BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005329
(702 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 116/323 (35%), Gaps = 77/323 (23%)
Query: 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPR--PNEFAFASVLSVCGNMAILEQGKQIHA 435
++S + Y + G +EA E+ R P A+ L G+M E Q +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM---EGAVQAYV 125
Query: 436 HVMSIGLERTAMIKSALINMYSKCGSIKEASQIFY---ETESDDIVSWTAMINGYAEHGY 492
+ + ++S L N+ G ++EA + ET+ + V+W+ + + G
Sbjct: 126 SALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 493 SQEAIHLFEK--------------------------------VPMVGLRPDSVTFMGVLT 520
AIH FEK + + L P+ G L
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL- 243
Query: 521 ACSH--AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQK 578
AC + GL+DL + + P + Y + + L G +++AE+
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEAED--------- 292
Query: 579 DDVVWSTLLRACMV--------------QGDVNCGRHTAEKILELHPSCAGTHITLANIY 624
++T LR C QG++ K LE+ P A H LA++
Sbjct: 293 ---CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 625 AAKGRWREAAEVRKMMRSKGVIK 647
+G+ +EA +M K I+
Sbjct: 350 QQQGKLQEA-----LMHYKEAIR 367
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL+P+ A L N Y +G + EA E
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL+P+ A L N Y +G + EA E
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 98
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD +K LEL P+ A L N Y +G +++A E
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 197 FAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATM 253
F + +S+EQ Y ++ ASA A+NFG+ +D S++ N+ TM
Sbjct: 543 FPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQ----------YDWASWIPNAPPTM 589
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 197 FAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATM 253
F + +S+EQ Y ++ ASA A+NFG+ +D S++ N+ TM
Sbjct: 543 FPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQ----------YDWASWIPNAPPTM 589
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 197 FAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATM 253
F + +S+EQ Y ++ ASA A+NFG+ +D S++ N+ TM
Sbjct: 543 FPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQ----------YDWASWIPNAPPTM 589
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P+ A L N Y +G + EA E
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P+ A L N Y +G + EA E
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P+ A L N Y +G + EA E
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P A L N Y +G + EA E
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P A L N Y +G + EA E
Sbjct: 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P A L N Y +G + EA E
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQG---KQIH 434
+W + Y + G +EA EY PR E + GN A +QG + I
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-----LGN-AYYKQGDYDEAIE 56
Query: 435 AHVMSIGLE-RTAMIKSALINMYSKCGSIKEASQIF---YETESDDIVSWTAMINGYAEH 490
+ ++ L+ R+A L N Y K G EA + + E + +W + N Y +
Sbjct: 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116
Query: 491 GYSQEAIHLFEK 502
G EAI ++K
Sbjct: 117 GDYDEAIEYYQK 128
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635
W L A QGD + +K LEL P A L N Y +G + EA E
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 58
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 73 ISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLA---LKACALNVNVNYGES 129
IS +L+SG+V A+ ++ +L LF R + N DP +LS+A L L ++ +
Sbjct: 319 ISGVSLVSGWVLAVITVLSLVLF-RSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQC 377
Query: 130 LHGYTVKTGFVNSV--------FVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAII 181
+ Y ++ V V F G LL Y + ++G F WTA+I
Sbjct: 378 IASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGF----------WTALI 427
Query: 182 TGLVRA 187
L A
Sbjct: 428 ASLTIA 433
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,879,699
Number of Sequences: 62578
Number of extensions: 791480
Number of successful extensions: 2027
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1990
Number of HSP's gapped (non-prelim): 44
length of query: 702
length of database: 14,973,337
effective HSP length: 106
effective length of query: 596
effective length of database: 8,340,069
effective search space: 4970681124
effective search space used: 4970681124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)