++..+ . ...+..+ .|...|++++|+|+ +.+ |
T Consensus 17 ~s~dg~~-latg~~dg~I~vwd~~~~-~-----------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~-l 70 (753)
T 3jro_A 17 LDYYGKR-LATCSSDKTIKIFEVEGE-T-----------------------HKLIDTLTGHEGPVWRVDWAHPKFGTI-L 70 (753)
T ss_dssp CCSSSCC-EEEEETTTEEEEEEEETT-E-----------------------EEEEEEECCCSSCEEEEEECCTTSCSE-E
T ss_pred ECCCCCe-EEEEECCCcEEEEecCCC-C-----------------------CccceeccCCcCceEEEEecCCCCCCE-E
Confidence 3678774 577778889999999854 1 0122222 47889999999998 888 8
Q ss_pred EEEecCCcEEEEEcCCce----EEEeeecCCceEEEEEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCCccceEE
Q 005325 79 VSGIYPPQVKVYELRQLS----LKFERHLDSEIINFEVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAY 152 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~ 152 (702)
++|+.||.|++||+.+.. ..+..|.. .+..+.++|+ +..+++++.|+.|++|+.....
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-------------- 134 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-------------- 134 (753)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS--------------
T ss_pred EEEeCCCeEEEEECCCCcccccccccCCCC--CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC--------------
Confidence 999999999999998853 23344433 3666777888 8999999999999887764210
Q ss_pred ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-------------CCCEEEEEEcCCeEEEEECCCCc
Q 005325 153 NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-------------LHGLIACGGEDGAVECFDMRMRS 219 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-------------~~~llasgs~DG~V~iWD~~t~~ 219 (702)
......+..|...|++++|+| ++.+|++|+.||+|++||++++.
T Consensus 135 -----------------------~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 135 -----------------------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp -----------------------CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred -----------------------CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 011234567888999999999 48999999999999999999874
Q ss_pred ----ceeEEecccCCCCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCCeEE----EEeeccCCCCeEEEEEeec
Q 005325 220 ----SAARINAVAPAGDADQEVTALEFDSNG--GFLMGVGSSTGKVLIYDLRSSYPI----RVKDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 220 ----~v~~l~~~~~~~~~~~~Vtslafspd~--g~~LasGs~DG~V~lwDlrs~~~l----~~~~h~~~~~I~sl~fsp~ 289 (702)
.+..+..| ...|++++|+|++ +.+|++|+.||.|+|||++++... ......+..+|++++|+|
T Consensus 192 ~~~~~~~~~~~h------~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp- 264 (753)
T 3jro_A 192 QTYVLESTLEGH------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL- 264 (753)
T ss_dssp TEEEEEEEECCC------SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-
T ss_pred ccceeeeeecCC------CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-
Confidence 44455555 7899999999985 689999999999999999986421 111222367899999998
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCC
Q 005325 290 INTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
++..+++++.|+.|+||++.+
T Consensus 265 --dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 --SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp --TTCCEEEECSSSCEECCBCCS
T ss_pred --CCCEEEEEcCCCEEEEEecCC
Confidence 556676777899999999984
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=1.2e-20 Score=214.82 Aligned_cols=315 Identities=9% Similarity=0.034 Sum_probs=219.7
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
+++|. +++....++.|.||++..+ + +++.+.....+.+++|||||++ |++++
T Consensus 146 ~p~~~-~~vs~~~d~~V~v~D~~t~-~-------------------------~~~~i~~g~~~~~v~~spdg~~-l~v~~ 197 (543)
T 1nir_A 146 DLPNL-FSVTLRDAGQIALVDGDSK-K-------------------------IVKVIDTGYAVHISRMSASGRY-LLVIG 197 (543)
T ss_dssp CGGGE-EEEEEGGGTEEEEEETTTC-C-------------------------EEEEEECSTTEEEEEECTTSCE-EEEEE
T ss_pred CCCCE-EEEEEcCCCeEEEEECCCc-e-------------------------EEEEEecCcccceEEECCCCCE-EEEEC
Confidence 45554 3444556778999998887 2 2233332233789999999999 77778
Q ss_pred cCCcEEEEEc--CCceEEEeeecCCceEEEEEEcC----CCCEEEEEEC-CCeEEEEecCCceEEEecCC----------
Q 005325 83 YPPQVKVYEL--RQLSLKFERHLDSEIINFEVLAD----DYSKLAFLCA-DRSISLHAKYGKHYSLRIPR---------- 145 (702)
Q Consensus 83 ~dg~I~vwdl--~~~~~~~~~h~~~~vv~~~~ls~----dg~~Las~s~-D~~I~iw~~~g~~~~~~i~~---------- 145 (702)
.++.|.+||+ .+......-.... ....+.++| |+++|++++. +++|.+|+.........++.
T Consensus 198 ~d~~V~v~D~~~~t~~~~~~i~~g~-~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 198 RDARIDMIDLWAKEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp TTSEEEEEETTSSSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred CCCeEEEEECcCCCCcEEEEEecCC-CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence 8899999999 6644432222233 345667899 9999988874 89999999873222222211
Q ss_pred ----CccceEEecCCCcEEE-EecCCCEEEEECCCCeEEE--EeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCC
Q 005325 146 ----MGRDMAYNSWSCDLLC-AASSPELYRINLEQGRFLS--SLNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDMRM 217 (702)
Q Consensus 146 ----~~~~l~~~~~s~~llv-~s~d~~V~vwdl~~g~~~~--~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t 217 (702)
....+.+.+....+++ ...++.|.+||+.++..+. .+ .+...+.+++|+|++++|++++ .+++|.+||+.+
T Consensus 277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence 1125666666666544 4456789999998865443 33 3556788999999999766554 589999999999
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------CeEEE-EeeccCCCCeEEEEEee
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRS-------SYPIR-VKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs-------~~~l~-~~~h~~~~~I~sl~fsp 288 (702)
++++..+.... ..|......+ ++|+++..++++. .|++|.|||+.+ .+++. +..| +..+..|+|||
T Consensus 356 g~l~~~i~~g~--~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~p 430 (543)
T 1nir_A 356 RRLSALVDVGK--TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHP 430 (543)
T ss_dssp TEEEEEEECSS--SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCT
T ss_pred CeEEEeeccCC--CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCC
Confidence 99988887531 1123333333 5777466667765 589999999988 77776 5556 56778899998
Q ss_pred ccCCCCCeEEEe-------CCCEEEEEeCCCCcee-EEe--------cCCCCceeEEEEEcCCCEEEEEe-----CCCcE
Q 005325 289 SINTERPKLITT-------DNHIVRIWDPETGESM-TSI--------EPTAGKINDVCVFKDSGLLLLAL-----DCSQI 347 (702)
Q Consensus 289 ~~~~~~~ll~ss-------~Dg~V~IWd~~tg~~l-~~i--------~~h~~~I~~v~~~p~~~~l~~a~-----~d~~I 347 (702)
++..+.+++ .+++|.|||+.+++.. ..+ ..|...+..+.|+|++..++++. .++.|
T Consensus 431 ---dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 431 ---KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp ---TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred ---CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 344444443 1679999999998877 454 34577899999999999888773 36889
Q ss_pred EEEEcCCC
Q 005325 348 PSYFIPDL 355 (702)
Q Consensus 348 ~~~~ip~l 355 (702)
.+|....+
T Consensus 508 ~v~D~~t~ 515 (543)
T 1nir_A 508 VVVDDKTL 515 (543)
T ss_dssp EEEETTTT
T ss_pred EEEECCCc
Confidence 99876543
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1.6e-20 Score=206.63 Aligned_cols=233 Identities=13% Similarity=0.125 Sum_probs=178.4
Q ss_pred CcEEEEEcCCc-eEEEeeecCCceEEEEEEcCCCCEEEEEECCC---eEEEEecC-CceEEEec-CCCccceEEecCCCc
Q 005325 85 PQVKVYELRQL-SLKFERHLDSEIINFEVLADDYSKLAFLCADR---SISLHAKY-GKHYSLRI-PRMGRDMAYNSWSCD 158 (702)
Q Consensus 85 g~I~vwdl~~~-~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~---~I~iw~~~-g~~~~~~i-~~~~~~l~~~~~s~~ 158 (702)
+.|++||+... ...+..|... +....++||+++|++++.++ .|.+|++. +....+.. +....++.+.|.+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~--v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQP--LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSC--EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCEEEeCCCCc--ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence 79999999863 3455566433 67778999999999999885 99999987 44433322 223347788887777
Q ss_pred EE-EEecCCC--EEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCcceeEEecccCCCC
Q 005325 159 LL-CAASSPE--LYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG--AVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 159 ll-v~s~d~~--V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG--~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+++.|++++. ++ .|.+||+.++.. ..+..+
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~----- 309 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE----- 309 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-----
T ss_pred EEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-----
Confidence 76 4444444 99999999876 567778889999999999998888886 45 688889987763 334333
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCC---EEE
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSST---GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNH---IVR 306 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~D---G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg---~V~ 306 (702)
...+.+++|+|+ |.+|++++.+ ..|.+||+.+++...+..+ . .+.+++|+| ++..+++++.++ .|.
T Consensus 310 -~~~~~~~~~spd-G~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~--~-~~~~~~~sp---dg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 310 -GSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQVLSST--F-LDETPSLAP---NGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp -SSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCCEEECCCS--S-SCEEEEECT---TSSEEEEEEEETTEEEEE
T ss_pred -CCcccCeEECCC-CCEEEEEECcCCceEEEEEECCCCCEEEecCC--C-CcCCeEEcC---CCCEEEEEEcCCCccEEE
Confidence 468899999999 9999988764 5899999999887665555 2 889999998 445555666544 899
Q ss_pred EEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 307 IWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 307 IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
+||+. +..+..+..|.+.|.+++|+|..
T Consensus 382 ~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 382 LVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99987 66677899989999999999954
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=1.3e-21 Score=213.50 Aligned_cols=258 Identities=12% Similarity=-0.015 Sum_probs=158.6
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc-cCCCceeEEEECC--------CCCEEEE
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL-WFETATTKIRETP--------DGEFLIV 79 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~-~~~~~v~~i~~Sp--------DG~~lla 79 (702)
++..++.+++|+||++..+ ... ...++..+ .|...|++|+|+| ||++ ||
T Consensus 103 ~las~~~d~~v~lw~~~~~-~~~--------------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~-la 160 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNE-TII--------------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV-IA 160 (393)
T ss_dssp EEEEEETTSCEEEEEEETT-EEE--------------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE-EE
T ss_pred EEEEEeCCCcEEEEECCCC-ccc--------------------eeeeecccCCCCCceEEEEEccccccccCCCCCE-EE
Confidence 4566788999999999887 110 11223333 4889999999998 7888 99
Q ss_pred EEecCCcEEEEEcCCc--eEEEeeecCCceEEEEEEcCCC-CEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCC
Q 005325 80 SGIYPPQVKVYELRQL--SLKFERHLDSEIINFEVLADDY-SKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWS 156 (702)
Q Consensus 80 tGs~dg~I~vwdl~~~--~~~~~~h~~~~vv~~~~ls~dg-~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s 156 (702)
+|+.|++|+|||+.+. ...+..| ...+. .+.++|++ .+|++++.|++|++|+............... .
T Consensus 161 s~s~D~tv~~Wd~~~~~~~~~~~~~-~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-------~ 231 (393)
T 4gq1_A 161 SVGDDCTLIIWRLTDEGPILAGYPL-SSPGI-SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-------V 231 (393)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEEC-SSCEE-EEEEETTEEEEEEEEETTSEEEEEETTCCC-----------------C
T ss_pred EEECCCeEEEEECCCCceeeeecCC-CCCcE-EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-------c
Confidence 9999999999999763 3345555 34444 45566665 5799999999999999873222111110000 0
Q ss_pred CcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC-----
Q 005325 157 CDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRS-KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA----- 230 (702)
Q Consensus 157 ~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~s-p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~----- 230 (702)
....+..++...........+|...|.++.|+ |++..|++++.|++|++||+.++.....+..+...
T Consensus 232 -------~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 232 -------KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp -------SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred -------ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 00001111111111122345788899999986 78999999999999999999987766555444110
Q ss_pred --------CCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 231 --------GDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 231 --------~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
..+...+ .+.|+| .++.++++|+.||.|+|||+.++.++. ...| ..+|.+|+|+| ++.+|+++
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafsp----dG~~LA~a 377 (393)
T 4gq1_A 305 LLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQ----DGSHLAIA 377 (393)
T ss_dssp CSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECT----TSSEEEEE
T ss_pred EccccccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcC----CCCEEEEE
Confidence 0011222 233443 324567788899999999999987665 5566 67999999998 56666666
Q ss_pred CCCEEEEEeCC
Q 005325 301 DNHIVRIWDPE 311 (702)
Q Consensus 301 ~Dg~V~IWd~~ 311 (702)
.++.|.+|.+.
T Consensus 378 s~~Gv~lvrL~ 388 (393)
T 4gq1_A 378 TEGSVLLTRLM 388 (393)
T ss_dssp ESSEEEEEEEG
T ss_pred eCCCeEEEEEe
Confidence 55667777653
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=3.6e-20 Score=195.38 Aligned_cols=214 Identities=11% Similarity=0.083 Sum_probs=143.5
Q ss_pred ceeEEEECCC----CCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE--CCCeEEEEecC--
Q 005325 64 ATTKIRETPD----GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC--ADRSISLHAKY-- 135 (702)
Q Consensus 64 ~v~~i~~SpD----G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s--~D~~I~iw~~~-- 135 (702)
.|++|+|||| +++ +++++. .+.||++ ++++.+.++. .|+.|++|++.
T Consensus 113 ~v~sla~spd~~~~~~~-l~s~g~--~~~v~~l----------------------~~g~lv~ss~~g~d~~V~~~~~s~d 167 (356)
T 2w18_A 113 EIRALFCSSDDESEKQV-LLKSGN--IKAVLGL----------------------TKRRLVSSSGTLSDQQVEVMTFAED 167 (356)
T ss_dssp EEEEECC------CCEE-EEEEEE--EEEEEEE----------------------TTTEEEEEESSSTTCEEEEEEECTT
T ss_pred ceEEEEECCCccccccE-EEeCCC--eEEEEec----------------------CCCcEEEecccCCCCcEEEEEECCC
Confidence 5667777777 777 455543 2556643 2333333322 48888888774
Q ss_pred CceEE-Ee-cCCCccceEEec---CCCcEEEEecCCCEEEEECCCCeEEEEeecCC---CCeEEEEEcCCCCEE------
Q 005325 136 GKHYS-LR-IPRMGRDMAYNS---WSCDLLCAASSPELYRINLEQGRFLSSLNTQS---PALNVVSRSKLHGLI------ 201 (702)
Q Consensus 136 g~~~~-~~-i~~~~~~l~~~~---~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~---~~V~~l~~sp~~~ll------ 201 (702)
|.... .. .+.....+.+.+ ....|++++.|++|++||+.+|+++.++.+|. ..|.+++|+|++.++
T Consensus 168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 33222 22 333444667766 33447778999999999999999999998754 368888999999776
Q ss_pred ------EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-ee
Q 005325 202 ------ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KD 274 (702)
Q Consensus 202 ------asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~ 274 (702)
++|+.|++|++||+.++..+..+.... ..+|...+.+..++ +..+|+|+.|++|+|||+.+++++.. .+
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp ----------CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred CCcceeeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 678889999999999998887664321 11233445444444 78999999999999999999998884 45
Q ss_pred ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeC
Q 005325 275 HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDP 310 (702)
Q Consensus 275 h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~ 310 (702)
|. ...+.+++|+| ++..+++++.|++|+|||+
T Consensus 324 H~-~~vvs~vafSP---DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VS-DQHWSFVKWSG---TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C---CCCCEEEECS---SSSEEEEECTTSCEEEEEE
T ss_pred CC-CCeEEEEEECC---CCCEEEEEECCCcEEEecC
Confidence 62 23455699998 4455556668999999985
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.1e-19 Score=192.66 Aligned_cols=276 Identities=9% Similarity=0.074 Sum_probs=207.5
Q ss_pred ccCCCceeEEEECCCCCEEEEEEec------CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEE
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIY------PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISL 131 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~------dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~i 131 (702)
......+..++|+|||++++++... ++.|.+||+.+............ ...+.+++++++++.+ ..++.|.+
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEEECCCCCEEEEEecCCCEEEE
Confidence 3455678899999999996555533 67899999988544222222222 3345678898866555 45799999
Q ss_pred EecCC-ce-EEEecCCC----------ccceEEecCCCcEEEEe--cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCC
Q 005325 132 HAKYG-KH-YSLRIPRM----------GRDMAYNSWSCDLLCAA--SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKL 197 (702)
Q Consensus 132 w~~~g-~~-~~~~i~~~----------~~~l~~~~~s~~llv~s--~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~ 197 (702)
|+... .. ..+..+.. ...+.+.+.+..+++++ .++.|++||+.+++.+..+..+...+.+++|+|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence 99873 33 22333221 24678888887788776 3677999999999999888766667899999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeecc
Q 005325 198 HGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLRSSYPIRVKDHM 276 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlrs~~~l~~~~h~ 276 (702)
++.|++++.++.|.+||+.+++.+..+.... ..+...+.+++|+|+ +.+|++++. ++.|.+||+.+++.+.....
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~- 271 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLD--DGKEHFFINISLDTA-RQRAFITDSKAAEVLVVDTRNGNILAKVAA- 271 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETT-TTEEEEEESSSSEEEEEETTTCCEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEc-
Confidence 9999999999999999999999888877631 112457889999999 887766655 59999999999988764443
Q ss_pred CCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 277 FDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 277 ~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
+.+ ..++|+| ++..+++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++..|++++.++
T Consensus 272 -~~~-~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 -PES-LAVLFNP---ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -SSC-CCEEEET---TTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred -CCC-ceEEECC---CCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 223 5699998 444466666 689999999999999988887 56889999999999888877653
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=4.9e-19 Score=186.39 Aligned_cols=291 Identities=9% Similarity=0.072 Sum_probs=191.2
Q ss_pred EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC
Q 005325 14 TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR 93 (702)
Q Consensus 14 s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~ 93 (702)
..++.|.+|++... .. ...++.+.+...+.+++|+|||++|++++..++.|.+|++.
T Consensus 12 ~~~~~v~~~~~~~~-~~----------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 12 PESQQIHVWNLNHE-GA----------------------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp GGGTEEEEEEECTT-SC----------------------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCeEEEEEECCC-Cc----------------------EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 56788999999643 11 12334455677889999999999944444444999999997
Q ss_pred --CceEE--EeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC-Cc--e--EEEecCCCccceEEecCCCcEEEEe
Q 005325 94 --QLSLK--FERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKY-GK--H--YSLRIPRMGRDMAYNSWSCDLLCAA 163 (702)
Q Consensus 94 --~~~~~--~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~-g~--~--~~~~i~~~~~~l~~~~~s~~llv~s 163 (702)
+..+. ....... ....+.+++++.+|++++. ++.|.+|+.. +. . ..+.......++.+.+.+..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 69 PDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred CCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec
Confidence 32221 1111122 2455668999998877765 8899999883 21 1 1122233445888888888888887
Q ss_pred -cCCCEEEEECCC-CeEEE----EeecC-CCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCC--Ccc--eeEEecccCCC
Q 005325 164 -SSPELYRINLEQ-GRFLS----SLNTQ-SPALNVVSRSKLHGLIACGG-EDGAVECFDMRM--RSS--AARINAVAPAG 231 (702)
Q Consensus 164 -~d~~V~vwdl~~-g~~~~----~l~~h-~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t--~~~--v~~l~~~~~~~ 231 (702)
.++.|++||+.+ ++... .+..+ ...+.+++|+|++.+|++++ .++.|.+||+.. +.. +..+.......
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 788999999987 65532 23333 34788999999998665554 789999999964 332 22222110001
Q ss_pred CCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcC--CC--eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEE
Q 005325 232 DADQEVTALEFDSNGGFLMGV-GSSTGKVLIYDLR--SS--YPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIV 305 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~Las-Gs~DG~V~lwDlr--s~--~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V 305 (702)
.....+.+++|+|+ |.+|++ +..++.|.+||+. ++ +.+..... ...+.+++|+| ++..+++++ .++.|
T Consensus 228 ~~~~~~~~i~~s~d-g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~s~---dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 228 SDTRWAADIHITPD-GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVDH---SGKYLIAAGQKSHHI 301 (343)
T ss_dssp CSCCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEECT---TSSEEEEECTTTCEE
T ss_pred cccCCccceEECCC-CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccceEEECC---CCCEEEEecCCCCeE
Confidence 11346778999999 877764 4579999999998 33 33332322 23488999998 444466666 58999
Q ss_pred EEE--eCCCCc--eeEEecCCCCceeEEEEEcCC
Q 005325 306 RIW--DPETGE--SMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 306 ~IW--d~~tg~--~l~~i~~h~~~I~~v~~~p~~ 335 (702)
.|| |..+++ .+..+.. .....+++|.|+.
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred EEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 999 544664 4455555 4566778887754
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=1.1e-20 Score=207.97 Aligned_cols=272 Identities=10% Similarity=0.059 Sum_probs=198.4
Q ss_pred CceeEEEECCCCCEEEEEEe----cCC----cEEEEEc--CCce----EEEeeecCCceEEEEEEc--------------
Q 005325 63 TATTKIRETPDGEFLIVSGI----YPP----QVKVYEL--RQLS----LKFERHLDSEIINFEVLA-------------- 114 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs----~dg----~I~vwdl--~~~~----~~~~~h~~~~vv~~~~ls-------------- 114 (702)
..++...|++.|..++++|+ .+| .|++||+ .+.. ..+..|... + ..+.++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW-L-RYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGG-H-HHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhH-H-HHHHHHHHHHHHHHHcCCCC
Confidence 46778889999987688887 357 8999999 6633 234444322 1 111111
Q ss_pred CCCCEEEEEECC------CeEEEEecCCceEE-E-ecCCCccceEEecCCCcEEEEecCC---CEEEEECCCCeEEEEee
Q 005325 115 DDYSKLAFLCAD------RSISLHAKYGKHYS-L-RIPRMGRDMAYNSWSCDLLCAASSP---ELYRINLEQGRFLSSLN 183 (702)
Q Consensus 115 ~dg~~Las~s~D------~~I~iw~~~g~~~~-~-~i~~~~~~l~~~~~s~~llv~s~d~---~V~vwdl~~g~~~~~l~ 183 (702)
+.+..+++++.+ +.|.+|+..+.... + .......++.+.|.+..+++++.++ .|++||+.+++.. .+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 125677777764 79999999864322 2 2233444788888888888888775 8999999999875 466
Q ss_pred cCCCCeEEEEEcCCCCEEE-EEEcCCe--EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--
Q 005325 184 TQSPALNVVSRSKLHGLIA-CGGEDGA--VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG-- 257 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~~lla-sgs~DG~--V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG-- 257 (702)
.|...+.+++|+|++..|+ +++.++. |.+||+.+++. ..+..+ ...+++++|+|+ |.+|++++. ++
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~------~~~~~~~~~spd-g~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG------RSNNTEPTWFPD-SQNLAFTSDQAGRP 291 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC------SSCEEEEEECTT-SSEEEEEECTTSSC
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC------CCcccceEECCC-CCEEEEEECCCCCc
Confidence 7888999999999998777 6666654 99999998765 444444 578999999999 999988876 44
Q ss_pred eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 258 KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 258 ~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.|.+||+.+++...+..+ +..+.+++|+| ++..+++++. +..|.+||+.+++.. .+..|. .+.+++|+|+
T Consensus 292 ~i~~~d~~~~~~~~l~~~--~~~~~~~~~sp---dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spd 364 (415)
T 2hqs_A 292 QVYKVNINGGAPQRITWE--GSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPN 364 (415)
T ss_dssp EEEEEETTSSCCEECCCS--SSEEEEEEECT---TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTT
T ss_pred EEEEEECCCCCEEEEecC--CCcccCeEECC---CCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCC
Confidence 688889988876555555 56789999998 4444555553 368999999988774 566654 8999999999
Q ss_pred CCEEEEEeCCC---cEEEEEc
Q 005325 335 SGLLLLALDCS---QIPSYFI 352 (702)
Q Consensus 335 ~~~l~~a~~d~---~I~~~~i 352 (702)
+.+|++++.++ .|.+|.+
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEET
T ss_pred CCEEEEEEcCCCccEEEEEEC
Confidence 99888887766 5666654
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=4.7e-19 Score=186.65 Aligned_cols=283 Identities=9% Similarity=0.021 Sum_probs=188.9
Q ss_pred CCccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEE
Q 005325 1 MASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 1 ~~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llat 80 (702)
|.+.++..+++..+.++.|.+|++.++ +.+ ..+. +. ...+ +++|+|||++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~----------------------~~~~-~~-~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL-EIL----------------------NQIT-LG-YDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC-CEE----------------------EEEE-CC-CCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc-cee----------------------eeEE-cc-CCcc-eEEEcCCCCEEEEE
Confidence 455666655566667888999999887 221 1111 11 2334 89999999997777
Q ss_pred EecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCC---eEEEEecCCceEE--EecCCCccceEEec
Q 005325 81 GIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADR---SISLHAKYGKHYS--LRIPRMGRDMAYNS 154 (702)
Q Consensus 81 Gs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~---~I~iw~~~g~~~~--~~i~~~~~~l~~~~ 154 (702)
+..++.|.+||+.+... .........+...+.+++++.+|++...++ .|.+|+....... +........+.+.+
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp 137 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP 137 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC
Confidence 77789999999987443 222222233344367899999998544442 8999998743322 33333345888888
Q ss_pred CCCcEEEEecC-CC-EEEEECCCCeEE----EEeecCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEECCCCcc---eeEE
Q 005325 155 WSCDLLCAASS-PE-LYRINLEQGRFL----SSLNTQSPALNVVSRSKLHGLI-ACGGEDGAVECFDMRMRSS---AARI 224 (702)
Q Consensus 155 ~s~~llv~s~d-~~-V~vwdl~~g~~~----~~l~~h~~~V~~l~~sp~~~ll-asgs~DG~V~iWD~~t~~~---v~~l 224 (702)
.+..+++++.+ +. |.+|++.....+ .....+...+.+++|+|+++++ +++..++.|.+||+.+++. +..+
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec
Confidence 88777777554 78 999998754322 1112334568999999999855 4555689999999999888 7777
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCeEEE--Eeecc---CCC---CeEEEEEeeccCCCCC
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSYPIR--VKDHM---FDS---PIVDIKWHQSINTERP 295 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~~l~--~~~h~---~~~---~I~sl~fsp~~~~~~~ 295 (702)
... ..+.+++|+|+ |.+|++++ .++.|.+||+.+++... ..... +.. .+..++|+| ++..
T Consensus 218 ~~~-------~~~~~~~~spd-g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~ 286 (331)
T 3u4y_A 218 GTN-------NLPGTIVVSRD-GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK---TETK 286 (331)
T ss_dssp ECS-------SCCCCEEECTT-SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT---TSSE
T ss_pred cCC-------CCCceEEECCC-CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC---CCCE
Confidence 655 67889999999 88776654 57889999999988632 21110 111 225689998 4555
Q ss_pred eEEEe-CCCEEEEEeCCCCceeEEecC
Q 005325 296 KLITT-DNHIVRIWDPETGESMTSIEP 321 (702)
Q Consensus 296 ll~ss-~Dg~V~IWd~~tg~~l~~i~~ 321 (702)
+++++ +++.|.|||+.+.. +..+..
T Consensus 287 l~v~~~~~~~v~v~d~~~~~-~~~~~~ 312 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKV-VGYVAG 312 (331)
T ss_dssp EEEEETTTTEEEEEETTSCE-EEECTT
T ss_pred EEEecCCCCcEEEEEecCCc-ccceec
Confidence 55555 57899999997643 334443
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=8.9e-19 Score=184.54 Aligned_cols=277 Identities=10% Similarity=0.065 Sum_probs=194.5
Q ss_pred EEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC-Cc--eEEEec
Q 005325 68 IRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCA-DRSISLHAKY-GK--HYSLRI 143 (702)
Q Consensus 68 i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~-g~--~~~~~i 143 (702)
..|++++.+++++++.++.|.+||+.+.............. .+.+++++.++++++. ++.|.+|+.. +. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45778888889999999999999998754433322233334 7789999997777666 8999999987 33 223333
Q ss_pred CCCccc-eEEecCCCcEEEEecCC---CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-EEEEEEcCCe-EEEEECCC
Q 005325 144 PRMGRD-MAYNSWSCDLLCAASSP---ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-LIACGGEDGA-VECFDMRM 217 (702)
Q Consensus 144 ~~~~~~-l~~~~~s~~llv~s~d~---~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-llasgs~DG~-V~iWD~~t 217 (702)
...... +.+.+.+..++++..++ .|++||+.+++.+..+..+. .+.+++|+|+++ +++++..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 334445 88888877777444442 89999999999988876554 579999999996 5555566688 99999986
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCCeE---EEEeeccCCCCeEEEEEeeccCCC
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGV-GSSTGKVLIYDLRSSYP---IRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~DG~V~lwDlrs~~~---l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
...+...... .......+.+++|+|+ |.+|++ +..++.|.+||+.+++. +..... +..+..++|+| ++
T Consensus 161 ~g~~~~~~~~--~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~sp---dg 232 (331)
T 3u4y_A 161 DGVLFDTGQE--FISGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSR---DG 232 (331)
T ss_dssp TCCEEEEEEE--EECSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECT---TS
T ss_pred CCcEeecCCc--cccCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECC---CC
Confidence 4433222100 0011356899999999 886554 45689999999998886 554444 45778999998 34
Q ss_pred CCeEEEe-CCCEEEEEeCCCCce--eEEecCC----CC---ceeEEEEEcCCCEEEEEeC-CCcEEEEEcCC
Q 005325 294 RPKLITT-DNHIVRIWDPETGES--MTSIEPT----AG---KINDVCVFKDSGLLLLALD-CSQIPSYFIPD 354 (702)
Q Consensus 294 ~~ll~ss-~Dg~V~IWd~~tg~~--l~~i~~h----~~---~I~~v~~~p~~~~l~~a~~-d~~I~~~~ip~ 354 (702)
..+++++ .++.|.+||+.+++. +..+..+ .. .++.++|+|++..|++++. ++.|.+|.+..
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 4455554 578899999999887 4444332 22 2356899999998877665 55899998754
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=2e-19 Score=204.83 Aligned_cols=274 Identities=12% Similarity=0.081 Sum_probs=208.5
Q ss_pred EECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEec--CC-ce-EEEecC
Q 005325 69 RETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAK--YG-KH-YSLRIP 144 (702)
Q Consensus 69 ~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~--~g-~~-~~~~i~ 144 (702)
+|+|++.+ +++++.++.|.+||..+..+......... +..+.++||+++|++++.|++|.+|++ .. .. ..+...
T Consensus 144 ~~~p~~~~-~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 144 DLDLPNLF-SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CCCGGGEE-EEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCEE-EEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 48998865 89999999999999988544222221222 567779999999999999999999999 43 22 223333
Q ss_pred CCccceEEec----CCCcEEEEec-CCCEEEEECCCCeEEEEeecC-----------CCCeEEEEEcCCC-CEEEEEEcC
Q 005325 145 RMGRDMAYNS----WSCDLLCAAS-SPELYRINLEQGRFLSSLNTQ-----------SPALNVVSRSKLH-GLIACGGED 207 (702)
Q Consensus 145 ~~~~~l~~~~----~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h-----------~~~V~~l~~sp~~-~llasgs~D 207 (702)
...+.+++++ .+..+++++. ++.|.+||..+++++..+..+ ...+.++.++|++ .++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 3345888888 6777888874 789999999999999888652 2378999999977 556677779
Q ss_pred CeEEEEECCCCccee--EEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeecc---CCCCe
Q 005325 208 GAVECFDMRMRSSAA--RINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSSYPIRVKDHM---FDSPI 281 (702)
Q Consensus 208 G~V~iWD~~t~~~v~--~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~~~l~~~~h~---~~~~I 281 (702)
+.|.+||+.+.+.+. .+.. ...+..++|+|+ |.+|+++ ..+++|.+||+.+++++...... +....
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~-------~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGA-------APFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 373 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEEC-------CSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred CeEEEEEecCCCcceeEEecc-------CcCccCceECCC-CCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC
Confidence 999999999876554 4432 366889999999 8877655 46899999999999987743310 12222
Q ss_pred EEEEEeeccCCCCCeEEEe--CCCEEEEEeCCC-------CceeEEecCCCCceeEEEEEcCCCEEEEEeC-------CC
Q 005325 282 VDIKWHQSINTERPKLITT--DNHIVRIWDPET-------GESMTSIEPTAGKINDVCVFKDSGLLLLALD-------CS 345 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss--~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~-------d~ 345 (702)
..+ ++| +++.+++++ .|++|.|||+.+ ++++.++..|...+..|+++|++..|++++. +.
T Consensus 374 ~~~-~~p---~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 374 ANF-VHP---KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp EEE-EET---TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred ccc-CCC---CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence 233 455 346666665 589999999998 8999999998889999999999999999872 67
Q ss_pred cEEEEEcCCCC
Q 005325 346 QIPSYFIPDLG 356 (702)
Q Consensus 346 ~I~~~~ip~lg 356 (702)
.|.+|.+..+.
T Consensus 450 ~v~v~d~~~~~ 460 (543)
T 1nir_A 450 SVAVFDLKNLD 460 (543)
T ss_dssp CEEEEETTCTT
T ss_pred eEEEEECCCCC
Confidence 99999988764
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=3e-19 Score=187.56 Aligned_cols=272 Identities=11% Similarity=-0.008 Sum_probs=197.6
Q ss_pred ceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCC---ceeEEEECCCCCEEEEEEecCC
Q 005325 9 NAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFET---ATTKIRETPDGEFLIVSGIYPP 85 (702)
Q Consensus 9 ~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~---~v~~i~~SpDG~~llatGs~dg 85 (702)
+++..+.++.|.+|++..+ + ++..+.++. .+.+++|+|||+++++++..++
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~ 56 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-A-------------------------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-E-------------------------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEECCCC-c-------------------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCC
Confidence 4667778899999999887 2 223333444 5788999999999788888889
Q ss_pred cEEEEEcCCceEEEeeecCC-----ceEEEEEEcCCCCEEEEEE------------CCCeEEEEecCCceEE--EecCCC
Q 005325 86 QVKVYELRQLSLKFERHLDS-----EIINFEVLADDYSKLAFLC------------ADRSISLHAKYGKHYS--LRIPRM 146 (702)
Q Consensus 86 ~I~vwdl~~~~~~~~~h~~~-----~vv~~~~ls~dg~~Las~s------------~D~~I~iw~~~g~~~~--~~i~~~ 146 (702)
.|.+||+.+........... .....+.+++++.+|++++ .++.|.+|+....... +.....
T Consensus 57 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 136 (337)
T 1pby_B 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ 136 (337)
T ss_dssp EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS
T ss_pred eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC
Confidence 99999998744322111111 0123456889999998886 6799999998753322 333444
Q ss_pred ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC-----------------
Q 005325 147 GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG----------------- 208 (702)
Q Consensus 147 ~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG----------------- 208 (702)
...+.+.+.+..++++ ++.|++||+.+++.+..+..+.. ...+.|+|++..|++.+. ++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence 4578888887778777 68999999999998877765541 112378898865544433 22
Q ss_pred ------eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeE
Q 005325 209 ------AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIV 282 (702)
Q Consensus 209 ------~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~ 282 (702)
.|.+||+.+++.. .+... .+...+.+++|+|+ |.+|+++ ++.|.+||+.+++.+..... +..+.
T Consensus 214 ~~~~~~~v~~~d~~~~~~~-~~~~~----~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~ 283 (337)
T 1pby_B 214 PTAYRTGLLTMDLETGEMA-MREVR----IMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYY 283 (337)
T ss_dssp GGGEEEEEEEEETTTCCEE-EEEEE----ECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCC
T ss_pred ccccccceEEEeCCCCCce-EeecC----CCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceecC--CCcee
Confidence 4789999988765 33332 12467889999999 9998888 79999999999988775444 35678
Q ss_pred EEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC
Q 005325 283 DIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h 322 (702)
+++|+| ++..+++++.++.|.+||+.+++.+..+..+
T Consensus 284 ~~~~s~---dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 284 SVNVST---DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEECT---TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eEEECC---CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 999998 4555667777999999999999998888764
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=2.2e-19 Score=211.22 Aligned_cols=267 Identities=10% Similarity=0.064 Sum_probs=193.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc---eE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL---SL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH 138 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~---~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~ 138 (702)
..+.+++|||||++ |++++. +.|.+||+.+. .. .+..+. ..+....+||||++|++++. +.|.+|+..+..
T Consensus 109 ~~v~~~~~SpDg~~-l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQR-LLFPLG-GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSE-EEEEET-TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred cCcceeEECCCCCE-EEEEeC-CcEEEEECCCCCcceEEEcccCC--cccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 34788999999999 555554 99999999875 33 333332 23667789999999999884 689999987533
Q ss_pred EE-EecCCC------------------ccceEEecCCCcEEEEecCC---------------------------------
Q 005325 139 YS-LRIPRM------------------GRDMAYNSWSCDLLCAASSP--------------------------------- 166 (702)
Q Consensus 139 ~~-~~i~~~------------------~~~l~~~~~s~~llv~s~d~--------------------------------- 166 (702)
.. +..... ...+.+.+.+..|++++.++
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 22 211111 24688888888888887654
Q ss_pred CEEEEECCC-CeEEEEee--cCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 167 ELYRINLEQ-GRFLSSLN--TQSPALNVVSRSKLHGLIACGGE-----DGAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 167 ~V~vwdl~~-g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~-----DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
.|++||+.+ ++...... .|...+.+++| |+++.|++++. +..|.+||+.+++....+..+.. ..-..+.
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP--TWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS--SCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC--CcCCcCC
Confidence 789999998 87654433 36678999999 99998887764 57899999999987777665510 0001457
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcC-CCeEEEEeeccCCCCeEEE-EEeeccCCCCCeEEEe-CCC--EEEEEeCCC-
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLIYDLR-SSYPIRVKDHMFDSPIVDI-KWHQSINTERPKLITT-DNH--IVRIWDPET- 312 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~lwDlr-s~~~l~~~~h~~~~~I~sl-~fsp~~~~~~~ll~ss-~Dg--~V~IWd~~t- 312 (702)
+++|+|+ |.++++++.+|.+.||.+. .+....+..| ...|.++ .|+| ++..+++++ .++ .++||++..
T Consensus 341 ~~~~spd-g~~~~~~~~~g~~~l~~~~~~~~~~~l~~~--~~~v~~~~~~s~---dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 341 SLRFLDD-GSILWSSERTGFQHLYRIDSKGKAAALTHG--NWSVDELLAVDE---KAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp CCEECTT-SCEEEEECTTSSCEEEEECSSSCEEESCCS--SSCEEEEEEEET---TTTEEEEEECSSCTTCBEEEEEETT
T ss_pred ceEECCC-CeEEEEecCCCccEEEEEcCCCCeeeeeec--ceEEEeEeEEeC---CCCEEEEEEeCCCCceEEEEEEEcC
Confidence 8999999 8899999999988888765 3333334445 5678887 5998 444555555 444 899999874
Q ss_pred CceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 313 GESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 313 g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
+..+..+.. ...+.+++|+|++..|++...+
T Consensus 415 g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 415 GGQPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp CCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred CCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 666777776 6778999999999988776544
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.5e-19 Score=185.26 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=164.5
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEee-ecCCceEEEEEEcCCCCEEEEEECC--CeEEEEecC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFER-HLDSEIINFEVLADDYSKLAFLCAD--RSISLHAKY 135 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~-h~~~~vv~~~~ls~dg~~Las~s~D--~~I~iw~~~ 135 (702)
.++..+.+++|+|||++ |++++ ++.|.+||+.+ ....... ......+..+.++|++..|++++.+ +.+.|
T Consensus 39 ~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l---- 112 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI---- 112 (297)
T ss_dssp EESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE----
T ss_pred cCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE----
Confidence 35788999999999999 56655 78999999987 4432222 2122234456678888888888743 33433
Q ss_pred CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEE
Q 005325 136 GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA-CGGEDGAVECFD 214 (702)
Q Consensus 136 g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla-sgs~DG~V~iWD 214 (702)
+.|++.++.. ..+..+. .+.+++|+|++..|+ +++.++.+.||+
T Consensus 113 ---------------------------------~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 113 ---------------------------------YLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp ---------------------------------EEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ---------------------------------EEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEE
Confidence 3355555442 3333333 488999999998776 788899999999
Q ss_pred CCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC-CCeEE-EEeeccCCCCeEEEEEeecc
Q 005325 215 MRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLR-SSYPI-RVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 215 ~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlr-s~~~l-~~~~h~~~~~I~sl~fsp~~ 290 (702)
+.. ......+..+ ...+.+++|+|+ +.+|++++ .++.+.||++. .+..+ .+..| ...+.+++|+|
T Consensus 158 ~~~~~~~~~~~~~~------~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~-- 226 (297)
T 2ojh_A 158 MDIDSGVETRLTHG------EGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSP-- 226 (297)
T ss_dssp EETTTCCEEECCCS------SSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECT--
T ss_pred EECCCCcceEcccC------CCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECC--
Confidence 643 2233444444 578999999999 88887766 58999999986 33333 34555 46789999998
Q ss_pred CCCCCeEEEeCC-----------CEEEEEeCCCCce--eEEecCCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 291 NTERPKLITTDN-----------HIVRIWDPETGES--MTSIEPTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 291 ~~~~~ll~ss~D-----------g~V~IWd~~tg~~--l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
++..+++++.+ ..|.+||+.+++. +..+..|...|.+++|+|++..|++++.+.
T Consensus 227 -dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 227 -SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 44555555543 5799999998865 445557788999999999999888887654
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=4.7e-19 Score=208.38 Aligned_cols=279 Identities=12% Similarity=0.060 Sum_probs=198.6
Q ss_pred CCceeEEEECCCCCEEEEEEec-CC-----cEEEEEcCCceE--EEeeecCC----------------------ceEEEE
Q 005325 62 ETATTKIRETPDGEFLIVSGIY-PP-----QVKVYELRQLSL--KFERHLDS----------------------EIINFE 111 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~-dg-----~I~vwdl~~~~~--~~~~h~~~----------------------~vv~~~ 111 (702)
...+.+++|||||++ |++++. ++ .|.+||+.+... .+..+... ..+..+
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999999 677776 87 899999987433 22222111 114456
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCc----eEEEecC-CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC
Q 005325 112 VLADDYSKLAFLCADRSISLHAKYGK----HYSLRIP-RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS 186 (702)
Q Consensus 112 ~ls~dg~~Las~s~D~~I~iw~~~g~----~~~~~i~-~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~ 186 (702)
.+||||++|++++. +.|.+|+..+. ...+... .....+.+.|.+..|++++ ++.|++||+.+++.......+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 78999999999987 99999998753 2222111 2233677777766666655 5689999999988766554444
Q ss_pred CC----------------eEEEEEcCCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 005325 187 PA----------------LNVVSRSKLHGLIACGGEDG---------------------------------AVECFDMRM 217 (702)
Q Consensus 187 ~~----------------V~~l~~sp~~~llasgs~DG---------------------------------~V~iWD~~t 217 (702)
.. +.+++|+|+++.|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 32 47899999999999988766 889999988
Q ss_pred -CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-----CCeEEEEEcCCCeEEEEeeccCCC---CeEEEEEee
Q 005325 218 -RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-----TGKVLIYDLRSSYPIRVKDHMFDS---PIVDIKWHQ 288 (702)
Q Consensus 218 -~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-----DG~V~lwDlrs~~~l~~~~h~~~~---~I~sl~fsp 288 (702)
++........ .+...+.+++| || |.+|++++. +..|.+||+.++++..+..+.... .+.+++|+|
T Consensus 273 ~~~~~~~~~~~----~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 273 QAQTQWIDLGK----EQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp TCCCEEECCCS----CSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred CCceEEecCCC----CcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 7754433221 23578999999 99 999987764 578999999998876643321122 456899998
Q ss_pred ccCCCCCeEEEe-CCCEEEEEeCC-CCceeEEecCCCCceeEE-EEEcCCCEEEE-EeCCC--cEEEEEcCC
Q 005325 289 SINTERPKLITT-DNHIVRIWDPE-TGESMTSIEPTAGKINDV-CVFKDSGLLLL-ALDCS--QIPSYFIPD 354 (702)
Q Consensus 289 ~~~~~~~ll~ss-~Dg~V~IWd~~-tg~~l~~i~~h~~~I~~v-~~~p~~~~l~~-a~~d~--~I~~~~ip~ 354 (702)
++.+++++ .++.++||.+. ++. +..+..|...|..+ +|+|++..|++ ++.++ .+.+|.++.
T Consensus 347 ----dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 347 ----DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ----TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ----CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 44455554 68877787765 455 77888888888887 59999987654 45554 788888764
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=2.2e-18 Score=181.37 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=187.3
Q ss_pred CCEEEEEEecCCcEEEEEcCC-c--eE-EEeeecCCceEEEEEEcCCCCEEEEEECC-CeEEEEecC---CceEE---Ee
Q 005325 74 GEFLIVSGIYPPQVKVYELRQ-L--SL-KFERHLDSEIINFEVLADDYSKLAFLCAD-RSISLHAKY---GKHYS---LR 142 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~-~--~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D-~~I~iw~~~---g~~~~---~~ 142 (702)
+++++++++.++.|.+|++.. . .. ....+ .. .+..+.++|++.+|++++.+ +.|.+|++. +.... +.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDV-PG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEec-CC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 456677778899999999962 2 22 22223 22 24556789999999988886 999999886 33222 22
Q ss_pred cCCCccceEEecCCCcEEEEec-CCCEEEEECC---CCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCC
Q 005325 143 IPRMGRDMAYNSWSCDLLCAAS-SPELYRINLE---QGRFLSSLNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~---~g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t 217 (702)
.+.....+++.+.+..+++++. ++.|++||+. ++..+..+..+. .+.+++|+|++++|++++ .++.|.+||+.+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 3344457888888877877776 6779999994 444555554443 589999999998888777 899999999987
Q ss_pred -Cccee----EEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC--CeE--EEEee-----ccCCCCeE
Q 005325 218 -RSSAA----RINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRS--SYP--IRVKD-----HMFDSPIV 282 (702)
Q Consensus 218 -~~~v~----~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs--~~~--l~~~~-----h~~~~~I~ 282 (702)
++... .+..+ ....+.+++|+|+ +.+|+++ ..++.|.+||+.. +.. +.... +.....+.
T Consensus 161 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTV-----EGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp TSCEEEEEEEEEECS-----TTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred CCceeeecccccccC-----CCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 54332 22222 1357889999999 8876555 4889999999954 433 22111 11123567
Q ss_pred EEEEeeccCCCCCeEEEe-CCCEEEEEeCC--C--CceeEEecCCCCceeEEEEEcCCCEEEEEe-CCCcEEEEEcC
Q 005325 283 DIKWHQSINTERPKLITT-DNHIVRIWDPE--T--GESMTSIEPTAGKINDVCVFKDSGLLLLAL-DCSQIPSYFIP 353 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~--t--g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ip 353 (702)
.++|+| ++..+++++ .++.|.+||+. + .+.+..+..+. .+.+++|+|++..|++++ .++.|.+|.+.
T Consensus 235 ~i~~s~---dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 235 DIHITP---DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECT---TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ceEECC---CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 899998 444565555 68999999998 3 34555666644 489999999999888888 57899999664
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=6.7e-18 Score=178.90 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=173.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEE--EeeecCCc-------eEEEEEEcCCCCEEEEEE--CCCeE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLK--FERHLDSE-------IINFEVLADDYSKLAFLC--ADRSI 129 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~--~~~h~~~~-------vv~~~~ls~dg~~Las~s--~D~~I 129 (702)
....+..++|+|||+++++++..++.|.+||+.+.... +..+.... ....+.+++++..+++++ .++.|
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 34557789999999987888888899999999874432 22221110 145577899999887776 47899
Q ss_pred EEEecCCceEEEecC---CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCCCEEE
Q 005325 130 SLHAKYGKHYSLRIP---RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLHGLIA 202 (702)
Q Consensus 130 ~iw~~~g~~~~~~i~---~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~~lla 202 (702)
.+|+.........++ .....+.+.+.+..+++++.++.|++||+.+++.+..+.. +...+.+++|+|+++.++
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999998544443343 2245889999888899999999999999999999887765 455788999999998766
Q ss_pred EEEc-CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCeEEEEeeccCCCC
Q 005325 203 CGGE-DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSYPIRVKDHMFDSP 280 (702)
Q Consensus 203 sgs~-DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~~l~~~~h~~~~~ 280 (702)
+++. ++.|.+||+.+++.+..+... . ..+++|+|+ |.++++++ .++.|.+||+.+++.+..... +..
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~-------~-~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~ 315 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAP-------E-SLAVLFNPA-RNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTH 315 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECS-------S-CCCEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcC-------C-CceEEECCC-CCEEEEEECCCCeEEEEECCCCeEEEEEec--CCC
Confidence 6655 599999999999988888765 2 257999999 88665555 689999999999988775544 457
Q ss_pred eEEEEEeeccCCCCCeEEEeCC
Q 005325 281 IVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~D 302 (702)
+.+++|+| ++..++++..+
T Consensus 316 ~~~~~~s~---dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 PNSLALSA---DGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEECT---TSCEEEEEEEC
T ss_pred CCeEEEcC---CCCEEEEEEcc
Confidence 89999998 44446665543
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=4.1e-19 Score=208.15 Aligned_cols=307 Identities=9% Similarity=0.056 Sum_probs=203.9
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccC-CCceeEEEECCCCCEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWF-ETATTKIRETPDGEFLIVS 80 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~-~~~v~~i~~SpDG~~llat 80 (702)
.||||. + +..+.+++|++|++.++ +.. .++..... ...+.+++|||||++ |++
T Consensus 24 ~spdg~-~-~~~~~dg~i~~~d~~~g-~~~----------------------~~~~~~~~~~~~v~~~~~SpDg~~-l~~ 77 (723)
T 1xfd_A 24 WISDTE-F-IYREQKGTVRLWNVETN-TST----------------------VLIEGKKIESLRAIRYEISPDREY-ALF 77 (723)
T ss_dssp BSSSSC-B-CCCCSSSCEEEBCGGGC-CCE----------------------EEECTTTTTTTTCSEEEECTTSSE-EEE
T ss_pred EcCCCc-E-EEEeCCCCEEEEECCCC-cEE----------------------EEeccccccccccceEEECCCCCE-EEE
Confidence 478988 3 44467888999999988 221 11111000 114789999999999 566
Q ss_pred EecC---------CcEEEEEcCCceE-EEeeecC-CceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecC-CC-
Q 005325 81 GIYP---------PQVKVYELRQLSL-KFERHLD-SEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIP-RM- 146 (702)
Q Consensus 81 Gs~d---------g~I~vwdl~~~~~-~~~~h~~-~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~-~~- 146 (702)
++.+ +.|.+||+.+... .+..... ...+....+||||+.|++++. +.|.+|+..+ ....+... ..
T Consensus 78 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~ 156 (723)
T 1xfd_A 78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG 156 (723)
T ss_dssp EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT
T ss_pred EecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC
Confidence 6543 7889999987443 2222111 111445678999999999986 7899999874 33332221 11
Q ss_pred ------------------ccceEEecCCCcEEEEecCC----------------------------------CEEEEECC
Q 005325 147 ------------------GRDMAYNSWSCDLLCAASSP----------------------------------ELYRINLE 174 (702)
Q Consensus 147 ------------------~~~l~~~~~s~~llv~s~d~----------------------------------~V~vwdl~ 174 (702)
...+.+.|.+..|++++.++ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 13577888877787776542 69999999
Q ss_pred CCeEEEEeecC------CCCeEEEEEcCCCCEEEEEEc----CCeEEEEECCCCcceeEEecccCCCCCCCCe----EEE
Q 005325 175 QGRFLSSLNTQ------SPALNVVSRSKLHGLIACGGE----DGAVECFDMRMRSSAARINAVAPAGDADQEV----TAL 240 (702)
Q Consensus 175 ~g~~~~~l~~h------~~~V~~l~~sp~~~llasgs~----DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V----tsl 240 (702)
+++....+..+ ...+.+++|+|++++|++.+. +..|.+||+.++++...+..+. ...+ .++
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-----~~~~~~~~~~~ 311 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-----EAWLHRQNEEP 311 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-----SSCCCCCCCCC
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-----CCEEeccCCCc
Confidence 98865566554 557899999999998877754 3579999999988766654431 2333 378
Q ss_pred EEcCCCCCEEEE--EeCCC------eEEEEE-cCCCe---EEEEeeccCCCCeEE-EEEeeccCCCCCeEEEeC-C--CE
Q 005325 241 EFDSNGGFLMGV--GSSTG------KVLIYD-LRSSY---PIRVKDHMFDSPIVD-IKWHQSINTERPKLITTD-N--HI 304 (702)
Q Consensus 241 afspd~g~~Las--Gs~DG------~V~lwD-lrs~~---~l~~~~h~~~~~I~s-l~fsp~~~~~~~ll~ss~-D--g~ 304 (702)
+|+|+ |..|+. +..++ .|.+|| ...+. ...+..+ ...+.. ++|+| ++..+++++. + +.
T Consensus 312 ~~spd-g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~sp---dg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 312 VFSKD-GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDE---KGNKIYFLSTEDLPRR 385 (723)
T ss_dssp EECTT-SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEET---TTTEEEEEESSSCTTC
T ss_pred eEcCC-CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcC---CCCEEEEEEcCCCCcc
Confidence 99999 886664 45677 577777 34444 3323322 234554 69998 4555555554 4 78
Q ss_pred EEEEeCCCC--ceeEEecC---CCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 305 VRIWDPETG--ESMTSIEP---TAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 305 V~IWd~~tg--~~l~~i~~---h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
++||++... .....+.. |...+..++|+|++..|++.+....
T Consensus 386 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 386 RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp CEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred eEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 999998742 23334443 5677899999999998887765443
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=3.3e-18 Score=179.58 Aligned_cols=261 Identities=8% Similarity=0.030 Sum_probs=191.9
Q ss_pred EEEEEecCCcEEEEEcCCceEEEeeecCCc--eEEEEEEcCCCCEEEE-EECCCeEEEEecCC-ceE-EEecCC------
Q 005325 77 LIVSGIYPPQVKVYELRQLSLKFERHLDSE--IINFEVLADDYSKLAF-LCADRSISLHAKYG-KHY-SLRIPR------ 145 (702)
Q Consensus 77 llatGs~dg~I~vwdl~~~~~~~~~h~~~~--vv~~~~ls~dg~~Las-~s~D~~I~iw~~~g-~~~-~~~i~~------ 145 (702)
++++++.++.|.+||+.+............ ....+.+++++..++. +..++.|.+|+... ... .+..+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 388999999999999988544322221220 1345568899987754 45578999999873 332 233333
Q ss_pred CccceEEecCCCcEEEEe------------cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 005325 146 MGRDMAYNSWSCDLLCAA------------SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECF 213 (702)
Q Consensus 146 ~~~~l~~~~~s~~llv~s------------~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iW 213 (702)
....+.+.+.+..++++. .++.|++||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 445788888877788876 568999999999998887765 3468889999999877777 6899999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-C-----------------------eEEEEEcCCCeE
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-G-----------------------KVLIYDLRSSYP 269 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G-----------------------~V~lwDlrs~~~ 269 (702)
|+.+++.+..+..+. ... .+.|+|+ +..|++.+.. + .|.+||+.+++.
T Consensus 160 d~~~~~~~~~~~~~~----~~~---~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 160 DPEAGTLVEDKPIQS----WEA---ETYAQPD-VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp ETTTTEEEEEECSTT----TTT---TTBCCCB-CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred ECCCCcEeeeeeccc----cCC---CceeCCC-ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 999998877776551 012 2378898 7766544332 2 478999999886
Q ss_pred EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEE
Q 005325 270 IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPS 349 (702)
Q Consensus 270 l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~ 349 (702)
..+....+...+.+++|+| ++..++.+ ++.|.+||+.+++.+..+.. ...+.+++|+|++..|++++.++.|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~s~----dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNP----AKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp EEEEEEECSSCEEEEEECT----TSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred eEeecCCCCCceeeEEECC----CCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEE
Confidence 5422222256788999998 55555555 79999999999999888876 567889999999999999999999999
Q ss_pred EEcCC
Q 005325 350 YFIPD 354 (702)
Q Consensus 350 ~~ip~ 354 (702)
|.+..
T Consensus 306 ~d~~~ 310 (337)
T 1pby_B 306 YDAET 310 (337)
T ss_dssp EETTT
T ss_pred EECcC
Confidence 98765
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=9.5e-19 Score=205.05 Aligned_cols=287 Identities=8% Similarity=0.021 Sum_probs=196.5
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCC-ceEEEEEEcCCCCEEEEEECC---------Ce
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDS-EIINFEVLADDYSKLAFLCAD---------RS 128 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~-~vv~~~~ls~dg~~Las~s~D---------~~ 128 (702)
+...+.+++|||||++ +++ +.++.|++||+.+... .+..|... ..+....+||||++|++++.+ +.
T Consensus 15 ~~~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 15 FKIHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp TCCCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred CcccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 4445788999999997 566 6899999999987432 33333210 024567799999999999875 77
Q ss_pred EEEEecCC-ceEEEecCCC----ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCe--------------
Q 005325 129 ISLHAKYG-KHYSLRIPRM----GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPAL-------------- 189 (702)
Q Consensus 129 I~iw~~~g-~~~~~~i~~~----~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V-------------- 189 (702)
|.+|++.+ ....+..... ...+.+.|.+..|+.++. +.|++||+.++........+...+
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 88999884 3322222222 235677777766777665 799999999988766555544333
Q ss_pred ----EEEEEcCCCCEEEEEEcCC----------------------------------eEEEEECCCCcceeEEecccCCC
Q 005325 190 ----NVVSRSKLHGLIACGGEDG----------------------------------AVECFDMRMRSSAARINAVAPAG 231 (702)
Q Consensus 190 ----~~l~~sp~~~llasgs~DG----------------------------------~V~iWD~~t~~~v~~l~~~~~~~ 231 (702)
.+++|+|+++.|++++.|+ .|.+||+.+++....+..+....
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 7899999999999988653 79999999887656665431111
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCCeEEEEeeccCCCCe----EEEEEeeccCCCCCeEEE-e-C
Q 005325 232 DADQEVTALEFDSNGGFLMGVGSST----GKVLIYDLRSSYPIRVKDHMFDSPI----VDIKWHQSINTERPKLIT-T-D 301 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~LasGs~D----G~V~lwDlrs~~~l~~~~h~~~~~I----~sl~fsp~~~~~~~ll~s-s-~ 301 (702)
.+...|.+++|+|| |.+|++.+.. ..|.+||+.++++..+....+...+ ..++|+| ++..+++. + .
T Consensus 252 ~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~ 327 (723)
T 1xfd_A 252 MREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK---DGRKFFFIRAIP 327 (723)
T ss_dssp GSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT---TSCSEEEEEEEC
T ss_pred CccceeEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC---CCCeEEEEEecc
Confidence 22467999999999 9888776543 5799999999887654221112333 3789998 55556654 3 4
Q ss_pred CC------EEEEEe-CCCCc--eeEEecCCCCceeE-EEEEcCCCEEEEEeCC---CcEEEEEcCC
Q 005325 302 NH------IVRIWD-PETGE--SMTSIEPTAGKIND-VCVFKDSGLLLLALDC---SQIPSYFIPD 354 (702)
Q Consensus 302 Dg------~V~IWd-~~tg~--~l~~i~~h~~~I~~-v~~~p~~~~l~~a~~d---~~I~~~~ip~ 354 (702)
++ .|.+|| ..++. +...+..+...+.. ++|+|++..|+..+.+ +.+.+|.+..
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 66 577777 34444 14455543445554 6999999988766554 7888998764
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=2.6e-18 Score=210.57 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=206.8
Q ss_pred ccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 59 LWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
..|...+.++.|+++ .++++++.++.+.||.+.. ....+..|. . +....++|||..|+++. ++.|.+|+..
T Consensus 200 ~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~--~~~~~~SpDG~~la~~~-~~~i~~~d~~ 273 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D--YYPRHLNTDGRRILFSK-GGSIYIFNPD 273 (1045)
T ss_dssp ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S--SCEEEEEESSSCEEEEE-TTEEEEECTT
T ss_pred cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-C--cceeeEcCCCCEEEEEe-CCEEEEecCC
Confidence 467889999999998 5577888889999997653 222333332 2 23447889999998874 8999999985
Q ss_pred CceEEEecCC--------------CccceEEe-cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCC
Q 005325 136 GKHYSLRIPR--------------MGRDMAYN-SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHG 199 (702)
Q Consensus 136 g~~~~~~i~~--------------~~~~l~~~-~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~ 199 (702)
+.... .+.. ....+.+. +.+..+++++ ++.|++|++..+.... +..|.. .+.+++|+ ++.
T Consensus 274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEE
T ss_pred ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCC
Confidence 43332 3332 23477787 7666676666 7899999999887554 666777 89999999 999
Q ss_pred EEEEEEcCCeEE-EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-eccC
Q 005325 200 LIACGGEDGAVE-CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK-DHMF 277 (702)
Q Consensus 200 llasgs~DG~V~-iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~-~h~~ 277 (702)
.|++++.++.|. +||+.++... .+..+ ...+.+++|+|+ |.+|++++.++.|++||+.+++...+. .|
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~~~------~~~~~~~~~SpD-G~~la~~~~~~~v~~~d~~tg~~~~~~~~~-- 419 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAE-KFEEN------LGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSR-- 419 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEE-ECCCC------CCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECS--
T ss_pred eEEEEECCCceEEEEECCCCCce-EecCC------ccceeeeEECCC-CCEEEEECCCCeEEEEECCCCceEEeccCC--
Confidence 999999888898 9999876543 33333 578999999999 999999999999999999998877654 55
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCC----------CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDN----------HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~D----------g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
..+|.+++|+| ++..+++++.+ +.|++||+.+++ +..+..|...+.+++|+|++..|++++.+...
T Consensus 420 ~~~v~~~~~Sp---DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 420 EAMITDFTISD---NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp SSCCCCEEECT---TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred CCCccceEECC---CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCC
Confidence 67889999998 44445555543 499999999887 67788888889999999999999999887665
Q ss_pred EEEE
Q 005325 348 PSYF 351 (702)
Q Consensus 348 ~~~~ 351 (702)
..|.
T Consensus 496 ~~~~ 499 (1045)
T 1k32_A 496 PSPD 499 (1045)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 5554
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=6.6e-18 Score=197.54 Aligned_cols=276 Identities=8% Similarity=0.064 Sum_probs=194.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEE-EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-----
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLK-FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG----- 136 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~-~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g----- 136 (702)
..+++++|||| .+++++ .++.|.+||+.+.... +..+ .. .+..+.+||||+.|+++ .++.|.+|+..+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~~~-~~-~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLFDT-NE-ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEECC-TT-CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEccCC-cc-cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 56899999999 774555 3599999999885442 2333 22 24456689999999985 689999999865
Q ss_pred c-eEEEecCCC----------------ccceEEecCCCcEEEEe---------------------------------cCC
Q 005325 137 K-HYSLRIPRM----------------GRDMAYNSWSCDLLCAA---------------------------------SSP 166 (702)
Q Consensus 137 ~-~~~~~i~~~----------------~~~l~~~~~s~~llv~s---------------------------------~d~ 166 (702)
. ...+..... ...+.+.|.+..|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 3 222211111 25778888888888776 335
Q ss_pred CEEEEECCCCeEEEEee--cCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCcceeEEecccCCCCCCCCeEE
Q 005325 167 ELYRINLEQGRFLSSLN--TQSPALNVVSRSKLHGLIACGGEDG-----AVECFDMRMRSSAARINAVAPAGDADQEVTA 239 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts 239 (702)
.|++||+.+++...... .|...+.+++|+|+++.|++++.++ .|.+||+.+++.+..+..... ......+.+
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~~~~~ 314 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVEPLHP 314 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCCCCSC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeECccCC
Confidence 69999999998755442 4666799999999999999988776 999999999844444332200 000123578
Q ss_pred EEEcC--CCCCEEEEEeCCCeEEEEEcC-CCeEEE-EeeccCCCCeEE-EEEeeccCCCCCeEEEeC-CC----EEEEEe
Q 005325 240 LEFDS--NGGFLMGVGSSTGKVLIYDLR-SSYPIR-VKDHMFDSPIVD-IKWHQSINTERPKLITTD-NH----IVRIWD 309 (702)
Q Consensus 240 lafsp--d~g~~LasGs~DG~V~lwDlr-s~~~l~-~~~h~~~~~I~s-l~fsp~~~~~~~ll~ss~-Dg----~V~IWd 309 (702)
++|+| + |.+|++++.+|.+.||++. .+..+. +..+ ...|.+ ++|+| ++..+++++. ++ .|.+||
T Consensus 315 ~~~sp~~d-g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~sp---dg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 315 LTFLPGSN-NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDP---KGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CEECTTCS-SEEEEEECTTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECT---TSSEEEEEESSSCTTCBEEEEEE
T ss_pred ceeecCCC-CEEEEEEccCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcC---CCCEEEEEecCCCCceEEEEEEE
Confidence 99999 9 8899999999999999886 444444 4444 456776 79998 4555656553 43 788888
Q ss_pred CCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC----CcEEEEEcC
Q 005325 310 PETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC----SQIPSYFIP 353 (702)
Q Consensus 310 ~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d----~~I~~~~ip 353 (702)
+.++. +..+. |...+.+++|+|++..|++++.+ +.|.+|.+.
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 88776 44554 57789999999999988776544 347777654
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=4.6e-18 Score=208.36 Aligned_cols=223 Identities=14% Similarity=0.093 Sum_probs=166.7
Q ss_pred EcCCCCEEEEEECCCeEEEEecC--C-ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-----
Q 005325 113 LADDYSKLAFLCADRSISLHAKY--G-KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----- 184 (702)
Q Consensus 113 ls~dg~~Las~s~D~~I~iw~~~--g-~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----- 184 (702)
++++ ..+++++.|+.+.||... + ....+........+.+.+.+..++++ .++.|++||+...... .+..
T Consensus 211 ~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~ 287 (1045)
T 1k32_A 211 IVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES 287 (1045)
T ss_dssp EETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB
T ss_pred EeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccc
Confidence 4455 444566677888888643 3 22222222222356677666666665 6889999999555443 5544
Q ss_pred ------CCCCeEEEEEc-CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCC-CeEEEEEcCCCCCEEEEEeCC
Q 005325 185 ------QSPALNVVSRS-KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQ-EVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 185 ------h~~~V~~l~~s-p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~-~Vtslafspd~g~~LasGs~D 256 (702)
|...+.+++|+ |++..|++++ ++.|.+|++.++.... +..+ .. .+.+++|+ + |..|++++.+
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~------~~~~~~~~~~s-d-g~~l~~~s~~ 357 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEP------LRIRYVRRGGD-T-KVAFIHGTRE 357 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCC------SCEEEEEECSS-S-EEEEEEEETT
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCC------CcceEEeeeEc-C-CCeEEEEECC
Confidence 33468999999 9999888887 7899999998776433 3333 35 79999999 8 9999999888
Q ss_pred CeEE-EEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 257 GKVL-IYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 257 G~V~-lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
+.|. +||+.++.+..+..| ...+..++|+| ++..+++++.++.|++||+.+++....+..|...|.+++|+|++
T Consensus 358 ~~l~~~~d~~~~~~~~l~~~--~~~~~~~~~Sp---DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFEEN--LGNVFAMGVDR---NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS 432 (1045)
T ss_dssp EEEEEEEETTTCCEEECCCC--CCSEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred CceEEEEECCCCCceEecCC--ccceeeeEECC---CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence 8899 999998876665555 57899999998 45556666789999999999999888887889999999999999
Q ss_pred CEEEEEeCCC----------cEEEEEcC
Q 005325 336 GLLLLALDCS----------QIPSYFIP 353 (702)
Q Consensus 336 ~~l~~a~~d~----------~I~~~~ip 353 (702)
.+|++++.++ .|.+|.+.
T Consensus 433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 433 RFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CeEEEEecCccccccCCCCCeEEEEECC
Confidence 9888887644 78888764
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=4.5e-17 Score=171.98 Aligned_cols=277 Identities=12% Similarity=0.116 Sum_probs=184.4
Q ss_pred cCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCC--ceeEEEECCCCCEEEEEE
Q 005325 4 RGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFET--ATTKIRETPDGEFLIVSG 81 (702)
Q Consensus 4 ~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~--~v~~i~~SpDG~~llatG 81 (702)
.++..+++..+.++.|.+|++..+ + +++.+..+. .+..++|+|||+++++++
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~-~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD-T-------------------------VYKSCVMPDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT-E-------------------------EEEEEECSSCCSSCEEEECTTSSEEEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC-c-------------------------EEEEEecCCCCCCceeEECCCCCEEEEEe
Confidence 344545666778889999999887 2 222233334 578899999999877888
Q ss_pred ecCCcEEEEEcCCceEEEeeecC------CceEEEEEEcCCCCEEEEEECC------------CeEEEEecCC-c----e
Q 005325 82 IYPPQVKVYELRQLSLKFERHLD------SEIINFEVLADDYSKLAFLCAD------------RSISLHAKYG-K----H 138 (702)
Q Consensus 82 s~dg~I~vwdl~~~~~~~~~h~~------~~vv~~~~ls~dg~~Las~s~D------------~~I~iw~~~g-~----~ 138 (702)
..++.|.+||+.+.......... ...+..+.++||+++|++++.+ +.|.+|+... . .
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 88999999999875443222211 1113455689999999988865 8999999763 1 1
Q ss_pred EEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC------------------------CeEEEEE
Q 005325 139 YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP------------------------ALNVVSR 194 (702)
Q Consensus 139 ~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~------------------------~V~~l~~ 194 (702)
.....+....++.+.+.+. ++++ ++.|++||+.+++.+..+..+.. ...++++
T Consensus 142 ~~~~~~~~~~~~~~s~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 142 RTFPMPRQVYLMRAADDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp EEEECCSSCCCEEECTTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred eeccCCCcccceeECCCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 2233444555778888877 7775 44599999999998877754420 2345666
Q ss_pred cCCCCEEEEEE-cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 195 SKLHGLIACGG-EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS-NGGFLMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 195 sp~~~llasgs-~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
++++....... ....+..+|..+++. ..+... .+...+.+++|+| + +.+|+++ ++.|.+||+.+++.+..
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKT-HTQEFA----DLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCE-EEEEEE----ECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred cCCCcCCccccccceeEEEEeccCCcE-Eecccc----cCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEE
Confidence 65431110000 011122244444331 111111 0146789999999 8 9998888 89999999999988775
Q ss_pred eeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC
Q 005325 273 KDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 273 ~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h 322 (702)
... +..+.+++|+| ++..+++++.++.|.|||+.+++.+..+..+
T Consensus 291 ~~~--~~~~~~~~~s~---dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 291 ANL--DHTYYCVAFDK---KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEC--SSCCCEEEECS---SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EcC--CCCccceEECC---CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 544 34578999998 5566777777899999999999998888663
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=7.5e-18 Score=192.87 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=186.8
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEEC---CCeEEEE--ec-
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCA---DRSISLH--AK- 134 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~---D~~I~iw--~~- 134 (702)
...|.+++|||||++|+.++..++++.||++..... .+..+ ....+....++|| ..+++++. +....+| +.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~-~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNRE-PINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSS-CCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecc-cccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 456999999999999444444499999999866433 33333 2223556667888 66666665 4545554 55
Q ss_pred -CCceEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC----C
Q 005325 135 -YGKHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED----G 208 (702)
Q Consensus 135 -~g~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D----G 208 (702)
.+....+..........+.+.... +++.+..+.+.+||+.+++.......+. .+++|+|+|++|++++.+ +
T Consensus 99 ~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 99 RPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp STTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence 444443322333335566666655 5566667778899999998765544333 789999999999988887 7
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeeccCCCCeEEEE-
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG--KVLIYDLRSSYPIRVKDHMFDSPIVDIK- 285 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG--~V~lwDlrs~~~l~~~~h~~~~~I~sl~- 285 (702)
.|.+||+.+++.. .+..+ ...+.+++|+|| |..|+++..+| .|.+||+.++++..+..| ...|..++
T Consensus 176 ~i~~~d~~~g~~~-~l~~~------~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~ 245 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSG------EGSFSSASISPG-MKVTAGLETAREARLVTVDPRDGSVEDLELP--SKDFSSYRP 245 (582)
T ss_dssp EEEEEETTTCCCE-EECCS------SCEEEEEEECTT-SCEEEEEECSSCEEEEEECTTTCCEEECCCS--CSHHHHHCC
T ss_pred EEEEEcCCCCCce-EeecC------CCccccceECCC-CCEEEEccCCCeeEEEEEcCCCCcEEEccCC--CcChhhhhh
Confidence 8999999987754 55554 578899999999 99999888898 899999999887743444 44566666
Q ss_pred -------EeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcE
Q 005325 286 -------WHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQI 347 (702)
Q Consensus 286 -------fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I 347 (702)
|+| ++ .+++++ .++.++||++ |+.+. .+.+.|.+++|+ ++.++++++.+..-
T Consensus 246 ~~~~~~~~sp---dg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 246 TAITWLGYLP---DG-RLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp SEEEEEEECT---TS-CEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ccccceeEcC---CC-cEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence 998 44 666554 7999999999 76554 235688999999 88888887766553
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=2.5e-17 Score=192.64 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=194.4
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
||| .. +.++.++.|.||++.++ + +.+...++..+.+++|||||++ ||++
T Consensus 90 spd-~~--~~~~~~~~i~~~d~~~~-~-------------------------~~~l~~~~~~~~~~~~SpdG~~-la~~- 138 (706)
T 2z3z_A 90 AGR-GL--VVLFTQGGLVGFDMLAR-K-------------------------VTYLFDTNEETASLDFSPVGDR-VAYV- 138 (706)
T ss_dssp TTT-TE--EEEEETTEEEEEETTTT-E-------------------------EEEEECCTTCCTTCEECTTSSE-EEEE-
T ss_pred CCC-Ce--EEEEECCEEEEEECCCC-c-------------------------eEEccCCcccccCCcCCCCCCE-EEEE-
Confidence 677 42 44456788999999877 1 1112234566788999999999 5553
Q ss_pred cCCcEEEEEcCC-----ceEEE-eeecCCce-------------EEEEEEcCCCCEEEEEE-------------------
Q 005325 83 YPPQVKVYELRQ-----LSLKF-ERHLDSEI-------------INFEVLADDYSKLAFLC------------------- 124 (702)
Q Consensus 83 ~dg~I~vwdl~~-----~~~~~-~~h~~~~v-------------v~~~~ls~dg~~Las~s------------------- 124 (702)
.++.|.+|++.+ ..... .......+ +..+.+||||++|++++
T Consensus 139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~ 218 (706)
T 2z3z_A 139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA 218 (706)
T ss_dssp ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 679999999976 43321 11111112 35677999999999998
Q ss_pred --------------CCCeEEEEecCCceE-EEecC-C---CccceEEecCCCcEEEEecCC-----CEEEEECCCCeEEE
Q 005325 125 --------------ADRSISLHAKYGKHY-SLRIP-R---MGRDMAYNSWSCDLLCAASSP-----ELYRINLEQGRFLS 180 (702)
Q Consensus 125 --------------~D~~I~iw~~~g~~~-~~~i~-~---~~~~l~~~~~s~~llv~s~d~-----~V~vwdl~~g~~~~ 180 (702)
.+..|.+|++.+... .+... . ....+.+.+.+..+++++.+. .|++||+.+++...
T Consensus 219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence 446799999885433 22221 1 123677777777788877665 79999999994333
Q ss_pred Eee-c-CCC---CeEEEEEcC--CCCEEEEEEcCCeEEEEECC-CCcceeEEecccCCCCCCCCeEE-EEEcCCCCCEEE
Q 005325 181 SLN-T-QSP---ALNVVSRSK--LHGLIACGGEDGAVECFDMR-MRSSAARINAVAPAGDADQEVTA-LEFDSNGGFLMG 251 (702)
Q Consensus 181 ~l~-~-h~~---~V~~l~~sp--~~~llasgs~DG~V~iWD~~-t~~~v~~l~~~~~~~~~~~~Vts-lafspd~g~~La 251 (702)
.+. . +.. .+.+++|+| ++.+|++++.||.+.||++. ++..+..+..+ ...|.+ ++|+|+ |..|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~------~~~v~~~~~~spd-g~~l~ 371 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG------EWEVTNFAGFDPK-GTRLY 371 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS------SSCEEEEEEECTT-SSEEE
T ss_pred EEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC------CeEEEeeeEEcCC-CCEEE
Confidence 332 2 222 246789999 99999999999999999886 56666666555 466776 899999 87776
Q ss_pred EEeC-CC----eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-C---CEEEEEeCCCCceeEEecCC
Q 005325 252 VGSS-TG----KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD-N---HIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 252 sGs~-DG----~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-D---g~V~IWd~~tg~~l~~i~~h 322 (702)
+++. ++ .|..||+.++....+ .| ...+.+++|+| ++..+++++. + +.|.+||+.+++ ...+..
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~~~~l-~~--~~~~~~~~~sp---dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~- 443 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGKTKDL-TP--ESGMHRTQLSP---DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEA- 443 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCCCEES-CC--SSSEEEEEECT---TSSEEEEEEECSSCSCEEEEEESSSCE-EEEEEC-
T ss_pred EEecCCCCceEEEEEEEcCCCCceec-cC--CCceEEEEECC---CCCEEEEEecCCCCCcEEEEEECCCCe-Eeeccc-
Confidence 5544 44 677778877764333 34 45789999998 4455555543 2 579999999887 433333
Q ss_pred CCceeEEEEEcCCCEEEEEeCCC--cEEEEE
Q 005325 323 AGKINDVCVFKDSGLLLLALDCS--QIPSYF 351 (702)
Q Consensus 323 ~~~I~~v~~~p~~~~l~~a~~d~--~I~~~~ 351 (702)
...+..+.+.+. ..+.....++ .+..+.
T Consensus 444 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 444 KNPDTGYAMPEI-RTGTIMAADGQTPLYYKL 473 (706)
T ss_dssp C------CCCCE-EEEEEECTTSSSEEEEEE
T ss_pred cchhhhcCCCCc-EEEEEEcCCCCEEEEEEE
Confidence 334444333222 2233333343 555543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=1.6e-16 Score=168.81 Aligned_cols=252 Identities=7% Similarity=0.010 Sum_probs=167.0
Q ss_pred CCCceeEEEECCCCCEEEEEEec--CCcEEEEEcCCceEEE----eeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005325 61 FETATTKIRETPDGEFLIVSGIY--PPQVKVYELRQLSLKF----ERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHA 133 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~--dg~I~vwdl~~~~~~~----~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~ 133 (702)
....+..++|+|||+ |++++.. ++.|.+|++....... ..+... ...+.+++|+++|++++ .++.|.+|+
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~--p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP--PAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC--CSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC--CEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 345667899999999 5666654 6899999997643322 223222 44566889999888887 678898887
Q ss_pred cC--CceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 134 KY--GKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 134 ~~--g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
+. +....+. .+... +.-.. ...+...+.+++|+|++++++++..++.|.
T Consensus 115 ~~~~g~~~~~~---------------------------~~~~~-~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 115 IAADGALTLTD---------------------------TVQHS-GHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp ECTTSCEEEEE---------------------------EEECC-CCCSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred eCCCCCeeecc---------------------------eeecC-CCCCC-ccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 64 1111110 00000 00000 011234588999999999777777789999
Q ss_pred EEECC-CCccee--EEecccCCCCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCC--CeEEE---EeeccCC----
Q 005325 212 CFDMR-MRSSAA--RINAVAPAGDADQEVTALEFDSNGGFLMGV-GSSTGKVLIYDLRS--SYPIR---VKDHMFD---- 278 (702)
Q Consensus 212 iWD~~-t~~~v~--~l~~~~~~~~~~~~Vtslafspd~g~~Las-Gs~DG~V~lwDlrs--~~~l~---~~~h~~~---- 278 (702)
+||+. ++.... .+... ....+..++|+|+ |.+|++ +..++.|.+|++.. ++... +.....+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~-----~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTME-----AGFGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEECTTSCEEEEEEEECC-----TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred EEEECCCCcEEEeeeEEcC-----CCCCCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 99998 444322 22222 1346789999999 886655 56789999999884 54322 2222111
Q ss_pred CCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC---CceeEEecCCCCceeEEEEEcCCCEEEEEeCC-CcEEEEEcC
Q 005325 279 SPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET---GESMTSIEPTAGKINDVCVFKDSGLLLLALDC-SQIPSYFIP 353 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t---g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d-~~I~~~~ip 353 (702)
..+..++|+| ++..+++++ .++.|.+|++.. ...+..+..+...+.+++|+|++.+|++++.+ +.|.+|.+.
T Consensus 240 ~~~~~i~~sp---dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 240 NGAAAIRLSH---DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEECT---TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceeEEECC---CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3488999998 444454554 589999999972 35566677766778999999999988888765 789999774
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4.6e-16 Score=166.39 Aligned_cols=259 Identities=11% Similarity=0.074 Sum_probs=167.1
Q ss_pred CCCceeEEEECCCCCEEEEEEecC----CcEEEEEcCC--ceEEEe--ee-cCCceEEEEEEcCCCCEEEEEE-CCCeEE
Q 005325 61 FETATTKIRETPDGEFLIVSGIYP----PQVKVYELRQ--LSLKFE--RH-LDSEIINFEVLADDYSKLAFLC-ADRSIS 130 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~d----g~I~vwdl~~--~~~~~~--~h-~~~~vv~~~~ls~dg~~Las~s-~D~~I~ 130 (702)
....+..++|+|||++ |++++.+ +.|.+|++.. ..+... .. ....+..+. + ++..|++++ .++.|.
T Consensus 48 ~~~~p~~l~~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~-~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT-T--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE-E--CSSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE-E--CCCEEEEEECCCCEEE
Confidence 4556778999999999 4555553 7999998865 233221 11 122333333 3 778887776 588999
Q ss_pred EEecC--CceE----EEecCCC-----------ccceEEecCCCcEEEEec-CCCEEEEECCCCe-------EE-----E
Q 005325 131 LHAKY--GKHY----SLRIPRM-----------GRDMAYNSWSCDLLCAAS-SPELYRINLEQGR-------FL-----S 180 (702)
Q Consensus 131 iw~~~--g~~~----~~~i~~~-----------~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~-------~~-----~ 180 (702)
+|++. +... ....... ..++.+.+....+++++. ++.|.+|++.... +. .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99875 2111 1111111 135788887777777665 6779999876433 21 1
Q ss_pred E-eecCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 181 S-LNTQSPALNVVSRSKLHGLIACGG-EDGAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 181 ~-l~~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
. ...+...+.+++|+|++++|++++ .++.|.+||+.++.. +..+... ..+...+.+++|+|+ |.+|+++..+
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~---~~~~~~~~~i~~spd-g~~l~v~~~~ 279 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD---TVNAQGSGDIHLSPD-GKYLYASNRL 279 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC---SSCCCCEEEEEECTT-SSEEEEEECS
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC---CCCCCCcccEEECCC-CCEEEEECCC
Confidence 1 223345688999999999877777 589999999987653 2333222 122355789999999 9988776654
Q ss_pred --CeEEEEEcC--CCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEE--eCCCCceeEEec-CCCCce
Q 005325 257 --GKVLIYDLR--SSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIW--DPETGESMTSIE-PTAGKI 326 (702)
Q Consensus 257 --G~V~lwDlr--s~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IW--d~~tg~~l~~i~-~h~~~I 326 (702)
+.|.||++. ++.... .... +..+.+++|+| ++..+++++ .++.|.|| |..+|++..... .+...+
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~sp---dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITP---NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECT---TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECC---CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 899999996 445322 2222 45678999998 444566666 68999996 555777654331 234467
Q ss_pred eEEEEE
Q 005325 327 NDVCVF 332 (702)
Q Consensus 327 ~~v~~~ 332 (702)
.||+|.
T Consensus 355 ~~v~~~ 360 (361)
T 3scy_A 355 VCLKFV 360 (361)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 888875
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=2.8e-17 Score=181.79 Aligned_cols=247 Identities=11% Similarity=0.067 Sum_probs=162.0
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-----------E-----EeeecCCceEEEEEEcCCCCEEE----E
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-----------K-----FERHLDSEIINFEVLADDYSKLA----F 122 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-----------~-----~~~h~~~~vv~~~~ls~dg~~La----s 122 (702)
..++++++++++.+ +++|+.++ |+||+...... . ...+. ...+..+.+++++.+|+ +
T Consensus 37 ~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM-KFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC-SSCEEEEEECTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC-CCcccEEEEcCCCCEEEEEEec
Confidence 35899999999999 67777777 89987643110 0 00011 11255666778888887 5
Q ss_pred EECCCeEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEEC-CCCeEEEEeecCCCCeEEEEEcCC-CCE
Q 005325 123 LCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINL-EQGRFLSSLNTQSPALNVVSRSKL-HGL 200 (702)
Q Consensus 123 ~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl-~~g~~~~~l~~h~~~V~~l~~sp~-~~l 200 (702)
++.|++|+||++..... .. +.. ..-..+..+.+|...|++|+|+|+ +.+
T Consensus 114 gs~d~~v~iwd~~~~~~-----~~------------------------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSN-----EA------------------------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp TTTEEEEEEEEHHHHHC-----TT------------------------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred cCCCceEEEEEcccccc-----CC------------------------cCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence 66778888876541100 00 000 000123456678899999999998 799
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eeecc---
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHM--- 276 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~--- 276 (702)
|++|+.||+|++||++++..+.....| ...|++++|+|+ |.+|++|+.||.|++||++ +.... +..|.
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~------~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPS------TVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECG------GGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCC------CCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 999999999999999988666555555 589999999999 9999999999999999999 44443 33331
Q ss_pred --CCCCeEEEEEeeccCCCCCeEEEe--CC------CEEEEEeCCCCc-----eeEEecC-------CCCceeEEEEEcC
Q 005325 277 --FDSPIVDIKWHQSINTERPKLITT--DN------HIVRIWDPETGE-----SMTSIEP-------TAGKINDVCVFKD 334 (702)
Q Consensus 277 --~~~~I~sl~fsp~~~~~~~ll~ss--~D------g~V~IWd~~tg~-----~l~~i~~-------h~~~I~~v~~~p~ 334 (702)
+...|.+++|++ ...++++. .+ ..+++|++...+ .+..+.. ...+...+.+.++
T Consensus 237 ~~~~~~v~~v~w~~----~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~d 312 (434)
T 2oit_A 237 SDHPVRVLDVLWIG----TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEE 312 (434)
T ss_dssp TTSCEEEEEEEEEE----TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGG
T ss_pred CCCceeEEEEEEec----CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhcc
Confidence 123799999997 45555432 33 249999998542 2222211 1112233445577
Q ss_pred CCEEEEEeC-CCcEEEEEcC
Q 005325 335 SGLLLLALD-CSQIPSYFIP 353 (702)
Q Consensus 335 ~~~l~~a~~-d~~I~~~~ip 353 (702)
-.++++++. ...|.++...
T Consensus 313 w~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 313 WDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp GTEEEEEETTCSBCEEEEEC
T ss_pred CCEEEEecCCCCceeEEEec
Confidence 787777765 4446666543
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=193.27 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=197.5
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEe
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGI 82 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs 82 (702)
|+||. ++..+.+++|++|++.++ ...+.. .... . -...+.+++|||||++ ||+++
T Consensus 24 s~dg~--~~~~~~d~~i~~~~~~~g-~~~~~~-~~~~-~-------------------~~~~~~~~~~SpDg~~-la~~~ 78 (719)
T 1z68_A 24 ISGQE--YLHQSADNNIVLYNIETG-QSYTIL-SNRT-M-------------------KSVNASNYGLSPDRQF-VYLES 78 (719)
T ss_dssp SSSSE--EEEECTTSCEEEEESSSC-CEEEEE-CHHH-H-------------------HTTTCSEEEECTTSSE-EEEEE
T ss_pred CCCCe--EEEEcCCCCEEEEEcCCC-cEEEEE-cccc-c-------------------cccceeeEEECCCCCe-EEEEe
Confidence 67884 465667889999999988 321111 0000 0 0123789999999999 55554
Q ss_pred c---------CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecCCC------
Q 005325 83 Y---------PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIPRM------ 146 (702)
Q Consensus 83 ~---------dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~~~------ 146 (702)
. ++.|++||+.+........... .+....+||||+.|+++. ++.|.+|+..+ ....+.....
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~-~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~ 156 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGNELPR-PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN 156 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSSCCCS-SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE
T ss_pred cCceeEEeecceEEEEEECCCCccccceecCc-ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc
Confidence 4 6899999998754310011111 255677999999999986 78999999863 3322211111
Q ss_pred --------------ccceEEecCCCcEEEEecCC----------------------------------CEEEEECCCCeE
Q 005325 147 --------------GRDMAYNSWSCDLLCAASSP----------------------------------ELYRINLEQGRF 178 (702)
Q Consensus 147 --------------~~~l~~~~~s~~llv~s~d~----------------------------------~V~vwdl~~g~~ 178 (702)
...+.+.|.+..|++++.+. .|++||+.+++.
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 13688888888888776542 688999998864
Q ss_pred E--------EEeecCCCCeEEEEEcCCCCEEEEEEcC----CeEEEEE----CCCCcceeEE----ecccCCCCCCCCeE
Q 005325 179 L--------SSLNTQSPALNVVSRSKLHGLIACGGED----GAVECFD----MRMRSSAARI----NAVAPAGDADQEVT 238 (702)
Q Consensus 179 ~--------~~l~~h~~~V~~l~~sp~~~llasgs~D----G~V~iWD----~~t~~~v~~l----~~~~~~~~~~~~Vt 238 (702)
. ..+..|...+.+++|+|++.++++.... ..|.+|| +.++++...+ ..+ ...|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~------~~~~~ 310 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR------TGWAG 310 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS------SSCSS
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC------CceEc
Confidence 2 1233577789999999998877775543 2488999 8777655444 233 34555
Q ss_pred -----EEEEcCCCCCEEEE--EeCCC--eEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCC-----CE
Q 005325 239 -----ALEFDSNGGFLMGV--GSSTG--KVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDN-----HI 304 (702)
Q Consensus 239 -----slafspd~g~~Las--Gs~DG--~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D-----g~ 304 (702)
+++|+|+ |..|+. +..+| .|.+||+.++....+..+ ...|..+.+++ ++.+++++.+ +.
T Consensus 311 ~~~~~~~~~spd-g~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~--~~~v~~~~~~d----~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 311 GFFVSTPVFSYD-AISYYKIFSDKDGYKHIHYIKDTVENAIQITSG--KWEAINIFRVT----QDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSSCCCCEECTT-SSCEEEEEECTTSCEEEEEESSCSTTCEECSCS--SSCEEEEEEEC----SSEEEEEESCGGGCTTC
T ss_pred cccCCccEECCC-CCeEEEEEEccCCceEEEEEECCCCceEecccC--ceEEEEEEEEe----CCEEEEEEecCCCCCce
Confidence 7899999 875544 44555 577778877765544444 44577777663 6677777654 78
Q ss_pred EEEEeCCC--Cc-eeEEecC----CCCceeEEEEEcCCCEEEEEeC
Q 005325 305 VRIWDPET--GE-SMTSIEP----TAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 305 V~IWd~~t--g~-~l~~i~~----h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
++||.+.. +. ....+.. |...+..+.|+|++..++..+.
T Consensus 384 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 384 RNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp BEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred EEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 88988764 42 1334432 5667888999998887775443
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=8e-17 Score=178.18 Aligned_cols=162 Identities=11% Similarity=0.125 Sum_probs=125.6
Q ss_pred CCCCeEEEEEcCCCCEEE----EEEcCCeEEEEECCCC--------cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEE
Q 005325 185 QSPALNVVSRSKLHGLIA----CGGEDGAVECFDMRMR--------SSAARINAVAPAGDADQEVTALEFDSNGGFLMGV 252 (702)
Q Consensus 185 h~~~V~~l~~sp~~~lla----sgs~DG~V~iWD~~t~--------~~v~~l~~~~~~~~~~~~Vtslafspd~g~~Las 252 (702)
+...|++++|+|++++|+ +|+.|++|+|||+.+. +.+..+... ..|...|++|+|+|+++.+|++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL---KDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC---CSGGGSEEEEEECSSCTTEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc---CCCCCceEEEEECCCCCCEEEE
Confidence 456799999999999999 7888999999998764 233333321 1237899999999975789999
Q ss_pred EeCCCeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC-------C
Q 005325 253 GSSTGKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTA-------G 324 (702)
Q Consensus 253 Gs~DG~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~-------~ 324 (702)
|+.||+|+|||++++..+. ...| ...|++++|+| ++..+++++.|+.|+|||++ ++....+..|. .
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~--~~~v~~v~wsp---dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPS--TVAVTSVCWSP---KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECG--GGCEEEEEECT---TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred EECCCeEEEEEcCCCcceeeccCC--CCceeEEEEcC---CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCce
Confidence 9999999999999986654 4556 67999999998 56677777789999999998 66666665442 3
Q ss_pred ceeEEEEEcCCCEEEEEe-CCC------cEEEEEcCCC
Q 005325 325 KINDVCVFKDSGLLLLAL-DCS------QIPSYFIPDL 355 (702)
Q Consensus 325 ~I~~v~~~p~~~~l~~a~-~d~------~I~~~~ip~l 355 (702)
.|.+++|+++..++++.+ .++ .+.+|.++..
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 899999999877665433 332 3778888764
No 155
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=5.5e-16 Score=158.55 Aligned_cols=210 Identities=11% Similarity=0.031 Sum_probs=150.6
Q ss_pred EEEecCCcEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEEecCCC
Q 005325 79 VSGIYPPQVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAYNSWSC 157 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~ 157 (702)
.+++.++.|.+||+.+... .+..|.. .+..+.++|++.+|++++ ++.|.+
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~-~~~i~~-------------------------- 66 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS-EGLLYR-------------------------- 66 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE-TTEEEE--------------------------
T ss_pred CCCCcceeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc-CCeEEE--------------------------
Confidence 3456788999999988444 3444522 255667888988887765 555555
Q ss_pred cEEEEecCCCEEEEECCC-CeEEEEeecC-CCCeEEEEEcCCCCEEEEEEc--CCeEEEEE--CCCCcceeEEecccCCC
Q 005325 158 DLLCAASSPELYRINLEQ-GRFLSSLNTQ-SPALNVVSRSKLHGLIACGGE--DGAVECFD--MRMRSSAARINAVAPAG 231 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~-g~~~~~l~~h-~~~V~~l~~sp~~~llasgs~--DG~V~iWD--~~t~~~v~~l~~~~~~~ 231 (702)
||+.+ ++....+..| ...|.+++|+|++.+|++++. ++.+.||. +.++. ...+..+
T Consensus 67 -------------~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---- 128 (297)
T 2ojh_A 67 -------------LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN---- 128 (297)
T ss_dssp -------------EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS----
T ss_pred -------------EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC----
Confidence 56655 5555444454 357889999999999999993 34555554 44443 4444444
Q ss_pred CCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcC--CCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEE
Q 005325 232 DADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLR--SSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRI 307 (702)
Q Consensus 232 ~~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlr--s~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~I 307 (702)
..+.+++|+|+ +.+|+ +++.++.+.||++. ++....+..+ ...+.+++|+| ++..+++++ .++.+.|
T Consensus 129 ---~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~s~---dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 129 ---LPSYWHGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG--EGRNDGPDYSP---DGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp ---SSEEEEEECTT-SSEEEEEEEETTEEEEEEEETTTCCEEECCCS--SSCEEEEEECT---TSSEEEEEECTTSSCEE
T ss_pred ---CCccceEECCC-CCEEEEEECCCCceEEEEEECCCCcceEcccC--CCccccceECC---CCCEEEEEecCCCCccE
Confidence 45999999999 88777 78889999999864 4555445555 56899999998 444456565 4889999
Q ss_pred EeCC-CCceeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 308 WDPE-TGESMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 308 Wd~~-tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
|++. .+..+..+..|...+.+++|+|++.+|++++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp EEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence 9986 566777888888899999999999988888765
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=1.8e-15 Score=159.69 Aligned_cols=274 Identities=8% Similarity=-0.006 Sum_probs=179.0
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEE--EeeecCCceEEEEEEcCCCCEEEE-EECCCeEEEEecCCceEE--E
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLK--FERHLDSEIINFEVLADDYSKLAF-LCADRSISLHAKYGKHYS--L 141 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~--~~~h~~~~vv~~~~ls~dg~~Las-~s~D~~I~iw~~~g~~~~--~ 141 (702)
.+++++++.+ +++++.++.|.+||+.+.... +..+.... ...+.+++++..++. ...++.|.+|+....... +
T Consensus 4 g~~~~~~~~~-~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEE-EEEEETTTEEEEEETTTTEEEEEEECSSCCS-SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEE-EEEeCCCCeEEEEECCCCcEEEEEecCCCCC-CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4567777776 889999999999999885442 22221112 334557889887654 456899999998743322 3
Q ss_pred ecCCC-------ccceEEecCCCcEEEEecC------------CCEEEEECCCCeE---EEEeecCCCCeEEEEEcCCCC
Q 005325 142 RIPRM-------GRDMAYNSWSCDLLCAASS------------PELYRINLEQGRF---LSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 142 ~i~~~-------~~~l~~~~~s~~llv~s~d------------~~V~vwdl~~g~~---~~~l~~h~~~V~~l~~sp~~~ 199 (702)
..+.. ...+.+.+.+..+++++.+ +.|++||+.+++. +..+.. ...+.+++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc
Confidence 33332 3578888888888888865 8999999988543 333333 34688999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCC--------------CCC----CCeEEEEEcCCCCCEEEEEe-CCCeEE
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAG--------------DAD----QEVTALEFDSNGGFLMGVGS-STGKVL 260 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~--------------~~~----~~Vtslafspd~g~~LasGs-~DG~V~ 260 (702)
+++++ +.|.+||+.+++.+..+....... ... ....+++++++ +....... ....+.
T Consensus 161 -l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 161 -LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD-DKQDPATADLLYGYL 236 (349)
T ss_dssp -EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEE
T ss_pred -EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC-CcCCccccccceeEE
Confidence 55544 449999999998877776441000 000 03455777765 32111100 111222
Q ss_pred EEEcCCCeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEE
Q 005325 261 IYDLRSSYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLL 338 (702)
Q Consensus 261 lwDlrs~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l 338 (702)
.+|+.+++... +..+ +..+.+++|+| .++.+++.+ ++.|.+||+.+++.+..+.. ...+.+++|+|++..|
T Consensus 237 ~~~~~~~~~~~~~~~~~--~~~~~~~~~sp---~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADL--TELYFTGLRSP---KDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEETTTCCEEEEEEEEC--SSCEEEEEECS---SCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCE
T ss_pred EEeccCCcEEecccccC--CCcceeeEecC---CCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEE
Confidence 35555544322 2223 56788999985 144455555 88999999999998888875 5567899999999988
Q ss_pred EEEeCCCcEEEEEcCC
Q 005325 339 LLALDCSQIPSYFIPD 354 (702)
Q Consensus 339 ~~a~~d~~I~~~~ip~ 354 (702)
++++.++.|.+|.+..
T Consensus 310 ~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEecCCCeEEEEeccc
Confidence 8888889999998654
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=9.5e-15 Score=156.16 Aligned_cols=264 Identities=13% Similarity=0.098 Sum_probs=171.8
Q ss_pred EEEEecC----CcEEEEEcCC--ceEEEeeecCCceEEEEEEcCCCCEEEEEECC----CeEEEEecC---CceEEE-ec
Q 005325 78 IVSGIYP----PQVKVYELRQ--LSLKFERHLDSEIINFEVLADDYSKLAFLCAD----RSISLHAKY---GKHYSL-RI 143 (702)
Q Consensus 78 latGs~d----g~I~vwdl~~--~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D----~~I~iw~~~---g~~~~~-~i 143 (702)
++.|+|. +.|.+|.+.. ..+.............+.++||+++|++++.+ +.|.+|++. |....+ ..
T Consensus 16 ~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~ 95 (361)
T 3scy_A 16 MLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ 95 (361)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe
Confidence 6777663 5799997743 22211111112224556789999999999886 799999765 332222 22
Q ss_pred CCCcc---ceEEecCCCcEEEEe-cCCCEEEEECCCCeEEEEe------ec--------CCCCeEEEEEcCCCCEEEEEE
Q 005325 144 PRMGR---DMAYNSWSCDLLCAA-SSPELYRINLEQGRFLSSL------NT--------QSPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 144 ~~~~~---~l~~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l------~~--------h~~~V~~l~~sp~~~llasgs 205 (702)
+..+. .+++ ....+++++ .++.|.+|++.....+..+ .+ +...+.+++|+|++++|++++
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 22222 3333 444466666 4678999999754322211 11 123468899999998665554
Q ss_pred -cCCeEEEEECCCCcc------e------eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCeEEE
Q 005325 206 -EDGAVECFDMRMRSS------A------ARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSYPIR 271 (702)
Q Consensus 206 -~DG~V~iWD~~t~~~------v------~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~~l~ 271 (702)
.++.|.+|++..... + ..+... ....+.+++|+|+ |.+|++++ .++.|.+||+.++....
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA-----PGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC-----TTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecC-----CCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceEE
Confidence 589999999875442 2 122222 1356889999999 98887776 68999999999876533
Q ss_pred E---eec-cCCCCeEEEEEeeccCCCCCeEEEeC--CCEEEEEeCC--CCc--eeEEecCCCCceeEEEEEcCCCEEEEE
Q 005325 272 V---KDH-MFDSPIVDIKWHQSINTERPKLITTD--NHIVRIWDPE--TGE--SMTSIEPTAGKINDVCVFKDSGLLLLA 341 (702)
Q Consensus 272 ~---~~h-~~~~~I~sl~fsp~~~~~~~ll~ss~--Dg~V~IWd~~--tg~--~l~~i~~h~~~I~~v~~~p~~~~l~~a 341 (702)
+ ... .....+..++|+| ++..++++.. ++.|.||++. +++ .+..+.. ...+.+++|+|++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~sp---dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSP---DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECT---TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred eEEEecCCCCCCCcccEEECC---CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence 2 111 1124568999998 4444545553 5899999996 455 4555555 5678899999999988888
Q ss_pred e-CCCcEEEEEcC
Q 005325 342 L-DCSQIPSYFIP 353 (702)
Q Consensus 342 ~-~d~~I~~~~ip 353 (702)
+ .++.|.+|.+.
T Consensus 324 ~~~~~~v~v~~~d 336 (361)
T 3scy_A 324 CRDTNVIQIFERD 336 (361)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEEE
Confidence 8 67888888664
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=9.9e-17 Score=188.10 Aligned_cols=283 Identities=8% Similarity=-0.017 Sum_probs=190.3
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEeeecCC--ceEEEEEEcCCCCEEEEEEC---------CCe
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFERHLDS--EIINFEVLADDYSKLAFLCA---------DRS 128 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~h~~~--~vv~~~~ls~dg~~Las~s~---------D~~ 128 (702)
+......++|+|||++ +++ +.++.|++||+.+... .+..+... ..+....+||||++|++++. ++.
T Consensus 14 ~~~~~~~~~~s~dg~~-~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 14 FSYKTFFPNWISGQEY-LHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp TCCCCCCCEESSSSEE-EEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccCCCCccEECCCCeE-EEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 3344557899999965 454 4699999999987433 22222111 01446678999999999887 789
Q ss_pred EEEEecCCceEE--EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe-ecCCCCe----------------
Q 005325 129 ISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL-NTQSPAL---------------- 189 (702)
Q Consensus 129 I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l-~~h~~~V---------------- 189 (702)
|.+|++.+.... ..+......+.+.|.+..|+.+. ++.|++||+.++...... .++...|
T Consensus 92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred EEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 999998854321 22344455788888888777764 789999999988765432 2222222
Q ss_pred -EEEEEcCCCCEEEEEEcCC----------------------------------eEEEEECCCCcce--eEEecccCCCC
Q 005325 190 -NVVSRSKLHGLIACGGEDG----------------------------------AVECFDMRMRSSA--ARINAVAPAGD 232 (702)
Q Consensus 190 -~~l~~sp~~~llasgs~DG----------------------------------~V~iWD~~t~~~v--~~l~~~~~~~~ 232 (702)
.+++|+|+++.|++++.|. .|.+||+.+++.+ ..+........
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 4899999999999988652 7889999987753 12211000012
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCCeEEEEe-----eccCCCCeE-----EEEEeeccCCCC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSST----GKVLIYD----LRSSYPIRVK-----DHMFDSPIV-----DIKWHQSINTER 294 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~D----G~V~lwD----lrs~~~l~~~-----~h~~~~~I~-----sl~fsp~~~~~~ 294 (702)
+...+.+++|+|| +.++++.... ..|.+|| +.++++..+. .| ...|. .+.|+| ++.
T Consensus 251 ~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~sp---dg~ 324 (719)
T 1z68_A 251 SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSY---DAI 324 (719)
T ss_dssp SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECT---TSS
T ss_pred CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECC---CCC
Confidence 3578999999999 8877775433 2488999 7777654432 33 44555 789998 455
Q ss_pred CeEE-Ee-CCC--EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCC-----CcEEEEEcCC
Q 005325 295 PKLI-TT-DNH--IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDC-----SQIPSYFIPD 354 (702)
Q Consensus 295 ~ll~-ss-~Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d-----~~I~~~~ip~ 354 (702)
.+++ ++ .++ .|.+||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+.+|.++.
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 4444 33 333 68888887776 45666656678888888 77766666554 7788888764
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=1.3e-15 Score=163.96 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=172.0
Q ss_pred EEECCCCCEEEEEEecCC--cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce-EE-Eec
Q 005325 68 IRETPDGEFLIVSGIYPP--QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH-YS-LRI 143 (702)
Q Consensus 68 i~~SpDG~~llatGs~dg--~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~-~~-~~i 143 (702)
.+|||||++|++++..++ .|.+||+.+.............+....++||+..|++++.++.|.+|++.+.. .. ...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999555544466 48888987754432222122122234589999999999999999999988432 22 222
Q ss_pred CCCcc-ceEEe-cCCCcEEEE-----------------------ecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcC-C
Q 005325 144 PRMGR-DMAYN-SWSCDLLCA-----------------------ASSPELYRINLEQGRFLSSLNTQSPALNVVSRSK-L 197 (702)
Q Consensus 144 ~~~~~-~l~~~-~~s~~llv~-----------------------s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp-~ 197 (702)
+.... ...+. .....++++ .....|++||+.+++... +..+...+..++|+| +
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCC
Confidence 32211 12221 222333332 123569999999997544 445666799999999 9
Q ss_pred CCEEEEEEcC------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCC
Q 005325 198 HGLIACGGED------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG----KVLIYDLRS 266 (702)
Q Consensus 198 ~~llasgs~D------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG----~V~lwDlrs 266 (702)
+..|+.++.+ ..|.+||+..+. +..+..+. ....+.+++|+|+ |..|+..+. ++ .|.+||+.+
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~----~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHA----EGESCTHEFWVPD-GSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCC----TTEEEEEEEECTT-SSCEEEEEEETTCCCEEEEEECTTT
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCC----CCcccccceECCC-CCEEEEEecCCCCCcceEEEEecCC
Confidence 9888887763 378888876544 33333330 0135888999999 887755433 22 399999999
Q ss_pred CeEEEEeeccC-C---CCeEEEEEeeccCCCCCeEEE---------eCCCEEEEEeCCCCceeEEecCCCC---------
Q 005325 267 SYPIRVKDHMF-D---SPIVDIKWHQSINTERPKLIT---------TDNHIVRIWDPETGESMTSIEPTAG--------- 324 (702)
Q Consensus 267 ~~~l~~~~h~~-~---~~I~sl~fsp~~~~~~~ll~s---------s~Dg~V~IWd~~tg~~l~~i~~h~~--------- 324 (702)
++...+..... . .....++|+| ++..++++ ..+..|.+||+.+++. ..+..|..
T Consensus 274 g~~~~l~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 349 (388)
T 3pe7_A 274 LENRQLTSMPACSHLMSNYDGSLMVG---DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDR 349 (388)
T ss_dssp CCEEEEEEECCEEEEEECTTSSEEEE---EECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBS
T ss_pred CceEEEEcCCCceeeeecCCCCeEcc---CCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccccccccc
Confidence 87544322210 0 0012236888 45555544 3467899999998765 44554455
Q ss_pred --ceeEEEEEcCCCEEEEEe-CCCcEEEEEcC
Q 005325 325 --KINDVCVFKDSGLLLLAL-DCSQIPSYFIP 353 (702)
Q Consensus 325 --~I~~v~~~p~~~~l~~a~-~d~~I~~~~ip 353 (702)
.+.+++|+|++..|+.++ .++...+|.+.
T Consensus 350 ~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 350 QVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 578899999998777665 46666666543
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=8.1e-16 Score=175.94 Aligned_cols=261 Identities=10% Similarity=-0.005 Sum_probs=174.9
Q ss_pred CccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCC-CceeEEEECCCCCEEEEE
Q 005325 2 ASRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFE-TATTKIRETPDGEFLIVS 80 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~-~~v~~i~~SpDG~~llat 80 (702)
.|+||+.++..+..+++++||.+.++ . +.+-..++ ..+.+++|||| +. +++
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~g-~-------------------------~~~lt~~~~~~~~~~~~spd-~~-l~~ 80 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDGG-E-------------------------TVKLNREPINSVLDPHYGVG-RV-ILV 80 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETT-E-------------------------EEECCSSCCSEECEECTTCS-EE-EEE
T ss_pred cCCCCCeEEEEEccCCceeEEEEcCC-C-------------------------cEeeecccccccccccCCCC-eE-EEE
Confidence 47899965443344888999999776 1 11112334 47889999999 54 666
Q ss_pred Eec---CCcEEEEE--c--CCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEEEecCCCccceEE
Q 005325 81 GIY---PPQVKVYE--L--RQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHYSLRIPRMGRDMAY 152 (702)
Q Consensus 81 Gs~---dg~I~vwd--l--~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~ 152 (702)
++. +....+|. + ......+... .. .....+++|+..+ ++...++.+.+|++.+............++.+
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~ 157 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQRLEAV-KP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVS 157 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCEECTTS-CS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEE
T ss_pred eccCCCCcceEEEEEeccCCCccccccCC-CC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEE
Confidence 664 45555654 4 3322222222 12 2344677777543 33344445559988743322212122267888
Q ss_pred ecCCCcEEEEecC----CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCC--eEEEEECCCCcceeEEec
Q 005325 153 NSWSCDLLCAASS----PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDG--AVECFDMRMRSSAARINA 226 (702)
Q Consensus 153 ~~~s~~llv~s~d----~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG--~V~iWD~~t~~~v~~l~~ 226 (702)
.|.+..++.++.+ ..|++||+.+++.. .+..|...+..++|+|+|+.|+++..++ .|.+||+.+++.. .+..
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 8888888877766 67999999988864 6778888899999999999999888888 8999999988776 5444
Q ss_pred ccCCCCCCCCeEEEE--------EcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 227 VAPAGDADQEVTALE--------FDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 227 ~~~~~~~~~~Vtsla--------fspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
+ ...+.+++ |+|+ |.++++++.+|.++||++ ++++. .+ ...|.+++|+ ++..+++
T Consensus 236 ~------~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~g~~~l~~~--g~~~~--~~--~~~v~~~~~s----dg~~l~~ 298 (582)
T 3o4h_A 236 P------SKDFSSYRPTAITWLGYLPD-GRLAVVARREGRSAVFID--GERVE--AP--QGNHGRVVLW----RGKLVTS 298 (582)
T ss_dssp S------CSHHHHHCCSEEEEEEECTT-SCEEEEEEETTEEEEEET--TEEEC--CC--SSEEEEEEEE----TTEEEEE
T ss_pred C------CcChhhhhhccccceeEcCC-CcEEEEEEcCCcEEEEEE--CCeec--cC--CCceEEEEec----CCEEEEE
Confidence 4 45555566 9999 888999999999999999 66543 22 3568889997 2444444
Q ss_pred EeCC---CEEEEEeCCC
Q 005325 299 TTDN---HIVRIWDPET 312 (702)
Q Consensus 299 ss~D---g~V~IWd~~t 312 (702)
++.+ ..|.+||..+
T Consensus 299 ~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 299 HTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEETTEEEEEEEETTCC
T ss_pred EcCCCCCCeEEEEcCCC
Confidence 4444 3466777653
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=2.6e-14 Score=151.66 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=155.0
Q ss_pred ccCCCcceEEEEe---cCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeec-ccCCCceeEEEECCCCCEEE
Q 005325 3 SRGGEGNAMKSTL---INGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQD-LWFETATTKIRETPDGEFLI 78 (702)
Q Consensus 3 s~dg~~~~l~~s~---~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd-~~~~~~v~~i~~SpDG~~ll 78 (702)
||||. ++.++. ++.|.+|++..+ . ...+.. ......+..++|+|||++|+
T Consensus 48 spdg~--l~~~~~~~~~~~v~~~~~~~g-~-----------------------~~~~~~~~~~~~~p~~~a~spdg~~l~ 101 (347)
T 3hfq_A 48 SAKDC--LYSVDKEDDEGGIAAWQIDGQ-T-----------------------AHKLNTVVAPGTPPAYVAVDEARQLVY 101 (347)
T ss_dssp CTTCE--EEEEEEETTEEEEEEEEEETT-E-----------------------EEEEEEEEEESCCCSEEEEETTTTEEE
T ss_pred ccCCe--EEEEEecCCCceEEEEEecCC-c-----------------------EEEeeeeecCCCCCEEEEECCCCCEEE
Confidence 67777 344443 467888888666 1 111222 12345678999999999955
Q ss_pred EEEecCCcEEEEEcCC---ceEEEe-eecC--------CceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEE---E
Q 005325 79 VSGIYPPQVKVYELRQ---LSLKFE-RHLD--------SEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYS---L 141 (702)
Q Consensus 79 atGs~dg~I~vwdl~~---~~~~~~-~h~~--------~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~---~ 141 (702)
+++..++.|.+|++.. ...... .+.. ...+..+.++||++.+++...++.|.+|++. +.... .
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 5555789999999963 221111 1111 1125567789999955555668899999987 33222 1
Q ss_pred ecCC--CccceEEecCCCcEEEEe-cCCCEEEEECC--CCeE--EEEeecCC------CCeEEEEEcCCCCEE-EEEEcC
Q 005325 142 RIPR--MGRDMAYNSWSCDLLCAA-SSPELYRINLE--QGRF--LSSLNTQS------PALNVVSRSKLHGLI-ACGGED 207 (702)
Q Consensus 142 ~i~~--~~~~l~~~~~s~~llv~s-~d~~V~vwdl~--~g~~--~~~l~~h~------~~V~~l~~sp~~~ll-asgs~D 207 (702)
..+. ....+++.+.+..+++++ .++.|.+|++. ++.+ +..+.... ..+..++|+|++++| +++..+
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~ 261 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY 261 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence 2222 233688888777677754 46678899876 4654 22333322 348899999999866 556668
Q ss_pred CeEEEEECCCC---cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEE--EcCCCeEEE
Q 005325 208 GAVECFDMRMR---SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-GKVLIY--DLRSSYPIR 271 (702)
Q Consensus 208 G~V~iWD~~t~---~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G~V~lw--Dlrs~~~l~ 271 (702)
+.|.+||+... ..+..+..+ ...+.+++|+|+ |.+|++++.+ +.|.+| |..+++...
T Consensus 262 ~~v~v~~~~~~g~~~~~~~~~~~------~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTLIQQISTE------GDFPRDFDLDPT-EAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TEEEEEEECGGGCEEEEEEEECS------SSCCCEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CEEEEEEECCCCcEEEeEEEecC------CCCcCeEEECCC-CCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 99999999732 445555554 456889999999 9988887764 899999 445666554
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=4.7e-14 Score=151.90 Aligned_cols=261 Identities=13% Similarity=0.106 Sum_probs=170.4
Q ss_pred EEEECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecC------CceEEEEEEcCCCCEEEEEEC--CCeE
Q 005325 67 KIRETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLD------SEIINFEVLADDYSKLAFLCA--DRSI 129 (702)
Q Consensus 67 ~i~~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~------~~vv~~~~ls~dg~~Las~s~--D~~I 129 (702)
.++|||||++++++.. .++.|.+||+.++...-.-... ......+.++|||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7999999999655543 3567999999875442221110 011234568999999988764 6899
Q ss_pred EEEecCCceEEEe-cCCCcc-ceEEecCC-CcEEEEecCCCEEEEECCC-CeEEEE------eecCCCCeEEEEEcCCCC
Q 005325 130 SLHAKYGKHYSLR-IPRMGR-DMAYNSWS-CDLLCAASSPELYRINLEQ-GRFLSS------LNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 130 ~iw~~~g~~~~~~-i~~~~~-~l~~~~~s-~~llv~s~d~~V~vwdl~~-g~~~~~------l~~h~~~V~~l~~sp~~~ 199 (702)
.+|+......... ++..+. .+...+.. ..+++.+.++.+..|++.. ++.... +..+...+ .+.++|++.
T Consensus 134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 9999985444444 443322 24445544 3467778889999898765 665422 22222222 233456777
Q ss_pred EEEEEEcCCeEEEEECCCCcc--eeEEeccc----CCCCCCCCeEEEEEcCCCCCEEEEEeC-----------CCeEEEE
Q 005325 200 LIACGGEDGAVECFDMRMRSS--AARINAVA----PAGDADQEVTALEFDSNGGFLMGVGSS-----------TGKVLIY 262 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~--v~~l~~~~----~~~~~~~~Vtslafspd~g~~LasGs~-----------DG~V~lw 262 (702)
.++..+.++.|.+||+..... +..+.... ...........++|+|+ +..++++.. .+.|.+|
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d-g~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA-SGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT-TTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC-CCeEEEEEccCCCcccccCCCceEEEE
Confidence 777778899999999976542 22222110 00000011223789999 777776543 3589999
Q ss_pred EcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC--ceeEEecCCCCceeEEEEEcCCC
Q 005325 263 DLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG--ESMTSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 263 Dlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg--~~l~~i~~h~~~I~~v~~~p~~~ 336 (702)
|+.+.+.+....- +. +.+|+|+| ++. +|.++..+.|.|||..++ +.+..+..+....+.++++|+++
T Consensus 292 D~~t~~~v~~i~~--~~-p~~ia~sp---dg~-~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 292 DTKTKQRVARIPG--RD-ALSMTIDQ---QRN-LMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTTTEEEEEEEC--TT-CCEEEEET---TTT-EEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcEEEEEec--CC-eeEEEECC---CCC-EEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999998874433 23 89999998 444 554443499999999999 99999876677888999999875
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=1e-13 Score=148.96 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=175.3
Q ss_pred EEEEecC--CcEEEEEcC--CceEEEeeec---CCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceEEE-ecC--C
Q 005325 78 IVSGIYP--PQVKVYELR--QLSLKFERHL---DSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHYSL-RIP--R 145 (702)
Q Consensus 78 latGs~d--g~I~vwdl~--~~~~~~~~h~---~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~~~-~i~--~ 145 (702)
++.|++. +.|.+|++. +..+...... .......+.+++|+++|++++.+ .|.+|++. |....+ ..+ .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 5677774 468887763 3333322211 11234567789999999988888 99999874 433222 222 2
Q ss_pred CccceEEecCCCcE--EEEe-------------cCCCEEEEECC-CCeEEEEeec----CCCCeEEEEEcCCCCEEEEEE
Q 005325 146 MGRDMAYNSWSCDL--LCAA-------------SSPELYRINLE-QGRFLSSLNT----QSPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 146 ~~~~l~~~~~s~~l--lv~s-------------~d~~V~vwdl~-~g~~~~~l~~----h~~~V~~l~~sp~~~llasgs 205 (702)
....+.+.+.+..+ +++. .++.+.+|++. .++....+.. +...+.+++|+|++++|+++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 23356666665542 3332 57789999997 5766554442 456799999999999887766
Q ss_pred c-CCeEEEEECC-CCcce--eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEcC--CCeEEE----Eee
Q 005325 206 E-DGAVECFDMR-MRSSA--ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TGKVLIYDLR--SSYPIR----VKD 274 (702)
Q Consensus 206 ~-DG~V~iWD~~-t~~~v--~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG~V~lwDlr--s~~~l~----~~~ 274 (702)
. ++.|.+||+. +++.. ..+... .+...+.+++|+|+ |.+|++++. ++.|.+|++. +++... +..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAP----DPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECS----STTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecC----CCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 4 6899999998 66542 333321 11356899999999 988887765 7899999875 455321 111
Q ss_pred ccC---C-C-------CeEEEE-EeeccCCCCCeEEEeC-CC-----EEEEEeCC-CCceeE---EecCCCCceeEEEEE
Q 005325 275 HMF---D-S-------PIVDIK-WHQSINTERPKLITTD-NH-----IVRIWDPE-TGESMT---SIEPTAGKINDVCVF 332 (702)
Q Consensus 275 h~~---~-~-------~I~sl~-fsp~~~~~~~ll~ss~-Dg-----~V~IWd~~-tg~~l~---~i~~h~~~I~~v~~~ 332 (702)
... + . .+..++ |+| ++..++++.. .+ .|.+|++. +|++.. .+..+...+..++|+
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~sp---dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s 315 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTF---SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECT---TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred CCCCcCCcccccccccccccEEEECC---CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence 100 1 1 478999 998 3444545442 33 89999996 676543 243345567889999
Q ss_pred c---CCCEEEEEeCC-CcEEEEEcC
Q 005325 333 K---DSGLLLLALDC-SQIPSYFIP 353 (702)
Q Consensus 333 p---~~~~l~~a~~d-~~I~~~~ip 353 (702)
| ++.+|++++.+ +.|.+|.+.
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 9 79999999864 889999764
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=1.1e-13 Score=163.34 Aligned_cols=298 Identities=12% Similarity=0.088 Sum_probs=190.0
Q ss_pred ccCCCcceEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecc---cCCCceeEEEECCCCCEEEE
Q 005325 3 SRGGEGNAMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDL---WFETATTKIRETPDGEFLIV 79 (702)
Q Consensus 3 s~dg~~~~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~---~~~~~v~~i~~SpDG~~lla 79 (702)
++||. ++.+. +++|++|++.++ ... .++... .+......+.|||||++ |+
T Consensus 25 ~~dg~--~~~~~-~~~i~~~~~~~~-~~~----------------------~~~~~~~~~~~~~~~~~~~~Spdg~~-l~ 77 (740)
T 4a5s_A 25 ISDHE--YLYKQ-ENNILVFNAEYG-NSS----------------------VFLENSTFDEFGHSINDYSISPDGQF-IL 77 (740)
T ss_dssp CSSSE--EEEEE-TTEEEEEETTTC-CEE----------------------EEECTTTTTTCCSCCCEEEECTTSSE-EE
T ss_pred CCCCc--EEEEc-CCcEEEEECCCC-ceE----------------------EEEechhhhhhcccccceEECCCCCE-EE
Confidence 67886 34444 889999999988 321 111111 12223456899999999 55
Q ss_pred EEecC---------CcEEEEEcCCceEE-EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEecCCC--
Q 005325 80 SGIYP---------PQVKVYELRQLSLK-FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLRIPRM-- 146 (702)
Q Consensus 80 tGs~d---------g~I~vwdl~~~~~~-~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~i~~~-- 146 (702)
.++.+ +.+.+||+.+.... +..+.. .+....+||||+.||++. ++.|.+|+..+ ....+.....
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~--~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN--NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT--TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEEEcccCCC--cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc
Confidence 55544 56789999885442 233322 367788999999999985 68999998863 3332221111
Q ss_pred ------------------ccceEEecCCCcEEEEecCC------------------------------------CEEEEE
Q 005325 147 ------------------GRDMAYNSWSCDLLCAASSP------------------------------------ELYRIN 172 (702)
Q Consensus 147 ------------------~~~l~~~~~s~~llv~s~d~------------------------------------~V~vwd 172 (702)
...+.+.|.+..|+.++.+. .|++||
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 11366777777666654211 488899
Q ss_pred CCC---C---eEEEEee------cCCCCeEEEEEcCCCCEEEEEEc----CCeEEEEECCCCc----c--eeEE--eccc
Q 005325 173 LEQ---G---RFLSSLN------TQSPALNVVSRSKLHGLIACGGE----DGAVECFDMRMRS----S--AARI--NAVA 228 (702)
Q Consensus 173 l~~---g---~~~~~l~------~h~~~V~~l~~sp~~~llasgs~----DG~V~iWD~~t~~----~--v~~l--~~~~ 228 (702)
+.+ + +... +. .|...+..++|+|++++++.... +..|.+||+.+++ + +..+ ..+
T Consensus 235 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~- 312 (740)
T 4a5s_A 235 TDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST- 312 (740)
T ss_dssp TTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-
T ss_pred CCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-
Confidence 998 7 4333 33 27778999999999987766544 3479999999887 2 2222 222
Q ss_pred CCCCCCCCe-----EEEEEcCCCCCEEE-EEeC-C--CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 229 PAGDADQEV-----TALEFDSNGGFLMG-VGSS-T--GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 229 ~~~~~~~~V-----tslafspd~g~~La-sGs~-D--G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
...| .+++|+|| |..|+ ..+. + .+|.+||+.++.+..+... ...|..+.+ + +++.++..
T Consensus 313 -----~~~v~~~~~~~p~fspD-G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g--~~~v~~~~~-~---d~~~i~f~ 380 (740)
T 4a5s_A 313 -----TGWVGRFRPSEPHFTLD-GNSFYKIISNEEGYRHICYFQIDKKDCTFITKG--TWEVIGIEA-L---TSDYLYYI 380 (740)
T ss_dssp -----SSCSSSSSCCCCEECTT-SSEEEEEEECTTSCEEEEEEETTCSSCEESCCS--SSCEEEEEE-E---CSSEEEEE
T ss_pred -----CceEccCcCCCceEcCC-CCEEEEEEEcCCCceEEEEEECCCCceEecccC--CEEEEEEEE-E---eCCEEEEE
Confidence 2333 37889999 88776 5553 3 4688899988777665443 346666653 3 35556655
Q ss_pred eCC-------CEEEEEeCCCCceeEEecC----CCCceeEEEEEcCCCEEEEEeCC
Q 005325 300 TDN-------HIVRIWDPETGESMTSIEP----TAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 300 s~D-------g~V~IWd~~tg~~l~~i~~----h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
+.. ..|...++..+.....+.. ....+..+.|+|++..++....+
T Consensus 381 ~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 543 3555556655444334543 23578899999999977766655
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=3.5e-14 Score=152.61 Aligned_cols=274 Identities=9% Similarity=-0.006 Sum_probs=173.2
Q ss_pred eeEEEECCCCCEEEEEEecC--CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc-eEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYP--PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK-HYSL 141 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~d--g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~ 141 (702)
+.+++|||||++|+++...+ ..|.+|++.+..................++||++.|++++.++.|.+|+..+. ...+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 56789999999965555443 46888898774432221112222222568999999999999999999998743 2222
Q ss_pred -ecCCCc----cceEE----------------ecCCCcEEEE-----ecCCCEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005325 142 -RIPRMG----RDMAY----------------NSWSCDLLCA-----ASSPELYRINLEQGRFLSSLNTQSPALNVVSRS 195 (702)
Q Consensus 142 -~i~~~~----~~l~~----------------~~~s~~llv~-----s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~s 195 (702)
..+... ..+++ .+....++++ .....|++||+.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 212210 11111 1112222222 34457999999998865544 456679999999
Q ss_pred C-CCCEEEEEEcC------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEE
Q 005325 196 K-LHGLIACGGED------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYD 263 (702)
Q Consensus 196 p-~~~llasgs~D------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwD 263 (702)
| ++..|+.++.+ ..|.+||+..+.. ..+..+ .....+..++|+|+ |..|+.++.+ +.|.+||
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~----~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d 270 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH----AEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKAN 270 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC----CTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc----CCCccccceEECCC-CCEEEEEecCCCCccceEEEEE
Confidence 9 78767766653 3688889876542 222222 00235888999999 8877766544 4599999
Q ss_pred cCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE-e----------------CCCEEEEEeCCCCceeEEecCCCC--
Q 005325 264 LRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT-T----------------DNHIVRIWDPETGESMTSIEPTAG-- 324 (702)
Q Consensus 264 lrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s-s----------------~Dg~V~IWd~~tg~~l~~i~~h~~-- 324 (702)
+.+++...+... . .+. +.|+| .++.+++. + .+..|.+||+.+++.. .+..|..
T Consensus 271 ~~~g~~~~l~~~--~-~~~-~~~s~---~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 271 PETLENEEVMVM--P-PCS-HLMSN---FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp TTTCCEEEEEEC--C-SEE-EEEEC---SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred CCCCCeEEeeeC--C-CCC-CCccC---CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 998876554433 1 233 88885 13445543 2 2478999999887753 3444343
Q ss_pred ---------ceeEEEEEcCCCEEEEEeC-CCcEEEEEcC
Q 005325 325 ---------KINDVCVFKDSGLLLLALD-CSQIPSYFIP 353 (702)
Q Consensus 325 ---------~I~~v~~~p~~~~l~~a~~-d~~I~~~~ip 353 (702)
.+..++|+|++..|+.++. ++...+|.+.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567889999987776664 5566666654
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=6.4e-13 Score=137.00 Aligned_cols=238 Identities=9% Similarity=0.101 Sum_probs=164.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec------CCceEEEEEEcCCCCEEEEEEC-CCeEEEEecC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL------DSEIINFEVLADDYSKLAFLCA-DRSISLHAKY 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~------~~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~ 135 (702)
..+.+|+++++|.+ +++.+.++.|.+||............ ...+..+.+.++++..+++... ++.|.+|+..
T Consensus 30 ~~p~~v~~~~~g~l-~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 30 TEPSGVAVNAQNDI-IVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp SCEEEEEECTTCCE-EEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCCceEEECCCCCE-EEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 45788999999986 78888899999999875333221110 1223344433566655555433 8899999977
Q ss_pred CceEEEe-cCC--CccceEEecCCCcEEEEe-cCCCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCCCEEEEEEcCCe
Q 005325 136 GKHYSLR-IPR--MGRDMAYNSWSCDLLCAA-SSPELYRINLEQGRFLSSLN--TQSPALNVVSRSKLHGLIACGGEDGA 209 (702)
Q Consensus 136 g~~~~~~-i~~--~~~~l~~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~DG~ 209 (702)
+...... ... ....+++.+.. .++++. .++.|++||.. ++.+..+. .+...+++|+++|+++++++.+.++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 7654432 222 23367777655 466665 45779999964 66666664 34457899999999998888888999
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCCeEEE-EeeccCCCCeEEEEEe
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG-KVLIYDLRSSYPIR-VKDHMFDSPIVDIKWH 287 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG-~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fs 287 (702)
|.+||.. +..+..+... .+...+..|+++|+ |.++++...++ .|.+||.. ++.+. +..+.....+.+++|+
T Consensus 187 i~~~~~~-g~~~~~~~~~----g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 187 VKVFNYE-GQYLRQIGGE----GITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp EEEEETT-CCEEEEESCT----TTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEE
T ss_pred EEEEcCC-CCEEEEEccC----CccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEEC
Confidence 9999984 4555555433 11257899999999 88888887776 99999964 44444 4444323347899999
Q ss_pred eccCCCCCeEEEeCCCEEEEEeCCCCc
Q 005325 288 QSINTERPKLITTDNHIVRIWDPETGE 314 (702)
Q Consensus 288 p~~~~~~~ll~ss~Dg~V~IWd~~tg~ 314 (702)
| ++.+++++.++.|+||++....
T Consensus 260 ~----~g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 260 D----DGSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp T----TTEEEEEETTTEEEEEECSCCC
T ss_pred C----CCcEEEECCCCeEEEEEccccc
Confidence 7 5677777779999999986543
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.61 E-value=4.4e-13 Score=143.99 Aligned_cols=246 Identities=10% Similarity=-0.006 Sum_probs=158.5
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcC-CceEE-Eeeec-CCceEEEEEEcCCCCE--EEEEE-------------
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELR-QLSLK-FERHL-DSEIINFEVLADDYSK--LAFLC------------- 124 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~-~~~~~-~~~h~-~~~vv~~~~ls~dg~~--Las~s------------- 124 (702)
..+..++|+|||++ |++++.+ .|.+|++. +..+. ...+. ...+ ..+.++||++. ++++.
T Consensus 40 ~~~~~~a~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHP-RANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSG-GGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEeecCCCC-ccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 35788999999999 5666666 99999986 53332 11221 1222 23567899885 34442
Q ss_pred CCCeEEEEecC--CceEE-Eec-----CCCccceEEecCCCcEEEEec-CCCEEEEECC-CCeEE--EEee--cCCCCeE
Q 005325 125 ADRSISLHAKY--GKHYS-LRI-----PRMGRDMAYNSWSCDLLCAAS-SPELYRINLE-QGRFL--SSLN--TQSPALN 190 (702)
Q Consensus 125 ~D~~I~iw~~~--g~~~~-~~i-----~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~-~g~~~--~~l~--~h~~~V~ 190 (702)
.++++.+|++. |.... +.. ......+.+.+.+..++++.. ++.|++|++. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 68999999885 43322 221 123347788887777777664 5689999998 77653 3333 2456799
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEECC--CCcce---eEEecc-cCCCCCCC------CeEEEE-EcCCCCCEEEEEeCC
Q 005325 191 VVSRSKLHGLIACGGE-DGAVECFDMR--MRSSA---ARINAV-APAGDADQ------EVTALE-FDSNGGFLMGVGSST 256 (702)
Q Consensus 191 ~l~~sp~~~llasgs~-DG~V~iWD~~--t~~~v---~~l~~~-~~~~~~~~------~Vtsla-fspd~g~~LasGs~D 256 (702)
.++|+|++++|++++. ++.|.+|++. +++.. ..+... .....+.. .+.+++ |+|+ |.+|++++.+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd-G~~l~v~~~~ 275 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-GKYMFASSRA 275 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEE
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC-CCEEEEECCC
Confidence 9999999998887775 7899999875 45432 222221 00001111 588999 9999 9888876643
Q ss_pred C------eEEEEEcC-CCeEEEE---eeccCCCCeEEEEEeeccCCCCCeEEEeC-CCEEEEEeCCCC
Q 005325 257 G------KVLIYDLR-SSYPIRV---KDHMFDSPIVDIKWHQSINTERPKLITTD-NHIVRIWDPETG 313 (702)
Q Consensus 257 G------~V~lwDlr-s~~~l~~---~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-Dg~V~IWd~~tg 313 (702)
. .|.+|++. +++...+ ... ....+..++|+|..-++..+++++. ++.|.||++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPT-PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEEC-SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeec-CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 5664432 221 1345678899981003455555554 689999998765
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=1e-12 Score=135.47 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=169.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC--------CCccceEEecCCCcEEEEec--CCCEEEEECCCCe
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP--------RMGRDMAYNSWSCDLLCAAS--SPELYRINLEQGR 177 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~--------~~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~ 177 (702)
...+.+++++..+++...++.|.+|+..+........ .....+++......++++.. ++.|++|| .+++
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 4455678888888887889999999988654432211 12235666556667888774 78899999 6677
Q ss_pred EEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 178 FLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 178 ~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
.+..+.. +...+++++++|+++++++.+.++.|.+||.. ++.+..+... .+...+.+|+++|+ |.++++.+.+
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~----~~~~~p~~i~~~~~-g~l~v~~~~~ 184 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS----KHLEFPNGVVVNDK-QEIFISDNRA 184 (286)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT----TTCSSEEEEEECSS-SEEEEEEGGG
T ss_pred EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC----CccCCcEEEEECCC-CCEEEEECCC
Confidence 7776643 34578999999999988888888999999965 5555555432 11356899999999 8888887889
Q ss_pred CeEEEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC-EEEEEeCCCCceeEEecCCCC--ceeEEEE
Q 005325 257 GKVLIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNH-IVRIWDPETGESMTSIEPTAG--KINDVCV 331 (702)
Q Consensus 257 G~V~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg-~V~IWd~~tg~~l~~i~~h~~--~I~~v~~ 331 (702)
+.|.+||... ..+. +..+.....+..|+++| ++.++++. .++ .|.+||. +++.+..+..+.. .+.++++
T Consensus 185 ~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~----~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 185 HCVKVFNYEG-QYLRQIGGEGITNYPIGVGINS----NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp TEEEEEETTC-CEEEEESCTTTSCSEEEEEECT----TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred CEEEEEcCCC-CEEEEEccCCccCCCcEEEECC----CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 9999999854 4443 33221124678999997 55666665 454 9999995 5777777765433 4778999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
.|++.++++ +.++.|.+|.+....|
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCCcEEEE-CCCCeEEEEEcccccc
Confidence 998875555 6789999998765443
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=7.9e-14 Score=164.44 Aligned_cols=281 Identities=9% Similarity=0.005 Sum_probs=176.4
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCc-eEEE--EEEcCCCCEEEEEECC---------
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSE-IINF--EVLADDYSKLAFLCAD--------- 126 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~-vv~~--~~ls~dg~~Las~s~D--------- 126 (702)
|.....+++|+|||++ ++++ ++.|++||+.+... .+..|.... .+.+ ..+||||++|++.+.+
T Consensus 15 ~~~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp SCCCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccccEECCCCcE-EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 4445678999999988 6775 89999999987432 334442211 1222 5789999999999886
Q ss_pred CeEEEEecCCceEE-Eec-CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEE-eecCCCCe--------------
Q 005325 127 RSISLHAKYGKHYS-LRI-PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSS-LNTQSPAL-------------- 189 (702)
Q Consensus 127 ~~I~iw~~~g~~~~-~~i-~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~-l~~h~~~V-------------- 189 (702)
+.+.+|++.+.... +.. +.......+.|.+..|+.+ .++.|++||+.++...+. ..++...+
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 45679998854322 111 2223366777777777666 578999999998875442 22232222
Q ss_pred ---EEEEEcCCCCEEEEEEcCC------------------------------------eEEEEECCC---Ccc--eeEEe
Q 005325 190 ---NVVSRSKLHGLIACGGEDG------------------------------------AVECFDMRM---RSS--AARIN 225 (702)
Q Consensus 190 ---~~l~~sp~~~llasgs~DG------------------------------------~V~iWD~~t---~~~--v~~l~ 225 (702)
..+.|+|+|+.||.++.|. +|.+||+.+ +.. ...+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3589999999999886432 477888887 642 22333
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCCe----EEE---E--eeccCCCCeE-----EEEEe
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSS----TGKVLIYDLRSSY----PIR---V--KDHMFDSPIV-----DIKWH 287 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~----DG~V~lwDlrs~~----~l~---~--~~h~~~~~I~-----sl~fs 287 (702)
.......+...|..++|+|| |..++.... +..|.+||+.+++ +.. + ..| ...|. .+.|+
T Consensus 251 ~~~~~~~~~~~~~~~~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~--~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST--TGWVGRFRPSEPHFT 327 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS--SSCSSSSSCCCCEEC
T ss_pred CCccCCCCCeEEEEEEEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC--CceEccCcCCCceEc
Confidence 21000013567999999999 886665543 3379999999876 211 1 233 33333 78899
Q ss_pred eccCCCCCeE-EEeC---CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC-EEEEEeC----CCcEEEEEcC
Q 005325 288 QSINTERPKL-ITTD---NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG-LLLLALD----CSQIPSYFIP 353 (702)
Q Consensus 288 p~~~~~~~ll-~ss~---Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~-~l~~a~~----d~~I~~~~ip 353 (702)
| ++..++ ..++ ...|.+||+.++... .+......|..+.+ ++++ ++++++. .+..++|.+.
T Consensus 328 p---DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 328 L---DGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp T---TSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred C---CCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 8 444454 4443 357888998876654 44443556766643 4355 4445544 3456666654
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=1.5e-12 Score=137.85 Aligned_cols=169 Identities=8% Similarity=0.073 Sum_probs=121.8
Q ss_pred CCCCeEEEEEcC-CCCEEEEEE-cCCeEEEEECCCCcceeEEecccCC----CCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 005325 185 QSPALNVVSRSK-LHGLIACGG-EDGAVECFDMRMRSSAARINAVAPA----GDADQEVTALEFDSNGGFLMGVGSSTGK 258 (702)
Q Consensus 185 h~~~V~~l~~sp-~~~llasgs-~DG~V~iWD~~t~~~v~~l~~~~~~----~~~~~~Vtslafspd~g~~LasGs~DG~ 258 (702)
+....+.|+++| ++.++++.+ .++.|.+|| .++..+..+...... ..+-.....|+++|+++.++++...++.
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~ 219 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR 219 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence 445689999999 788888886 689999999 456766666533100 0112448999999985667777778899
Q ss_pred EEEEEcCCCeEEEEe-eccCCCCeEEEEEeecc---CCCCCeEEEeCCCEEEEEeCCCCceeEEec---CCCCceeEEEE
Q 005325 259 VLIYDLRSSYPIRVK-DHMFDSPIVDIKWHQSI---NTERPKLITTDNHIVRIWDPETGESMTSIE---PTAGKINDVCV 331 (702)
Q Consensus 259 V~lwDlrs~~~l~~~-~h~~~~~I~sl~fsp~~---~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~---~h~~~I~~v~~ 331 (702)
|.+||..+++.+... ....+..+.+++|+|.. .++..+++...+..|++|+..+++.+..+. .+...+..|++
T Consensus 220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 220 IQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp EEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred EEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 999999988877643 23346678899998611 011111112235689999999999999884 55677899999
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+|++.++++...+..|..|.+..
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCc
Confidence 99997777777888999987643
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=2.8e-13 Score=156.98 Aligned_cols=273 Identities=12% Similarity=0.032 Sum_probs=170.7
Q ss_pred CCCCCE-EEEEEecCCcEEEEEcC----CceEEEeeec---CCceEEEEEEcCCCCEEEEEECC----------CeEEEE
Q 005325 71 TPDGEF-LIVSGIYPPQVKVYELR----QLSLKFERHL---DSEIINFEVLADDYSKLAFLCAD----------RSISLH 132 (702)
Q Consensus 71 SpDG~~-llatGs~dg~I~vwdl~----~~~~~~~~h~---~~~vv~~~~ls~dg~~Las~s~D----------~~I~iw 132 (702)
||||++ |+++...+..|.+|++. .....+.... ....+....++|||+.|++++.+ ..|.+|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 599998 66665556788888876 4333333321 12235667799999999999877 589999
Q ss_pred ecCC------ceEEEec-C--CCccceEEecCCCcEEEEecC--------CCEEEEECC-CC---eEEEEeecCCCCeEE
Q 005325 133 AKYG------KHYSLRI-P--RMGRDMAYNSWSCDLLCAASS--------PELYRINLE-QG---RFLSSLNTQSPALNV 191 (702)
Q Consensus 133 ~~~g------~~~~~~i-~--~~~~~l~~~~~s~~llv~s~d--------~~V~vwdl~-~g---~~~~~l~~h~~~V~~ 191 (702)
+..+ ....... . .....+.+.+.+..|++++.+ ..|++||+. ++ ........|...+..
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~ 246 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ 246 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence 9876 3333222 1 122367788877778777754 369999999 67 444444556778999
Q ss_pred EEEcCCCCEEEEEEcCC--eEEEEECCCCcceeEEecccCCC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE--EcC
Q 005325 192 VSRSKLHGLIACGGEDG--AVECFDMRMRSSAARINAVAPAG--DADQEVTALEFDSNGGFLMGVGSSTGKVLIY--DLR 265 (702)
Q Consensus 192 l~~sp~~~llasgs~DG--~V~iWD~~t~~~v~~l~~~~~~~--~~~~~Vtslafspd~g~~LasGs~DG~V~lw--Dlr 265 (702)
++|+|++.+++++..++ .|.+||+.+++....+..+.... .-...+.+++|+|+ +.++++++. +.+.|| |+.
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN-GLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT-SCEEEEEBS-SSCEEEEEETT
T ss_pred eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC-CEEEEEEEc-CccEEEEEECC
Confidence 99999999888888888 66777776665433222221000 00112568999999 999999998 999999 666
Q ss_pred CCeEEEEeeccCCCCeEEE-EEeeccCCCCCeE-EEe-CCC--EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 266 SSYPIRVKDHMFDSPIVDI-KWHQSINTERPKL-ITT-DNH--IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 266 s~~~l~~~~h~~~~~I~sl-~fsp~~~~~~~ll-~ss-~Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
++....+..| ...+..+ +++ +..++ +++ .+. .|.+||+.+++.......|...+....+.+...+.+.
T Consensus 325 ~~~~~~l~~~--~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 397 (662)
T 3azo_A 325 SGELVDAAGP--WTEWAATLTVS-----GTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFT 397 (662)
T ss_dssp TTEEEECCSS--CCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEE
T ss_pred CCcEEEecCC--CCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEE
Confidence 6665445555 4566666 444 33344 333 343 5666677777765444454434433333333333333
Q ss_pred EeCCCcEEEEEc
Q 005325 341 ALDCSQIPSYFI 352 (702)
Q Consensus 341 a~~d~~I~~~~i 352 (702)
+.++..|..|..
T Consensus 398 ~~dg~~i~~~~~ 409 (662)
T 3azo_A 398 APDGREIHAHIY 409 (662)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 334556766654
No 172
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=2.7e-11 Score=124.60 Aligned_cols=272 Identities=11% Similarity=0.049 Sum_probs=183.5
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+.+|+++++|.. +++...++.|.+||.......+...........+.+++++..+++...++.|..|+..+....+.
T Consensus 15 ~~~~~i~~d~~g~l-~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 93 (299)
T 2z2n_A 15 TGPYGITVSDKGKV-WITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT 93 (299)
T ss_dssp CCEEEEEECTTSCE-EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCccceEECCCCCE-EEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEe
Confidence 56889999999987 55555578999999883222222111223355666778888777766688899999887655555
Q ss_pred cCCC---ccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 143 IPRM---GRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~---~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
++.. ...+++.+. ..++++.. ++.|++||. ++..... +..+...++++++.+++.++++...++.|.+||. +
T Consensus 94 ~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 94 LPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred CCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 4422 225666553 45766654 678999999 6655432 2234457899999999988888777899999999 6
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
++... +... .....+.+|+++++ |.++++...++.|.+||. ++....+........+.+|++.| ++.+.
T Consensus 171 g~~~~-~~~~----~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~----~g~l~ 239 (299)
T 2z2n_A 171 GDITE-FKIP----TPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA----GIDLW 239 (299)
T ss_dssp CCEEE-EECS----STTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS----TTCEE
T ss_pred CcEEE-eeCC----CCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC----CCCEE
Confidence 55433 3222 11356889999999 887777667889999999 66644332221245789999987 55666
Q ss_pred EEe-CCCEEEEEeCCCCceeEE-ecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 298 ITT-DNHIVRIWDPETGESMTS-IEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 298 ~ss-~Dg~V~IWd~~tg~~l~~-i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++. .++.|.+||. ++..... +..+...+.++++ +++.+ ++++..+.+..|..
T Consensus 240 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l-~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 240 FTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETI-WFAMECDKIGKLTL 293 (299)
T ss_dssp EEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCE-EEEETTTEEEEEEE
T ss_pred EeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCE-EEEecCCcEEEEEc
Confidence 665 6789999998 4543322 3344567899999 76664 44544566666654
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=2.5e-13 Score=145.96 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=145.2
Q ss_pred eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceE-EE-EEEcCCCCEEEEEE-------------------
Q 005325 66 TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEII-NF-EVLADDYSKLAFLC------------------- 124 (702)
Q Consensus 66 ~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv-~~-~~ls~dg~~Las~s------------------- 124 (702)
..++|||||++ |+.++.+..|.+||+.+.............+ .. ..+++++..++...
T Consensus 84 ~~~~~spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 84 FGGFLSPDDDA-LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp SSCEECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred cceEEcCCCCE-EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 35789999999 7777788899999998844322211122222 22 23588998887543
Q ss_pred ---CCCeEEEEecC-CceEEEe-cCCCccceEEec-CCCcEEEEecC------CCEEEEECCCCeEEEEeecCC--CCeE
Q 005325 125 ---ADRSISLHAKY-GKHYSLR-IPRMGRDMAYNS-WSCDLLCAASS------PELYRINLEQGRFLSSLNTQS--PALN 190 (702)
Q Consensus 125 ---~D~~I~iw~~~-g~~~~~~-i~~~~~~l~~~~-~s~~llv~s~d------~~V~vwdl~~g~~~~~l~~h~--~~V~ 190 (702)
.+..|.+|++. +....+. .+.....+.+.| .+..++.+... ..|+++|+..+... .+..+. ..+.
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 241 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCT 241 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEE
T ss_pred ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccc
Confidence 34678889887 4333332 222234677777 55556665543 37999998766543 343444 2577
Q ss_pred EEEEcCCCCEEEEEEc-CC----eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE---------eCC
Q 005325 191 VVSRSKLHGLIACGGE-DG----AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG---------SST 256 (702)
Q Consensus 191 ~l~~sp~~~llasgs~-DG----~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG---------s~D 256 (702)
.++|+|+++.|+..+. ++ .|.+||+.+++......... .......+..++|+|+ |..|+.. ..+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGD-GSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEE-ECCC------------CCC
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccC-CCcceeEeeeccccccCCC
Confidence 8899999986655443 22 39999999887433222210 0000000122379999 8877754 456
Q ss_pred CeEEEEEcCCCeEEEEeeccCCC---------CeEEEEEeeccCCCCCeEEEeC-CCEEEEEeC
Q 005325 257 GKVLIYDLRSSYPIRVKDHMFDS---------PIVDIKWHQSINTERPKLITTD-NHIVRIWDP 310 (702)
Q Consensus 257 G~V~lwDlrs~~~l~~~~h~~~~---------~I~sl~fsp~~~~~~~ll~ss~-Dg~V~IWd~ 310 (702)
..|.+||+.+++...+..+.... .+.+++|+| ++..++.+++ ++...||.+
T Consensus 320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp---Dg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP---DDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT---TSSEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC---CCCEEEEEecCCCceeEEEE
Confidence 78999999998876666662100 478889998 4555666653 566666644
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.57 E-value=3e-13 Score=156.78 Aligned_cols=278 Identities=10% Similarity=0.004 Sum_probs=180.8
Q ss_pred CCCceeEEEECCCCCEEEEEE--ecCCcEEEEEcCC--ceEEEeeecCCceE---------EEEEE-cCCCCE-EEEEEC
Q 005325 61 FETATTKIRETPDGEFLIVSG--IYPPQVKVYELRQ--LSLKFERHLDSEII---------NFEVL-ADDYSK-LAFLCA 125 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatG--s~dg~I~vwdl~~--~~~~~~~h~~~~vv---------~~~~l-s~dg~~-Las~s~ 125 (702)
+...+..++|++++-+ ++++ ..++...||.... ....+..+. ..+. .+.+. |||++. |++++.
T Consensus 22 ~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp TCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 4567889999988655 5666 4578899998533 222333332 2222 34455 599998 777654
Q ss_pred -CCeEEEEecC----CceEEEecC----CC--ccceEEecCCCcEEEEecC----------CCEEEEECCC------CeE
Q 005325 126 -DRSISLHAKY----GKHYSLRIP----RM--GRDMAYNSWSCDLLCAASS----------PELYRINLEQ------GRF 178 (702)
Q Consensus 126 -D~~I~iw~~~----g~~~~~~i~----~~--~~~l~~~~~s~~llv~s~d----------~~V~vwdl~~------g~~ 178 (702)
+..|.+|+.. +....+... .. ...+.+.+.+..|++++.+ ..|++||+.+ +..
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 5667777766 443333221 11 2267788888888877766 4799999988 554
Q ss_pred EEEee-cCCCCeEEEEEcCCCCEEEEEEcC--------CeEEEEECC-CC---cceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 179 LSSLN-TQSPALNVVSRSKLHGLIACGGED--------GAVECFDMR-MR---SSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 179 ~~~l~-~h~~~V~~l~~sp~~~llasgs~D--------G~V~iWD~~-t~---~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
..+. .+...+..++|+|+++.|++++.+ ..|.+||+. ++ ........+ ...+.+++|+||
T Consensus 180 -~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~------~~~~~~~~~spd 252 (662)
T 3azo_A 180 -RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP------EEAIAQAEWAPD 252 (662)
T ss_dssp -EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET------TBCEEEEEECTT
T ss_pred -eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC------CceEcceEECCC
Confidence 3454 555678889999999999988865 379999998 56 333333333 478999999999
Q ss_pred CCCEEEEEeCCC--eEEEEEcCCCeEEEEeeccCCC--C-----eEEEEEeeccCCCCCeEEEeCCCEEEEE--eCCCCc
Q 005325 246 GGFLMGVGSSTG--KVLIYDLRSSYPIRVKDHMFDS--P-----IVDIKWHQSINTERPKLITTDNHIVRIW--DPETGE 314 (702)
Q Consensus 246 ~g~~LasGs~DG--~V~lwDlrs~~~l~~~~h~~~~--~-----I~sl~fsp~~~~~~~ll~ss~Dg~V~IW--d~~tg~ 314 (702)
|.+++++..+| .|.+||+.+++...+..+.... + +.+++|+| ++.+++++..+.++|| |+.+++
T Consensus 253 -g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 253 -GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA----NGLIAVVHGKGAAVLGILDPESGE 327 (662)
T ss_dssp -SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT----TSCEEEEEBSSSCEEEEEETTTTE
T ss_pred -CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC----CCEEEEEEEcCccEEEEEECCCCc
Confidence 88888888888 6777777677765543331111 1 56788886 5666665533888999 555555
Q ss_pred eeEEecCCCCceeEE-EEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 315 SMTSIEPTAGKINDV-CVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 315 ~l~~i~~h~~~I~~v-~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
+..+..|...+..+ ++.++.-++++++.+....+|.+.
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 67788877778777 443332233334555555666553
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=1.8e-12 Score=137.16 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=168.0
Q ss_pred CceeEEEECCCCCEEEEEE--------ecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC---Ce--E
Q 005325 63 TATTKIRETPDGEFLIVSG--------IYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD---RS--I 129 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatG--------s~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D---~~--I 129 (702)
..+..+++ ||++|+.+. .+++.|.+|++.+...... ..+....+||||++|++++.+ +. |
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44566777 999965543 2367899999987443222 124566789999999988764 34 6
Q ss_pred EEEecCC-ceEEE-ecCCCccceEEecCCCcEEEEecC---------------------------CCEEEEECCCCeEEE
Q 005325 130 SLHAKYG-KHYSL-RIPRMGRDMAYNSWSCDLLCAASS---------------------------PELYRINLEQGRFLS 180 (702)
Q Consensus 130 ~iw~~~g-~~~~~-~i~~~~~~l~~~~~s~~llv~s~d---------------------------~~V~vwdl~~g~~~~ 180 (702)
.+|+..+ ....+ ..+. ...+.+.+.+..|++++.+ ..|++||+.+++.+.
T Consensus 88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 6667764 33322 2233 4467777777667776632 469999999998755
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCC-------eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDG-------AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG-------~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
.+.. . .+..++|+|++ ++++++.++ ...||.+.+++ +..+..+ ..+.++ +|+ |..|+.+
T Consensus 167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-------~~~~~~--spd-g~~l~~~ 232 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-------VSFYAV--DSD-GERILLY 232 (347)
T ss_dssp EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-------ESEEEE--EEC-SSCEEEE
T ss_pred eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-------cceeeE--CCC-CCEEEEE
Confidence 5554 3 78899999999 888776542 33444443443 3333222 234444 899 8888877
Q ss_pred eCC--------CeEEEEEcCCCeEEEEeeccCCCCeEE-EEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCC
Q 005325 254 SST--------GKVLIYDLRSSYPIRVKDHMFDSPIVD-IKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAG 324 (702)
Q Consensus 254 s~D--------G~V~lwDlrs~~~l~~~~h~~~~~I~s-l~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~ 324 (702)
+.+ ..|.+|| +++...+... +...|.. +.|+ ++.+++++.++.++|| +.+++....+. +..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-----dg~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~ 302 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-----GKVYFTLFEEGSVNLY-IWDGEIKPIAK-GRH 302 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-----TEEEEEEEETTEEEEE-EESSSEEEEEC-SSS
T ss_pred EccccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-----CcEEEEEecCCcEEEE-EcCCceEEEec-CCC
Confidence 654 4788888 5555443322 2456776 8885 3344455578999999 88776644444 478
Q ss_pred ceeEEEEEcCCCEEEEEeCCCcE-EEEEcC
Q 005325 325 KINDVCVFKDSGLLLLALDCSQI-PSYFIP 353 (702)
Q Consensus 325 ~I~~v~~~p~~~~l~~a~~d~~I-~~~~ip 353 (702)
.|.+++|+| .++++++.+... .+|.+.
T Consensus 303 ~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 303 WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 899999999 778887777665 677665
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=3e-12 Score=132.89 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=154.1
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
....+++|+|+|+.|+++++.++.|.+|+..+....+..+ ......+.+++++..+++...++.|.+|+
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~l~~~~dg~l~v~~~~~~~i~~~d--------- 96 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHP--SHHQNGHCLNKQGHLIACSHGLRRLERQR--------- 96 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESS--CSSEEEEEECTTCCEEEEETTTTEEEEEC---------
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECC--CCCcceeeECCCCcEEEEecCCCeEEEEc---------
Confidence 3456899999999668999999999999998762223222 22355566677776555544455555544
Q ss_pred cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCCCEEEE----EE---------
Q 005325 143 IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLHGLIAC----GG--------- 205 (702)
Q Consensus 143 i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~~llas----gs--------- 205 (702)
+.++++...... ....++.++++|+++++++ |+
T Consensus 97 ------------------------------~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 97 ------------------------------EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp ------------------------------STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred ------------------------------CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 444433221111 1235678999999998887 33
Q ss_pred ----cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CCeE---EEEeeccC
Q 005325 206 ----EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR-SSYP---IRVKDHMF 277 (702)
Q Consensus 206 ----~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr-s~~~---l~~~~h~~ 277 (702)
..+.|..||.. +. +..+... ...+..++|+|+ +..|++.+.++.|.+||+. .+.. ..+. ...
T Consensus 147 ~~~~~~~~l~~~~~~-g~-~~~~~~~------~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~ 216 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GT-LSAPIRD------RVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVE 216 (296)
T ss_dssp CCCSSSCEEEEECTT-SC-EEEEECC------CSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCS
T ss_pred cccCCCcEEEEECCC-CC-EEEeecC------CCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCC
Confidence 13466666665 33 3334333 366789999999 8888777888999999997 4444 2222 222
Q ss_pred CCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEE-cCCCEEEEEeCCC
Q 005325 278 DSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVF-KDSGLLLLALDCS 345 (702)
Q Consensus 278 ~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~-p~~~~l~~a~~d~ 345 (702)
...+.+|++.+ ++.+.+++ ++.|.+||.. |+.+..+..+.. +++++|. |+++.|++++.++
T Consensus 217 ~~~p~~i~~d~----~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 217 PGKTDGLRVDA----GGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp SSCCCSEEEBT----TSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCCCCeEEECC----CCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 44567899997 66677777 8899999986 888888887666 9999995 7888888888763
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.52 E-value=4.3e-12 Score=136.55 Aligned_cols=271 Identities=10% Similarity=0.027 Sum_probs=182.5
Q ss_pred CCCCEEEEEEe-----cCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE----------CCCeEEEEecCC
Q 005325 72 PDGEFLIVSGI-----YPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC----------ADRSISLHAKYG 136 (702)
Q Consensus 72 pDG~~llatGs-----~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s----------~D~~I~iw~~~g 136 (702)
+++++++++.. .++.|.+||..+..+...-...... .+.++||++++++++ .+++|.+|+...
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 46677555542 3679999998875543332222322 678999999998876 367899999873
Q ss_pred c--eEEEecC-------CCccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCC-CEEEE
Q 005325 137 K--HYSLRIP-------RMGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLH-GLIAC 203 (702)
Q Consensus 137 ~--~~~~~i~-------~~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~-~llas 203 (702)
. ...+.++ .....+.+.+....|+++.. ++.|.+||+.+++.+.. +... ....+.+.|.+ ..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence 2 2233333 23448889888888988875 57899999999998887 5432 23335677876 78888
Q ss_pred EEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--e------
Q 005325 204 GGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK--D------ 274 (702)
Q Consensus 204 gs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~--~------ 274 (702)
.+.||.+.+|++.. ++................+ ..+.++|+ +..++..+.++.|.+||+......... .
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 89999999999875 4444222210000001122 23445677 777787888999999999765432211 0
Q ss_pred -ccC--CCCeEEEEEeeccCCCCCeEEEeC-----------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEE
Q 005325 275 -HMF--DSPIVDIKWHQSINTERPKLITTD-----------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLL 340 (702)
Q Consensus 275 -h~~--~~~I~sl~fsp~~~~~~~ll~ss~-----------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~ 340 (702)
+.. ......++|+| ++..++++.. .+.|.+||+.+++.+..+..+. +.+|+|+|++.+|++
T Consensus 247 ~~~~~~p~g~~~~a~~~---dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHR---ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp HHTTCEECCSSCEEEET---TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred cccccccCCeeEEEEec---CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEE
Confidence 000 01112378887 4455555532 3589999999999999999865 999999999999998
Q ss_pred EeCCCcEEEEEcCC
Q 005325 341 ALDCSQIPSYFIPD 354 (702)
Q Consensus 341 a~~d~~I~~~~ip~ 354 (702)
++. +.|.+|....
T Consensus 322 ~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 322 LDG-GNVNVYDISQ 334 (361)
T ss_dssp ECS-SCEEEEECSS
T ss_pred eCC-CeEEEEECCC
Confidence 887 8999996543
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.52 E-value=4.3e-12 Score=133.64 Aligned_cols=263 Identities=6% Similarity=-0.017 Sum_probs=172.6
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEEe
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSLR 142 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~~ 142 (702)
.+.+++|++++.. ++..+.++.+++|. ......+..+... .....+++++..+++...++.|.+|+..+ ....+.
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNS-AVPIISESELQTIT-AEPWLEISKKGLQ--LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCBCCSCGGGGC-SSCCCCGGGSCEEE-CEEEEEEESSCCC--EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred ccceeeecCCccc-eeEEeecccCcccc-cceeEEEeccCcc--ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 4677888998877 55556778888882 2222233333222 45556788988777778889999999874 333332
Q ss_pred c--CCCccceEEecCCCcEEEEecC-----CCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCCCEEEEEEc------C
Q 005325 143 I--PRMGRDMAYNSWSCDLLCAASS-----PELYRINLEQGRFLSSLN--TQSPALNVVSRSKLHGLIACGGE------D 207 (702)
Q Consensus 143 i--~~~~~~l~~~~~s~~llv~s~d-----~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~------D 207 (702)
. ......+++.+.. .+++++.. +.|++||+.++.....+. .+...+++++++|++.++++... .
T Consensus 83 ~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 1 2233366666554 56666654 479999998887653332 23457999999999988887654 3
Q ss_pred CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCC-CeEEE------EeeccCCC
Q 005325 208 GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLRS-SYPIR------VKDHMFDS 279 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlrs-~~~l~------~~~h~~~~ 279 (702)
+.|..||..+++...... . ...+.+++|+|+ |..|+ +.+.++.|.+||+.+ +..+. ........
T Consensus 162 ~~l~~~~~~~~~~~~~~~-~------~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 233 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQ-N------ISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233 (333)
T ss_dssp EEEEEECTTSCCEEEEEE-E------ESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred ceEEEEeCCCCEEEEeec-C------CCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence 567777776554333222 2 246889999999 87665 445688999999964 33221 11110013
Q ss_pred CeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCC------ceeEEEEEcCCCEEEEEeCC
Q 005325 280 PIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAG------KINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~------~I~~v~~~p~~~~l~~a~~d 344 (702)
.+..|++++ ++.+.++. .++.|.+||. +++.+..+..+.. .+.+++|+|+++.|++++.+
T Consensus 234 ~~~~i~~d~----~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 234 GPDSCCIDS----DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEEBT----TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCceEECC----CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 578899986 55566555 6789999998 5777777765333 68899999998777766655
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=8.4e-12 Score=132.28 Aligned_cols=247 Identities=7% Similarity=0.008 Sum_probs=173.8
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEecCCceEE--
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHAKYGKHYS-- 140 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~g~~~~-- 140 (702)
....+.+ ++..++++...++.|.+||..+......-..... ...+.+++++ .+..+. .++.|.+|+.......
T Consensus 45 ~~~~i~~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~-p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 45 VAQSMVI--RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS-PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp CEEEEEE--ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS-EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred cceEEEE--ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC-CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence 3456666 3455567777789999999998554222221222 4455566676 554444 7999999998854333
Q ss_pred EecCC------CccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-----
Q 005325 141 LRIPR------MGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED----- 207 (702)
Q Consensus 141 ~~i~~------~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D----- 207 (702)
+.... ....+++ ....++++.. ++.|.+||+.+++.+..+.... ....++++|++.+++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCc
Confidence 33334 3446666 4566787763 7789999999999888876543 46789999999887776654
Q ss_pred -----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeeccCCCC
Q 005325 208 -----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHMFDSP 280 (702)
Q Consensus 208 -----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~~~~~ 280 (702)
+.|.+||+.+++.+..+.... ...+..|+|+|+ +..|.++.. .|.+||+.+++... +... ....
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~-----g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~-~~~~ 268 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKL-----GDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVRPFLEF-RDTK 268 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCT-----TCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSSCSBCC-CSSC
T ss_pred cccCCceEEEEECCCCeEEEEEecCC-----CCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeeeeeecC-CCCc
Confidence 799999999998877776541 246899999999 888887665 89999998877532 1111 1356
Q ss_pred eEEEEEeeccCCCCCeEEEe-----CCCEEEEEeCCCCceeEEecCCCCceeEEEE
Q 005325 281 IVDIKWHQSINTERPKLITT-----DNHIVRIWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss-----~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
...|+++| +++.++++. .++.|.+||.. |+.+.++.. ...-+.++|
T Consensus 269 p~gi~vdp---~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 269 YYGLTVNP---NNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEEEEECT---TTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred eEEEEEcC---CCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 78999997 456666664 58899999998 999988876 444455655
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.50 E-value=1.6e-12 Score=139.48 Aligned_cols=233 Identities=7% Similarity=-0.077 Sum_probs=142.4
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee-cCCceEE---E---------------EEEcCCCCEEEEE----
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH-LDSEIIN---F---------------EVLADDYSKLAFL---- 123 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h-~~~~vv~---~---------------~~ls~dg~~Las~---- 123 (702)
++.|||||++ |+.++.++.|.+|++.+........ ....... + ..++|++..++++
T Consensus 85 ~~~~spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERA-FFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred cceECCCCCE-EEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 4789999999 6777778899999998743321111 1111101 0 1245666665544
Q ss_pred -ECCCeEEEEecCC-ceEEEe-cCCCccceEEec-CCCcEEEEecC------CCEEEEECCCCeEEEEeecCC--CCeEE
Q 005325 124 -CADRSISLHAKYG-KHYSLR-IPRMGRDMAYNS-WSCDLLCAASS------PELYRINLEQGRFLSSLNTQS--PALNV 191 (702)
Q Consensus 124 -s~D~~I~iw~~~g-~~~~~~-i~~~~~~l~~~~-~s~~llv~s~d------~~V~vwdl~~g~~~~~l~~h~--~~V~~ 191 (702)
..+..|.+|++.+ ....+. .+.....+.+.+ ....++.++.+ ..|++||+..+.... +..+. ..+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~ 242 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTH 242 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEE
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccc
Confidence 3566788898874 332222 122233566666 34445555443 369999997765433 32232 25788
Q ss_pred EEEcCCCCEEEEEEcC-----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcC-CCCCEEEEEe-----------
Q 005325 192 VSRSKLHGLIACGGED-----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDS-NGGFLMGVGS----------- 254 (702)
Q Consensus 192 l~~sp~~~llasgs~D-----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafsp-d~g~~LasGs----------- 254 (702)
++|+|++..|+.++.+ +.|.+||+.+++........ .+. +.|+| + |.+|++++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------~~~-~~~s~~d-g~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--------PCS-HLMSNFD-GSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--------SEE-EEEECSS-SSEEEEEECCC--------
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--------CCC-CCccCCC-CceEEEecCCcceeecccc
Confidence 9999999877776554 45999999987654333222 233 89999 8 88888755
Q ss_pred -----CCCeEEEEEcCCCeEEEEeeccCCC---------CeEEEEEeeccCCCCCeEEEeC-CCE--EEEEeCCCCc
Q 005325 255 -----STGKVLIYDLRSSYPIRVKDHMFDS---------PIVDIKWHQSINTERPKLITTD-NHI--VRIWDPETGE 314 (702)
Q Consensus 255 -----~DG~V~lwDlrs~~~l~~~~h~~~~---------~I~sl~fsp~~~~~~~ll~ss~-Dg~--V~IWd~~tg~ 314 (702)
.++.|.+||+.++....+..+.... .+..++|+| ++..++.++. ++. |.++++.++.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP---NDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT---TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc---CCCeEEEEecCCCCceEEEEEEcccc
Confidence 3478999999988765555552110 256788998 4555655553 444 4444555443
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=2.2e-11 Score=128.74 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=146.2
Q ss_pred CceeEEEECCCCCEEEEEEecC--C--cEEEEEcCCceE-EEeeecCCceEEEEEEcCCCCEEEEEECC-----------
Q 005325 63 TATTKIRETPDGEFLIVSGIYP--P--QVKVYELRQLSL-KFERHLDSEIINFEVLADDYSKLAFLCAD----------- 126 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~d--g--~I~vwdl~~~~~-~~~~h~~~~vv~~~~ls~dg~~Las~s~D----------- 126 (702)
..+.+++|||||++|+++.... + .|.+|++.+... .+..+ .. +....++||++.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN--IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE--EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC--ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 3467899999999954444332 3 478888876433 22222 22 5666789999999888743
Q ss_pred ----------------CeEEEEecCC-ce-EEEecCCCccceEEecCCCcEEEEecC---------CCEEEEECCCCeEE
Q 005325 127 ----------------RSISLHAKYG-KH-YSLRIPRMGRDMAYNSWSCDLLCAASS---------PELYRINLEQGRFL 179 (702)
Q Consensus 127 ----------------~~I~iw~~~g-~~-~~~~i~~~~~~l~~~~~s~~llv~s~d---------~~V~vwdl~~g~~~ 179 (702)
..|.+|++.+ .. ..+..+ ....+.+.+.+ -++++..+ ..|+++| +++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~- 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE- 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-
Confidence 5688888874 33 233333 44577777776 44444332 2466777 6654
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEEcC--------CeEEEEECCCCcceeEEecccCCCCCCCCeEE-EEEcCCCCCEE
Q 005325 180 SSLNTQSPALNVVSRSKLHGLIACGGED--------GAVECFDMRMRSSAARINAVAPAGDADQEVTA-LEFDSNGGFLM 250 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp~~~llasgs~D--------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vts-lafspd~g~~L 250 (702)
..+..+ ..+.++ +|+++.|++++.+ ..|.+|| +++....+.. +...+.. +.|+ + + ++
T Consensus 211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~~~~~~~~s-d-g-~~ 276 (347)
T 2gop_A 211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE------VDRGVGQAKIKD-G-K-VY 276 (347)
T ss_dssp EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT------CCSEEEEEEEET-T-E-EE
T ss_pred EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc------CCcccCCccEEc-C-c-EE
Confidence 334444 445544 8999888877754 4688888 4443222222 2467886 9999 8 8 88
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEE-EEEeCCCCceeEEecCCCCc
Q 005325 251 GVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIV-RIWDPETGESMTSIEPTAGK 325 (702)
Q Consensus 251 asGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V-~IWd~~tg~~l~~i~~h~~~ 325 (702)
++++.++.++|| +.++++..+..+ ...|.+++|+| ..+++++.++.. .||.+. ++ ...+..|+..
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~~--~~~v~~~~~s~-----~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAKG--RHWIMGFDVDE-----IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEECS--SSEEEEEEESS-----SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred EEEecCCcEEEE-EcCCceEEEecC--CCeEEeeeeeC-----cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 999999999999 886666555555 56789999983 233344444433 667665 54 4456665543
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=2.8e-10 Score=129.53 Aligned_cols=306 Identities=9% Similarity=-0.012 Sum_probs=190.0
Q ss_pred EecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcC
Q 005325 14 TLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELR 93 (702)
Q Consensus 14 s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~ 93 (702)
..++.|.|+++.++ +++..+.....+..+.|||||++ +++++.++.|.+||+.
T Consensus 174 ~~~~~V~viD~~t~--------------------------~v~~~i~~g~~p~~v~~SpDGr~-lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 174 RDAGQIALIDGSTY--------------------------EIKTVLDTGYAVHISRLSASGRY-LFVIGRDGKVNMIDLW 226 (567)
T ss_dssp TTTTEEEEEETTTC--------------------------CEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECCCC--------------------------eEEEEEeCCCCccceEECCCCCE-EEEEcCCCeEEEEECC
Confidence 34566888888776 23333444456678999999999 5556789999999995
Q ss_pred --CceEEEeeecCCceEEEEEEc----CCCCEEEEEEC-CCeEEEEecCCceEEEecCCCc------------c--ceEE
Q 005325 94 --QLSLKFERHLDSEIINFEVLA----DDYSKLAFLCA-DRSISLHAKYGKHYSLRIPRMG------------R--DMAY 152 (702)
Q Consensus 94 --~~~~~~~~h~~~~vv~~~~ls----~dg~~Las~s~-D~~I~iw~~~g~~~~~~i~~~~------------~--~l~~ 152 (702)
+......-.....+. .+.++ |||+++++++. +++|.++|.........++..+ + .+..
T Consensus 227 ~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 227 MKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 544333332233333 44567 69998876655 6999999976432222222110 1 3333
Q ss_pred ecCCCcEE-EEecCCCEEEEECCCCeEEEEee-cCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEECCCCcceeEEec-cc
Q 005325 153 NSWSCDLL-CAASSPELYRINLEQGRFLSSLN-TQSPALNVVSRSKLHGLIACGG-EDGAVECFDMRMRSSAARINA-VA 228 (702)
Q Consensus 153 ~~~s~~ll-v~s~d~~V~vwdl~~g~~~~~l~-~h~~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t~~~v~~l~~-~~ 228 (702)
.+....++ .....+.|.++|..+...+.... .......++.|+|++++|++++ .++.|.+||+.+++.+..+.. ..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 34334433 33445789999987764332221 2334577899999998877666 578999999999998888776 31
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRS-------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs-------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
..|......+ ++|+.+..++++. .++.|.++|..+ .+.+...... +..-.-|..+| ++.++.+..
T Consensus 386 --~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p---~~~~l~v~~ 458 (567)
T 1qks_A 386 --TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHP---NSQYLYVDA 458 (567)
T ss_dssp --SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCT---TCSEEEEEC
T ss_pred --CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCC---CCCeEEEec
Confidence 1122211122 6887344444553 468999999987 4555533221 22224466787 444555544
Q ss_pred C-------CCEEEEEeCCCC-----c-eeEEec--------CCCCceeEEEEEcCCCEEEEEe-----CCCcEEEEEcCC
Q 005325 301 D-------NHIVRIWDPETG-----E-SMTSIE--------PTAGKINDVCVFKDSGLLLLAL-----DCSQIPSYFIPD 354 (702)
Q Consensus 301 ~-------Dg~V~IWd~~tg-----~-~l~~i~--------~h~~~I~~v~~~p~~~~l~~a~-----~d~~I~~~~ip~ 354 (702)
. ..+|.|+|+.+. . .+..+. .-...+..+.|+|++..++++. .++.|.++....
T Consensus 459 ~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 459 TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 2 469999999876 2 223332 1145788999999999887774 367788876443
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.45 E-value=6.4e-11 Score=138.82 Aligned_cols=270 Identities=9% Similarity=0.009 Sum_probs=178.8
Q ss_pred CCCCEEEEEEecCC----cEEEEEcCCc--eEEEeeec----CCceEEEEEEcCCCCEEEEEECCC-----eEEEEecCC
Q 005325 72 PDGEFLIVSGIYPP----QVKVYELRQL--SLKFERHL----DSEIINFEVLADDYSKLAFLCADR-----SISLHAKYG 136 (702)
Q Consensus 72 pDG~~llatGs~dg----~I~vwdl~~~--~~~~~~h~----~~~vv~~~~ls~dg~~Las~s~D~-----~I~iw~~~g 136 (702)
|||++++.+-...+ .|.+.+.... ...+.... ....+....+||||++|+++..++ .|.+|++.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 89999655544333 3344443321 11111110 112356677899999998877643 899999884
Q ss_pred -ceEEEecCCC-ccceEEecCCCcEEEEecCCC----------------EEEEECCCCe----EEEEeecCCCCeEEEEE
Q 005325 137 -KHYSLRIPRM-GRDMAYNSWSCDLLCAASSPE----------------LYRINLEQGR----FLSSLNTQSPALNVVSR 194 (702)
Q Consensus 137 -~~~~~~i~~~-~~~l~~~~~s~~llv~s~d~~----------------V~vwdl~~g~----~~~~l~~h~~~V~~l~~ 194 (702)
......++.. ...+.|.+.+..|+.++.+.. |++|++.++. .+.....|...+..+.|
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 240 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence 4333333222 346888888888888877655 9999999876 23222334556889999
Q ss_pred cCCCCEEEEEEc-----CCeEEEEECCC------Cc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC----Ce
Q 005325 195 SKLHGLIACGGE-----DGAVECFDMRM------RS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST----GK 258 (702)
Q Consensus 195 sp~~~llasgs~-----DG~V~iWD~~t------~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D----G~ 258 (702)
+|++++|+.++. +..|.+||+.+ +. .+..+..+ ...+.. .|+|+ |..|+..+.. +.
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~s~d-g~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN------FEGEYD-YVTNE-GTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS------SSSCEE-EEEEE-TTEEEEEECTTCTTCE
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC------CCcEEE-EEecc-CCEEEEEECCCCCCCE
Confidence 999998888775 56899999986 43 45566555 344444 48888 7777766553 36
Q ss_pred EEEEEcCCCe---EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC--EEEEEeCCCCceeEEecCCCCceeEEEEE
Q 005325 259 VLIYDLRSSY---PIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNH--IVRIWDPETGESMTSIEPTAGKINDVCVF 332 (702)
Q Consensus 259 V~lwDlrs~~---~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg--~V~IWd~~tg~~l~~i~~h~~~I~~v~~~ 332 (702)
|.+||+.++. ...+..|.....|..++|++ ++.++++. .++ .|.+|++.+|+.+..+..+.+.|..++++
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s 388 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVR----SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQ 388 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEET----TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECC
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEc----CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecC
Confidence 9999998864 23355553224688899985 56666655 566 46777887888888888877889999999
Q ss_pred cCCCEEEEEeC----CCcEEEEEcC
Q 005325 333 KDSGLLLLALD----CSQIPSYFIP 353 (702)
Q Consensus 333 p~~~~l~~a~~----d~~I~~~~ip 353 (702)
|++..++.... .+.+..|.+.
T Consensus 389 ~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 389 KKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp TTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECC
Confidence 98876654422 2456666654
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=4.1e-11 Score=129.09 Aligned_cols=259 Identities=15% Similarity=0.116 Sum_probs=168.5
Q ss_pred EEECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecCC-------ceEEEEEEcCCCCEEEEEEC--CCeE
Q 005325 68 IRETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLDS-------EIINFEVLADDYSKLAFLCA--DRSI 129 (702)
Q Consensus 68 i~~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~~-------~vv~~~~ls~dg~~Las~s~--D~~I 129 (702)
+++||||++++++.+ .++.|.+||+.++...-.-.... .--..+.+++||++|+.+.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 999999999666653 35789999999865432221110 01224568999999988764 6899
Q ss_pred EEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCC-CeEEEEeecCC----CCe-EEEEEc-CCCCEEE
Q 005325 130 SLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ-GRFLSSLNTQS----PAL-NVVSRS-KLHGLIA 202 (702)
Q Consensus 130 ~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~~l~~h~----~~V-~~l~~s-p~~~lla 202 (702)
.++|.......-.++-.+....+-.....+++.+.||.+.++++.+ ++.......+. ..+ +...|. ++|.+++
T Consensus 163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 242 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW 242 (386)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE
Confidence 9999986554444443332223322233467788899999999976 66433221111 122 123554 5665444
Q ss_pred EEEcCCeEEEEECCCCc--ceeEEecccC----CCCCCCCeEEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC
Q 005325 203 CGGEDGAVECFDMRMRS--SAARINAVAP----AGDADQEVTALEFDSNGGFLMGVGSS----------TGKVLIYDLRS 266 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~--~v~~l~~~~~----~~~~~~~Vtslafspd~g~~LasGs~----------DG~V~lwDlrs 266 (702)
.+.+|.|.+.|+.+.. .+..+..... .......+..++++|+ +..|++... .+.|.++|+.+
T Consensus 243 -vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~-~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 243 -PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA-LDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp -EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT-TTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred -EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC-CCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 5668999999998654 3333331000 0000134456788999 777777643 25799999999
Q ss_pred CeEEEEeeccCCCCeEEEEEeeccCCCC-CeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 267 SYPIRVKDHMFDSPIVDIKWHQSINTER-PKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 267 ~~~l~~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
.+.+....- +.++++|+++| ++. .|+++. .++.|.|+|..+++.+.++.. .+.-+.|++++|
T Consensus 321 ~kv~~~i~v--g~~~~~lavs~---D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 321 GERLAKFEM--GHEIDSINVSQ---DEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp CCEEEEEEE--EEEECEEEECS---SSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred CeEEEEEEC--CCCcceEEECC---CCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence 998874443 34789999998 444 344444 489999999999999999988 777788888876
No 185
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=7.1e-10 Score=113.91 Aligned_cols=271 Identities=9% Similarity=0.041 Sum_probs=180.7
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+.+|+++++|.. +++...++.|.+|+.......+...........+.+.+++..+++...++.|..++..+....+.
T Consensus 20 ~~p~~i~~d~~g~l-~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~ 98 (300)
T 2qc5_A 20 SGPYGITSSEDGKV-WFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYP 98 (300)
T ss_dssp CCEEEEEECTTSCE-EEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCcceeeECCCCCE-EEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEec
Confidence 46789999999986 66666788999999873222222111112345556778888777666678899998887665555
Q ss_pred cCCC---ccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 143 IPRM---GRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~---~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
.+.. ...+++.+ ...++++.. ++.|++||.. ++.... +......++++++.++++++++...++.|..||. +
T Consensus 99 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 99 LPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 5422 22555554 345776665 6789999988 665532 3334457899999999997777766889999998 5
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
++... +... .....+.+|+++++ |.++++....+.|.+||. ++.............+.+|++.| ++.+.
T Consensus 176 g~~~~-~~~~----~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~----~g~l~ 244 (300)
T 2qc5_A 176 GKLEE-YPLP----TNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK----NSEIW 244 (300)
T ss_dssp CCEEE-EECS----STTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS----TTCEE
T ss_pred CcEEE-eeCC----CCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC----CCCEE
Confidence 54332 3322 11357899999998 877777667788999998 55544432111245688999987 55566
Q ss_pred EEe-CCCEEEEEeCCCCceeE-EecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 298 ITT-DNHIVRIWDPETGESMT-SIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 298 ~ss-~Dg~V~IWd~~tg~~l~-~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
++. .++.|.+||. ++.... .+......+.++++.+++.+. +++.. .|..|.
T Consensus 245 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~~-~i~~~~ 297 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVW-FALKC-KIGKLN 297 (300)
T ss_dssp EEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEE-EECSS-EEEEEE
T ss_pred EeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEE-EEccC-ceEEeC
Confidence 665 4689999998 455432 233334678899999987744 44444 565553
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=4.9e-10 Score=115.04 Aligned_cols=235 Identities=8% Similarity=-0.046 Sum_probs=158.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+.+|+++++|.. +++...++.|..|+.......+...........+.+.+++..+++...++.|.+|+..+......
T Consensus 57 ~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~ 135 (299)
T 2z2n_A 57 AKVMCLTISSDGEV-WFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYE 135 (299)
T ss_dssp CCEEEEEECTTSCE-EEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE
T ss_pred CceeeEEECCCCCE-EEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEec
Confidence 56789999999987 66666678899999864322232211222345566778887777776788999999876655554
Q ss_pred cCCC---ccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 143 IPRM---GRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~---~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
.+.. ...+++.+.. .++++.. .+.|++||. +++.... +..+...+.++++++++.++++...++.|.+||. +
T Consensus 136 ~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 212 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S 212 (299)
T ss_dssp CSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C
Confidence 4422 2356665543 5766654 578999999 7776543 3334457889999999998877767889999999 6
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
+... .+... .+...+.+|+++++ |..+++...++.|.+||. ++....+........+.++++ + ++.+.
T Consensus 213 g~~~-~~~~~----~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~----~g~l~ 280 (299)
T 2z2n_A 213 GEIT-EFKIP----TPNARPHAITAGAG-IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D----GETIW 280 (299)
T ss_dssp CCEE-EEECS----STTCCEEEEEECST-TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C----SSCEE
T ss_pred CcEE-EEECC----CCCCCceeEEECCC-CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-c----CCCEE
Confidence 6532 33222 12467899999999 886666557899999998 454333321112457899999 7 66777
Q ss_pred EEeCCCEEEEEeCCCC
Q 005325 298 ITTDNHIVRIWDPETG 313 (702)
Q Consensus 298 ~ss~Dg~V~IWd~~tg 313 (702)
++...+.|..++..++
T Consensus 281 v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 281 FAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEETTTEEEEEEEC--
T ss_pred EEecCCcEEEEEcCcc
Confidence 7765667777777654
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=4.7e-11 Score=123.51 Aligned_cols=217 Identities=9% Similarity=0.037 Sum_probs=152.2
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCC-ceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCccceEE
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDS-EIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGRDMAY 152 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~-~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~~l~~ 152 (702)
++. |++++.++.|.+||..+....+...... .....+.++|+|+.|+ +.++.
T Consensus 5 ~~~-lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~------------------------ 57 (276)
T 3no2_A 5 QHL-LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKG------------------------ 57 (276)
T ss_dssp CEE-EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSE------------------------
T ss_pred CcE-EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCC------------------------
Confidence 455 8899999999999997755433332221 1234445667776665 23333
Q ss_pred ecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-CCeEEEEEcCCCCEEEEEEc-CCeEEEEECCCCcceeEEecccCC
Q 005325 153 NSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-PALNVVSRSKLHGLIACGGE-DGAVECFDMRMRSSAARINAVAPA 230 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-~~V~~l~~sp~~~llasgs~-DG~V~iWD~~t~~~v~~l~~~~~~ 230 (702)
|+.||. +|+.+..+..+. ..+.++.+.|+++++++.+. ++.|..+|. +++.+..+......
T Consensus 58 ---------------V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~ 120 (276)
T 3no2_A 58 ---------------AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI 120 (276)
T ss_dssp ---------------EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC
T ss_pred ---------------EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC
Confidence 445666 677777776643 46888999999999999887 888888886 67777777643111
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE-EeCCCEEEEEe
Q 005325 231 GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI-TTDNHIVRIWD 309 (702)
Q Consensus 231 ~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~-ss~Dg~V~IWd 309 (702)
..+......+++.++ |.+|++.+.++.|.+||.. ++.+..... ...+.++.+.| ++.+++ ++.++.|..||
T Consensus 121 ~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~----~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 121 ERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLD----NGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp SSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECT----TSCEEEECBTTSEEEEEC
T ss_pred CcccccccCceECCC-CCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcC----CCCEEEEeCCCCeEEEEe
Confidence 111234556788999 9999999999999999988 888875554 23456677775 555555 45677899999
Q ss_pred CCCCceeEEecCCC------CceeEEEEEcCCCEEEEEe
Q 005325 310 PETGESMTSIEPTA------GKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 310 ~~tg~~l~~i~~h~------~~I~~v~~~p~~~~l~~a~ 342 (702)
..+|+.+..+..+. ..+..++..+++.++++..
T Consensus 193 ~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 193 LESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999999886422 2367788888888777764
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=2.5e-11 Score=123.47 Aligned_cols=243 Identities=7% Similarity=-0.065 Sum_probs=152.8
Q ss_pred ccCCCceeEEEECCCCCEEEE-EEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 59 LWFETATTKIRETPDGEFLIV-SGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 59 ~~~~~~v~~i~~SpDG~~lla-tGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
+.+.....+|+++++|.. ++ +.+.++.|.+|+...................+.+++++.
T Consensus 20 ~~~~~~p~~i~~~~~g~l-~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~------------------- 79 (270)
T 1rwi_B 20 IDFRLSPSGVAVDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT------------------- 79 (270)
T ss_dssp CSSCCCEEEEEECTTCCE-EEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-------------------
T ss_pred ccccCCccceEECCCCCE-EEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-------------------
Confidence 344436789999999985 66 556788999998655322211111100112222333433
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
++++..++.|++||................+.+++++|++.++++...++.|.+|+..+
T Consensus 80 ---------------------l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 80 ---------------------VYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp ---------------------EEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred ---------------------EEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence 33333334455555544332211112234688999999999888877889999998765
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
.......... ...+.+|+++|+ |.++++...++.|.+||............ ....+.+|+++| ++.++
T Consensus 139 ~~~~~~~~~~------~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~----~g~l~ 206 (270)
T 1rwi_B 139 KTQTVLPFTG------LNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDE----AGTVY 206 (270)
T ss_dssp CSCEECCCCS------CCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECT----TCCEE
T ss_pred ceeEeecccc------CCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECC----CCCEE
Confidence 4432211111 246789999999 88777777789999999887665442211 125678999987 45666
Q ss_pred EEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 298 ITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 298 ~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++. .++.|.+|+..+.........+...+.++++.|++.++++...++.|.+|..+.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 665 578999999876544332223335789999999998777778889999987654
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=1e-09 Score=118.58 Aligned_cols=244 Identities=11% Similarity=0.036 Sum_probs=157.8
Q ss_pred EEEECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecC-------CceEEEEEEcCCCCEEEEEEC--CCe
Q 005325 67 KIRETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLD-------SEIINFEVLADDYSKLAFLCA--DRS 128 (702)
Q Consensus 67 ~i~~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~-------~~vv~~~~ls~dg~~Las~s~--D~~ 128 (702)
.++|||||++++++.. .++.|.+||+.++...-..... ...-....++|||++|+++.. +..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 8999999999666643 3678999999875543322211 011235679999999988874 578
Q ss_pred EEEEecCCceEEEe-cCCCccceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEee-----cCCCC-eEEEEEcCCCCE
Q 005325 129 ISLHAKYGKHYSLR-IPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLN-----TQSPA-LNVVSRSKLHGL 200 (702)
Q Consensus 129 I~iw~~~g~~~~~~-i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~-----~h~~~-V~~l~~sp~~~l 200 (702)
|.+++ ........ ++.. .++...++... +++.+.++.+.+||+ +++.+.... ..... .....+.+++..
T Consensus 150 v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 226 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE
Confidence 99999 74433333 4432 23555566655 455667889999999 887764322 11111 123445666655
Q ss_pred EEEEEcCCeEEEEECCCCc--ceeEEecccC----CCCCCCCeEEEEEcCCCCCEEEEEeC----------CCeEEEEEc
Q 005325 201 IACGGEDGAVECFDMRMRS--SAARINAVAP----AGDADQEVTALEFDSNGGFLMGVGSS----------TGKVLIYDL 264 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~--~v~~l~~~~~----~~~~~~~Vtslafspd~g~~LasGs~----------DG~V~lwDl 264 (702)
++..+..+.|.+.|+.+.. .+..+..... ..........++++|+ +..|.++.. .+.|.++|+
T Consensus 227 ~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS-SDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC-CCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 4444577899999997653 2233322100 0001133455889999 777777553 368999999
Q ss_pred CCCeEEEEeeccCCCCeEEEEEeeccCCCC-CeEEEe-CCCEEEEEeCCCCceeEEe
Q 005325 265 RSSYPIRVKDHMFDSPIVDIKWHQSINTER-PKLITT-DNHIVRIWDPETGESMTSI 319 (702)
Q Consensus 265 rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss-~Dg~V~IWd~~tg~~l~~i 319 (702)
.+.+.+..... +....+|+|+| ++. .++++. .++.|.|||+.+++.+..+
T Consensus 306 ~t~~vv~~i~~--g~~p~~i~~s~---Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISL--GHDVDAISVAQ---DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCEEEEEEEC--CCCcCeEEECC---CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99998775444 34679999998 444 344444 4899999999999999884
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.41 E-value=8.6e-11 Score=124.45 Aligned_cols=254 Identities=10% Similarity=-0.018 Sum_probs=169.8
Q ss_pred cCCcEEEEEcCCceEEEee------ecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EEEecCCCccceEEec
Q 005325 83 YPPQVKVYELRQLSLKFER------HLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKH-YSLRIPRMGRDMAYNS 154 (702)
Q Consensus 83 ~dg~I~vwdl~~~~~~~~~------h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~~~i~~~~~~l~~~~ 154 (702)
.++.|.+||..+....... ..-......+.+. ++..+++...++.|.+|+.. +.. ..+........+++.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 4789999999875543211 0011112233343 33444555567999999988 333 2232233445777766
Q ss_pred CCCcEEEEe-cCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCCCCEEEEEE-cCCeEEEEECCCCcceeEEecc
Q 005325 155 WSCDLLCAA-SSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKLHGLIACGG-EDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 155 ~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~~~llasgs-~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.. .++++. .++.|.+||+.+++....+.... .....+++ ..+.++++.. .++.|.+||+.+++.+..+...
T Consensus 94 ~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 94 DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 65 788877 68899999999999887776543 14556777 3445555544 4899999999999988888765
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEEEeCC----------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGVGSST----------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~LasGs~D----------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
.....++++|+ |.+++++..+ +.|.+||..+++.........+.....|+|+| ++..+
T Consensus 172 -------~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~----d~~~l 239 (328)
T 3dsm_A 172 -------IQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG----TRDTL 239 (328)
T ss_dssp -------SCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT----TSCEE
T ss_pred -------CCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec----CCCEE
Confidence 45678999999 8776666554 79999999998876543332234679999997 44444
Q ss_pred EEeCCCEEEEEeCCCCceeEE--ecCCCCceeEEEEEcCCCEEEEEe-----CCCcEEEEEc
Q 005325 298 ITTDNHIVRIWDPETGESMTS--IEPTAGKINDVCVFKDSGLLLLAL-----DCSQIPSYFI 352 (702)
Q Consensus 298 ~ss~Dg~V~IWd~~tg~~l~~--i~~h~~~I~~v~~~p~~~~l~~a~-----~d~~I~~~~i 352 (702)
..++. .|.+||..+++.... +..+......+++.|+++.|++++ .++.|.+|..
T Consensus 240 yv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 240 YWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 44433 899999998876421 222235678899999666666665 5677777754
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=6.4e-11 Score=138.80 Aligned_cols=233 Identities=15% Similarity=0.038 Sum_probs=153.6
Q ss_pred CccCCCcceEEEEecC----CcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEE
Q 005325 2 ASRGGEGNAMKSTLIN----GVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFL 77 (702)
Q Consensus 2 ~s~dg~~~~l~~s~~~----~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~l 77 (702)
-||||..++..++..+ .|+||++.+| ..++. .+. ...+..++|||||+.
T Consensus 132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~---------------------~~~----~~~~~~~~wspDg~~- 184 (710)
T 2xdw_A 132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPD---------------------VLE----RVKFSCMAWTHDGKG- 184 (710)
T ss_dssp ECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEE---------------------EEE----EECSCCEEECTTSSE-
T ss_pred ECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcc---------------------ccc----CcccceEEEEeCCCE-
Confidence 3789986544444333 6899999888 22111 111 112567999999999
Q ss_pred EEEEecCCc----------------EEEEEcCCce----EEEeeecCCceEEEEEEcCCCCEEEEEEC-----CCeEEEE
Q 005325 78 IVSGIYPPQ----------------VKVYELRQLS----LKFERHLDSEIINFEVLADDYSKLAFLCA-----DRSISLH 132 (702)
Q Consensus 78 latGs~dg~----------------I~vwdl~~~~----~~~~~h~~~~vv~~~~ls~dg~~Las~s~-----D~~I~iw 132 (702)
|+.++.++. |.+|++.+.. +.+.............+|+|+++|++.+. +..|.+|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEE
Confidence 555555544 9999998732 33333212222455678999999988775 5688999
Q ss_pred ecCC---------ceEEEecCCCccceEEecCCCcEEEEecCC----CEEEEECCCCe--EEEEeecCCC--CeEEEEEc
Q 005325 133 AKYG---------KHYSLRIPRMGRDMAYNSWSCDLLCAASSP----ELYRINLEQGR--FLSSLNTQSP--ALNVVSRS 195 (702)
Q Consensus 133 ~~~g---------~~~~~~i~~~~~~l~~~~~s~~llv~s~d~----~V~vwdl~~g~--~~~~l~~h~~--~V~~l~~s 195 (702)
+..+ ....+..+.......+.+.+..+++.+..+ .|++||+.++. ....+..|.. .|..++|+
T Consensus 265 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred ECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence 8763 233332222222233455556676666543 49999998874 2244445544 68889999
Q ss_pred CCCCEEEEEEcCCe--EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe----CCCeEEEEEcCCCe
Q 005325 196 KLHGLIACGGEDGA--VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS----STGKVLIYDLRSSY 268 (702)
Q Consensus 196 p~~~llasgs~DG~--V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs----~DG~V~lwDlrs~~ 268 (702)
+.+.++++...++. |.+||+.+++.+..+..+ ...|.+++++|+ +..|+... ..+.|.+||+.+++
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~------~~~v~~~~~s~d-~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE------VGSVVGYSGQKK-DTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC------SSEEEEEECCTT-CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC------CceEEEEecCCC-CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88889999998885 566787677777777766 577899999998 76665432 34789999998877
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.39 E-value=8.7e-10 Score=125.51 Aligned_cols=272 Identities=13% Similarity=0.094 Sum_probs=188.7
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--C-c-eEEEecCCCccc
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--G-K-HYSLRIPRMGRD 149 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g-~-~~~~~i~~~~~~ 149 (702)
+.+++++...++.|.+||..+............ ...+.+++|++++++++.|+.|.+||+. . . ...+......+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~-p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC-ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 345578888899999999988554333222332 3467799999999999999999999984 2 2 222333334457
Q ss_pred eEEe----cCCCcEEEEec-CCCEEEEECCCCeEEEEeecC-----------CCCeEEEEEcCCCCE-EEEEEcCCeEEE
Q 005325 150 MAYN----SWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQ-----------SPALNVVSRSKLHGL-IACGGEDGAVEC 212 (702)
Q Consensus 150 l~~~----~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h-----------~~~V~~l~~sp~~~l-lasgs~DG~V~i 212 (702)
+.+. +....+++++. ++.|.++|..+.+.+..+... ...+..+..++++.. +++...+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 8888 35666776665 478999999999988876532 126788888888754 444556799999
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCeEEEEeec-c-CCCCeEEEE-Eee
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSYPIRVKDH-M-FDSPIVDIK-WHQ 288 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~~l~~~~h-~-~~~~I~sl~-fsp 288 (702)
+|......+...... .......+.|+|+ |.+|+++. .++.|.+||+.+++.+..... . ...|-..+. ++|
T Consensus 325 vd~~~~~~~~v~~i~-----~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 325 VDYTDLNNLKTTEIS-----AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp EETTCSSEEEEEEEE-----CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred EecCCCccceeeeee-----ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 999875433222221 0256778999999 88877655 678999999999987663322 1 011112233 465
Q ss_pred ccCCCCCeEEEe--CCCEEEEEeCCC-------CceeEEecCCCCceeEEEEEcCCCEEEEEeC-------CCcEEEEEc
Q 005325 289 SINTERPKLITT--DNHIVRIWDPET-------GESMTSIEPTAGKINDVCVFKDSGLLLLALD-------CSQIPSYFI 352 (702)
Q Consensus 289 ~~~~~~~ll~ss--~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~-------d~~I~~~~i 352 (702)
+++.+.+++ .++.|.|+|..+ .+.+.++......-..|..+|++..+++.+. ...|.+|.+
T Consensus 399 ---~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 399 ---TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp ---TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ---CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 345566555 478999999988 6788888764333345778999999999874 358999998
Q ss_pred CCC
Q 005325 353 PDL 355 (702)
Q Consensus 353 p~l 355 (702)
..+
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 876
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.38 E-value=9e-11 Score=124.14 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=142.5
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc--e-EEEe---------eecCCceEEEEEEcC-CCCEEEEEE-CCCe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL--S-LKFE---------RHLDSEIINFEVLAD-DYSKLAFLC-ADRS 128 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~--~-~~~~---------~h~~~~vv~~~~ls~-dg~~Las~s-~D~~ 128 (702)
.....|+++|+|++ +++...++.|.+|+.... . ..+. .+.. ....+.+++ ++..+++.+ .++.
T Consensus 91 ~~p~gia~d~~g~l-~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~--~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 91 YLPHGLSIDTDGNY-WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC--QPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp SSEEEEEECTTSCE-EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS--SEEEEEECTTTCCEEEEECSSCCE
T ss_pred CCceEEEECCCCCE-EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC--CCcEEEEeCCCCeEEEEeCCCCCe
Confidence 35678999999995 888888999999998753 2 2231 1111 244566777 777777776 6899
Q ss_pred EEEEecCCceEEEec-CC-----------CccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEee--cCCCCeEEEE
Q 005325 129 ISLHAKYGKHYSLRI-PR-----------MGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLN--TQSPALNVVS 193 (702)
Q Consensus 129 I~iw~~~g~~~~~~i-~~-----------~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~ 193 (702)
|.+|+..|....... .. ....+++.+....++++.. ++.|.+|++.+|+++..+. .+...+.+++
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 999998776544321 11 1347888887677777765 4569999999999998874 3556788999
Q ss_pred EcCCCCEEEEE-------EcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 005325 194 RSKLHGLIACG-------GEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS 266 (702)
Q Consensus 194 ~sp~~~llasg-------s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs 266 (702)
++| +.++++. +.+..|.+||+.+++.+..+... ..+...+..|+++|+ |.++++...++.|++|++..
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV---RKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---SSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---CCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCc
Confidence 999 4333333 33458999999999988887422 122467899999999 88888888899999999753
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=8.9e-11 Score=137.29 Aligned_cols=269 Identities=6% Similarity=-0.057 Sum_probs=170.8
Q ss_pred CCCCCEEEEEEecCC--c--EEEEEcCCc--eEEEeeec----CCceEEEEEEcCCCCEEEEEEC-----CCeEEEEecC
Q 005325 71 TPDGEFLIVSGIYPP--Q--VKVYELRQL--SLKFERHL----DSEIINFEVLADDYSKLAFLCA-----DRSISLHAKY 135 (702)
Q Consensus 71 SpDG~~llatGs~dg--~--I~vwdl~~~--~~~~~~h~----~~~vv~~~~ls~dg~~Las~s~-----D~~I~iw~~~ 135 (702)
+|||.+++.+-...+ . |.+.+.... ...+.... ....+....+||||++||.+.. +..|++|++.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 489999555544332 3 344443331 12221110 0124667789999999985433 4689999998
Q ss_pred C-ceE-EEecCCCc-cceEEecCCCcEEEEecCCC-------------EEEEECCCCe----EEEEeecCCCCeEEEEEc
Q 005325 136 G-KHY-SLRIPRMG-RDMAYNSWSCDLLCAASSPE-------------LYRINLEQGR----FLSSLNTQSPALNVVSRS 195 (702)
Q Consensus 136 g-~~~-~~~i~~~~-~~l~~~~~s~~llv~s~d~~-------------V~vwdl~~g~----~~~~l~~h~~~V~~l~~s 195 (702)
+ ... ...++... ..+.|.+.+..|+.++.+.. |++|++.++. .+.....|...+.++.|+
T Consensus 156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 4 332 11233322 47888888888888887665 9999999876 444444455678999999
Q ss_pred CCCCEEEEEEcCC----eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCCe
Q 005325 196 KLHGLIACGGEDG----AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS---STGKVLIYDLRSSY 268 (702)
Q Consensus 196 p~~~llasgs~DG----~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs---~DG~V~lwDlrs~~ 268 (702)
|++++|++++.++ .|.+||..++. ...+..+ ...+....| ++ |.+++++. .++.|.+||+.++.
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~------~~~~~~~~~-~~-g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG------VGAKYEVHA-WK-DRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC------SSCCEEEEE-ET-TEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC------CCceEEEEe-cC-CcEEEEECCCCCCCEEEEEeCCCCC
Confidence 9998888877666 67777665554 4444444 345666666 55 45444433 25899999998765
Q ss_pred E---EEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC-CCceeEEecCC-CCceeEEEEEcCCCEEEEEe
Q 005325 269 P---IRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE-TGESMTSIEPT-AGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 269 ~---l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~-tg~~l~~i~~h-~~~I~~v~~~p~~~~l~~a~ 342 (702)
+ ..+..+.....|..++|+ ++.++++. .++..+||.+. +|..+..+..+ .+.|..++++|++..++...
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-----~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-----GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-----TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEE-----CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 3 444444224568888887 44555554 68888888665 46666777654 66788888999887666443
Q ss_pred CC----CcEEEEEcC
Q 005325 343 DC----SQIPSYFIP 353 (702)
Q Consensus 343 ~d----~~I~~~~ip 353 (702)
.+ +.|+.|.+.
T Consensus 382 ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVS 396 (695)
T ss_dssp EETTEEEEEEEEETT
T ss_pred cCCCCCCEEEEEECC
Confidence 32 456666553
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.36 E-value=5.5e-11 Score=139.05 Aligned_cols=242 Identities=10% Similarity=-0.060 Sum_probs=156.5
Q ss_pred CCceeEEEECCCCCEEEEEEec----CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCe---------
Q 005325 62 ETATTKIRETPDGEFLIVSGIY----PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRS--------- 128 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~----dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~--------- 128 (702)
...+..++|||||++|+++.+. +..|++||+.+.......+....-.....++||++.|++++.|..
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 3468899999999995554443 357999999885432011111100135678999999999999876
Q ss_pred ----EEEEecCCce----EEEecCC---CccceEEecCCCcEEEEecCC----CEEEEECCCCeEEEEeecCCCCeEEEE
Q 005325 129 ----ISLHAKYGKH----YSLRIPR---MGRDMAYNSWSCDLLCAASSP----ELYRINLEQGRFLSSLNTQSPALNVVS 193 (702)
Q Consensus 129 ----I~iw~~~g~~----~~~~i~~---~~~~l~~~~~s~~llv~s~d~----~V~vwdl~~g~~~~~l~~h~~~V~~l~ 193 (702)
|.+|++.+.. .....+. ....+.+.+.+..|++++.++ .|++|+..++.. ..+..+...+....
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVH 278 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEE
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEE
Confidence 9999987422 2222222 223667777777777777655 688888776654 34555555666666
Q ss_pred EcCCCCEEEEEE---cCCeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CC
Q 005325 194 RSKLHGLIACGG---EDGAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR-SS 267 (702)
Q Consensus 194 ~sp~~~llasgs---~DG~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr-s~ 267 (702)
+ +++.++++.. .++.|.+||+.++.. ...+..+. ....|..++|+ + +.++++...++..+||.+. .+
T Consensus 279 ~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 279 A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED----SSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC----SSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTC
T ss_pred e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC----CCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCC
Confidence 6 4555444443 258999999987653 23444331 13468889998 5 7888899999998888665 34
Q ss_pred eEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCCce
Q 005325 268 YPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETGES 315 (702)
Q Consensus 268 ~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg~~ 315 (702)
..+. +..+ ....|..+.++| ++..++++. ..++|.+||+.+++.
T Consensus 352 ~~~~~l~~~-~~~~v~~~~~s~---d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 352 KPVRTVQLP-GVGAASNLMGLE---DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CEEEECCCS-SSSEECCCBSCT---TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeeEEecCC-CCeEEEEeecCC---CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4433 2222 134577778886 344455433 257899999998874
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=1e-09 Score=113.89 Aligned_cols=232 Identities=12% Similarity=0.101 Sum_probs=157.7
Q ss_pred EEEEcCCCCEEEE-------EECCCeEEEEecC-CceEEEecC------CCccceEEecCCCcEEEEecCCCEEEEECCC
Q 005325 110 FEVLADDYSKLAF-------LCADRSISLHAKY-GKHYSLRIP------RMGRDMAYNSWSCDLLCAASSPELYRINLEQ 175 (702)
Q Consensus 110 ~~~ls~dg~~Las-------~s~D~~I~iw~~~-g~~~~~~i~------~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~ 175 (702)
.+.+++++..+++ ...++.|.+|+.. +....+..+ .....+++.+....+++++..+.|++||..
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~- 100 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD- 100 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-
Confidence 3445678777766 5678899999865 554443321 223356665554678888877789999998
Q ss_pred CeEEEE-eec----CCCCeEEEEEcCCCCEEEEEEcC---------------CeEEEEECCCCcceeEEecccCCCCCCC
Q 005325 176 GRFLSS-LNT----QSPALNVVSRSKLHGLIACGGED---------------GAVECFDMRMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 176 g~~~~~-l~~----h~~~V~~l~~sp~~~llasgs~D---------------G~V~iWD~~t~~~v~~l~~~~~~~~~~~ 235 (702)
++.... ... +...+++++++|+++++++...+ +.|..||.. ++........ .
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------~ 172 (314)
T 1pjx_A 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------Q 172 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------S
T ss_pred CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------C
Confidence 776543 221 12358899999999988877665 578888876 5443333222 4
Q ss_pred CeEEEEEc----CCCCCEEEEE-eCCCeEEEEEcC-CCeEEE---Eeecc-CC-CCeEEEEEeeccCCCCCeEEEe-CCC
Q 005325 236 EVTALEFD----SNGGFLMGVG-SSTGKVLIYDLR-SSYPIR---VKDHM-FD-SPIVDIKWHQSINTERPKLITT-DNH 303 (702)
Q Consensus 236 ~Vtslafs----pd~g~~LasG-s~DG~V~lwDlr-s~~~l~---~~~h~-~~-~~I~sl~fsp~~~~~~~ll~ss-~Dg 303 (702)
....++|+ |+ +..|+++ +.++.|.+||+. .+.... +.... .. ..+..|++++ ++.+.++. .++
T Consensus 173 ~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~----~G~l~v~~~~~~ 247 (314)
T 1pjx_A 173 FPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE----DNNLLVANWGSS 247 (314)
T ss_dssp SEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT----TCCEEEEEETTT
T ss_pred CcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC----CCCEEEEEcCCC
Confidence 57899999 99 8665554 568999999987 444211 11111 11 4578899986 55666654 688
Q ss_pred EEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEE-eCCCcEEEEEcCCC
Q 005325 304 IVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLA-LDCSQIPSYFIPDL 355 (702)
Q Consensus 304 ~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a-~~d~~I~~~~ip~l 355 (702)
.|.+||..+++.+..+..+...+.+++|.|++..|+++ ..++.|..|.+..-
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99999999888887777766789999999999855555 45678888876543
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=6.3e-09 Score=112.35 Aligned_cols=272 Identities=14% Similarity=0.021 Sum_probs=179.7
Q ss_pred EECCCCCEEEEEEe-cCC---cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE----------CCCeEEEEec
Q 005325 69 RETPDGEFLIVSGI-YPP---QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC----------ADRSISLHAK 134 (702)
Q Consensus 69 ~~SpDG~~llatGs-~dg---~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s----------~D~~I~iw~~ 134 (702)
...|++++++++-. ... .|.+||..+..+.-.-...... -+.++||+++++.+. .++.|.+|+.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34588888655543 222 8899999886554333333322 667999999998876 3678999998
Q ss_pred CCce--EEEecC--------CCccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCC-CE
Q 005325 135 YGKH--YSLRIP--------RMGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLH-GL 200 (702)
Q Consensus 135 ~g~~--~~~~i~--------~~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~-~l 200 (702)
.... ..+.++ .....+.+.+....|+++.. ++.|.++| .+++.+.. +.... |+.+.|.+ ..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCce
Confidence 6322 223333 12347888888888998874 47799999 99998877 54322 34555665 56
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE--Eeecc-
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPAGDADQE-VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR--VKDHM- 276 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~-Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~--~~~h~- 276 (702)
+++.+.||.+.+||. +++.+........... ..+ .....|.++ +..++..+..+.|.+.|+.+..... .....
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA-AQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccC-CcceeecceeEec-CCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 677788999999999 8876644331100000 122 234567777 5554444578899999997653221 11100
Q ss_pred --------CCCCeEEEEEeeccCCCCCeEEEeC----------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC-E
Q 005325 277 --------FDSPIVDIKWHQSINTERPKLITTD----------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG-L 337 (702)
Q Consensus 277 --------~~~~I~sl~fsp~~~~~~~ll~ss~----------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~-~ 337 (702)
.......+.++| ++..++++.. .+.|.++|+.+++.+..+.. .....+++|+|++. +
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~---d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPD 332 (373)
T ss_pred CcccccceecCceEeEEECC---CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeE
Confidence 012234477787 4555555542 35899999999999999976 66789999999999 7
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 005325 338 LLLAL-DCSQIPSYFIPD 354 (702)
Q Consensus 338 l~~a~-~d~~I~~~~ip~ 354 (702)
+++++ .++.|.+|....
T Consensus 333 l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEEEcCCCCeEEEEECCC
Confidence 88877 488999987654
No 198
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=3.5e-09 Score=113.64 Aligned_cols=257 Identities=11% Similarity=0.131 Sum_probs=167.4
Q ss_pred CCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCCc---
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRMG--- 147 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~~--- 147 (702)
++.. ++.++.++.|..+|..+....+.......+.....+. +..++.++.++.|..++.. |... ....+...
T Consensus 102 ~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGH-VYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 3445 5667889999999998866655544333332222222 2577778889999999875 4332 22222111
Q ss_pred ---cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCC-------eEEEEEcC--CCCEEEEEEcCCeEEEEEC
Q 005325 148 ---RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPA-------LNVVSRSK--LHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 148 ---~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~-------V~~l~~sp--~~~llasgs~DG~V~iWD~ 215 (702)
...... ...+++++.++.|+.+|+.+|+.+..+...... +..+...| .+..+++++.++.|..+|+
T Consensus 179 ~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 179 RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 111111 345777777889999999999988776543210 00011111 2467888888999999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
.+++.+...... ...++... +..|++++.+|.|..||..+++.+..........+...... ++.
T Consensus 257 ~tG~~~w~~~~~--------~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-----~~~ 320 (376)
T 3q7m_A 257 RSGQIMWKRELG--------SVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-----NGN 320 (376)
T ss_dssp TTCCEEEEECCC--------CEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-----TTE
T ss_pred CCCcEEeeccCC--------CCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-----CCE
Confidence 999887766543 34555554 56788888999999999999998775442112233333343 567
Q ss_pred eEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 296 KLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
+++++.++.|.+||..+|+.+..+......+...... .++.|++++.++.++.|.
T Consensus 321 l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 321 LVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 8888889999999999999988877644444332222 256788899999988774
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.27 E-value=2.4e-09 Score=110.64 Aligned_cols=244 Identities=14% Similarity=0.054 Sum_probs=162.5
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCC--CceeEEEECCCCCEEEEEEecCCcE
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFE--TATTKIRETPDGEFLIVSGIYPPQV 87 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~--~~v~~i~~SpDG~~llatGs~dg~I 87 (702)
++..+.++.|.+|+...| +. +..+..+ ..+.++.++|+|++ ++ +.++.|
T Consensus 8 lv~~~~~~~v~~~d~~tG-~~-------------------------~w~~~~~~~~~~~~~~~~pdG~i-lv--s~~~~V 58 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTK-EI-------------------------VWEYPLEKGWECNSVAATKAGEI-LF--SYSKGA 58 (276)
T ss_dssp EEECTTCSEEEEEETTTT-EE-------------------------EEEEECCTTCCCCEEEECTTSCE-EE--ECBSEE
T ss_pred EEeeCCCCEEEEEECCCC-eE-------------------------EEEeCCCccCCCcCeEECCCCCE-EE--eCCCCE
Confidence 455567788999999777 22 2223222 35789999999998 55 457889
Q ss_pred EEEEcCCceEEEeeecC-CceEEEEEEcCCCCEEEEEEC-CCeEEEEecCCceEE-EecCC-------CccceEEecCCC
Q 005325 88 KVYELRQLSLKFERHLD-SEIINFEVLADDYSKLAFLCA-DRSISLHAKYGKHYS-LRIPR-------MGRDMAYNSWSC 157 (702)
Q Consensus 88 ~vwdl~~~~~~~~~h~~-~~vv~~~~ls~dg~~Las~s~-D~~I~iw~~~g~~~~-~~i~~-------~~~~l~~~~~s~ 157 (702)
.+||. +.......... ...+..+...++|..+++.+. ++.|..++..|.... +.+.. ..+.+...+...
T Consensus 59 ~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 59 KMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 99998 43333332221 122445567789999998887 777887887775432 22221 122445555555
Q ss_pred cEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 158 DLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
.+++...++.|+.||.. |+.+..+..+. .+.++.+.++++++++++.++.|..||+.+++.+..+.........-..+
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 46666678889999998 99999987754 45677888999999999988999999999999999987541101112348
Q ss_pred EEEEEcCCCCCEEEEEeCC--------CeEEEEEc-CCCeEEEE-eeccCCCCeEEEEE
Q 005325 238 TALEFDSNGGFLMGVGSST--------GKVLIYDL-RSSYPIRV-KDHMFDSPIVDIKW 286 (702)
Q Consensus 238 tslafspd~g~~LasGs~D--------G~V~lwDl-rs~~~l~~-~~h~~~~~I~sl~f 286 (702)
++++..++ |.++++.... +..+++.+ ++++.++. ..+..-..|.++|.
T Consensus 216 ~~~~~~~~-G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~ 273 (276)
T 3no2_A 216 AQLFPLQN-GGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTICP 273 (276)
T ss_dssp EEEEECTT-SCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEEE
T ss_pred ccceEcCC-CCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeeee
Confidence 89999999 8888776421 24467777 46776663 33322344555543
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.27 E-value=1.1e-09 Score=119.73 Aligned_cols=247 Identities=15% Similarity=0.137 Sum_probs=157.8
Q ss_pred EEEECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecC-------CceEEEEEEcCCCCEEEEEEC--CCe
Q 005325 67 KIRETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLD-------SEIINFEVLADDYSKLAFLCA--DRS 128 (702)
Q Consensus 67 ~i~~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~-------~~vv~~~~ls~dg~~Las~s~--D~~ 128 (702)
.|++||||++++++.. .++.|.++|+.++...-.-... ..--..+.+++|+++|+.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 7999999999666643 4678999999986553222111 001124568999999988874 578
Q ss_pred EEEEecCCceEEEecCCCccceEEecCC-CcEEEEecCCCEEEEECCCCeEEEE----eecCCCCe-EEEEEcCCCCEEE
Q 005325 129 ISLHAKYGKHYSLRIPRMGRDMAYNSWS-CDLLCAASSPELYRINLEQGRFLSS----LNTQSPAL-NVVSRSKLHGLIA 202 (702)
Q Consensus 129 I~iw~~~g~~~~~~i~~~~~~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~~~~----l~~h~~~V-~~l~~sp~~~lla 202 (702)
|.+.|.......-.++-.+. ....+.. ..+++.+.++.+.+.++.+++.... +......+ ..+.+.+++..++
T Consensus 202 VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE
T ss_pred EEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE
Confidence 99999885444434443222 2223332 3356667788888888877665432 21111121 2356788887777
Q ss_pred EEEcCCeEEEEECCCCcc--eeEEecccC----CCCCCCCeEEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC
Q 005325 203 CGGEDGAVECFDMRMRSS--AARINAVAP----AGDADQEVTALEFDSNGGFLMGVGSS----------TGKVLIYDLRS 266 (702)
Q Consensus 203 sgs~DG~V~iWD~~t~~~--v~~l~~~~~----~~~~~~~Vtslafspd~g~~LasGs~----------DG~V~lwDlrs 266 (702)
..+..+.|.+.|+..... +..+..... ..........++|+|+ +..+++... ++.|.++|+.+
T Consensus 281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d-g~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ-SDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG-GTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC-CCEEEEEecccccccccCCCCEEEEEECCC
Confidence 777889999999975442 111111000 0000122234789999 777776543 35799999999
Q ss_pred CeEEEEeeccCCCCeEEEEEeeccCCCC-CeEEEe-CCCEEEEEeCCCCceeEEec
Q 005325 267 SYPIRVKDHMFDSPIVDIKWHQSINTER-PKLITT-DNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 267 ~~~l~~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss-~Dg~V~IWd~~tg~~l~~i~ 320 (702)
.+.+....- +.....|.|+| ++. .++++. .++.|.|+|+.+++.+.++.
T Consensus 360 ~kvv~~I~v--g~~P~gia~sp---Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 360 GERINKIEL--GHEIDSINVSQ---DAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp CCEEEEEEE--EEEECEEEECC---SSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CeEEEEEEC--CCCcCeEEEcc---CCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 998874433 23478999998 444 455555 49999999999999999983
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.8e-09 Score=112.64 Aligned_cols=234 Identities=9% Similarity=-0.033 Sum_probs=150.5
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI 143 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i 143 (702)
....+.|+|+|++|++++...+.|..|+.......+..+ ......+.+++++..+++...++.|.+|+..+....+
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~--~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~-- 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA--TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLL-- 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES--CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE--
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC--CCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEE--
Confidence 346789999999878999999999999985432233332 2235556677777655444444566665543321111
Q ss_pred CCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEE----EEc-------------
Q 005325 144 PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIAC----GGE------------- 206 (702)
Q Consensus 144 ~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llas----gs~------------- 206 (702)
.+...+ .....++++++.|++.++++ |+.
T Consensus 122 ---------------------------~~~~~~-------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 122 ---------------------------VGRYAG-------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ---------------------------ECEETT-------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ---------------------------EeccCC-------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 000000 01134678999999998886 432
Q ss_pred CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC------CeEEEEEcCCCeEEE--EeeccCC
Q 005325 207 DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST------GKVLIYDLRSSYPIR--VKDHMFD 278 (702)
Q Consensus 207 DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D------G~V~lwDlrs~~~l~--~~~h~~~ 278 (702)
.+.|..||..+++..... . ......++|+|+ +..|+++... +.|.+||+....... .......
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~------~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 238 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--D------LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD 238 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--E------ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCeEEEEcCCCCcEEEEe--c------CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence 256888888776644333 3 246788999999 8888777665 789999998654211 1111112
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.....|++.+ ++.+.+++.+ .|.+|+. +|+.+..+..+. .+.+++|.|+++.|++++.+ .+..+.+
T Consensus 239 ~~pdgi~~d~----~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 239 GLPDGFCVDR----GGWLWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp SCCCSEEECT----TSCEEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred CCCCeEEECC----CCCEEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence 3346788886 5666666644 5999998 578888887634 68899999998888888875 4554444
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.27 E-value=2.9e-09 Score=114.62 Aligned_cols=274 Identities=16% Similarity=0.088 Sum_probs=185.9
Q ss_pred EEECCCCCEEEEEEec----CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE----------CCCeEEEEe
Q 005325 68 IRETPDGEFLIVSGIY----PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC----------ADRSISLHA 133 (702)
Q Consensus 68 i~~SpDG~~llatGs~----dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s----------~D~~I~iw~ 133 (702)
+...||+..++++-.. ++.|.++|..+....-.-...... . +.++||+++++.+. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3457999997776654 689999999986664444444444 4 78999999887765 367899999
Q ss_pred cCCce--EEEecCC--------CccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CE
Q 005325 134 KYGKH--YSLRIPR--------MGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GL 200 (702)
Q Consensus 134 ~~g~~--~~~~i~~--------~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~l 200 (702)
..... ..+.++. ....+.+.+.+..++++.. ++.|.++|+.+++.+.++.... |..+.|.+ ..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~ 191 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDT 191 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCce
Confidence 88433 3344442 3457899999999999874 5789999999999999885432 22233444 67
Q ss_pred EEEEEcCCeEEEEECCC-CcceeEEecccCCCCCCCCeE-EEEEc-CCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec--
Q 005325 201 IACGGEDGAVECFDMRM-RSSAARINAVAPAGDADQEVT-ALEFD-SNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-- 275 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vt-slafs-pd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-- 275 (702)
+++.+.||.+.+.++.+ ++.+...... ......++. ...|. ++ |.+++ .+.+|.|.++|+.+..+......
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~--~~~~~~~~~~~~~~~~~d-G~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~ 267 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEV--FHPEDEFLINHPAYSQKA-GRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA 267 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCC--CSCTTSCBCSCCEEETTT-TEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecce--eccccccccccceeEcCC-CcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence 77888999999999986 5543222111 001112222 24665 56 65544 56689999999987653221100
Q ss_pred ---------cCCCCeEEEEEeeccCCCCCeEEEeC----------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC
Q 005325 276 ---------MFDSPIVDIKWHQSINTERPKLITTD----------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG 336 (702)
Q Consensus 276 ---------~~~~~I~sl~fsp~~~~~~~ll~ss~----------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~ 336 (702)
-....+..++++| +++.+.++.. .+.|.+.|+.+++.+..+.. ...++.|++++++.
T Consensus 268 ~~~~~~~~g~~p~g~q~~a~~~---~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~ 343 (386)
T 3sjl_D 268 LTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEK 343 (386)
T ss_dssp SCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSS
T ss_pred cccccccccccCCCcceeeECC---CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCC
Confidence 0011234567776 4555555432 36799999999999999988 67899999999986
Q ss_pred -EEEEEeC-CCcEEEEEcCCC
Q 005325 337 -LLLLALD-CSQIPSYFIPDL 355 (702)
Q Consensus 337 -~l~~a~~-d~~I~~~~ip~l 355 (702)
+|++++. ++.|.+|.....
T Consensus 344 ~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp CEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEEcCCCCeEEEEECCCC
Confidence 7777654 788998876543
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=4.1e-09 Score=109.60 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=143.3
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP 144 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~ 144 (702)
.-+..|+|++..|+++....+.|..||..+........ .. .+..+.+++++..+++ . +.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~-~~~~i~~~~dG~l~v~-~-~~----------------- 73 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-DA-PVSSVALRQSGGYVAT-I-GT----------------- 73 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-SS-CEEEEEEBTTSSEEEE-E-TT-----------------
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-CC-ceEEEEECCCCCEEEE-E-CC-----------------
Confidence 34788999888878888889999999988744322222 22 2445556666663332 2 23
Q ss_pred CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCCCEEEEEEcC-----------Ce
Q 005325 145 RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLHGLIACGGED-----------GA 209 (702)
Q Consensus 145 ~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~~llasgs~D-----------G~ 209 (702)
.|++||+.++++...... ....++.++++|+++++++.... +.
T Consensus 74 ----------------------~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 74 ----------------------KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp ----------------------EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred ----------------------eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 344456555544322211 12357899999999977765332 34
Q ss_pred EEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEc--CCCeEEE---Eeec-cCCCCeE
Q 005325 210 VECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLM-GVGSSTGKVLIYDL--RSSYPIR---VKDH-MFDSPIV 282 (702)
Q Consensus 210 V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~L-asGs~DG~V~lwDl--rs~~~l~---~~~h-~~~~~I~ 282 (702)
|..+|.. +. +..+... ......++|+|+ +..| ++.+.++.|.+||+ .++.... +... .....+.
T Consensus 132 l~~~d~~-g~-~~~~~~~------~~~pngi~~spd-g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~ 202 (297)
T 3g4e_A 132 LYSLFPD-HH-VKKYFDQ------VDISNGLDWSLD-HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD 202 (297)
T ss_dssp EEEECTT-SC-EEEEEEE------ESBEEEEEECTT-SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred EEEEECC-CC-EEEEeec------cccccceEEcCC-CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence 4444443 33 2222222 245689999999 8766 45566899999998 4454321 1111 0124568
Q ss_pred EEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEE-cCCCEEEEEeCC
Q 005325 283 DIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVF-KDSGLLLLALDC 344 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~-p~~~~l~~a~~d 344 (702)
.+++.+ ++.+.++. ..+.|.+||..+|+.+..+..+...+++++|. |+...|++++..
T Consensus 203 g~~~d~----~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 203 GMCIDA----EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEBT----TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred eeEECC----CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 899986 45666555 67889999999999999998866789999999 888877776653
No 204
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.26 E-value=2.4e-10 Score=120.13 Aligned_cols=228 Identities=11% Similarity=0.088 Sum_probs=149.6
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCceEEEec-CCCccceEEecCCCcEEE-EecCCCEEEEECCCCeEEEEeecCCCCe
Q 005325 112 VLADDYSKLAFLCADRSISLHAKYGKHYSLRI-PRMGRDMAYNSWSCDLLC-AASSPELYRINLEQGRFLSSLNTQSPAL 189 (702)
Q Consensus 112 ~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i-~~~~~~l~~~~~s~~llv-~s~d~~V~vwdl~~g~~~~~l~~h~~~V 189 (702)
.+++++..++..+.++.+..|. ......+.. .....++++.+... +++ +..++.|++||+.++++...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTIT-AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEE-CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred eecCCccceeEEeecccCcccc-cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 3455555555556677777772 212212211 12233677765544 665 4567789999999988766554566789
Q ss_pred EEEEEcCCCCEEEEEEcC----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC------CCeE
Q 005325 190 NVVSRSKLHGLIACGGED----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS------TGKV 259 (702)
Q Consensus 190 ~~l~~sp~~~llasgs~D----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~------DG~V 259 (702)
.+++++|++.+++++..+ +.|.+||+.++.....+... .....+.+++++|+ |.++++... .+.|
T Consensus 90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l 164 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----STAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGV 164 (333)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----SSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEE
T ss_pred ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----ccCCcccceEECCC-CCEEEEeccccccCCCceE
Confidence 999999999988887766 68999999877654333311 12467999999999 877666543 3567
Q ss_pred EEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC-CceeEE--------ecCCCCceeEE
Q 005325 260 LIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET-GESMTS--------IEPTAGKINDV 329 (702)
Q Consensus 260 ~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t-g~~l~~--------i~~h~~~I~~v 329 (702)
..||..+++...+..+ ...+..++|+| ++..++++. .++.|.+||+.+ +..+.. +.. ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~i~~~~---dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 165 YYVSPDFRTVTPIIQN--ISVANGIALST---DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp EEECTTSCCEEEEEEE--ESSEEEEEECT---TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred EEEeCCCCEEEEeecC--CCcccceEECC---CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 7777666555444333 23578999997 333354544 578999999964 443321 222 2467889
Q ss_pred EEEcCCCEEEEEeCCCcEEEEEc
Q 005325 330 CVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 330 ~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
++.+++.++++...++.|.+|..
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEECC
Confidence 99999887777767788888753
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=1.3e-09 Score=128.33 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=153.4
Q ss_pred eEEEEEEcCCCCEEEEEECC-----CeEEEEecCC-ceEEEecCCCc-cceEEecCCCcEEEEecCCC------------
Q 005325 107 IINFEVLADDYSKLAFLCAD-----RSISLHAKYG-KHYSLRIPRMG-RDMAYNSWSCDLLCAASSPE------------ 167 (702)
Q Consensus 107 vv~~~~ls~dg~~Las~s~D-----~~I~iw~~~g-~~~~~~i~~~~-~~l~~~~~s~~llv~s~d~~------------ 167 (702)
.+....+||||++|++++.+ ..|.+|++.+ ......++... ..+.|.+. ..++.++.+..
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 45667889999999887764 4699999984 44333222221 36788888 77777766543
Q ss_pred --EEEEECCCCe----EEEEeecCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEECCCC--cceeEEecccCCCCCC
Q 005325 168 --LYRINLEQGR----FLSSLNTQSPALNVVSRSKLHGLIACGGEDG-----AVECFDMRMR--SSAARINAVAPAGDAD 234 (702)
Q Consensus 168 --V~vwdl~~g~----~~~~l~~h~~~V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~--~~v~~l~~~~~~~~~~ 234 (702)
|++|++.++. .+.....+...+..+.|+|++++|+..+.++ .|.+||+.++ .+...+..+ .
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~ 316 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD------L 316 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS------S
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC------C
Confidence 9999998775 3322223334588999999999888877654 8999999876 324555544 2
Q ss_pred CCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCC--eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEE
Q 005325 235 QEVTALEFDSNGGFLMGVGSS----TGKVLIYDLRSS--YPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRI 307 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~----DG~V~lwDlrs~--~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~I 307 (702)
..+.... +|+ |..|+..+. ++.|.+||+.++ ....+..+. ...|..+.|+ ++.++++. .++..+|
T Consensus 317 ~~~~~~~-~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-----~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 317 KAQWDFV-DGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-----GNRLFASYIHDAKSQV 388 (741)
T ss_dssp SSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-----BTEEEEEEEETTEEEE
T ss_pred CceEEEE-ecc-CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-----CCEEEEEEEECCEEEE
Confidence 3444443 478 888887775 455999999874 444444442 3456677776 44555554 6887777
Q ss_pred EeCC-CCceeEEecC-CCCceeEEEEEcCCCEEEEE-eC---CCcEEEEEcC
Q 005325 308 WDPE-TGESMTSIEP-TAGKINDVCVFKDSGLLLLA-LD---CSQIPSYFIP 353 (702)
Q Consensus 308 Wd~~-tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a-~~---d~~I~~~~ip 353 (702)
|.+. +|..+..+.. +.+.|..++++|++..|+.. +. .+.|+.|.+.
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 7654 4666666764 36778899999988755533 32 2456666543
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.23 E-value=2.5e-08 Score=102.18 Aligned_cols=232 Identities=7% Similarity=-0.056 Sum_probs=154.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+.+|+++++|.. +++...++.|.+||.......+...........+.+.+++..+++...++.|..++..+....+.
T Consensus 62 ~~~~~i~~~~~g~l-~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 140 (300)
T 2qc5_A 62 AKVMCLIVSSLGDI-WFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYD 140 (300)
T ss_dssp CCEEEEEECTTSCE-EEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CcceeEEECCCCCE-EEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEcc
Confidence 46788999999986 56666678899999874322232211122345556777888777766688999998887665555
Q ss_pred cCCC---ccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEE-eecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 005325 143 IPRM---GRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSS-LNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRM 217 (702)
Q Consensus 143 i~~~---~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~-l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t 217 (702)
++.. ...+++.+.. .++++.. ++.|++||. ++..... +..+...+.++++.+++.++++....+.|.+||. +
T Consensus 141 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 217 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T 217 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C
Confidence 5422 2356666544 4777765 567999998 6665542 2234457899999999988887777788999998 4
Q ss_pred CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeE
Q 005325 218 RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKL 297 (702)
Q Consensus 218 ~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll 297 (702)
+.... +... .....+.+|+++++ |.++++...++.|.+||. ++.............+.+|++.| ++.+.
T Consensus 218 g~~~~-~~~~----~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~----~g~l~ 286 (300)
T 2qc5_A 218 GEISE-YDIP----TPNARPHAITAGKN-SEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK----DGSVW 286 (300)
T ss_dssp CCEEE-EECS----STTCCEEEEEECST-TCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT----TSCEE
T ss_pred CcEEE-EECC----CCCCCceEEEECCC-CCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC----CCCEE
Confidence 44332 2221 12467899999999 886666666799999998 45443321111134578899886 56677
Q ss_pred EEeCCCEEEEEeC
Q 005325 298 ITTDNHIVRIWDP 310 (702)
Q Consensus 298 ~ss~Dg~V~IWd~ 310 (702)
+++.. .|..+|.
T Consensus 287 v~~~~-~i~~~~p 298 (300)
T 2qc5_A 287 FALKC-KIGKLNL 298 (300)
T ss_dssp EECSS-EEEEEEE
T ss_pred EEccC-ceEEeCC
Confidence 76654 6766664
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.22 E-value=6e-09 Score=113.96 Aligned_cols=271 Identities=16% Similarity=0.098 Sum_probs=186.6
Q ss_pred CCCCEEEEEEecC----CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE----------CCCeEEEEecCCc
Q 005325 72 PDGEFLIVSGIYP----PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC----------ADRSISLHAKYGK 137 (702)
Q Consensus 72 pDG~~llatGs~d----g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s----------~D~~I~iw~~~g~ 137 (702)
|++.+++++...+ +.|.++|+.+....-.-...... -+.++||+++|+.+. .++.|.++|....
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 6788866666544 79999999997665444444445 567899999887775 3678999998743
Q ss_pred e--EEEecC--------CCccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEE
Q 005325 138 H--YSLRIP--------RMGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACG 204 (702)
Q Consensus 138 ~--~~~~i~--------~~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasg 204 (702)
. ..+.++ .....+.+.+....+|++.. ++.|.++|+.+++.+..+.... |....|.+ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 2 234444 23448899999999999874 5789999999999998876532 23344444 667777
Q ss_pred EcCCeEEEEECCCCcceeEEecccCCCCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee--cc-----
Q 005325 205 GEDGAVECFDMRMRSSAARINAVAPAGDADQE-VTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD--HM----- 276 (702)
Q Consensus 205 s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~-Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~--h~----- 276 (702)
+.||.+.+.++.+++...... ...... ..+ ...+.|.++ +..++..+..+.|.+.|+.......+.. ..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~-~~~~v~-~~p~~~~~~~~~d-g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNT-EVFHTE-DELLINHPAFSLR-SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEEC-CCCSCT-TSCBCSCCEECTT-TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred cCCCCEEEEECCCCcEEEEee-eeeccC-CCceeeEeeecCC-CCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 889999999986655443221 100000 112 224678999 7777777888999999997655332110 00
Q ss_pred ----CCCCeEEEEEeeccCCCCCeEEEeC----------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCC-EEEEE
Q 005325 277 ----FDSPIVDIKWHQSINTERPKLITTD----------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSG-LLLLA 341 (702)
Q Consensus 277 ----~~~~I~sl~fsp~~~~~~~ll~ss~----------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~-~l~~a 341 (702)
.......++++| ++.+++++.. ++.|.|+|+.+++.+.++.. ....+.|+|+|++. +++++
T Consensus 313 ~~g~~p~g~~~va~s~---dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHR---QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp GGTEEECSSSCEEEEG---GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred ccccccCCceeeEEcC---CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEE
Confidence 001122368887 4455555532 35799999999999999987 56789999999998 89999
Q ss_pred e-CCCcEEEEEcCCC
Q 005325 342 L-DCSQIPSYFIPDL 355 (702)
Q Consensus 342 ~-~d~~I~~~~ip~l 355 (702)
+ .++.|.++.....
T Consensus 389 n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 389 SAGTQTLHIYDAATG 403 (426)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred cCCCCeEEEEECCCC
Confidence 8 5899999986543
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.21 E-value=2.7e-09 Score=125.62 Aligned_cols=239 Identities=12% Similarity=0.043 Sum_probs=151.8
Q ss_pred ceeEEEECCCCCEEEEEEecCC----cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCe-----------
Q 005325 64 ATTKIRETPDGEFLIVSGIYPP----QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRS----------- 128 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg----~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~----------- 128 (702)
.+..++|||||++|+.+....| .|++||+.+....-. +....-.....++|| +.|++++.+..
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 5788999999999555544434 599999988443211 111100124568899 99998887654
Q ss_pred ---EEEEecCCce----EEEecCCC---ccceEEecCCCcEEEEecC-----CCEEEEECCCC--eEEEEeecCCCCeEE
Q 005325 129 ---ISLHAKYGKH----YSLRIPRM---GRDMAYNSWSCDLLCAASS-----PELYRINLEQG--RFLSSLNTQSPALNV 191 (702)
Q Consensus 129 ---I~iw~~~g~~----~~~~i~~~---~~~l~~~~~s~~llv~s~d-----~~V~vwdl~~g--~~~~~l~~h~~~V~~ 191 (702)
|.+|++.+.. .....+.. ...+.+.+.+..|++.+.+ ..|++||+.++ .....+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 8888876322 22222222 2356666666667766644 37999999887 314555555555555
Q ss_pred EEEcCCCCEEEEEEcC----CeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-
Q 005325 192 VSRSKLHGLIACGGED----GAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR- 265 (702)
Q Consensus 192 l~~sp~~~llasgs~D----G~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr- 265 (702)
.. +|++..|+..+.+ +.|.+||+.++. ....+..+ +...+.+++|+ + +.++++...++..+||.+.
T Consensus 322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-----~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-----SKDNLESVGIA-G-NRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp EE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-----CSSEEEEEEEE-B-TEEEEEEEETTEEEEEEEET
T ss_pred EE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-----CCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeC
Confidence 53 4888888887763 459999998752 33333333 13457788887 4 6788888999988777654
Q ss_pred CCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCCce
Q 005325 266 SSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETGES 315 (702)
Q Consensus 266 s~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg~~ 315 (702)
.+..+..........|..+.++| ++..++++. ..++|.+||+.+++.
T Consensus 394 ~g~~~~~l~~~~~~~v~~~~~s~---d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 394 DGKPAGAVSLPGIGSASGLSGRP---GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TSCEEEECBCSSSCEEEEEECCB---TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCceeeccCCCCeEEEEeecCC---CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 34443322211145688899987 444555433 268899999998863
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=3.2e-10 Score=122.47 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=107.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 005325 185 QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL 264 (702)
Q Consensus 185 h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl 264 (702)
+.. |+.|+| ++.+|+++ .++.|.+||+++......+..+ ...|.++.+.+. .+++++.||.|.+||+
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~------~~~v~~i~~~~p---~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSF------EKPVFQLKNVNN---TLVILNSVNDLSALDL 153 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEEC------SSCEEEEEECSS---EEEEEETTSEEEEEET
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcccee------ecceeeEEecCC---CEEEEECCCCEEEEEc
Confidence 455 999999 88999998 8899999999987766656555 567888888755 3899999999999999
Q ss_pred CCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCce--eEEe------c---CCCCceeEEEEEc
Q 005325 265 RSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGES--MTSI------E---PTAGKINDVCVFK 333 (702)
Q Consensus 265 rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~--l~~i------~---~h~~~I~~v~~~p 333 (702)
..+.... + ...|++++|+| .+ +++++.||.|++|+..++.. ..+| . +|...|.+|+|.+
T Consensus 154 ~~~~~~~---~--~~~Vs~v~WSp----kG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 154 RTKSTKQ---L--AQNVTSFDVTN----SQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp TTCCEEE---E--EESEEEEEECS----SE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred cCCcccc---c--cCCceEEEEcC----Cc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 9877643 2 34799999998 44 78888899999999887775 6667 2 3678999999999
Q ss_pred CCCEEEE
Q 005325 334 DSGLLLL 340 (702)
Q Consensus 334 ~~~~l~~ 340 (702)
+..++++
T Consensus 224 ~~~flv~ 230 (388)
T 1xip_A 224 PQDFLAV 230 (388)
T ss_dssp SSEEEEE
T ss_pred CCeEEEE
Confidence 8876665
No 210
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=5.8e-09 Score=121.52 Aligned_cols=279 Identities=9% Similarity=0.065 Sum_probs=177.8
Q ss_pred CCCEEEEEEecCCcEEEEEcCCceEEEeeecC------CceEEEEEEcCCCCEEEEEEC------CCeEEEEecC-CceE
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLSLKFERHLD------SEIINFEVLADDYSKLAFLCA------DRSISLHAKY-GKHY 139 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~------~~vv~~~~ls~dg~~Las~s~------D~~I~iw~~~-g~~~ 139 (702)
++.. |++++.++.|..+|..+....+..... ..+.....+. + ..+++++. ++.|..+|.. |...
T Consensus 127 ~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-K-GKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCE-EEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-C-CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 3455 677788999999999886554444332 1111111122 2 44544443 6889988876 4332
Q ss_pred -EEecCCCc---------------------------------cceEEecCCCcEEEEecCC-------------------
Q 005325 140 -SLRIPRMG---------------------------------RDMAYNSWSCDLLCAASSP------------------- 166 (702)
Q Consensus 140 -~~~i~~~~---------------------------------~~l~~~~~s~~llv~s~d~------------------- 166 (702)
.+...... ..+++.+....++++..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 22221100 1356666666677776553
Q ss_pred CEEEEECCCCeEEEEeecCC---------CCeEEEEEcCCC---CEEEEEEcCCeEEEEECCCCcceeEEecccCC----
Q 005325 167 ELYRINLEQGRFLSSLNTQS---------PALNVVSRSKLH---GLIACGGEDGAVECFDMRMRSSAARINAVAPA---- 230 (702)
Q Consensus 167 ~V~vwdl~~g~~~~~l~~h~---------~~V~~l~~sp~~---~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~---- 230 (702)
.|+.+|..+|+.+..++... .....+....++ .++++++.+|.|.++|..+++.+..+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 49999999999988876521 123333444466 68999999999999999999988777643100
Q ss_pred -CCCCCCe------------------------EEEEEcCCCCCEEEEEeC------------------------------
Q 005325 231 -GDADQEV------------------------TALEFDSNGGFLMGVGSS------------------------------ 255 (702)
Q Consensus 231 -~~~~~~V------------------------tslafspd~g~~LasGs~------------------------------ 255 (702)
.....++ ..++|+|+ +.+|++.+.
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0000001 25789998 777776543
Q ss_pred -------------CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC
Q 005325 256 -------------TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 256 -------------DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h 322 (702)
.|.|..||+.+++.+....+ +.++....+.+ .++.+++++.++.|++||..+|+.+.++...
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~---~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEe---CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 27899999999998886655 44555555654 3566666778999999999999999998753
Q ss_pred C-CceeEEEEEcCCCEEEEE-eC----------------CCcEEEEEcCCCCCCCC
Q 005325 323 A-GKINDVCVFKDSGLLLLA-LD----------------CSQIPSYFIPDLGPTPK 360 (702)
Q Consensus 323 ~-~~I~~v~~~p~~~~l~~a-~~----------------d~~I~~~~ip~lg~ap~ 360 (702)
. ...+-+.|.+++..+++. .. .+.+.+|.+|.....|.
T Consensus 518 ~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a~~~~ 573 (677)
T 1kb0_A 518 TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARMPE 573 (677)
T ss_dssp SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCCCC
T ss_pred CCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccccccc
Confidence 3 233345666777644443 22 36788888885444444
No 211
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=3e-09 Score=107.89 Aligned_cols=196 Identities=8% Similarity=-0.043 Sum_probs=136.0
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+.+|+++++|.. +++.. ++.|.+|+...................+.+++++..+++...++.|.+|+.........
T Consensus 67 ~~p~~i~~~~~g~l-~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTV-YVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCE-EEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCE-EEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 34678999999985 55555 88999999877433222111212245566778888777767788999997654322221
Q ss_pred c-C--CCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 005325 143 I-P--RMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 143 i-~--~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~ 218 (702)
. . .....+++.+.+ .++++.. ++.|++||...+........+...+.+|++++++.++++...++.|.+||....
T Consensus 145 ~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 1 1 133477777755 4776664 568999999887665443344467899999999988888777899999999765
Q ss_pred cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 219 SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 219 ~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
.... +... +...+.+|+++|+ |.++++...++.|.+|++...+
T Consensus 224 ~~~~-~~~~-----~~~~p~~i~~~~~-g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 224 TSTV-LPFT-----GLNTPLAVAVDSD-RTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCEE-CCCC-----SCSCEEEEEECTT-CCEEEEEGGGTEEEEECCCGGG
T ss_pred ccee-eccC-----CCCCceeEEECCC-CCEEEEECCCCEEEEEcCCCcc
Confidence 4322 2211 1257899999999 8888888899999999987543
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=2.6e-08 Score=105.12 Aligned_cols=222 Identities=10% Similarity=-0.015 Sum_probs=140.1
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecC
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIP 144 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~ 144 (702)
..++.|+|++..+++++...+.|.+|+..+........ .. .+..+.+++++..+++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~-~v~~i~~~~dg~l~v~~-~------------------- 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PF-MGSALAKISDSKQLIAS-D------------------- 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SS-CEEEEEEEETTEEEEEE-T-------------------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CC-cceEEEEeCCCeEEEEE-C-------------------
Confidence 35778999988878888888999999987744322111 22 23333444554433322 2
Q ss_pred CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec----CCCCeEEEEEcCCCCEEEEEEc------CCeEEEEE
Q 005325 145 RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT----QSPALNVVSRSKLHGLIACGGE------DGAVECFD 214 (702)
Q Consensus 145 ~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l~~sp~~~llasgs~------DG~V~iWD 214 (702)
..|++||+.++++...... ....+++++++|+++++++... .+.|..+|
T Consensus 109 ---------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 109 ---------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp ---------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred ---------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 2245566666654322111 1235889999999987776543 24566666
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcC--CC-eE-----EEEeeccCCCCeEEEE
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLR--SS-YP-----IRVKDHMFDSPIVDIK 285 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlr--s~-~~-----l~~~~h~~~~~I~sl~ 285 (702)
+++. ..+... ......++|+|+ +..|+++ +.++.|.+||+. ++ .. +..... ....+..++
T Consensus 168 --~g~~-~~~~~~------~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~ 236 (326)
T 2ghs_A 168 --KGKV-TKLFAD------ISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSV 236 (326)
T ss_dssp --TTEE-EEEEEE------ESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEE
T ss_pred --CCcE-EEeeCC------CcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-CCCCCCeeE
Confidence 4443 223222 245789999999 8766544 557899999986 55 31 111111 123467888
Q ss_pred EeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEE-cCCCEEEEEeCCC
Q 005325 286 WHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVF-KDSGLLLLALDCS 345 (702)
Q Consensus 286 fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~-p~~~~l~~a~~d~ 345 (702)
+.+ ++.+.++. .++.|.+||. +++.+..+..+...+.+++|. |+++.|++++...
T Consensus 237 ~d~----~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 237 CDA----EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ECT----TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ECC----CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 885 55566555 5788999998 688888887766689999998 8888776665543
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.18 E-value=1.5e-08 Score=110.65 Aligned_cols=237 Identities=10% Similarity=-0.017 Sum_probs=159.2
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCC--eEEEEecCCceE-E
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADR--SISLHAKYGKHY-S 140 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~--~I~iw~~~g~~~-~ 140 (702)
....|+|+++|+. +++...++.|++||+.+..+......... .. +.+++++..|+++..++ .|.+|+..+... .
T Consensus 132 ~P~~la~d~~g~l-yv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTV-LAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEE-EEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCE-EEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999985 78888889999999987444322222222 23 67889999988888766 788888764322 1
Q ss_pred Ee------cCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEE----eecCCCCe--EEEEEcCC-CCEEEEEEcC
Q 005325 141 LR------IPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSS----LNTQSPAL--NVVSRSKL-HGLIACGGED 207 (702)
Q Consensus 141 ~~------i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~----l~~h~~~V--~~l~~sp~-~~llasgs~D 207 (702)
.. ......++++.+....|+++..++.|++||+.++..... ...+...- +.++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 11 122344888888788888887778899999988764322 22222222 39999995 6677777778
Q ss_pred CeEEEEECCCCcceeEEecccCCC---------CCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCeEEEEeeccC
Q 005325 208 GAVECFDMRMRSSAARINAVAPAG---------DADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSYPIRVKDHMF 277 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~---------~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~~l~~~~h~~ 277 (702)
+.|..||.... +..+....... ..-.....|+|+|+ |.++++-+ .++.|+.||+.++....+.++..
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 99999998743 33332221000 00135789999999 88777777 88999999988887665555410
Q ss_pred -------------CCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 278 -------------DSPIVDIKWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 278 -------------~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
-.....|+++| ++.++++- .++.|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~----~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG----EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS----SSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC----CCCEEEEECCCCeEEEEEe
Confidence 12468899987 45555554 5777777654
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.17 E-value=2e-09 Score=112.61 Aligned_cols=261 Identities=11% Similarity=0.010 Sum_probs=166.3
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-Eec
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRI 143 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i 143 (702)
+.++.+.++|.. ..|+.+ |..||...... ........+.....+. ...|..++.++.|..++..|.... ...
T Consensus 62 ~~~~~~~~~g~l--~v~t~~--l~~~d~~g~~~-~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~ 134 (330)
T 3hxj_A 62 ECRPSIGKDGTI--YFGSDK--VYAINPDGTEK-WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKT 134 (330)
T ss_dssp EECCEETTTTEE--CCSSCE--EEEECCCGGGG-GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEEC
T ss_pred ccceEEecCCcE--EEecCc--EEEECCCCcEE-EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcC
Confidence 466777778865 334444 88888633111 1111111111112222 366777888888999988754322 222
Q ss_pred CCCc-cceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCccee
Q 005325 144 PRMG-RDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAA 222 (702)
Q Consensus 144 ~~~~-~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~ 222 (702)
+... ..+.. .....+++++.++.|+.||.. ++.+..+......+.++.+.+++.+++. + +.|..|| .++..+.
T Consensus 135 ~~~~~~~~~~-~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 135 KKAIYATPIV-SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp SSCCCSCCEE-CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEE
T ss_pred CCceeeeeEE-cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEE
Confidence 2222 13333 334558888888999999999 8888777766667888888777776554 4 8899999 6777666
Q ss_pred EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 223 RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 223 ~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
.+... ...+.++.++++ | .|.+++.++.|..+|. ++..+...... ...+.++.+.+ ++.+.+++.+
T Consensus 209 ~~~~~------~~~~~~~~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~----~g~l~v~t~~ 274 (330)
T 3hxj_A 209 NFYAG------YWTVTRPAISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGN----TDTIYFGSYD 274 (330)
T ss_dssp EECCS------SCCCSCCEECTT-S-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECT----TSCEEEECTT
T ss_pred EEccC------CcceeceEECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcC----CCeEEEecCC
Confidence 66654 466888899877 5 5666778888888884 45555433221 22334455543 6788888888
Q ss_pred CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 303 HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 303 g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.|..+|. +++.+..+......+.+++..+++. |++++.+|.+.+...+.
T Consensus 275 ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 275 GHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 88999996 7887777765456677776656554 77789999887765443
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.16 E-value=1.3e-08 Score=105.44 Aligned_cols=232 Identities=10% Similarity=0.094 Sum_probs=148.7
Q ss_pred eeEEEECCCCCEEEEE-------EecCCcEEEEEcCCceEE-Eee-----ecCCceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 65 TTKIRETPDGEFLIVS-------GIYPPQVKVYELRQLSLK-FER-----HLDSEIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 65 v~~i~~SpDG~~llat-------Gs~dg~I~vwdl~~~~~~-~~~-----h~~~~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
..+++|+++|.. +++ ++.++.|.+|+..+.... +.. +. .. +..+.+++++..|..++....|.+
T Consensus 20 ~~~~~~~~~g~l-~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~-~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 20 AEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GI-PAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CC-EEEEEECSSSSEEEEEETTTEEEE
T ss_pred ccCceECCCCCE-EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-CC-CceEEEecCCCcEEEEECCCCEEE
Confidence 468899999976 666 577899999997664332 221 21 22 445557777234444454557888
Q ss_pred EecCCceEEE-ecC------CCccceEEecCCCcEEEEecC----------------CCEEEEECCCCeEEEEeecCCCC
Q 005325 132 HAKYGKHYSL-RIP------RMGRDMAYNSWSCDLLCAASS----------------PELYRINLEQGRFLSSLNTQSPA 188 (702)
Q Consensus 132 w~~~g~~~~~-~i~------~~~~~l~~~~~s~~llv~s~d----------------~~V~vwdl~~g~~~~~l~~h~~~ 188 (702)
|+..+....+ ... ....++++.+.+ .+++++.. +.|++||.. +++.... .+...
T Consensus 97 ~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~ 173 (314)
T 1pjx_A 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQF 173 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESS
T ss_pred EeCCCCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCC
Confidence 9887544332 111 112366666654 56666543 468888876 6654332 33345
Q ss_pred eEEEEEc----CCCCEE-EEEEcCCeEEEEECC-CCcce--eEEecccCCCCCC-CCeEEEEEcCCCCCEEEEEeCCCeE
Q 005325 189 LNVVSRS----KLHGLI-ACGGEDGAVECFDMR-MRSSA--ARINAVAPAGDAD-QEVTALEFDSNGGFLMGVGSSTGKV 259 (702)
Q Consensus 189 V~~l~~s----p~~~ll-asgs~DG~V~iWD~~-t~~~v--~~l~~~~~~~~~~-~~Vtslafspd~g~~LasGs~DG~V 259 (702)
.+.++|+ |+++.| ++.+.++.|.+||+. ++... ..+... ..+. ..+..|+++++ |.++++...++.|
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i 249 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI---PGTHEGGADGMDFDED-NNLLVANWGSSHI 249 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC---CCCSSCEEEEEEEBTT-CCEEEEEETTTEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC---CCCCCCCCCceEECCC-CCEEEEEcCCCEE
Confidence 7899999 998654 554568999999986 34311 111111 0112 45789999999 8888887788999
Q ss_pred EEEEcCCCeEEE-EeeccCCCCeEEEEEeeccCCCCC-eEEEe-CCCEEEEEeCCC
Q 005325 260 LIYDLRSSYPIR-VKDHMFDSPIVDIKWHQSINTERP-KLITT-DNHIVRIWDPET 312 (702)
Q Consensus 260 ~lwDlrs~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~-ll~ss-~Dg~V~IWd~~t 312 (702)
.+||..+++.+. +..+ ...+.+++|+| ++. +++++ .++.|.+|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~--~~~~~~i~~~~----dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCP--FEKPSNLHFKP----QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECS--SSCEEEEEECT----TSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCC--CCCceeEEECC----CCCEEEEEeCCCCeEEEEeCCC
Confidence 999998666544 3333 35789999987 444 65555 567899999874
No 216
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.15 E-value=3.1e-09 Score=109.99 Aligned_cols=189 Identities=12% Similarity=0.023 Sum_probs=129.4
Q ss_pred ceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 149 DMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 149 ~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.+++.+.... +++...++.|++||+.++ ...+..+...+.+++++|++.++++...++.|.+||+.+++........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 5666666553 444555677888999887 5667777778999999999998888777799999999887754333221
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEE----Ee-------------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGV----GS-------------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~Las----Gs-------------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
. ......+..++++|+ |.++++ |+ ..+.|..||.. +....+..+ ......++|+|
T Consensus 110 ~--~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~gi~~s~-- 181 (296)
T 3e5z_A 110 E--GKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--RVKPNGLAFLP-- 181 (296)
T ss_dssp T--TEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--CSSEEEEEECT--
T ss_pred C--CCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--CCCCccEEECC--
Confidence 0 001235678999999 888877 33 13466666665 554444444 34678999998
Q ss_pred CCCCCeEEEe-CCCEEEEEeCC-CCce---eEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 291 NTERPKLITT-DNHIVRIWDPE-TGES---MTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 291 ~~~~~ll~ss-~Dg~V~IWd~~-tg~~---l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
++.++++. .++.|.+|++. +|.+ ...+..+...+..+++.+++.++++. ++.|.+|.
T Consensus 182 --dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 182 --SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp --TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred --CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 44444443 57899999997 5655 23333445677889999998855544 77777775
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=6.2e-08 Score=113.03 Aligned_cols=258 Identities=10% Similarity=0.092 Sum_probs=159.7
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecC------CceEEEEEEcCCCCEEEEEE------CCCeEEEEecC-CceE-
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLD------SEIINFEVLADDYSKLAFLC------ADRSISLHAKY-GKHY- 139 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~------~~vv~~~~ls~dg~~Las~s------~D~~I~iw~~~-g~~~- 139 (702)
+.. |++++.++.|..+|..+....+..... ..+.....+. + ..+++++ .++.|..||.. |...
T Consensus 121 ~g~-v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGK-VYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTE-EEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCE-EEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 445 677889999999999885554443321 1111111111 3 3444433 36888888876 4432
Q ss_pred EEec-CCC---------------------------c----cceEEecCCCcEEEEecCC-------------------CE
Q 005325 140 SLRI-PRM---------------------------G----RDMAYNSWSCDLLCAASSP-------------------EL 168 (702)
Q Consensus 140 ~~~i-~~~---------------------------~----~~l~~~~~s~~llv~s~d~-------------------~V 168 (702)
.+.. +.. + ..+.+.+....++++..++ .|
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 2221 110 0 1456666666677777664 39
Q ss_pred EEEECCCCeEEEEeec--CC-------CCeEEEEEcCCCC---EEEEEEcCCeEEEEECCCCcceeEEecccC-------
Q 005325 169 YRINLEQGRFLSSLNT--QS-------PALNVVSRSKLHG---LIACGGEDGAVECFDMRMRSSAARINAVAP------- 229 (702)
Q Consensus 169 ~vwdl~~g~~~~~l~~--h~-------~~V~~l~~sp~~~---llasgs~DG~V~iWD~~t~~~v~~l~~~~~------- 229 (702)
+.||+.+|+.+..++. |. ..+....+..++. +++.++.+|.|+++|..+++.+........
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999999988765 21 1222223333453 788999999999999999998754433200
Q ss_pred ---------------CCCC-----------CCCeEEEEEcCCCCCEEEEEeC----------------------------
Q 005325 230 ---------------AGDA-----------DQEVTALEFDSNGGFLMGVGSS---------------------------- 255 (702)
Q Consensus 230 ---------------~~~~-----------~~~Vtslafspd~g~~LasGs~---------------------------- 255 (702)
.... ...-..++|+|+ ..+|++++.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD-TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-CCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0000 001123789998 667766532
Q ss_pred -----------------CCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEE
Q 005325 256 -----------------TGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTS 318 (702)
Q Consensus 256 -----------------DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~ 318 (702)
+|.|..||+.+++.+....+ +.++....+.. .++.+++++.|+.|++||..+|+.+..
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~t---agglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLST---AGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceE---CCCEEEEECCCCcEEEEECCCCcccee
Confidence 37899999999998885554 34444444553 355666677899999999999999998
Q ss_pred ecCCCC-ceeEEEEEcCCCEEEE
Q 005325 319 IEPTAG-KINDVCVFKDSGLLLL 340 (702)
Q Consensus 319 i~~h~~-~I~~v~~~p~~~~l~~ 340 (702)
+....+ ..+-+.|..++...++
T Consensus 512 ~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EECSSCCCSCCEEEEETTEEEEE
T ss_pred eeCCCCcccCceEEEECCEEEEE
Confidence 876333 2244667677664433
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=3e-08 Score=108.32 Aligned_cols=236 Identities=10% Similarity=0.019 Sum_probs=152.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEE-EecC-CCccceEEecCCCcEEEEecCC--CEEEEECCCCeEEEEe-
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYS-LRIP-RMGRDMAYNSWSCDLLCAASSP--ELYRINLEQGRFLSSL- 182 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~-~~i~-~~~~~l~~~~~s~~llv~s~d~--~V~vwdl~~g~~~~~l- 182 (702)
...+.+++++..+++...++.|.+|+..+.... +... ... .+++.+....|+++..++ .|++|+...+.....+
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-BCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-ceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 345567788776666666799999999853333 2222 222 377777777788887765 7999998876543333
Q ss_pred --ec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCC--CeEEEEEcCCCCCEEEEEeCCC
Q 005325 183 --NT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQ--EVTALEFDSNGGFLMGVGSSTG 257 (702)
Q Consensus 183 --~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~--~Vtslafspd~g~~LasGs~DG 257 (702)
.. +...+++++++|++..|+++..++.|..||+.++.. ..+.... ...... +...|+|+|+++.++++...++
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEeccc-ccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 12 445688999999555555567789999999987653 2221100 000111 1239999995366666777789
Q ss_pred eEEEEEcCCCeEEEEeecc----C---------CCCeEEEEEeeccCCCCCeEEE-e-CCCEEEEEeCCCCceeEEecCC
Q 005325 258 KVLIYDLRSSYPIRVKDHM----F---------DSPIVDIKWHQSINTERPKLIT-T-DNHIVRIWDPETGESMTSIEPT 322 (702)
Q Consensus 258 ~V~lwDlrs~~~l~~~~h~----~---------~~~I~sl~fsp~~~~~~~ll~s-s-~Dg~V~IWd~~tg~~l~~i~~h 322 (702)
.|+.||.... ...+.++. + -.....|+|+| ++.++++ . .++.|++|++.+|... .+.++
T Consensus 290 ~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~----dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~ 363 (409)
T 3hrp_A 290 SVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE----DGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQ 363 (409)
T ss_dssp EEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT----TCCEEEEETTTTCEEEEEETTTTEEE-EEEEC
T ss_pred EEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC----CCCEEEEeCCCCCEEEEEECCCCEEE-EEeCC
Confidence 9999997654 33333331 0 12368999997 4445554 4 6889999998777643 34332
Q ss_pred ---------------CCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 323 ---------------AGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 323 ---------------~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
-.....|++.|++.++++-..+.+|+.+.+
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 135788999999666666666777777643
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.06 E-value=5e-08 Score=101.29 Aligned_cols=186 Identities=10% Similarity=-0.002 Sum_probs=124.9
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec----CCceEEEEEEcCCCCEEEEEECC---------
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL----DSEIINFEVLADDYSKLAFLCAD--------- 126 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~----~~~vv~~~~ls~dg~~Las~s~D--------- 126 (702)
.++..+.+++++|+|++ +++. +..|.+||..+..+...... ...-...+.++++|..+++....
T Consensus 51 ~~~~~~~~i~~~~dG~l-~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGGY-VATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp ECSSCEEEEEEBTTSSE-EEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred eCCCceEEEEECCCCCE-EEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 35677899999999996 4432 56899999887444322111 11123446678898866654321
Q ss_pred --CeEEEEecCCceEEE-ecCCCccceEEecCCCcEEEEec-CCCEEEEEC--CCCeEE-----EEeecCCCCeEEEEEc
Q 005325 127 --RSISLHAKYGKHYSL-RIPRMGRDMAYNSWSCDLLCAAS-SPELYRINL--EQGRFL-----SSLNTQSPALNVVSRS 195 (702)
Q Consensus 127 --~~I~iw~~~g~~~~~-~i~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl--~~g~~~-----~~l~~h~~~V~~l~~s 195 (702)
+.|..++..+....+ ........+++.+....++++.. .+.|++|++ .+|... ..+..+...+..+++.
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 234444444443322 11223347888887777776655 567999986 566532 2233334568899999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc-CCCCCEEEEEeC
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD-SNGGFLMGVGSS 255 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs-pd~g~~LasGs~ 255 (702)
+++++.++....+.|.+||+.+++.+..+..+ ...+++++|. |+ +..|++++.
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p------~~~~t~~~f~g~d-~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP------VDKTTSCCFGGKN-YSEMYVTCA 261 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECS------SSBEEEEEEESGG-GCEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC------CCCceEEEEeCCC-CCEEEEEcC
Confidence 99998888888899999999999999988877 4689999998 78 777766554
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=2.6e-07 Score=98.90 Aligned_cols=261 Identities=13% Similarity=0.083 Sum_probs=168.0
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeec----------CCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EE
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHL----------DSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SL 141 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~----------~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~ 141 (702)
+.. +.+++.++.|..||..+....+.... ...+...... ++..++.++.++.|..++.. |... ..
T Consensus 53 ~~~-v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNV-VYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTE-EEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCE-EEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 455 56677889999999987555444433 1222222222 34678888899999999976 5432 33
Q ss_pred ecCCCcc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCe-----EEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 142 RIPRMGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPAL-----NVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 142 ~i~~~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V-----~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
..+.... ..... ...+++++.++.|+.+|..+|+.+..+....... ....+. +..+++++.++.|..+|+
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 3332222 12221 3458888888999999999999888776543211 122222 457888888999999999
Q ss_pred CCCcceeEEecccCCCCC-CCC---e-EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc
Q 005325 216 RMRSSAARINAVAPAGDA-DQE---V-TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~-~~~---V-tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~ 290 (702)
.+++.+............ ... + ....+. +..+++++.+|.|..+|..+++.+..... .....+...
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~--- 276 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIVD--- 276 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEEE---
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceEE---
Confidence 999988777654110000 000 1 111122 45778888899999999999998875443 234555544
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++.+++++.++.|..+|..+|+.+..... ....+..... .++.|++++.++.++++....
T Consensus 277 --~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 277 --GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp --TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred --CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 67788888889999999999999887763 2223333333 356788888888888877543
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.03 E-value=4.3e-09 Score=113.65 Aligned_cols=162 Identities=10% Similarity=0.094 Sum_probs=120.3
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEecCC-------------ceEEEecCCCccceEEecCCCcEEEEecCCCEEEEEC
Q 005325 107 IINFEVLADDYSKLAFLCADRSISLHAKYG-------------KHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINL 173 (702)
Q Consensus 107 vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-------------~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl 173 (702)
.+..+.+++.+..+++++.++ +.+|+... ......++. ...+.| ....|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 367778888999999999885 55586441 113445566 667777 33445555 8899999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 174 EQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 174 ~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
.+.........|...|.++.+.+. .+++++.||.|.+||+.++.... . ...|+|++|||+ | +++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~------~~~Vs~v~WSpk-G--~~vg 178 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L------AQNVTSFDVTNS-Q--LAVL 178 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E------EESEEEEEECSS-E--EEEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c------cCCceEEEEcCC-c--eEEE
Confidence 877666666777778888876644 38889999999999999877543 2 257999999999 7 7889
Q ss_pred eCCCeEEEEEcCCCeE--EEEe-------ec-cCCCCeEEEEEee
Q 005325 254 SSTGKVLIYDLRSSYP--IRVK-------DH-MFDSPIVDIKWHQ 288 (702)
Q Consensus 254 s~DG~V~lwDlrs~~~--l~~~-------~h-~~~~~I~sl~fsp 288 (702)
..||+|++|+...... .... .| .+...|.+|+|.+
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 9999999999888774 3322 11 1257899999996
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=8.7e-09 Score=110.74 Aligned_cols=251 Identities=10% Similarity=0.017 Sum_probs=153.9
Q ss_pred EEEECCCCCEEEEEEe---------cCCcEEEEEcCCceEEEeeecC-------CceEEEEEEcCCCCEEEEEEC--CCe
Q 005325 67 KIRETPDGEFLIVSGI---------YPPQVKVYELRQLSLKFERHLD-------SEIINFEVLADDYSKLAFLCA--DRS 128 (702)
Q Consensus 67 ~i~~SpDG~~llatGs---------~dg~I~vwdl~~~~~~~~~h~~-------~~vv~~~~ls~dg~~Las~s~--D~~ 128 (702)
.+.+||||++++++.+ .++.|.+||+.++...-.-... ..--..+.++|||++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 6999999999666543 3688999999986553322111 011235668999999988875 467
Q ss_pred EEE--EecCCceEEEecCCCccceEEecCCCc-EEEEecCCCEEEEECCC-----CeEEE----EeecCCCCeEEEEEcC
Q 005325 129 ISL--HAKYGKHYSLRIPRMGRDMAYNSWSCD-LLCAASSPELYRINLEQ-----GRFLS----SLNTQSPALNVVSRSK 196 (702)
Q Consensus 129 I~i--w~~~g~~~~~~i~~~~~~l~~~~~s~~-llv~s~d~~V~vwdl~~-----g~~~~----~l~~h~~~V~~l~~sp 196 (702)
|.+ +|... ...+.++. ++...+.... +++.+.++.+.+.++.+ ++.+. .+.....+. . .+
T Consensus 149 v~V~~iD~~t-v~~i~v~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~ 220 (368)
T 1mda_H 149 AGLSVPGASD-DQLTKSAS---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN 220 (368)
T ss_dssp EEEEETTTEE-EEEEECSS---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET
T ss_pred EEEEEEchhh-ceEEECCC---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc
Confidence 888 77755 33333322 1222233333 34455677888888886 44331 111222233 3 56
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc--ceeEEecccC----CCCCCCCeEEEEEcCCCCCEEEEEeC---------CCeEEE
Q 005325 197 LHGLIACGGEDGAVECFDMRMRS--SAARINAVAP----AGDADQEVTALEFDSNGGFLMGVGSS---------TGKVLI 261 (702)
Q Consensus 197 ~~~llasgs~DG~V~iWD~~t~~--~v~~l~~~~~----~~~~~~~Vtslafspd~g~~LasGs~---------DG~V~l 261 (702)
++..++..+. +.|.+.|+.+.. .+..+..... ..........++|+|+ +..++++.. ++.+.+
T Consensus 221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d-g~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-TDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-TTEEEEEEEECSSCTTSCEEEEEE
T ss_pred cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC-CCEEEEEeccccCcccccCCCEEE
Confidence 6666666666 999999997542 2222221100 0000112223789999 887776543 235679
Q ss_pred EEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe--CCCEEEEEeCCCCceeEEecCCCCceeEEEEEc
Q 005325 262 YDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT--DNHIVRIWDPETGESMTSIEPTAGKINDVCVFK 333 (702)
Q Consensus 262 wDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss--~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p 333 (702)
||+.+.+.+....- +.....|+|+| ++..+++++ .++.|.|+|+.+++.+.++.. ......+++.+
T Consensus 299 iD~~t~~vv~~i~v--g~~p~gi~~s~---Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 299 VTASVGQTSGPISN--GHDSDAIIAAQ---DGASDNYANSAGTEVLDIYDAASDQDQSSVEL-DKGPESLSVQN 366 (368)
T ss_dssp EESSSCCEEECCEE--EEEECEEEECC---SSSCEEEEEETTTTEEEEEESSSCEEEEECCC-CSCCCEEECCC
T ss_pred EECCCCeEEEEEEC--CCCcceEEECC---CCCEEEEEccCCCCeEEEEECCCCcEEEEEEC-CCCCCEEEeec
Confidence 99999988773322 22578999998 455555555 489999999999999999987 45555666544
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=2.5e-11 Score=131.06 Aligned_cols=253 Identities=14% Similarity=0.083 Sum_probs=137.8
Q ss_pred CCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEecCCC--cc
Q 005325 73 DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLRIPRM--GR 148 (702)
Q Consensus 73 DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~--~~ 148 (702)
++.. +++|+.++.|.+||..+....+.... ..+.... +..++..+++++.|+.|..|+.. |... ....... ..
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p-~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP-THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEecC-CCceecc-eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 4666 78889999999999988666554443 3333322 33455677777899999999985 4322 2211100 00
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEeccc
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~ 228 (702)
..........+++++.++.|+.||+.+|+.+..+..+. .+.++|.+..+++++.|+.|.+||..+++.+..+...
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~- 159 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF- 159 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence 00000123347777888999999999999988776654 2345678889999999999999999999987776644
Q ss_pred CCCCCCCCeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEE-EEeeccCCCCCeEEE---eC
Q 005325 229 PAGDADQEVTALEFDSNGG---FLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDI-KWHQSINTERPKLIT---TD 301 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g---~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl-~fsp~~~~~~~ll~s---s~ 301 (702)
...+.+++++ . ..+++++.+|.|..||..+++.++.... ..++..+ .++ .++.+.+. ..
T Consensus 160 -------~~~~~~~~~~-~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--~~pv~~~~~~~----~dg~~~v~~~~~~ 225 (369)
T 2hz6_A 160 -------DYAASLPEDD-VDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--ASPVVAFYVWQ----REGLRKVMHINVA 225 (369)
T ss_dssp -------EECCBCCCCC-TTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--SSCEEEEEECT----TSSCEEECCEEEE
T ss_pred -------cccCccccCC-ccccceEEEECCCCEEEEEECCCCcEEEEecC--CCceEEEEEec----CCceEeccceeec
Confidence 1122334432 2 5677889999999999999998876554 5676553 222 23332211 11
Q ss_pred CCEEEEEeCCCCc----eeEEecCCCCceeEEEEEc--CCCEEEEEeCCCcEEEEEc
Q 005325 302 NHIVRIWDPETGE----SMTSIEPTAGKINDVCVFK--DSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 302 Dg~V~IWd~~tg~----~l~~i~~h~~~I~~v~~~p--~~~~l~~a~~d~~I~~~~i 352 (702)
++.+.++|..+|+ .+..+.. ...+. +| .++.|++++.++.++.+..
T Consensus 226 ~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~ 277 (369)
T 2hz6_A 226 VETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPS 277 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEE
T ss_pred ccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCc
Confidence 3446666666666 4444433 22221 22 3456777888887766543
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.96 E-value=2.9e-07 Score=97.06 Aligned_cols=185 Identities=15% Similarity=0.073 Sum_probs=120.2
Q ss_pred cCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec----CCceEEEEEEcCCCCEEEEEEC------CCeE
Q 005325 60 WFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL----DSEIINFEVLADDYSKLAFLCA------DRSI 129 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~----~~~vv~~~~ls~dg~~Las~s~------D~~I 129 (702)
.++..+.+++++|+|++++++ ...|.+||..+......... ....+..+.++++|..+++... .+.|
T Consensus 87 ~~~~~v~~i~~~~dg~l~v~~---~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 87 ALPFMGSALAKISDSKQLIAS---DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp ECSSCEEEEEEEETTEEEEEE---TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred ECCCcceEEEEeCCCeEEEEE---CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 346789999999999984433 34599999876443222111 1122455667889887665432 2445
Q ss_pred EEEecCCceEEEec-CCCccceEEecCCCcEEEEec-CCCEEEEECC--CC-e-----EEEEeecCCCCeEEEEEcCCCC
Q 005325 130 SLHAKYGKHYSLRI-PRMGRDMAYNSWSCDLLCAAS-SPELYRINLE--QG-R-----FLSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 130 ~iw~~~g~~~~~~i-~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~--~g-~-----~~~~l~~h~~~V~~l~~sp~~~ 199 (702)
..++ .+....+.. ......+++.+....++++.. .+.|++|++. +| . .+..+......+..+++.++++
T Consensus 164 ~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 164 YHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp EEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred EEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 5556 443332211 122336777777766766654 5789999986 66 3 2223333345678899999999
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc-CCCCCEEEEEeCC
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD-SNGGFLMGVGSST 256 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs-pd~g~~LasGs~D 256 (702)
++++...++.|.+||+ +++.+..+..+ ...+++++|+ |+ +..|++++..
T Consensus 243 lwva~~~~~~v~~~d~-~g~~~~~i~~~------~~~~~~~af~g~d-~~~L~vt~~~ 292 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDT-DGNHIARYEVP------GKQTTCPAFIGPD-ASRLLVTSAR 292 (326)
T ss_dssp EEEEEETTTEEEEECT-TCCEEEEEECS------CSBEEEEEEESTT-SCEEEEEEBC
T ss_pred EEEEEeCCCEEEEECC-CCCEEEEEECC------CCCcEEEEEecCC-CCEEEEEecC
Confidence 8888777789999999 57777777766 4579999998 88 7777665544
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.92 E-value=2.4e-07 Score=98.32 Aligned_cols=235 Identities=13% Similarity=0.067 Sum_probs=146.2
Q ss_pred cceeeeecccCCCceeEEEECCCCCEEEEEEe--cCCcEEEEEcCCceEE-Eee-----ecCCceEEEEEEcCCCCEEEE
Q 005325 51 RRVELIQDLWFETATTKIRETPDGEFLIVSGI--YPPQVKVYELRQLSLK-FER-----HLDSEIINFEVLADDYSKLAF 122 (702)
Q Consensus 51 ~rieliqd~~~~~~v~~i~~SpDG~~llatGs--~dg~I~vwdl~~~~~~-~~~-----h~~~~vv~~~~ls~dg~~Las 122 (702)
..++++..+. ..+..|+++|+|+. +++.. .++.++||.+.+..+. +.. .........+.+++++..+++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~-~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRL-FLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCE-EEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred ceeEEEEEcC--CCcceEEECCCCCE-EEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 3567777766 67889999999988 66653 2343555555332221 110 001112555667888654444
Q ss_pred EEC-----CCeEEEEecC-Cc-eEEEecCC-------CccceEEecCCCcEEEEec----CCCEEEEECCCCeEEEEeec
Q 005325 123 LCA-----DRSISLHAKY-GK-HYSLRIPR-------MGRDMAYNSWSCDLLCAAS----SPELYRINLEQGRFLSSLNT 184 (702)
Q Consensus 123 ~s~-----D~~I~iw~~~-g~-~~~~~i~~-------~~~~l~~~~~s~~llv~s~----d~~V~vwdl~~g~~~~~l~~ 184 (702)
-.. +..|.+|+.. +. ...+.++. ...++++.+....++++.. ++.|++||+.+++....+..
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 322 5789999987 54 33344432 2247788776667777654 57899999999887766543
Q ss_pred CC-----------------------------CCeEEEEEcCCCCEEEEEEcCC-eEEEEECC---CCc-----c---eeE
Q 005325 185 QS-----------------------------PALNVVSRSKLHGLIACGGEDG-AVECFDMR---MRS-----S---AAR 223 (702)
Q Consensus 185 h~-----------------------------~~V~~l~~sp~~~llasgs~DG-~V~iWD~~---t~~-----~---v~~ 223 (702)
|. ..++.|+|+|++..|+++..++ .|..++.. .+. . +..
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence 21 2368899999998888877665 55555432 111 0 111
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
+ .+ ......|+++++ |.++++...++.|.+||..+++...+........+.+|+|.| ++.+++++
T Consensus 244 ~-g~------~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~----~g~l~v~~ 308 (343)
T 2qe8_A 244 Y-SE------KPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS----DGYLYFDC 308 (343)
T ss_dssp E-EE------CCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT----TSCEEEEE
T ss_pred c-cc------CCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC----CCcEEEEe
Confidence 1 11 235667999999 999999899999999998566644433221134578999986 45555554
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=2e-07 Score=108.42 Aligned_cols=273 Identities=10% Similarity=0.069 Sum_probs=176.3
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCc-----------eEEEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EE
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSE-----------IINFEVLADDYSKLAFLCADRSISLHAKY-GKH-YS 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~-----------vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~ 140 (702)
+.. |++++.++.|..+|..+....+....... +.....+ ++..|++++.|+.|..+|.. |.. ..
T Consensus 77 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 344 45667788999999988666554432211 0011112 34678888889999999986 543 23
Q ss_pred EecC-CCc--cceEE--ecCCCcEEEEec------CCCEEEEECCCCeEEEEeecCCCC---------------------
Q 005325 141 LRIP-RMG--RDMAY--NSWSCDLLCAAS------SPELYRINLEQGRFLSSLNTQSPA--------------------- 188 (702)
Q Consensus 141 ~~i~-~~~--~~l~~--~~~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~~--------------------- 188 (702)
.... ... ..+.. ......+++++. ++.|+.||..+|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 3333 100 01100 011334666654 578999999999998877543211
Q ss_pred -----------eEEEEEcCCCCEEEEEEcCC-------------------eEEEEECCCCcceeEEecccCC---CCCCC
Q 005325 189 -----------LNVVSRSKLHGLIACGGEDG-------------------AVECFDMRMRSSAARINAVAPA---GDADQ 235 (702)
Q Consensus 189 -----------V~~l~~sp~~~llasgs~DG-------------------~V~iWD~~t~~~v~~l~~~~~~---~~~~~ 235 (702)
...++++|++.+|++++.++ +|..+|..+++.+..+...... .....
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 13578889999999888764 5999999999998888764110 00012
Q ss_pred CeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCCCeEEEEeecc----------CCCCe---------------------
Q 005325 236 EVTALEFDSNGG---FLMGVGSSTGKVLIYDLRSSYPIRVKDHM----------FDSPI--------------------- 281 (702)
Q Consensus 236 ~Vtslafspd~g---~~LasGs~DG~V~lwDlrs~~~l~~~~h~----------~~~~I--------------------- 281 (702)
....+....+ | ..|++++.+|.|+++|..+++++...... .+.++
T Consensus 314 ~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 314 PMILADIKIA-GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp CCEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CcEEEecccC-CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 2333444446 7 68999999999999999999987633211 01111
Q ss_pred ---EEEEEeeccCCCCCeEEEeC-------------------------------------------CCEEEEEeCCCCce
Q 005325 282 ---VDIKWHQSINTERPKLITTD-------------------------------------------NHIVRIWDPETGES 315 (702)
Q Consensus 282 ---~sl~fsp~~~~~~~ll~ss~-------------------------------------------Dg~V~IWd~~tg~~ 315 (702)
..++|+| +.+.+++.+. .+.|..||+.+|+.
T Consensus 393 ~~w~~~a~dp---~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 393 HNWHPMSFNP---QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp SCSSCCEEET---TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred cCCCCceEcC---CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1456776 2333333321 27899999999999
Q ss_pred eEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 316 MTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 316 l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+..+.. ..+++...+...++++++++.++.+++|....
T Consensus 470 ~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 470 AWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred EeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 988875 55666666778888999999999999887654
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=1.6e-08 Score=105.64 Aligned_cols=256 Identities=12% Similarity=0.035 Sum_probs=166.7
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE-EEecCC
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY-SLRIPR 145 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~-~~~i~~ 145 (702)
++.+..+|.. ..|+.++.|..|| .+....+.......++.......++ .|..++.+ |..++..|... ....+.
T Consensus 24 ~~~~d~~g~l--~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~--l~~~d~~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGTI--YLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGSDK--VYAINPDGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSCE--ECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSSCE--EEEECCCGGGGGGSCC--
T ss_pred CceEccCCeE--EEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEecCc--EEEECCCCcEEEEEECCC
Confidence 4455567764 6667888899999 6655544443334344555555554 44444444 77777654321 111111
Q ss_pred Ccc-ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEE
Q 005325 146 MGR-DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 146 ~~~-~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l 224 (702)
... ..... ...+++++.++.|+.+|.. ++....+..+...+.++.+.+++. |..|+.++.|.+||.. ++.+..+
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~ 172 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF 172 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE
Confidence 111 22222 5668888888999999998 887777776666677777777776 5557788999999999 7777777
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCE
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHI 304 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~ 304 (702)
... ...+.++.+.++ +. |.+++ +.|..|| .+++.+...... ...+.++...+ ++.+.+++.++.
T Consensus 173 ~~~------~~~~~~~~~d~~-g~-l~v~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~----~g~l~v~t~~~g 236 (330)
T 3hxj_A 173 KTN------DAITSAASIGKD-GT-IYFGS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISE----DGTIYVTSLDGH 236 (330)
T ss_dssp ECS------SCCCSCCEECTT-CC-EEEES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECT----TSCEEEEETTTE
T ss_pred ecC------CCceeeeEEcCC-CE-EEEEe--CEEEEEC-CCCcEEEEEccC-CcceeceEECC----CCeEEEEcCCCe
Confidence 655 456778888777 65 44555 8899999 777666543331 34677787774 667888888888
Q ss_pred EEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 305 VRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 305 V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
|..+|. ++..+..+......+..+.+.+ .+.|++++.++.+..|.
T Consensus 237 l~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGKRIESSPVIGN-TDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEECT-TSCEEEEEECSSCCCSCCEECT-TSCEEEECTTCEEEEEC
T ss_pred EEEECC-CCCEeEEeeCCCCccccceEcC-CCeEEEecCCCCEEEEC
Confidence 888874 5677666665444445555543 45678888888887775
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=1.2e-07 Score=110.68 Aligned_cols=229 Identities=10% Similarity=0.087 Sum_probs=147.3
Q ss_pred eEEEEEEcCCCCEEEEEEC-----CCeEEEEecC-CceEEEecCCC-ccceEEecCCCcEEEEecCC-------------
Q 005325 107 IINFEVLADDYSKLAFLCA-----DRSISLHAKY-GKHYSLRIPRM-GRDMAYNSWSCDLLCAASSP------------- 166 (702)
Q Consensus 107 vv~~~~ls~dg~~Las~s~-----D~~I~iw~~~-g~~~~~~i~~~-~~~l~~~~~s~~llv~s~d~------------- 166 (702)
.+....+||||++||.+.. ...|++|++. |......++.. ...+.|. .+..|+.+..+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 3556679999999986442 2478999988 45444444433 3467888 777788777663
Q ss_pred CEEEEECCCCe----EEEEeec-CCCCeEEEEEcCCCCEEEEEEc----CCeEEEEECCCCc-ceeEEecccCCCCCCCC
Q 005325 167 ELYRINLEQGR----FLSSLNT-QSPALNVVSRSKLHGLIACGGE----DGAVECFDMRMRS-SAARINAVAPAGDADQE 236 (702)
Q Consensus 167 ~V~vwdl~~g~----~~~~l~~-h~~~V~~l~~sp~~~llasgs~----DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~ 236 (702)
.|++|++.++. .+..... |...+..+.|+|++.+|+.... ...|.+||+.++. ....+..+ ...
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~------~~~ 282 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD------LDA 282 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS------SSS
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC------CCc
Confidence 39999998764 3433334 4556788999999987765443 2589999998764 45555555 344
Q ss_pred eEEEEEcCCCCCEEE-EEeCC---CeEEEEEcCCCeE---EEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCC--EEE
Q 005325 237 VTALEFDSNGGFLMG-VGSST---GKVLIYDLRSSYP---IRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNH--IVR 306 (702)
Q Consensus 237 Vtslafspd~g~~La-sGs~D---G~V~lwDlrs~~~---l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg--~V~ 306 (702)
+... |+++ |..|+ +...+ +.|.+||+.++.+ ..+..|. ..+. .|+| ++..++++. .++ .|.
T Consensus 283 ~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~---~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 283 DVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHS---GSGYLFAEYMVDATARVE 353 (693)
T ss_dssp CEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEE---ETTEEEEEEEETTEEEEE
T ss_pred eEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEE---ECCEEEEEEEECCeeEEE
Confidence 4444 6666 55554 44333 6899999988654 3455553 2333 7776 455666665 344 689
Q ss_pred EEeCCCCceeEEec-CCCCceeEEEEEcCCCEEEEEeCC----CcEEEEEc
Q 005325 307 IWDPETGESMTSIE-PTAGKINDVCVFKDSGLLLLALDC----SQIPSYFI 352 (702)
Q Consensus 307 IWd~~tg~~l~~i~-~h~~~I~~v~~~p~~~~l~~a~~d----~~I~~~~i 352 (702)
+|++..+ ....+. ++.+.+..+.++|++..|+....+ +.+..|.+
T Consensus 354 ~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 354 QFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 9998744 445554 334567777788877766655443 45555544
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=4.4e-07 Score=98.60 Aligned_cols=234 Identities=9% Similarity=0.043 Sum_probs=150.5
Q ss_pred eEEEEC--CCCCEEEEEEecCCcEEEEEcCCc--eEEEeeec---------CC-ceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 66 TKIRET--PDGEFLIVSGIYPPQVKVYELRQL--SLKFERHL---------DS-EIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 66 ~~i~~S--pDG~~llatGs~dg~I~vwdl~~~--~~~~~~h~---------~~-~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
.|..++ +++++|+++|..++.|.|+|+.+. ..++.... .. .. .-+.++|++ .++++..+.
T Consensus 85 ~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~P-h~~~~~pdG-i~Vs~~g~~---- 158 (462)
T 2ece_A 85 LCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRL-HTVHCGPDA-IYISALGNE---- 158 (462)
T ss_dssp GSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEE-EEEEECSSC-EEEEEEEET----
T ss_pred cccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcc-cceeECCCe-EEEEcCCCc----
Confidence 344567 999999999999999999999742 22221111 10 11 112344555 333322210
Q ss_pred EecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC---CeEEEEEcCCCCEEEEEE---
Q 005325 132 HAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP---ALNVVSRSKLHGLIACGG--- 205 (702)
Q Consensus 132 w~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~---~V~~l~~sp~~~llasgs--- 205 (702)
.+...+.|.++|..+++.+..+..... .-..+-|+|+++.+++..
T Consensus 159 -----------------------------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~ 209 (462)
T 2ece_A 159 -----------------------------EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAV 209 (462)
T ss_dssp -----------------------------TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCC
T ss_pred -----------------------------CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcC
Confidence 012235688899999999888864322 233577899999888874
Q ss_pred ----------------cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEE--cCCCCCEEEEEe------CCCeEEE
Q 005325 206 ----------------EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEF--DSNGGFLMGVGS------STGKVLI 261 (702)
Q Consensus 206 ----------------~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslaf--spd~g~~LasGs------~DG~V~l 261 (702)
.+.+|.+||+.+++.+.++.... .......|.| +|+ +.++.+++ .+++|.+
T Consensus 210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~----~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v 284 (462)
T 2ece_A 210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE----ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWL 284 (462)
T ss_dssp HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT----TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEE
T ss_pred ccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC----CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEE
Confidence 36899999999998888887741 0133455655 999 88877776 5678888
Q ss_pred EEcCCCeEEE--E---eec--cC------------CCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC---CceeEE
Q 005325 262 YDLRSSYPIR--V---KDH--MF------------DSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET---GESMTS 318 (702)
Q Consensus 262 wDlrs~~~l~--~---~~h--~~------------~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t---g~~l~~ 318 (702)
|....+.... + ... .. +..+..|.++| ++.+|.++. ..+.|.+||+.. .+++..
T Consensus 285 ~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~---DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 285 WFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL---DDKFLYLSLWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT---TSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred EEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC---CCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence 7765543211 1 110 00 13467899997 455555555 488999999863 456666
Q ss_pred ecCCC--------------CceeEEEEEcCCCEEEEEe
Q 005325 319 IEPTA--------------GKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 319 i~~h~--------------~~I~~v~~~p~~~~l~~a~ 342 (702)
+.... +.-..++++|++..|++++
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 65411 1247899999999999998
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.89 E-value=2.9e-07 Score=107.33 Aligned_cols=273 Identities=11% Similarity=0.058 Sum_probs=170.8
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCc----------eE-EEEEEcCCCCEEEEEECCCeEEEEecC-CceE-E
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSE----------II-NFEVLADDYSKLAFLCADRSISLHAKY-GKHY-S 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~----------vv-~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~ 140 (702)
+.. |++++.++.|..+|..+....+....... ++ ....+ ++..|++++.|+.|..+|.. |... .
T Consensus 70 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGV-MYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTE-EEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCE-EEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 444 56667788999999988665544332111 00 01112 23678888889999999986 5433 2
Q ss_pred EecC-CCc--cceEEec--CCCcEEEEec------CCCEEEEECCCCeEEEEeecCC-----------------------
Q 005325 141 LRIP-RMG--RDMAYNS--WSCDLLCAAS------SPELYRINLEQGRFLSSLNTQS----------------------- 186 (702)
Q Consensus 141 ~~i~-~~~--~~l~~~~--~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~----------------------- 186 (702)
.... ... ..+...+ ....+++++. ++.|+.||..+|+.+..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 3222 110 0111001 1334555543 5679999999999987765310
Q ss_pred --------CCeEEEEEcCCCCEEEEEEcCCe-------------------EEEEECCCCcceeEEecccCC---CCCCCC
Q 005325 187 --------PALNVVSRSKLHGLIACGGEDGA-------------------VECFDMRMRSSAARINAVAPA---GDADQE 236 (702)
Q Consensus 187 --------~~V~~l~~sp~~~llasgs~DG~-------------------V~iWD~~t~~~v~~l~~~~~~---~~~~~~ 236 (702)
.....++++|...+|++++.++. |..||+.+++.+..+...... .....+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788898999999988764 999999999998888753110 001122
Q ss_pred eEEEEEcCCCCC---EEEEEeCCCeEEEEEcCCCeEEEEeeccC-----------CC-----------------------
Q 005325 237 VTALEFDSNGGF---LMGVGSSTGKVLIYDLRSSYPIRVKDHMF-----------DS----------------------- 279 (702)
Q Consensus 237 Vtslafspd~g~---~LasGs~DG~V~lwDlrs~~~l~~~~h~~-----------~~----------------------- 279 (702)
+.......+ |. .|++++.+|.|+++|..+++++....... +.
T Consensus 307 ~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 307 MILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp EEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred cEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 333333334 65 78899999999999999999874211100 00
Q ss_pred ----CeEEEEEeeccCCCCCeEEEeC---------------------------------------------CCEEEEEeC
Q 005325 280 ----PIVDIKWHQSINTERPKLITTD---------------------------------------------NHIVRIWDP 310 (702)
Q Consensus 280 ----~I~sl~fsp~~~~~~~ll~ss~---------------------------------------------Dg~V~IWd~ 310 (702)
.-..++|+| ..+.+++.+. ++.|..||+
T Consensus 386 ~Gg~~w~~~a~dp---~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 386 WGAHDWQPMSYNP---DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp TCSSCSSCCEEET---TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred ccccCCCcceECC---CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 011256666 2222222211 378999999
Q ss_pred CCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 311 ETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 311 ~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+|+.+..+.. ..++..-.+...++++++++.++.++.|....
T Consensus 463 ~tG~~~W~~~~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 463 VKQQAAWEVPY-VTIFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp TTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCeEeEccC-CCCccCccceECCCEEEEECCCCcEEEEECCC
Confidence 99999998876 34445446777889999999999999987654
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.88 E-value=4e-07 Score=106.31 Aligned_cols=236 Identities=12% Similarity=0.041 Sum_probs=145.8
Q ss_pred CceeEEEECCCCCEEEEEEecC----CcEEEEEcCCceEEEeeecCCce-EEEEEEcCCCCEEEEEECCCe---------
Q 005325 63 TATTKIRETPDGEFLIVSGIYP----PQVKVYELRQLSLKFERHLDSEI-INFEVLADDYSKLAFLCADRS--------- 128 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~d----g~I~vwdl~~~~~~~~~h~~~~v-v~~~~ls~dg~~Las~s~D~~--------- 128 (702)
..+..++|||||++|+.+.+.. ..|++||+.+....-. +... + .....++ |++.|+.++.+..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~-~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD-VKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE-EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC-ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 4678899999999965554433 4699999988443211 1111 1 1233466 8899999988743
Q ss_pred ----EEEEecCCce----EEEecCC----CccceEEecCCCcEEEEec----CCCEEEEECCCCe-EEEEeecCCCCeEE
Q 005325 129 ----ISLHAKYGKH----YSLRIPR----MGRDMAYNSWSCDLLCAAS----SPELYRINLEQGR-FLSSLNTQSPALNV 191 (702)
Q Consensus 129 ----I~iw~~~g~~----~~~~i~~----~~~~l~~~~~s~~llv~s~----d~~V~vwdl~~g~-~~~~l~~h~~~V~~ 191 (702)
|.+|++.... .....+. ....+.+.+....|++... .+.|+++|+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 8899876321 2222222 1225566666665655443 2479999998763 34456666665555
Q ss_pred EEEcCCCCEEEEEE-cC---CeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-CC--eEEEE
Q 005325 192 VSRSKLHGLIACGG-ED---GAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-TG--KVLIY 262 (702)
Q Consensus 192 l~~sp~~~llasgs-~D---G~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-DG--~V~lw 262 (702)
. |++++..|+..+ .+ +.|..||+.++.. ...+..+ ...+. .|+++ +..|+.... +| .|.+|
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~--~~s~~-g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE------RQQVL--TVHSG-SGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC------CSSCE--EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC------CCCEE--EEEEE-CCEEEEEEEECCeeEEEEE
Confidence 5 566665554444 33 6899999987654 3455544 23443 88888 777776654 44 68999
Q ss_pred EcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCC----CEEEEEeCCCCce
Q 005325 263 DLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDN----HIVRIWDPETGES 315 (702)
Q Consensus 263 Dlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D----g~V~IWd~~tg~~ 315 (702)
|+..+....+... ....|..+.++| ++..++++..+ +.|..||+.+++.
T Consensus 356 d~~g~~~~~l~~p-~~~~~~~~~~~~---d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGKRVREVALP-GLGSVSGFNGKH---DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSCEEEEECCS-SSSEEEECCCCT---TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCCeeEEeecC-CCceEEeeecCC---CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9886554333221 134566677765 45556655443 8999999988764
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.83 E-value=2.2e-09 Score=115.71 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=105.0
Q ss_pred CCCEEEEEECCCeEEEEecC-CceE-EEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCC-eE-E
Q 005325 116 DYSKLAFLCADRSISLHAKY-GKHY-SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPA-LN-V 191 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~-g~~~-~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~-V~-~ 191 (702)
++..+++++.|+.|..|+.. |... .+.. ....+.........+++++.++.|+.||..+|+.+..+..+... +. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 45788999999999999976 5433 2332 22122222222223444578899999999999877666443211 10 0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 192 VSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 192 l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
..+. .+..|++|+.++.|.+||..+++.+..+..+ . .+.++|+ +..|++++.++.|..||.++++.++
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------~---~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------F---ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------C---ccccccc-CCEEEEEecCCEEEEEECCCCCEEE
Confidence 0111 3457788889999999999999988877765 1 2345677 8889999999999999999988765
Q ss_pred EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeE
Q 005325 272 VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKIND 328 (702)
Q Consensus 272 ~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~ 328 (702)
..... .....++.+....++.+++++.++.|..||..+|+.+..... ..++..
T Consensus 155 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 155 NATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA 207 (369)
T ss_dssp EEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred eEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence 32210 011122221000126678888899999999999999888775 455543
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=1.8e-05 Score=80.23 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=150.6
Q ss_pred CCEEEEEEecCCcEEEEEcCCceE------EEeeecCCceEEEEEEcCCCCEEEEEE-CCCeEEEEecCCceEEEecC--
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSL------KFERHLDSEIINFEVLADDYSKLAFLC-ADRSISLHAKYGKHYSLRIP-- 144 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~------~~~~h~~~~vv~~~~ls~dg~~Las~s-~D~~I~iw~~~g~~~~~~i~-- 144 (702)
|++|+.+.. +.|+.+++..... ........ -...+.+++++..|..+. ..+.|..++..+......++
T Consensus 1 ~~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~-~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAK-VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp CEEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEE-EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred CcEEEEEcC--CeEEEEEecCcccccccceeeecCCCC-cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence 345444432 4788888876321 11111011 133455666556665544 47889999988654333332
Q ss_pred -CCccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEECCCCc
Q 005325 145 -RMGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE---DGAVECFDMRMRS 219 (702)
Q Consensus 145 -~~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~---DG~V~iWD~~t~~ 219 (702)
.....+++.+.+..++++... +.|.++++........+.......+.++++|++..|..+.. .+.|..+++.. .
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T 156 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence 233478888777788877654 57999998653322222222346789999997655544443 47898888864 3
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEE
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLM-GVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLI 298 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~L-asGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ 298 (702)
....+... .-.....|+++|+ +..| ++-...+.|.++|+.......+... ......|+.. ++.+++
T Consensus 157 ~~~~~~~~-----~~~~P~gia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~d-----~~~lyv 223 (267)
T 1npe_A 157 NRRILAQD-----NLGLPNGLTFDAF-SSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSY-----GKNLYY 223 (267)
T ss_dssp CCEEEECT-----TCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEEE-----TTEEEE
T ss_pred CcEEEEEC-----CCCCCcEEEEcCC-CCEEEEEECCCCEEEEEecCCCceEEEecC--CCCceEEEEe-----CCEEEE
Confidence 33333211 0246789999998 5555 5555678999999976544333322 2233567654 456666
Q ss_pred Ee-CCCEEEEEeCCCCceeEEecCCCC-ceeEEEEEcCCC
Q 005325 299 TT-DNHIVRIWDPETGESMTSIEPTAG-KINDVCVFKDSG 336 (702)
Q Consensus 299 ss-~Dg~V~IWd~~tg~~l~~i~~h~~-~I~~v~~~p~~~ 336 (702)
+. ..+.|.++|..+++.+..+..... ....|++.|++.
T Consensus 224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 55 578999999999999999876332 467888888764
No 234
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=1.6e-06 Score=98.84 Aligned_cols=257 Identities=9% Similarity=0.056 Sum_probs=153.6
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCC-----ceEEEEEEcCCCCEEEEEEC------CCeEEEEecC-CceE-E
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDS-----EIINFEVLADDYSKLAFLCA------DRSISLHAKY-GKHY-S 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~-----~vv~~~~ls~dg~~Las~s~------D~~I~iw~~~-g~~~-~ 140 (702)
+.. ++.++.++.|..+|..+....+...... .+...-.+. + ..+++++. ++.|..++.. |... .
T Consensus 115 ~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTE-EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 445 5677889999999998865544433221 111111112 3 35555544 7888888876 4332 2
Q ss_pred EecCCCc---------------------------------------cceEEecCCCcEEEEecC----------------
Q 005325 141 LRIPRMG---------------------------------------RDMAYNSWSCDLLCAASS---------------- 165 (702)
Q Consensus 141 ~~i~~~~---------------------------------------~~l~~~~~s~~llv~s~d---------------- 165 (702)
+...... ..+++.+....++++..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 2221110 124555555566766542
Q ss_pred CCEEEEECCCCeEEEEeecCC---------CCeEEEEEcCCC---CEEEEEEcCCeEEEEECCCCcceeEEecccCCC--
Q 005325 166 PELYRINLEQGRFLSSLNTQS---------PALNVVSRSKLH---GLIACGGEDGAVECFDMRMRSSAARINAVAPAG-- 231 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~---------~~V~~l~~sp~~---~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~-- 231 (702)
+.|+.+|+.+|+.+..++... .....+...+++ .+++.++.+|.|.++|..+++.+..+.......
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 249999999999988876421 111122233456 367888999999999999999887765431000
Q ss_pred -----CCCCCe--------------------------EEEEEcCCCCCEEEEEe--------------------------
Q 005325 232 -----DADQEV--------------------------TALEFDSNGGFLMGVGS-------------------------- 254 (702)
Q Consensus 232 -----~~~~~V--------------------------tslafspd~g~~LasGs-------------------------- 254 (702)
....+| ..++|+|+ ..+|++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE-SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC-CCEEEEEchhccccccccccccccCCccccccce
Confidence 000111 34688888 56666543
Q ss_pred -----------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCC
Q 005325 255 -----------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTA 323 (702)
Q Consensus 255 -----------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~ 323 (702)
.+|.|..||+.+++.+....+ ..++.+..+.. .++.+++++.|+.|++||..+|+.+..+....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t---~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYT---KGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEE---CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 357899999999998875544 23333332221 25667777789999999999999999887632
Q ss_pred Cc-eeEEEEEcCCCEEE
Q 005325 324 GK-INDVCVFKDSGLLL 339 (702)
Q Consensus 324 ~~-I~~v~~~p~~~~l~ 339 (702)
.. -..+.+..++.+++
T Consensus 506 ~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcEeeeEEEEECCEEEE
Confidence 21 12233445554333
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=2.9e-06 Score=98.55 Aligned_cols=283 Identities=10% Similarity=0.081 Sum_probs=171.1
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecC-----CceEEEEEEcCCCCEEEEEEC------CCeEEEEecC-CceE-E
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLD-----SEIINFEVLADDYSKLAFLCA------DRSISLHAKY-GKHY-S 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~-----~~vv~~~~ls~dg~~Las~s~------D~~I~iw~~~-g~~~-~ 140 (702)
+.. ++.++.++.|..+|..+....+..... ..+...-.+. + ..+++++. ++.|..+|.. |... .
T Consensus 117 ~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDK-VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTE-EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCE-EEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 445 577788999999999886554443321 1111111111 3 34444432 5788888876 4332 2
Q ss_pred Eec-CCC----------------------------c---cceEEecCCCcEEEEecCC-------------------CEE
Q 005325 141 LRI-PRM----------------------------G---RDMAYNSWSCDLLCAASSP-------------------ELY 169 (702)
Q Consensus 141 ~~i-~~~----------------------------~---~~l~~~~~s~~llv~s~d~-------------------~V~ 169 (702)
+.. +.. + ..+++.+....+++++.++ .|+
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 222 110 0 0346666666677776654 399
Q ss_pred EEECCCCeEEEEeecC--C-------CCeEEEEEcCCCC---EEEEEEcCCeEEEEECCCCcceeEEecccCC-----C-
Q 005325 170 RINLEQGRFLSSLNTQ--S-------PALNVVSRSKLHG---LIACGGEDGAVECFDMRMRSSAARINAVAPA-----G- 231 (702)
Q Consensus 170 vwdl~~g~~~~~l~~h--~-------~~V~~l~~sp~~~---llasgs~DG~V~iWD~~t~~~v~~l~~~~~~-----~- 231 (702)
.+|+.+|+.+..++.. . ..+....+..++. ++++++.+|.|.++|..+++.+..+...... .
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999887652 2 2233333333553 7889999999999999999987554332100 0
Q ss_pred CCCC------------------------CeEEEEEcCCCCCEEEEEe---------------------------------
Q 005325 232 DADQ------------------------EVTALEFDSNGGFLMGVGS--------------------------------- 254 (702)
Q Consensus 232 ~~~~------------------------~Vtslafspd~g~~LasGs--------------------------------- 254 (702)
.... .-..++++|+ ..++.+..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG-TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCC-CCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0000 0113678887 55554421
Q ss_pred ---CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCce-eEEE
Q 005325 255 ---STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKI-NDVC 330 (702)
Q Consensus 255 ---~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I-~~v~ 330 (702)
.+|.|..||+.+++.+....+ ..++....+.. .++.+++++.|+.|++||..+|+.+..+....... .-+.
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t---~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~ 507 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT 507 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEe---CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence 238899999999998875444 33444334443 35666777789999999999999999887633211 2344
Q ss_pred EEcCCCE-EEEEeC--------------------CCcEEEEEcCCCCCCCCccCcc
Q 005325 331 VFKDSGL-LLLALD--------------------CSQIPSYFIPDLGPTPKWCSPI 365 (702)
Q Consensus 331 ~~p~~~~-l~~a~~--------------------d~~I~~~~ip~lg~ap~Wcsfl 365 (702)
+..++.+ ++++.. .+.|.+|-++..+..|.|...+
T Consensus 508 ~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~p~~~~~~ 563 (668)
T 1kv9_A 508 FELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPPPAPAP 563 (668)
T ss_dssp EEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCCCCCCCC
T ss_pred EEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCccCCCCCCcccc
Confidence 4445543 333332 3478899998888888875443
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.77 E-value=2.6e-07 Score=99.22 Aligned_cols=258 Identities=9% Similarity=-0.090 Sum_probs=165.0
Q ss_pred CCCEEEEEEecCC----cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE----------CCCeEEEEecCCce
Q 005325 73 DGEFLIVSGIYPP----QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC----------ADRSISLHAKYGKH 138 (702)
Q Consensus 73 DG~~llatGs~dg----~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s----------~D~~I~iw~~~g~~ 138 (702)
+...++++-..++ .|.++|..+....-.-...... -+.++||+++++.+. .+++|.+||.....
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 4455566666555 8889999986654333333444 477999999998876 37899999998433
Q ss_pred --EEEecC--------CCccceEEecCCCcEEEEec--CCCEEE--EECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEE
Q 005325 139 --YSLRIP--------RMGRDMAYNSWSCDLLCAAS--SPELYR--INLEQGRFLSSLNTQSPALNVVSRSKLH-GLIAC 203 (702)
Q Consensus 139 --~~~~i~--------~~~~~l~~~~~s~~llv~s~--d~~V~v--wdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llas 203 (702)
..+.++ .....+.+.+....++++.. ++.|.+ +|+.+ +..+.... |+.+.|++ ..+++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~g~~~~~~ 180 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPGAAATHYL 180 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEEETTEEEC
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccCCCeEEEE
Confidence 334444 23458999999999999875 356888 89877 44443211 12233444 45666
Q ss_pred EEcCCeEEEEECCC-----CcceeE----EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-
Q 005325 204 GGEDGAVECFDMRM-----RSSAAR----INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK- 273 (702)
Q Consensus 204 gs~DG~V~iWD~~t-----~~~v~~----l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~- 273 (702)
.+.||.+.+.|+.+ ++.+.. +... ..+. + +++ +..++..+. +.|.+.|+.+.....+.
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg------~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS------SQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC------SCCE---E-ETT-TTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred EcCCCCEEEEECccccccCCeEEEEeeeeeeCC------CCcc---c-ccc-CCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 77789998899886 333211 1111 2343 3 566 555555556 99999999764321111
Q ss_pred -e--------cc-CCCCeEEEEEeeccCCCCCeEEEeC---------CCEEEEEeCCCCceeEEecCCCCceeEEEEEcC
Q 005325 274 -D--------HM-FDSPIVDIKWHQSINTERPKLITTD---------NHIVRIWDPETGESMTSIEPTAGKINDVCVFKD 334 (702)
Q Consensus 274 -~--------h~-~~~~I~sl~fsp~~~~~~~ll~ss~---------Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~ 334 (702)
. +. .......++|+| ++..++++.. +..+.+||+.+++.+..|.. ......|+|+|+
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~---dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~D 324 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLK---NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQD 324 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEET---TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCS
T ss_pred EEeccccccccccccCcceeeEEcC---CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCC
Confidence 0 00 001112267887 4555665533 23566999999999998887 557899999999
Q ss_pred CCE-EEEEe-CCCcEEEEEcCCC
Q 005325 335 SGL-LLLAL-DCSQIPSYFIPDL 355 (702)
Q Consensus 335 ~~~-l~~a~-~d~~I~~~~ip~l 355 (702)
+.. ++++. .++.|.++.+..+
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSC
T ss_pred CCEEEEEccCCCCeEEEEECCCC
Confidence 875 55555 4899999986553
No 237
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=9.6e-06 Score=92.54 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=106.3
Q ss_pred CCEEEEECCCCeEEEEeec--CC-------CCeEEEEEc-CCC---CEEEEEEcCCeEEEEECCCCcceeEEecccCC--
Q 005325 166 PELYRINLEQGRFLSSLNT--QS-------PALNVVSRS-KLH---GLIACGGEDGAVECFDMRMRSSAARINAVAPA-- 230 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~--h~-------~~V~~l~~s-p~~---~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~-- 230 (702)
+.|+.+|+.+|+.+..++. |. ....-+... .++ .+++.++.+|.|.++|..+++.+..+......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 4699999999999988764 21 111112222 456 47888999999999999999988776554100
Q ss_pred -----------------C---------CCC-----------CCeEEEEEcCCCCCEEEEEe-------------------
Q 005325 231 -----------------G---------DAD-----------QEVTALEFDSNGGFLMGVGS------------------- 254 (702)
Q Consensus 231 -----------------~---------~~~-----------~~Vtslafspd~g~~LasGs------------------- 254 (702)
. ... ..-..++++|+ ..++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQD-TGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTT-TCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCC-CCEEEEechhcceeeecccccccCCCc
Confidence 0 000 00124677877 33443322
Q ss_pred --------------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 255 --------------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 255 --------------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
.+|.|..||+.+++.+....+ ..++..-.... .++.+++++.|+.|+.||..+|+.+..+.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~t---agglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HLPLWAGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SSCCCSCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CCCCcccceEe---CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 268899999999998875444 22332211121 25667777789999999999999999887
Q ss_pred CCCCcee--EEEEEcCCCEEE
Q 005325 321 PTAGKIN--DVCVFKDSGLLL 339 (702)
Q Consensus 321 ~h~~~I~--~v~~~p~~~~l~ 339 (702)
. ...+. -+.+..++...+
T Consensus 525 ~-~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 525 T-GSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp C-SSCCCSCCEEEEETTEEEE
T ss_pred C-CCCcccCceEEEECCEEEE
Confidence 7 44333 256656665333
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.73 E-value=3.2e-06 Score=86.28 Aligned_cols=212 Identities=11% Similarity=0.018 Sum_probs=142.2
Q ss_pred ceeeeecccCCCc--eeEEEECCCCCEEEEEEe-c-CCcEEEEEcCCceEEEeeecCCc-eEEEEEEcCCCCEEEEE-EC
Q 005325 52 RVELIQDLWFETA--TTKIRETPDGEFLIVSGI-Y-PPQVKVYELRQLSLKFERHLDSE-IINFEVLADDYSKLAFL-CA 125 (702)
Q Consensus 52 rieliqd~~~~~~--v~~i~~SpDG~~llatGs-~-dg~I~vwdl~~~~~~~~~h~~~~-vv~~~~ls~dg~~Las~-s~ 125 (702)
..+++..+.|+.. ...+.|+|||.. +++.+ + ++.|.++|+.+....-....... ....+.+. +..|..+ -.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~L-yvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTL-FESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEE-EEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeE-EEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 4567888888864 579999999744 55443 2 57999999998554332222221 11122222 3455444 45
Q ss_pred CCeEEEEecCCceEEEecCCC-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCCCC
Q 005325 126 DRSISLHAKYGKHYSLRIPRM-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKLHG 199 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~~i~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~~~ 199 (702)
++.|.++|.......-.++.. +..+...+....++++..++.|+++|..+.+.+..+.... ..++.+.|. ++.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 889999998743333334322 3344455566778888878889999999999888776432 247888888 676
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEeccc-------CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVA-------PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~-------~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
+++....++.|.+.|+.+++.+..+.... .........+.|+|+|++...++++...+.|.+.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 66665568999999999999999998641 000112466899999993445667778899999888653
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.70 E-value=9.7e-07 Score=93.61 Aligned_cols=229 Identities=7% Similarity=0.003 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCEEEEEEC--CCeEEEEec-CCceEEEecCC----------CccceEEecCCCcEEEEec------CCCE
Q 005325 108 INFEVLADDYSKLAFLCA--DRSISLHAK-YGKHYSLRIPR----------MGRDMAYNSWSCDLLCAAS------SPEL 168 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~--D~~I~iw~~-~g~~~~~~i~~----------~~~~l~~~~~s~~llv~s~------d~~V 168 (702)
..-+.+++++..+++... ++.+.||.+ .+... .+|. ....+.+.+. ..|+++.. ...|
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeE
Confidence 455567788888777542 332444443 34322 2221 1125555554 44777664 4689
Q ss_pred EEEECCCCeEEEEeecC------CCCeEEEEEcCCC-CEEEEEE---cCCeEEEEECCCCcceeEEecccCCC-------
Q 005325 169 YRINLEQGRFLSSLNTQ------SPALNVVSRSKLH-GLIACGG---EDGAVECFDMRMRSSAARINAVAPAG------- 231 (702)
Q Consensus 169 ~vwdl~~g~~~~~l~~h------~~~V~~l~~sp~~-~llasgs---~DG~V~iWD~~t~~~v~~l~~~~~~~------- 231 (702)
.+||+.+++.+..+..+ ...++.++++|++ .++++.+ .++.|.+||+.+++....+..+....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999987776543 2357899999865 4455555 67899999998877655543320000
Q ss_pred --C--------------CCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcC---CCe--------EEEEeeccCCCCeEE
Q 005325 232 --D--------------ADQEVTALEFDSNGGFLMGVGSSTG-KVLIYDLR---SSY--------PIRVKDHMFDSPIVD 283 (702)
Q Consensus 232 --~--------------~~~~Vtslafspd~g~~LasGs~DG-~V~lwDlr---s~~--------~l~~~~h~~~~~I~s 283 (702)
+ ....+..|+|+|+ |..|+++..++ .|..++.. .+. .+...++ ......
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~--~g~pdg 252 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE--KPICDG 252 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE--CCSCSC
T ss_pred ECCEEEEeccCCCceeceecccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc--CCCCce
Confidence 0 0124688999999 88888877766 55555532 110 0111222 224567
Q ss_pred EEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 284 IKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
|++++ ++.++++. .++.|.+||..+|+....+.. +.....+|+|.+++.++++++....
T Consensus 253 ia~d~----~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 253 ISIDK----DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp EEECT----TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred EEECC----CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 89986 45566555 688999999866764433322 2346889999998776666655433
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.69 E-value=2.3e-05 Score=89.51 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=148.9
Q ss_pred EEEEecCCcEEEEEcCCceEEEeeecCC-----ceEEEEEEcCCCCEEEEEE------CCCeEEEEecC-CceE-EEecC
Q 005325 78 IVSGIYPPQVKVYELRQLSLKFERHLDS-----EIINFEVLADDYSKLAFLC------ADRSISLHAKY-GKHY-SLRIP 144 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~~~~~h~~~-----~vv~~~~ls~dg~~Las~s------~D~~I~iw~~~-g~~~-~~~i~ 144 (702)
|+.++.++.|..+|..+....+...... .+...-.+. + ..+++++ .++.|..++.. |... .....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 4567789999999998855544433221 111111122 3 3444444 37888888876 4332 22221
Q ss_pred CCc---------------------------------------cceEEecCCCcEEEEecC----------------CCEE
Q 005325 145 RMG---------------------------------------RDMAYNSWSCDLLCAASS----------------PELY 169 (702)
Q Consensus 145 ~~~---------------------------------------~~l~~~~~s~~llv~s~d----------------~~V~ 169 (702)
... ..+++.+....++++..+ +.|+
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 110 023455555567777655 3799
Q ss_pred EEECCCCeEEEEeecCCC---------CeEEEEEc-CCC---CEEEEEEcCCeEEEEECCCCcceeEEecccCC------
Q 005325 170 RINLEQGRFLSSLNTQSP---------ALNVVSRS-KLH---GLIACGGEDGAVECFDMRMRSSAARINAVAPA------ 230 (702)
Q Consensus 170 vwdl~~g~~~~~l~~h~~---------~V~~l~~s-p~~---~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~------ 230 (702)
.+|+.+|+.+..++.... ...-+... .++ .+++.++.+|.|.++|..+++.+.........
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 999999999888765321 11122332 456 57888899999999999999988776532100
Q ss_pred C-CCCCC--------------------------eEEEEEcCCCCCEEEEEe-----------------------------
Q 005325 231 G-DADQE--------------------------VTALEFDSNGGFLMGVGS----------------------------- 254 (702)
Q Consensus 231 ~-~~~~~--------------------------Vtslafspd~g~~LasGs----------------------------- 254 (702)
. ....+ -..++|+|+ ..+|++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK-RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC-CCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 0 00001 124677777 44544321
Q ss_pred ----------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCC
Q 005325 255 ----------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAG 324 (702)
Q Consensus 255 ----------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~ 324 (702)
..|.|..||+.+++.+....+ ..++..-.... .++.+++++.|+.|+.||..+|+.+..+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecC--CCCccCcceEe---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 347899999999998875544 22332211111 256677777899999999999999998865332
Q ss_pred ce-eEEEEEcCCC
Q 005325 325 KI-NDVCVFKDSG 336 (702)
Q Consensus 325 ~I-~~v~~~p~~~ 336 (702)
.+ .-+.+..++.
T Consensus 516 ~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 516 AIGYPMTYTHKGT 528 (599)
T ss_dssp CCSCCEEEEETTE
T ss_pred cEeccEEEEeCCE
Confidence 22 2344545554
No 241
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.61 E-value=2.4e-06 Score=88.74 Aligned_cols=187 Identities=9% Similarity=-0.035 Sum_probs=119.3
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCc---eEEEEEEcCCCCEEEE----EEC---------
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSE---IINFEVLADDYSKLAF----LCA--------- 125 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~---vv~~~~ls~dg~~Las----~s~--------- 125 (702)
...++.++++++|+. +++....+.|.+|+.......+..+.... ....+.++++|..+++ +..
T Consensus 85 ~~~~~gl~~d~dG~l-~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRL-VHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCccceeeECCCCCE-EEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 355789999999996 56555567899999864222222221110 1223557788887775 221
Q ss_pred ----CCeEEEEecC-CceEEEecCCCccceEEecCCCcEEEEecC------CCEEEEECCCCeEE--EEe-ecCCCCeEE
Q 005325 126 ----DRSISLHAKY-GKHYSLRIPRMGRDMAYNSWSCDLLCAASS------PELYRINLEQGRFL--SSL-NTQSPALNV 191 (702)
Q Consensus 126 ----D~~I~iw~~~-g~~~~~~i~~~~~~l~~~~~s~~llv~s~d------~~V~vwdl~~g~~~--~~l-~~h~~~V~~ 191 (702)
.+.|..++.. +....+........+++.+....|+++... +.|++|++..+... ..+ ......+..
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg 243 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG 243 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred cccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence 2456777764 443333211223367888877778888775 67999998765421 111 112334567
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 192 VSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 192 l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
+++.+++++.++. .+ .|.+||. .++.+..+..+ ..+++++|+|+ +..|++++.++..+
T Consensus 244 i~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~-------~~~~~~~f~~d-~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 244 FCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTP-------GTASNCTFDQA-QQRLFITGGPCLWM 301 (305)
T ss_dssp EEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECS-------SCCCEEEECTT-SCEEEEEETTEEEE
T ss_pred EEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECC-------CceeEEEEeCC-CCEEEEEcCCeEEE
Confidence 8899999965554 44 5999999 57777888776 36899999988 88888888765433
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.60 E-value=0.00023 Score=84.18 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=168.3
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeec-------CCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHL-------DSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~-------~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
..|.+|...++|.+ ..|+...-|.+|+..+.......+. ....+..+...+++... .++.+ -|.+|+..
T Consensus 215 ~~i~~i~~d~~g~l--wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 215 KQIQAILQQSPTRI--WVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCEEEEEEEETTEE--EEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CeeEEEEEcCCCCE--EEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 45788888888876 3345555588999877443322221 12335555566666544 44555 57788876
Q ss_pred Cce-EEEecCC--------C-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee------cCCCCeEEEEEcCCCC
Q 005325 136 GKH-YSLRIPR--------M-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN------TQSPALNVVSRSKLHG 199 (702)
Q Consensus 136 g~~-~~~~i~~--------~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~------~h~~~V~~l~~sp~~~ 199 (702)
... ..+.... . ..++ +......+.+++.++.|.+|+..++.+..-.. .....|.++...+++.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i-~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSI-FMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEE-EECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEE-EEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 433 2222111 0 1122 22345569999998999999987665432211 1234699999888776
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEeccc-C-C-CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVA-P-A-GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH- 275 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~-~-~-~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h- 275 (702)
+. .|+.++-|.+||..++.... +.... . . .-....|.+|+..++ |..|.+|+.++-|.+||..+++...+...
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEK-KSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp EE-EEESSSCEEEECTTTCCEEE-ECCC------CCSCSCEEEEEEETT-TTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred EE-EEECCCCeEEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCC-CCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 54 57887789999988765332 22110 0 0 011367999999988 77688888888899999988775544321
Q ss_pred --cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC-------CCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 276 --MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP-------TAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 276 --~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~-------h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
.....|.+|...+ .+.+.+++. +-|.+||..+++.. .+.. +...|.+++..+++. |.+++. +.
T Consensus 447 ~~l~~~~v~~i~~d~----~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~G 518 (795)
T 4a2l_A 447 SQLVNENVYAILPDG----EGNLWLGTL-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EG 518 (795)
T ss_dssp SCCSCSCEEEEEECS----SSCEEEEES-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SC
T ss_pred CCcCCCeeEEEEECC----CCCEEEEec-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEEEeC-Cc
Confidence 1235688888775 667777776 45889998876543 2221 235788888777766 555555 44
Q ss_pred EEEEE
Q 005325 347 IPSYF 351 (702)
Q Consensus 347 I~~~~ 351 (702)
+..|.
T Consensus 519 l~~~~ 523 (795)
T 4a2l_A 519 LSVFK 523 (795)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 65554
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=6e-06 Score=83.51 Aligned_cols=196 Identities=11% Similarity=0.038 Sum_probs=131.5
Q ss_pred ceeeeecccCCCce--eEEEECCCCCEEEEEEecCC--cEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE-CC
Q 005325 52 RVELIQDLWFETAT--TKIRETPDGEFLIVSGIYPP--QVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC-AD 126 (702)
Q Consensus 52 rieliqd~~~~~~v--~~i~~SpDG~~llatGs~dg--~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s-~D 126 (702)
..++++.+.|.... ..+.|+ ++.. +.+.+.++ .|+++|+.+....-....+...... -+..++..|..+. .+
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~-~~~L-yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~g~~ly~ltw~~ 106 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYR-NGYF-YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE-GISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEE-TTEE-EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-EEEEETTEEEEEESSS
T ss_pred ceEEEEEecCCCCcccceEEEE-CCEE-EEECCCCCCceEEEEECCCCcEEEEEecCCcccee-EEEEeCCEEEEEEeeC
Confidence 46788888887665 889998 6654 55555544 8999999985554333333332221 1112345665554 48
Q ss_pred CeEEEEecCCc--eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCCCC
Q 005325 127 RSISLHAKYGK--HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKLHG 199 (702)
Q Consensus 127 ~~I~iw~~~g~--~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~~~ 199 (702)
+.+.++|.... ...+..+..+..++ +....|+++..++.|+++|..+.+.+..+.... ..++.+.|. ++.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 89999998743 33444455444555 445668777777889999999999988876532 356778887 676
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCC------CCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPA------GDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~------~~~~~~Vtslafspd~g~~LasGs 254 (702)
+++..-.+..|.+.|+.+++.+..+....-. .....-.+.|||+|+ +..|++.+
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~-~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE-HHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT-TTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC-CCEEEEEC
Confidence 6666656889999999999999999875110 111246689999999 66655544
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=0.00025 Score=83.81 Aligned_cols=270 Identities=10% Similarity=0.061 Sum_probs=169.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee-------cCCceEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH-------LDSEIINFEVLADDYSKLAFLCADRSISLHAKY 135 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h-------~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~ 135 (702)
..|.+|...++|.. ..|+.. -|.+|+..+.......+ .....+..++...+|. |-.++.++-|.+++..
T Consensus 263 ~~i~~i~~d~~g~l--Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 263 NYIRSLAMDSQNRL--WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp SBEEEEEECTTSCE--EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CeEEEEEEcCCCCE--EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 56899999999987 344555 58889987754432221 1123355666666655 5556676778888765
Q ss_pred C-ceEEEecCC-----Ccc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee--------cCCCCeEEEEEcCCC
Q 005325 136 G-KHYSLRIPR-----MGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN--------TQSPALNVVSRSKLH 198 (702)
Q Consensus 136 g-~~~~~~i~~-----~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~--------~h~~~V~~l~~sp~~ 198 (702)
. ....+.... ... ++. ......|.+++.++.|.+||..++.+..-.. .....|.+++..+++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~-~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIV-EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEE-ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEE-ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 3 222222111 111 222 2234569999988899999999887654321 123579999998888
Q ss_pred CEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee----
Q 005325 199 GLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD---- 274 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~---- 274 (702)
.+|.+|+.++-|.+||..+++. ..+.... ..-....|.+|...++ |. |.+|+.. -|.+||..+++...+..
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~-~~l~~~~v~~i~~d~~-g~-lwigt~~-Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQV-ENFNQRN-SQLVNENVYAILPDGE-GN-LWLGTLS-ALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCE-EEECTTT-SCCSCSCEEEEEECSS-SC-EEEEESS-CEEEEETTTTEEEECCBCTTC
T ss_pred CEEEEEeCcCceeEEeCCCCcE-EEeecCC-CCcCCCeeEEEEECCC-CC-EEEEecC-ceeEEeCCCCeEEEccccccc
Confidence 8677788878899999987653 3333210 0012467999999887 65 4455554 58889988876554321
Q ss_pred -ccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec-------CCCCceeEEEEEcCCCEEEEEeCCCc
Q 005325 275 -HMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE-------PTAGKINDVCVFKDSGLLLLALDCSQ 346 (702)
Q Consensus 275 -h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~-------~h~~~I~~v~~~p~~~~l~~a~~d~~ 346 (702)
......|.+|...+ .+.+.+++. +-|.+||..++.. .+. .+...|++++..+++. |.+++.. .
T Consensus 493 ~~~~~~~i~~i~~d~----~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-G 563 (795)
T 4a2l_A 493 TPVVSKQITTLFRDS----HKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-G 563 (795)
T ss_dssp CBCCCCCEEEEEECT----TCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-C
T ss_pred cccCCceEEEEEECC----CCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-C
Confidence 11135788998875 666777776 5588899877665 332 1234688887777766 5555555 4
Q ss_pred EEEEE
Q 005325 347 IPSYF 351 (702)
Q Consensus 347 I~~~~ 351 (702)
+..|.
T Consensus 564 l~~~d 568 (795)
T 4a2l_A 564 FYCFN 568 (795)
T ss_dssp EEEEE
T ss_pred ceeEC
Confidence 55554
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.58 E-value=9.9e-07 Score=99.00 Aligned_cols=238 Identities=11% Similarity=0.022 Sum_probs=142.9
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceEEE--eeecCCceEEEEEEc-CCCCEEEEEECCCeEEEEecCCceEEEecCCCcc
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSLKF--ERHLDSEIINFEVLA-DDYSKLAFLCADRSISLHAKYGKHYSLRIPRMGR 148 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~~~--~~h~~~~vv~~~~ls-~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~~ 148 (702)
+||++++++...++.|.+.|+.+....- .-.....+..+.+.+ |++.+++.++.... .++..+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~-------------p~~~dg~ 165 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-------------PLVNDGT 165 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-------------ESSCSSS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc-------------ccCCCCc
Confidence 4999988888888899999999955422 222223355566557 89899877753211 0011110
Q ss_pred ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC---------------------
Q 005325 149 DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED--------------------- 207 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D--------------------- 207 (702)
.+.. + --.++.+.++|.++.+.+..+.... ...-++++|++.++++.+.+
T Consensus 166 ~l~~-~-------~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~ 236 (595)
T 1fwx_A 166 NMED-V-------ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF 236 (595)
T ss_dssp STTC-G-------GGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred cccc-c-------cccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence 0000 0 0001123334444444444333211 12233344444444444422
Q ss_pred -----------------CeEEEEECCC--Ccc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC
Q 005325 208 -----------------GAVECFDMRM--RSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRS 266 (702)
Q Consensus 208 -----------------G~V~iWD~~t--~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs 266 (702)
+.|.+.|.++ ++. +..+... ....++.++|| |.+++++ ..+.+|.+||+.+
T Consensus 237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPD-Gk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPD-KKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTT-SSEEEEECTTSSBEEEEEGGG
T ss_pred eccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCC-CCEEEEeCCCCCeEEEEECcc
Confidence 3588889887 555 5667665 56789999999 8876654 4689999999996
Q ss_pred Ce------------EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC----------CceeEEecCCC
Q 005325 267 SY------------PIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET----------GESMTSIEPTA 323 (702)
Q Consensus 267 ~~------------~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t----------g~~l~~i~~h~ 323 (702)
.+ .+....- +.....++|+| ++++.++. -|+.|.+||+.+ .+.+..+..|-
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~v--G~gP~h~aF~~----dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPEL--GLGPLHTAFDG----RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCBC--CSCEEEEEECT----TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred cccccccccCcccceEEEcCC--CCCcceEEECC----CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 53 2222222 56679999997 44555555 599999999987 56788887765
Q ss_pred Cce-----eEEEEEcCCCEEEEEeCCC
Q 005325 324 GKI-----NDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 324 ~~I-----~~v~~~p~~~~l~~a~~d~ 345 (702)
.+- ..++++|++.+|++++.-.
T Consensus 383 qpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 383 QPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred ccccceeccceEeCCCCCEEEEcCCCC
Confidence 432 1234578999999887644
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.56 E-value=5.5e-05 Score=76.62 Aligned_cols=215 Identities=11% Similarity=0.002 Sum_probs=137.8
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCCceEEEe
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g~~~~~~ 142 (702)
.+..++|++++.+|+++....+.|.++++..............-...+.+++++..|..+ ...+.|.+++..+......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999888878887778999999987633221111111123455567665666544 4567899998886543332
Q ss_pred cC---CCccceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEe-ecCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEE
Q 005325 143 IP---RMGRDMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSL-NTQSPALNVVSRSKLHGLI-ACGGEDGAVECFD 214 (702)
Q Consensus 143 i~---~~~~~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l-~~h~~~V~~l~~sp~~~ll-asgs~DG~V~iWD 214 (702)
++ .....+++.+....|+++... +.|+++++.... ...+ .......+.++++|++..| ++-...+.|.++|
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 32 233478888888888888754 578888876432 2222 2333468899999987554 5555578999999
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEee
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQ 288 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp 288 (702)
+........+... .....|++. . +..+++....+.|.++|..+++.+.............|++.|
T Consensus 196 ~~g~~~~~~~~~~-------~~P~gi~~d-~-~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 196 PAQPGRRKVLEGL-------QYPFAVTSY-G-KNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEEEEECC-------CSEEEEEEE-T-TEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred cCCCceEEEecCC-------CCceEEEEe-C-CEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 9865433333322 344677765 3 455555556789999999998877644331112357788887
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.52 E-value=8.2e-06 Score=82.54 Aligned_cols=197 Identities=12% Similarity=0.085 Sum_probs=133.1
Q ss_pred cccceeeeecccCCCce--eEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEE-EEEEcCCCCEE-EEEE
Q 005325 49 YQRRVELIQDLWFETAT--TKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIIN-FEVLADDYSKL-AFLC 124 (702)
Q Consensus 49 ~~~rieliqd~~~~~~v--~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~-~~~ls~dg~~L-as~s 124 (702)
.....++++.+.|+... ..+.|+ +..|+.+.+.++.|+++|+.+....-.. .+..... -+.+ ++..| +..-
T Consensus 39 ~~~~~~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw 113 (268)
T 3nok_A 39 VRRVAHIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTW 113 (268)
T ss_dssp EEEEEEEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEES
T ss_pred cccceEEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEc
Confidence 34556888988887665 677776 4566788888889999999884332222 2332222 1222 33444 4444
Q ss_pred CCCeEEEEecCCceE--EEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCC
Q 005325 125 ADRSISLHAKYGKHY--SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKL 197 (702)
Q Consensus 125 ~D~~I~iw~~~g~~~--~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~ 197 (702)
.++.+.++|...... .+..+..+..++. ....|+++..++.|+++|..+.+.+..+.... ..++.+.|. +
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred cCCEEEEEECCcCcEEEEEeCCCceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 588999999874333 3444444445554 45568888778889999999999988876532 256788887 6
Q ss_pred CCEEEEEEcCCeEEEEECCCCcceeEEecccC-------CCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 198 HGLIACGGEDGAVECFDMRMRSSAARINAVAP-------AGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~-------~~~~~~~Vtslafspd~g~~LasG 253 (702)
+.+++....+..|.+.|+.+++.+..+....- ......-.+.|||+|+...++++|
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 76666655688999999999999999987510 111234678999999845555555
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=3.3e-05 Score=77.33 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=129.4
Q ss_pred ceeeeecccCCCc--eeEEEECCCCCEEEEEEecC--CcEEEEEcCCceEEEeeecCCceEEE-EEEcCCCCEEE-EEEC
Q 005325 52 RVELIQDLWFETA--TTKIRETPDGEFLIVSGIYP--PQVKVYELRQLSLKFERHLDSEIINF-EVLADDYSKLA-FLCA 125 (702)
Q Consensus 52 rieliqd~~~~~~--v~~i~~SpDG~~llatGs~d--g~I~vwdl~~~~~~~~~h~~~~vv~~-~~ls~dg~~La-s~s~ 125 (702)
..+++..+.|+.. ...+.|++ + .|+.+.+.. ..|+++|+.+....-........... +.+ ++..|. ..-.
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~ 83 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWR 83 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESS
T ss_pred ceEEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEee
Confidence 4578888888755 55888986 4 435555544 58999999985553333323222111 122 234554 4445
Q ss_pred CCeEEEEecCCceEE--EecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCC-----CCeEEEEEcCCC
Q 005325 126 DRSISLHAKYGKHYS--LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQS-----PALNVVSRSKLH 198 (702)
Q Consensus 126 D~~I~iw~~~g~~~~--~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~-----~~V~~l~~sp~~ 198 (702)
++.+.++|....... +..+..+..++ +....|+++..++.|+++|..+.+.+.++.... ..++-+.|. ++
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 889999998754433 44444444444 556678888888899999999999988876632 356778876 66
Q ss_pred CEEEEEEcCCeEEEEECCCCcceeEEecccCC-------CCCCCCeEEEEEcCCCCCEEEEEe
Q 005325 199 GLIACGGEDGAVECFDMRMRSSAARINAVAPA-------GDADQEVTALEFDSNGGFLMGVGS 254 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~-------~~~~~~Vtslafspd~g~~LasGs 254 (702)
.+++....+..|.+.|+.+++.+..+....-. .....-.+.|||+|+ +..|++.+
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~-~~~lfVTG 222 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE-HDRLFVTG 222 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT-TTEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC-CCEEEEEC
Confidence 66666656889999999999999999866211 112346789999998 55554433
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=3.4e-05 Score=80.62 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=140.0
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCc-eEEEecCC---------------------CccceEEecCCCcEEEEecCCCEE
Q 005325 112 VLADDYSKLAFLCADRSISLHAKYGK-HYSLRIPR---------------------MGRDMAYNSWSCDLLCAASSPELY 169 (702)
Q Consensus 112 ~ls~dg~~Las~s~D~~I~iw~~~g~-~~~~~i~~---------------------~~~~l~~~~~s~~llv~s~d~~V~ 169 (702)
++++++..+.+...++.|..|+..+. ...+..+. ....+++.+....|+++...+.|+
T Consensus 25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~ 104 (322)
T 2fp8_A 25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLS 104 (322)
T ss_dssp ECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEE
Confidence 35667676667777888888887653 33232211 123566665466788887777799
Q ss_pred EEECCCCeEEEEeec-----CCCCeEEEEEcC-CCCEEEEEEc-----------------CCeEEEEECCCCcceeEEec
Q 005325 170 RINLEQGRFLSSLNT-----QSPALNVVSRSK-LHGLIACGGE-----------------DGAVECFDMRMRSSAARINA 226 (702)
Q Consensus 170 vwdl~~g~~~~~l~~-----h~~~V~~l~~sp-~~~llasgs~-----------------DG~V~iWD~~t~~~v~~l~~ 226 (702)
++|..++.. ..+.. .....+.+++.| +++++++-.. +|.|..||..++........
T Consensus 105 ~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 183 (322)
T 2fp8_A 105 VVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE 183 (322)
T ss_dssp EECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC
Confidence 999876642 22211 123578999999 8987776532 37799999877654332222
Q ss_pred ccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCC---eEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-C
Q 005325 227 VAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRSS---YPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-D 301 (702)
Q Consensus 227 ~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs~---~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~ 301 (702)
. .....|+|+|+ |..|+++ +..+.|.+|++... ....+... .. ...|++.+ ++.+.++. .
T Consensus 184 ~-------~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~----~G~l~va~~~ 248 (322)
T 2fp8_A 184 L-------HVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIKRNA----DGHFWVSSSE 248 (322)
T ss_dssp E-------SCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEEECT----TSCEEEEEEE
T ss_pred C-------ccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeEECC----CCCEEEEecC
Confidence 2 34567999999 8866655 56689999998752 22222222 22 67888886 45565554 3
Q ss_pred ----------CCEEEEEeCCCCceeEEecCCC----CceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 302 ----------NHIVRIWDPETGESMTSIEPTA----GKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 302 ----------Dg~V~IWd~~tg~~l~~i~~h~----~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+.|.++|.. |+.+..+.... ..+..+++ .++.++++......|..|.+..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 3668888874 78777775432 34666766 3444444444667788876553
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=4.9e-05 Score=88.16 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=167.1
Q ss_pred CCEEEEEEecCCcEEEEEcCCceEEEeeecCCce-----------EEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-E
Q 005325 74 GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEI-----------INFEVLADDYSKLAFLCADRSISLHAKY-GKHY-S 140 (702)
Q Consensus 74 G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~v-----------v~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~ 140 (702)
+.. |++++.++.|..+|..+....+........ .....+ ++..+++++.|+.|..+|.. |... .
T Consensus 66 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCE-EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 344 566677889999999886655444322110 000111 23677788889999999876 5432 2
Q ss_pred EecCCCc--cceEEec--CCCcEEEEec------CCCEEEEECCCCeEEEEeecCC------------------------
Q 005325 141 LRIPRMG--RDMAYNS--WSCDLLCAAS------SPELYRINLEQGRFLSSLNTQS------------------------ 186 (702)
Q Consensus 141 ~~i~~~~--~~l~~~~--~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~------------------------ 186 (702)
....... ..+...+ ....++++.. ++.|+.||..+|+.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 3322110 0110000 1234566544 3679999999999988775311
Q ss_pred -------CCeEEEEEcCCCCEEEEEEcCCe-------------------EEEEECCCCcceeEEecccCC---CCCCCCe
Q 005325 187 -------PALNVVSRSKLHGLIACGGEDGA-------------------VECFDMRMRSSAARINAVAPA---GDADQEV 237 (702)
Q Consensus 187 -------~~V~~l~~sp~~~llasgs~DG~-------------------V~iWD~~t~~~v~~l~~~~~~---~~~~~~V 237 (702)
.....+++.|...+++.++.++. |..+|+.+++.+..+...... .....++
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 01124678888889999887764 999999999998888764100 0011333
Q ss_pred EEEEEcCCCCC---EEEEEeCCCeEEEEEcCCCeEEEEeecc-----------CCCCe----------------------
Q 005325 238 TALEFDSNGGF---LMGVGSSTGKVLIYDLRSSYPIRVKDHM-----------FDSPI---------------------- 281 (702)
Q Consensus 238 tslafspd~g~---~LasGs~DG~V~lwDlrs~~~l~~~~h~-----------~~~~I---------------------- 281 (702)
....+..+ |. .|++++.+|.|+++|..+++++...... .+.+|
T Consensus 303 ~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 303 TLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred EEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 33333345 65 6889999999999999999987421110 01111
Q ss_pred --EEEEEeeccCCCCCeEE-----------------------------------E-eCCCEEEEEeCCCCceeEEecCCC
Q 005325 282 --VDIKWHQSINTERPKLI-----------------------------------T-TDNHIVRIWDPETGESMTSIEPTA 323 (702)
Q Consensus 282 --~sl~fsp~~~~~~~ll~-----------------------------------s-s~Dg~V~IWd~~tg~~l~~i~~h~ 323 (702)
..++|+| ..+.+++ . ..++.|..||+.+|+.+..+.. .
T Consensus 382 ~w~~~a~dp---~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~ 457 (668)
T 1kv9_A 382 NWHSMSFNP---GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-P 457 (668)
T ss_dssp CSSCCEEET---TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-S
T ss_pred CCCcceECC---CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-C
Confidence 1145555 1122221 1 1248899999999999888765 4
Q ss_pred CceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 324 GKINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 324 ~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
.++....+...++++++++.++.++.|...
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 445544566778899999999999988754
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.47 E-value=5.4e-05 Score=77.12 Aligned_cols=192 Identities=8% Similarity=0.037 Sum_probs=132.2
Q ss_pred cceEEecCCCcEEEEec---CCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE
Q 005325 148 RDMAYNSWSCDLLCAAS---SPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR 223 (702)
Q Consensus 148 ~~l~~~~~s~~llv~s~---d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~ 223 (702)
..+.+.+. ..|++++. ++.|.++|+.+++.+..+..... ....+++.. +.+.++.-.++.|.++|..+.+.+.+
T Consensus 24 ~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 24 QGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred ccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 35666654 46777654 46799999999999988764332 233455552 24445555589999999999999988
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-cCCC---CeEEEEEeeccCCCCCeEEE
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-MFDS---PIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-~~~~---~I~sl~fsp~~~~~~~ll~s 299 (702)
+... . ..-.. ++++ |..|+++..++.|.++|..+.+.+....- ..+. .++.+.|. ++.+.+.
T Consensus 102 i~~g-~-----~~g~g--lt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-----dg~lyvn 167 (266)
T 2iwa_A 102 FTHQ-M-----KDGWG--LATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-----NGEVWAN 167 (266)
T ss_dssp EECC-S-----SSCCE--EEEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----TTEEEEE
T ss_pred EECC-C-----CCeEE--EEEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-----CCEEEEe
Confidence 8653 0 11123 4456 66666666789999999999876652221 1122 35788887 4466666
Q ss_pred e-CCCEEEEEeCCCCceeEEecCC-------------CCceeEEEEEcCCCEEEEEe-CCCcEEEEEcCCC
Q 005325 300 T-DNHIVRIWDPETGESMTSIEPT-------------AGKINDVCVFKDSGLLLLAL-DCSQIPSYFIPDL 355 (702)
Q Consensus 300 s-~Dg~V~IWd~~tg~~l~~i~~h-------------~~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ip~l 355 (702)
. .++.|.+.|+.+++.+..+... ....+.|+|.|++..+++++ ....|....+...
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5 5889999999999999988651 13568999999987666665 6777877766554
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=8.4e-06 Score=82.42 Aligned_cols=178 Identities=15% Similarity=0.163 Sum_probs=121.6
Q ss_pred ceEEecCCCcEEEEecC-C--CEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEECCCCcceeEE
Q 005325 149 DMAYNSWSCDLLCAASS-P--ELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d-~--~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V~iWD~~t~~~v~~l 224 (702)
.+.+. ...|+.++.. + .|.++|+.+++.+..+..... +....+.+.+..|... ..++.+.+||+.+.+.+.++
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 55555 2345555443 3 689999999999988866543 3332223334444444 45899999999999999999
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-cCCCC---eEEEEEeeccCCCCCeEEEe
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-MFDSP---IVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-~~~~~---I~sl~fsp~~~~~~~ll~ss 300 (702)
... ..-..++ ++ +..|+++..++.|.++|..+.+.+....- ..+.+ ++.+.|. ++.+.+..
T Consensus 124 ~~~-------~eG~glt--~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-----~G~lyan~ 188 (262)
T 3nol_A 124 NYD-------GEGWGLT--HN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-----DGEIFANV 188 (262)
T ss_dssp ECS-------SCCCCEE--EC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-----TTEEEEEE
T ss_pred ECC-------CCceEEe--cC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-----CCEEEEEE
Confidence 876 2223444 45 66666666688999999999887662211 11223 4568886 45677666
Q ss_pred -CCCEEEEEeCCCCceeEEecCC------------CCceeEEEEEcCCCEEEEEeCC
Q 005325 301 -DNHIVRIWDPETGESMTSIEPT------------AGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 301 -~Dg~V~IWd~~tg~~l~~i~~h------------~~~I~~v~~~p~~~~l~~a~~d 344 (702)
.++.|.+.|..+|+.+..|... ....|.|||.|++..|++++..
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5889999999999998887652 1356899999988877777653
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.43 E-value=7.3e-05 Score=85.01 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=161.8
Q ss_pred EEEEec-CCcEEEEEc-CCceEEEeeecCCc-----------eEEEEEEcCCCCEEEEEECCCeEEEEecC-CceE-EEe
Q 005325 78 IVSGIY-PPQVKVYEL-RQLSLKFERHLDSE-----------IINFEVLADDYSKLAFLCADRSISLHAKY-GKHY-SLR 142 (702)
Q Consensus 78 latGs~-dg~I~vwdl-~~~~~~~~~h~~~~-----------vv~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~-~~~ 142 (702)
|.+++. ++.|..+|. .+....+....... +.....+ ++..+++++.|+.|..+|.. |... ...
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 142 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEVE 142 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEec
Confidence 344555 789999999 77555444332211 0000112 23677778888988888875 4332 233
Q ss_pred cCCCcc--ceEEec--CCCcEEEEec------CCCEEEEECCCCeEEEEeecCCCC------------------------
Q 005325 143 IPRMGR--DMAYNS--WSCDLLCAAS------SPELYRINLEQGRFLSSLNTQSPA------------------------ 188 (702)
Q Consensus 143 i~~~~~--~l~~~~--~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~~------------------------ 188 (702)
+..... .+...+ ....+++++. ++.|+.+|..+|+.+..+......
T Consensus 143 ~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~ 222 (571)
T 2ad6_A 143 VCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTK 222 (571)
T ss_dssp CCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHH
T ss_pred CCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccc
Confidence 322100 111001 1344666665 678999999999998876543211
Q ss_pred --------------eEEEEEcCCCCEEEEEEcC----------------CeEEEEECCCCcceeEEecccCCC----CCC
Q 005325 189 --------------LNVVSRSKLHGLIACGGED----------------GAVECFDMRMRSSAARINAVAPAG----DAD 234 (702)
Q Consensus 189 --------------V~~l~~sp~~~llasgs~D----------------G~V~iWD~~t~~~v~~l~~~~~~~----~~~ 234 (702)
...+++.+...+++.++.+ +.|..+|+.+++.+..+....... ...
T Consensus 223 ~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~ 302 (571)
T 2ad6_A 223 TWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVN 302 (571)
T ss_dssp TSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCC
T ss_pred cCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCC
Confidence 0135667777777777642 369999999999888877541100 011
Q ss_pred CCeEEEEEcCCCCC---EEEEEeCCCeEEEEEcCCCeEEEEeeccC------------CCCe------------------
Q 005325 235 QEVTALEFDSNGGF---LMGVGSSTGKVLIYDLRSSYPIRVKDHMF------------DSPI------------------ 281 (702)
Q Consensus 235 ~~Vtslafspd~g~---~LasGs~DG~V~lwDlrs~~~l~~~~h~~------------~~~I------------------ 281 (702)
.++. +...++ |. .+++++.+|.|.++|..+++++....... +.||
T Consensus 303 ~p~l-~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P 380 (571)
T 2ad6_A 303 QMVL-TDQPVN-GKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICP 380 (571)
T ss_dssp CCEE-EEEEET-TEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESS
T ss_pred CCEE-EecccC-CcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECC
Confidence 2222 233345 63 67788999999999999999877432210 1122
Q ss_pred --------EEEEEeeccCCCCCeEEEe-------------------------------------CCCEEEEEeCCCCcee
Q 005325 282 --------VDIKWHQSINTERPKLITT-------------------------------------DNHIVRIWDPETGESM 316 (702)
Q Consensus 282 --------~sl~fsp~~~~~~~ll~ss-------------------------------------~Dg~V~IWd~~tg~~l 316 (702)
..++|+| ..+.+++.+ .++.|..||+.+|+.+
T Consensus 381 ~~~Gg~~w~~~a~dp---~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 381 SAMGFHNQGVDSYDP---ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp CTTCSSCSCBCEEET---TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred CCccccCCCCceECC---CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 1345555 223333322 3578999999999998
Q ss_pred EEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 317 TSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 317 ~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
..+.. ...+....+...++++++++.++.++.|....
T Consensus 458 W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 458 WTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp EEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred EEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 88765 34444444455677888899999999887643
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=8.6e-05 Score=84.76 Aligned_cols=271 Identities=9% Similarity=0.001 Sum_probs=160.2
Q ss_pred CCEEEEEEec-CCcEEEEEc-CCceEEEeeecCCc-----------eEEEEEEcCCCCE----EEEEECCCeEEEEecC-
Q 005325 74 GEFLIVSGIY-PPQVKVYEL-RQLSLKFERHLDSE-----------IINFEVLADDYSK----LAFLCADRSISLHAKY- 135 (702)
Q Consensus 74 G~~llatGs~-dg~I~vwdl-~~~~~~~~~h~~~~-----------vv~~~~ls~dg~~----Las~s~D~~I~iw~~~- 135 (702)
+.. |.+++. ++.|..+|. .+....+....... +..-..+++.+.. |++++.|+.|..+|..
T Consensus 62 ~g~-vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGK-MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCE-EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 344 444555 889999999 77555444332211 0111223222233 7777788888888865
Q ss_pred CceE-EEecCCC-----cc-ceEEecCCCcEEEEec------CCCEEEEECCCCeEEEEeecCCCC--------------
Q 005325 136 GKHY-SLRIPRM-----GR-DMAYNSWSCDLLCAAS------SPELYRINLEQGRFLSSLNTQSPA-------------- 188 (702)
Q Consensus 136 g~~~-~~~i~~~-----~~-~l~~~~~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~~-------------- 188 (702)
|... ....... .. .... ....+++++. ++.|+.+|..+|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 4332 2333221 01 1111 1234565553 688999999999998776543211
Q ss_pred -----------------------e-EEEEEcCCCCEEEEEEcCC----------------eEEEEECCCCcceeEEeccc
Q 005325 189 -----------------------L-NVVSRSKLHGLIACGGEDG----------------AVECFDMRMRSSAARINAVA 228 (702)
Q Consensus 189 -----------------------V-~~l~~sp~~~llasgs~DG----------------~V~iWD~~t~~~v~~l~~~~ 228 (702)
+ ..+++.+...+++.++.++ .|..+|+.+++.+..+....
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 1345667778888887653 89999999999988877652
Q ss_pred CCC----CCCCCeEEEEEc-CCCC---CEEEEEeCCCeEEEEEcCCCeEEEEeecc------------CCCCe-------
Q 005325 229 PAG----DADQEVTALEFD-SNGG---FLMGVGSSTGKVLIYDLRSSYPIRVKDHM------------FDSPI------- 281 (702)
Q Consensus 229 ~~~----~~~~~Vtslafs-pd~g---~~LasGs~DG~V~lwDlrs~~~l~~~~h~------------~~~~I------- 281 (702)
... ....++ -+... .+ | ..++.++.+|.|.++|..+++++...... .+.||
T Consensus 299 ~d~wd~d~~~~p~-l~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 299 HDEWDYAGVNVMM-LSEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp TCSSCCCCCCCCE-EEEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CccccccCCCccE-EEeccccC-CcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 100 001122 23332 45 6 56778899999999999999988733210 01122
Q ss_pred -------------------EEEEEeeccCCCCCeE-E------------------------------E---e------CC
Q 005325 282 -------------------VDIKWHQSINTERPKL-I------------------------------T---T------DN 302 (702)
Q Consensus 282 -------------------~sl~fsp~~~~~~~ll-~------------------------------s---s------~D 302 (702)
..++|+| ...++ + . + ..
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp----~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~ 452 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDP----KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGL 452 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEET----TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCC
T ss_pred CCCCCccEeccCcccccCCCCccCCC----CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCc
Confidence 1234443 11111 1 0 1 34
Q ss_pred CEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 303 HIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 303 g~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+.|..||+.+|+.+..... ..++..-.+...++++++++.++.++.|....
T Consensus 453 G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 7899999999999887753 33333222344678889999999998887654
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=0.00014 Score=72.88 Aligned_cols=185 Identities=15% Similarity=0.148 Sum_probs=125.6
Q ss_pred ceEEecCCCcEEEEecC---CCEEEEECCCCeEEEEeecCCCC-eEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEE
Q 005325 149 DMAYNSWSCDLLCAASS---PELYRINLEQGRFLSSLNTQSPA-LNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARI 224 (702)
Q Consensus 149 ~l~~~~~s~~llv~s~d---~~V~vwdl~~g~~~~~l~~h~~~-V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l 224 (702)
.+.|.. ..|+.++.. +.|.++|+.+|+.+..+...... --.+++.. +.+++....++.+.+||..+.+.+.++
T Consensus 25 GL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 25 GLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 555554 446555544 36999999999999887655432 12344432 345555556899999999999999999
Q ss_pred ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-cCC---CCeEEEEEeeccCCCCCeEEEe
Q 005325 225 NAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-MFD---SPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 225 ~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-~~~---~~I~sl~fsp~~~~~~~ll~ss 300 (702)
... ..-..|+ ++ +..|+++..++.|.++|..+.+.+....- .++ ..++.+.|. ++.+.+..
T Consensus 102 ~~~-------~~Gwglt--~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-----~G~lyanv 166 (243)
T 3mbr_X 102 RYP-------GEGWALT--SD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-----NGELLANV 166 (243)
T ss_dssp ECS-------SCCCEEE--EC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----TTEEEEEE
T ss_pred eCC-------CCceEEe--eC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-----CCEEEEEE
Confidence 876 2224555 45 56666667789999999999887652211 112 245677886 55666666
Q ss_pred -CCCEEEEEeCCCCceeEEecCC-------------CCceeEEEEEcCCCEEEEEeC-CCcEEEEE
Q 005325 301 -DNHIVRIWDPETGESMTSIEPT-------------AGKINDVCVFKDSGLLLLALD-CSQIPSYF 351 (702)
Q Consensus 301 -~Dg~V~IWd~~tg~~l~~i~~h-------------~~~I~~v~~~p~~~~l~~a~~-d~~I~~~~ 351 (702)
.+..|.+.|..+|+.+..+... ....|.||+.|++..|++++. =..|+-..
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 5889999999999998887531 135689999998776666654 44444433
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00025 Score=73.55 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=134.1
Q ss_pred ceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEE
Q 005325 52 RVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISL 131 (702)
Q Consensus 52 rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~i 131 (702)
..+++..|........++|+++|.. +++....+.|..||.......+.. ... ....+.+.++++.+++......
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~l-yv~d~~~~~I~~~d~~g~~~~~~~-~~~-~p~gia~~~dG~l~vad~~~~~--- 94 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGTI-FVTNHEVGEIVSITPDGNQQIHAT-VEG-KVSGLAFTSNGDLVATGWNADS--- 94 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCE-EEEETTTTEEEEECTTCCEEEEEE-CSS-EEEEEEECTTSCEEEEEECTTS---
T ss_pred CceEeEeCCCCCCcceEEECCCCCE-EEEeCCCCeEEEECCCCceEEEEe-CCC-CceeEEEcCCCcEEEEeccCCc---
Confidence 3456777765567789999999985 777767888988887653222111 111 1233344555543332221111
Q ss_pred EecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeE
Q 005325 132 HAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHGLIACGGEDGAV 210 (702)
Q Consensus 132 w~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V 210 (702)
..|+.+|..+++....... .....+.+++.+.+.++++-..++.|
T Consensus 95 ----------------------------------~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 95 ----------------------------------IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI 140 (306)
T ss_dssp ----------------------------------CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred ----------------------------------ceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeE
Confidence 1244455555543222111 12233455555555555555468899
Q ss_pred EEEECCCCc-ceeEEeccc---CCCCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCC-CeE--EEEeeccCCCCeE
Q 005325 211 ECFDMRMRS-SAARINAVA---PAGDADQEVTALEFDSNGGFLM-GVGSSTGKVLIYDLRS-SYP--IRVKDHMFDSPIV 282 (702)
Q Consensus 211 ~iWD~~t~~-~v~~l~~~~---~~~~~~~~Vtslafspd~g~~L-asGs~DG~V~lwDlrs-~~~--l~~~~h~~~~~I~ 282 (702)
.++|..++. .+....... .....-.....| +|+ +..| ++-+..+.|.+||+.. +.. ...... .....
T Consensus 141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~ 215 (306)
T 2p4o_A 141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNID 215 (306)
T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCS
T ss_pred EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCC
Confidence 999987542 121111100 000111234555 777 6555 4555678999999874 321 111111 12346
Q ss_pred EEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeE--EecCCCCceeEEEEE---cCCCEEEEEeCCC
Q 005325 283 DIKWHQSINTERPKLITT-DNHIVRIWDPETGESMT--SIEPTAGKINDVCVF---KDSGLLLLALDCS 345 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~--~i~~h~~~I~~v~~~---p~~~~l~~a~~d~ 345 (702)
.|++.+ ++.++++. ..+.|.+++.. |+... .+.......++++|. |+++.|++++..+
T Consensus 216 gi~vd~----dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 216 DFAFDV----EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp SEEEBT----TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEECC----CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 788886 55565554 57889999975 66533 344323568899998 8888888777653
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.35 E-value=2.4e-05 Score=79.12 Aligned_cols=176 Identities=10% Similarity=0.036 Sum_probs=121.2
Q ss_pred ceEEecCCCcEEEEe-cCCCEEEEECCCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEec
Q 005325 149 DMAYNSWSCDLLCAA-SSPELYRINLEQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINA 226 (702)
Q Consensus 149 ~l~~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~ 226 (702)
.+.+. ...|+.++ .++.|.++|+.+++.+..+ .... .--.+++.. +.++++...++.+.+||..+.+.+.++..
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 44554 23454444 4457899999999988877 4332 122355442 35555555689999999999999999987
Q ss_pred ccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eeccCCC---CeEEEEEeeccCCCCCeEEEe-C
Q 005325 227 VAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDS---PIVDIKWHQSINTERPKLITT-D 301 (702)
Q Consensus 227 ~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~---~I~sl~fsp~~~~~~~ll~ss-~ 301 (702)
. ..-..|+ ++ +..|+++..++.|.++|..+.+.+.. .-...+. .++.+.|. ++.+.+.. .
T Consensus 135 ~-------~eGwGLt--~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-----dG~lyanvw~ 199 (268)
T 3nok_A 135 S-------GEGWGLC--YW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-----NGVIYANIWH 199 (268)
T ss_dssp S-------SCCCCEE--EE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----TTEEEEEETT
T ss_pred C-------CceeEEe--cC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-----CCEEEEEECC
Confidence 6 2224455 45 67777777799999999999887662 2111122 35678887 45677666 5
Q ss_pred CCEEEEEeCCCCceeEEecCC-------------CCceeEEEEEcCCCEEEEEeC
Q 005325 302 NHIVRIWDPETGESMTSIEPT-------------AGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 302 Dg~V~IWd~~tg~~l~~i~~h-------------~~~I~~v~~~p~~~~l~~a~~ 343 (702)
++.|.+.|..+|+.+..|... ....|.|||.|++..|++++.
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 889999999999998887541 136789999997776666554
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.0016 Score=76.69 Aligned_cols=272 Identities=11% Similarity=0.057 Sum_probs=164.7
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEee---------ecCCceEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFER---------HLDSEIINFEVLADDYSKLAFLCADRSISLHA 133 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~---------h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~ 133 (702)
..|.+|...++|.. -.|++++-|..|+.......... ......+..++...++. |..++.++-|..++
T Consensus 313 ~~v~~i~~D~~g~l--Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 313 ASARYIFQDSFNNI--WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SCEEEEEECSSCCE--EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CeEEEEEEeCCCCE--EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 56889999999875 66787888999988763332221 11223455555666654 44566556677777
Q ss_pred cCCceEEE-e----cCCC-ccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee--cCCCCeEEEEEcCCCCEEEEEE
Q 005325 134 KYGKHYSL-R----IPRM-GRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN--TQSPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 134 ~~g~~~~~-~----i~~~-~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~--~h~~~V~~l~~sp~~~llasgs 205 (702)
........ . ++.. ..++.. .....|++++.++.|+++|..++++..... .....|.++...+++.+ ..|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~-d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLK-DSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEE-CTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEE-CCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEE
Confidence 66322211 1 1111 112222 234568888887889999998887644321 23457999988877754 4455
Q ss_pred cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee-c-cCCCCeEE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD-H-MFDSPIVD 283 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~-h-~~~~~I~s 283 (702)
. +-|.+||..+++........ ........|.+|+..++ |. |.+|+..+-|..||..+.+...+.. + .....|.+
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~ 543 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTS-NSQLLENFVRSIAQDSE-GR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQ 543 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTT-TSSCSCSCEEEEEECTT-CC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEE
T ss_pred C-CceEEEeCCCCeEEecccCc-ccccccceeEEEEEcCC-CC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEE
Confidence 5 56899999876543322211 00111367999999988 65 5556664457789988776544321 1 11346888
Q ss_pred EEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC----CCceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 284 IKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT----AGKINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h----~~~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
|...+ .+.+.+++..|.|..||..+++. ..+... ...|.+++..+++. |.+++..+ |..|
T Consensus 544 i~~d~----~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~G-l~~~ 607 (781)
T 3v9f_A 544 IYRSS----KGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN-IWASTNTG-ISCY 607 (781)
T ss_dssp EEECT----TSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC-EEEECSSC-EEEE
T ss_pred EEECC----CCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC-EEEEcCCc-eEEE
Confidence 88864 66777777777658999887653 333221 23677887776665 55555555 4444
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.29 E-value=0.00073 Score=70.34 Aligned_cols=230 Identities=11% Similarity=-0.003 Sum_probs=137.6
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEE-Eeeec-------------------CCceEEEEEEcCCCCEEEEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLK-FERHL-------------------DSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~-~~~h~-------------------~~~vv~~~~ls~dg~~Las~s 124 (702)
..+++++++|.+ +.++..++.|..|+....... +.... ...+ ..+.+.++...|+.+.
T Consensus 21 p~~i~~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p-~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKG-FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRT-YDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCSS-EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCE-EEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCE-EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCC-ceEEEcCCCCcEEEEE
Confidence 456789999986 567888999999988764332 22100 0123 3344665234566665
Q ss_pred CCCeEEEEecCCce-EEEe--cC----CCccceEEecCCCcEEEEecC------------------CCEEEEECCCCeEE
Q 005325 125 ADRSISLHAKYGKH-YSLR--IP----RMGRDMAYNSWSCDLLCAASS------------------PELYRINLEQGRFL 179 (702)
Q Consensus 125 ~D~~I~iw~~~g~~-~~~~--i~----~~~~~l~~~~~s~~llv~s~d------------------~~V~vwdl~~g~~~ 179 (702)
....|..++..+.. ..+. .. ....++++.+....++++... +.|++||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 55667777776422 2221 11 122356666624467776543 56999998877654
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEECCCCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-
Q 005325 180 SSLNTQSPALNVVSRSKLHGLIACG-GEDGAVECFDMRMRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS- 255 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V~iWD~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~- 255 (702)
.... .....+.|+|+|+++.|+++ +..+.|.+|++.... ....+... .. ...|+++++ |.+.++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~------~g-P~gi~~d~~-G~l~va~~~~ 249 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI------PN-PGNIKRNAD-GHFWVSSSEE 249 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC------SS-EEEEEECTT-SCEEEEEEEE
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC------CC-CCCeEECCC-CCEEEEecCc
Confidence 3222 22346789999999855544 567899999987532 11222211 13 788999999 776555444
Q ss_pred ---------CCeEEEEEcCCCeEEEEeeccCC---CCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC
Q 005325 256 ---------TGKVLIYDLRSSYPIRVKDHMFD---SPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE 311 (702)
Q Consensus 256 ---------DG~V~lwDlrs~~~l~~~~h~~~---~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~ 311 (702)
.+.|..+|.. ++.+.......+ ..++++++. ++.|++++ ..+.|.++++.
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-----~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-----DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-----TTEEEEECSSCSEEEEEEC-
T ss_pred ccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-----CCEEEEeecCCCceEEEecc
Confidence 4678888874 555543322111 346677774 55666665 67888888876
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.0017 Score=69.79 Aligned_cols=253 Identities=11% Similarity=-0.006 Sum_probs=149.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEE-EEECCCeEEEEecCCceEEEe
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLA-FLCADRSISLHAKYGKHYSLR 142 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~La-s~s~D~~I~iw~~~g~~~~~~ 142 (702)
..+|.+..+. .+|+++ ....|+.+++..............+..+. +.+....|. +-...+.|..++..+......
T Consensus 78 ~~~C~~~~~~-~~l~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~gl~-~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALD-FHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp SSCEEECSSC-CEEEEE--CBSCEEEECTTSCCCEEEECSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred CCeECCcccc-ceeEee--cCccceeeccCCCcEEEEecCCCccEEEE-EecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 3456666663 343433 33578888887643332222223344444 444334554 444578888888886543332
Q ss_pred cCC---CccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cC-CeEEEEECC
Q 005325 143 IPR---MGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG-ED-GAVECFDMR 216 (702)
Q Consensus 143 i~~---~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~D-G~V~iWD~~ 216 (702)
+.. ....+++.+....|+++... +.|.++++........+.......+.|++.|.+..|+... .. +.|..+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 221 23478887777788777654 5688888865443333333445689999998776555444 34 789888887
Q ss_pred CCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCe
Q 005325 217 MRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPK 296 (702)
Q Consensus 217 t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~l 296 (702)
.......+... -...+.|+|+|+++.++++-+..+.|..+|+.......+.... ......|++. .+.+
T Consensus 234 G~~~~~~~~~~------~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~-----~~~l 301 (386)
T 3v65_B 234 GSGRRIIADTH------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-----EDSL 301 (386)
T ss_dssp SCSCEEEECSS------CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEEE-----TTEE
T ss_pred CCCcEEEEECC------CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEEE-----CCEE
Confidence 54332222222 2457899999873445555566788999998754433332221 2244677774 4455
Q ss_pred EEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEE
Q 005325 297 LITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVF 332 (702)
Q Consensus 297 l~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~ 332 (702)
+.+. ..+.|..++..+|+.+..+........+|++.
T Consensus 302 y~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 5554 58889999987888777765533444455543
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0015 Score=69.22 Aligned_cols=254 Identities=12% Similarity=-0.000 Sum_probs=149.3
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCCceEE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYGKHYS 140 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g~~~~ 140 (702)
+...+|.+..+++ +|+++ ....|+..++..............+..+. +++....|..+ ...+.|..++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~~~~~~~~~~l~-~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALD-FHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEEECSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEEeecCCCceEEEE-EeccccEEEEEeccCCceEEEecCCCCce
Confidence 3455777777744 43443 23458888877644433222222334444 45444555444 45778888888765433
Q ss_pred EecC---CCccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEE-EEEEcC-CeEEEEE
Q 005325 141 LRIP---RMGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLI-ACGGED-GAVECFD 214 (702)
Q Consensus 141 ~~i~---~~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~ll-asgs~D-G~V~iWD 214 (702)
..+. .....+++.+....|+++... +.|.++++........+.......+.|+++|.+..| ++-... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 2222 223477887777788777654 568899987544333333344568999999966544 444444 7899888
Q ss_pred CCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCC
Q 005325 215 MRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 215 ~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~ 294 (702)
+.... ...+... .-...+.|+|+|+++.++++-+..+.|..+|+.......+.... ......|++. .+
T Consensus 189 ~dG~~-~~~~~~~-----~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~-----~~ 256 (349)
T 3v64_C 189 MDGSG-RRIIADT-----HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-----ED 256 (349)
T ss_dssp TTSCS-CEESCCS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEE-----TT
T ss_pred CCCCC-cEEEEEC-----CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEE-----CC
Confidence 87432 2222111 12467899999873445555556788999998754433322211 2244677774 44
Q ss_pred CeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEE
Q 005325 295 PKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 295 ~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
.++.+. ..+.|..++..+|+.+..+........+|++
T Consensus 257 ~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 555554 5788888887778777666543334444544
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.25 E-value=0.00044 Score=78.70 Aligned_cols=268 Identities=10% Similarity=0.037 Sum_probs=155.8
Q ss_pred EEEecCCcEEEEEcCCceEEEeeecCCceE---------EEEEEcCCCCEEEEEECCCeEEEEecC-Cce-EEEecCCC-
Q 005325 79 VSGIYPPQVKVYELRQLSLKFERHLDSEII---------NFEVLADDYSKLAFLCADRSISLHAKY-GKH-YSLRIPRM- 146 (702)
Q Consensus 79 atGs~dg~I~vwdl~~~~~~~~~h~~~~vv---------~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~-~~~~i~~~- 146 (702)
++++..+.|..+|..+....+......... ....+ .+..+++++.|+.|.-+|.. |.. ........
T Consensus 72 yv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~ 149 (582)
T 1flg_A 72 YVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHG 149 (582)
T ss_dssp EEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGG
T ss_pred EEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCC
Confidence 444443449999998855544443322110 00112 23677778888888888875 433 22333221
Q ss_pred ------ccceEEec-CCC--cEEEEec------CCCEEEEECCCCeEEEEeecCCCCe----------------------
Q 005325 147 ------GRDMAYNS-WSC--DLLCAAS------SPELYRINLEQGRFLSSLNTQSPAL---------------------- 189 (702)
Q Consensus 147 ------~~~l~~~~-~s~--~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~~V---------------------- 189 (702)
...+.... ... .+++++. ++.|+.+|..+|+.+.........+
T Consensus 150 ~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~ 229 (582)
T 1flg_A 150 AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDD 229 (582)
T ss_dssp GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBC
T ss_pred cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCc
Confidence 11122211 111 3445443 6789999999999887654321000
Q ss_pred -------------------EEEEEcCCCCEEEEEEc--------------------C----CeEEEEECCCCcceeEEec
Q 005325 190 -------------------NVVSRSKLHGLIACGGE--------------------D----GAVECFDMRMRSSAARINA 226 (702)
Q Consensus 190 -------------------~~l~~sp~~~llasgs~--------------------D----G~V~iWD~~t~~~v~~l~~ 226 (702)
..+++.|...++++++. | +.|..+|+.+++.+..+..
T Consensus 230 ~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~ 309 (582)
T 1flg_A 230 RNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQH 309 (582)
T ss_dssp TTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEES
T ss_pred cccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeC
Confidence 13456677778887773 2 6899999999999888865
Q ss_pred ccCCC----CCCCCeEEEEEc-CCCCC---EEEEEeCCCeEEEEEcCCCeEEEEeeccC------------CCCe-----
Q 005325 227 VAPAG----DADQEVTALEFD-SNGGF---LMGVGSSTGKVLIYDLRSSYPIRVKDHMF------------DSPI----- 281 (702)
Q Consensus 227 ~~~~~----~~~~~Vtslafs-pd~g~---~LasGs~DG~V~lwDlrs~~~l~~~~h~~------------~~~I----- 281 (702)
..... ....++. +... .+ |. .+++++.+|.|+++|..+++++....... +.++
T Consensus 310 ~~~d~wd~~~~~~p~l-~~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 387 (582)
T 1flg_A 310 TPNDAWDFSGNNELVL-FDYKAKD-GKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQ 387 (582)
T ss_dssp STTCCSCCCCCCCCEE-EEEECSS-SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTC
T ss_pred CCCCcccccCCCCcEE-EeeecCC-CCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcccc
Confidence 31100 0012222 2222 45 63 78889999999999999999876322210 0111
Q ss_pred ---------------------------EEEEEeeccCCCCCeEEEe---------------------------------C
Q 005325 282 ---------------------------VDIKWHQSINTERPKLITT---------------------------------D 301 (702)
Q Consensus 282 ---------------------------~sl~fsp~~~~~~~ll~ss---------------------------------~ 301 (702)
..++++| ..+.+++.. .
T Consensus 388 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp---~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 388 RPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQ---DTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp SCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECT---TTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred CCccccccccCCCceEECcCCccccCCCCceECC---CCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 0223343 122333221 2
Q ss_pred CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 302 NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 302 Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++.|..||+.+|+.+..... ..++..-.....++++++++.++.++.|....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 58899999999999887765 33333323344578899999999998887643
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.0015 Score=76.81 Aligned_cols=270 Identities=13% Similarity=0.080 Sum_probs=160.9
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee--------------cCCceEEEEEEcCCCCEEEEEECCCe
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH--------------LDSEIINFEVLADDYSKLAFLCADRS 128 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h--------------~~~~vv~~~~ls~dg~~Las~s~D~~ 128 (702)
..|.+|...++|.+ ..|+..+-|.+|+..+.......+ .....+..++...++. |-.++.++-
T Consensus 258 ~~i~~i~~d~~g~l--Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDNKL--WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTSEE--EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred ceEEEEEECCCCCE--EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 56889999999876 456665678888887633221111 1222355555666654 445665666
Q ss_pred EEEEecCC-ceEEEecC------C--Ccc---ceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe---ecCCCCeEEEE
Q 005325 129 ISLHAKYG-KHYSLRIP------R--MGR---DMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL---NTQSPALNVVS 193 (702)
Q Consensus 129 I~iw~~~g-~~~~~~i~------~--~~~---~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l---~~h~~~V~~l~ 193 (702)
|..++... ....+... . ... ++.. .....|.+++.++.|++||..++.+.... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD-DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE-CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEE-cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 77777653 22222211 0 111 2222 23456899988888999998876543211 12335789998
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 005325 194 RSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 194 ~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~ 273 (702)
..+++.+.+ |+.++-|.+||..+++. ..+... ......|.+|...++ | .|.+|+. +-|.+||..+++...+.
T Consensus 414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~---~~~~~~v~~i~~d~~-g-~lwigt~-~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 414 KDSEGNLWF-GTYLGNISYYNTRLKKF-QIIELE---KNELLDVRVFYEDKN-K-KIWIGTH-AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp ECTTSCEEE-EETTEEEEEECSSSCEE-EECCST---TTCCCCEEEEEECTT-S-EEEEEET-TEEEEEESSSSSCCEEE
T ss_pred ECCCCCEEE-EeccCCEEEEcCCCCcE-EEeccC---CCCCCeEEEEEECCC-C-CEEEEEC-CceEEEeCCCCeEEecc
Confidence 887776555 67767799999887643 222211 012467999999887 5 4666666 56889998876644332
Q ss_pred ecc----CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC----CCCceeEEEEEcCCCEEEEEeCCC
Q 005325 274 DHM----FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP----TAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 274 ~h~----~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~----h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
... ....|.+|...+ .+.+.+++..+-|..||..+++.. .+.. ....|.+++..+++. |.+++..|
T Consensus 486 ~~~~~~~~~~~i~~i~~d~----~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~~G 559 (781)
T 3v9f_A 486 DTSNSQLLENFVRSIAQDS----EGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQ-MWLATGEG 559 (781)
T ss_dssp CTTTSSCSCSCEEEEEECT----TCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSC-EEEEETTE
T ss_pred cCcccccccceeEEEEEcC----CCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCC-EEEEECCC
Confidence 111 135788988875 667777776444778998766543 3321 134678887767665 55555554
Q ss_pred cEEEE
Q 005325 346 QIPSY 350 (702)
Q Consensus 346 ~I~~~ 350 (702)
-+..|
T Consensus 560 lv~~~ 564 (781)
T 3v9f_A 560 LVCFP 564 (781)
T ss_dssp EEEES
T ss_pred ceEEE
Confidence 32433
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=6.8e-05 Score=86.76 Aligned_cols=275 Identities=9% Similarity=-0.013 Sum_probs=143.7
Q ss_pred CCCceeEEEECC-CCCEEEEEEecCC-----------cEEEEEcCCceE----EEeeecCCceEEEEEEcCCCCEEEEEE
Q 005325 61 FETATTKIRETP-DGEFLIVSGIYPP-----------QVKVYELRQLSL----KFERHLDSEIINFEVLADDYSKLAFLC 124 (702)
Q Consensus 61 ~~~~v~~i~~Sp-DG~~llatGs~dg-----------~I~vwdl~~~~~----~~~~h~~~~vv~~~~ls~dg~~Las~s 124 (702)
+|.....+++.| +|+. ++.|+.+. .+.+||+.+... .+...... ......+..++..+++++
T Consensus 184 ~P~~~~~~av~~~~g~l-~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 184 LPIVPAAAAIEPTSGRV-LMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp CSSCCSEEEEETTTTEE-EEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-SSCEEEECTTSCEEEECS
T ss_pred CCCCceeEEEEecCCEE-EEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC-ccccccCCCCCCEEEeCC
Confidence 344455777888 6766 67776543 588999877321 11111111 122334556788888888
Q ss_pred C-CCeEEEEecCCc-eEEEecCCCcc---ceEEecCCCcEEEEe-cC-----CCEEEEECCCCeEEEEe-----ecCCCC
Q 005325 125 A-DRSISLHAKYGK-HYSLRIPRMGR---DMAYNSWSCDLLCAA-SS-----PELYRINLEQGRFLSSL-----NTQSPA 188 (702)
Q Consensus 125 ~-D~~I~iw~~~g~-~~~~~i~~~~~---~l~~~~~s~~llv~s-~d-----~~V~vwdl~~g~~~~~l-----~~h~~~ 188 (702)
. +..+.+||.... ...+.-....+ .++..+.+.-+++++ .+ ..+.+||+.+.+....- ......
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 4 568999988733 22221111222 334443443344555 23 46999999988754320 000000
Q ss_pred eEEEEEcCCCCEEEEEEcCC---------eEEEEECCCCcceeEEecccCC---CCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 189 LNVVSRSKLHGLIACGGEDG---------AVECFDMRMRSSAARINAVAPA---GDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 189 V~~l~~sp~~~llasgs~DG---------~V~iWD~~t~~~v~~l~~~~~~---~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
....+..++.+++.|+.+| .|.+||+.+............. ......-.++.|...++.++++|+.+
T Consensus 342 -~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 342 -KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp -TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred -ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 0011224455666665544 5688998876644333222000 00012335566654337888888754
Q ss_pred C-----------eEEEEEcCCCeEEEEe-eccCCCC-eEEEEEeeccCCCCCeEE-EeCC-----------CEEEEEeCC
Q 005325 257 G-----------KVLIYDLRSSYPIRVK-DHMFDSP-IVDIKWHQSINTERPKLI-TTDN-----------HIVRIWDPE 311 (702)
Q Consensus 257 G-----------~V~lwDlrs~~~l~~~-~h~~~~~-I~sl~fsp~~~~~~~ll~-ss~D-----------g~V~IWd~~ 311 (702)
+ .|.+||..+.....+. ....... -.+++..| ++.+++ ++.+ ..+.+||..
T Consensus 421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~----~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP----DGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT----TSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC----CCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 3 6888998887655443 1111111 23444554 445554 4432 568999997
Q ss_pred CCceeEEecCC--C-CceeEEEEEcCCCEEEEEeC
Q 005325 312 TGESMTSIEPT--A-GKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 312 tg~~l~~i~~h--~-~~I~~v~~~p~~~~l~~a~~ 343 (702)
+.+ ...+... . .......+.|++.++++++.
T Consensus 497 t~~-W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 497 QDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCc-eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 654 2233221 1 12223445688988888875
No 265
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.22 E-value=0.0025 Score=78.09 Aligned_cols=277 Identities=11% Similarity=0.115 Sum_probs=159.1
Q ss_pred CEEEEEEecCCcEEEEEcCC--ceE--EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEecCCCc-c-
Q 005325 75 EFLIVSGIYPPQVKVYELRQ--LSL--KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRIPRMG-R- 148 (702)
Q Consensus 75 ~~llatGs~dg~I~vwdl~~--~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~~-~- 148 (702)
.| |..|..+|.+..+.+.. ..+ .-........+.+..+...+..-+.++.++...++...+...-..+.-.. .
T Consensus 618 ~~-L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~ 696 (1158)
T 3ei3_A 618 HY-LLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNY 696 (1158)
T ss_dssp EE-EEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCE
T ss_pred cE-EEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhce
Confidence 45 78899999987776653 222 11223344556777777666666777777777666655543333332221 1
Q ss_pred ceEEecCC-CcEEEEecCCCEEEEECCCC--eEEEEeecCCCCeEEEEEcCCCCEEEEEEcC------------------
Q 005325 149 DMAYNSWS-CDLLCAASSPELYRINLEQG--RFLSSLNTQSPALNVVSRSKLHGLIACGGED------------------ 207 (702)
Q Consensus 149 ~l~~~~~s-~~llv~s~d~~V~vwdl~~g--~~~~~l~~h~~~V~~l~~sp~~~llasgs~D------------------ 207 (702)
...|+... ++-+++..++.+.+..+..- -.++++... ..+..++++|..+.++.++.+
T Consensus 697 ~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~-~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 775 (1158)
T 3ei3_A 697 MCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLY-ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS 775 (1158)
T ss_dssp EEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECS-SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred EeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCC-CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence 22232222 23455555667777655432 223333333 357788888877665554321
Q ss_pred -------------------------------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEE---EcCCCCCEEEEE
Q 005325 208 -------------------------------GAVECFDMRMRSSAARINAVAPAGDADQEVTALE---FDSNGGFLMGVG 253 (702)
Q Consensus 208 -------------------------------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtsla---fspd~g~~LasG 253 (702)
+.|++.|..+.+.+..+.... ...+.|++ |..+...+|++|
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-----nE~~~sv~~v~~~~~~~~~lvVG 850 (1158)
T 3ei3_A 776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-----NEYALSLVSCKLGKDPNTYFIVG 850 (1158)
T ss_dssp HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-----TEEEEEEEEECCTTCCCCEEEEE
T ss_pred hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-----CcceEEEEEEEEccCCCEEEEEE
Confidence 346778888777776666552 34555555 333324789998
Q ss_pred e----------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeE-EecCC
Q 005325 254 S----------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMT-SIEPT 322 (702)
Q Consensus 254 s----------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~-~i~~h 322 (702)
+ ..|.|++|++...+...+......++|++|+-. +++++++ -.+.|+||++...+.+. ....+
T Consensus 851 Ta~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-----~g~Lla~-ig~~l~vy~l~~~~~L~~~~~~~ 924 (1158)
T 3ei3_A 851 TAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-----NGKLLAS-INSTVRLYEWTTEKELRTECNHY 924 (1158)
T ss_dssp EEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-----TTEEEEE-ETTEEEEEEECTTSCEEEEEEEC
T ss_pred eeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-----CCEEEEE-cCCEEEEEECCCCceEEEEeecc
Confidence 7 458899999986654443222226789999865 4555554 45789999998655443 11111
Q ss_pred CCceeEEEEEcCCCEEEEEeCCCcEEEEE-cCCC--------CCCCCccCcc
Q 005325 323 AGKINDVCVFKDSGLLLLALDCSQIPSYF-IPDL--------GPTPKWCSPI 365 (702)
Q Consensus 323 ~~~I~~v~~~p~~~~l~~a~~d~~I~~~~-ip~l--------g~ap~Wcsfl 365 (702)
..|..+.....++++++|.--..|..+. -+.. ...|+|+...
T Consensus 925 -~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~ 975 (1158)
T 3ei3_A 925 -NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAV 975 (1158)
T ss_dssp -CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEE
T ss_pred -ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEE
Confidence 1233333333467788887766665543 2221 3578895543
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.0062 Score=63.70 Aligned_cols=269 Identities=9% Similarity=0.069 Sum_probs=147.5
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEe-ee--cCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFE-RH--LDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~-~h--~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
...+.+|.|.+++.. +++| ..+.|.. .... ..-... .. .....+..+++.+ ..+..++..+.|..-.-.|.
T Consensus 35 ~~~~~~v~~~~~~~~-~~~G-~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHG-WLVG-VNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLHTTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCE-EEEE-TTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEEESSTTS
T ss_pred CCcEEEEEECCCCcE-EEEc-CCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEEECCCCC
Confidence 456888999877776 5655 4565422 2222 111111 11 0111234444554 34444566666654333343
Q ss_pred eEE-Eec----CCCccceEEecCCCcEEEEecCCCEEEEECCCCe-EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 138 HYS-LRI----PRMGRDMAYNSWSCDLLCAASSPELYRINLEQGR-FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 138 ~~~-~~i----~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
... +.. +.....+.... ...+++++..+.|++- ...|+ .......+...+..+++.|++.+++++...+.++
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG-NGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE-TTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred CceECccccCCCCCeEEEEEEC-CCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 332 221 12222444433 2346666666766553 22232 2222234455789999999888887765544444
Q ss_pred EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec---cCCCCeEEEEEee
Q 005325 212 CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH---MFDSPIVDIKWHQ 288 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h---~~~~~I~sl~fsp 288 (702)
-+|.. +..-..+... ....+..++++++ +..+ +++.+|.|++++...+........ .....+.+|.|.|
T Consensus 188 S~d~g-G~tW~~~~~~-----~~~~~~~~~~~~~-g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 188 TWEPG-QTAWEPHNRT-----TSRRLHNMGFTPD-GRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EECTT-CSSCEEEECC-----SSSCEEEEEECTT-SCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred EeCCC-CCceeECCCC-----CCCccceeEECCC-CCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 44431 2222222221 1367899999998 7655 445678887764332332221111 1124588999986
Q ss_pred ccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC---CCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 289 SINTERPKLITTDNHIVRIWDPETGESMTSIEP---TAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 289 ~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~---h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
.+.+++++.++.| ++..+.|+....+.. +...+++|.|.++ +.+++++.++.|..+.
T Consensus 260 ----~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 ----PNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV 319 (327)
T ss_dssp ----SSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred ----CCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence 5677777777877 566677877776652 2467889988754 4577788888777654
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.19 E-value=0.0061 Score=63.44 Aligned_cols=225 Identities=10% Similarity=0.019 Sum_probs=132.4
Q ss_pred CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCC----ceEEEecC---CCccceEEecCC
Q 005325 85 PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYG----KHYSLRIP---RMGRDMAYNSWS 156 (702)
Q Consensus 85 g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g----~~~~~~i~---~~~~~l~~~~~s 156 (702)
..|+..++..............+..+ .+++....|..+ ...+.|..++..+ ......++ .....+++.+.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~-~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVAL-DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEE-EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEE-EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 56888888774332221112233444 455544555444 4468888888775 22222222 223477777777
Q ss_pred CcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-C-CeEEEEECCCCcceeEEecccCCCCC
Q 005325 157 CDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-D-GAVECFDMRMRSSAARINAVAPAGDA 233 (702)
Q Consensus 157 ~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-D-G~V~iWD~~t~~~v~~l~~~~~~~~~ 233 (702)
..|+++.. .+.|.++++........+.......+.+++.|.+..|+.... . +.|..+++.. .....+... .
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~-----~ 162 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE-----N 162 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS-----S
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEEC-----C
Confidence 77877754 567999998754433333334457889999997655544443 3 7888888863 333333221 0
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee-ccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD-HMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPE 311 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~-h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~ 311 (702)
-.....|+++|+++.++++-+..+.|..+|+.......+.. .........|++. ++.++.+. ..+.|..++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-----~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-----EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-----TTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-----CCEEEEEECCCCeEEEEeCC
Confidence 25678999999834444555567899999997543322221 1112234678875 45555554 57889999988
Q ss_pred CCceeEEecC
Q 005325 312 TGESMTSIEP 321 (702)
Q Consensus 312 tg~~l~~i~~ 321 (702)
+|+.+..+..
T Consensus 238 ~g~~~~~i~~ 247 (316)
T 1ijq_A 238 TGSDVNLLAE 247 (316)
T ss_dssp TCCCCEEEEC
T ss_pred CCcceEEEec
Confidence 8877766654
No 268
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.16 E-value=6.5e-05 Score=84.33 Aligned_cols=183 Identities=12% Similarity=0.018 Sum_probs=131.9
Q ss_pred cEEEEecCC-CEEEEECCCCeEEEEeecC-CCCeEEEEE-c-CCCCEEEEEE------------------cCCeEEEEEC
Q 005325 158 DLLCAASSP-ELYRINLEQGRFLSSLNTQ-SPALNVVSR-S-KLHGLIACGG------------------EDGAVECFDM 215 (702)
Q Consensus 158 ~llv~s~d~-~V~vwdl~~g~~~~~l~~h-~~~V~~l~~-s-p~~~llasgs------------------~DG~V~iWD~ 215 (702)
.++++..++ .|.+.|+.+.++...+... ...+..+++ + |++.++++++ .++.|.++|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 366666554 5999999999988855432 245888887 5 8999888885 2568999999
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC--------------------------------------
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG-------------------------------------- 257 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG-------------------------------------- 257 (702)
.+.+.+.++... .....++++|+ |.++++.+.+.
T Consensus 183 ~t~~v~~qI~Vg-------g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 183 DKWEVAWQVLVS-------GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp TTTEEEEEEEES-------SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred CCCeEEEEEEeC-------CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999999998876 34567889999 88888877543
Q ss_pred eEEEEEcCC--CeE-EEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCc------------eeEEecC
Q 005325 258 KVLIYDLRS--SYP-IRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGE------------SMTSIEP 321 (702)
Q Consensus 258 ~V~lwDlrs--~~~-l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~------------~l~~i~~ 321 (702)
.|.|.|.++ ++. +....- +....++.++| ++.++++++ .+.+|.++|+.+.+ .+..++.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sP---DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAP---DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE--ESSCCCEEECT---TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred cEEEEeCcccCCceeEEEEec--CCCceEEEEcC---CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 377778777 444 332222 23457889998 444555555 58899999999653 4556665
Q ss_pred CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 322 TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 322 h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
......++|+|++...++..-+++|..|.+..
T Consensus 330 -G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 -GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 56778899999994444455688999998653
No 269
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.14 E-value=0.00011 Score=79.91 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=124.5
Q ss_pred EEEEe-cCCCEEEEECCCC----eEEEEee-------cCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEECCCCcc
Q 005325 159 LLCAA-SSPELYRINLEQG----RFLSSLN-------TQSPALNVVSRSKLHGLIACGGED------GAVECFDMRMRSS 220 (702)
Q Consensus 159 llv~s-~d~~V~vwdl~~g----~~~~~l~-------~h~~~V~~l~~sp~~~llasgs~D------G~V~iWD~~t~~~ 220 (702)
|++.+ .++.|+++|+.+. +.+.++. ........+.+.|++ +++++..+ |.|.++|..+.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 44444 4567999998765 6666662 111244567788999 77777666 7899999999999
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-------------------CCCeEEEEEcCCCeEEEEeecc-CCCC
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-------------------STGKVLIYDLRSSYPIRVKDHM-FDSP 280 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-------------------~DG~V~lwDlrs~~~l~~~~h~-~~~~ 280 (702)
+.++..... ...--..+-|+|+ ++.|++.. ...+|.+||+.+++.+...... .+..
T Consensus 177 ~~~~~~~~~---~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 177 LGKWEIDRG---DQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp EEECCSBCT---TCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred EEEEccCCC---CccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 998875410 0122346888999 88888764 3789999999998776644431 1123
Q ss_pred eEEEEE--eeccCCCCCeEEEe------CCCEEEEEeCCCCce--eEE--ecCC----------------CCceeEEEEE
Q 005325 281 IVDIKW--HQSINTERPKLITT------DNHIVRIWDPETGES--MTS--IEPT----------------AGKINDVCVF 332 (702)
Q Consensus 281 I~sl~f--sp~~~~~~~ll~ss------~Dg~V~IWd~~tg~~--l~~--i~~h----------------~~~I~~v~~~ 332 (702)
...|.| +| ++....+++ .+++|.+|....|.. ... +... .....+|.++
T Consensus 253 P~~i~f~~~P---dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 253 ALELRPLHDP---TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEECSST---TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred cceeEeeECC---CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 455656 76 344444444 577888877655431 111 1110 1346789999
Q ss_pred cCCCEEEEEeC-CCcEEEEEcC
Q 005325 333 KDSGLLLLALD-CSQIPSYFIP 353 (702)
Q Consensus 333 p~~~~l~~a~~-d~~I~~~~ip 353 (702)
|++.+|++++. .+.|.+|.|.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEEEeCCCCEEEEEEec
Confidence 99999999886 5678888874
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.001 Score=67.27 Aligned_cols=196 Identities=9% Similarity=0.183 Sum_probs=127.0
Q ss_pred ceEEecCCCcEEE-EecCCCEEEEECCCCeEEEEeecC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc---eeE
Q 005325 149 DMAYNSWSCDLLC-AASSPELYRINLEQGRFLSSLNTQ-SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS---AAR 223 (702)
Q Consensus 149 ~l~~~~~s~~llv-~s~d~~V~vwdl~~g~~~~~l~~h-~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~---v~~ 223 (702)
.+++.+....|++ ...++.|+.+|+. ++.+..+... ....-.|++.+++.++++.-.++.|.++++..... +..
T Consensus 31 Gla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~ 109 (255)
T 3qqz_A 31 SLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKK 109 (255)
T ss_dssp EEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred eeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence 6777777666665 4455679999998 8888877432 24577888888887666655678899998876543 233
Q ss_pred EecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC---CCeEEEEeec------cCCCCeEEEEEeeccCCCC
Q 005325 224 INAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR---SSYPIRVKDH------MFDSPIVDIKWHQSINTER 294 (702)
Q Consensus 224 l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr---s~~~l~~~~h------~~~~~I~sl~fsp~~~~~~ 294 (702)
+.........+.....|+|+|. +..|.++.......||.+. ....+.+..+ ..-..+.+|+|+| .++.
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~-~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp--~tg~ 186 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQ-DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ--QKNT 186 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETT-TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET--TTTE
T ss_pred eccccccccccCCcceEEEeCC-CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC--CCCe
Confidence 3322111233567899999999 7777777666555666554 1112222111 1123568999999 3344
Q ss_pred CeEEEeCCCEEEEEeCCCCceeEEecCCCC---------ceeEEEEEcCCCEEEEEeCCCcEEEE
Q 005325 295 PKLITTDNHIVRIWDPETGESMTSIEPTAG---------KINDVCVFKDSGLLLLALDCSQIPSY 350 (702)
Q Consensus 295 ~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~---------~I~~v~~~p~~~~l~~a~~d~~I~~~ 350 (702)
.++++..++.|.++|.. |+++..+.-..+ .--.|+|.+++. |+++++...++.|
T Consensus 187 lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 187 LLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred EEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 55556678999999976 666665544211 446799999887 6666887766665
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.014 Score=63.01 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=139.1
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCCc----eEEEecC---CCccceEEecC
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYGK----HYSLRIP---RMGRDMAYNSW 155 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g~----~~~~~i~---~~~~~l~~~~~ 155 (702)
...|+..++..............++.+ .+++....|... ...+.|..+++.+. .....+. .....+++...
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l-~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVAL-DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEE-EEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred cceeEEEccCCcceeEeccccCcceEE-eeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 467888888764332222222333444 455444555444 44678888877652 1222222 22336777777
Q ss_pred CCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEECCCCcceeEEecccCCCC
Q 005325 156 SCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE--DGAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 156 s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~--DG~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
...|+++.. .+.|.+.++........+.......+.|++.|.+..|+.... .+.|...++........+...
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~----- 244 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----- 244 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-----
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-----
Confidence 788887765 456888898766544444444456899999997766555442 378999888744332222222
Q ss_pred CCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEe
Q 005325 233 ADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWD 309 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd 309 (702)
-...+.|+++|+ +..|. +-+..+.|..+|+.......+ .....-.....|++. .+.++.+. ..+.|..+|
T Consensus 245 -l~~P~glavd~~-~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-----~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 245 -IQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-----EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp -CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-----TTEEEEEESSSCSEEEEE
T ss_pred -CCceEEEEEEeC-CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-----CCEEEEecCCCCeEEEEE
Confidence 256789999988 55554 445678899999876543332 221111233567764 44555554 577888899
Q ss_pred CCCCceeEEecCCCCceeEEEE
Q 005325 310 PETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 310 ~~tg~~l~~i~~h~~~I~~v~~ 331 (702)
..+|+.+..+........+|.+
T Consensus 318 ~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 318 RLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSSCCCCEEEECSCSCEEEEEE
T ss_pred cCCCCceEEEecCCCCCceEEE
Confidence 8888877777653334455543
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.04 E-value=0.0025 Score=68.48 Aligned_cols=217 Identities=10% Similarity=0.018 Sum_probs=132.4
Q ss_pred CCCeEEEEecCCceEEEecCC--CccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CE
Q 005325 125 ADRSISLHAKYGKHYSLRIPR--MGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GL 200 (702)
Q Consensus 125 ~D~~I~iw~~~g~~~~~~i~~--~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~l 200 (702)
....|...++.+......++. ....+.+.+....|+.+.. .+.|+++++..+.....+.........|++.+.+ .+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 345566667765444433333 3337788877778877764 4569999998765444443333456788898755 55
Q ss_pred EEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEEEcCCCeEEEEeeccCCC
Q 005325 201 IACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-GKVLIYDLRSSYPIRVKDHMFDS 279 (702)
Q Consensus 201 lasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G~V~lwDlrs~~~l~~~~h~~~~ 279 (702)
+++-...+.|.+.++........+... -.....|+++|.++.++++-... +.|..+++.......+.... -.
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~------l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~ 246 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQS------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LF 246 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSS------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CS
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCC------CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CC
Confidence 556556788999988754433333222 25678999999735445554455 78999998764433332221 23
Q ss_pred CeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 280 PIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
....|+|+| .++.|..+- ..+.|..+|+........+.........|++ ..+.++++....+.|..+..
T Consensus 247 ~PnGlavd~---~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 247 WPNGLTIDY---AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp CEEEEEEEG---GGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred CeeeEEEeC---CCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 468999997 344455443 5788999998754433334332445567777 34444555555666666653
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0047 Score=65.38 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=130.4
Q ss_pred CCeEEEEecCCceEEEecCCC--ccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEE
Q 005325 126 DRSISLHAKYGKHYSLRIPRM--GRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLI 201 (702)
Q Consensus 126 D~~I~iw~~~g~~~~~~i~~~--~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~ll 201 (702)
...|...++.+......++.. ...+.+.+....|+.+.. .+.|+++++..+.....+.........+++.+.+ .++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly 131 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 131 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence 344666666655444433333 337788877778877764 4579999988765433333333456789998755 555
Q ss_pred EEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEEEcCCCeEEEEeeccCCCC
Q 005325 202 ACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-GKVLIYDLRSSYPIRVKDHMFDSP 280 (702)
Q Consensus 202 asgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-G~V~lwDlrs~~~l~~~~h~~~~~ 280 (702)
++-...+.|.+.++........+... -.....|+++|.++.++++-... +.|..+++.......+.... -..
T Consensus 132 ~~d~~~~~I~~~~~dG~~~~~l~~~~------l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~ 204 (349)
T 3v64_C 132 WTDSGTSRIEVANLDGAHRKVLLWQS------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFW 204 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECTT------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS-CSC
T ss_pred EEcCCCCeEEEEcCCCCceEEEEeCC------CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCC
Confidence 66566789999998754433333222 25678999999735555555555 88999998764433322221 234
Q ss_pred eEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEE
Q 005325 281 IVDIKWHQSINTERPKLITT-DNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ 351 (702)
...|+|+| .++.+..+- ..+.|..+|+........+.........|++ ..+.++++-...+.|..+.
T Consensus 205 PnGla~d~---~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 205 PNGLTIDY---AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred cceEEEeC---CCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 68999997 345555443 5788999998754333334332345567777 3334444444455565554
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.94 E-value=0.018 Score=59.80 Aligned_cols=227 Identities=10% Similarity=-0.043 Sum_probs=139.0
Q ss_pred EEEEecCCcEEEEcccCCCCCccccchHhhhhhccCcccccceeeeecccCCCceeEEEECCCCCEEEEEEecCCcEEEE
Q 005325 11 MKSTLINGVKMYSLVSQQRSVAAWLTPKKQRALRKNIDYQRRVELIQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVY 90 (702)
Q Consensus 11 l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr~lk~~~~~~~rieliqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vw 90 (702)
|-+++.+.|.+.++.+. .. ..++..+ ..+..++|++++..|+.+-...+.|..+
T Consensus 4 ll~~~~~~I~~i~~~~~-~~----------------------~~~~~~~---~~p~g~~~d~~~~~ly~~D~~~~~I~~~ 57 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRS-EY----------------------TSLIPNL---RNVVALDTEVASNRIYWSDLSQRMICST 57 (316)
T ss_dssp EEEECBSSEEEEETTSC-CC----------------------EEEECSC---SSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEECCCeEEEEECCCc-ce----------------------EehhcCC---CceEEEEEEeCCCEEEEEECCCCcEEEE
Confidence 44566778888888766 21 1223332 3357899999888878888888999999
Q ss_pred EcCC----ce-EEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceEEEecC---CCccceEEecCCCcEEE
Q 005325 91 ELRQ----LS-LKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHYSLRIP---RMGRDMAYNSWSCDLLC 161 (702)
Q Consensus 91 dl~~----~~-~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~~~~i~---~~~~~l~~~~~s~~llv 161 (702)
++.. .. ..+....-..+ ..+++.+.+..| ++-...+.|.+.+..|......+. .....++..+....|++
T Consensus 58 ~~~g~~~~~~~~~~~~~~~~~p-~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 58 QLDRAHGVSSYDTVISRDIQAP-DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp EC--------CEEEECSSCSCC-CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred ECCCCCCCcccEEEEeCCCCCc-CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE
Confidence 9875 11 11111101122 334455444555 444567889999888765443332 23448888888888888
Q ss_pred EecC--CCEEEEECCCCeEEEEe-ecCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEECCCCcceeEEecccCCCCCCCCe
Q 005325 162 AASS--PELYRINLEQGRFLSSL-NTQSPALNVVSRSKLHGLIACG-GEDGAVECFDMRMRSSAARINAVAPAGDADQEV 237 (702)
Q Consensus 162 ~s~d--~~V~vwdl~~g~~~~~l-~~h~~~V~~l~~sp~~~llasg-s~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~V 237 (702)
+... +.|+++++... ....+ ...-...+.|+++|++..|..+ +..+.|..+|+.... ...+.... ......
T Consensus 137 ~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~---~~~~~P 211 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE---KRLAHP 211 (316)
T ss_dssp EECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECT---TTTSSE
T ss_pred EccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecC---CccCCc
Confidence 7764 57999988543 33333 2334568899999877555544 456799999997433 33332110 012345
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 238 TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 238 tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
..|++. . +..+++-...+.|..+|..+++.+.
T Consensus 212 ~giav~-~-~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 212 FSLAVF-E-DKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEEEE-T-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEE-C-CEEEEEECCCCeEEEEeCCCCcceE
Confidence 778885 3 5666666778899999987766443
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.88 E-value=0.00042 Score=81.47 Aligned_cols=200 Identities=10% Similarity=0.097 Sum_probs=109.2
Q ss_pred ceeEEEEC-CCCCEEEEEEecCC----cEEEEEcCCc-eEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 64 ATTKIRET-PDGEFLIVSGIYPP----QVKVYELRQL-SLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 64 ~v~~i~~S-pDG~~llatGs~dg----~I~vwdl~~~-~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
.+...+|| |||++|+.+-...| +|+++|+.+. ... ...... +.....+++|++.|+....|.. +.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~-~~~~~~WspDg~~l~y~~~d~~-------~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSG-TNGEIVWGPDHTSLFYVTKDET-------LR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEE-ECSCCEECSSTTEEEEEEECTT-------CC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccC-ceeeEEEecCCCEEEEEEECCC-------CC
Confidence 56788999 99999655555444 4999999875 421 111000 1123457788888877655421 00
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeE--EEEee-cCCCCeEEEEEcCCCCEEEEEEc---CCeEE
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRF--LSSLN-TQSPALNVVSRSKLHGLIACGGE---DGAVE 211 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~--~~~l~-~h~~~V~~l~~sp~~~llasgs~---DG~V~ 211 (702)
...|+++++.++.. ...+. .+......+.|+|++.+|+..+. ...|.
T Consensus 246 ---------------------------~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~ 298 (751)
T 2xe4_A 246 ---------------------------ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVH 298 (751)
T ss_dssp ---------------------------EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred ---------------------------CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEE
Confidence 01355566655431 11222 22234567899999988776663 34688
Q ss_pred EEECCCCc-ce--eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCC-CeEEE-EeeccCCCCeE
Q 005325 212 CFDMRMRS-SA--ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST----GKVLIYDLRS-SYPIR-VKDHMFDSPIV 282 (702)
Q Consensus 212 iWD~~t~~-~v--~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D----G~V~lwDlrs-~~~l~-~~~h~~~~~I~ 282 (702)
++|+.++. .. ..+... ......++.|+.. +.++++...+ ..|.++|+.+ +.... +..+.....+.
T Consensus 299 ~~d~~~~~~~~~~~~l~~~-----~~~~~~s~~~~~g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~ 372 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEIVRPR-----EKGVRYDVQMHGT-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME 372 (751)
T ss_dssp EEESSSCTTCCCEEESSCC-----CTTCCEEEEEETT-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE
T ss_pred EEECCCCCCCceeEEeecC-----CCCceEEEeeeeC-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE
Confidence 88988753 22 223221 1355677776644 4444444433 3677778765 23222 33442222455
Q ss_pred EEEEeeccCCCCCeEEEe-CCCE--EEEEeC
Q 005325 283 DIKWHQSINTERPKLITT-DNHI--VRIWDP 310 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~--V~IWd~ 310 (702)
.+.+. ++.++++. .++. |.++++
T Consensus 373 ~~~~~-----~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 373 SIAVR-----SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEC-----SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEE-----CCEEEEEEEeCCEEEEEEEec
Confidence 55554 45566555 4664 556665
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.81 E-value=0.0053 Score=63.30 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=104.8
Q ss_pred cCCCceeEEEECCCCCEEEEEEec-CC-cEEEEEcCCceEEE-eeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005325 60 WFETATTKIRETPDGEFLIVSGIY-PP-QVKVYELRQLSLKF-ERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG 136 (702)
Q Consensus 60 ~~~~~v~~i~~SpDG~~llatGs~-dg-~I~vwdl~~~~~~~-~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g 136 (702)
..+..+..|+++++|++ +++... ++ .|..++..+..+.. ..........-....+++..+++-..++.|.+++..+
T Consensus 69 ~~~~~p~gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 69 TVEGKVSGLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ECSSEEEEEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred eCCCCceeEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 34567889999999996 444433 32 46667766533322 1111111122223334433334433578888888764
Q ss_pred ceEEEe---------cC--C--CccceEEecCCCcEEEEec-CCCEEEEECCC-CeE--EEEeecCCCCeEEEEEcCCCC
Q 005325 137 KHYSLR---------IP--R--MGRDMAYNSWSCDLLCAAS-SPELYRINLEQ-GRF--LSSLNTQSPALNVVSRSKLHG 199 (702)
Q Consensus 137 ~~~~~~---------i~--~--~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~-g~~--~~~l~~h~~~V~~l~~sp~~~ 199 (702)
....+. .+ . ....+ .+....|+++.. .+.|++|++.. +.. ...+.. ......+++.++++
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN 224 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC
Confidence 211110 11 1 11133 444455777665 45799999864 331 111111 12456788999999
Q ss_pred EEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEc---CCCCCEEEEEeCCC
Q 005325 200 LIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFD---SNGGFLMGVGSSTG 257 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafs---pd~g~~LasGs~DG 257 (702)
++++....+.|.++|.. ++......... .....++++|. |+ +..|++.+..+
T Consensus 225 l~va~~~~~~V~~~~~~-G~~~~~~~~~~----~~~~p~~~a~~g~~~d-~~~LyVt~~~~ 279 (306)
T 2p4o_A 225 LYGATHIYNSVVRIAPD-RSTTIIAQAEQ----GVIGSTAVAFGQTEGD-CTAIYVVTNGG 279 (306)
T ss_dssp EEEECBTTCCEEEECTT-CCEEEEECGGG----TCTTEEEEEECCSTTT-TTEEEEEECTT
T ss_pred EEEEeCCCCeEEEECCC-CCEEEEeeccc----ccCCceEEEEecccCC-CCEEEEECCCC
Confidence 88887778999999986 54322211220 02568999998 78 77777766544
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.79 E-value=0.039 Score=64.83 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=131.6
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCc----eEEEecC---CCccceEEecC
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGK----HYSLRIP---RMGRDMAYNSW 155 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~----~~~~~i~---~~~~~l~~~~~ 155 (702)
...|+..++....+.........++.+ .+......| ++-...+.|..+++.+. .....+. .....|++...
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl-~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVAL-DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEE-EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeeecCCCceEEE-eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 356777777653222111112223333 444433444 44445677888877652 1122222 23347888877
Q ss_pred CCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-C-CeEEEEECCCCcceeEEecccCCCC
Q 005325 156 SCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-D-GAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 156 s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-D-G~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
...||++... +.|.+.++........+.........|++.|.+..|+.... . +.|...++........+...
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~----- 556 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----- 556 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-----
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-----
Confidence 8788887654 56889998755443334444456899999998665555443 3 68999988744333333322
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV-KDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
-...+.|++++..+.++++-...+.|..+|+.......+ .....-.....|++. .++|+.+- ..+.|...|.
T Consensus 557 -l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-----~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 557 -IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-----EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-----TTEEEEEETTTTEEEEEET
T ss_pred -CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-----CCEEEEEECCCCEEEEEeC
Confidence 257899999987344444545567899999876544333 221111223566665 34555554 5788888888
Q ss_pred CCCceeEEecC
Q 005325 311 ETGESMTSIEP 321 (702)
Q Consensus 311 ~tg~~l~~i~~ 321 (702)
.+|+.+..+..
T Consensus 631 ~tG~~~~~l~~ 641 (791)
T 3m0c_C 631 LTGSDVNLLAE 641 (791)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCcceEEeec
Confidence 88877666644
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.79 E-value=0.034 Score=57.95 Aligned_cols=235 Identities=10% Similarity=-0.048 Sum_probs=135.3
Q ss_pred CCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE--E-Eec-CCCccceEEecCCC
Q 005325 84 PPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY--S-LRI-PRMGRDMAYNSWSC 157 (702)
Q Consensus 84 dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~--~-~~i-~~~~~~l~~~~~s~ 157 (702)
...|+.+++.... .......-..++.+.+-..++..+.+-...+.|..++..+... . +.. ......+++.+...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 3568888887631 1111110112233443333333334444567888888775421 1 111 12334677777777
Q ss_pred cEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEECCCCcceeEEe-cccCCCCC
Q 005325 158 DLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE--DGAVECFDMRMRSSAARIN-AVAPAGDA 233 (702)
Q Consensus 158 ~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~--DG~V~iWD~~t~~~v~~l~-~~~~~~~~ 233 (702)
.|+.+.. .+.|.++++........+.......+.|++.|.+..|+.... .+.|...++.... ...+. ..
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~------ 164 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSE------ 164 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSS------
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECC------
Confidence 7877764 456889998654332223344456889999997666555542 5788888886432 33332 22
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPET 312 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~t 312 (702)
-...+.|+|+|+++.++++-+..+.|..+|+.......+.... ......|++. .+.++.+- ..+.|..++..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~-----~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLF-----EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEE-----TTEEEEEETTTTEEEEEETTT
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEe-----CCEEEEEecCCCeEEEEECCC
Confidence 2457899999973444555566789999998754333222211 2344677775 34455544 578999999988
Q ss_pred CceeEEecCCCCceeEEEE
Q 005325 313 GESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 313 g~~l~~i~~h~~~I~~v~~ 331 (702)
|+....+........+|++
T Consensus 239 G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 239 GEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp CCSCEEEECCCSSCCCEEE
T ss_pred CCceEEEeCCCCCCcEEEE
Confidence 8877666542333344443
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.78 E-value=0.038 Score=59.50 Aligned_cols=202 Identities=7% Similarity=-0.051 Sum_probs=127.5
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc-----eEEEeeecCCceEEEEEEcCCCCEEE-EEECCCeEEEEecCC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL-----SLKFERHLDSEIINFEVLADDYSKLA-FLCADRSISLHAKYG 136 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~-----~~~~~~h~~~~vv~~~~ls~dg~~La-s~s~D~~I~iw~~~g 136 (702)
..+..|+|++.+..|+.+-...+.|..+++... ...+... .......+++...+..|. +-...+.|.+.+..|
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 456789999988887788777889999988751 1122221 111133444555345554 444577898888887
Q ss_pred ceEEEecCC---CccceEEecCCCcEEEEecC--CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcCCeE
Q 005325 137 KHYSLRIPR---MGRDMAYNSWSCDLLCAASS--PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GEDGAV 210 (702)
Q Consensus 137 ~~~~~~i~~---~~~~l~~~~~s~~llv~s~d--~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V 210 (702)
......+.. ..+.++..+....|+.+... +.|++.++........+...-...+.|+++|.+..|..+ +..+.|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 665544432 34488888888888887643 679999987543333333344578999999877665555 446889
Q ss_pred EEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 211 ECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 211 ~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
..+|+........+... ..-.....|++. . +.++++-...+.|..+|..+++.+.
T Consensus 271 ~~~d~dG~~~~~~~~~~----~~l~~P~gl~v~-~-~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 271 SSIDVNGGNRKTILEDE----KRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEETTSCCCEEEEECS----STTSSEEEEEEE-T-TEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEeCCCCccEEEEeCC----CCCCCCEEEEEe-C-CEEEEecCCCCeEEEEEcCCCCceE
Confidence 99998754433333321 012345677774 2 4566676778889999977776544
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.78 E-value=0.0006 Score=80.09 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=101.2
Q ss_pred EEEEECCCC-eEEEE-eecCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCcce--eEEecccCCCCCCCCeE
Q 005325 168 LYRINLEQG-RFLSS-LNTQSPALNVVSRSKLHGLIACGGED-----GAVECFDMRMRSSA--ARINAVAPAGDADQEVT 238 (702)
Q Consensus 168 V~vwdl~~g-~~~~~-l~~h~~~V~~l~~sp~~~llasgs~D-----G~V~iWD~~t~~~v--~~l~~~~~~~~~~~~Vt 238 (702)
|+++|+.++ ..+.. +.. ....++|+|+++.|+....+ ..|.+|++.++... ..+... ......
T Consensus 203 l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~-----~~~~~~ 274 (751)
T 2xe4_A 203 IEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH-----NPLFSA 274 (751)
T ss_dssp EEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC-----CTTCEE
T ss_pred EEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC-----CCceEE
Confidence 677788777 53211 111 13467899999877777765 36888888876532 222222 123567
Q ss_pred EEEEcCCCCCEEEEEeC---CCeEEEEEcCCC--eE--EEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-C----CEEE
Q 005325 239 ALEFDSNGGFLMGVGSS---TGKVLIYDLRSS--YP--IRVKDHMFDSPIVDIKWHQSINTERPKLITTD-N----HIVR 306 (702)
Q Consensus 239 slafspd~g~~LasGs~---DG~V~lwDlrs~--~~--l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-D----g~V~ 306 (702)
++.|+|| |.+|+..+. ...|.++|+.++ .+ ..+... ...+..++.|+. ++.+++.++ + ..|.
T Consensus 275 ~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~~~~----g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 275 FMYKAAD-TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMHG----TSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp EEEECTT-SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEEEET----TTEEEEEECTTTCTTCEEE
T ss_pred EEEECCC-CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEEEeeee----CCEEEEEeCCCCCCCcEEE
Confidence 8999999 988886653 346888999875 33 333222 245667777663 666666653 2 3677
Q ss_pred EEeCCCCceeEE-ecCCCC--ceeEEEEEcCCCEEEEEeCCCcEEEEEcC
Q 005325 307 IWDPETGESMTS-IEPTAG--KINDVCVFKDSGLLLLALDCSQIPSYFIP 353 (702)
Q Consensus 307 IWd~~tg~~l~~-i~~h~~--~I~~v~~~p~~~~l~~a~~d~~I~~~~ip 353 (702)
++++.++..... +-+|.. .+.++++. .+.++++...++...+|.+.
T Consensus 349 ~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 349 IAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred EEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 778765322222 233333 44555554 34466667777766665543
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.018 Score=62.65 Aligned_cols=240 Identities=6% Similarity=-0.056 Sum_probs=135.8
Q ss_pred ceeEEEECC-CCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC-----CeEEEEecCCc
Q 005325 64 ATTKIRETP-DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD-----RSISLHAKYGK 137 (702)
Q Consensus 64 ~v~~i~~Sp-DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D-----~~I~iw~~~g~ 137 (702)
....|+|+| ++..|+++-.. +.|.++|+....+..... ...-...+.+++++..|+.+... ..+.+.+..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 346789998 46664555444 889999998744432222 22224556678888866666542 13444444443
Q ss_pred eE---EEecCCCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeec-CCCCeEEEEEcCCCC-EEEEEEcCCeEE
Q 005325 138 HY---SLRIPRMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNT-QSPALNVVSRSKLHG-LIACGGEDGAVE 211 (702)
Q Consensus 138 ~~---~~~i~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~-h~~~V~~l~~sp~~~-llasgs~DG~V~ 211 (702)
.. .+........+++.+....|+++.. .+.|+++++..+.....+.. .....+.|+|+|+++ ++++-...+.|.
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 22 2222334457888886777887764 46799999987765332222 223578999999998 555556678999
Q ss_pred EEECCC--Ccc--eeEEecccCC---C------CCCCCeE-EEEEc--------CCCCCEEEEEeCCCeEEEEEcCCCeE
Q 005325 212 CFDMRM--RSS--AARINAVAPA---G------DADQEVT-ALEFD--------SNGGFLMGVGSSTGKVLIYDLRSSYP 269 (702)
Q Consensus 212 iWD~~t--~~~--v~~l~~~~~~---~------~~~~~Vt-slafs--------pd~g~~LasGs~DG~V~lwDlrs~~~ 269 (702)
.++... +.. +..+...... . ..-.... .++.. ++ |.++++-...+.|+.++ ..+..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~-g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDE-YDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCC-EEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCC-CeEEEEECCCcEEEEEC-CCCcE
Confidence 988753 221 2222211000 0 0011223 45553 34 55566656678888888 45554
Q ss_pred EEEeecc--------CC--------CCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 270 IRVKDHM--------FD--------SPIVDIKWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 270 l~~~~h~--------~~--------~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
..+.+.. .+ .....|++.| +++.|+++- ..+.|+.+++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~---~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE---ERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET---TTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC---CCCEEEEEECCCCeEEEEcc
Confidence 4443320 01 1357788875 234455443 4666776654
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.71 E-value=0.012 Score=64.19 Aligned_cols=238 Identities=9% Similarity=-0.011 Sum_probs=134.7
Q ss_pred eeEEEECCC--CCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECC----Ce-EEEEecCCc
Q 005325 65 TTKIRETPD--GEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCAD----RS-ISLHAKYGK 137 (702)
Q Consensus 65 v~~i~~SpD--G~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D----~~-I~iw~~~g~ 137 (702)
...|+|+|+ +..|+++-.. +.|+.+++.+..+..... .......+.+++++. |+.+... .. +...+..+.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 568999995 4443454333 899999996644322222 222245666888888 5444432 22 222232221
Q ss_pred e---EEEecCCCccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEe-ecC-CCCeEEEEEcCCCC-EEEEEEcCCeE
Q 005325 138 H---YSLRIPRMGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSL-NTQ-SPALNVVSRSKLHG-LIACGGEDGAV 210 (702)
Q Consensus 138 ~---~~~~i~~~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l-~~h-~~~V~~l~~sp~~~-llasgs~DG~V 210 (702)
. ..+........+++.+....|+++... +.|+++|..++.....+ ... ......|+|+|+++ ++++-...+.|
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 112222334578888877888887754 56999999888763333 221 22345799999998 55555567899
Q ss_pred EEEECC--CCcc--eeEEecccCC---------CCCCCCeEEEEE---------cCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 211 ECFDMR--MRSS--AARINAVAPA---------GDADQEVTALEF---------DSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 211 ~iWD~~--t~~~--v~~l~~~~~~---------~~~~~~Vtslaf---------spd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
..+++. ++.. ...+...... ...-.....|++ .++ |.++++-...+.|+.++. .+.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECT-TSE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEEEEECC-CCC
Confidence 998865 2321 1222211000 001134677999 666 777777677889999985 555
Q ss_pred EEEEeeccC--------C--------CCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 269 PIRVKDHMF--------D--------SPIVDIKWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 269 ~l~~~~h~~--------~--------~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
...+.+... + .....|++.| .++.++++- ..+.|+.+++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~---~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM---KRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET---TTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC---CCCEEEEEeCCCCEEEEEec
Confidence 444433210 0 1246777774 244444443 4666766654
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.68 E-value=0.11 Score=63.71 Aligned_cols=326 Identities=12% Similarity=0.123 Sum_probs=172.4
Q ss_pred eEEEEecCCcEEEEcccCCCCCccccchHhhh---------hh--ccCc-----ccc-cceeeeecccCCCceeEEEECC
Q 005325 10 AMKSTLINGVKMYSLVSQQRSVAAWLTPKKQR---------AL--RKNI-----DYQ-RRVELIQDLWFETATTKIRETP 72 (702)
Q Consensus 10 ~l~~s~~~~Vkiy~vs~g~~slp~w~~~k~kr---------~l--k~~~-----~~~-~rieliqd~~~~~~v~~i~~Sp 72 (702)
+++|+ .++|++++.... ..+-+|.....+. .+ .... ++. ..+..+...+++..|.|+++.|
T Consensus 486 ivQVt-~~~Irli~~~~~-~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~ 563 (1158)
T 3ei3_A 486 LIQIT-SASVRLVSQEPK-ALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITP 563 (1158)
T ss_dssp EEEEE-SSCEEEEESSSC-CEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCC
T ss_pred EEEEe-cCEEEEEECCCC-eEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeec
Confidence 57777 577888777665 5555664322110 00 0000 000 1234445567888999999986
Q ss_pred CC------CEEEEEEec-CCcEEEEEcCCceEEEeeecC--CceEEEEEEc-CCCCEEEEEECCCeEEEEecC---CceE
Q 005325 73 DG------EFLIVSGIY-PPQVKVYELRQLSLKFERHLD--SEIINFEVLA-DDYSKLAFLCADRSISLHAKY---GKHY 139 (702)
Q Consensus 73 DG------~~llatGs~-dg~I~vwdl~~~~~~~~~h~~--~~vv~~~~ls-~dg~~Las~s~D~~I~iw~~~---g~~~ 139 (702)
.+ .+ +|.|.+ |++|+|+.+..+......... ..+..++... ....+|..+-.||.+.-+... |...
T Consensus 564 ~~~~~~~s~~-~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 564 LGDSNGLSPL-CAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 642 (1158)
T ss_dssp CSSSTTCCSE-EEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred CCCCcccccE-EEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence 43 56 888997 999999999885543333222 2233333222 223467778889987655433 3333
Q ss_pred EEe---cCCCccceEEecCC-Cc-EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEE-EEcCCC--CEEEEEEcCCeEE
Q 005325 140 SLR---IPRMGRDMAYNSWS-CD-LLCAASSPELYRINLEQGRFLSSLNTQSPALNVV-SRSKLH--GLIACGGEDGAVE 211 (702)
Q Consensus 140 ~~~---i~~~~~~l~~~~~s-~~-llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l-~~sp~~--~llasgs~DG~V~ 211 (702)
..+ +......+...+.. .. +++++ +.-..++-- .+++..+ ......+.++ .|+... .-++..+ ++.++
T Consensus 643 d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~-~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~Lr 718 (1158)
T 3ei3_A 643 DRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSS-NHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLT 718 (1158)
T ss_dssp EEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEES-SSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEE
T ss_pred cceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEc-CCceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceE
Confidence 221 11111223322222 22 44444 343333332 3443322 1122234333 365432 3444434 45699
Q ss_pred EEECCCCc--ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC---------------------------------
Q 005325 212 CFDMRMRS--SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST--------------------------------- 256 (702)
Q Consensus 212 iWD~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D--------------------------------- 256 (702)
|.-+..-. .+.++... ..+..|+++|. ...+++++.+
T Consensus 719 I~~i~~~~~~~~~~ipL~-------~Tprri~y~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1158)
T 3ei3_A 719 IGTIDEIQKLHIRTVPLY-------ESPRKICYQEV-SQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS 790 (1158)
T ss_dssp EEEECCSSSEEEEEEECS-------SEEEEEEEEGG-GTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred EEEecccCCeeEEEEeCC-------CCceEEEEcCC-CCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence 88876433 33444444 67889999998 6665554421
Q ss_pred ----------------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccC-CCCCeEEEe----------CCCEEEEEe
Q 005325 257 ----------------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSIN-TERPKLITT----------DNHIVRIWD 309 (702)
Q Consensus 257 ----------------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~-~~~~ll~ss----------~Dg~V~IWd 309 (702)
+.|+++|-.+.+.+....-.....+.+++...-.. ...++++|+ ..|.|.|++
T Consensus 791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~ 870 (1158)
T 3ei3_A 791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQ 870 (1158)
T ss_dssp ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEE
T ss_pred ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEE
Confidence 23666666666655432222234455555432111 134566654 257899999
Q ss_pred CCCCc--eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 310 PETGE--SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 310 ~~tg~--~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
+..++ .+...+. .++|++++-.. +.|++| -+..+.+|.+..
T Consensus 871 v~~~kL~lv~~~~v-~g~v~al~~~~--g~Lla~-ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 871 YSDGKLQTVAEKEV-KGAVYSMVEFN--GKLLAS-INSTVRLYEWTT 913 (1158)
T ss_dssp EETTEEEEEEEEEE-SSCEEEEEEET--TEEEEE-ETTEEEEEEECT
T ss_pred EECCEEEEEEEEEc-CCcCEEEeeeC--CEEEEE-cCCEEEEEECCC
Confidence 87543 3334444 67898887664 344444 457888887653
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.64 E-value=0.038 Score=55.64 Aligned_cols=211 Identities=10% Similarity=0.027 Sum_probs=119.7
Q ss_pred CCCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE---EEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc
Q 005325 61 FETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL---KFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK 137 (702)
Q Consensus 61 ~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~---~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~ 137 (702)
....+..|+++|++..|+++...++.|...|+..... .+.+..+. -.+.+ ..++.++++.-.++.+.++.+..
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~--EGIa~-~~~g~~~vs~E~~~~l~~~~v~~- 100 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDL--ETIEY-IGDNQFVISDERDYAIYVISLTP- 100 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSE--EEEEE-CSTTEEEEEETTTTEEEEEEECT-
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCCh--HHeEE-eCCCEEEEEECCCCcEEEEEcCC-
Confidence 4456899999999888788888889999998874222 11121122 23333 34544444433444554433221
Q ss_pred eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEe--ecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 005325 138 HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSL--NTQSPALNVVSRSKLHGLIACGGEDGAVECFDM 215 (702)
Q Consensus 138 ~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l--~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~ 215 (702)
++.+.+.+... ..+ ..+......|+|+|.++.|+++.......||.+
T Consensus 101 ---------------------------~~~i~~~~~~~----~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 101 ---------------------------NSEVKILKKIK----IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp ---------------------------TCCEEEEEEEE----CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred ---------------------------CCeeeeeeeec----cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 11111000000 001 112345789999999977777776555455544
Q ss_pred C---CCcceeEEeccc-CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccC---C-----CCeEE
Q 005325 216 R---MRSSAARINAVA-PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMF---D-----SPIVD 283 (702)
Q Consensus 216 ~---t~~~v~~l~~~~-~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~---~-----~~I~s 283 (702)
. ....+..+.... ........+.+|+|+|..+.+++....+..|.++|.. ++++....-.. + ..--.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 3 112233332210 0001134679999999867778888888999999966 44554322210 1 14578
Q ss_pred EEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 284 IKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 284 l~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
|+|.| ++.+.+++.-+.+.++...
T Consensus 229 ia~d~----~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 229 VAMDA----SGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEECT----TCCEEEEETTTEEEEEEC-
T ss_pred eEECC----CCCEEEEcCCceEEEEEec
Confidence 99997 6678888988877777654
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.018 Score=60.58 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=125.8
Q ss_pred EEEEcC---CCCEEEEEECCCeEEEEecCCceEEEecCC-Ccc--ceEEec-CC---CcEEEEec----CCCEEEEEC--
Q 005325 110 FEVLAD---DYSKLAFLCADRSISLHAKYGKHYSLRIPR-MGR--DMAYNS-WS---CDLLCAAS----SPELYRINL-- 173 (702)
Q Consensus 110 ~~~ls~---dg~~Las~s~D~~I~iw~~~g~~~~~~i~~-~~~--~l~~~~-~s---~~llv~s~----d~~V~vwdl-- 173 (702)
.+|++| ..+.++.....+-+.++++.|..... ++. ... ++...- .+ .++++++. .+.|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl~G~~l~~-~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSLDGKMLHS-YNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEETTSCEEEE-ECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcCCCcEEEE-ccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 455544 33456666677889999998776654 332 112 333311 11 12444443 356888855
Q ss_pred CCCeEEEEeec-------CCCCeEEEEE--cCCC-C-EEEEEEcCCeEEEEECC-------CCcceeEEecccCCCCCCC
Q 005325 174 EQGRFLSSLNT-------QSPALNVVSR--SKLH-G-LIACGGEDGAVECFDMR-------MRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 174 ~~g~~~~~l~~-------h~~~V~~l~~--sp~~-~-llasgs~DG~V~iWD~~-------t~~~v~~l~~~~~~~~~~~ 235 (702)
.++. +..+.. ....+..+|+ +|.. . ++++...+|.+..|++. +.+.+.+|... .
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------s 180 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------S 180 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------S
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------C
Confidence 5554 444311 1135566776 7754 3 57777788999999983 34567777776 6
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-----CCeEEEEeecc-CCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEE
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLR-----SSYPIRVKDHM-FDSPIVDIKWHQSINTERPKLITT-DNHIVRIW 308 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlr-----s~~~l~~~~h~-~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IW 308 (702)
.+-.|...+. ...|+++-.+.-|..||.. +.+.+...... ....+..|+..+.....+++++++ .++++.||
T Consensus 181 q~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 8899999998 8899999998777777755 23444443221 124688888864211123677777 58899999
Q ss_pred eCC-CCceeEEec
Q 005325 309 DPE-TGESMTSIE 320 (702)
Q Consensus 309 d~~-tg~~l~~i~ 320 (702)
|.. +.+.+..+.
T Consensus 260 dr~~~~~~vg~f~ 272 (355)
T 3amr_A 260 DRQGKNKYVADFR 272 (355)
T ss_dssp ESSTTCCEEEEEE
T ss_pred ECCCCCcEEEEEE
Confidence 997 677777764
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.57 E-value=0.16 Score=58.11 Aligned_cols=230 Identities=10% Similarity=-0.007 Sum_probs=138.8
Q ss_pred EEEEEEecCCcEEEEEcCCceEEEeee-cCCceEEEEEEcCCCCEEE-EEECCCeEEEEecCCceEEEecCC---Cccce
Q 005325 76 FLIVSGIYPPQVKVYELRQLSLKFERH-LDSEIINFEVLADDYSKLA-FLCADRSISLHAKYGKHYSLRIPR---MGRDM 150 (702)
Q Consensus 76 ~llatGs~dg~I~vwdl~~~~~~~~~h-~~~~vv~~~~ls~dg~~La-s~s~D~~I~iw~~~g~~~~~~i~~---~~~~l 150 (702)
+||++ ....|+..++.......... ..-.....+.+++....|. +-..++.|..++..|......+.. ....+
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 54444 45778888887632211111 1111133444555445554 444578888888876433332322 23478
Q ss_pred EEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEECCCCcceeEEecc
Q 005325 151 AYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE--DGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 151 ~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~--DG~V~iWD~~t~~~v~~l~~~ 227 (702)
++...+..|+.+... +.|.+.++........+.......+.|++.|....|..... .+.|...++..... ..+...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECC
Confidence 888778888877654 46888998654322222234456889999997655555542 56888888875443 333222
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEE
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVR 306 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~ 306 (702)
-.....|+++++++.++++-+..+.|..+|+.......+... ......|++. .+.++.+- ..+.|.
T Consensus 165 ------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~--l~~P~glav~-----~~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 165 ------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--LPHPFGLTQY-----QDYIYWTDWSRRSIE 231 (628)
T ss_dssp ------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--CSCEEEEEEE-----TTEEEEEETTTTEEE
T ss_pred ------CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc--CCCceEEEEE-----CCEEEEecCCCCEEE
Confidence 367889999998344444555678999999976443323332 2234678876 34565555 588999
Q ss_pred EEeCCCCceeEEecC
Q 005325 307 IWDPETGESMTSIEP 321 (702)
Q Consensus 307 IWd~~tg~~l~~i~~ 321 (702)
..|..+|+....+..
T Consensus 232 ~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 232 RANKTSGQNRTIIQG 246 (628)
T ss_dssp EEETTTCCSCEEEEC
T ss_pred EEECCCCCceEEEec
Confidence 999888876666544
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.57 E-value=0.034 Score=57.86 Aligned_cols=198 Identities=12% Similarity=-0.020 Sum_probs=124.3
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCce---EEEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCceE
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLS---LKFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~---~~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~~~ 139 (702)
.+..|.|.+.+..|+.+-...+.|..+++.... ..+...... + ..+++.+.+..| ++-...+.|.+.+..|...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~-p-~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS-P-DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC-C-CEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC-c-cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 356788998777778888888899999987632 122221111 2 233445444445 4444577899999887654
Q ss_pred EEecC---CCccceEEecCCCcEEEEec--CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEE-EEEcCCeEEEE
Q 005325 140 SLRIP---RMGRDMAYNSWSCDLLCAAS--SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIA-CGGEDGAVECF 213 (702)
Q Consensus 140 ~~~i~---~~~~~l~~~~~s~~llv~s~--d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~lla-sgs~DG~V~iW 213 (702)
...+. .....++..+....|+.+.. .+.|+++++........+...-...+.|+|+|++..|. +=+..+.|..+
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 44332 23347888888888888774 46799998864322222223334678999999765554 44557889999
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
|+........+... ......|++.. +..+++-...+.|..+|..+++...
T Consensus 194 d~dG~~~~~~~~~~------~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 194 NLDGTNRQAVVKGS------LPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp ETTSCSCEEEECSC------CSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred cCCCCceEEEecCC------CCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCceE
Confidence 98743322222212 24567788763 4566666778899999987776443
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.50 E-value=0.013 Score=61.68 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=114.1
Q ss_pred EEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCC-------EEEE-EEc--CCeEEEEEC--CCCcceeEEec
Q 005325 159 LLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHG-------LIAC-GGE--DGAVECFDM--RMRSSAARINA 226 (702)
Q Consensus 159 llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~-------llas-gs~--DG~V~iWD~--~t~~~v~~l~~ 226 (702)
++.....+.+++||+ +|+.+..+.. +.++.|.+-|.-. ++++ .-. +++|.+|++ .++. +..+..
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 344445567999999 8999888754 5688888776321 2233 333 579999966 3433 444421
Q ss_pred c-cCCCCCCCCeEEEEE--cCCCCC-EEEEEeCCCeEEEEEcC---CC----eEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 227 V-APAGDADQEVTALEF--DSNGGF-LMGVGSSTGKVLIYDLR---SS----YPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 227 ~-~~~~~~~~~Vtslaf--spd~g~-~LasGs~DG~V~lwDlr---s~----~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
. .+.......+..||+ +|..+. ++++...+|.+..|++. .+ +.+..... +..+-.+...+ ..+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd---~~g~ 193 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADD---EYGR 193 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEET---TTTE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcC---CCCe
Confidence 0 000000155667777 775243 68888899999999984 22 33444444 56788888886 4566
Q ss_pred eEEEeCCCEEEEEeCC-----CCceeEEecC-C-CCceeEEEEEcC--C-CEEEEEe-CCCcEEEEEc
Q 005325 296 KLITTDNHIVRIWDPE-----TGESMTSIEP-T-AGKINDVCVFKD--S-GLLLLAL-DCSQIPSYFI 352 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~-----tg~~l~~i~~-h-~~~I~~v~~~p~--~-~~l~~a~-~d~~I~~~~i 352 (702)
++++-.+.-|..++.. +++.+..+.. | ...+..|++.+. + ++|++++ .+..+.+|..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 6677677666666644 3456655532 2 247888888653 3 4666666 4557888866
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.50 E-value=0.1 Score=61.25 Aligned_cols=202 Identities=6% Similarity=-0.060 Sum_probs=126.4
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCc-----eEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCC
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQL-----SLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYG 136 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~-----~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g 136 (702)
..+..|+|.+....|+++-...+.|..+++... ...+....... ...+++...+..|+.+ ...+.|.+.++.|
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~-P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA-PDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC-CCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC-cceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 345688999977777888778888999988752 11121111111 2234455555555444 4578899989887
Q ss_pred ceEEEecC---CCccceEEecCCCcEEEEecC--CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcCCeE
Q 005325 137 KHYSLRIP---RMGRDMAYNSWSCDLLCAASS--PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GEDGAV 210 (702)
Q Consensus 137 ~~~~~~i~---~~~~~l~~~~~s~~llv~s~d--~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V 210 (702)
....+.+. ...+.|++.+....||++... +.|.+.++........+.......+.|++.+....|+.+ ...+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 66554443 234588888888888888754 568889987554433344444578999999877655555 446789
Q ss_pred EEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 005325 211 ECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR 271 (702)
Q Consensus 211 ~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~ 271 (702)
...|+........+.... .-....+|++.. +.++++-...+.|...|..++..+.
T Consensus 583 ~~~d~dG~~~~~v~~~~~----~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEK----RLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp EEEETTSCSCEEEEECTT----TTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEecCCCceEEEecCCC----ccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcceE
Confidence 999987544433333220 013455777752 3555565667888888887776544
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.47 E-value=0.0033 Score=72.56 Aligned_cols=201 Identities=10% Similarity=0.016 Sum_probs=112.5
Q ss_pred ceeEEEECCCCCEEEEEEe-cCCcEEEEEcCCceEEEeeecC-CceEEEEEEcCCCCEEEEEE-CC-----CeEEEEecC
Q 005325 64 ATTKIRETPDGEFLIVSGI-YPPQVKVYELRQLSLKFERHLD-SEIINFEVLADDYSKLAFLC-AD-----RSISLHAKY 135 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs-~dg~I~vwdl~~~~~~~~~h~~-~~vv~~~~ls~dg~~Las~s-~D-----~~I~iw~~~ 135 (702)
.+.++++.++|+. ++.|+ .+..+.+||..+.......... ......+..-+++..+++++ .+ ..+.+|+..
T Consensus 244 ~~~~~~~~~~g~l-yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQI-VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCE-EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCE-EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 3455788899987 66666 4568999998764332211111 11111223335778888888 34 578999987
Q ss_pred CceEEEe-------cCCCccceEEecCCCcEEEEec---------CCCEEEEECCCCeEEEEeecCCC---------CeE
Q 005325 136 GKHYSLR-------IPRMGRDMAYNSWSCDLLCAAS---------SPELYRINLEQGRFLSSLNTQSP---------ALN 190 (702)
Q Consensus 136 g~~~~~~-------i~~~~~~l~~~~~s~~llv~s~---------d~~V~vwdl~~g~~~~~l~~h~~---------~V~ 190 (702)
....... ++.......+...+.-+++++. ...+..||+.+.........+.. .-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 4333221 1111111111111112333433 34577899988765544332211 223
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------eEEEEECCCCcceeEE--ecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC
Q 005325 191 VVSRSK-LHGLIACGGEDG-----------AVECFDMRMRSSAARI--NAVAPAGDADQEVTALEFDSNGGFLMGVGSST 256 (702)
Q Consensus 191 ~l~~sp-~~~llasgs~DG-----------~V~iWD~~t~~~v~~l--~~~~~~~~~~~~Vtslafspd~g~~LasGs~D 256 (702)
++.+.. ++.++++|+.++ .|.+||+.+..-.... ..+ ....-.+++..|+ +.++++|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-----~~R~~~~~~~l~~-g~i~v~GG~~ 476 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-----FARTFHTSVVLPD-GSTFITGGQR 476 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-----SCCBSCEEEECTT-SCEEEECCBS
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-----CCcccCCeEECCC-CCEEEECCcc
Confidence 444443 568888888543 6888998876543322 112 0122245566778 8999998864
Q ss_pred -----------CeEEEEEcCCCeEEE
Q 005325 257 -----------GKVLIYDLRSSYPIR 271 (702)
Q Consensus 257 -----------G~V~lwDlrs~~~l~ 271 (702)
..+.+||..+.+...
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred cCcCcCCCCcccceEEEcCCCCceee
Confidence 568999998877544
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.43 E-value=0.00054 Score=79.75 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCC----ceEEEecCC---CccceEEecC
Q 005325 84 PPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYG----KHYSLRIPR---MGRDMAYNSW 155 (702)
Q Consensus 84 dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g----~~~~~~i~~---~~~~l~~~~~ 155 (702)
...|++.++....+.........++.+. +.+....|+.+ ...+.|..+++.+ ......+.. ....|++...
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla-~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALD-TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCE-EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEc-cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3567777776533322111112223333 44444555444 3456777777765 222222211 2235666666
Q ss_pred CCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEE-cC-CeEEEEECCCCcceeEEecccCCCC
Q 005325 156 SCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGG-ED-GAVECFDMRMRSSAARINAVAPAGD 232 (702)
Q Consensus 156 s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs-~D-G~V~iWD~~t~~~v~~l~~~~~~~~ 232 (702)
...||++.. .+.|.++++........+.......+.|+++|.+..|+... .. +.|..+++.... ...+...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~----- 537 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTE----- 537 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCS-----
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeC-----
Confidence 667777644 56799999876544433333334567889998765444433 22 678888776432 2222111
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-cCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeC
Q 005325 233 ADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-MFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDP 310 (702)
Q Consensus 233 ~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~ 310 (702)
.-...+.|+|+|+++.++++-+..+.|.++|+.......+... ........|++. ...++++. ..+.|..++.
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd-----~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-----EDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE-----TTEEEEECSTTTCEEEEET
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE-----CCEEEEEeCCCCeEEEEEc
Confidence 0245678999998455666666778999999975433333211 101123455665 33455554 5788999999
Q ss_pred CCCceeEEecCCCCceeEEEE
Q 005325 311 ETGESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 311 ~tg~~l~~i~~h~~~I~~v~~ 331 (702)
.+|+.+..|.........|++
T Consensus 613 ~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 613 LTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TTEEEEECCCTTCSSCCCCCB
T ss_pred cCCCceEEeecCCCCCcEEEE
Confidence 888888777553333444443
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.037 Score=60.27 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=129.6
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEecCCceEEEecCCC--ccceEEecCCCcEEEEecCC-----CEEEEECCCCeEE--
Q 005325 110 FEVLAD-DYSKLAFLCADRSISLHAKYGKHYSLRIPRM--GRDMAYNSWSCDLLCAASSP-----ELYRINLEQGRFL-- 179 (702)
Q Consensus 110 ~~~ls~-dg~~Las~s~D~~I~iw~~~g~~~~~~i~~~--~~~l~~~~~s~~llv~s~d~-----~V~vwdl~~g~~~-- 179 (702)
.+.++| +...|.++...+.|..++..+.......+.. ...+++.+....|+++...+ .+++++.. +.+.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~ 219 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVI 219 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeee
Confidence 445665 3455655555577888888765444333332 33677777666688777532 24444433 2221
Q ss_pred EEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEE-EEEeCCC
Q 005325 180 SSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLM-GVGSSTG 257 (702)
Q Consensus 180 ~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~L-asGs~DG 257 (702)
..+.. ......++++| ++.++++-..++.|..||+.++......... .......|+|+|+ |.+| ++-...+
T Consensus 220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-----~~~~P~gia~~pd-G~~lyv~d~~~~ 292 (430)
T 3tc9_A 220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-----DSGWEFHIQFHPS-GNYAYIVVVNQH 292 (430)
T ss_dssp EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-----SSSCCEEEEECTT-SSEEEEEETTTT
T ss_pred eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-----CCCcceeEEEcCC-CCEEEEEECCCC
Confidence 22221 23467888999 6777777767899999999876542222222 0245789999999 8854 4555678
Q ss_pred eEEEEEcCC--Ce---EEEEeec-c-------------CCCCeEEEEEeec----cCCCCCeEEEe-CCCEEEEEeCCCC
Q 005325 258 KVLIYDLRS--SY---PIRVKDH-M-------------FDSPIVDIKWHQS----INTERPKLITT-DNHIVRIWDPETG 313 (702)
Q Consensus 258 ~V~lwDlrs--~~---~l~~~~h-~-------------~~~~I~sl~fsp~----~~~~~~ll~ss-~Dg~V~IWd~~tg 313 (702)
.|..++... +. +..+... . ...|--.++..+. ....+.++++- ..+.|+.++. +|
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G 371 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG 371 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC
Confidence 999988763 22 1112211 0 0112113444310 00123454443 5778888884 46
Q ss_pred ceeEEecC----C-------------CCceeEEEEEcCCCEEEEEe-CCCcEEEEE
Q 005325 314 ESMTSIEP----T-------------AGKINDVCVFKDSGLLLLAL-DCSQIPSYF 351 (702)
Q Consensus 314 ~~l~~i~~----h-------------~~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ 351 (702)
........ . -.....|++.|+++.|+++. ...+|+.+.
T Consensus 372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 54333211 0 01467899999655566654 455666654
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.33 E-value=0.061 Score=58.58 Aligned_cols=233 Identities=9% Similarity=0.057 Sum_probs=127.1
Q ss_pred EEEcCC--CCEEEEEECCCeEEEEecCCceEEEecCCC--ccceEEecCCCcEEEEecCC-----CEEEEECCCCeE-EE
Q 005325 111 EVLADD--YSKLAFLCADRSISLHAKYGKHYSLRIPRM--GRDMAYNSWSCDLLCAASSP-----ELYRINLEQGRF-LS 180 (702)
Q Consensus 111 ~~ls~d--g~~Las~s~D~~I~iw~~~g~~~~~~i~~~--~~~l~~~~~s~~llv~s~d~-----~V~vwdl~~g~~-~~ 180 (702)
+.++++ ...|..+...+.|..++..+.......... ...+++.+... |+++...+ .++.++...+.. ..
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~ 222 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERL 222 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccc
Confidence 345552 345555544478888888533333323322 33777777666 77776533 244444332211 01
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEE-EEeCCCe
Q 005325 181 SLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMG-VGSSTGK 258 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~La-sGs~DG~ 258 (702)
.+. .....+.++++| ++.++++-..++.|..+|+.++.....+.... ....-..|+|+|+ +..|. +-...+.
T Consensus 223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----~~~~~~~ia~dpd-G~~LYvad~~~~~ 296 (433)
T 4hw6_A 223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----TKGSNFHIVWHPT-GDWAYIIYNGKHC 296 (433)
T ss_dssp EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS----CCSSCEEEEECTT-SSEEEEEETTTTE
T ss_pred ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC----CCCCcccEEEeCC-CCEEEEEeCCCCE
Confidence 111 223456788999 67777776678899999998776533332220 0123357999999 87554 4456788
Q ss_pred EEEEEcCC--Ce---EEEEeec-c---C---------CCCeEEEEEeecc-----CCCCCeEEEe-CCCEEEEEeCCCCc
Q 005325 259 VLIYDLRS--SY---PIRVKDH-M---F---------DSPIVDIKWHQSI-----NTERPKLITT-DNHIVRIWDPETGE 314 (702)
Q Consensus 259 V~lwDlrs--~~---~l~~~~h-~---~---------~~~I~sl~fsp~~-----~~~~~ll~ss-~Dg~V~IWd~~tg~ 314 (702)
|..+|+.. +. +..+.+. . + -.....|++.+.. ...+.++++- ..+.|++++. +|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 99988652 22 2222221 0 0 0124678882100 0244555544 5788999985 564
Q ss_pred eeEEecCC-----------------CCceeEEEEEcCCCEEEEEe-CCCcEEEEE
Q 005325 315 SMTSIEPT-----------------AGKINDVCVFKDSGLLLLAL-DCSQIPSYF 351 (702)
Q Consensus 315 ~l~~i~~h-----------------~~~I~~v~~~p~~~~l~~a~-~d~~I~~~~ 351 (702)
.....-.. -.....|++.|..+.|+++. ...+|+.+.
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 43332110 11356799996555566554 455666654
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.30 E-value=0.22 Score=51.64 Aligned_cols=250 Identities=14% Similarity=0.202 Sum_probs=153.0
Q ss_pred CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCce--EEEecCCCccceEEecCCCc-EEE
Q 005325 85 PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKH--YSLRIPRMGRDMAYNSWSCD-LLC 161 (702)
Q Consensus 85 g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~--~~~~i~~~~~~l~~~~~s~~-llv 161 (702)
.+|.|.|+.+......+...+ ..+..+|....||.- ..+++.++|+..+. ....++ .++.|..|-.. .+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~~ViALr-ag~~LQiFnletK~klks~~~~---e~VvfWkWis~~~L~ 121 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVA 121 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEEECS---SCEEEEEECSSSEEE
T ss_pred CEEEEEECCCCCCcccccccc---ceeeeCCCccEEEEe-cCCeEEEechHHhhhhcceecC---CccEEEEecCCCeEE
Confidence 378889998843333333333 345567775555444 48899999998432 223332 46777776554 444
Q ss_pred EecCCCEEEEECCC-CeEEEEeecCC----CCeEEEEEcCCCCEEEEEEc-------CCeEEEEECCCCcceeEEecccC
Q 005325 162 AASSPELYRINLEQ-GRFLSSLNTQS----PALNVVSRSKLHGLIACGGE-------DGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 162 ~s~d~~V~vwdl~~-g~~~~~l~~h~----~~V~~l~~sp~~~llasgs~-------DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
--.+..||.|+++. ..+++.|.-|. ..|.....+++.++++..+- .|.+.+|.... +.-+.+.+|.
T Consensus 122 lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha- 199 (365)
T 2xzh_A 122 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA- 199 (365)
T ss_dssp EEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE-
T ss_pred EEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee-
Confidence 45567899999974 35555665553 35667777888877665543 37788998874 3345555551
Q ss_pred CCCCCCCeEEEEEcCCC---C-CEEEEEeC---CCeEEEEEcCCC---e------EEEE-e--eccCCCCeEEEEEeecc
Q 005325 230 AGDADQEVTALEFDSNG---G-FLMGVGSS---TGKVLIYDLRSS---Y------PIRV-K--DHMFDSPIVDIKWHQSI 290 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~---g-~~LasGs~---DG~V~lwDlrs~---~------~l~~-~--~h~~~~~I~sl~fsp~~ 290 (702)
... ..+-.++ . ..|+.+.. .+.++|.++... . .+.+ . +.....| .++..++
T Consensus 200 -----a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP-Vamqvs~-- 269 (365)
T 2xzh_A 200 -----ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISE-- 269 (365)
T ss_dssp -----EEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE-EEEEEET--
T ss_pred -----eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce-EEEEecc--
Confidence 111 1121110 1 12222222 258899998542 1 1111 1 1123344 4677775
Q ss_pred CCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 291 NTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 291 ~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
..+-+.+-+.-|.|++||+.||.++..-.-...+|-..|.+..++=++..+..|++....+..
T Consensus 270 -kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 270 -KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp -TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred -cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 345566677889999999999999988777667777666666655577778999988877654
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.17 Score=55.73 Aligned_cols=208 Identities=7% Similarity=-0.027 Sum_probs=119.5
Q ss_pred eeEEEECC-CCCEEEEEEecCCcEEEEEcCCceEEEeeecCC---ceEEEEEE-------cCCCCEEEEEECCC------
Q 005325 65 TTKIRETP-DGEFLIVSGIYPPQVKVYELRQLSLKFERHLDS---EIINFEVL-------ADDYSKLAFLCADR------ 127 (702)
Q Consensus 65 v~~i~~Sp-DG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~---~vv~~~~l-------s~dg~~Las~s~D~------ 127 (702)
...|+|+| ++..|+++-.....|++.|+.+..+........ .-...+++ ++++..|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899999 466656766666789999988844433222111 11455567 88888776666543
Q ss_pred -eEEEEecCC--ce------EEEecCCCccceEEecCCCcEEEEecC-CCEEEEECC-------CCeE-----------E
Q 005325 128 -SISLHAKYG--KH------YSLRIPRMGRDMAYNSWSCDLLCAASS-PELYRINLE-------QGRF-----------L 179 (702)
Q Consensus 128 -~I~iw~~~g--~~------~~~~i~~~~~~l~~~~~s~~llv~s~d-~~V~vwdl~-------~g~~-----------~ 179 (702)
.|.+.+... .. ..+........++.++....|+++... +.|+++|+. ++.. .
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 255554332 22 122122344477888877888877754 459999987 5543 1
Q ss_pred EE-eec-CCCCeEEEEEcCCCCE-EEEEEcCCeEEEEECC--CCcc--eeEEecccCCC---------CCCCCeE-EEEE
Q 005325 180 SS-LNT-QSPALNVVSRSKLHGL-IACGGEDGAVECFDMR--MRSS--AARINAVAPAG---------DADQEVT-ALEF 242 (702)
Q Consensus 180 ~~-l~~-h~~~V~~l~~sp~~~l-lasgs~DG~V~iWD~~--t~~~--v~~l~~~~~~~---------~~~~~Vt-slaf 242 (702)
.. +.. .......|+|+|+++. +++=+....|+.+|.. ++.. ..++-...... ..-.... .++.
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 11 222 2335679999999984 5555567889986654 3221 12222110000 0012234 4555
Q ss_pred c-------CCCCCEEEEEeCCCeEEEEEcCCCeEEEEee
Q 005325 243 D-------SNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD 274 (702)
Q Consensus 243 s-------pd~g~~LasGs~DG~V~lwDlrs~~~l~~~~ 274 (702)
. ++ |.++++-+....|+.++ .++....+.+
T Consensus 381 d~~~~~~~~~-g~lyVaD~~N~rIr~i~-~~G~v~TiaG 417 (496)
T 3kya_A 381 KNPDYTGEEE-YDFYFVDRLNFCVRKVT-PEGIVSTYAG 417 (496)
T ss_dssp ECTTCCSSCC-EEEEEEEGGGTEEEEEC-TTCBEEEEEE
T ss_pred ccccccccCC-CeEEEEECCCCEEEEEe-CCCCEEEEec
Confidence 4 45 66677767788999998 4565444433
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.27 E-value=0.024 Score=57.86 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=109.8
Q ss_pred EEEEEe-cC-----CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEECC-----CeEEEEecCC-c---eE
Q 005325 77 LIVSGI-YP-----PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCAD-----RSISLHAKYG-K---HY 139 (702)
Q Consensus 77 llatGs-~d-----g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~D-----~~I~iw~~~g-~---~~ 139 (702)
|++.|+ .+ ..+.+||+.+............. ..++.+ ++..+++++.+ ..+.+++... . ..
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 356665 32 46888998774332211111111 122222 44666777654 3577888763 3 33
Q ss_pred EEec-CC--CccceEEecCCCcEEEEec------CCCEEEEECCCCeEEEEeecCCC--CeEEEEEcCCCCEEEEEEcC-
Q 005325 140 SLRI-PR--MGRDMAYNSWSCDLLCAAS------SPELYRINLEQGRFLSSLNTQSP--ALNVVSRSKLHGLIACGGED- 207 (702)
Q Consensus 140 ~~~i-~~--~~~~l~~~~~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h~~--~V~~l~~sp~~~llasgs~D- 207 (702)
.+.- |. ....++.. +..+++.+. .+.+++||+.+.+....-..... .-.++.+ ++.+++.|+.+
T Consensus 95 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 170 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDG 170 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCC
Confidence 3321 21 11122222 445555442 24589999988765432211111 1222222 56788888764
Q ss_pred ----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeeccCC
Q 005325 208 ----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRVKDHMFD 278 (702)
Q Consensus 208 ----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~~~h~~~ 278 (702)
..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.+ ..|.+||+.+.+...+......
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPMA----TKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CcccceEEEEeCCCCcEEeCCCCC----cccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 46899999876532221111 11122233333 3 6777777764 4699999998876554322111
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCC-----CEEEEEeCCCC
Q 005325 279 SPIVDIKWHQSINTERPKLITTDN-----HIVRIWDPETG 313 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~D-----g~V~IWd~~tg 313 (702)
..-.+++.. ++.-+++++.+ ..|.+||+.+.
T Consensus 244 r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 RCYVGATVL----RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CBSCEEEEE----TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ccceeEEEE----CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 111223333 23334444432 46778888764
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.23 E-value=0.032 Score=58.06 Aligned_cols=163 Identities=8% Similarity=-0.009 Sum_probs=109.1
Q ss_pred CccceEEecCCCcEEEEe-cCCCEEEEECCCCeEEEEeecC-----CC--CeEEEEE---cCCCCEEEEEEc--------
Q 005325 146 MGRDMAYNSWSCDLLCAA-SSPELYRINLEQGRFLSSLNTQ-----SP--ALNVVSR---SKLHGLIACGGE-------- 206 (702)
Q Consensus 146 ~~~~l~~~~~s~~llv~s-~d~~V~vwdl~~g~~~~~l~~h-----~~--~V~~l~~---sp~~~llasgs~-------- 206 (702)
+..++.|+...+.+++++ ..+.|..||+..+........+ .. .+..|.| .|.+.++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 344888888888888888 5788999999866544332221 11 3578999 688777776442
Q ss_pred -----CCeEEEEECC---CCcceeEEecccCCCC-------CCCCeEEEEEcCCCCCEEEEEeCC-CeEEEEEcCCCeEE
Q 005325 207 -----DGAVECFDMR---MRSSAARINAVAPAGD-------ADQEVTALEFDSNGGFLMGVGSST-GKVLIYDLRSSYPI 270 (702)
Q Consensus 207 -----DG~V~iWD~~---t~~~v~~l~~~~~~~~-------~~~~Vtslafspd~g~~LasGs~D-G~V~lwDlrs~~~l 270 (702)
+..|..||+. +++.+..+........ .......|+..++ |+..++++.. +.|..++.......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEEEEESSCEEEEECTTSCCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 6789999999 8888777664310000 1135889999999 9999999988 88888876644222
Q ss_pred EE-eecc---CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 271 RV-KDHM---FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 271 ~~-~~h~---~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
.+ .... .....+.|+++| ++..|++....+.|..+|+.+
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~p---dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDP---HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEET---TTTEEEEESSSSSEEEEECSS
T ss_pred eeeecCCCcccccCcceEEEeC---CCCEEEEEcCCCeEEEEcCCC
Confidence 11 1110 122367999998 344444444588899999884
No 298
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.22 E-value=0.48 Score=55.14 Aligned_cols=262 Identities=15% Similarity=0.106 Sum_probs=147.2
Q ss_pred CCceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEee--ecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceE
Q 005325 62 ETATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFER--HLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHY 139 (702)
Q Consensus 62 ~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~--h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~ 139 (702)
...|+||.-..+|.. -.|+.+| +..||-.... .+.. ......+..+....+ ..|-.++.+| +..++......
T Consensus 21 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~~~-~~~~~~~~~~~~i~~i~~d~~-g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI--WIGSNKG-LFSYDGYSTQ-QHFTYGENNNTRIYCGVIIDN-TYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSCE--EEEESSC-EEEECSSCEE-ECSCTTSTTSSCEEEEEEETT-TEEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCCE--EEEECCC-ccccCCCceE-EEEccCCCCCceEEEEEEcCC-CcEEEEeCCC-eEEEeCCCCEE
Confidence 356899999998865 4455666 5567644321 1111 111222344444444 4566666655 66777664322
Q ss_pred EEecC---CCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee----cCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 005325 140 SLRIP---RMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN----TQSPALNVVSRSKLHGLIACGGEDGAVEC 212 (702)
Q Consensus 140 ~~~i~---~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~----~h~~~V~~l~~sp~~~llasgs~DG~V~i 212 (702)
..... ....++. .....+++++.+ .|+++|..++++..... .....|.++....++.+.+ |+.. -|..
T Consensus 95 ~~~~~~~~~~i~~i~--~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~ 169 (758)
T 3ott_A 95 EQPETDFPTDVRTMA--LQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCR 169 (758)
T ss_dssp CCCSCCCCSCEEEEE--EETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEE
T ss_pred ECcccCCCceEEEEE--ecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhh
Confidence 21111 1111222 134557777765 79999998877643211 1234688888887777665 5554 5778
Q ss_pred EECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCC
Q 005325 213 FDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 213 WD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~ 292 (702)
+|..++.. ..+............|.+|...++ +..|.+|+. +-|..||..+++........ ...|.+|...+
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~-~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~---- 241 (758)
T 3ott_A 170 YIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTT-RQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLALDG---- 241 (758)
T ss_dssp EETTTTEE-EEECCCCCTTCSSCCEEEEEEETT-TTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEEECT----
T ss_pred CccCCCce-EEecCCCccccccceeEEEEEECC-CCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEEEcC----
Confidence 88876543 222222100001245899998877 676777775 45888998876643322111 23578887763
Q ss_pred CCCeEEEeCCCEEEEEeCCCCceeEEecC--------CCCceeEEEEEcCCCEEEEEeCCC
Q 005325 293 ERPKLITTDNHIVRIWDPETGESMTSIEP--------TAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 293 ~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~--------h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
.+.+.+++.+ -|.+++..++... .+.. ....|.++....++ .|.+|+..|
T Consensus 242 ~g~lWigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWiGT~~G 299 (758)
T 3ott_A 242 NGDLLAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEH-NIWLGTDYG 299 (758)
T ss_dssp TCCEEEEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTC-CEEEEESSS
T ss_pred CCCEEEEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCC-CEEEEeCCc
Confidence 6677777754 5788988766543 2221 12357777655544 466777665
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.20 E-value=0.5 Score=53.79 Aligned_cols=153 Identities=11% Similarity=-0.054 Sum_probs=85.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEe-eecCCceEEEEEEcCCCCEEEEEEC--CCeEEEEecCCce
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFE-RHLDSEIINFEVLADDYSKLAFLCA--DRSISLHAKYGKH 138 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~-~h~~~~vv~~~~ls~dg~~Las~s~--D~~I~iw~~~g~~ 138 (702)
.....|++.+.+..|+++-...+.|.+.++..... .+. ..... +. .+++.|....|..... ...|...+..|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~-P~-~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ-PR-AIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-CC-CEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCC-Cc-eEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 35678999998887678877889999999987332 222 22222 22 3445555455655543 3566666666654
Q ss_pred EEEecC---CCccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 005325 139 YSLRIP---RMGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFD 214 (702)
Q Consensus 139 ~~~~i~---~~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD 214 (702)
....+. .....++..+....|+++... +.|.++|+........+.........|++..+ .++++-...+.|...|
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACN 240 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence 433332 223478888888888887654 46888888654322222211122334555443 4444444456666666
Q ss_pred CCCC
Q 005325 215 MRMR 218 (702)
Q Consensus 215 ~~t~ 218 (702)
..++
T Consensus 241 ~~tg 244 (619)
T 3s94_A 241 KYTG 244 (619)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 5544
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.065 Score=54.79 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=112.2
Q ss_pred CCEEEEEEecC--CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEECC----CeEEEEecCCc-eEEEe-c
Q 005325 74 GEFLIVSGIYP--PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCAD----RSISLHAKYGK-HYSLR-I 143 (702)
Q Consensus 74 G~~llatGs~d--g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~D----~~I~iw~~~g~-~~~~~-i 143 (702)
..+|++.|+.+ ..+.+||..+............. ..++.+ ++..+++++.+ ..+.++++... ...+. +
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 35667777764 57888998874332211111110 122222 44566777654 56777787743 33222 2
Q ss_pred CCCccceEEecCCCcEEE-EecC------CCEEEEECCCCeEEEEeecCCC--CeEEEEEcCCCCEEEEEEc--------
Q 005325 144 PRMGRDMAYNSWSCDLLC-AASS------PELYRINLEQGRFLSSLNTQSP--ALNVVSRSKLHGLIACGGE-------- 206 (702)
Q Consensus 144 ~~~~~~l~~~~~s~~llv-~s~d------~~V~vwdl~~g~~~~~l~~h~~--~V~~l~~sp~~~llasgs~-------- 206 (702)
|..............+++ ++.+ ..+++||+.+.+....-..... .-.++.+ ++.+++.|+.
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 221112222222445544 4433 4599999998865433111111 1122222 5677777764
Q ss_pred -CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeeccCCCC
Q 005325 207 -DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRVKDHMFDSP 280 (702)
Q Consensus 207 -DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~~~h~~~~~ 280 (702)
-..+.+||+.+.+-...-..+ .....-.++.+ + +.+++.|+.+ ..|.+||+.+.+...+........
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMI----EARKNHGLVFV--K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred ccceEEEeCCCCCeEEECCCcc----chhhcceEEEE--C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 345889999876432221111 01122223333 3 6677777653 468999999877554322211111
Q ss_pred eEEEEEeeccCCCCCeEEEeC-----CCEEEEEeCCCC
Q 005325 281 IVDIKWHQSINTERPKLITTD-----NHIVRIWDPETG 313 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~-----Dg~V~IWd~~tg 313 (702)
-.+++.. ++..+++++. -..|.+||+.+.
T Consensus 240 ~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1223333 2444445552 356888888764
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.18 E-value=0.36 Score=51.85 Aligned_cols=252 Identities=13% Similarity=0.201 Sum_probs=153.7
Q ss_pred CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCc--eEEEecCCCccceEEecCCC-cEEE
Q 005325 85 PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGK--HYSLRIPRMGRDMAYNSWSC-DLLC 161 (702)
Q Consensus 85 g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~--~~~~~i~~~~~~l~~~~~s~-~llv 161 (702)
.+|.|.|+.+......+...+ +.+..+|....| ..-..+++.++|+... .....++. ++.|..|-. ..+.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~A---dsAIMnP~~~ii-ALrag~~lQiFnle~K~klks~~~~e---~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVI-ALKAGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLNTVA 120 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCC---SEEEECSSSSCE-EEEETTEEEEEETTTTEEEEEEECSS---CCCEEEEEETTEEE
T ss_pred CeEEEEECCCCCcceeccccc---ceeeeCCCCcEE-EEecCCeEEEEchHHhhhhcceecCC---CceEEEecCCCeEE
Confidence 478889998833333333333 345566765544 4445899999999843 33333333 455555543 3555
Q ss_pred EecCCCEEEEECCC-CeEEEEeecCC----CCeEEEEEcCCCCEEEEEEc-------CCeEEEEECCCCcceeEEecccC
Q 005325 162 AASSPELYRINLEQ-GRFLSSLNTQS----PALNVVSRSKLHGLIACGGE-------DGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 162 ~s~d~~V~vwdl~~-g~~~~~l~~h~----~~V~~l~~sp~~~llasgs~-------DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
--.+..||.|+++. ..+++.|.-|. ..|.....+++..+++..+- .|.+.+|....+ .-+.+.+|
T Consensus 121 lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh-- 197 (494)
T 1bpo_A 121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH-- 197 (494)
T ss_dssp EECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS--
T ss_pred EEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee--
Confidence 55667899999974 34556665553 35767777888887765442 477889988743 34555555
Q ss_pred CCCCCCCeEEEEEc--CCCCCEEEEEeC---CCeEEEEEcCCC---e------EEEE---eeccCCCCeEEEEEeeccCC
Q 005325 230 AGDADQEVTALEFD--SNGGFLMGVGSS---TGKVLIYDLRSS---Y------PIRV---KDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 230 ~~~~~~~Vtslafs--pd~g~~LasGs~---DG~V~lwDlrs~---~------~l~~---~~h~~~~~I~sl~fsp~~~~ 292 (702)
......+.+. +.....|+.+.. .+.++|.++... . .+.+ .+.....| .++..++ .
T Consensus 198 ----aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP-vamqvs~---k 269 (494)
T 1bpo_A 198 ----AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISE---K 269 (494)
T ss_dssp ----EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE-EEEEEET---T
T ss_pred ----eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce-eEEEecc---c
Confidence 1111112111 110112333322 278999998542 1 1111 11223344 4677775 3
Q ss_pred CCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 293 ERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 293 ~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.+-+.+-+.-|.|.+||+.||.++..-.-...+|-..|.+..++=++..+..|+|....+..
T Consensus 270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 45566677899999999999999988777667777666776666677888999988877655
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.11 E-value=0.19 Score=52.19 Aligned_cols=218 Identities=8% Similarity=0.055 Sum_probs=118.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecCCceE-EEecCC-----CccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEee
Q 005325 110 FEVLADDYSKLAFLCADRSISLHAKYGKHY-SLRIPR-----MGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLN 183 (702)
Q Consensus 110 ~~~ls~dg~~Las~s~D~~I~iw~~~g~~~-~~~i~~-----~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~ 183 (702)
.+.+.++...++ ++..+.|....-.|... .+..+. ....+.+.+ ..+++++..+.|++ ....|+.-..+.
T Consensus 40 ~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~-S~DgG~tW~~~~ 115 (327)
T 2xbg_A 40 DMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH-TTDGGQSWSQIP 115 (327)
T ss_dssp EEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE-ESSTTSSCEECC
T ss_pred EEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE-ECCCCCCceECc
Confidence 334444445555 56677663332234332 222211 122566653 45667776676655 333333222221
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 005325 184 ---TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVL 260 (702)
Q Consensus 184 ---~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~ 260 (702)
.+...+..|.+.+++.+++++ .+|.|.. ....+..-..+... ....+.++++.|+ +.+++++...+..+
T Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~-----~~~~~~~~~~~~~-~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 116 LDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE-----AIGVMRNLNRSPS-GEYVAVSSRGSFYS 187 (327)
T ss_dssp CCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS-----CCCCEEEEEECTT-SCEEEEETTSSEEE
T ss_pred cccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC-----CCcceEEEEEcCC-CcEEEEECCCcEEE
Confidence 123457778877666666655 4565432 12223333333222 1357899999998 88887765544444
Q ss_pred EEEc--CCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecC----CCCceeEEEEEcC
Q 005325 261 IYDL--RSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEP----TAGKINDVCVFKD 334 (702)
Q Consensus 261 lwDl--rs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~----h~~~I~~v~~~p~ 334 (702)
-+|- .+-+++. ... ...+..+.+.| ++.+++.+.++.|.+++...|+....+.. +...+.++++.++
T Consensus 188 S~d~gG~tW~~~~-~~~--~~~~~~~~~~~----~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 188 TWEPGQTAWEPHN-RTT--SRRLHNMGFTP----DGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp EECTTCSSCEEEE-CCS--SSCEEEEEECT----TSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred EeCCCCCceeECC-CCC--CCccceeEECC----CCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 4443 2333332 122 45788999886 56788888888888875444555544432 2345888988887
Q ss_pred CCEEEEEeCCCcE
Q 005325 335 SGLLLLALDCSQI 347 (702)
Q Consensus 335 ~~~l~~a~~d~~I 347 (702)
+.++++ +.++.|
T Consensus 261 ~~~~~~-g~~g~i 272 (327)
T 2xbg_A 261 NEVWLA-GGAGAL 272 (327)
T ss_dssp SCEEEE-ESTTCE
T ss_pred CEEEEE-eCCCeE
Confidence 665554 445554
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.10 E-value=0.59 Score=53.24 Aligned_cols=195 Identities=11% Similarity=-0.013 Sum_probs=118.0
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCce--EEEeeecCCceEEEEEEcCCCCEEEEE-ECCCeEEEEecCCceEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLS--LKFERHLDSEIINFEVLADDYSKLAFL-CADRSISLHAKYGKHYSL 141 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~--~~~~~h~~~~vv~~~~ls~dg~~Las~-s~D~~I~iw~~~g~~~~~ 141 (702)
+..|+|++.+..|+.+-...+.|..+++.... ...... ...-..-+++...+..|+.+ ...+.|.+.+..|....+
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~ 120 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 120 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE
Confidence 56789999888877777777889999887642 111111 11123445566655666554 457889999998865544
Q ss_pred ec---CCCccceEEecCCCcEEEEecC--CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEEC
Q 005325 142 RI---PRMGRDMAYNSWSCDLLCAASS--PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACG-GEDGAVECFDM 215 (702)
Q Consensus 142 ~i---~~~~~~l~~~~~s~~llv~s~d--~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasg-s~DG~V~iWD~ 215 (702)
.+ ....+.|++.+....|+.+... +.|.+.++............-...+.|++++....|..+ +..+.|...|+
T Consensus 121 l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 121 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 33 2344589999888888888743 568888876433322232344568999999876554444 45678999998
Q ss_pred CCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe
Q 005325 216 RMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY 268 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~ 268 (702)
........+... ......|++..+ ..+++-...+.|...|..+++
T Consensus 201 dG~~~~~~~~~~------~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 201 DGTNRQAVVKGS------LPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCCEEC---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred CCCccEEEEeCC------CCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 754332222211 122346777644 444555567888888887654
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.01 E-value=0.0028 Score=73.70 Aligned_cols=202 Identities=7% Similarity=-0.057 Sum_probs=118.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCc----eE-EEeeecCCceEEEEEEcCCCCEE-EEEECCCeEEEEecCCc
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQL----SL-KFERHLDSEIINFEVLADDYSKL-AFLCADRSISLHAKYGK 137 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~----~~-~~~~h~~~~vv~~~~ls~dg~~L-as~s~D~~I~iw~~~g~ 137 (702)
.+..|+|++++..|+++-...+.|..+++... .. .+....-..+ ..+++.+.+..| ++-...+.|.+.+..+.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P-~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP-DGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C-CCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc-ceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 35678899988886777777789999998751 11 1110000011 123344333334 44345678888888876
Q ss_pred eEEEecCC---CccceEEecCCCcEEEEecC--CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC-CEEEEEEcCCeEE
Q 005325 138 HYSLRIPR---MGRDMAYNSWSCDLLCAASS--PELYRINLEQGRFLSSLNTQSPALNVVSRSKLH-GLIACGGEDGAVE 211 (702)
Q Consensus 138 ~~~~~i~~---~~~~l~~~~~s~~llv~s~d--~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~-~llasgs~DG~V~ 211 (702)
.....+.. ....+++.+....||++... +.|+++++........+.......+.|+|+|++ .++++-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 65544432 33477877777777776643 578888775432211122223456789999876 5555555678899
Q ss_pred EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 212 CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
.+|+........+... ........|++..+ .++++....+.|..+|..+++.+.+
T Consensus 566 ~~d~dG~~~~~~~~~~----~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDE----KRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp EECSSSSCCEEECCCS----SSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEccCCCceEEEEecC----CcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 9998743322222211 00123445666543 4555556778999999888876653
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.99 E-value=0.043 Score=56.07 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=107.8
Q ss_pred EEEEEEecC----CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEECC-----CeEEEEecCCce-EEEec
Q 005325 76 FLIVSGIYP----PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCAD-----RSISLHAKYGKH-YSLRI 143 (702)
Q Consensus 76 ~llatGs~d----g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~D-----~~I~iw~~~g~~-~~~~i 143 (702)
.|++.|+.+ ..+.+||+.+............. ..++.+ ++..+++++.+ ..+.+++..... ..+..
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 346666654 35788888774332211111110 122222 44566666644 357777776432 22221
Q ss_pred CCCcc-ceEEecCCCcE-EEEecCC-----CEEEEECCCCeEEEE--eecCCCCeEEEEEcCCCCEEEEEEcC-------
Q 005325 144 PRMGR-DMAYNSWSCDL-LCAASSP-----ELYRINLEQGRFLSS--LNTQSPALNVVSRSKLHGLIACGGED------- 207 (702)
Q Consensus 144 ~~~~~-~l~~~~~s~~l-lv~s~d~-----~V~vwdl~~g~~~~~--l~~h~~~V~~l~~sp~~~llasgs~D------- 207 (702)
....+ ..........+ ++++.++ .+.+||+.+.+.... +........++.+ ++.+++.|+.+
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccc
Confidence 11112 11111123444 4454442 488899988865432 1111111222222 56677777653
Q ss_pred CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeeccCCCCeE
Q 005325 208 GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRVKDHMFDSPIV 282 (702)
Q Consensus 208 G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~~~h~~~~~I~ 282 (702)
..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.+ ..|.+||+.+.+...+........-.
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMS----TRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp CCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cEEEEEeCCCCcEEECCCCc----cccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 45899999876532221111 11122233333 3 6777777764 46999999988765543321111112
Q ss_pred EEEEeeccCCCCCeEEEeCC-----CEEEEEeCCCC
Q 005325 283 DIKWHQSINTERPKLITTDN-----HIVRIWDPETG 313 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss~D-----g~V~IWd~~tg 313 (702)
+++.. ++.-+++++.+ ..|.+||+.+.
T Consensus 246 ~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 246 GVCAV----NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEEE----TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEEEE----CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 23333 23334444432 34778887764
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.97 E-value=0.16 Score=52.81 Aligned_cols=155 Identities=8% Similarity=0.010 Sum_probs=102.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecC-CceEEEecCCC---------ccceEEe---cCCCcEEEEec------------
Q 005325 110 FEVLADDYSKLAFLCADRSISLHAKY-GKHYSLRIPRM---------GRDMAYN---SWSCDLLCAAS------------ 164 (702)
Q Consensus 110 ~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~~i~~~---------~~~l~~~---~~s~~llv~s~------------ 164 (702)
..|-..++..+++.-..++|..|+.. +....+.++.. ...+.+. +. ..|+++..
T Consensus 18 ~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 18 TIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCS
T ss_pred ccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccccccc
Confidence 34444444444444478999999998 45555545431 1255663 44 55665433
Q ss_pred --CCCEEEEECC---CCeEEEEeec-------------CCCCeEEEEEcCCCCEEEEEEcC-CeEEEEECCCCcceeEEe
Q 005325 165 --SPELYRINLE---QGRFLSSLNT-------------QSPALNVVSRSKLHGLIACGGED-GAVECFDMRMRSSAARIN 225 (702)
Q Consensus 165 --d~~V~vwdl~---~g~~~~~l~~-------------h~~~V~~l~~sp~~~llasgs~D-G~V~iWD~~t~~~v~~l~ 225 (702)
+..|..+|+. +++.+..... -....+.+++.++|+..++++.- +.|..++.... .+..+.
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~ 175 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFA 175 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeee
Confidence 4569999999 8876654432 11248899999999999999998 88888888744 333332
Q ss_pred cccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC
Q 005325 226 AVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS 267 (702)
Q Consensus 226 ~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~ 267 (702)
............+.|+++|+ |..|++....|.|..+|+...
T Consensus 176 ~~~~~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECSSS
T ss_pred ecCCCcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCCC
Confidence 22111112345789999999 888888877999999999853
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.88 E-value=0.54 Score=48.70 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=123.5
Q ss_pred eecccCCCceeEEEECCCCCEEEEEEecCCcEEEEEcCC---ceEEEeeecC---CceEEEEEEcCCCCEEEEEEC----
Q 005325 56 IQDLWFETATTKIRETPDGEFLIVSGIYPPQVKVYELRQ---LSLKFERHLD---SEIINFEVLADDYSKLAFLCA---- 125 (702)
Q Consensus 56 iqd~~~~~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~---~~~~~~~h~~---~~vv~~~~ls~dg~~Las~s~---- 125 (702)
+..+.+++.|.--+|-.+...-|+|. ..|.-|++.. ....|.+|.. ..++... .+++.++++..+-
T Consensus 100 lks~~~~e~VvfWkWis~~~L~lVT~---taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~-~d~~~kW~~l~GI~~~~ 175 (365)
T 2xzh_A 100 MKAHTMTDDVTFWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR-TDAKQKWLLLTGISAQQ 175 (365)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEES---SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEE-ECTTSCEEEEEEEEEET
T ss_pred hcceecCCccEEEEecCCCeEEEEcC---CcEEEEcccCCCCCceeeecchhcccceEEEEE-ECCCCCEEEEEeEeccC
Confidence 56677888888888877777656664 5799999875 4446777643 3344443 4566677754443
Q ss_pred ---CCeEEEEecCCceEEEecCCCccceEEecC-----CCcEEEEec----CCCEEEEECCCC---e--E----EEEeec
Q 005325 126 ---DRSISLHAKYGKHYSLRIPRMGRDMAYNSW-----SCDLLCAAS----SPELYRINLEQG---R--F----LSSLNT 184 (702)
Q Consensus 126 ---D~~I~iw~~~g~~~~~~i~~~~~~l~~~~~-----s~~llv~s~----d~~V~vwdl~~g---~--~----~~~l~~ 184 (702)
.|.+.+|+........ +..+..+..-... .+.|++-+. .+.+++.++... . + +..+-.
T Consensus 176 ~~v~G~mQLYS~er~~sQ~-ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp 254 (365)
T 2xzh_A 176 NRVVGAMQLYSVDRKVSQP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 254 (365)
T ss_dssp TEEEEEEEEEETTTTEEEE-ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC
T ss_pred CccceeEEEEeecccccce-eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC
Confidence 3567788776433222 2222222221111 112333222 257888887432 1 1 111111
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 005325 185 ---QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI 261 (702)
Q Consensus 185 ---h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l 261 (702)
..+..-++.+++...++..-+.-|.|.+||+.++.++..-... ...|-.-+.+.. ..-+++-...|.|.-
T Consensus 255 pea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS------~d~iF~ta~~~~-~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------GETIFVTAPHEA-TAGIIGVNRKGQVLS 327 (365)
T ss_dssp TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEEEGG-GTEEEEEETTCEEEE
T ss_pred ccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC------CCceEEecccCC-CCcEEEEcCCCEEEE
Confidence 2345668889999999999999999999999999999888877 566766666554 344444457787776
Q ss_pred EEcCCCe
Q 005325 262 YDLRSSY 268 (702)
Q Consensus 262 wDlrs~~ 268 (702)
..+....
T Consensus 328 v~v~~~~ 334 (365)
T 2xzh_A 328 VCVEEEN 334 (365)
T ss_dssp EEECTTT
T ss_pred EEECccc
Confidence 6665443
No 308
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.85 E-value=0.28 Score=54.04 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=130.6
Q ss_pred EEEEEcC-CCCEEEEEE-CCCeEEEEecCCceEEEecCCC------ccceEE-------ecCCCcEEEEecCC-------
Q 005325 109 NFEVLAD-DYSKLAFLC-ADRSISLHAKYGKHYSLRIPRM------GRDMAY-------NSWSCDLLCAASSP------- 166 (702)
Q Consensus 109 ~~~~ls~-dg~~Las~s-~D~~I~iw~~~g~~~~~~i~~~------~~~l~~-------~~~s~~llv~s~d~------- 166 (702)
..+.++| +...|..+. ....|++.+..+......+... ...+++ .+....|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3455666 344444443 3456777787765544433332 236677 66666688887665
Q ss_pred CEEEEECCC-CeEE-----EEeecCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEECC-------CCcc-----------e
Q 005325 167 ELYRINLEQ-GRFL-----SSLNTQSPALNVVSRSKL-HGLIACGGEDGAVECFDMR-------MRSS-----------A 221 (702)
Q Consensus 167 ~V~vwdl~~-g~~~-----~~l~~h~~~V~~l~~sp~-~~llasgs~DG~V~iWD~~-------t~~~-----------v 221 (702)
.|++++... |.+. ..+... ...+.++++|+ +.++++-..++.|..+|+. ++.. .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred eEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 277776544 2332 122211 23467888994 5667777778999999997 5543 1
Q ss_pred eE-EecccCCCCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcC--CCeE---EEEeec------cCC-------CCe
Q 005325 222 AR-INAVAPAGDADQEVTALEFDSNGGFLMG-VGSSTGKVLIYDLR--SSYP---IRVKDH------MFD-------SPI 281 (702)
Q Consensus 222 ~~-l~~~~~~~~~~~~Vtslafspd~g~~La-sGs~DG~V~lwDlr--s~~~---l~~~~h------~~~-------~~I 281 (702)
.. +... .....+.|+|+|+ |.+|. +-+....|+.+|.. .+.. ..+.+. ..+ ...
T Consensus 301 ~~l~~~~-----~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 301 KQLFTIA-----DPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp EEEEECS-----SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ceeEecC-----CCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 12 2222 1245689999999 88544 44567789886654 3322 222221 000 012
Q ss_pred E-EEEEee-cc--CCCCCeEEEe-CCCEEEEEeCCCCceeEEecCC------------------------CCceeEEEEE
Q 005325 282 V-DIKWHQ-SI--NTERPKLITT-DNHIVRIWDPETGESMTSIEPT------------------------AGKINDVCVF 332 (702)
Q Consensus 282 ~-sl~fsp-~~--~~~~~ll~ss-~Dg~V~IWd~~tg~~l~~i~~h------------------------~~~I~~v~~~ 332 (702)
. .++... .+ ...+.|+++- ..+.|+.++ .+|. +.++.+. -.....|++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 3 333320 00 0133444443 578899998 4564 3344221 0135679999
Q ss_pred cCCCEEEEEe-CCCcEEEEEcCC
Q 005325 333 KDSGLLLLAL-DCSQIPSYFIPD 354 (702)
Q Consensus 333 p~~~~l~~a~-~d~~I~~~~ip~ 354 (702)
++.+.|+++. ...+|+.+.+..
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 9745555554 566787776543
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.84 E-value=0.26 Score=51.88 Aligned_cols=217 Identities=11% Similarity=0.048 Sum_probs=116.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecCCceEEE-ecC------CCccceEEecC---CCcEEEEecC------CCEEEEEC
Q 005325 110 FEVLADDYSKLAFLCADRSISLHAKYGKHYSL-RIP------RMGRDMAYNSW---SCDLLCAASS------PELYRINL 173 (702)
Q Consensus 110 ~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~-~i~------~~~~~l~~~~~---s~~llv~s~d------~~V~vwdl 173 (702)
.+.+.+++.. +++..++.|.+++ .+....+ .++ .....|++++. +..|+++... +.|.+|++
T Consensus 35 ~ia~~pdG~l-~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 35 ALAFLPDGGM-LIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEEECTTSCE-EEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEEcCCCeE-EEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 4456778874 4456678898888 4432221 122 12237888876 5678777653 57888988
Q ss_pred CCCeE------EEEee---cCCCCeEEEEEcCCCCEEEEEEc-------------CCeEEEEECCCC------------c
Q 005325 174 EQGRF------LSSLN---TQSPALNVVSRSKLHGLIACGGE-------------DGAVECFDMRMR------------S 219 (702)
Q Consensus 174 ~~g~~------~~~l~---~h~~~V~~l~~sp~~~llasgs~-------------DG~V~iWD~~t~------------~ 219 (702)
..+.. +..+. ........|+|.|++.++++-+. .|.|.-+|+... .
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 192 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA 192 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence 75421 12232 11123468999999987777442 256666665431 0
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeE------EEEEcCCCe------------------EEEEeec
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKV------LIYDLRSSY------------------PIRVKDH 275 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V------~lwDlrs~~------------------~l~~~~h 275 (702)
....+... -.....|+|+|+.+.++++-.....+ .|.-+..+. |+....+
T Consensus 193 ~~~i~a~G------~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 193 RPEVYSLG------HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp CTTEEEEC------CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CccEEEEc------CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 01111111 13356789999426655554333331 122222221 2222211
Q ss_pred cCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCce------eEE-ecCCCCceeEEEEEcCCCEEEEEe
Q 005325 276 MFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETGES------MTS-IEPTAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 276 ~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~~------l~~-i~~h~~~I~~v~~~p~~~~l~~a~ 342 (702)
......++|. .+.++++. ..+.|...++..... ... +.. ...+.+|++.|++.++++..
T Consensus 267 --~~ap~G~~~~-----~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 --GFPPGNLAFF-----RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp --CCCEEEEEEE-----TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred --CCCCcceEEE-----CCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 2345677775 44555555 567777777654321 112 222 45788999999987666654
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.17 Score=51.61 Aligned_cols=188 Identities=7% Similarity=-0.000 Sum_probs=97.1
Q ss_pred CCCEEEEEEecC----CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEECC------CeEEEEecCCceE-
Q 005325 73 DGEFLIVSGIYP----PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCAD------RSISLHAKYGKHY- 139 (702)
Q Consensus 73 DG~~llatGs~d----g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~D------~~I~iw~~~g~~~- 139 (702)
++. |++.|+.+ ..+.+||+.+............. ..++.+ ++..+++++.+ ..+.+|+......
T Consensus 55 ~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 444 47777754 57888998874332211111111 122223 44666777654 4577888774332
Q ss_pred EEe-cCCCccceEEecCCCcEEEEec----------CCCEEEEECCCCeEEEEeecCCCC-eEEEEEcCCCCEEEEEEcC
Q 005325 140 SLR-IPRMGRDMAYNSWSCDLLCAAS----------SPELYRINLEQGRFLSSLNTQSPA-LNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 140 ~~~-i~~~~~~l~~~~~s~~llv~s~----------d~~V~vwdl~~g~~~~~l~~h~~~-V~~l~~sp~~~llasgs~D 207 (702)
.+. +|..............+++.+. .+.+++||+.+.+....-...... -.+++.. ++.+++.|+.+
T Consensus 132 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 210 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQN 210 (306)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred eCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence 221 1211111111222445555442 456899999988654322111111 1122222 56788887754
Q ss_pred -----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEE
Q 005325 208 -----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIR 271 (702)
Q Consensus 208 -----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~ 271 (702)
..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.+ ..|.+||+.+.+...
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMP----WKGVTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCS----CCBSCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCC----CCccceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 46899999876422111111 11223334444 3 6788888754 568999998876543
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.78 E-value=0.17 Score=51.50 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=95.3
Q ss_pred CCCEEEEEEecC-----CcEEEEEcCCceEEEeeecCCc--eEEEEEEcCCCCEEEEEECCC-----eEEEEecCCce-E
Q 005325 73 DGEFLIVSGIYP-----PQVKVYELRQLSLKFERHLDSE--IINFEVLADDYSKLAFLCADR-----SISLHAKYGKH-Y 139 (702)
Q Consensus 73 DG~~llatGs~d-----g~I~vwdl~~~~~~~~~h~~~~--vv~~~~ls~dg~~Las~s~D~-----~I~iw~~~g~~-~ 139 (702)
++. |++.|+.+ ..+.+||+.+............ -..++.+ ++..+++++.++ .+.++++.... .
T Consensus 61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTE-EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCE-EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 444 47777754 3588899877433222111111 1122223 446667776553 46677776432 2
Q ss_pred EEecCCCcc-ceEEecCCCcEEEEe-c-------CCCEEEEECCCCeEEEE--eecCCCCeEEEEEcCCCCEEEEEEcC-
Q 005325 140 SLRIPRMGR-DMAYNSWSCDLLCAA-S-------SPELYRINLEQGRFLSS--LNTQSPALNVVSRSKLHGLIACGGED- 207 (702)
Q Consensus 140 ~~~i~~~~~-~l~~~~~s~~llv~s-~-------d~~V~vwdl~~g~~~~~--l~~h~~~V~~l~~sp~~~llasgs~D- 207 (702)
.+......+ ..........+++.+ . ...+++||+.+.+.... +........++.+ ++.+++.|+.+
T Consensus 138 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 215 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDG 215 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSS
T ss_pred ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCC
Confidence 222111112 222222244555543 2 34689999998865432 2111111222222 56788888764
Q ss_pred ----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCCeEEE
Q 005325 208 ----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG-----KVLIYDLRSSYPIR 271 (702)
Q Consensus 208 ----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG-----~V~lwDlrs~~~l~ 271 (702)
..|.+||+.+.+-...-... .......++.+ + +..++.|+.++ .|.+||+.+.+...
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMN----MCRRNAGVCAV--N-GLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CcccceEEEEeCCCCCEeeCCCCC----CccccCeEEEE--C-CEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 46899999876532221111 00122223333 3 67777877653 48999998876544
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.72 E-value=0.11 Score=55.84 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-------
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY------- 268 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~------- 268 (702)
.++.-++++- ++.||+-++.....-+.+...... .-..|..+..+|+ |.+||+.+. ..|.|..+-.+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i--~f~~i~qlvlSps-G~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL--VLDDTFHVISSTS-GDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC--CCCTTCEEEECTT-SSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCccc--ccCceeEEEECCC-CCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3444444433 377888887755455555554000 0236888999999 999998654 578888876211
Q ss_pred ---EE--EEeec-----cCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCC--ceeEEec---------CCCCcee
Q 005325 269 ---PI--RVKDH-----MFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETG--ESMTSIE---------PTAGKIN 327 (702)
Q Consensus 269 ---~l--~~~~h-----~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg--~~l~~i~---------~h~~~I~ 327 (702)
++ ..... ....+|..+.|||....+..+|+-.+|++|++||+... ++. .+. .+...|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 11 11111 12478999999997766788999999999999999852 233 222 2225788
Q ss_pred EEEEEcCCCEEEEEe--CCCcEEEE
Q 005325 328 DVCVFKDSGLLLLAL--DCSQIPSY 350 (702)
Q Consensus 328 ~v~~~p~~~~l~~a~--~d~~I~~~ 350 (702)
++||.+++-.|.+.+ ++|.|+..
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999998766666655 67777654
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.68 E-value=0.94 Score=48.72 Aligned_cols=199 Identities=9% Similarity=0.151 Sum_probs=119.0
Q ss_pred EEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCCceEEEec---
Q 005325 67 KIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYGKHYSLRI--- 143 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~~i--- 143 (702)
+.-.+|..+. +|.=. ..++.|||+.+....-.......|+-..|+++ +.|+.. .+..|..|++.|......+
T Consensus 70 sAIMnP~~~i-iALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l~lV-T~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 70 SAIMNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALV-TDNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp EEEECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEEEEE-CSSEEEEEESSSSCCCEEEEEC
T ss_pred eeeeCCCCcE-EEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--CeEEEE-cCCeeEEecccCCCCchhheec
Confidence 4567888877 44443 67899999988443222223556788889987 455444 4668999999763322221
Q ss_pred -CC--CccceEEecCCCc--E-EEEe--c----CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCC---CEEEEEEcC-
Q 005325 144 -PR--MGRDMAYNSWSCD--L-LCAA--S----SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLH---GLIACGGED- 207 (702)
Q Consensus 144 -~~--~~~~l~~~~~s~~--l-lv~s--~----d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~---~llasgs~D- 207 (702)
+. ...-+.|...... + ++|- . .|.+.+|..+.+.. +.+.+|......+.+.-+. .+|+.+...
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 11 1123333333322 2 2222 1 24577788776543 5677786544333332111 456665553
Q ss_pred --CeEEEEECCCC---c---ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 005325 208 --GAVECFDMRMR---S---SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRV 272 (702)
Q Consensus 208 --G~V~iWD~~t~---~---~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~ 272 (702)
+.+.|-++... . .........+......-..++..++. -..+..-+.-|.|++||+.++.++..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCceEEEEecccceeeee
Confidence 78999988542 1 11122222222333456678889988 77888889999999999999998864
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.66 E-value=0.19 Score=51.06 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCEEEEECCCCe---EEE--EeecCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCcceeEEecccCCCCCCC
Q 005325 166 PELYRINLEQGR---FLS--SLNTQSPALNVVSRSKLHGLIACGGED-----GAVECFDMRMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 166 ~~V~vwdl~~g~---~~~--~l~~h~~~V~~l~~sp~~~llasgs~D-----G~V~iWD~~t~~~v~~l~~~~~~~~~~~ 235 (702)
+.+++||+.+.. ... .+........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+. ...
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~ 151 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT----ARE 151 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS----CCB
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC----Ccc
Confidence 469999998876 332 22211112222222 56788887754 368999998765332222221 012
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-----CCEE
Q 005325 236 EVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD-----NHIV 305 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-----Dg~V 305 (702)
.-.++.+ + +..++.|+.+ ..|.+||+.+.+...+........-.+++.. ++.-+++++. -..|
T Consensus 152 ~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v 224 (301)
T 2vpj_A 152 GAGLVVA--S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL----NDHIYVVGGFDGTAHLSSV 224 (301)
T ss_dssp SCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCE
T ss_pred cceEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE----CCEEEEEeCCCCCcccceE
Confidence 2223333 4 6777777654 4689999998876554322111111233333 2333444443 3568
Q ss_pred EEEeCCCCc
Q 005325 306 RIWDPETGE 314 (702)
Q Consensus 306 ~IWd~~tg~ 314 (702)
.+||+.+.+
T Consensus 225 ~~yd~~~~~ 233 (301)
T 2vpj_A 225 EAYNIRTDS 233 (301)
T ss_dssp EEEETTTTE
T ss_pred EEEeCCCCc
Confidence 999998754
No 315
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.65 E-value=0.25 Score=50.63 Aligned_cols=188 Identities=6% Similarity=0.007 Sum_probs=94.8
Q ss_pred EEEEEEecCCcEEEEEcCCceEEEeeec-CCceEEEEEEcCCCCEEEEEEC-----C--C----eEEEEecCCceE-EEe
Q 005325 76 FLIVSGIYPPQVKVYELRQLSLKFERHL-DSEIINFEVLADDYSKLAFLCA-----D--R----SISLHAKYGKHY-SLR 142 (702)
Q Consensus 76 ~llatGs~dg~I~vwdl~~~~~~~~~h~-~~~vv~~~~ls~dg~~Las~s~-----D--~----~I~iw~~~g~~~-~~~ 142 (702)
.|++.|+ ..+.+||..+..-....-. ...-........++..+++++. . . .+.+++...... .+.
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 3456666 5789999888543321110 1111233333456677788873 1 1 255667664332 221
Q ss_pred -cCCCccceEEecCCCcEEEEec-C--------CCEEEEECCCCeEEEEeecCCCCe-EEEEEcCCCCEEEEEEc-C---
Q 005325 143 -IPRMGRDMAYNSWSCDLLCAAS-S--------PELYRINLEQGRFLSSLNTQSPAL-NVVSRSKLHGLIACGGE-D--- 207 (702)
Q Consensus 143 -i~~~~~~l~~~~~s~~llv~s~-d--------~~V~vwdl~~g~~~~~l~~h~~~V-~~l~~sp~~~llasgs~-D--- 207 (702)
+|..............+++.+. + +.+++||+.+.+....-....... .+++. -++.+++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCc
Confidence 1211111122222445554433 1 359999999886543211111111 12222 35568888876 2
Q ss_pred --CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEe
Q 005325 208 --GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG-----KVLIYDLRSSYPIRVK 273 (702)
Q Consensus 208 --G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG-----~V~lwDlrs~~~l~~~ 273 (702)
..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.++ .|.+||+.+.+...+.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQ----TARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCS----SCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred ccceEEEEeCCCCeEEECCCCC----CchhceEEEEE--C-CEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 46899999876422111111 11222233333 3 67777777654 5889999988765543
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.57 E-value=0.25 Score=50.69 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=85.7
Q ss_pred EEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEECC--------CeEEEEecCCceEE-Ee-cCCCccceEEec
Q 005325 87 VKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCAD--------RSISLHAKYGKHYS-LR-IPRMGRDMAYNS 154 (702)
Q Consensus 87 I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~D--------~~I~iw~~~g~~~~-~~-i~~~~~~l~~~~ 154 (702)
+.+||+.+............- ..++.+ ++..+++++.+ ..+.+++....... +. +|..........
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778888774332211111111 122222 44555666632 45777777743322 21 122111222222
Q ss_pred CCCcEEEEe-c------CCCEEEEECCCCeEEEEeecCCC--CeEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCcc
Q 005325 155 WSCDLLCAA-S------SPELYRINLEQGRFLSSLNTQSP--ALNVVSRSKLHGLIACGGEDG-----AVECFDMRMRSS 220 (702)
Q Consensus 155 ~s~~llv~s-~------d~~V~vwdl~~g~~~~~l~~h~~--~V~~l~~sp~~~llasgs~DG-----~V~iWD~~t~~~ 220 (702)
....+++.+ . .+.+++||+.+.+....-..... .-.++.+ ++.+++.|+.++ .|.+||+.+.+-
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 334455444 3 14699999998865432111111 1122222 567888888754 588999987643
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeEEEEEcCCCeEEEE
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST--------------GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D--------------G~V~lwDlrs~~~l~~ 272 (702)
...-..+ .......++.+ + +.+++.|+.+ ..|.+||+.+.+...+
T Consensus 225 ~~~~~~p----~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 225 APFEAFP----QERSSLSLVSL--V-GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEECCCS----SCCBSCEEEEE--T-TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCC----CcccceeEEEE--C-CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2221111 11222233333 3 6677777653 2477888888765443
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.55 E-value=0.16 Score=52.09 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=93.9
Q ss_pred CCCEEEEEEecC----CcEEEEEcCCceEEEeeecCCce--EEEEEEcCCCCEEEEEEC----C-----CeEEEEecCCc
Q 005325 73 DGEFLIVSGIYP----PQVKVYELRQLSLKFERHLDSEI--INFEVLADDYSKLAFLCA----D-----RSISLHAKYGK 137 (702)
Q Consensus 73 DG~~llatGs~d----g~I~vwdl~~~~~~~~~h~~~~v--v~~~~ls~dg~~Las~s~----D-----~~I~iw~~~g~ 137 (702)
++.. ++.|+.. ..+.+||+.+............. ..++.+ ++..+++++. + ..+.+++....
T Consensus 24 ~~~i-~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLI-YTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCE-EEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEE-EEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4444 6666642 36888998774332221111110 122222 4455566654 2 35677777643
Q ss_pred eE-EEe-cC--CCccceEEecCCCcEEEEec------CCCEEEEECCCCeEEEEeecC--CCCeEEEEEcCCCCEEEEEE
Q 005325 138 HY-SLR-IP--RMGRDMAYNSWSCDLLCAAS------SPELYRINLEQGRFLSSLNTQ--SPALNVVSRSKLHGLIACGG 205 (702)
Q Consensus 138 ~~-~~~-i~--~~~~~l~~~~~s~~llv~s~------d~~V~vwdl~~g~~~~~l~~h--~~~V~~l~~sp~~~llasgs 205 (702)
.. .+. +| .....++. ....+++.+. ...+.+||+.+.+....-... ...-.++.+ ++.+++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 32 221 11 11112222 2445555432 246899999887654321111 111222223 567888887
Q ss_pred cC-----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEE
Q 005325 206 ED-----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 206 ~D-----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~ 272 (702)
.+ ..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.+ ..|.+||+.+.+...+
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMN----TIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCS----SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCC----CccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 64 46899999876422111111 11222233333 3 6777777664 5699999998775543
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.48 E-value=1.1 Score=47.07 Aligned_cols=216 Identities=11% Similarity=0.035 Sum_probs=111.8
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeee----cCCceEEEEEEcCC---CCEEEEEEC-C-----CeEEE
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERH----LDSEIINFEVLADD---YSKLAFLCA-D-----RSISL 131 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h----~~~~vv~~~~ls~d---g~~Las~s~-D-----~~I~i 131 (702)
...|+|.|||++ +++ ...+.|.+++ ......+... ....-..-+.++++ +..|..+.. . ..|..
T Consensus 33 P~~ia~~pdG~l-~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGM-LIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCE-EEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeE-EEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 468999999986 444 4569999998 3311111100 01112344567777 445544433 2 55666
Q ss_pred EecCCc----eE-E-EecC------CCccceEEecCCCcEEEEecC--------------CCEEEEECCCC---------
Q 005325 132 HAKYGK----HY-S-LRIP------RMGRDMAYNSWSCDLLCAASS--------------PELYRINLEQG--------- 176 (702)
Q Consensus 132 w~~~g~----~~-~-~~i~------~~~~~l~~~~~s~~llv~s~d--------------~~V~vwdl~~g--------- 176 (702)
++..+. .. . ..++ +....+++.+.. .|+++..+ +.|++++....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 665532 11 1 1234 123478887765 67776432 46888876531
Q ss_pred ---eEEEEe-ecCCCCeEEEEEcC-CCCEEEEEEcCCeE------EEEECCCCc------------------ceeEEecc
Q 005325 177 ---RFLSSL-NTQSPALNVVSRSK-LHGLIACGGEDGAV------ECFDMRMRS------------------SAARINAV 227 (702)
Q Consensus 177 ---~~~~~l-~~h~~~V~~l~~sp-~~~llasgs~DG~V------~iWD~~t~~------------------~v~~l~~~ 227 (702)
.....+ .+| .....++|+| .+.++++-.....+ +|.-+..+. ++..+.
T Consensus 189 ~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-- 265 (352)
T 2ism_A 189 RRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-- 265 (352)
T ss_dssp CTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--
T ss_pred CCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC--
Confidence 000111 122 2366789999 56666654433331 222222221 111111
Q ss_pred cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCe-------EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 228 APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSY-------PIRVKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 228 ~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~-------~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
+......++|. + |.++++....+.|...++.... ...+... ...+..|++.| ++.++++.
T Consensus 266 -----~~~ap~G~~~~-~-G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--~~rp~~v~~~p----dG~lyv~~ 332 (352)
T 2ism_A 266 -----QGFPPGNLAFF-R-GDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--FGRLREVQVGP----DGALYVTT 332 (352)
T ss_dssp -----TCCCEEEEEEE-T-TEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--SCCEEEEEECT----TSCEEEEE
T ss_pred -----CCCCCcceEEE-C-CEEEEEECCCCEEEEEEECCCCcceeecchheeccc--CCCeeEEEECC----CCcEEEEE
Confidence 12456778883 4 6666666667788888776432 1112222 35688999987 55555554
No 319
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.32 E-value=2.1 Score=48.67 Aligned_cols=152 Identities=11% Similarity=-0.029 Sum_probs=93.7
Q ss_pred ceeEEEECCCCCEEEEEEecCCcEEEEEcCCceE--EEeeecCCceEEEEEEcCCCCEEEEEEC--CCeEEEEecCCceE
Q 005325 64 ATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL--KFERHLDSEIINFEVLADDYSKLAFLCA--DRSISLHAKYGKHY 139 (702)
Q Consensus 64 ~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~--~~~~h~~~~vv~~~~ls~dg~~Las~s~--D~~I~iw~~~g~~~ 139 (702)
....|++.+.+..|+++-...+.|.+.++..... ........ -..+++.|....|..... ...|...++.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~--P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS--PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCC--cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence 4567889888887678877788999999876322 22222222 344556665556655553 45677777776544
Q ss_pred EEecCC--CccceEEecCCCcEEEEecC-CCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 005325 140 SLRIPR--MGRDMAYNSWSCDLLCAASS-PELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 140 ~~~i~~--~~~~l~~~~~s~~llv~s~d-~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~ 216 (702)
...+.. ....+++.+....|+++... +.|.++|+..... ..+.........|++.. +.++++-...+.|...|..
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 433332 23378888888888888764 4688888865433 23333334456777664 4555555556777777765
Q ss_pred CCc
Q 005325 217 MRS 219 (702)
Q Consensus 217 t~~ 219 (702)
+++
T Consensus 237 tg~ 239 (628)
T 4a0p_A 237 SGQ 239 (628)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.62 Score=48.69 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=85.5
Q ss_pred cEEEE--ecCCCEEEEECCCCeEEEEeec----CCCCeEEE---EE-----cCCCCEEEEEEcCCeEEEEECCCCcceeE
Q 005325 158 DLLCA--ASSPELYRINLEQGRFLSSLNT----QSPALNVV---SR-----SKLHGLIACGGEDGAVECFDMRMRSSAAR 223 (702)
Q Consensus 158 ~llv~--s~d~~V~vwdl~~g~~~~~l~~----h~~~V~~l---~~-----sp~~~llasgs~DG~V~iWD~~t~~~v~~ 223 (702)
.++++ ..+|.|+.++..+|.....+.. ..+++..- .+ ...+..+++|+.+|.+...|+++|+.+..
T Consensus 57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 45555 5799999999999866555433 22222210 00 01456889999999999999999999999
Q ss_pred EecccCCCCCC-CCeEEEEEc---C-CCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeecc--------
Q 005325 224 INAVAPAGDAD-QEVTALEFD---S-NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSI-------- 290 (702)
Q Consensus 224 l~~~~~~~~~~-~~Vtslafs---p-d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~-------- 290 (702)
+.......... ....|.... . ..+..|+.|..+..|.+.+ ++++ ++... --.|.+..
T Consensus 137 ~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~--------~s~~~~~~~~~~~~~~ 206 (339)
T 2be1_A 137 FGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVT--------YSTWQQNVLDVPLALQ 206 (339)
T ss_dssp ESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCE--------EEEEECCTTTHHHHTT
T ss_pred EecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEe--------cccccccccccccccc
Confidence 87652100000 001111110 0 1135677777777777776 4443 22100 00111110
Q ss_pred ---CCCCCeEEEeCCCEEEEEeCCCCceeE
Q 005325 291 ---NTERPKLITTDNHIVRIWDPETGESMT 317 (702)
Q Consensus 291 ---~~~~~ll~ss~Dg~V~IWd~~tg~~l~ 317 (702)
..++.+++++.|+.|..+|..+|..+.
T Consensus 207 ~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 207 NTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred cccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 013455777889999999999988876
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.91 E-value=0.26 Score=60.34 Aligned_cols=252 Identities=12% Similarity=0.180 Sum_probs=144.0
Q ss_pred CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC--ceEEEecCCCccceEEecCCCc-EEE
Q 005325 85 PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG--KHYSLRIPRMGRDMAYNSWSCD-LLC 161 (702)
Q Consensus 85 g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g--~~~~~~i~~~~~~l~~~~~s~~-llv 161 (702)
.+|.|.|+.+......+...+ ..++.+|.. .+++.-..+++.|+++.. ......+ ..++.|..|-.. .+.
T Consensus 48 ~~vvIidl~~~~~~~rrpi~A---dsAIMnP~~-~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~l~ 120 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISA---DSAIMNPAS-KVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVA 120 (1630)
T ss_pred ceEEEEECCCCCCcccccccc---hhhccCCCc-ceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCCeeE
Confidence 478888988744333332222 344566664 455566689999999863 2222222 335777776554 444
Q ss_pred EecCCCEEEEECCC-CeEEEEeecC----CCCeEEEEEcCCCCEEEEEE-------cCCeEEEEECCCCcceeEEecccC
Q 005325 162 AASSPELYRINLEQ-GRFLSSLNTQ----SPALNVVSRSKLHGLIACGG-------EDGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 162 ~s~d~~V~vwdl~~-g~~~~~l~~h----~~~V~~l~~sp~~~llasgs-------~DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
--++..||.|++.. ..++..|.-| ...|..-..+++..+++..+ -.|.+.+|....+. -+.+.+|..
T Consensus 121 lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~ 199 (1630)
T 1xi4_A 121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA 199 (1630)
T ss_pred EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh
Confidence 45567899999964 2344444444 33566667788887766544 24788888877432 233333310
Q ss_pred C--------CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC---eE-E-----E--E-eeccCCCCeEEEEEeec
Q 005325 230 A--------GDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS---YP-I-----R--V-KDHMFDSPIVDIKWHQS 289 (702)
Q Consensus 230 ~--------~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~---~~-l-----~--~-~~h~~~~~I~sl~fsp~ 289 (702)
. ..+...+.|.+.... ..+.++|.++... .+ . . + .......| .++..++
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~---------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~- 268 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQ---------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISE- 268 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecC---------CCceEEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEecc-
Confidence 0 011122222222211 1268888888542 11 1 1 1 11123344 3566665
Q ss_pred cCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 290 INTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 290 ~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
..+-+.+-+.-|.|.++|+.||.++..-.-...+|-..|.+..++=++..+..|+|....+.....
T Consensus 269 --k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 269 --KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred --ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 345566677889999999999998876555455665555555444466667888887776655443
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.88 E-value=0.4 Score=48.93 Aligned_cols=136 Identities=13% Similarity=-0.008 Sum_probs=71.6
Q ss_pred CCEEEEECCCCeEEEEeecCC--CCeEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCcceeEEecccCCCCCCCCeE
Q 005325 166 PELYRINLEQGRFLSSLNTQS--PALNVVSRSKLHGLIACGGED-----GAVECFDMRMRSSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~--~~V~~l~~sp~~~llasgs~D-----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vt 238 (702)
+.+++||+.+.+....-.... ....++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+ .....-.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~ 163 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML----TRRIGVG 163 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS----SCCBSCE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC----ccccceE
Confidence 468999998886543211111 11222223 56777777643 46889999876422111111 1122223
Q ss_pred EEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeC-----CCEEEEE
Q 005325 239 ALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTD-----NHIVRIW 308 (702)
Q Consensus 239 slafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~-----Dg~V~IW 308 (702)
++.+ + +.+++.|+.+ ..+.+||+.+.+...+........-.+++.. ++.-+++++. -..|.+|
T Consensus 164 ~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 164 VAVL--N-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL----HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEEE--T-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEEE--C-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE----CCEEEEEeCCCCCCccceEEEE
Confidence 3333 3 6777777654 4689999988775543222111111233333 2333444443 2568999
Q ss_pred eCCCCc
Q 005325 309 DPETGE 314 (702)
Q Consensus 309 d~~tg~ 314 (702)
|+.+.+
T Consensus 237 d~~~~~ 242 (308)
T 1zgk_A 237 DVETET 242 (308)
T ss_dssp ETTTTE
T ss_pred eCCCCc
Confidence 998753
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.87 E-value=0.96 Score=48.52 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=86.0
Q ss_pred EcCCCCEEEEEECCCeEEEEecC--CceEEEecCC---C--ccceEEecCCCcEEEEecCCCEEEEECCCCe--------
Q 005325 113 LADDYSKLAFLCADRSISLHAKY--GKHYSLRIPR---M--GRDMAYNSWSCDLLCAASSPELYRINLEQGR-------- 177 (702)
Q Consensus 113 ls~dg~~Las~s~D~~I~iw~~~--g~~~~~~i~~---~--~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~-------- 177 (702)
...+++.++++. ++.|+.-++. ..+..+..+. + ...+.. ..++.+++.....+|.+..+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvl-SpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVIS-STSGDLLCLFNDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEE-CTTSSEEEEECSSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEE-CCCCCEEEEecCCeEEEEEecCccccCccccc
Confidence 334445554443 3555554444 2333445552 2 223333 344445555556677777665221
Q ss_pred ----EEEEeec------CCCCeEEEEEcCCC---CEEEEEEcCCeEEEEECCCCc--ceeEEecccC---CCCCCCCeEE
Q 005325 178 ----FLSSLNT------QSPALNVVSRSKLH---GLIACGGEDGAVECFDMRMRS--SAARINAVAP---AGDADQEVTA 239 (702)
Q Consensus 178 ----~~~~l~~------h~~~V~~l~~sp~~---~llasgs~DG~V~iWD~~t~~--~v~~l~~~~~---~~~~~~~Vts 239 (702)
..+++.. ....|..+.|+|-+ ..|++-..|++|++||+.... +. .+..... .......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1223332 24679999999976 689999999999999998522 22 3332210 1122368999
Q ss_pred EEEcCCCCCEEEEEe--CCCeEEEE
Q 005325 240 LEFDSNGGFLMGVGS--STGKVLIY 262 (702)
Q Consensus 240 lafspd~g~~LasGs--~DG~V~lw 262 (702)
++|.++ +..|.+.+ ..|.|+-.
T Consensus 185 ~~Fg~~-~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKD-GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTT-SSCEEEEECTTSCEEEEE
T ss_pred EEEcCC-CcEEEEEecCCCCCEEEE
Confidence 999998 88888866 77877654
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.81 E-value=3.9 Score=47.29 Aligned_cols=258 Identities=12% Similarity=0.036 Sum_probs=139.8
Q ss_pred CceeEEEECCCCCEEEEEEecCCcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC-ceEEE
Q 005325 63 TATTKIRETPDGEFLIVSGIYPPQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG-KHYSL 141 (702)
Q Consensus 63 ~~v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g-~~~~~ 141 (702)
..|.+|....+|.. -.|+.+| +.+||..+.............+..+... + ..|..++.+ -|..++... ....+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~-g~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-G-DTLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-T-TEEEEEETT-EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-C-CcEEEEcCC-cceeEeCCCCeEEEe
Confidence 45788887777754 4555554 7889987643321110011113333332 4 455556665 566677653 33222
Q ss_pred ec---CCCccceE--EecCCCcEEEEecCCCEEEEECCCCeEEEEe-ecC----CCCeEEEEEcCCCCEEEEEEcCCeEE
Q 005325 142 RI---PRMGRDMA--YNSWSCDLLCAASSPELYRINLEQGRFLSSL-NTQ----SPALNVVSRSKLHGLIACGGEDGAVE 211 (702)
Q Consensus 142 ~i---~~~~~~l~--~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l-~~h----~~~V~~l~~sp~~~llasgs~DG~V~ 211 (702)
.. ......+. +......+++++. +.|++++..++++.... ... ...|.++...+++..|..|+. +-|.
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 11 00111121 2223456777765 56999999887764321 111 124888888877776666665 4688
Q ss_pred EEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec------cCCCCeEEEE
Q 005325 212 CFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH------MFDSPIVDIK 285 (702)
Q Consensus 212 iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h------~~~~~I~sl~ 285 (702)
.+|..+++........ ...|.+|...++ |. |.+|+.. -|.+|+..+.....+... .....|.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~------~~~i~~i~~d~~-g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 215 QYFPSTGQIKQTEAFH------NNSIKSLALDGN-GD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp EEETTTTEEEEEEEEE------EEEEEEEEECTT-CC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred EEcCCCCeEEeccCCC------CCeEEEEEEcCC-CC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence 8998876532221112 246889988877 54 4555654 578888877654333211 1123588887
Q ss_pred EeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec-------CCCCceeEEEEEcCCCEEEEEeCCC
Q 005325 286 WHQSINTERPKLITTDNHIVRIWDPETGESMTSIE-------PTAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 286 fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~-------~h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
... .+.+-+++..| |.++.... .+..+. .....|.+++...++. |.+|+.+|
T Consensus 286 ~D~----~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G 344 (758)
T 3ott_A 286 ADQ----EHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG 344 (758)
T ss_dssp ECT----TCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE
T ss_pred EcC----CCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc
Confidence 763 56677777666 54443322 122111 1134677776655554 66666553
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.75 E-value=0.75 Score=47.03 Aligned_cols=185 Identities=8% Similarity=0.030 Sum_probs=89.9
Q ss_pred EEEEEEecCCcEEEEEcCCceEEEeeec-CCceEEEEEEcCCCCEEEEEEC----CC-------eEEEEecCCceE-EEe
Q 005325 76 FLIVSGIYPPQVKVYELRQLSLKFERHL-DSEIINFEVLADDYSKLAFLCA----DR-------SISLHAKYGKHY-SLR 142 (702)
Q Consensus 76 ~llatGs~dg~I~vwdl~~~~~~~~~h~-~~~vv~~~~ls~dg~~Las~s~----D~-------~I~iw~~~g~~~-~~~ 142 (702)
.|++.|+. .+.+||..+......... ...-........++..+++++. ++ .+.+++...... .+.
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 34566653 378888887443221110 0111223334456677778773 11 156667663322 221
Q ss_pred -cCC--CccceEEecCCCcE-EEEecC-------CCEEEEECCCCeEEEEeecCCCCe-EEEEEcCCCCEEEEEEc----
Q 005325 143 -IPR--MGRDMAYNSWSCDL-LCAASS-------PELYRINLEQGRFLSSLNTQSPAL-NVVSRSKLHGLIACGGE---- 206 (702)
Q Consensus 143 -i~~--~~~~l~~~~~s~~l-lv~s~d-------~~V~vwdl~~g~~~~~l~~h~~~V-~~l~~sp~~~llasgs~---- 206 (702)
+|. ....++.. ...+ ++++.+ +.+++||+.+.+....-....... .+++. .++.+++.|+.
T Consensus 95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 121 11122222 3444 444433 248889999886543211111111 11222 35677777764
Q ss_pred --CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCCeEEEE
Q 005325 207 --DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST-----GKVLIYDLRSSYPIRV 272 (702)
Q Consensus 207 --DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D-----G~V~lwDlrs~~~l~~ 272 (702)
-..|.+||+.+.+-...-..+ .......++.+ + +..++.|+.+ ..|.+||+.+.+...+
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMK----TPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CccceEEEEcCCCCEEEECCCCC----CCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 245899999876532221111 01122233333 3 6677777643 3578899988765543
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.13 Score=53.91 Aligned_cols=200 Identities=12% Similarity=0.099 Sum_probs=105.3
Q ss_pred EEEEecCCcEEEEEcCCceEEEeeecC--CceEEEEE-EcCCCCEEEEE--ECCCeEEEEecCCceEE--EecCCCcc--
Q 005325 78 IVSGIYPPQVKVYELRQLSLKFERHLD--SEIINFEV-LADDYSKLAFL--CADRSISLHAKYGKHYS--LRIPRMGR-- 148 (702)
Q Consensus 78 latGs~dg~I~vwdl~~~~~~~~~h~~--~~vv~~~~-ls~dg~~Las~--s~D~~I~iw~~~g~~~~--~~i~~~~~-- 148 (702)
++.++.||.|.-+|..+....+..... .+++.... ..+.+..++.+ ..||.|..++...-... +.++....
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S 92 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS 92 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence 678889999999998887666655443 22232110 00111233333 46888887776532222 22221111
Q ss_pred ceEEe-----------cCCCcEEEEecCCCEEEEECCCCeEEEEeecCCC--C-----eEEEEEc-----CCCCEEEEEE
Q 005325 149 DMAYN-----------SWSCDLLCAASSPELYRINLEQGRFLSSLNTQSP--A-----LNVVSRS-----KLHGLIACGG 205 (702)
Q Consensus 149 ~l~~~-----------~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~--~-----V~~l~~s-----p~~~llasgs 205 (702)
.+... .....+++++.++.++.+|+.+|+.+..+..... . ..|.... -.+..|+.|.
T Consensus 93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~ 172 (339)
T 2be1_A 93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGK 172 (339)
T ss_dssp SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEE
T ss_pred ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEec
Confidence 12210 1334478999999999999999999998865421 0 1122211 1235778888
Q ss_pred cCCeEEEEECCCCcceeEEecccC-CCCCCCCe-EEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeE
Q 005325 206 EDGAVECFDMRMRSSAARINAVAP-AGDADQEV-TALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIV 282 (702)
Q Consensus 206 ~DG~V~iWD~~t~~~v~~l~~~~~-~~~~~~~V-tslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~ 282 (702)
.+..|.+.+ +++. +..+....- .......+ .+-.++.+ +.+ ++++.||.|.-+|..++..++.. +....||.
T Consensus 173 ~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D-g~~-~~~~~dg~v~A~d~~~G~~~W~~-~~l~sPv~ 246 (339)
T 2be1_A 173 TIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKD-GMC-IAPFRDKSLLASDLDFRIARWVS-PTFPGIIV 246 (339)
T ss_dssp EEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSS-SCC-EEEETTTEEEEECSTTCCEEEEC-CCCSSCEE
T ss_pred ceEEEEEEC-CCCC-eEEEecccccccccccccccccccccC-CcE-EEECCCCEEEEEECCCCcEEEEe-ecCCCCeE
Confidence 888888877 4453 322211100 00000000 00001224 455 55799999999999998887622 22245654
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.58 E-value=1.5 Score=44.63 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=92.4
Q ss_pred ECCCCCEEEEEEec----CC-------cEEEEEcCCceEEEeeecCCc--eEEEEEEcCCCCEEEEEECC-------CeE
Q 005325 70 ETPDGEFLIVSGIY----PP-------QVKVYELRQLSLKFERHLDSE--IINFEVLADDYSKLAFLCAD-------RSI 129 (702)
Q Consensus 70 ~SpDG~~llatGs~----dg-------~I~vwdl~~~~~~~~~h~~~~--vv~~~~ls~dg~~Las~s~D-------~~I 129 (702)
...++.. ++.|+. ++ .+.+||..+............ -..++.+ ++..+++++.+ ..+
T Consensus 53 ~~~~~~l-yv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQV-YVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCE-EEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEE-EEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 3445555 666763 11 177888776433221111111 1122323 44666777653 246
Q ss_pred EEEecCCce-EEEe-cCCCccceEEecCCCcEEEEec-------CCCEEEEECCCCeEEEEeecCC--CCeEEEEEcCCC
Q 005325 130 SLHAKYGKH-YSLR-IPRMGRDMAYNSWSCDLLCAAS-------SPELYRINLEQGRFLSSLNTQS--PALNVVSRSKLH 198 (702)
Q Consensus 130 ~iw~~~g~~-~~~~-i~~~~~~l~~~~~s~~llv~s~-------d~~V~vwdl~~g~~~~~l~~h~--~~V~~l~~sp~~ 198 (702)
.+++..... ..+. +|..............|++.+. .+.+++||+.+.+....-.... ....++.+ ++
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 207 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KG 207 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CC
Confidence 667776433 2221 2221111112223445554432 2459999999886543211111 11222222 56
Q ss_pred CEEEEEEcC-----CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeE
Q 005325 199 GLIACGGED-----GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST--------------GKV 259 (702)
Q Consensus 199 ~llasgs~D-----G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D--------------G~V 259 (702)
.+++.|+.+ ..|.+||+.+.+-...-..+ .......++.+ + +.+++.|+.+ ..|
T Consensus 208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP----QERSSISLVSL--A-GSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS----SCCBSCEEEEE--T-TEEEEECCBCCBC----CCBCCBCCCE
T ss_pred EEEEEcCcCCCCccceEEEEECCCCeEEECCCCC----CcccceEEEEE--C-CEEEEECCeeccCCCCceeccceeeeE
Confidence 788888753 35789999876522211111 01122233333 3 5677777654 458
Q ss_pred EEEEcCCCeEEEE
Q 005325 260 LIYDLRSSYPIRV 272 (702)
Q Consensus 260 ~lwDlrs~~~l~~ 272 (702)
.+||+.+.+...+
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 8899888765443
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.46 E-value=3 Score=43.61 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=118.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCceEEE-ecC------CCccceEEecC---CCcEEEEecC--------CCEE
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKYGKHYSL-RIP------RMGRDMAYNSW---SCDLLCAASS--------PELY 169 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~g~~~~~-~i~------~~~~~l~~~~~---s~~llv~s~d--------~~V~ 169 (702)
..+. +.+++. |+++..++.|.+++..|. ..+ .++ .....|++++. +..|+++... +.|.
T Consensus 32 ~~ia-~~pdG~-l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 32 WSIA-PLGGGR-YLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEE-EEETTE-EEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred eEEE-EcCCCe-EEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3444 456765 555566788888876565 222 222 11237788876 6678777653 5788
Q ss_pred EEECCCC--e-----E-EEEeec-CCCCeEEEEEcCCCCEEEEEEc-------------CCeEEEEECCCCc-------c
Q 005325 170 RINLEQG--R-----F-LSSLNT-QSPALNVVSRSKLHGLIACGGE-------------DGAVECFDMRMRS-------S 220 (702)
Q Consensus 170 vwdl~~g--~-----~-~~~l~~-h~~~V~~l~~sp~~~llasgs~-------------DG~V~iWD~~t~~-------~ 220 (702)
+|++... . . +..+.. .......|+|.|++.++++-+. .|.|.-+++...- .
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 8887654 1 1 111221 1123567999999988777443 2456655554210 0
Q ss_pred eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCC----------------CeEEEEeeccCCCCe
Q 005325 221 AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTG---KVLIYDLRS----------------SYPIRVKDHMFDSPI 281 (702)
Q Consensus 221 v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG---~V~lwDlrs----------------~~~l~~~~h~~~~~I 281 (702)
...+... -.....|+|+|+.|.++++-.... .|.+..--. ..|+....+. ....
T Consensus 189 ~~i~a~G------~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~~ap 261 (354)
T 3a9g_A 189 SPIWSYG------HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE-TWAP 261 (354)
T ss_dssp CCEEEEC------CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCCE
T ss_pred CcEEEEc------cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC-CcCC
Confidence 1111111 134568999994266555433222 233322110 0122222111 2456
Q ss_pred EEEEEeecc---CCCCCeEEEe-CCCEEEEEeCCC-Ccee--EEec-CCCCceeEEEEEcCCCEEEEEe
Q 005325 282 VDIKWHQSI---NTERPKLITT-DNHIVRIWDPET-GESM--TSIE-PTAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 282 ~sl~fsp~~---~~~~~ll~ss-~Dg~V~IWd~~t-g~~l--~~i~-~h~~~I~~v~~~p~~~~l~~a~ 342 (702)
..++|.... .-.+.++++. ..+.|...++.. +... ..+. .....+.+|++.|++.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 788884210 0134566555 567788888774 3332 2232 2235788999999987655553
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.42 E-value=1.2 Score=46.89 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=98.0
Q ss_pred CCCeEEEEecC---CceEEEecCC--------CccceEEecC--C-CcEEEEecC---CC--EEEEECCCCeE--EEEee
Q 005325 125 ADRSISLHAKY---GKHYSLRIPR--------MGRDMAYNSW--S-CDLLCAASS---PE--LYRINLEQGRF--LSSLN 183 (702)
Q Consensus 125 ~D~~I~iw~~~---g~~~~~~i~~--------~~~~l~~~~~--s-~~llv~s~d---~~--V~vwdl~~g~~--~~~l~ 183 (702)
.+|.|.+++.. +....+.+.. ....+.+... . ..|+++... .. |+.++...+.. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 57888888876 2333333322 1114444442 2 236777554 23 55556554432 33343
Q ss_pred cC-CCCeEEEEEcCCCCEEEEEE-----------------cCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC
Q 005325 184 TQ-SPALNVVSRSKLHGLIACGG-----------------EDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN 245 (702)
Q Consensus 184 ~h-~~~V~~l~~sp~~~llasgs-----------------~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd 245 (702)
+. -...|.+.+.+++.++++.. ..|.|..+|.. + +..+... -...+.|+|+||
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~------l~~pNGia~spD 231 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEG------FDFANGINISPD 231 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEE------ESSEEEEEECTT
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecC------CcccCcceECCC
Confidence 32 23689999999998777754 12567777763 2 2222222 256789999999
Q ss_pred CCCEEEEE-eCCCeEEEEEcCC-CeEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEe-CC-CEEEEEeCC--CCceeE
Q 005325 246 GGFLMGVG-SSTGKVLIYDLRS-SYPIR--VKDHMFDSPIVDIKWHQSINTERPKLITT-DN-HIVRIWDPE--TGESMT 317 (702)
Q Consensus 246 ~g~~LasG-s~DG~V~lwDlrs-~~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~D-g~V~IWd~~--tg~~l~ 317 (702)
+..|.++ +..+.|..||+.. +.... .... ....-.+++.+ .++.+.+++ .+ +.|..|+.. .+..+.
T Consensus 232 -g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~---e~G~lwva~~~~g~~v~~~~P~~~~~s~v~ 305 (355)
T 3sre_A 232 -GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDP---VTGDLWVGCHPNGMRIFFYDAENPPGSEVL 305 (355)
T ss_dssp -SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECT---TTCCEEEEEESCHHHHHSCCTTSCCCEEEE
T ss_pred -CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeC---CCCcEEEEecCCceEEEEECCCCCCCCEEE
Confidence 8776655 4578999999974 33221 2222 34456777763 224555543 22 334444544 244444
Q ss_pred Eec
Q 005325 318 SIE 320 (702)
Q Consensus 318 ~i~ 320 (702)
.|.
T Consensus 306 rI~ 308 (355)
T 3sre_A 306 RIQ 308 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.28 E-value=2.1 Score=44.40 Aligned_cols=145 Identities=10% Similarity=-0.130 Sum_probs=64.6
Q ss_pred CCEEEEECCCCeEEEEeecCCC-Ce-EEEEEcCCCCEEEEEEc------CCeEEEEEC--CCCcceeEEecccCCCCCCC
Q 005325 166 PELYRINLEQGRFLSSLNTQSP-AL-NVVSRSKLHGLIACGGE------DGAVECFDM--RMRSSAARINAVAPAGDADQ 235 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h~~-~V-~~l~~sp~~~llasgs~------DG~V~iWD~--~t~~~v~~l~~~~~~~~~~~ 235 (702)
+.+.+||+.+.+....-..... .. .+++.. ++.+++.|+. ...|.+||+ .+.+- +............
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W--~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKW--NKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEE--EECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcE--EecCCCCCCcccc
Confidence 5799999998765432211111 11 223332 4567777764 345777877 33321 1111100000011
Q ss_pred CeEEEEEcCCCCCEEEEEeCC----------------------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCC
Q 005325 236 EVTALEFDSNGGFLMGVGSST----------------------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTE 293 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~D----------------------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~ 293 (702)
...++.+ + +.+++.|+.+ ..+.+||+.+.+...+........-.+++.. ++
T Consensus 245 ~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~ 317 (357)
T 2uvk_A 245 GGFAGIS--N-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW----NN 317 (357)
T ss_dssp SCEEEEE--T-TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE----TT
T ss_pred cceEEEE--C-CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe----CC
Confidence 1223333 3 5677777632 2578999987664443222111111122222 24
Q ss_pred CCeEEEeC--C----CEEEEEeCCCCceeEEec
Q 005325 294 RPKLITTD--N----HIVRIWDPETGESMTSIE 320 (702)
Q Consensus 294 ~~ll~ss~--D----g~V~IWd~~tg~~l~~i~ 320 (702)
.-+|+++. + ..|.++++++++.+...+
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 44555663 2 245666888777665443
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.17 E-value=0.83 Score=44.60 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc------eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS------AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLI 261 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~------v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~l 261 (702)
.+.+++|+|++.+.++ .+|.+.-.++.+... -..+-.. . -..-.++.|.|+ |.+.++ .||.|.-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~----G-w~~F~a~~fD~~-G~LYav--~dG~iyr 111 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG----G-WNQFQFLFFDPN-GYLYAV--SKDKLYK 111 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS----C-GGGCSEEEECTT-SCEEEE--ETTEEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc----c-cccceEEEECCC-CCEEEe--CCCEEEE
Confidence 6779999998887777 678877777655221 1222111 0 112578999999 888777 6698887
Q ss_pred EEcCCCe-E------EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCc------eeEE-ecCCCCcee
Q 005325 262 YDLRSSY-P------IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGE------SMTS-IEPTAGKIN 327 (702)
Q Consensus 262 wDlrs~~-~------l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~------~l~~-i~~h~~~I~ 327 (702)
++--+.. - ..+-.+. -..+..|.|.| ++.|.+.. |+.+.-+...++. .... ....-....
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p----~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGG-WSGFKFLFFHP----NGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSS-GGGEEEEEECT----TSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred eCCCcCCCCceeccccEeccCC-CCceEEEEECC----CceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 7753211 0 1111111 24678999998 77777777 7776444333221 1111 112223444
Q ss_pred EEEEEcCCCEEEEEeCCCcEEEEEcCCCCCCCCc
Q 005325 328 DVCVFKDSGLLLLALDCSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 328 ~v~~~p~~~~l~~a~~d~~I~~~~ip~lg~ap~W 361 (702)
.+.|.|++.+.++. ++++..-. |.-.+.|.|
T Consensus 186 ~l~f~~~G~l~~v~--~g~~Y~~~-~p~~~~~~~ 216 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKFYEDY-PPSYAYDNW 216 (236)
T ss_dssp EEEECTTSCEEEEE--TTEEEEES-CCCSTTCCH
T ss_pred EEEECCCCcEEEEe--CCeEEecC-CccccCcch
Confidence 56677777765555 66544432 223445555
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.39 E-value=5.8 Score=41.54 Aligned_cols=177 Identities=11% Similarity=0.026 Sum_probs=97.1
Q ss_pred cCCCEEEEECCC--CeEEE-Eeec-----CCCCeEEEEEcC--CC--CEEEEEEc--CCeEEEEECCCCcceeEEecccC
Q 005325 164 SSPELYRINLEQ--GRFLS-SLNT-----QSPALNVVSRSK--LH--GLIACGGE--DGAVECFDMRMRSSAARINAVAP 229 (702)
Q Consensus 164 ~d~~V~vwdl~~--g~~~~-~l~~-----h~~~V~~l~~sp--~~--~llasgs~--DG~V~iWD~~t~~~v~~l~~~~~ 229 (702)
..|.|+++|+.+ ++... .+.+ ..-....|.+.+ ++ .++++-.. +.+|.+|++........+-....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 578899999873 33211 2222 122456677655 34 35555444 57888988765432222211100
Q ss_pred CCCCCCCeEEEEEcCCCCCEEEEEe-----------------CCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCC
Q 005325 230 AGDADQEVTALEFDSNGGFLMGVGS-----------------STGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINT 292 (702)
Q Consensus 230 ~~~~~~~Vtslafspd~g~~LasGs-----------------~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~ 292 (702)
...-...+.+++.++ |.+.++.. ..|.|.-||.. +...+... -..-+.|+|+| +
T Consensus 161 -g~~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~--l~~pNGia~sp---D 231 (355)
T 3sre_A 161 -HKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG--FDFANGINISP---D 231 (355)
T ss_dssp -CTTCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE--ESSEEEEEECT---T
T ss_pred -cCCCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC--CcccCcceECC---C
Confidence 011356889999999 87766654 13556666653 32222222 12458999998 3
Q ss_pred CCCeEEEe-CCCEEEEEeCCC-Cce--eEEecCCCCceeEEEEEc-CCCEEEEEeCC-CcEEEE
Q 005325 293 ERPKLITT-DNHIVRIWDPET-GES--MTSIEPTAGKINDVCVFK-DSGLLLLALDC-SQIPSY 350 (702)
Q Consensus 293 ~~~ll~ss-~Dg~V~IWd~~t-g~~--l~~i~~h~~~I~~v~~~p-~~~~l~~a~~d-~~I~~~ 350 (702)
+..++++. ..+.|..|++.. |.+ ...+.. .+..-.+++.+ ++.+.+++.-+ .+|..|
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 33444443 578999999863 432 123322 45566788888 47766656533 444444
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.38 E-value=1.3 Score=46.00 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=51.7
Q ss_pred CCEEEEECCCCeEEEEeecC-CCCeEEEEEcCCCCEEEEEEcC-------------------------------------
Q 005325 166 PELYRINLEQGRFLSSLNTQ-SPALNVVSRSKLHGLIACGGED------------------------------------- 207 (702)
Q Consensus 166 ~~V~vwdl~~g~~~~~l~~h-~~~V~~l~~sp~~~llasgs~D------------------------------------- 207 (702)
+.+++||+.+.+....-... .......++..++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF 165 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence 46999999988654322111 1111111122456788888864
Q ss_pred --CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEc--CCCeEE
Q 005325 208 --GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS------TGKVLIYDL--RSSYPI 270 (702)
Q Consensus 208 --G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~------DG~V~lwDl--rs~~~l 270 (702)
..|.+||+.+.+-...-..+. . ...-.+++.. + +.+++.|+. ...|.+||+ .+....
T Consensus 166 ~~~~v~~yd~~~~~W~~~~~~p~---~-~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 166 FNKFLLSFDPSTQQWSYAGESPW---Y-GTAGAAVVNK-G-DKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp CCCEEEEEETTTTEEEEEEECSS---C-CCBSCEEEEE-T-TEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred CcccEEEEeCCCCcEEECCCCCC---C-CcccccEEEE-C-CEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 579999998765332222210 0 1111233333 3 566666653 346788887 444443
No 334
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.36 E-value=3.5 Score=43.14 Aligned_cols=147 Identities=11% Similarity=0.033 Sum_probs=81.8
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-ceeEEecccCCCCCCCCeEEEEEcCC---CCCEEEEEeC---C--
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS-SAARINAVAPAGDADQEVTALEFDSN---GGFLMGVGSS---T-- 256 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~-~v~~l~~~~~~~~~~~~Vtslafspd---~g~~LasGs~---D-- 256 (702)
-.....|+|.|++.++++ ..+|.|.++|. ++. .+..+... .........|+|+|+ ++.++++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVA---NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCC---CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeecccee---ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 446789999999986555 55699999974 343 22222110 011356889999996 4555554442 3
Q ss_pred --CeEEEEEcCCC-------eEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEeCC--------------CEEEEEeCCC
Q 005325 257 --GKVLIYDLRSS-------YPIRV-KDHMFDSPIVDIKWHQSINTERPKLITTDN--------------HIVRIWDPET 312 (702)
Q Consensus 257 --G~V~lwDlrs~-------~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss~D--------------g~V~IWd~~t 312 (702)
..|..|++... +.+.. ...........|+|.| ++.|+++..+ +.|.-++..
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p----DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d- 177 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP----DGMLYITTGDAADPRLAQDLSSLAGKILRVDEE- 177 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT----TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC----CCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-
Confidence 67888887654 11211 1110011346799997 5566665422 345555543
Q ss_pred Cc----------eeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 313 GE----------SMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 313 g~----------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
|+ .+. ..+ -...+.|+|.|+.+.|+++...
T Consensus 178 G~~p~~npf~~~~i~-a~G-~rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 178 GRPPADNPFPNSPIW-SYG-HRNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp SCCCTTSSSTTCCEE-EEC-CSCCCEEEECTTTCCEEEEECC
T ss_pred CCCCCCCCCCCCcEE-EEc-cCCcceEEEeCCCCCEEEEecC
Confidence 22 111 122 2345689999955556666544
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.31 E-value=3.6 Score=43.02 Aligned_cols=115 Identities=4% Similarity=-0.026 Sum_probs=65.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCC---CCCEEEEE--eC
Q 005325 181 SLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSN---GGFLMGVG--SS 255 (702)
Q Consensus 181 ~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd---~g~~LasG--s~ 255 (702)
.+...-...+.|+|.|++.++++--..|.|.+++..++.....................|+|+|+ ++.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34444557889999999998877655899999987655432111111001112467899999994 24443332 24
Q ss_pred CCeEEEEEcCC----------CeEEEE-eeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 256 TGKVLIYDLRS----------SYPIRV-KDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 256 DG~V~lwDlrs----------~~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
++.|.-|.+.. .+.+.. ...........|.|.| ++.|.++
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp----DG~Lyvt 156 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP----DKMLYAG 156 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT----TSCEEEE
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC----CCCEEEE
Confidence 55666666554 122221 1111112346799997 5566665
No 336
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=94.07 E-value=0.0091 Score=52.65 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=8.8
Q ss_pred Ccceeeccccccc
Q 005325 585 PRLYEVKDERHAE 597 (702)
Q Consensus 585 ~~~~~~~~~~~~~ 597 (702)
+-..+++++..+.
T Consensus 14 ~V~V~Lk~g~~~~ 26 (119)
T 1b34_A 14 TVTIELKNGTQVH 26 (119)
T ss_dssp EEEEEETTCCEEE
T ss_pred EEEEEEcCCCEEE
Confidence 4566788887764
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.01 E-value=6.1 Score=40.32 Aligned_cols=179 Identities=6% Similarity=-0.057 Sum_probs=97.6
Q ss_pred EEEECCCCCEEEEEEecC-------------CcEEEEEcCCceEEEeeecCCceEEEEEEcCCCCEEEEEE--CCC--eE
Q 005325 67 KIRETPDGEFLIVSGIYP-------------PQVKVYELRQLSLKFERHLDSEIINFEVLADDYSKLAFLC--ADR--SI 129 (702)
Q Consensus 67 ~i~~SpDG~~llatGs~d-------------g~I~vwdl~~~~~~~~~h~~~~vv~~~~ls~dg~~Las~s--~D~--~I 129 (702)
+--++++|.+|..+...+ ..|+..++.......... .. ...+++++.+|+... .++ .|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~---~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DP---CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SC---EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CC---ccEEEEeCCEEEEEeecCCCCceE
Confidence 345688999977776654 356666666643222211 11 114556778888776 333 44
Q ss_pred EEEecCCceEEEecCCCccceEEecCCCcEEEEec-CCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC-
Q 005325 130 SLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAAS-SPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED- 207 (702)
Q Consensus 130 ~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~-d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D- 207 (702)
..-++.|.....-..... ..+.+.+..|+..+. ...|++.++..+.....+. +... ..+.|++.+|+-....
T Consensus 132 y~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGG
T ss_pred EEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCC
Confidence 444555543332222222 233444555665655 5679999998776543332 2222 3456888887776653
Q ss_pred -CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCCe
Q 005325 208 -GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS--STGKVLIYDLRSSY 268 (702)
Q Consensus 208 -G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs--~DG~V~lwDlrs~~ 268 (702)
..|..-++.... ...|.. ..+.+ |+|+ +..|.-++ ..+.|..-++....
T Consensus 206 ~~~I~~~~ldG~~-~~~Lt~--------~~~~~--~~~~-g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 206 DNAIVHVNINNPN-PVVLTE--------ANIEH--YNVY-GSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp TTEEEEECSSSCC-CEECSC--------SCEEE--EEEE-TTEEEEEECSSSCEEEEEETTSCC
T ss_pred CcEEEEEECCCCC-eEEEeC--------CCcce--EEEC-CCEEEEEECCCCcEEEEEECCCCc
Confidence 356666665433 333322 23433 6777 77766543 23566666665433
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.76 E-value=7.5 Score=40.47 Aligned_cols=222 Identities=11% Similarity=0.061 Sum_probs=114.8
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCCceE-EEee------ecCCceEEEEEEcCC---CCEEEEEE-C-------C
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQLSL-KFER------HLDSEIINFEVLADD---YSKLAFLC-A-------D 126 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~~~~-~~~~------h~~~~vv~~~~ls~d---g~~Las~s-~-------D 126 (702)
...|+|.|||++|+++ ...+.|.+++...... .+.. ..... ..-+.++|+ ...|..+. . .
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g-~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGG-LLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCS-EEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCC-ceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4789999999942444 5679999998543211 0110 00111 234567775 34443332 2 1
Q ss_pred CeEEEEecCCc---e--EE---EecC------CCccceEEecCCCcEEEEecC--------------CCEEEEECCCCe-
Q 005325 127 RSISLHAKYGK---H--YS---LRIP------RMGRDMAYNSWSCDLLCAASS--------------PELYRINLEQGR- 177 (702)
Q Consensus 127 ~~I~iw~~~g~---~--~~---~~i~------~~~~~l~~~~~s~~llv~s~d--------------~~V~vwdl~~g~- 177 (702)
..|..++..+. . .. ..+| +.+..+++.+.. .|+++..+ +.|++++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 24544544321 1 11 1223 123478888765 67766533 468888876320
Q ss_pred -----------EEEEeecCCCCeEEEEEcC-CCCEEEEEEc-CCeEEEEECCCCcc------------------------
Q 005325 178 -----------FLSSLNTQSPALNVVSRSK-LHGLIACGGE-DGAVECFDMRMRSS------------------------ 220 (702)
Q Consensus 178 -----------~~~~l~~h~~~V~~l~~sp-~~~llasgs~-DG~V~iWD~~t~~~------------------------ 220 (702)
....+.........++|+| .+.++++-.. ++.=+|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211123477899999 5555544221 11123322222111
Q ss_pred -------eeEEecccCCCCCCCCeEEEEEcC-------CCCCEEEEEeCCCeEEEEEcCCCeEEEEeec--cCCCCeEEE
Q 005325 221 -------AARINAVAPAGDADQEVTALEFDS-------NGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH--MFDSPIVDI 284 (702)
Q Consensus 221 -------v~~l~~~~~~~~~~~~Vtslafsp-------d~g~~LasGs~DG~V~lwDlrs~~~l~~~~h--~~~~~I~sl 284 (702)
+..+ .+...++.++|.. + |.++++....+.|...++..+.++..... .....+..|
T Consensus 257 ~~~~~~P~~~~-------~~~~ap~G~~~y~g~~fp~~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 257 VAGTEQPVFYW-------KDSPAVSGMAFYNSDKFPQWQ-QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp CTTSCCCSEEE-------SSCCCEEEEEEECCSSSGGGT-TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CCCccCCeEEe-------CCCcCcceeEEECCccCcccC-CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 1111 1124677888864 3 66777777788888888876654432111 113478899
Q ss_pred EEeeccCCCCCeEEEeC
Q 005325 285 KWHQSINTERPKLITTD 301 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~ 301 (702)
++.| ++.|+++++
T Consensus 329 ~~~p----dG~lyv~td 341 (353)
T 2g8s_A 329 RTGP----DGYLYVLTD 341 (353)
T ss_dssp EECT----TSCEEEEEC
T ss_pred EECC----CCcEEEEEe
Confidence 9987 556666554
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.76 E-value=3 Score=48.02 Aligned_cols=153 Identities=11% Similarity=0.076 Sum_probs=80.3
Q ss_pred CCCCEEEEEECC----CeEEEEecC-CceEEEe-------cCC--CccceEEecCCCcEEE-EecC------CCEEEEEC
Q 005325 115 DDYSKLAFLCAD----RSISLHAKY-GKHYSLR-------IPR--MGRDMAYNSWSCDLLC-AASS------PELYRINL 173 (702)
Q Consensus 115 ~dg~~Las~s~D----~~I~iw~~~-g~~~~~~-------i~~--~~~~l~~~~~s~~llv-~s~d------~~V~vwdl 173 (702)
.++..+++|+.+ ..+.+++.. +....+. .|. .+..++....+..+++ |+.+ +.+++||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 344666777643 356677766 3444443 121 2223443331444544 4432 45899999
Q ss_pred CCCeEEEEeecCCC-CeEEEEEcCCCCEEEEEEcCC--eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEE
Q 005325 174 EQGRFLSSLNTQSP-ALNVVSRSKLHGLIACGGEDG--AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLM 250 (702)
Q Consensus 174 ~~g~~~~~l~~h~~-~V~~l~~sp~~~llasgs~DG--~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~L 250 (702)
.+.+....-..... .-.+++...++.+++.|+.++ .|.+||+.+..-.. +..............++.+..+.+..+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 98765432111111 112233324778999988755 79999998765221 111000000122334455554424566
Q ss_pred EEEeC--C-----CeEEEEEcCCCe
Q 005325 251 GVGSS--T-----GKVLIYDLRSSY 268 (702)
Q Consensus 251 asGs~--D-----G~V~lwDlrs~~ 268 (702)
+.|+. + ..|.+||+.+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 67765 2 468999999877
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.64 E-value=6.4 Score=42.67 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCC--CCCCCCeEEEEEcCC---CCCEEEEEeC-----
Q 005325 186 SPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPA--GDADQEVTALEFDSN---GGFLMGVGSS----- 255 (702)
Q Consensus 186 ~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~--~~~~~~Vtslafspd---~g~~LasGs~----- 255 (702)
-...+.|+|.|++.++++-...+.|.+++..++............ ......+..|+|+|+ ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346789999999998877554457999987655432222221100 012467789999994 3655555442
Q ss_pred -------CCeEEEEEcCCC-------eEEEE-eeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 256 -------TGKVLIYDLRSS-------YPIRV-KDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 256 -------DG~V~lwDlrs~-------~~l~~-~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
...|.-|++... +.+.. ...........|+|.| ++.|.++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p----DG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP----DQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT----TSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC----CCeEEEEE
Confidence 235666665432 11211 1111123468999997 55666553
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.11 E-value=3.8 Score=42.73 Aligned_cols=149 Identities=7% Similarity=-0.098 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCCc--ceeEEecccCCCCCCCCeEEEEEcCC---CCCEEEEEeC-----
Q 005325 187 PALNVVSRSKLHG-LIACGGEDGAVECFDMRMRS--SAARINAVAPAGDADQEVTALEFDSN---GGFLMGVGSS----- 255 (702)
Q Consensus 187 ~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~~--~v~~l~~~~~~~~~~~~Vtslafspd---~g~~LasGs~----- 255 (702)
.....|+|.|++. ++++ ...|.|.+++..... .+..+... ..........|+|+|+ ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v--~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDV--WAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCC--CCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCccc--ccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3578999999998 6654 567999999864221 11111100 0011356789999994 3655555433
Q ss_pred --CCeEEEEEcCCC-----eEEEE-eecc----CCCCeEEEEEeeccCCCCCeEEEeCC--------------CEEEEEe
Q 005325 256 --TGKVLIYDLRSS-----YPIRV-KDHM----FDSPIVDIKWHQSINTERPKLITTDN--------------HIVRIWD 309 (702)
Q Consensus 256 --DG~V~lwDlrs~-----~~l~~-~~h~----~~~~I~sl~fsp~~~~~~~ll~ss~D--------------g~V~IWd 309 (702)
...|..|++... ....+ .... .......|+|.| ++.|.++..+ +.|.-++
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p----dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG----KGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS----SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC----CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235777776542 11111 1110 011236799998 5566665432 3555566
Q ss_pred CCCC-------------c-eeEEecCCCCceeEEEEEcCCCEEEEEeCC
Q 005325 310 PETG-------------E-SMTSIEPTAGKINDVCVFKDSGLLLLALDC 344 (702)
Q Consensus 310 ~~tg-------------~-~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d 344 (702)
.... . .+.. .+ ......++|.|..+.|+++...
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a-~G-~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWS-YG-IRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEE-EC-CSEEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCCCCCCcCCCCCCccEEE-Ec-CcCccceEEECCCCCEEEEecC
Confidence 5421 0 1111 22 2356789999966666666544
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.81 E-value=3.1 Score=51.22 Aligned_cols=217 Identities=11% Similarity=0.116 Sum_probs=127.1
Q ss_pred eEEEEecCCceEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEcC
Q 005325 128 SISLHAKYGKHYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 128 ~I~iw~~~g~~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~D 207 (702)
+|.|-|+......++-|-...+...+|.. .+++.-.+..+.++|+++...+.++.... .|.-=.|-... .|+..+.
T Consensus 49 ~vvIidl~~~~~~~rrpi~AdsAIMnP~~-~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT~- 124 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPIRRPISADSAIMNPAS-KVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVTD- 124 (1630)
T ss_pred eEEEEECCCCCCcccccccchhhccCCCc-ceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEcC-
Confidence 45555555433334444444444455544 55555567889999999998888776655 46666776443 4444443
Q ss_pred CeEEEEECCC-CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-------CCCeEEEEEcCCCeEEEEeeccCCC
Q 005325 208 GAVECFDMRM-RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-------STGKVLIYDLRSSYPIRVKDHMFDS 279 (702)
Q Consensus 208 G~V~iWD~~t-~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-------~DG~V~lwDlrs~~~l~~~~h~~~~ 279 (702)
..|.-|++.. ..++..+..|.... ...|..-..+++ ..+++..+ -.|.+.+|.........+.+|. .
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~--~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha--~ 199 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA--A 199 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcc--cCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeeecccccchhhhHhH--h
Confidence 6899999974 34555565553222 467888888888 77666432 3588999998876554455552 1
Q ss_pred CeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCC---c-eeE-----EecCC---CCceeEEEEEcCCCEEEEEeC
Q 005325 280 PIVDIKWHQSINTERPKLITT----DNHIVRIWDPETG---E-SMT-----SIEPT---AGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 280 ~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg---~-~l~-----~i~~h---~~~I~~v~~~p~~~~l~~a~~ 343 (702)
.-..+...- ......+++-+ ..+.++|-++... . .+. ...+. ..--..+..++..+++++.+.
T Consensus 200 ~F~~~~~~~-~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 200 SFAQFKMEG-NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhheeccCC-CCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 111111110 00111222221 1367888888542 1 111 11110 112235677888999999999
Q ss_pred CCcEEEEEcCC
Q 005325 344 CSQIPSYFIPD 354 (702)
Q Consensus 344 d~~I~~~~ip~ 354 (702)
-|-+++|.+-+
T Consensus 279 ~G~~~~~d~~t 289 (1630)
T 1xi4_A 279 YGYIHLYDLET 289 (1630)
T ss_pred CceEEEEeccc
Confidence 99999998765
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.75 E-value=1.3 Score=43.30 Aligned_cols=146 Identities=10% Similarity=0.053 Sum_probs=83.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCc------ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeE--
Q 005325 198 HGLIACGGEDGAVECFDMRMRS------SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYP-- 269 (702)
Q Consensus 198 ~~llasgs~DG~V~iWD~~t~~------~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~-- 269 (702)
..+|++...| +|+.=-+..+. ....+... .-..++.|+|+|+ |.+.++ .+|.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~-----gw~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~ 74 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKG-----GWSNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDN 74 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESS-----SCTTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCcc-----ccccceeEEECCC-ccEEEE--eCCeEEEECCCCCCccc
Confidence 3456666677 66655554433 23333331 0147789999998 987777 778766666544221
Q ss_pred -----EEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-C-cee----EEe-cCCCCceeEEEEEcCCCE
Q 005325 270 -----IRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-G-ESM----TSI-EPTAGKINDVCVFKDSGL 337 (702)
Q Consensus 270 -----l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g-~~l----~~i-~~h~~~I~~v~~~p~~~~ 337 (702)
..+-..... .-.++.|.| ++.|.++ .|+.|.-|+..+ + ..+ ..+ ..-=..+..|.+.|++.+
T Consensus 75 W~~s~t~IG~~Gw~-~F~a~~fD~----~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 75 WMGRAKKIGNGGWN-QFQFLFFDP----NGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp HHHHCEEEECSCGG-GCSEEEECT----TSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred ccccccEecccccc-cceEEEECC----CCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence 111111111 136788887 6677777 568888787643 1 111 111 111247788989998876
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCc
Q 005325 338 LLLALDCSQIPSYFIPDLGPTPKW 361 (702)
Q Consensus 338 l~~a~~d~~I~~~~ip~lg~ap~W 361 (702)
.++. ++.+.-. .|..++-..|
T Consensus 149 yav~--dg~lyr~-~~P~~~~~~w 169 (236)
T 1tl2_A 149 YAVH--GQQFYKA-LPPVSNQDNW 169 (236)
T ss_dssp EEEE--TTEEEEE-CCCSSTTCCH
T ss_pred EEEe--CCcEEec-CCCCCCCccc
Confidence 6555 7775543 3444555556
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.13 E-value=4 Score=41.20 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=108.0
Q ss_pred CEEEEEECCCeEEEEecC--CceE-EEecCCCccceEEecCCCcEEEEecCCCEEEEECCC-CeEEEEeecCCCCeEEEE
Q 005325 118 SKLAFLCADRSISLHAKY--GKHY-SLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ-GRFLSSLNTQSPALNVVS 193 (702)
Q Consensus 118 ~~Las~s~D~~I~iw~~~--g~~~-~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~~l~~h~~~V~~l~ 193 (702)
...+... |+.|..|-.. |..- ..........+++-. ...+++ . ++.||.|-... +++-.+... ...|..|+
T Consensus 34 ~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~-~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~-~~~v~~ia 108 (282)
T 3qhy_B 34 FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLAL-K-DGEVIAWGGNEDGQTTVPAEA-RSGVDAIA 108 (282)
T ss_dssp SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS-SEEEEE-E-TTEEEEEECCTTSTTCCCGGG-SSSEEEEE
T ss_pred CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC-CEEEEE-E-CCEEEEeeCCCCCCCCCCccc-CCCeEEEE
Confidence 4444456 8889888433 3211 000111111222221 112333 4 89999995432 222111111 23688888
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 005325 194 RSKLHGLIACGGEDGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK 273 (702)
Q Consensus 194 ~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~ 273 (702)
....+.++++ ||.|..|-....-.+..-... ...|..|+.... ..++. + ||.|..|-....-.+-+.
T Consensus 109 ~G~~hs~al~---~G~v~~wG~n~~gqlg~~~~~------~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 109 AGAWASYALK---DGKVIAWGDDSDGQTTVPAEA------QSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp EETTEEEEEE---TTEEEEEECCTTSTTSCCGGG------GSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTSCC
T ss_pred CcCCEEEEEe---CCeEEEecCCCCCcCCCCccC------CCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCCCc
Confidence 7766544443 899999977643322211111 356888877644 33333 4 799999976542211111
Q ss_pred eccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEc
Q 005325 274 DHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFI 352 (702)
Q Consensus 274 ~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~i 352 (702)
.. ....|..|+-- ..+.++- .++.|..|-... +++-...+. ...|..|+.-.... +++. ++.++.|=-
T Consensus 176 ~~-~~~~v~~i~~G-----~~hs~al-~~G~v~~wG~n~~gqlg~p~~~-~~~v~~i~~G~~h~-~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 176 AE-AQSGVDDVAGG-----IFHSLAL-KDGKVIAWGDNRYKQTTVPTEA-LSGVSAIASGEWYS-LALK--NGKVIAWGS 244 (282)
T ss_dssp GG-GGSSEEEEEEC-----SSEEEEE-ETTEEEEEECCTTSTTCCCGGG-GSSCCEEEECSSCE-EEEE--TTEEEEEST
T ss_pred ee-cCCCeEEEEec-----CCEEEEE-ECCeEEEEECCCCCCCCCCccc-CCCceEEEcCCCEE-EEEE--CCEEEEecC
Confidence 11 13467777764 2334444 699999998764 332111111 24577776544333 3333 888888854
Q ss_pred CCCC
Q 005325 353 PDLG 356 (702)
Q Consensus 353 p~lg 356 (702)
...+
T Consensus 245 n~~g 248 (282)
T 3qhy_B 245 SRTA 248 (282)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 4433
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.26 E-value=16 Score=41.93 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=99.2
Q ss_pred CCCCEEEEEEecC----CcEEEEEcCCceEEEee-e-----cC--CceEEEEEEcCCCCEEEEEECC------CeEEEEe
Q 005325 72 PDGEFLIVSGIYP----PQVKVYELRQLSLKFER-H-----LD--SEIINFEVLADDYSKLAFLCAD------RSISLHA 133 (702)
Q Consensus 72 pDG~~llatGs~d----g~I~vwdl~~~~~~~~~-h-----~~--~~vv~~~~ls~dg~~Las~s~D------~~I~iw~ 133 (702)
.++. |++.|+.+ ..+.+||+.+....... . .. -.-..++.++.++..+++|+.+ ..+.+|+
T Consensus 396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 4444 47777753 46888988774332211 0 00 1112344443255666777653 2466777
Q ss_pred cCCceEE-Ee---cCCCccceEEecCCCcE-EEEecCC--CEEEEECCCCeEEEEee-----cCCCCeEEEEEcCC-CCE
Q 005325 134 KYGKHYS-LR---IPRMGRDMAYNSWSCDL-LCAASSP--ELYRINLEQGRFLSSLN-----TQSPALNVVSRSKL-HGL 200 (702)
Q Consensus 134 ~~g~~~~-~~---i~~~~~~l~~~~~s~~l-lv~s~d~--~V~vwdl~~g~~~~~l~-----~h~~~V~~l~~sp~-~~l 200 (702)
....... +. .+.....++... ...+ ++|+.++ .+++||+.+......-. .......++.+... +.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 7643222 21 122222333323 4444 4444433 69999999887543221 11122233555655 678
Q ss_pred EEEEEc--C-----CeEEEEECCCCcc-----eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC--------CCeEE
Q 005325 201 IACGGE--D-----GAVECFDMRMRSS-----AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS--------TGKVL 260 (702)
Q Consensus 201 lasgs~--D-----G~V~iWD~~t~~~-----v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~--------DG~V~ 260 (702)
++.|+. + ..|.+||+.+... -..+... + ........++.+ .+ +.+++.|+. ...|.
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p-~~~R~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-P-LFQRYGSQIKYI-TP-RKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-G-GGCCBSCEEEEE-ET-TEEEEECCBCSSCCCCTTTSEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-C-CCCcccceEEEe-CC-CEEEEECCccCCCCCCCCCeEE
Confidence 888876 2 4689999988762 1222110 0 001122333333 33 567777764 34689
Q ss_pred EEEcCCCeEE
Q 005325 261 IYDLRSSYPI 270 (702)
Q Consensus 261 lwDlrs~~~l 270 (702)
+||+.+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.87 E-value=15 Score=37.28 Aligned_cols=235 Identities=9% Similarity=0.083 Sum_probs=124.1
Q ss_pred ECCCCCEEEEEEec-CCcEEEEEcCCc-eEEEeeecCCceEEEEEEcCCCCEEEEEECC--------------CeEEEEe
Q 005325 70 ETPDGEFLIVSGIY-PPQVKVYELRQL-SLKFERHLDSEIINFEVLADDYSKLAFLCAD--------------RSISLHA 133 (702)
Q Consensus 70 ~SpDG~~llatGs~-dg~I~vwdl~~~-~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D--------------~~I~iw~ 133 (702)
|+++|.+|..+... ++.|...+.... ..++... .+..+++++.+|+.+... ..|...+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 45688886665544 455555555442 2222222 235567788898877653 3566666
Q ss_pred cCCceEEEecCCCccceEEecCCCcEEEEe----cCCCEEEEECCCCeEEEEeecCCCCeEEEEEcCCCCEEEEEEc-CC
Q 005325 134 KYGKHYSLRIPRMGRDMAYNSWSCDLLCAA----SSPELYRINLEQGRFLSSLNTQSPALNVVSRSKLHGLIACGGE-DG 208 (702)
Q Consensus 134 ~~g~~~~~~i~~~~~~l~~~~~s~~llv~s----~d~~V~vwdl~~g~~~~~l~~h~~~V~~l~~sp~~~llasgs~-DG 208 (702)
+.|.....-.... ...+.+....|+.+. ....|++.++.... ...+..+.. .+++|++..|+..+. ..
T Consensus 95 ~dg~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 95 RNGHGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp TTSCCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCCCcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 6655433322222 224445555566655 34468888887543 333444432 345677777776554 57
Q ss_pred eEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCC--CeEEEEEcCCCeEEEEeeccCCCCeEEEEE
Q 005325 209 AVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSST--GKVLIYDLRSSYPIRVKDHMFDSPIVDIKW 286 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~D--G~V~lwDlrs~~~l~~~~h~~~~~I~sl~f 286 (702)
.|..-++..+.....+.. ... +.++|+ +.+|+-.... ..|..-++.......+... .+.. |
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---------~~~-~~~~P~-g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~----~~~~--~ 230 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---------NCY-KPVVLD-DTNVYYMDVNRDNAIVHVNINNPNPVVLTEA----NIEH--Y 230 (302)
T ss_dssp CEEEEETTTTEEEEEECS---------CEE-EEEEEE-TTEEEEEEGGGTTEEEEECSSSCCCEECSCS----CEEE--E
T ss_pred eEEEEECCCCCEEEEeCC---------Ccc-ceeeec-CCEEEEEEcCCCcEEEEEECCCCCeEEEeCC----Ccce--E
Confidence 788888876543322221 222 346688 7776654433 3677777776554444322 3433 5
Q ss_pred eeccCCCCCeEEEeC--CCEEEEEeCCCCceeEEecCCCCceeEEEEEcCCCEEEEEe
Q 005325 287 HQSINTERPKLITTD--NHIVRIWDPETGESMTSIEPTAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 287 sp~~~~~~~ll~ss~--Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~~~l~~a~ 342 (702)
+| .+..+..+.+ ...|..-++. |.....+.. ..+. .+.+.+..|+-..
T Consensus 231 ~~---~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~--~~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 231 NV---YGSLIFYQRGGDNPALCVVKND-GTGFKELAK--GEFC--NINVTSQYVYFTD 280 (302)
T ss_dssp EE---ETTEEEEEECSSSCEEEEEETT-SCCCEEEEE--SCEE--EEEECSSEEEEEE
T ss_pred EE---CCCEEEEEECCCCcEEEEEECC-CCccEEeeC--Cccc--eEEEeCCEEEEEE
Confidence 55 3555555433 4566666665 333333322 1233 3445555555544
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.53 E-value=11 Score=37.90 Aligned_cols=235 Identities=11% Similarity=0.027 Sum_probs=117.6
Q ss_pred eeEEEECCCCCEEEEEEecCCcEEEEEcCC-ceEEEeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecC--CceE-E
Q 005325 65 TTKIRETPDGEFLIVSGIYPPQVKVYELRQ-LSLKFERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKY--GKHY-S 140 (702)
Q Consensus 65 v~~i~~SpDG~~llatGs~dg~I~vwdl~~-~~~~~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~--g~~~-~ 140 (702)
|..|+... .+.++. . ++.|..|-... ..+-........++.+. ... ...+... |+.|..|-.. |..- .
T Consensus 26 i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia-~G~--~hs~~l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 26 VDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIA-AGN--YHSLALK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp CCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEE-ECS--SEEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred CcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEE-eCC--CEEEEEE-CCEEEEeeCCCCCCCCCC
Confidence 45555443 232344 4 88898887665 11111111112233333 222 3444445 8999999543 3221 1
Q ss_pred EecCCCccceEEecCCCcEEEEecCCCEEEEECCC-CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCc
Q 005325 141 LRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ-GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRS 219 (702)
Q Consensus 141 ~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~ 219 (702)
..+......+++- ....++.. ++.||.|-... +++-.+. .....|..|+....+.+++ + ||.|..|-.....
T Consensus 98 ~~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~-~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCc-cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCC
Confidence 1111111122222 22234445 89999995443 3321111 1223577777665554443 3 7999999776533
Q ss_pred ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 220 SAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 220 ~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
.+.. ... ....|..|+.... ..++. .+|.|..|-....-.+-+... ....|..|+-. ..+.++-
T Consensus 171 qlg~-p~~-----~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~G-----~~h~~al 234 (282)
T 3qhy_B 171 QTTV-PAE-----AQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTVPTE-ALSGVSAIASG-----EWYSLAL 234 (282)
T ss_dssp TTSC-CGG-----GGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCCCGG-GGSSCCEEEEC-----SSCEEEE
T ss_pred CCCC-cee-----cCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCCCcc-cCCCceEEEcC-----CCEEEEE
Confidence 2221 111 0356888887644 44555 599999997654221111111 12357777754 3344444
Q ss_pred eCCCEEEEEeCCCCceeEEecCCCCceeEEEEEcCC
Q 005325 300 TDNHIVRIWDPETGESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 300 s~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
. ++.|..|-.....++. . ...|.+|+.-...
T Consensus 235 ~-~g~v~~wG~n~~gq~~---v-~~~v~~iaaG~~h 265 (282)
T 3qhy_B 235 K-NGKVIAWGSSRTAPSS---V-QSGVSSIEAGPNA 265 (282)
T ss_dssp E-TTEEEEESTTCCCCGG---G-SSCEEEEEECSSC
T ss_pred E-CCEEEEecCCCCcccc---C-CCCcEEEEECcCe
Confidence 4 9999999877533321 1 3356666554443
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.87 E-value=23 Score=36.43 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=114.3
Q ss_pred ecCCCcEEEEecCCCEEEEE---CC------CCeEEEEe-ec-CCCCeEEE-EEcC--CCCEEEEEEcCCeEEEEECCCC
Q 005325 153 NSWSCDLLCAASSPELYRIN---LE------QGRFLSSL-NT-QSPALNVV-SRSK--LHGLIACGGEDGAVECFDMRMR 218 (702)
Q Consensus 153 ~~~s~~llv~s~d~~V~vwd---l~------~g~~~~~l-~~-h~~~V~~l-~~sp--~~~llasgs~DG~V~iWD~~t~ 218 (702)
......+++.+..|.+|.+. +. .|..+..+ .. ....|.++ .+.+ +..++++.+.+|.|+-..+...
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 34444577788888877764 22 23332211 11 12345444 4442 4679999999999998886542
Q ss_pred cc-----eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC--C----CeE---EEEeeccCCCCeEEE
Q 005325 219 SS-----AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR--S----SYP---IRVKDHMFDSPIVDI 284 (702)
Q Consensus 219 ~~-----v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr--s----~~~---l~~~~h~~~~~I~sl 284 (702)
.. +..+... ....+..+..... ...|+..+..|.+..+.+. . ++. +....-..+..|.++
T Consensus 130 ~~~~r~G~~~i~lk-----e~D~lv~~~~~~~-~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~ 203 (327)
T 3uc1_A 130 DSNRSGGIVAVNLR-----DNDELVGAVLCSA-GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSL 203 (327)
T ss_dssp CCCCSSCEESCBCC-----TTCCEEEEEEECT-TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEE
T ss_pred hccccCceEEEEEC-----CCCEEEEEEEecC-CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEE
Confidence 21 1111111 1355666555555 5788888999998888766 2 111 111111124567777
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCC-------CceeEEecC--CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPET-------GESMTSIEP--TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~~--h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
...+ .+..+++.+..|.++.-.+.. ++-+..+.. -.+.+-.+....+...+++.+..+.+..|.+..+
T Consensus 204 ~~~~---~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 204 NVVR---EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EECC---TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEC---CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 6653 355788888999998877542 122333322 1334555555556667888899999888877655
Q ss_pred CC
Q 005325 356 GP 357 (702)
Q Consensus 356 g~ 357 (702)
.+
T Consensus 281 ~~ 282 (327)
T 3uc1_A 281 RK 282 (327)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 349
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=87.68 E-value=0.1 Score=52.02 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 005325 682 QGRGGRGRGGYRGR 695 (702)
Q Consensus 682 ~~~~~~~~~~~~~~ 695 (702)
||++||||||-|||
T Consensus 233 ~~~~rgg~g~~~~~ 246 (273)
T 3u5c_h 233 FNNRRGGRGARKGN 246 (273)
T ss_dssp --------------
T ss_pred cCCCcCCcccccCC
Confidence 45566666655555
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.37 E-value=34 Score=35.62 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=92.9
Q ss_pred eEEecC--CCcEEEEecCCCEEEEECCCCe--EEEEee----------------cCCCCeEEEEEcCC-CCEEEEEEcCC
Q 005325 150 MAYNSW--SCDLLCAASSPELYRINLEQGR--FLSSLN----------------TQSPALNVVSRSKL-HGLIACGGEDG 208 (702)
Q Consensus 150 l~~~~~--s~~llv~s~d~~V~vwdl~~g~--~~~~l~----------------~h~~~V~~l~~sp~-~~llasgs~DG 208 (702)
+++.+. ...+++++..+.|++.+-.... .+..+. .....|.+|.++|. ...|..++.++
T Consensus 120 l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~g 199 (394)
T 3b7f_A 120 LTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSG 199 (394)
T ss_dssp EEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETB
T ss_pred EEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCC
Confidence 455543 3457887777778776432222 211110 11235789999884 34445555445
Q ss_pred eEEEEECCCCcceeEEecccCC---C----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeeccCC--
Q 005325 209 AVECFDMRMRSSAARINAVAPA---G----DADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHMFD-- 278 (702)
Q Consensus 209 ~V~iWD~~t~~~v~~l~~~~~~---~----~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~~~-- 278 (702)
.|...+- .+..-..+...... . .....|.+|+++|.+...|.+++..| |...+-. +.... +......
T Consensus 200 gl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~ 276 (394)
T 3b7f_A 200 GVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAMPREV 276 (394)
T ss_dssp EEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGSCTTT
T ss_pred CEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCCCCCC
Confidence 4444322 22222222211000 0 00135899999986457788877655 4443322 22222 1110111
Q ss_pred -CCeEEEEEeeccCCCCCeEEEeC-----------CCEEEEEeCCC-CceeEEec---CCCC-----ceeEEEEEcC-CC
Q 005325 279 -SPIVDIKWHQSINTERPKLITTD-----------NHIVRIWDPET-GESMTSIE---PTAG-----KINDVCVFKD-SG 336 (702)
Q Consensus 279 -~~I~sl~fsp~~~~~~~ll~ss~-----------Dg~V~IWd~~t-g~~l~~i~---~h~~-----~I~~v~~~p~-~~ 336 (702)
..+.+|.++| .+.+.+++++. ++...||.... |+....+. +... ....+++.|. ..
T Consensus 277 ~~~~~~i~~~p--~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~ 354 (394)
T 3b7f_A 277 GDIGFPIVVHQ--RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPV 354 (394)
T ss_dssp CSCEEEEEECS--SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSC
T ss_pred ccceEEEEECC--CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCC
Confidence 3457788876 23455666531 22344555443 55555543 1111 1235788874 34
Q ss_pred EEEEEeCCCcE
Q 005325 337 LLLLALDCSQI 347 (702)
Q Consensus 337 ~l~~a~~d~~I 347 (702)
.|++++..+.|
T Consensus 355 ~l~~g~~~g~l 365 (394)
T 3b7f_A 355 GVYFGTTGGEI 365 (394)
T ss_dssp CEEEECTTSCE
T ss_pred EEEEEeCCCeE
Confidence 56666554443
No 351
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=85.86 E-value=0.15 Score=44.79 Aligned_cols=7 Identities=57% Similarity=0.957 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 005325 696 ARRGGRR 702 (702)
Q Consensus 696 ~~~~~~~ 702 (702)
||||+.|
T Consensus 112 r~~~~~~ 118 (119)
T 1b34_A 112 RGRGGPR 118 (119)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 4666554
No 352
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.67 E-value=31 Score=34.48 Aligned_cols=191 Identities=13% Similarity=0.087 Sum_probs=110.1
Q ss_pred CCCcEEEEecCCCEEEEE---CCCCeEEEEeecCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEECCCCc----ceeEEec
Q 005325 155 WSCDLLCAASSPELYRIN---LEQGRFLSSLNTQSPALNVVSRSK-LHGLIACGGEDGAVECFDMRMRS----SAARINA 226 (702)
Q Consensus 155 ~s~~llv~s~d~~V~vwd---l~~g~~~~~l~~h~~~V~~l~~sp-~~~llasgs~DG~V~iWD~~t~~----~v~~l~~ 226 (702)
....+++.++.|.+|... +..+.....+. ....|..+.... +...++..+.+|.|+...+.... -+..+..
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 334466666666666543 22221111122 233455553321 45789999999999998865432 1111111
Q ss_pred ccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 227 VAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 227 ~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
. ....+..+..... ...|+..+..|.+..+.... ..=+....-..+..|..+...+ ++..+++.
T Consensus 113 k-----egD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~---~~~~ll~~ 183 (276)
T 3no0_A 113 T-----EGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN---GEPYLLVI 183 (276)
T ss_dssp C-----TTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES---SCSEEEEE
T ss_pred C-----CCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC---CCCEEEEE
Confidence 1 1356666666655 67888999999998887532 1111111111245666665553 35578888
Q ss_pred eCCCEEEEEeCCC-------CceeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEE--EEcCCCC
Q 005325 300 TDNHIVRIWDPET-------GESMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPS--YFIPDLG 356 (702)
Q Consensus 300 s~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~--~~ip~lg 356 (702)
+..|.++...+.. ++-+..+.. .+.+..+........+++.+..+.+.. +.+..+.
T Consensus 184 T~~G~~kr~~~~e~~~~~R~gkGv~~i~~-~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 184 TAKGRVKKISHEEIPKTNRGVKGTEVSGT-KDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp ETTSCEEEEEGGGSCCCCTTCCCEECCCS-SSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred eCCCcEEEeEHHHcccCCCCCcceEEEcC-CCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 8889988887642 333444432 456666555555567888889999888 8765543
No 353
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.78 E-value=10 Score=41.03 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ecc-----CCCCeEEEEEeeccCCCCCeEEEeC------
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVK--DHM-----FDSPIVDIKWHQSINTERPKLITTD------ 301 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~--~h~-----~~~~I~sl~fsp~~~~~~~ll~ss~------ 301 (702)
....+|+|.|+ |.++++-...+.|++++...+....+. ... ....+..|+|+|.+..++.+.++..
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45679999999 886666444457988887655432221 110 1345679999985544566665542
Q ss_pred -------CCEEEEEeCCCC-------ceeE-EecC-CCCceeEEEEEcCCCEEEEEeCCC
Q 005325 302 -------NHIVRIWDPETG-------ESMT-SIEP-TAGKINDVCVFKDSGLLLLALDCS 345 (702)
Q Consensus 302 -------Dg~V~IWd~~tg-------~~l~-~i~~-h~~~I~~v~~~p~~~~l~~a~~d~ 345 (702)
...|.-|+...+ +.+. .+.. .......|+|.|++.+.++.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence 134555554321 1122 2332 123578899999998777766543
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.60 E-value=54 Score=36.38 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=74.7
Q ss_pred eEEEEECCC----Cc-ceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC------CeE------E
Q 005325 209 AVECFDMRM----RS-SAARINAVAPAGDADQEVTALEFDSNGGFLMGVG-SSTGKVLIYDLRS------SYP------I 270 (702)
Q Consensus 209 ~V~iWD~~t----~~-~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG-s~DG~V~lwDlrs------~~~------l 270 (702)
.|.+.|.+. +. .+..+..+ .....+.++|| |.+++++ -.+.+|.|+|++. .+. +
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~p-------ksPHGv~vsPD-Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~ 370 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVP-------KNPHGCNTSSD-GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVI 370 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEES-------SSCCCEEECTT-SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE
T ss_pred CeeEEccccccccCCceEEEEeCC-------CCCcceeeCCC-CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccce
Confidence 366677665 22 23333333 55678999999 8877654 5688999999984 111 1
Q ss_pred E-EeeccCCCCeEEEEEeeccCCCCCeEEEe-CCCEEEEEeCCCC----------ceeEEecCCCCceeEEEE------E
Q 005325 271 R-VKDHMFDSPIVDIKWHQSINTERPKLITT-DNHIVRIWDPETG----------ESMTSIEPTAGKINDVCV------F 332 (702)
Q Consensus 271 ~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg----------~~l~~i~~h~~~I~~v~~------~ 332 (702)
. ... -+......+|.+ .+...++- -|..|.-|++... ..+..+..|-.+- .+.. .
T Consensus 371 ~ae~e--~GlGPlHt~Fd~----~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~ 443 (638)
T 3sbq_A 371 VGEPE--LGLGPLHTTFDG----RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNE 443 (638)
T ss_dssp EECCB--CCSCEEEEEECS----SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTT
T ss_pred Eeecc--CCCcccEEEECC----CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCC
Confidence 1 111 256678899986 55444444 5999999999753 4566666654332 2222 3
Q ss_pred cCCCEEEEEeCC
Q 005325 333 KDSGLLLLALDC 344 (702)
Q Consensus 333 p~~~~l~~a~~d 344 (702)
|++.+|++.+.-
T Consensus 444 ~dGk~lv~lnK~ 455 (638)
T 3sbq_A 444 ADGKWLVALSKF 455 (638)
T ss_dssp CCSCEEEEEESC
T ss_pred CCccEEEEeccc
Confidence 567777776643
No 355
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=83.37 E-value=42 Score=34.08 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=112.3
Q ss_pred EecCCCcEEEEecCCCEEEEECC---------CCeEEE---EeecCCCCeEEEEE-c--CCCCEEEEEEcCCeEEEEECC
Q 005325 152 YNSWSCDLLCAASSPELYRINLE---------QGRFLS---SLNTQSPALNVVSR-S--KLHGLIACGGEDGAVECFDMR 216 (702)
Q Consensus 152 ~~~~s~~llv~s~d~~V~vwdl~---------~g~~~~---~l~~h~~~V~~l~~-s--p~~~llasgs~DG~V~iWD~~ 216 (702)
.......+++.+..|.+|.+... .|..+. .+. ....|.++.. . ++..+++..+..|.++-..+.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 34445568888888888877542 233221 122 2234555543 2 345678889999999998764
Q ss_pred CCcc-----eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-------CeEEEEeeccCCCCeEEE
Q 005325 217 MRSS-----AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS-------SYPIRVKDHMFDSPIVDI 284 (702)
Q Consensus 217 t~~~-----v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs-------~~~l~~~~h~~~~~I~sl 284 (702)
.... +..+... . ...+-.+..... ...|+..+..|.+..+.... ..-+.......+..|.++
T Consensus 128 e~~~~~r~G~~~i~l~----~-~d~lv~~~~~~~-~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~ 201 (307)
T 1zi0_A 128 EFNRLRTAGKVAIKLV----D-GDELIGVDLTSG-EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL 201 (307)
T ss_dssp GGTTCCTTCEESSCCC----T-TCCEEEEEEECT-TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEE
T ss_pred HhhccccCCeEEEEEC----C-CCEEEEEEEeCC-CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEE
Confidence 2211 1111111 1 245555555544 56788889999998887642 111221111124567776
Q ss_pred EEeeccCCCCCeEEEeCCCEEEEEeCCC-------Cc--eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 285 KWHQSINTERPKLITTDNHIVRIWDPET-------GE--SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 285 ~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~--~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
...+ ++..+++.+..|.++-.++.. ++ ....+..-.+.+-.+....+...+++.+.++.+..+.+..+
T Consensus 202 ~~~~---~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 202 IVPR---GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp ECCC---SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEec---CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 5542 344578888889998887732 11 12222222356655555555566778888888888877665
Q ss_pred CC
Q 005325 356 GP 357 (702)
Q Consensus 356 g~ 357 (702)
.+
T Consensus 279 ~~ 280 (307)
T 1zi0_A 279 SI 280 (307)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.36 E-value=43 Score=34.28 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=127.3
Q ss_pred CCCEEEEEECCCeEEEEecC-----CceEEEecCC--CccceEEecCCCcEEEEecCCCEEEEECC---------CCeEE
Q 005325 116 DYSKLAFLCADRSISLHAKY-----GKHYSLRIPR--MGRDMAYNSWSCDLLCAASSPELYRINLE---------QGRFL 179 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~-----g~~~~~~i~~--~~~~l~~~~~s~~llv~s~d~~V~vwdl~---------~g~~~ 179 (702)
+...+++.+.+|.|+--... +.. .+.+.. ....+........+++.+..|.+|.+... .|..+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~-~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQ-DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTC-CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCcc-ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 44567888888888754321 100 011111 11133344455568888888988887542 23322
Q ss_pred EEe-ec-CCCCeEEE-EEcC--CCCEEEEEEcCCeEEEEECCCCc------ceeEEecccCCCCCCCCeEEEEEcCCCCC
Q 005325 180 SSL-NT-QSPALNVV-SRSK--LHGLIACGGEDGAVECFDMRMRS------SAARINAVAPAGDADQEVTALEFDSNGGF 248 (702)
Q Consensus 180 ~~l-~~-h~~~V~~l-~~sp--~~~llasgs~DG~V~iWD~~t~~------~v~~l~~~~~~~~~~~~Vtslafspd~g~ 248 (702)
..+ .. ....|.++ .+.+ +..+|+.++.+|.++...+.... -+..+... ....+-.+..... ..
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-----e~d~lv~~~~~~~-~~ 156 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-----NDDQVVDVHLTDG-MN 156 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-----TTCCEEEEEEECS-CS
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-----CCCEEEEEEEeCC-CC
Confidence 211 11 12245544 4432 25678889999999998875221 12222221 1245555555544 57
Q ss_pred EEEEEeCCCeEEEEEcCC-------CeEEEEeeccCCCCeEEEEEeeccCCCC-CeEEEeCCCEEEEEeCCC-------C
Q 005325 249 LMGVGSSTGKVLIYDLRS-------SYPIRVKDHMFDSPIVDIKWHQSINTER-PKLITTDNHIVRIWDPET-------G 313 (702)
Q Consensus 249 ~LasGs~DG~V~lwDlrs-------~~~l~~~~h~~~~~I~sl~fsp~~~~~~-~ll~ss~Dg~V~IWd~~t-------g 313 (702)
.|+..+.+|.+..+.... ..-+....-..+..|.++...+ ++. .+++.+..|..+..++.. +
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~---~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~ 233 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLIT---SKDESIVVATQRGAVKKMKLTEFEKATRAK 233 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEC---CTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEc---CCCcEEEEEECCCceEEEEHHHccccCCCC
Confidence 888899999999887642 1222211112245677776553 233 577788888888777643 2
Q ss_pred ceeEEec---CCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCCC
Q 005325 314 ESMTSIE---PTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 314 ~~l~~i~---~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~lg 356 (702)
+-+..+. .....+..+....+...+++.+..+.+..+.+..+.
T Consensus 234 kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~ 279 (323)
T 1wp5_A 234 RGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279 (323)
T ss_dssp CCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSC
T ss_pred CCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcC
Confidence 2222222 212245544444555667788888888877765543
No 357
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.09 E-value=34 Score=35.86 Aligned_cols=156 Identities=11% Similarity=0.042 Sum_probs=97.1
Q ss_pred cCCCCEEEEEEcCCeEEEEECCC-------CcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE---c
Q 005325 195 SKLHGLIACGGEDGAVECFDMRM-------RSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD---L 264 (702)
Q Consensus 195 sp~~~llasgs~DG~V~iWD~~t-------~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD---l 264 (702)
-|+..++++.+.+|.|+--.+.. +.-+..+... ....+..+..... ...|+..+..|.++-+. +
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-----e~D~l~~~~~~~t-~d~ll~fT~~G~~~~~~~~ei 77 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-----EEDFIDQLWLVNT-HDTLLTFTSSGKVFWLPVHQL 77 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-----CCCCEEEEEEECT-TCEEEEEETTSEEEEEEGGGS
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-----CCCEEEEEEEecC-CCEEEEEeCCCeEEEEEHHHC
Confidence 46778999999999999765532 1123333332 1356666666655 67788889999877655 3
Q ss_pred CC------CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-------CceeEEecCCCCceeEEE
Q 005325 265 RS------SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-------GESMTSIEPTAGKINDVC 330 (702)
Q Consensus 265 rs------~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~ 330 (702)
+. |.++. +.....+..|.++...+.+..+.++++.+..|.++...+.. |.....+.. ...+-.+.
T Consensus 78 p~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 78 PEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp CBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE
T ss_pred cCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE
Confidence 22 33322 11112255677766543222355788889999999987642 222223433 45566666
Q ss_pred EEcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 331 VFKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 331 ~~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
.......|++.+..|.+..|.+..+.+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~ 183 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRS 183 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCB
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCc
Confidence 666667899999999999887655433
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.43 E-value=30 Score=41.25 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.+.+++..++..++++-+.|+++++|++.+++++.+....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 5677888888899999999999999999999999988764
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.09 E-value=50 Score=33.46 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=89.6
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCccee-------EEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc---C
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSSAA-------RINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL---R 265 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~v~-------~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl---r 265 (702)
|+..++++.+.+|.|+--.+.+..... .+... ....+..+..... ...|+..+..|.++-+.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-----e~D~l~~~~~~~~-~~~ll~fT~~G~~~~~~~~elp 74 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-----EEDFIDRLLVANT-HDHILCFSSRGRVYSMKVYQLP 74 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-------------------------CCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-----CCCEEEEEEEECC-CCEEEEEECCCEEEEEEhhHCc
Confidence 345678888999999877765432111 11111 1245555554444 577888889998666544 3
Q ss_pred C------CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-------CceeEEecCCCCceeEEEE
Q 005325 266 S------SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-------GESMTSIEPTAGKINDVCV 331 (702)
Q Consensus 266 s------~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~ 331 (702)
. |.++. +.....+..|.++...+.+.++.++++.+..|.++-..+.. |.....+.. ...+-.+..
T Consensus 75 ~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~-~d~lv~~~~ 153 (307)
T 1zi0_A 75 EATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD-GDELIGVDL 153 (307)
T ss_dssp CCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC-CCEEEEEEE
Confidence 2 33322 11111245677765432222345688888999999987642 222223444 356666666
Q ss_pred EcCCCEEEEEeCCCcEEEEEcCCCCC
Q 005325 332 FKDSGLLLLALDCSQIPSYFIPDLGP 357 (702)
Q Consensus 332 ~p~~~~l~~a~~d~~I~~~~ip~lg~ 357 (702)
......+++.+..|.+..|.+..+.+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~ 179 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRA 179 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCc
Confidence 66667899999999999888766543
No 360
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=80.79 E-value=60 Score=34.18 Aligned_cols=226 Identities=12% Similarity=0.014 Sum_probs=117.1
Q ss_pred CCCEEEEEECCCeEEEEecC--Cc-----------eEEEecCCCccceEEecCCCcEEEEecCCCEEEEEC---CCCeE-
Q 005325 116 DYSKLAFLCADRSISLHAKY--GK-----------HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINL---EQGRF- 178 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~--g~-----------~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl---~~g~~- 178 (702)
.+.+.+....|+.|..|-.. |. .....+......+....-....++...++.||.|-. ..+++
T Consensus 83 G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG 162 (423)
T 3mvd_K 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMG 162 (423)
T ss_dssp CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEE
T ss_pred CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcC
Confidence 44677888899999999432 21 111222211222222223334566678899999974 33332
Q ss_pred -------EEEeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc--------------cC---CCCC
Q 005325 179 -------LSSLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV--------------AP---AGDA 233 (702)
Q Consensus 179 -------~~~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~--------------~~---~~~~ 233 (702)
..+... ....|..|+.... ..+.-+.+|.|..|-....-.+..-... .+ ....
T Consensus 163 ~~~~~~~~~p~~~~~~~~i~~va~G~~--hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~ 240 (423)
T 3mvd_K 163 LTIDGNKRTPIDLMEGTVCCSIASGAD--HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240 (423)
T ss_dssp SBTTBCEEEEEESSTTCCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT
T ss_pred cCCCCCCceeeEecCCCcEEEEecCCC--eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC
Confidence 111111 2235667765544 3444467899999965432111110000 00 0001
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC----------eEEE--EeeccCCCCeEEEEEeeccCCCCCeEEEeC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS----------YPIR--VKDHMFDSPIVDIKWHQSINTERPKLITTD 301 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~----------~~l~--~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~ 301 (702)
...|..|+.... ..++.-+.+|.|..|-.... .... +... ...|..|+-- ..+.++-..
T Consensus 241 ~~~v~~i~~g~~--~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~G-----~~ht~alt~ 311 (423)
T 3mvd_K 241 AKPFEAIWATNY--CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAGG-----QHHTVILTT 311 (423)
T ss_dssp CCCEEEEEEETT--EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEEC-----SSEEEEEET
T ss_pred CccEEEEEECCc--EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC--CCCeEEEEcc-----cCeEEEEeC
Confidence 245666666532 34444468999999964421 1111 1111 2467777654 445666677
Q ss_pred CCEEEEEeCCC-Cc-----------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 302 NHIVRIWDPET-GE-----------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 302 Dg~V~IWd~~t-g~-----------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
++.|..|-... |+ ....+..-...|..|+.-. ...++...++.|+.|=...
T Consensus 312 ~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 312 DLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCT
T ss_pred CCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCC
Confidence 89999997643 11 1122332223566665543 3344457889999986544
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.32 E-value=49 Score=33.88 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=91.8
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcc--eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc---CC----
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSS--AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDL---RS---- 266 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~--v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDl---rs---- 266 (702)
|+..++++.+.+|.|+--.+..... ...+... ....+..+..... ...|+..++.|.++-+.. ..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-----e~D~l~~~~~~~t-~d~ll~fT~~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-----DTDRLLAMLEMNT-KDVLLLFTNKGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-----TTCCEEEEEEEET-TSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-----CCCEEEEEEEECC-CCEEEEEECCCEEEEEEHHHCcCCCCC
Confidence 4566788899999998776542211 0011111 1355555555555 678888899998766654 21
Q ss_pred --CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC--------CceeEEecCCCCceeEEEEEcCC
Q 005325 267 --SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET--------GESMTSIEPTAGKINDVCVFKDS 335 (702)
Q Consensus 267 --~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t--------g~~l~~i~~h~~~I~~v~~~p~~ 335 (702)
|.|+. ......+..|.++...+.+.++.++++.+..|.++-..+.. |.....+.. ...+-.+......
T Consensus 77 a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~ 155 (323)
T 1wp5_A 77 DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGM 155 (323)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSC
T ss_pred CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCC
Confidence 33332 11111245677665443221245688889999999988742 222223333 3566666666666
Q ss_pred CEEEEEeCCCcEEEEEcCCCC
Q 005325 336 GLLLLALDCSQIPSYFIPDLG 356 (702)
Q Consensus 336 ~~l~~a~~d~~I~~~~ip~lg 356 (702)
..|++.+..|.+..|.+..+.
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~ 176 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVS 176 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSC
T ss_pred CEEEEEeCCCcEEEEEHHHCc
Confidence 779999999999988876553
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=77.88 E-value=63 Score=32.76 Aligned_cols=230 Identities=14% Similarity=0.074 Sum_probs=124.0
Q ss_pred CCCEEEEEECCCeEEEEecCCc---------eEEEecCCCc--cceEEecCCCcEEEEecCCCEEEEECCC---C-----
Q 005325 116 DYSKLAFLCADRSISLHAKYGK---------HYSLRIPRMG--RDMAYNSWSCDLLCAASSPELYRINLEQ---G----- 176 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~g~---------~~~~~i~~~~--~~l~~~~~s~~llv~s~d~~V~vwdl~~---g----- 176 (702)
+...+++++.+|.|+--..... ...+.+.... ..+........+++.+..|.++.+.... .
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 4467888889998876533210 0001111111 1233334455588888888888875432 1
Q ss_pred -eEE---EEeecCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEECCCCc-----ceeEEecccCCCCCCCCeEEEEEcC
Q 005325 177 -RFL---SSLNTQSPALNVVSRSK---LHGLIACGGEDGAVECFDMRMRS-----SAARINAVAPAGDADQEVTALEFDS 244 (702)
Q Consensus 177 -~~~---~~l~~h~~~V~~l~~sp---~~~llasgs~DG~V~iWD~~t~~-----~v~~l~~~~~~~~~~~~Vtslafsp 244 (702)
..+ -.+... ..|.++...+ ....|+..+..|.++...+.... -+..+... ....+..+....
T Consensus 87 G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~-----~~d~lv~~~~~~ 160 (312)
T 1suu_A 87 GQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-----DKDFVTSAEIVF 160 (312)
T ss_dssp -CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-----TTCCEEEEEEEC
T ss_pred CcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC-----CCCEEEEEEEeC
Confidence 110 011111 2344443332 35678888999999988875321 11112211 135566665554
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC----Ce---EEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-----
Q 005325 245 NGGFLMGVGSSTGKVLIYDLRS----SY---PIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET----- 312 (702)
Q Consensus 245 d~g~~LasGs~DG~V~lwDlrs----~~---~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t----- 312 (702)
. ...++..+.+|.+..+.+.. ++ =+....-..+..|.++...+ ++..+++.+..|.++...+..
T Consensus 161 ~-~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~---~~~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 161 K-DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK---ENPYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp T-TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT---TCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred C-CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC---CCCeEEEEECCCceEEEEHHHhcccC
Confidence 4 56888899999999998753 11 11111111245666665542 345577888889998888743
Q ss_pred --CceeEEec---CCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 313 --GESMTSIE---PTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 313 --g~~l~~i~---~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
++-+..+. .....+..+........+++.+..+.+....+..+
T Consensus 237 R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 237 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp TTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred CCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 12222222 22345555444455566777777777666655554
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.29 E-value=1.1e+02 Score=35.08 Aligned_cols=178 Identities=10% Similarity=0.010 Sum_probs=92.7
Q ss_pred cCCcEEEEEcCC----ceEEEeeecCCceEEEEEEcCCCC-----EEEEEECC---CeEEEEecC---CceEEEecCCCc
Q 005325 83 YPPQVKVYELRQ----LSLKFERHLDSEIINFEVLADDYS-----KLAFLCAD---RSISLHAKY---GKHYSLRIPRMG 147 (702)
Q Consensus 83 ~dg~I~vwdl~~----~~~~~~~h~~~~vv~~~~ls~dg~-----~Las~s~D---~~I~iw~~~---g~~~~~~i~~~~ 147 (702)
+...|+.|.+.+ -.+.|..... .+......+.++. .+++.+.+ ..+.+.+.. +....+..|...
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCEEEEEECCCChHHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 456799998876 3345555433 3333344555655 24444423 223333444 333334334321
Q ss_pred cceEEecCCCcEEEE-----------ecCCCEEEEECCCCe-------EEEEeecC--CCCeEEEEEcCCCCEEEEEEcC
Q 005325 148 RDMAYNSWSCDLLCA-----------ASSPELYRINLEQGR-------FLSSLNTQ--SPALNVVSRSKLHGLIACGGED 207 (702)
Q Consensus 148 ~~l~~~~~s~~llv~-----------s~d~~V~vwdl~~g~-------~~~~l~~h--~~~V~~l~~sp~~~llasgs~D 207 (702)
.+.... ...+++. ...+.|.++++.++. ....+-.+ ...+..+.|..+ .++++...+
T Consensus 293 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 -TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp -EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred -eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEEC
Confidence 222222 3334332 235668888886631 12222222 235778888865 688888888
Q ss_pred Ce--EEEEECCCCc-ceeE-EecccCCCCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCCeEE
Q 005325 208 GA--VECFDMRMRS-SAAR-INAVAPAGDADQEVTALEFDSNGGFLMGVGSS---TGKVLIYDLRSSYPI 270 (702)
Q Consensus 208 G~--V~iWD~~t~~-~v~~-l~~~~~~~~~~~~Vtslafspd~g~~LasGs~---DG~V~lwDlrs~~~l 270 (702)
+. |.++|+.++. .+.. +..+. ...|..+.++++++.++++.++ -+.|..+|+. ++..
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~-----~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPY-----QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCS-----TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred CEEEEEEEECCCCceEEEeccCCCC-----CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 75 6677776664 2333 43330 2457777777773445544443 3678888877 5443
No 364
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=76.15 E-value=76 Score=32.80 Aligned_cols=221 Identities=11% Similarity=0.035 Sum_probs=115.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecC-CceEEE-ecCC-----C--ccceEEecC---CCcEEEEe---cCCCEEEEEC
Q 005325 109 NFEVLADDYSKLAFLCADRSISLHAKY-GKHYSL-RIPR-----M--GRDMAYNSW---SCDLLCAA---SSPELYRINL 173 (702)
Q Consensus 109 ~~~~ls~dg~~Las~s~D~~I~iw~~~-g~~~~~-~i~~-----~--~~~l~~~~~---s~~llv~s---~d~~V~vwdl 173 (702)
..+.+.+|+..+++-...+.|.+++.. +....+ .++. . ...|++++. +..|+++. ..+.|.+|.+
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~ 114 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLY 114 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEB
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEe
Confidence 345566788866665558889888765 443222 2221 1 126777774 45576653 3556888876
Q ss_pred CCC----------eEE-EEee-cCCCCeEEEEEcCCCCEEEEEEc-------------CCeEEEEECCCCc-------ce
Q 005325 174 EQG----------RFL-SSLN-TQSPALNVVSRSKLHGLIACGGE-------------DGAVECFDMRMRS-------SA 221 (702)
Q Consensus 174 ~~g----------~~~-~~l~-~h~~~V~~l~~sp~~~llasgs~-------------DG~V~iWD~~t~~-------~v 221 (702)
..+ +.+ ..+. ........|.|.|++.++++.+. .|.|.-.++...- ..
T Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~ 194 (347)
T 3das_A 115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS 194 (347)
T ss_dssp CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC
T ss_pred CCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC
Confidence 542 111 1121 11223567999999988887553 2444444443210 00
Q ss_pred eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCCe------------------EEEEeeccCCCCeE
Q 005325 222 ARINAVAPAGDADQEVTALEFDSNGGFLMGVGS-STGKVLIYDLRSSY------------------PIRVKDHMFDSPIV 282 (702)
Q Consensus 222 ~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs-~DG~V~lwDlrs~~------------------~l~~~~h~~~~~I~ 282 (702)
..+... -.....|+|+|+ |.++++=. .++.-.|.-+..+. |+....+. .....
T Consensus 195 ~i~a~G------~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~-~~ap~ 266 (347)
T 3das_A 195 PVYSYG------HRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD-EASPS 266 (347)
T ss_dssp CEEEBC------CSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT-TCCEE
T ss_pred eEEeeC------CCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC-CCCCc
Confidence 111111 134568999998 76655432 23322232222211 22222221 12456
Q ss_pred EEEEeeccCCCCCeEEEe-CCCEEEEEeCCCCc----eeEEecCCCCceeEEEEEcCCCEEEEEe
Q 005325 283 DIKWHQSINTERPKLITT-DNHIVRIWDPETGE----SMTSIEPTAGKINDVCVFKDSGLLLLAL 342 (702)
Q Consensus 283 sl~fsp~~~~~~~ll~ss-~Dg~V~IWd~~tg~----~l~~i~~h~~~I~~v~~~p~~~~l~~a~ 342 (702)
.|+|. .+.++.+. ..+.|....+..+. ....+......+.+|+..|++.++++..
T Consensus 267 G~~~~-----~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-----EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-----TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-----cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77776 34555554 34444444554332 2223333346899999999987666544
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.34 E-value=1.2e+02 Score=34.67 Aligned_cols=235 Identities=11% Similarity=0.054 Sum_probs=114.6
Q ss_pred eeEEE-ECCCCCEEEEEEecCC----cEEEEEcCCceEEEeeecCCce----------EEEEEEcCCCCEEEEE------
Q 005325 65 TTKIR-ETPDGEFLIVSGIYPP----QVKVYELRQLSLKFERHLDSEI----------INFEVLADDYSKLAFL------ 123 (702)
Q Consensus 65 v~~i~-~SpDG~~llatGs~dg----~I~vwdl~~~~~~~~~h~~~~v----------v~~~~ls~dg~~Las~------ 123 (702)
...+. ++||+++++++-+..| .|+++|+.+....-. ...... ..+.|+..+ ..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-CcccccccccccccccceeeEECCC-EEEEEeCCCCCC
Confidence 34444 8999999766655544 599999988543211 111000 122455333 333321
Q ss_pred ----ECCCeEEEEecCCc----eEEEecCCCcc--ceEEecCCCc----EEEEec----CCCEEEEECCC--CeEEEEee
Q 005325 124 ----CADRSISLHAKYGK----HYSLRIPRMGR--DMAYNSWSCD----LLCAAS----SPELYRINLEQ--GRFLSSLN 183 (702)
Q Consensus 124 ----s~D~~I~iw~~~g~----~~~~~i~~~~~--~l~~~~~s~~----llv~s~----d~~V~vwdl~~--g~~~~~l~ 183 (702)
..-..|+.|..... ...+..+.... .......... +++... .+.+++.++.. +.... +.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK-IN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE-CC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE-ee
Confidence 11356888876631 11222222211 1111222221 233322 24577777653 44332 32
Q ss_pred cCCCCeEEEEEcCCCCEEEEE----------EcCCeEEEEECCCCc-------ceeEEecccCCCCCCCCeEEEEEcCCC
Q 005325 184 TQSPALNVVSRSKLHGLIACG----------GEDGAVECFDMRMRS-------SAARINAVAPAGDADQEVTALEFDSNG 246 (702)
Q Consensus 184 ~h~~~V~~l~~sp~~~llasg----------s~DG~V~iWD~~t~~-------~v~~l~~~~~~~~~~~~Vtslafspd~ 246 (702)
..... .+..+..+.+++.. ...+.|.+.|+.+.. ....+-.+ .....+..+.|..+
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP----TANEVFNFISTTKD- 360 (711)
T ss_dssp SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC----CTTEEEEEEEECSS-
T ss_pred cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC----CCCCeEEEEEEECC-
Confidence 22221 12233455454432 246778899887642 22332222 12457888999865
Q ss_pred CCEEEEEeCCCe--EEEEEcCCCe--EEEEeeccCCCCeEEEEEeeccCCCCCeEEEe----CCCEEEEEeCCCCc
Q 005325 247 GFLMGVGSSTGK--VLIYDLRSSY--PIRVKDHMFDSPIVDIKWHQSINTERPKLITT----DNHIVRIWDPETGE 314 (702)
Q Consensus 247 g~~LasGs~DG~--V~lwDlrs~~--~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss----~Dg~V~IWd~~tg~ 314 (702)
.++++...++. |.++|+.++. ...+........|..+.+.+ ++..++++. .-..+..+|+. ++
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~---~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYE---EEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCT---TCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecC---cCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 56777777775 6677776664 11112121123455555554 344455432 25778888876 44
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.86 E-value=82 Score=32.57 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=85.9
Q ss_pred ceEEecCC-CcEEEEecCCCEEEEECCCCeEEEEeec-----C--------CCCeEEEEEcCCC-CEEEEEEcCCeEEEE
Q 005325 149 DMAYNSWS-CDLLCAASSPELYRINLEQGRFLSSLNT-----Q--------SPALNVVSRSKLH-GLIACGGEDGAVECF 213 (702)
Q Consensus 149 ~l~~~~~s-~~llv~s~d~~V~vwdl~~g~~~~~l~~-----h--------~~~V~~l~~sp~~-~llasgs~DG~V~iW 213 (702)
+|.+.+.. ..++++...+.|++.+-. |+....+.. + ...+.+|.++|.. ..|.+++..+ |...
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 55555543 447777766667665322 221121111 0 1248899999863 5666666544 4444
Q ss_pred ECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeC-----------CCeEEEEEcCC-CeEEE-Eee-ccCC-
Q 005325 214 DMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSS-----------TGKVLIYDLRS-SYPIR-VKD-HMFD- 278 (702)
Q Consensus 214 D~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~-----------DG~V~lwDlrs-~~~l~-~~~-h~~~- 278 (702)
+-. +..-..+....+ ......+.+|+++|.+...|.+++. ++...||.... ++... +.. ....
T Consensus 259 ~D~-G~tW~~~~~~l~-~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~ 336 (394)
T 3b7f_A 259 DRR-EGVWKRIGDAMP-REVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQ 336 (394)
T ss_dssp ETT-TTEEECGGGGSC-TTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSS
T ss_pred CCC-CCcceECCCCCC-CCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCcc
Confidence 322 222222211100 0001346788998743455555542 33345665554 22221 111 1000
Q ss_pred ----CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCceeEEEEE
Q 005325 279 ----SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKINDVCVF 332 (702)
Q Consensus 279 ----~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I~~v~~~ 332 (702)
.-...|+++| .+...+++++..+.|.+ ..+.|+....+..+-..|.+|.|.
T Consensus 337 ~~~~~~~~~~~~~p--~~~~~l~~g~~~g~l~~-S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 337 AWLTVKRQAMTADA--HAPVGVYFGTTGGEIWA-SADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CCCCCCTBSEEECC--SSSCCEEEECTTSCEEE-ESSTTSBCEEEECSCSCEEEEEEE
T ss_pred ccceEEEEEEEECC--CCCCEEEEEeCCCeEEE-ECCCCCCceEcccCCCCeeEEEEe
Confidence 0123577877 22345666665555432 334566676666544567777654
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=73.58 E-value=90 Score=32.45 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=104.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecC--C---------ceEEEecCCCc--cceEEecCCCcEEEEecCCCEEEEECC
Q 005325 108 INFEVLADDYSKLAFLCADRSISLHAKY--G---------KHYSLRIPRMG--RDMAYNSWSCDLLCAASSPELYRINLE 174 (702)
Q Consensus 108 v~~~~ls~dg~~Las~s~D~~I~iw~~~--g---------~~~~~~i~~~~--~~l~~~~~s~~llv~s~d~~V~vwdl~ 174 (702)
+..+.++......+....|+.|..|-.. | ......++... ..+....-....++...++.||.|-..
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCC
Confidence 4455566666788888999999999432 1 11112222111 122222333345667788999999542
Q ss_pred C-Ce--------EEEE--eec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce-------eEEecccCCCCCCC
Q 005325 175 Q-GR--------FLSS--LNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA-------ARINAVAPAGDADQ 235 (702)
Q Consensus 175 ~-g~--------~~~~--l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v-------~~l~~~~~~~~~~~ 235 (702)
. |+ ...+ +.. ....|..++........++-..||.|..|-....-.+ ........ .....
T Consensus 187 ~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~-~~~~~ 265 (389)
T 3kci_A 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID-SLTGL 265 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG-GGTTS
T ss_pred CCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec-ccCCC
Confidence 2 11 1111 111 2234666666543345566678999999965421110 01111000 00123
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC------------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCC
Q 005325 236 EVTALEFDSNGGFLMGVGSSTGKVLIYDLRS------------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNH 303 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~DG~V~lwDlrs------------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg 303 (702)
.|..|+.. ..+.++-+.+|.|..|=... ..|..+... .+..|..|+-. ..+.++...++
T Consensus 266 ~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l-~~~~v~~ia~G-----~~h~~al~~~G 336 (389)
T 3kci_A 266 GVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKKVIAIATG-----SLHCVCCTEDG 336 (389)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG-TTCCEEEEEEC-----SSEEEEEETTC
T ss_pred cEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccC-CCCCEEEEEec-----cCeEEEECCCC
Confidence 57777765 33555558899999996532 112222222 23467777654 44566667889
Q ss_pred EEEEEeCCC
Q 005325 304 IVRIWDPET 312 (702)
Q Consensus 304 ~V~IWd~~t 312 (702)
.|..|-...
T Consensus 337 ~v~~wG~n~ 345 (389)
T 3kci_A 337 EVYTWGDND 345 (389)
T ss_dssp CEEEEECCT
T ss_pred CEEEeeCCC
Confidence 999998764
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.96 E-value=1.6e+02 Score=34.94 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD 274 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~ 274 (702)
..|.+++..++ ..++++-+.|++++||++.++.++...+
T Consensus 236 ~~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45677788877 7899999999999999999999887544
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.47 E-value=1.1e+02 Score=32.94 Aligned_cols=253 Identities=12% Similarity=0.068 Sum_probs=118.3
Q ss_pred EEEcCCCC-EEEEEECCCeEEEEecCCceE---EEecCC-----------Cc-cceEEecC---CCcEEEEecC------
Q 005325 111 EVLADDYS-KLAFLCADRSISLHAKYGKHY---SLRIPR-----------MG-RDMAYNSW---SCDLLCAASS------ 165 (702)
Q Consensus 111 ~~ls~dg~-~Las~s~D~~I~iw~~~g~~~---~~~i~~-----------~~-~~l~~~~~---s~~llv~s~d------ 165 (702)
+.+.||+. .|+++...+.|++++..+... ...++. .+ ..|++++. +..|++..+.
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~ 98 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWA 98 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSC
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcc
Confidence 34556775 455667789999987654311 111221 11 15777764 3446555331
Q ss_pred -------CCEEEEECCC----------CeEEEEee--cCCCCeEEEEEcCCCCEEEEEEcCCe-----------------
Q 005325 166 -------PELYRINLEQ----------GRFLSSLN--TQSPALNVVSRSKLHGLIACGGEDGA----------------- 209 (702)
Q Consensus 166 -------~~V~vwdl~~----------g~~~~~l~--~h~~~V~~l~~sp~~~llasgs~DG~----------------- 209 (702)
..|.+|.+.. .+.+..+. ........|+|.|++.++++.+..+.
T Consensus 99 ~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~Gk 178 (463)
T 2wg3_C 99 IGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGS 178 (463)
T ss_dssp SSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTE
T ss_pred cCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCee
Confidence 2466676542 22333332 12234688999999988887765432
Q ss_pred EEEEECCCCc--ceeEEecccCCCC---CC--------CCeEEEEEcCCCC----C-EEEEEeCCC----eEEEEEcCCC
Q 005325 210 VECFDMRMRS--SAARINAVAPAGD---AD--------QEVTALEFDSNGG----F-LMGVGSSTG----KVLIYDLRSS 267 (702)
Q Consensus 210 V~iWD~~t~~--~v~~l~~~~~~~~---~~--------~~Vtslafspd~g----~-~LasGs~DG----~V~lwDlrs~ 267 (702)
|.-.|+.... .-..+....+... .. .....++|+|..+ . .+.++...| .-.|..+..+
T Consensus 179 IlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G 258 (463)
T 2wg3_C 179 VLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKG 258 (463)
T ss_dssp EEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC--
T ss_pred EEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccC
Confidence 2222322210 0000000000000 01 2345689998623 2 454443212 1234444332
Q ss_pred ------eEEEEeeccCCCCeEEEEEeecc---CCCCCeEEEeCCCEEEEEeCCCCc-e--eEEe---------cCCCCce
Q 005325 268 ------YPIRVKDHMFDSPIVDIKWHQSI---NTERPKLITTDNHIVRIWDPETGE-S--MTSI---------EPTAGKI 326 (702)
Q Consensus 268 ------~~l~~~~h~~~~~I~sl~fsp~~---~~~~~ll~ss~Dg~V~IWd~~tg~-~--l~~i---------~~h~~~I 326 (702)
.|+....|..+..+..+.|.... .-.+.++++.-.+.|....+.... . ...+ ......+
T Consensus 259 ~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~ 338 (463)
T 2wg3_C 259 KDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHI 338 (463)
T ss_dssp --CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEE
T ss_pred CCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcc
Confidence 24544444222567888875310 012345666544555544544321 1 1111 1113578
Q ss_pred eEEEEEcCCCEEEEEe-------CCCcEEEEEcCCCCCCCCccC
Q 005325 327 NDVCVFKDSGLLLLAL-------DCSQIPSYFIPDLGPTPKWCS 363 (702)
Q Consensus 327 ~~v~~~p~~~~l~~a~-------~d~~I~~~~ip~lg~ap~Wcs 363 (702)
.+|.+.|++.++++.. .++.|.-..-|.-...|.-|.
T Consensus 339 ~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~~~~~p~~C~ 382 (463)
T 2wg3_C 339 LGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECR 382 (463)
T ss_dssp EEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTTSCSSCGGGC
T ss_pred eEEEECCCCCEEEEeccCCcccCCCCcEEEecCcccccccccCC
Confidence 9999999998777765 345554444355444454443
No 370
>4h1k_B Nuclear polyadenylated RNA-binding protein NAB2; heat repeats, nuclear import, protein transport, importin, transportin; 3.04A {Saccharomyces cerevisiae}
Probab=67.82 E-value=3.8 Score=27.55 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=5.0
Q ss_pred CCCCCCCCCCC
Q 005325 685 GGRGRGGYRGR 695 (702)
Q Consensus 685 ~~~~~~~~~~~ 695 (702)
|||||||.||+
T Consensus 14 ~RGgRgg~rg~ 24 (38)
T 4h1k_B 14 RRGGRGGNRGG 24 (38)
T ss_pred CcCCccccccc
Confidence 44445544443
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.00 E-value=1.3e+02 Score=31.08 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=118.0
Q ss_pred CCEEEEEECCCeEEEEecC--Cc---------eEEEecCCCcc----ceEEecCCCcEEEEecCCCEEEEECCC-C----
Q 005325 117 YSKLAFLCADRSISLHAKY--GK---------HYSLRIPRMGR----DMAYNSWSCDLLCAASSPELYRINLEQ-G---- 176 (702)
Q Consensus 117 g~~Las~s~D~~I~iw~~~--g~---------~~~~~i~~~~~----~l~~~~~s~~llv~s~d~~V~vwdl~~-g---- 176 (702)
....+....|+.|..|-.. |. .....++.... .+....-....++...++.||.|-... |
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 3667778889999999432 11 11222221111 123333344467778899999994321 1
Q ss_pred ----eEEE--Eeec-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcc------eeEEecccCCCCCCCCeEEEEEc
Q 005325 177 ----RFLS--SLNT-QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSS------AARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 177 ----~~~~--~l~~-h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~------v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.... .+.. ....|..|+.... ..+.-+.+|.|..|-....-. ...+............|..|+..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~--hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGA--HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcC--eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1111 1111 1124666665543 344456789999997543110 00110000000113457777765
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC------------CeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 244 SNGGFLMGVGSSTGKVLIYDLRS------------SYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 244 pd~g~~LasGs~DG~V~lwDlrs------------~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
.. ..+.++-+.+|.|..|-... ..|..+... ....|..|+.- ..+.++-..++.|..|-..
T Consensus 220 ~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~v~~G-----~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 220 SG-DAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGVVKVECG-----SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CS-SCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG-TTSCEEEEEEE-----TTEEEEEETTSCEEEEECC
T ss_pred CC-CcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc-CCCcEEEEeCC-----CCEEEEEeCCCeEEEEeCC
Confidence 42 35666668999999996432 112222222 23457777765 4456666789999999875
Q ss_pred C-Cce----------eEEecC-CCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 312 T-GES----------MTSIEP-TAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 312 t-g~~----------l~~i~~-h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
. |++ ...+.. ....|..|+. .....++..+++.|+.|=...
T Consensus 293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 3 111 111221 1224555543 334456668888999986543
No 372
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.21 E-value=1.4e+02 Score=31.22 Aligned_cols=143 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred eEEEEECCCC--cceeEEecccCCCCCCCCeEEEEEc---CC----CCCEEEEEeCCCeEEEEEcCCCeEEEEeecc---
Q 005325 209 AVECFDMRMR--SSAARINAVAPAGDADQEVTALEFD---SN----GGFLMGVGSSTGKVLIYDLRSSYPIRVKDHM--- 276 (702)
Q Consensus 209 ~V~iWD~~t~--~~v~~l~~~~~~~~~~~~Vtslafs---pd----~g~~LasGs~DG~V~lwDlrs~~~l~~~~h~--- 276 (702)
.|.+||+.+. +.+.++..+.........+..|.+. |. ++...++=+..+-|.|||+.+++...+..+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Q ss_pred --------------CCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC--------CceeEEecCCC--CceeEEEEE
Q 005325 277 --------------FDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET--------GESMTSIEPTA--GKINDVCVF 332 (702)
Q Consensus 277 --------------~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t--------g~~l~~i~~h~--~~I~~v~~~ 332 (702)
....|..|+.+|...+++..|.=+.=..-++|.+.| ...+..+-... +.-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Q ss_pred -cCCCEEEEEeCCCcEEEEE
Q 005325 333 -KDSGLLLLALDCSQIPSYF 351 (702)
Q Consensus 333 -p~~~~l~~a~~d~~I~~~~ 351 (702)
.++.++++--+...|..|.
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~ 303 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWN 303 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEE
T ss_pred CCCCeEEEEeccCCeEEEEe
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.60 E-value=83 Score=34.95 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCCEEEEEEc------------CCeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 187 PALNVVSRSKLHGLIACGGE------------DGAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 187 ~~V~~l~~sp~~~llasgs~------------DG~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
...+.|.|.++|.+.++... ...|..++..+++....+..+. ...++.++|+|| +..|.+.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-----~aEpnGiafSPD-~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-----GCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-----TCEEEEEEECTT-SSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-----CccccCCEECCC-CCEEEEE
Confidence 35678999999987774221 1267788887777655554431 367899999999 8877765
No 374
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=63.38 E-value=1.5e+02 Score=31.02 Aligned_cols=180 Identities=11% Similarity=0.055 Sum_probs=96.5
Q ss_pred CCCEEEEEECCCeEEEEec--C--Cc---------eEEEecCCCccceEEecCCCcEEEEecCCCEEEEECCC-Ce----
Q 005325 116 DYSKLAFLCADRSISLHAK--Y--GK---------HYSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINLEQ-GR---- 177 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~--~--g~---------~~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl~~-g~---- 177 (702)
.....+....|+.|..|-. . |. ...+.++.....+....-....++...++.||.|-... |+
T Consensus 135 G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~ 214 (423)
T 3mvd_K 135 GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214 (423)
T ss_dssp CSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSC
T ss_pred CcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCC
Confidence 3367777888999999964 2 21 11222222222223333334466777889999995321 11
Q ss_pred ------------------EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce-----------eEEeccc
Q 005325 178 ------------------FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA-----------ARINAVA 228 (702)
Q Consensus 178 ------------------~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v-----------~~l~~~~ 228 (702)
+..........|..|+....+ .++.-+.+|.|..|-......+ .-....
T Consensus 215 ~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~- 292 (423)
T 3mvd_K 215 SERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE- 292 (423)
T ss_dssp CTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-
T ss_pred cccccccccccccccccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-
Confidence 111111112345566554332 3333357899999965431111 011111
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC-------------eEEEEeeccCCCCeEEEEEeeccCCCCC
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS-------------YPIRVKDHMFDSPIVDIKWHQSINTERP 295 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~-------------~~l~~~~h~~~~~I~sl~fsp~~~~~~~ 295 (702)
...|..|+.. ..+.++-+.+|.|..|=.... .|..+... ...|..|+-. ..+
T Consensus 293 -----~~~v~~ia~G---~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l--~~~v~~ia~G-----~~h 357 (423)
T 3mvd_K 293 -----LKDIRHIAGG---QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL--TEKIVSVGCG-----EVC 357 (423)
T ss_dssp -----CCSEEEEEEC---SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC--CSCEEEEEEE-----TTE
T ss_pred -----CCCeEEEEcc---cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC--CCCEEEEEcC-----CCe
Confidence 2467777764 445566688999999964320 12222222 2267777765 445
Q ss_pred eEEEeCCCEEEEEeCCC
Q 005325 296 KLITTDNHIVRIWDPET 312 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~t 312 (702)
.++-..++.|..|-...
T Consensus 358 s~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 358 SYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTSCEEEEECCT
T ss_pred EEEEcCCCCEEEECCCC
Confidence 56667899999998764
No 375
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.34 E-value=1.4e+02 Score=30.41 Aligned_cols=156 Identities=10% Similarity=0.014 Sum_probs=91.8
Q ss_pred CCceEEEEEEcC--CCCEEEEEECCCeEEEEecCC---c----eEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEE
Q 005325 104 DSEIINFEVLAD--DYSKLAFLCADRSISLHAKYG---K----HYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRIN 172 (702)
Q Consensus 104 ~~~vv~~~~ls~--dg~~Las~s~D~~I~iw~~~g---~----~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwd 172 (702)
+..|+.++.+.+ +..++++++.+|.|+--.... . ...+.+..... .+.......++++.+..|.++++.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 556777777764 468999999999999875431 1 11122222222 233334445689999999999987
Q ss_pred CC--CCe---------EEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------cceeEEecccCCCCCC
Q 005325 173 LE--QGR---------FLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR-------SSAARINAVAPAGDAD 234 (702)
Q Consensus 173 l~--~g~---------~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~-------~~v~~l~~~~~~~~~~ 234 (702)
.. .-. ..-.+. ....|.++...+.+..|+..+..|.++.-.+... .-+..+... ...
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~----~~~ 248 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD----RRR 248 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC----TTT
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec----CCC
Confidence 76 221 111121 2235666666566678889999999988875421 112222211 102
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
..+-.+....+ ...++..+.+|.+.-+++.
T Consensus 249 d~lv~~~~~~~-~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 249 GRLVGALIVDD-DSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CSEEEEEEECT-TCEEEEEEGGGCEEEEEGG
T ss_pred CeEEEEEEeCC-CccEEEEcCCCeEEEEehh
Confidence 34444444434 4677777888888878764
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.86 E-value=81 Score=35.22 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=41.8
Q ss_pred eEEEEEcCCCCEEEEEEcC------------CeEEEEECCCCcceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 189 LNVVSRSKLHGLIACGGED------------GAVECFDMRMRSSAARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 189 V~~l~~sp~~~llasgs~D------------G~V~iWD~~t~~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
.--|+|+|.+.++++-..+ ..+.+.++.+++....+..+. ...++.++|+|| +..|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-----gaE~TG~~fspD-g~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-----GCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-----TCEEEEEEECTT-SSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-----CccCcCeeECCC-CCEEEEE
Confidence 4568899999876654322 245666777777666666552 589999999999 8877764
No 377
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=60.73 E-value=14 Score=40.91 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCEEEEEEc-CCeEEEEECCCC------cc-------eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEE
Q 005325 188 ALNVVSRSKLHGLIACGGE-DGAVECFDMRMR------SS-------AARINAVAPAGDADQEVTALEFDSNGGFLMGVG 253 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~-DG~V~iWD~~t~------~~-------v~~l~~~~~~~~~~~~Vtslafspd~g~~LasG 253 (702)
....|.++|+|.++++++. +.+|.++|+..- +. +..... .......+|+++ |....+-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-------GlGPlHt~Fd~~-G~aYTtl 395 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-------GLGPLHTTFDGR-GNAYTTL 395 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-------CSCEEEEEECSS-SEEEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-------CCcccEEEECCC-CceEeee
Confidence 3456889999987776665 889999998841 11 122222 367789999999 8666677
Q ss_pred eCCCeEEEEEcCC
Q 005325 254 SSTGKVLIYDLRS 266 (702)
Q Consensus 254 s~DG~V~lwDlrs 266 (702)
..|.+|.-|++..
T Consensus 396 fidSqvvkWni~~ 408 (638)
T 3sbq_A 396 FIDSQVVKWNMEE 408 (638)
T ss_dssp TTTTEEEEEEHHH
T ss_pred eecceEEEEeccH
Confidence 7899999999964
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.57 E-value=1.6e+02 Score=30.55 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=129.3
Q ss_pred CCCCEEEEEECCCeEEEEecC--------C-ceEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECC---------
Q 005325 115 DDYSKLAFLCADRSISLHAKY--------G-KHYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLE--------- 174 (702)
Q Consensus 115 ~dg~~Las~s~D~~I~iw~~~--------g-~~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~--------- 174 (702)
++...+++++.+|.|+=-.+. | ....+.+..... .+........+++.+..|.+|.+...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 455788889999998854221 1 112222222211 33334444558888888988887532
Q ss_pred CCeEEEE---eecCCCCeEEEE-EcC--CCCEEEEEEcCCeEEEEECCCCcc-----eeEEecccCCCCCCCCeEEEEEc
Q 005325 175 QGRFLSS---LNTQSPALNVVS-RSK--LHGLIACGGEDGAVECFDMRMRSS-----AARINAVAPAGDADQEVTALEFD 243 (702)
Q Consensus 175 ~g~~~~~---l~~h~~~V~~l~-~sp--~~~llasgs~DG~V~iWD~~t~~~-----v~~l~~~~~~~~~~~~Vtslafs 243 (702)
.|..+.. +.. ...|.++. +.. ...+|+.++..|.++...+..... +..+... ....+-.+...
T Consensus 85 ~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-----~~d~lv~v~~~ 158 (370)
T 3l6v_A 85 RGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-----EGDALVGVALT 158 (370)
T ss_dssp CCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-----TTCCEEEEEEE
T ss_pred CCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-----CCCEEEEEEEe
Confidence 2332221 222 23455444 332 346899999999999888653221 1111111 13455555555
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCC-------eEEEEeeccCCCCeEEEEEeecc--------------------------
Q 005325 244 SNGGFLMGVGSSTGKVLIYDLRSS-------YPIRVKDHMFDSPIVDIKWHQSI-------------------------- 290 (702)
Q Consensus 244 pd~g~~LasGs~DG~V~lwDlrs~-------~~l~~~~h~~~~~I~sl~fsp~~-------------------------- 290 (702)
.. ...|+..+..|.+..+....- .=+.......+..|.++...+..
T Consensus 159 ~~-~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 159 DG-DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CS-CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------------------
T ss_pred CC-CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 44 568888899999988876421 11111111124556666554310
Q ss_pred ------CCCCCeEEEeCCCEEEEEeCCC-------CceeEEec--CCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCCC
Q 005325 291 ------NTERPKLITTDNHIVRIWDPET-------GESMTSIE--PTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPDL 355 (702)
Q Consensus 291 ------~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~--~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~l 355 (702)
..+..+++.+..|..+...+.. ++-+..+. ...+.+-.+.+..+...+++.+..+.+.-+.+..+
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i 317 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEI 317 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGS
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhC
Confidence 0234677888889888877642 22222222 22345666555556667888888888887776554
Q ss_pred C
Q 005325 356 G 356 (702)
Q Consensus 356 g 356 (702)
.
T Consensus 318 ~ 318 (370)
T 3l6v_A 318 S 318 (370)
T ss_dssp C
T ss_pred C
Confidence 3
No 379
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=60.17 E-value=1e+02 Score=30.31 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=85.5
Q ss_pred EEEEEEcCCeEEEEECCCCcc-eeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE---c---CC-CeEEE
Q 005325 200 LIACGGEDGAVECFDMRMRSS-AARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYD---L---RS-SYPIR 271 (702)
Q Consensus 200 llasgs~DG~V~iWD~~t~~~-v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwD---l---rs-~~~l~ 271 (702)
.+++.+.+|.|+--....... ...+.. ...+..+..... ...|+..+..|.++-+. + +. +.++.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-------~D~l~~~~~~~t-~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~ 75 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-------GDSFKAAVKGKS-NQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 75 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-------TCCEEEEEEEET-TSCEEEEETTSEEEEECGGGSCCSSSCCEEGG
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-------CCEEEEEEEeCC-CCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee
Confidence 456667778877655433110 011111 245555544444 56677778999876654 4 21 33322
Q ss_pred -EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-------CceeEEecCCCCceeEEEEE-cCCCEEEEEe
Q 005325 272 -VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-------GESMTSIEPTAGKINDVCVF-KDSGLLLLAL 342 (702)
Q Consensus 272 -~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~~-p~~~~l~~a~ 342 (702)
......+..|.++.... ++.++++.+..|.++...+.. |.....+.. ...+-.+... .....|++.+
T Consensus 76 ~~i~L~~~e~Iv~~~~~~---~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T 151 (256)
T 1zvt_A 76 GKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAIT 151 (256)
T ss_dssp GTCCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEE
T ss_pred eeecCCCCCEEEEEEEeC---CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEc
Confidence 11111245677774432 355688889999999988742 334444443 4456555555 3556799999
Q ss_pred CCCcEEEEEcCCCCCC
Q 005325 343 DCSQIPSYFIPDLGPT 358 (702)
Q Consensus 343 ~d~~I~~~~ip~lg~a 358 (702)
..+.+..|.+..+.+.
T Consensus 152 ~~G~~lrf~~~ei~~~ 167 (256)
T 1zvt_A 152 QAGRMLMFPVSDLPQL 167 (256)
T ss_dssp TTSEEEEEEGGGSCBC
T ss_pred CCCeEEEEEHHHCCCc
Confidence 9999999987665443
No 380
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=57.37 E-value=2.2 Score=42.54 Aligned_cols=7 Identities=14% Similarity=-0.054 Sum_probs=0.0
Q ss_pred eEEEEec
Q 005325 642 EISFITR 648 (702)
Q Consensus 642 ~~~f~~~ 648 (702)
|+.|.+.
T Consensus 185 E~fi~~t 191 (273)
T 3u5c_h 185 EAYVPAT 191 (273)
T ss_dssp -------
T ss_pred hhhcccc
Confidence 3334343
No 381
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=54.54 E-value=1.7e+02 Score=31.43 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCC-EEEEEEcCCeEEEEECCCC---cceeEEecccCC---CCCCCCeEEEEEcCC---CCCEEEEEeC-
Q 005325 187 PALNVVSRSKLHG-LIACGGEDGAVECFDMRMR---SSAARINAVAPA---GDADQEVTALEFDSN---GGFLMGVGSS- 255 (702)
Q Consensus 187 ~~V~~l~~sp~~~-llasgs~DG~V~iWD~~t~---~~v~~l~~~~~~---~~~~~~Vtslafspd---~g~~LasGs~- 255 (702)
.....|+|.|++. .|+++...|.|++++.... ..+..+...... ......+..|+|+|+ ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999985 3444567899999976432 122222211000 011357889999985 2444443332
Q ss_pred -C----------CeEEEEEcCC----------CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEe
Q 005325 256 -T----------GKVLIYDLRS----------SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITT 300 (702)
Q Consensus 256 -D----------G~V~lwDlrs----------~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss 300 (702)
+ ..|.-|.+.. .+.+. +...........|+|.| +++|.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp----DG~LYv~~ 156 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP----DGFLYIIL 156 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT----TSCEEEEE
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC----CCcEEEEe
Confidence 1 1344465532 12232 22111123568999998 55666654
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.56 E-value=38 Score=41.22 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.+.+++..++..++++-+.|+++++|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556667778889999999999999999999999988765
No 383
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=51.31 E-value=6.4 Score=23.14 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCC
Q 005325 682 QGRGGRGRGGYRGR 695 (702)
Q Consensus 682 ~~~~~~~~~~~~~~ 695 (702)
.|||.||.|=|.||
T Consensus 2 sgrgkggkglgkgg 15 (26)
T 4gqb_C 2 SGRGKGGKGLGKGG 15 (26)
T ss_pred CCCCcCCcccCccc
Confidence 46666666644555
No 384
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.77 E-value=1.1e+02 Score=37.18 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEee
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKD 274 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~ 274 (702)
..+.+++..++ ..++++-+.|++++||++.++.++...+
T Consensus 238 ~~~vs~~~~~~-~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETT-TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCC-ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34555666677 7899999999999999999999887544
No 385
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=44.44 E-value=1.4e+02 Score=25.02 Aligned_cols=61 Identities=8% Similarity=-0.098 Sum_probs=30.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC
Q 005325 247 GFLMGVGSSTGKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 247 g~~LasGs~DG~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t 312 (702)
+.+.+.-..||.+.||+...+.+++.........-..+.+. +++.+++-..++.+ ||...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~----~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLG----HSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEEC----TTSCEEEECTTSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEe----CCCcEEEECCCCCE-EEECCC
Confidence 45555556777777777544455553322111122345554 35556655444443 676543
No 386
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.68 E-value=3.6e+02 Score=26.95 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=101.1
Q ss_pred CCCCEEEEEEecCCcEEEEEcCCceEE---------EeeecCCceEEEEEEcCCCCEEEEEECCCeEEEEecCC------
Q 005325 72 PDGEFLIVSGIYPPQVKVYELRQLSLK---------FERHLDSEIINFEVLADDYSKLAFLCADRSISLHAKYG------ 136 (702)
Q Consensus 72 pDG~~llatGs~dg~I~vwdl~~~~~~---------~~~h~~~~vv~~~~ls~dg~~Las~s~D~~I~iw~~~g------ 136 (702)
|+..+ +++.+.+|.|+-..+...... +.-..+..++.+...+.. ..++..+..|.+.-...+.
T Consensus 6 ~~e~~-~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENI-VVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEE-EEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCE-EEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCc
Confidence 34455 677889999998877553210 011122334444444433 5666677777665543321
Q ss_pred ----ceE--EEecCCCcc--ceEEec---CCCcEEEEecCCCEEEEECCC-------CeEEEEeecCCCCeEEEEEcCCC
Q 005325 137 ----KHY--SLRIPRMGR--DMAYNS---WSCDLLCAASSPELYRINLEQ-------GRFLSSLNTQSPALNVVSRSKLH 198 (702)
Q Consensus 137 ----~~~--~~~i~~~~~--~l~~~~---~s~~llv~s~d~~V~vwdl~~-------g~~~~~l~~h~~~V~~l~~sp~~ 198 (702)
... .+.+..... .+.... ....+++++..|.++...+.. |.....+.. .+.+..+......
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 000 011111111 222221 234488899999999887632 222222333 3455555554445
Q ss_pred CEEEEEEcCCeEEEEECCC----C---cceeEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 005325 199 GLIACGGEDGAVECFDMRM----R---SSAARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLR 265 (702)
Q Consensus 199 ~llasgs~DG~V~iWD~~t----~---~~v~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlr 265 (702)
..++..+.+|.+..+.... + +-+..+... ....|.++..-++ +..|++.+..|.++...+.
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-----~~d~vv~~~~v~~-~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-----EGDLFVKVLSVKE-NPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-----TTCCEEEEEECTT-CSEEEEEETTSEEEEEEGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-----CCCEEEEEEEECC-CCeEEEEECCCceEEEEHH
Confidence 6788889999998887643 1 112222222 1356667666555 6778888999999998875
No 387
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.92 E-value=5.8e+02 Score=29.13 Aligned_cols=194 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred ceEEecCCCc-EEEEecCCCEEEEECCCCeEEEEeec------CCCCeEEEEEcCCC--CEEEEEEcCC----eEEEEEC
Q 005325 149 DMAYNSWSCD-LLCAASSPELYRINLEQGRFLSSLNT------QSPALNVVSRSKLH--GLIACGGEDG----AVECFDM 215 (702)
Q Consensus 149 ~l~~~~~s~~-llv~s~d~~V~vwdl~~g~~~~~l~~------h~~~V~~l~~sp~~--~llasgs~DG----~V~iWD~ 215 (702)
+|.+++.+.. +++++..+.|++.+-.-......... ....|.+|+++|.. .+++.++... ...+...
T Consensus 19 ~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~ 98 (789)
T 1sqj_A 19 GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSE 98 (789)
T ss_dssp EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEES
T ss_pred EEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEEC
Q ss_pred CCCcceeEEecccCCCCCCC---------CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-----cCCCCe
Q 005325 216 RMRSSAARINAVAPAGDADQ---------EVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIRVKDH-----MFDSPI 281 (702)
Q Consensus 216 ~t~~~v~~l~~~~~~~~~~~---------~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~~~~h-----~~~~~I 281 (702)
..++.-..+... .. .+.+|+++|.+...+.+++..+.|. .....++.-..... .....+
T Consensus 99 DgG~TW~~~~~~------~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 99 DRGQSFTIYESP------FPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp STTSEEEEEECS------SCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred CCCCcceeccCC------cccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Q ss_pred EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCCCCce------------------eEEEEEcCCCEEEEE--
Q 005325 282 VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPTAGKI------------------NDVCVFKDSGLLLLA-- 341 (702)
Q Consensus 282 ~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h~~~I------------------~~v~~~p~~~~l~~a-- 341 (702)
..|.++| .+...++++..+........+.|+....+..-.... .++++.|..+.|+++
T Consensus 172 ~~i~~~p--~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 249 (789)
T 1sqj_A 172 TSVIFDP--ERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYA 249 (789)
T ss_dssp EEEEECT--TSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEE
T ss_pred EEEEECC--CCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEe
Q ss_pred -------eCCCcEEEEE
Q 005325 342 -------LDCSQIPSYF 351 (702)
Q Consensus 342 -------~~d~~I~~~~ 351 (702)
+..+.|....
T Consensus 250 ~~~~p~~g~~g~l~~S~ 266 (789)
T 1sqj_A 250 DYPGPWGVTFGEVWRQN 266 (789)
T ss_dssp SSCSSSCCCCCCEEEEE
T ss_pred cCCCCCCCCCceEEEEe
No 388
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=33.58 E-value=4.6e+02 Score=27.77 Aligned_cols=186 Identities=6% Similarity=0.056 Sum_probs=94.0
Q ss_pred CCCEEEEEECCCeEEEEecC----Cc-----------eEEEecCCCcc-ceEE-ecCCCcEEEEecCCCEEEEECCC-Ce
Q 005325 116 DYSKLAFLCADRSISLHAKY----GK-----------HYSLRIPRMGR-DMAY-NSWSCDLLCAASSPELYRINLEQ-GR 177 (702)
Q Consensus 116 dg~~Las~s~D~~I~iw~~~----g~-----------~~~~~i~~~~~-~l~~-~~~s~~llv~s~d~~V~vwdl~~-g~ 177 (702)
.....+....++.|..|-.. |. .....++.... .+.. ..-....++...++.||.|-... ++
T Consensus 156 G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~Gq 235 (473)
T 3of7_A 156 TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQ 235 (473)
T ss_dssp CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCC
Confidence 33667778889999999541 11 11222322211 1222 22333466677889999995432 21
Q ss_pred E------------EEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce-----------eEEecccCCCCCC
Q 005325 178 F------------LSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA-----------ARINAVAPAGDAD 234 (702)
Q Consensus 178 ~------------~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v-----------~~l~~~~~~~~~~ 234 (702)
+ ..+.......|..|+.... ..+.-+.+|.|..|-....-.+ ........ ....
T Consensus 236 LG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~--hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~-~~~~ 312 (473)
T 3of7_A 236 LGRKVMERFRLKTLDPRPFGLRHVKYIASGEN--HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA-LPDN 312 (473)
T ss_dssp TSSCCCGGGTTTTCSCEECSCCSEEEEEECSS--EEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC-CCTT
T ss_pred CCCCccccccccccCceecCCcceEEEecCCC--eEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccc-ccCC
Confidence 1 0011111135666665543 3444467899999965431110 00111000 0112
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------------------CeE--EEEeeccCCC-CeEEEEEeeccC
Q 005325 235 QEVTALEFDSNGGFLMGVGSSTGKVLIYDLRS--------------------SYP--IRVKDHMFDS-PIVDIKWHQSIN 291 (702)
Q Consensus 235 ~~Vtslafspd~g~~LasGs~DG~V~lwDlrs--------------------~~~--l~~~~h~~~~-~I~sl~fsp~~~ 291 (702)
..|..|+.. ....++-+.+|.|..|-... +.+ ........+. .|..|+.-
T Consensus 313 ~~i~~ia~G---~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G---- 385 (473)
T 3of7_A 313 VVIRSIAAG---EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAG---- 385 (473)
T ss_dssp CCEEEEEEC---SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEEC----
T ss_pred ccEEEEEeC---CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeC----
Confidence 457777765 33445557899999996532 111 1111111111 56666653
Q ss_pred CCCCeEEEeCCCEEEEEeCCC
Q 005325 292 TERPKLITTDNHIVRIWDPET 312 (702)
Q Consensus 292 ~~~~ll~ss~Dg~V~IWd~~t 312 (702)
..+.++-..++.|..|-...
T Consensus 386 -~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 386 -SHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp -SSEEEEEETTSCEEEEECCT
T ss_pred -CCeEEEEeCCCcEEEeeCCC
Confidence 34556667789999998754
No 389
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=33.44 E-value=5.8e+02 Score=28.98 Aligned_cols=165 Identities=7% Similarity=-0.026 Sum_probs=80.5
Q ss_pred CCCCeEEEEEcCCC-CEEEEEEcCCeEEEEECCCCcceeEEeccc-----CCC-CCCCCeEEEEEcCCCCCEEEEEeCC-
Q 005325 185 QSPALNVVSRSKLH-GLIACGGEDGAVECFDMRMRSSAARINAVA-----PAG-DADQEVTALEFDSNGGFLMGVGSST- 256 (702)
Q Consensus 185 h~~~V~~l~~sp~~-~llasgs~DG~V~iWD~~t~~~v~~l~~~~-----~~~-~~~~~Vtslafspd~g~~LasGs~D- 256 (702)
-.+.|.+|+++|.. .++.+++..|.|...+-. ++.-..+.... ... .....|.+|+++|.+...|.++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~Dg-G~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAA-KWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCC-CCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 44589999999987 667777766766544322 22211111110 000 0135699999998434455444321
Q ss_pred ----CeEEEEE-cCCCe---EEEEeecc----CCCCe-EEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEecCC-
Q 005325 257 ----GKVLIYD-LRSSY---PIRVKDHM----FDSPI-VDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIEPT- 322 (702)
Q Consensus 257 ----G~V~lwD-lrs~~---~l~~~~h~----~~~~I-~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~~h- 322 (702)
....||- ...++ .+...... .+..+ ..|+++| .+.+.+++++..+.|. ...+.|+....+..-
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p--~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~ 174 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNP--HWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLP 174 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECT--TSTTCEEEECSSSCEE-EESSTTSSCEECTTSC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECC--CCCCEEEEEeCCCcEE-EECCCCcCccccccCc
Confidence 1133343 23333 22211000 01112 4688887 3345566665544332 233446655554421
Q ss_pred -----CCceeEEEEEcCC-CEEEEEeCCCcEEEEEcCC
Q 005325 323 -----AGKINDVCVFKDS-GLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 323 -----~~~I~~v~~~p~~-~~l~~a~~d~~I~~~~ip~ 354 (702)
...+..|++.|.. ..++++..++. .+|.-..
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g-~v~~S~D 211 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAVG-GLWVTWD 211 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESSTT-CEEEESS
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCCC-eEEEECC
Confidence 1347788888843 44666655543 3444333
No 390
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=33.42 E-value=4.6e+02 Score=27.75 Aligned_cols=143 Identities=15% Similarity=0.036 Sum_probs=75.8
Q ss_pred cEEEEecCCCEEEEEC---CCCeE----------EEEeec---CCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcce
Q 005325 158 DLLCAASSPELYRINL---EQGRF----------LSSLNT---QSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSA 221 (702)
Q Consensus 158 ~llv~s~d~~V~vwdl---~~g~~----------~~~l~~---h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v 221 (702)
..++...++.||.|-. ..|++ ..+... ....|..|+.... ..+.-+.+|.|..|-....-.+
T Consensus 159 hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~--hs~alt~~G~v~~wG~n~~GqL 236 (473)
T 3of7_A 159 MSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKD--HILFLDEEGMVFAWGNGQQNQL 236 (473)
T ss_dssp EEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSS--EEEEEETTSCEEEEECCTTSTT
T ss_pred EEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCC--eEEEEeCCCeEEEEeCCCCCCC
Confidence 3566678899999964 12221 111111 1123667766544 4444568899999976532211
Q ss_pred eEEecc-------cCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC------------e----EEEEeeccCC
Q 005325 222 ARINAV-------APAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS------------Y----PIRVKDHMFD 278 (702)
Q Consensus 222 ~~l~~~-------~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~------------~----~l~~~~h~~~ 278 (702)
..-... .+..-....|..|+.. ..+.++-+.+|.|..|-.... . |..+.. ..+
T Consensus 237 G~~~~~~~~~~~~~p~~~~~~~v~~Ia~G---~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~ 312 (473)
T 3of7_A 237 GRKVMERFRLKTLDPRPFGLRHVKYIASG---ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDN 312 (473)
T ss_dssp SSCCCGGGTTTTCSCEECSCCSEEEEEEC---SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTT
T ss_pred CCCccccccccccCceecCCcceEEEecC---CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc-cCC
Confidence 100000 0000001457777765 445566678999999965321 1 221211 123
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCC
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPE 311 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~ 311 (702)
..|..|+-. ..+.++-..++.|..|-..
T Consensus 313 ~~i~~ia~G-----~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 313 VVIRSIAAG-----EHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp CCEEEEEEC-----SSEEEEEETTSCEEEEEEC
T ss_pred ccEEEEEeC-----CCeEEEEeCCCeEEEEECC
Confidence 467777754 3445556678999999864
No 391
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=32.25 E-value=3.7e+02 Score=26.35 Aligned_cols=152 Identities=8% Similarity=0.012 Sum_probs=85.1
Q ss_pred CCceEEEEEEcC-CCCEEEEEECCCeEEEEecCCc------eEEEecCCCcc--ceEEecCCCcEEEEecCCCEEEEECC
Q 005325 104 DSEIINFEVLAD-DYSKLAFLCADRSISLHAKYGK------HYSLRIPRMGR--DMAYNSWSCDLLCAASSPELYRINLE 174 (702)
Q Consensus 104 ~~~vv~~~~ls~-dg~~Las~s~D~~I~iw~~~g~------~~~~~i~~~~~--~l~~~~~s~~llv~s~d~~V~vwdl~ 174 (702)
+..++.+.. .. +...+++++.+|.|+-...... ...+.+..... .+.......++++.+..|.++.++..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 455666655 42 4578999999999988754321 11111221111 22223334458999999999988653
Q ss_pred C---------CeEEEEeecCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------cceeEEecccCCCCCCCCeE
Q 005325 175 Q---------GRFLSSLNTQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMR-------SSAARINAVAPAGDADQEVT 238 (702)
Q Consensus 175 ~---------g~~~~~l~~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~-------~~v~~l~~~~~~~~~~~~Vt 238 (702)
. |...-.+... ..|..+...+.+..++..+..|.++...+..- +-+..+ .. ...+.
T Consensus 146 eip~~gR~a~Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~------~~~lv 217 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GT------KDTLV 217 (276)
T ss_dssp GSCBCCTTCCCEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CS------SSCEE
T ss_pred hCCCcCCCCCCEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cC------CCcEE
Confidence 2 2221122222 35655555555668888899999998876421 112222 11 23444
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEE--EEcC
Q 005325 239 ALEFDSNGGFLMGVGSSTGKVLI--YDLR 265 (702)
Q Consensus 239 slafspd~g~~LasGs~DG~V~l--wDlr 265 (702)
.+..... ...++..+.+|.+.. +++.
T Consensus 218 ~~~~~~~-~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 218 DLIPIKE-EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEESS-EEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCC-CCEEEEEcCCCeEEEeeeCHH
Confidence 4433333 456677777887777 7654
No 392
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=32.23 E-value=4.1e+02 Score=30.28 Aligned_cols=108 Identities=8% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCCeEEE-Eeecc----------CCCCeEEEEEeeccCCCCCeEEEeCC
Q 005325 234 DQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSSYPIR-VKDHM----------FDSPIVDIKWHQSINTERPKLITTDN 302 (702)
Q Consensus 234 ~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~~~l~-~~~h~----------~~~~I~sl~fsp~~~~~~~ll~ss~D 302 (702)
...|.+|+++|.+...+.+++..|.|...+ ..++.-. +.... ....|.+|+++| .+.+.+++++..
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp--~~~~~~~~~~g~ 96 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDP--HNPDRLYLAQGD 96 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCT--TCTTCEEEEECS
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECC--CCCCEEEEEecc
Confidence 478999999998557788888777654433 2232221 11110 124589999987 334555554431
Q ss_pred -----CEEEEE-eCCCCceeEEecCC-------CC--ceeEEEEEcC-CCEEEEEeCC
Q 005325 303 -----HIVRIW-DPETGESMTSIEPT-------AG--KINDVCVFKD-SGLLLLALDC 344 (702)
Q Consensus 303 -----g~V~IW-d~~tg~~l~~i~~h-------~~--~I~~v~~~p~-~~~l~~a~~d 344 (702)
....|| ..+.|+....+... .+ ....|+++|. .+.++++...
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~ 154 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRT 154 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSS
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCC
Confidence 113344 33446655544320 11 1146888884 3556555544
No 393
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=28.44 E-value=6 Score=41.06 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.2
Q ss_pred hhhhcc
Q 005325 507 RFAAMF 512 (702)
Q Consensus 507 rf~~~f 512 (702)
.|.++|
T Consensus 269 ~F~k~~ 274 (335)
T 4fp9_B 269 VFKKLL 274 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 394
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=27.74 E-value=5.2e+02 Score=26.60 Aligned_cols=225 Identities=8% Similarity=0.039 Sum_probs=114.7
Q ss_pred CCEEEEEECCCeEEEEecC--Cce-----------EEEecCCCccceEEecCCCcEEEEecCCCEEEEEC---CCCeE--
Q 005325 117 YSKLAFLCADRSISLHAKY--GKH-----------YSLRIPRMGRDMAYNSWSCDLLCAASSPELYRINL---EQGRF-- 178 (702)
Q Consensus 117 g~~Las~s~D~~I~iw~~~--g~~-----------~~~~i~~~~~~l~~~~~s~~llv~s~d~~V~vwdl---~~g~~-- 178 (702)
..+.+....|+.|..|-.. |.. ....++-....+....-....++...++.||.|-. ..|++
T Consensus 68 ~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~ 147 (413)
T 1a12_A 68 GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGL 147 (413)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEES
T ss_pred CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCc
Confidence 3667778889999999432 210 11111111111222222334566678899999964 22221
Q ss_pred -------EEEee-cCCCCeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeE----------------------Eeccc
Q 005325 179 -------LSSLN-TQSPALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAAR----------------------INAVA 228 (702)
Q Consensus 179 -------~~~l~-~h~~~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~----------------------l~~~~ 228 (702)
..+.. .....|..|+....+ .+.-+.||.|..|=....-.+.. +....
T Consensus 148 ~~~~~~~~~P~~v~~~~~i~~ia~G~~h--s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 225 (413)
T 1a12_A 148 LEPMKKSMVPVQVQLDVPVVKVASGNDH--LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS 225 (413)
T ss_dssp SBBTBCEEEEEEECCSSCEEEEEECSSE--EEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBC
T ss_pred CCccccccCCEEecCCCCEEEEEecCce--EEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeecc
Confidence 11111 122356666665443 44446789999997653211110 00000
Q ss_pred CCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCC------------eEEEEeeccC-CCCeEEEEEeeccCCCCC
Q 005325 229 PAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIYDLRSS------------YPIRVKDHMF-DSPIVDIKWHQSINTERP 295 (702)
Q Consensus 229 ~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lwDlrs~------------~~l~~~~h~~-~~~I~sl~fsp~~~~~~~ 295 (702)
........|..|+... .+.++-+.+|.|..|-.... .|..+..... ...|..|+-. ..+
T Consensus 226 ~g~~~~~~i~~ia~G~---~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G-----~~h 297 (413)
T 1a12_A 226 RGSRGHVRFQDAFCGA---YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG-----QHH 297 (413)
T ss_dssp SSCCSBCCEEEEEEET---TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC-----SSE
T ss_pred ccccCCccEEEEEeCC---CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc-----cce
Confidence 0000134677777753 34555578999999976431 1222221110 1347777653 345
Q ss_pred eEEEeCCCEEEEEeCCC-Cc-----------eeEEecCCCCceeEEEEEcCCCEEEEEeCCCcEEEEEcCC
Q 005325 296 KLITTDNHIVRIWDPET-GE-----------SMTSIEPTAGKINDVCVFKDSGLLLLALDCSQIPSYFIPD 354 (702)
Q Consensus 296 ll~ss~Dg~V~IWd~~t-g~-----------~l~~i~~h~~~I~~v~~~p~~~~l~~a~~d~~I~~~~ip~ 354 (702)
.++-..++.|..|-... |+ ....+.. ...|..|+. .....++...++.|+.|=...
T Consensus 298 s~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~--G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 298 TVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC--GASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE--CSSEEEEEETTSCEEEEECCT
T ss_pred EEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE--CcceEEEEeCCCCEEEecCCC
Confidence 56666789999997643 11 1112222 225655543 334556667888999986544
No 395
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.73 E-value=74 Score=36.35 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEECCCCcceeEEecc
Q 005325 188 ALNVVSRSKLHGLIACGGEDGAVECFDMRMRSSAARINAV 227 (702)
Q Consensus 188 ~V~~l~~sp~~~llasgs~DG~V~iWD~~t~~~v~~l~~~ 227 (702)
.|.|+.+ +..++++-+.|.++++||+.+++++.+....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 3555544 3679999999999999999999999988874
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.65 E-value=1.8e+02 Score=32.30 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=41.9
Q ss_pred eEEEEEeeccCCCCCeEEEeCC-------------CEEEEEeCCCCceeEEecC-CCCceeEEEEEcCCCEEEEEeC
Q 005325 281 IVDIKWHQSINTERPKLITTDN-------------HIVRIWDPETGESMTSIEP-TAGKINDVCVFKDSGLLLLALD 343 (702)
Q Consensus 281 I~sl~fsp~~~~~~~ll~ss~D-------------g~V~IWd~~tg~~l~~i~~-h~~~I~~v~~~p~~~~l~~a~~ 343 (702)
...|.|.+ .+.|.++.|. +.|..++..+|++...+.. ....++.++|+|++..|+++-.
T Consensus 478 PDnL~fd~----~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 478 PDGLGFDK----AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECT----TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCceEECC----CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 46788886 5666665542 2677778878887655543 2457899999999998888753
No 397
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.69 E-value=65 Score=36.81 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.6
Q ss_pred CCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCCCceeEEec
Q 005325 279 SPIVDIKWHQSINTERPKLITTDNHIVRIWDPETGESMTSIE 320 (702)
Q Consensus 279 ~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~tg~~l~~i~ 320 (702)
..|.++.+. +.++++-+-|+.+|||++.++.++.+..
T Consensus 222 ~~Is~~~~~-----~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFH-----ERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEET-----TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccC-----CcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 345555553 6678888999999999999999877653
No 398
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=23.25 E-value=4.6e+02 Score=29.73 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=81.0
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcce--eEEecccCCCCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE---EcCC----
Q 005325 196 KLHGLIACGGEDGAVECFDMRMRSSA--ARINAVAPAGDADQEVTALEFDSNGGFLMGVGSSTGKVLIY---DLRS---- 266 (702)
Q Consensus 196 p~~~llasgs~DG~V~iWD~~t~~~v--~~l~~~~~~~~~~~~Vtslafspd~g~~LasGs~DG~V~lw---Dlrs---- 266 (702)
|+...+++-+.+|.|+-- .+..+ ..+... ....+..+..... ...|+.-++.|.++.. ++..
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k-----~~D~~~~~~~~~t-~d~ll~ft~~Gr~y~~~~~~lP~~~~~ 540 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYK-----AGDSFKAAVKGKS-NQPVVFVDSTGRSYAIDPITLPSARGQ 540 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC--------------------CCEEECCCS-SSCEEEEETTSEEEEECTTTSCCCC--
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccC-----CCCeEEEEEEecC-CCEEEEEecCCcEEEEEeeeccccccc
Confidence 455677888899998752 11111 111111 0133433333333 4556666777765433 3332
Q ss_pred CeEEE-EeeccCCCCeEEEEEeeccCCCCCeEEEeCCCEEEEEeCCC-------CceeEEecCCCCceeEEEEE-cCCCE
Q 005325 267 SYPIR-VKDHMFDSPIVDIKWHQSINTERPKLITTDNHIVRIWDPET-------GESMTSIEPTAGKINDVCVF-KDSGL 337 (702)
Q Consensus 267 ~~~l~-~~~h~~~~~I~sl~fsp~~~~~~~ll~ss~Dg~V~IWd~~t-------g~~l~~i~~h~~~I~~v~~~-p~~~~ 337 (702)
|.++. +.....+..|.++...+ ++.+++.++..|.|+...+.. |.....+.. ...+-.+... .....
T Consensus 541 G~~i~~ll~l~~~e~i~~~~~~~---~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~ 616 (716)
T 1zvu_A 541 GEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDM 616 (716)
T ss_dssp -CBSTTTSCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCE
T ss_pred CeeHHhccCCCCCCeEEEEEEec---CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCE
Confidence 22322 11111245666665442 466788888999999887642 333434444 4455555555 34567
Q ss_pred EEEEeCCCcEEEEEcCCCCCC
Q 005325 338 LLLALDCSQIPSYFIPDLGPT 358 (702)
Q Consensus 338 l~~a~~d~~I~~~~ip~lg~a 358 (702)
+++++..|.+..|....+.+.
T Consensus 617 v~l~t~~g~~lrf~~~~v~~~ 637 (716)
T 1zvu_A 617 LLAITQAGRMLMFPVSDLPQL 637 (716)
T ss_dssp EEEEETTSEEEEEESTTSCBC
T ss_pred EEEEeCCCeEEEEEHHHCCcc
Confidence 999999999999988766443
No 399
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.20 E-value=1.9e+02 Score=32.24 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred CeEEEEEcCCCCCEEEEEeCC------------CeEEEEEcCCCeEEEEeeccCCCCeEEEEEeeccCCCCCeEEE
Q 005325 236 EVTALEFDSNGGFLMGVGSST------------GKVLIYDLRSSYPIRVKDHMFDSPIVDIKWHQSINTERPKLIT 299 (702)
Q Consensus 236 ~Vtslafspd~g~~LasGs~D------------G~V~lwDlrs~~~l~~~~h~~~~~I~sl~fsp~~~~~~~ll~s 299 (702)
..-.|+|+|. |.++++-..+ ..+.+++..+++...+..-..+..++.++|+| ++..|++.
T Consensus 477 ~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp---Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP---DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT---TSSEEEEE
T ss_pred CCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC---CCCEEEEE
Confidence 4567999999 8755553322 34667777777766643333578999999998 44444444
No 400
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=20.31 E-value=25 Score=36.50 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=0.0
Q ss_pred hccCCcccccccCCCCCCcccccCCCCchhhhhhhhc
Q 005325 543 EHFEPVMEVDKDQSLSDSDVSAASQSSDDELGKEKIN 579 (702)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (702)
+..+.++++++|+++++++++|+.++++++.++++..
T Consensus 336 ~l~~~d~~~e~e~e~eeeee~eee~~~~e~~~~~~~~ 372 (386)
T 2ca6_A 336 ELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEK 372 (386)
T ss_dssp EECCCCSCC----------------------------
T ss_pred hhhhcccccccccccccccccccccccccccchhhhh
Done!