Query 005329
Match_columns 702
No_of_seqs 662 out of 4118
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 21:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.3E-99 7E-104 850.2 77.9 686 11-699 86-779 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-78 2.3E-83 684.0 65.8 576 69-649 48-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 8.3E-78 1.8E-82 660.6 62.5 532 171-702 84-619 (697)
4 PLN03218 maturation of RBCL 1; 100.0 7.6E-68 1.6E-72 582.2 54.4 529 32-576 361-908 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.7E-67 8.1E-72 576.3 56.0 476 69-547 84-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.4E-64 2.9E-69 556.6 59.5 504 104-610 366-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-36 1.7E-40 345.3 65.8 582 47-641 301-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-35 4.5E-40 341.9 66.0 621 40-700 226-897 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-26 2.9E-31 267.8 64.4 580 44-642 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 3E-24 6.6E-29 248.3 63.2 557 75-644 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.9E-23 6.3E-28 228.7 62.9 570 44-644 45-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 5.3E-22 1.2E-26 218.7 57.4 580 40-645 77-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.7E-21 8E-26 187.6 35.8 443 177-632 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 6.2E-22 1.3E-26 193.0 28.5 420 214-645 53-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 7.5E-18 1.6E-22 173.7 46.3 577 57-646 146-801 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-18 3.3E-23 188.8 41.5 418 177-643 130-571 (615)
17 KOG2002 TPR-containing nuclear 99.9 1.6E-17 3.5E-22 171.3 45.6 423 208-644 269-746 (1018)
18 PRK11788 tetratricopeptide rep 99.8 6.7E-19 1.4E-23 182.1 29.5 292 320-653 45-357 (389)
19 PRK15174 Vi polysaccharide exp 99.8 2.6E-17 5.5E-22 178.3 40.4 350 256-614 17-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.5E-21 175.1 47.6 390 216-643 22-456 (765)
21 PRK10049 pgaA outer membrane p 99.8 8.1E-17 1.8E-21 178.4 44.3 372 241-646 12-425 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-16 2.4E-21 174.2 43.9 428 145-615 129-577 (615)
23 PRK15174 Vi polysaccharide exp 99.8 5.2E-17 1.1E-21 175.9 38.5 353 285-646 15-384 (656)
24 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.2E-22 172.1 32.4 294 281-609 41-347 (389)
25 PRK14574 hmsH outer membrane p 99.8 1.5E-15 3.3E-20 164.6 46.5 435 152-616 43-520 (822)
26 KOG2076 RNA polymerase III tra 99.8 2.2E-14 4.8E-19 147.5 49.4 585 47-639 145-891 (895)
27 KOG4422 Uncharacterized conser 99.8 3.2E-15 7E-20 140.3 39.3 445 72-576 116-589 (625)
28 PRK14574 hmsH outer membrane p 99.8 2.6E-14 5.6E-19 155.1 46.0 443 115-587 41-524 (822)
29 KOG2003 TPR repeat-containing 99.8 7.6E-15 1.7E-19 138.7 33.3 464 145-630 203-710 (840)
30 KOG2076 RNA polymerase III tra 99.7 5.1E-13 1.1E-17 137.7 47.4 561 82-645 149-851 (895)
31 KOG4422 Uncharacterized conser 99.7 4.6E-14 9.9E-19 132.7 35.0 421 28-478 137-593 (625)
32 KOG0495 HAT repeat protein [RN 99.7 2.7E-11 5.9E-16 120.4 54.2 462 180-654 412-889 (913)
33 KOG0495 HAT repeat protein [RN 99.7 4.6E-12 1E-16 125.7 47.8 545 86-654 265-857 (913)
34 KOG4318 Bicoid mRNA stability 99.7 6.1E-13 1.3E-17 136.3 35.2 525 93-647 11-598 (1088)
35 KOG0547 Translocase of outer m 99.7 3.5E-13 7.5E-18 129.2 31.1 405 179-642 120-565 (606)
36 KOG2003 TPR repeat-containing 99.6 1.7E-12 3.6E-17 123.1 31.7 434 181-643 208-689 (840)
37 KOG4318 Bicoid mRNA stability 99.6 3.5E-12 7.5E-17 130.9 35.9 452 172-641 202-734 (1088)
38 PF13429 TPR_15: Tetratricopep 99.6 1.4E-15 3.1E-20 148.5 11.1 255 383-642 15-276 (280)
39 KOG1126 DNA-binding cell divis 99.6 3.5E-13 7.6E-18 134.7 23.0 273 360-642 334-619 (638)
40 KOG1915 Cell cycle control pro 99.6 3E-10 6.5E-15 108.9 40.3 414 155-576 85-535 (677)
41 KOG1915 Cell cycle control pro 99.6 5.2E-10 1.1E-14 107.3 41.2 438 105-556 70-548 (677)
42 KOG1126 DNA-binding cell divis 99.6 6.9E-13 1.5E-17 132.6 23.0 247 391-643 334-586 (638)
43 PRK10747 putative protoheme IX 99.6 6.6E-12 1.4E-16 128.4 30.0 275 358-642 97-389 (398)
44 KOG2047 mRNA splicing factor [ 99.5 1.1E-08 2.4E-13 102.0 48.4 532 74-630 104-710 (835)
45 KOG1155 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 110.3 34.2 254 383-642 234-494 (559)
46 KOG1155 Anaphase-promoting com 99.5 4.3E-11 9.2E-16 114.4 29.1 194 445-642 329-535 (559)
47 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3.1E-18 134.4 11.5 254 416-698 13-272 (280)
48 KOG1173 Anaphase-promoting com 99.5 1.2E-10 2.5E-15 114.4 30.6 259 379-643 247-518 (611)
49 PRK10747 putative protoheme IX 99.5 4.7E-11 1E-15 122.2 29.1 285 288-610 97-391 (398)
50 TIGR00540 hemY_coli hemY prote 99.5 1.6E-10 3.4E-15 119.1 32.8 117 287-405 96-216 (409)
51 TIGR00540 hemY_coli hemY prote 99.5 6.6E-11 1.4E-15 121.8 30.0 128 511-642 262-398 (409)
52 TIGR02521 type_IV_pilW type IV 99.4 4.2E-11 9.2E-16 114.2 23.0 198 445-643 30-232 (234)
53 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.5E-14 103.4 31.1 287 288-609 97-390 (400)
54 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.3E-12 95.3 45.0 491 142-642 101-686 (835)
55 COG2956 Predicted N-acetylgluc 99.4 6.4E-10 1.4E-14 101.7 27.1 308 287-657 47-361 (389)
56 KOG1173 Anaphase-promoting com 99.4 7.2E-09 1.6E-13 102.1 33.8 279 344-626 243-535 (611)
57 COG2956 Predicted N-acetylgluc 99.4 2.1E-09 4.6E-14 98.4 28.0 287 257-609 48-347 (389)
58 KOG0547 Translocase of outer m 99.4 1.5E-09 3.2E-14 104.8 28.0 335 77-440 120-491 (606)
59 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4.1E-14 101.9 28.2 277 358-642 97-389 (400)
60 KOG4162 Predicted calmodulin-b 99.3 2E-08 4.3E-13 102.8 37.2 398 238-643 317-783 (799)
61 KOG0985 Vesicle coat protein c 99.3 7.2E-07 1.6E-11 93.7 48.6 583 21-640 459-1246(1666)
62 KOG1840 Kinesin light chain [C 99.3 5.3E-10 1.1E-14 113.6 25.1 231 412-642 200-478 (508)
63 KOG3785 Uncharacterized conser 99.3 6.8E-09 1.5E-13 96.1 29.7 233 153-402 67-311 (557)
64 KOG4162 Predicted calmodulin-b 99.3 2.1E-08 4.5E-13 102.6 35.7 308 292-614 461-788 (799)
65 KOG1174 Anaphase-promoting com 99.3 2.4E-08 5.2E-13 94.5 32.4 305 307-617 191-508 (564)
66 COG3063 PilF Tfp pilus assembl 99.3 8.2E-10 1.8E-14 96.5 19.9 163 479-645 37-204 (250)
67 KOG1129 TPR repeat-containing 99.3 1.5E-10 3.4E-15 105.6 15.9 192 451-645 261-460 (478)
68 KOG2376 Signal recognition par 99.3 1.8E-07 4E-12 92.9 38.0 432 181-638 19-515 (652)
69 KOG3616 Selective LIM binding 99.3 5.2E-07 1.1E-11 91.6 40.7 499 82-643 454-1024(1636)
70 KOG1129 TPR repeat-containing 99.2 1.7E-10 3.7E-15 105.3 14.0 235 382-621 229-470 (478)
71 KOG1174 Anaphase-promoting com 99.2 3.9E-07 8.4E-12 86.5 36.2 400 246-688 99-519 (564)
72 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.8E-16 82.7 6.1 50 172-221 1-50 (50)
73 KOG3785 Uncharacterized conser 99.2 6.7E-07 1.5E-11 83.2 35.3 129 480-611 362-492 (557)
74 PRK11189 lipoprotein NlpI; Pro 99.2 2.6E-09 5.6E-14 104.5 21.0 188 449-643 67-265 (296)
75 PF13041 PPR_2: PPR repeat fam 99.2 4.1E-11 8.9E-16 81.4 5.9 50 273-322 1-50 (50)
76 PRK12370 invasion protein regu 99.2 9.1E-09 2E-13 110.2 25.8 245 391-645 276-537 (553)
77 PRK12370 invasion protein regu 99.2 4.2E-09 9.1E-14 112.8 22.6 211 425-643 275-502 (553)
78 KOG0985 Vesicle coat protein c 99.2 4.2E-06 9.2E-11 88.2 42.8 127 41-169 606-750 (1666)
79 PF12569 NARP1: NMDA receptor- 99.1 4.6E-07 9.9E-12 93.8 35.7 46 594-639 471-516 (517)
80 TIGR02521 type_IV_pilW type IV 99.1 1.2E-08 2.6E-13 97.1 23.0 197 376-611 31-234 (234)
81 KOG1127 TPR repeat-containing 99.1 5E-07 1.1E-11 95.1 35.4 564 41-627 492-1122(1238)
82 KOG1156 N-terminal acetyltrans 99.1 2.7E-06 5.8E-11 85.9 38.0 446 187-642 20-510 (700)
83 KOG3616 Selective LIM binding 99.1 1.9E-05 4.1E-10 80.6 42.8 193 48-269 739-933 (1636)
84 KOG1840 Kinesin light chain [C 99.1 7.4E-08 1.6E-12 98.2 26.0 200 381-608 246-478 (508)
85 KOG3617 WD40 and TPR repeat-co 99.1 1E-05 2.2E-10 83.7 40.7 232 48-302 735-994 (1416)
86 PRK11189 lipoprotein NlpI; Pro 99.1 9.4E-08 2E-12 93.6 25.6 232 390-629 40-286 (296)
87 KOG1156 N-terminal acetyltrans 99.0 3.9E-06 8.5E-11 84.7 34.6 415 221-645 19-470 (700)
88 KOG0548 Molecular co-chaperone 99.0 2.8E-07 6.1E-12 90.8 24.9 86 183-271 11-97 (539)
89 KOG1127 TPR repeat-containing 99.0 4E-06 8.6E-11 88.6 34.6 563 57-642 474-1103(1238)
90 PF04733 Coatomer_E: Coatomer 99.0 4.6E-08 9.9E-13 94.1 19.1 156 453-615 109-271 (290)
91 KOG2376 Signal recognition par 99.0 3E-05 6.5E-10 77.7 38.5 118 79-204 19-140 (652)
92 KOG0548 Molecular co-chaperone 99.0 6.9E-07 1.5E-11 88.2 26.7 166 452-627 304-473 (539)
93 PF04733 Coatomer_E: Coatomer 99.0 3.2E-08 6.9E-13 95.2 17.5 192 443-643 63-265 (290)
94 KOG3617 WD40 and TPR repeat-co 99.0 1E-05 2.2E-10 83.7 35.7 266 63-370 717-992 (1416)
95 COG3063 PilF Tfp pilus assembl 99.0 1.6E-07 3.4E-12 82.5 19.8 190 451-642 40-235 (250)
96 PF12569 NARP1: NMDA receptor- 98.9 1.1E-06 2.3E-11 91.1 28.1 126 514-642 196-333 (517)
97 KOG1125 TPR repeat-containing 98.9 3.1E-08 6.7E-13 98.3 15.7 195 447-643 320-527 (579)
98 KOG0624 dsRNA-activated protei 98.9 3.5E-06 7.7E-11 78.2 27.6 287 351-643 44-370 (504)
99 PRK04841 transcriptional regul 98.9 0.00023 5.1E-09 82.5 48.7 362 251-643 348-760 (903)
100 KOG4340 Uncharacterized conser 98.9 6E-06 1.3E-10 75.2 26.7 394 205-642 6-442 (459)
101 TIGR03302 OM_YfiO outer membra 98.8 3.1E-07 6.7E-12 87.3 19.0 180 445-644 32-233 (235)
102 cd05804 StaR_like StaR_like; a 98.8 9.5E-06 2.1E-10 82.7 30.6 257 384-644 51-337 (355)
103 PRK10370 formate-dependent nit 98.8 4.2E-07 9E-12 82.6 17.8 147 484-645 23-175 (198)
104 PRK15359 type III secretion sy 98.8 8.3E-08 1.8E-12 82.4 11.8 93 551-643 27-121 (144)
105 PRK15359 type III secretion sy 98.7 2.1E-07 4.5E-12 79.9 12.5 122 498-626 14-138 (144)
106 KOG0624 dsRNA-activated protei 98.7 4E-05 8.8E-10 71.4 26.5 311 249-616 43-377 (504)
107 PRK15179 Vi polysaccharide bio 98.7 1.4E-06 3E-11 93.8 19.6 189 413-618 30-226 (694)
108 COG5010 TadD Flp pilus assembl 98.6 3.2E-06 6.8E-11 76.2 17.8 125 516-642 70-196 (257)
109 cd05804 StaR_like StaR_like; a 98.6 0.00012 2.5E-09 74.8 31.5 196 74-271 8-213 (355)
110 KOG1070 rRNA processing protei 98.6 4.4E-06 9.5E-11 91.3 21.1 222 445-693 1457-1690(1710)
111 KOG4340 Uncharacterized conser 98.6 6.9E-06 1.5E-10 74.8 19.0 294 305-638 5-334 (459)
112 KOG1128 Uncharacterized conser 98.6 2E-06 4.2E-11 88.1 16.6 184 450-643 428-616 (777)
113 PRK15363 pathogenicity island 98.6 1.3E-06 2.7E-11 73.4 12.7 96 548-643 35-132 (157)
114 PRK10370 formate-dependent nit 98.6 4.6E-06 9.9E-11 75.8 17.3 154 453-618 23-182 (198)
115 TIGR02552 LcrH_SycD type III s 98.5 1E-06 2.3E-11 75.4 11.7 102 543-644 11-115 (135)
116 KOG1128 Uncharacterized conser 98.5 6.4E-06 1.4E-10 84.4 18.6 196 441-651 393-590 (777)
117 COG5010 TadD Flp pilus assembl 98.5 1.9E-05 4E-10 71.4 18.2 159 476-638 66-226 (257)
118 KOG1914 mRNA cleavage and poly 98.5 0.002 4.2E-08 64.4 35.7 149 392-541 347-501 (656)
119 KOG2053 Mitochondrial inherita 98.5 0.0034 7.4E-08 66.7 41.8 159 479-641 438-606 (932)
120 PRK04841 transcriptional regul 98.5 0.00036 7.9E-09 81.0 33.9 56 418-473 698-758 (903)
121 KOG3081 Vesicle coat complex C 98.5 0.00012 2.6E-09 66.2 22.5 153 455-614 117-276 (299)
122 KOG1125 TPR repeat-containing 98.5 9E-06 1.9E-10 81.3 17.1 251 354-634 294-562 (579)
123 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 5.1E-12 56.2 3.7 32 239-270 2-33 (34)
124 PF12854 PPR_1: PPR repeat 98.4 1.9E-07 4.1E-12 56.6 3.2 33 138-170 2-34 (34)
125 PRK15179 Vi polysaccharide bio 98.4 3.2E-05 7E-10 83.5 21.8 130 442-576 82-216 (694)
126 PLN02789 farnesyltranstransfer 98.4 8.6E-05 1.9E-09 72.7 22.7 177 461-641 87-300 (320)
127 COG4783 Putative Zn-dependent 98.4 5.8E-05 1.3E-09 74.3 21.1 116 525-643 319-454 (484)
128 PLN02789 farnesyltranstransfer 98.4 3.1E-05 6.8E-10 75.7 19.2 185 456-644 47-251 (320)
129 TIGR03302 OM_YfiO outer membra 98.4 1.6E-05 3.5E-10 75.5 16.9 183 408-611 30-234 (235)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.1E-06 1.3E-10 82.1 14.1 123 514-641 171-295 (395)
131 KOG3060 Uncharacterized conser 98.4 3.3E-05 7.1E-10 69.1 16.1 161 480-645 55-222 (289)
132 KOG3081 Vesicle coat complex C 98.3 0.00016 3.5E-09 65.4 19.0 150 483-642 114-270 (299)
133 COG4783 Putative Zn-dependent 98.3 9.6E-05 2.1E-09 72.8 18.8 125 482-611 311-439 (484)
134 KOG1070 rRNA processing protei 98.3 0.00017 3.8E-09 79.4 22.2 220 413-636 1460-1693(1710)
135 TIGR02552 LcrH_SycD type III s 98.3 1.9E-05 4.2E-10 67.4 12.6 114 499-617 5-122 (135)
136 PRK14720 transcript cleavage f 98.3 0.0002 4.3E-09 78.2 22.8 146 449-625 119-268 (906)
137 PF09976 TPR_21: Tetratricopep 98.2 3.9E-05 8.5E-10 66.2 13.5 115 525-640 24-144 (145)
138 KOG0553 TPR repeat-containing 98.2 1.3E-05 2.9E-10 73.8 10.8 98 521-621 90-190 (304)
139 KOG3060 Uncharacterized conser 98.2 0.00012 2.6E-09 65.6 16.1 150 491-643 26-183 (289)
140 PF13414 TPR_11: TPR repeat; P 98.2 5.3E-06 1.1E-10 61.0 6.6 65 579-643 2-67 (69)
141 cd00189 TPR Tetratricopeptide 98.2 1.9E-05 4.1E-10 62.5 10.0 94 550-643 2-97 (100)
142 PF12895 Apc3: Anaphase-promot 98.1 2.2E-06 4.8E-11 65.9 3.8 78 561-639 2-83 (84)
143 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.6E-05 7.7E-10 64.1 11.5 95 550-644 4-106 (119)
144 PLN03088 SGT1, suppressor of 98.1 4.9E-05 1.1E-09 76.3 13.7 102 519-623 9-113 (356)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00015 3.2E-09 62.6 14.9 126 479-607 14-145 (145)
146 PF13432 TPR_16: Tetratricopep 98.1 8.7E-06 1.9E-10 59.0 5.8 59 586-644 3-61 (65)
147 KOG0553 TPR repeat-containing 98.1 2.8E-05 6.1E-10 71.7 10.0 96 485-585 89-187 (304)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3.1E-09 72.6 15.7 121 47-170 175-295 (395)
149 TIGR00756 PPR pentatricopeptid 98.0 9.4E-06 2E-10 50.1 4.6 35 175-209 1-35 (35)
150 PF14559 TPR_19: Tetratricopep 98.0 2.4E-05 5.3E-10 57.3 7.0 53 591-643 2-54 (68)
151 PRK14720 transcript cleavage f 98.0 0.0042 9E-08 68.3 26.5 148 413-591 118-268 (906)
152 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.5E-10 49.7 4.4 35 276-310 1-35 (35)
153 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.7E-09 68.0 12.4 105 545-649 152-262 (287)
154 PRK15331 chaperone protein Sic 98.0 0.00015 3.3E-09 61.3 11.8 100 543-642 31-133 (165)
155 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.5E-09 60.0 12.2 105 514-618 4-114 (119)
156 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 48.4 4.4 33 175-207 2-34 (34)
157 KOG0550 Molecular chaperone (D 97.9 0.00067 1.5E-08 65.3 16.7 153 485-643 177-350 (486)
158 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.5E-10 48.1 4.3 33 276-308 2-34 (34)
159 PRK02603 photosystem I assembl 97.9 0.00015 3.3E-09 64.7 11.5 82 548-629 35-121 (172)
160 PLN03088 SGT1, suppressor of 97.9 0.00016 3.4E-09 72.7 12.8 102 483-588 8-111 (356)
161 KOG1914 mRNA cleavage and poly 97.8 0.046 1E-06 55.1 37.4 171 462-635 347-531 (656)
162 CHL00033 ycf3 photosystem I as 97.8 0.00019 4.1E-09 63.9 10.6 93 548-640 35-139 (168)
163 PF13371 TPR_9: Tetratricopept 97.8 8.4E-05 1.8E-09 55.3 6.8 59 587-645 2-60 (73)
164 PF13432 TPR_16: Tetratricopep 97.8 6.1E-05 1.3E-09 54.5 5.8 61 554-614 3-65 (65)
165 COG4700 Uncharacterized protei 97.8 0.0033 7.2E-08 53.7 16.5 133 508-642 85-221 (251)
166 PRK02603 photosystem I assembl 97.7 0.00083 1.8E-08 59.9 13.7 129 477-629 35-166 (172)
167 PRK10153 DNA-binding transcrip 97.7 0.0013 2.8E-08 69.1 16.9 62 581-643 421-482 (517)
168 PRK10153 DNA-binding transcrip 97.7 0.001 2.2E-08 69.9 15.9 144 471-616 331-489 (517)
169 KOG2053 Mitochondrial inherita 97.6 0.14 3E-06 55.1 42.7 118 516-636 440-563 (932)
170 COG3898 Uncharacterized membra 97.6 0.072 1.6E-06 51.5 27.4 282 359-656 98-403 (531)
171 PF13431 TPR_17: Tetratricopep 97.6 5E-05 1.1E-09 46.0 2.6 34 602-635 1-34 (34)
172 cd00189 TPR Tetratricopeptide 97.6 0.0005 1.1E-08 54.1 9.5 91 518-611 6-99 (100)
173 PF05843 Suf: Suppressor of fo 97.6 0.0026 5.7E-08 61.6 15.5 135 478-615 2-142 (280)
174 PF01535 PPR: PPR repeat; Int 97.6 9.6E-05 2.1E-09 44.0 3.6 31 175-205 1-31 (31)
175 PF12688 TPR_5: Tetratrico pep 97.6 0.00084 1.8E-08 54.7 9.8 89 553-641 6-102 (120)
176 PF12895 Apc3: Anaphase-promot 97.5 0.0003 6.6E-09 53.9 6.9 78 491-572 3-82 (84)
177 PF13414 TPR_11: TPR repeat; P 97.5 0.00017 3.7E-09 52.9 5.2 65 547-611 2-69 (69)
178 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.5E-09 43.6 3.5 31 276-306 1-31 (31)
179 PF07079 DUF1347: Protein of u 97.5 0.11 2.4E-06 51.4 37.2 61 579-640 459-521 (549)
180 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.3E-07 56.6 20.1 115 484-613 101-229 (282)
181 KOG2280 Vacuolar assembly/sort 97.5 0.17 3.7E-06 53.3 27.6 98 202-300 425-532 (829)
182 CHL00033 ycf3 photosystem I as 97.5 0.0019 4.1E-08 57.4 12.4 64 550-613 74-153 (168)
183 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.5E-06 50.8 30.6 107 450-573 181-287 (319)
184 PRK10803 tol-pal system protei 97.5 0.00086 1.9E-08 63.6 10.6 85 559-643 154-246 (263)
185 PF14559 TPR_19: Tetratricopep 97.5 0.00012 2.6E-09 53.5 3.8 57 561-617 4-62 (68)
186 PF07079 DUF1347: Protein of u 97.5 0.13 2.8E-06 50.9 35.2 202 376-585 298-530 (549)
187 PRK15363 pathogenicity island 97.4 0.0042 9.1E-08 52.6 12.4 94 476-574 34-129 (157)
188 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00073 1.6E-08 67.1 9.1 66 578-643 73-141 (453)
189 PF14938 SNAP: Soluble NSF att 97.4 0.16 3.4E-06 49.5 27.9 98 479-576 157-265 (282)
190 PF10037 MRP-S27: Mitochondria 97.4 0.0017 3.6E-08 65.3 11.2 119 139-257 62-186 (429)
191 PF04840 Vps16_C: Vps16, C-ter 97.4 0.16 3.5E-06 49.8 24.6 110 513-639 178-287 (319)
192 PF08579 RPM2: Mitochondrial r 97.4 0.0023 5.1E-08 49.9 9.3 80 177-256 28-116 (120)
193 PRK10866 outer membrane biogen 97.3 0.038 8.2E-07 52.1 19.6 57 585-641 180-239 (243)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.0015 3.3E-08 62.8 9.8 130 513-642 196-343 (639)
195 PF13428 TPR_14: Tetratricopep 97.3 0.00049 1.1E-08 44.8 4.8 42 581-622 2-43 (44)
196 PF10037 MRP-S27: Mitochondria 97.3 0.0034 7.5E-08 63.1 12.2 118 241-358 63-186 (429)
197 COG3898 Uncharacterized membra 97.2 0.22 4.7E-06 48.3 24.1 243 85-338 133-391 (531)
198 KOG1538 Uncharacterized conser 97.2 0.09 1.9E-06 54.1 21.3 227 317-608 605-845 (1081)
199 KOG2041 WD40 repeat protein [G 97.2 0.36 7.9E-06 50.4 26.5 200 105-333 689-901 (1189)
200 PF13424 TPR_12: Tetratricopep 97.2 0.00069 1.5E-08 51.1 5.3 62 581-642 6-74 (78)
201 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.8E-08 48.8 6.5 66 555-620 2-69 (73)
202 COG4700 Uncharacterized protei 97.2 0.088 1.9E-06 45.4 17.6 132 475-609 87-222 (251)
203 PRK10803 tol-pal system protei 97.2 0.0047 1E-07 58.6 11.5 99 514-615 145-252 (263)
204 KOG0543 FKBP-type peptidyl-pro 97.2 0.003 6.6E-08 61.3 10.2 62 581-642 258-319 (397)
205 PF08579 RPM2: Mitochondrial r 97.1 0.0089 1.9E-07 46.8 10.3 78 280-357 30-116 (120)
206 PF05843 Suf: Suppressor of fo 97.1 0.0058 1.2E-07 59.2 11.8 129 513-643 2-136 (280)
207 KOG0543 FKBP-type peptidyl-pro 97.1 0.0058 1.2E-07 59.5 11.0 96 548-643 257-355 (397)
208 KOG0550 Molecular chaperone (D 97.0 0.081 1.7E-06 51.6 17.8 84 524-610 261-351 (486)
209 PRK11906 transcriptional regul 97.0 0.011 2.4E-07 59.1 12.5 63 579-641 337-399 (458)
210 PF13525 YfiO: Outer membrane 97.0 0.031 6.8E-07 51.2 14.9 49 586-634 147-198 (203)
211 PF13281 DUF4071: Domain of un 97.0 0.1 2.2E-06 51.6 18.8 161 452-615 147-340 (374)
212 KOG1538 Uncharacterized conser 96.9 0.27 5.9E-06 50.8 21.5 66 115-201 605-672 (1081)
213 KOG2796 Uncharacterized conser 96.9 0.064 1.4E-06 48.9 15.3 135 479-614 179-320 (366)
214 PF09205 DUF1955: Domain of un 96.9 0.085 1.8E-06 42.6 14.2 141 487-646 12-152 (161)
215 KOG2796 Uncharacterized conser 96.8 0.079 1.7E-06 48.3 15.2 135 378-514 179-321 (366)
216 PF06239 ECSIT: Evolutionarily 96.8 0.0086 1.9E-07 53.2 8.9 97 163-259 34-153 (228)
217 PRK10866 outer membrane biogen 96.8 0.28 6E-06 46.3 19.8 59 382-440 38-98 (243)
218 PF03704 BTAD: Bacterial trans 96.8 0.034 7.3E-07 48.0 12.7 62 581-642 63-124 (146)
219 PF12688 TPR_5: Tetratrico pep 96.8 0.036 7.8E-07 45.2 11.8 90 483-575 7-102 (120)
220 PF13512 TPR_18: Tetratricopep 96.8 0.036 7.7E-07 46.2 11.7 91 554-644 16-129 (142)
221 COG4235 Cytochrome c biogenesi 96.8 0.032 7E-07 52.4 12.8 104 509-615 153-262 (287)
222 PF13424 TPR_12: Tetratricopep 96.7 0.0014 3.1E-08 49.3 3.3 61 549-609 6-75 (78)
223 KOG2280 Vacuolar assembly/sort 96.7 1.2 2.6E-05 47.4 30.1 326 279-639 441-795 (829)
224 KOG1130 Predicted G-alpha GTPa 96.6 0.013 2.8E-07 56.7 9.5 256 284-539 26-342 (639)
225 KOG4555 TPR repeat-containing 96.6 0.02 4.4E-07 45.9 8.5 90 556-645 51-146 (175)
226 PF06239 ECSIT: Evolutionarily 96.5 0.03 6.6E-07 49.9 10.4 89 373-461 44-153 (228)
227 COG0457 NrfG FOG: TPR repeat [ 96.4 0.86 1.9E-05 42.7 27.0 195 446-644 59-266 (291)
228 COG1729 Uncharacterized protei 96.3 0.026 5.6E-07 52.3 9.3 91 524-614 153-249 (262)
229 KOG4234 TPR repeat-containing 96.3 0.024 5.3E-07 49.3 8.2 91 555-645 102-199 (271)
230 PF13525 YfiO: Outer membrane 96.3 0.62 1.3E-05 42.7 18.0 57 383-439 12-70 (203)
231 KOG1258 mRNA processing protei 96.2 1.9 4.1E-05 44.9 31.9 185 445-632 296-493 (577)
232 KOG1941 Acetylcholine receptor 96.2 0.11 2.4E-06 49.7 12.5 162 479-640 85-272 (518)
233 COG1729 Uncharacterized protei 96.1 0.048 1E-06 50.6 9.9 86 560-645 153-246 (262)
234 KOG2041 WD40 repeat protein [G 96.1 2.2 4.8E-05 44.9 30.9 40 159-200 679-718 (1189)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.032 7E-07 55.8 9.3 62 548-609 75-141 (453)
236 PF12921 ATP13: Mitochondrial 95.9 0.12 2.5E-06 42.7 10.2 96 446-557 2-97 (126)
237 PRK15331 chaperone protein Sic 95.8 0.18 3.8E-06 43.2 11.2 94 484-580 44-137 (165)
238 PF07719 TPR_2: Tetratricopept 95.8 0.028 6.1E-07 33.9 5.0 33 581-613 2-34 (34)
239 PRK11619 lytic murein transgly 95.8 3.9 8.4E-05 44.8 31.3 54 351-405 105-158 (644)
240 PF10300 DUF3808: Protein of u 95.8 0.49 1.1E-05 49.6 16.8 157 483-642 194-375 (468)
241 PF00515 TPR_1: Tetratricopept 95.7 0.023 5E-07 34.3 4.3 32 581-612 2-33 (34)
242 KOG1920 IkappaB kinase complex 95.7 4.8 0.0001 45.5 24.5 111 479-607 941-1053(1265)
243 PRK11906 transcriptional regul 95.7 0.44 9.5E-06 48.1 15.1 143 493-639 274-432 (458)
244 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.7 5.8E-05 42.0 33.2 133 477-613 397-535 (660)
245 KOG1585 Protein required for f 95.6 1.5 3.2E-05 40.0 16.5 88 549-637 151-250 (308)
246 COG3118 Thioredoxin domain-con 95.5 1.3 2.9E-05 41.8 16.2 33 608-640 230-262 (304)
247 PF13281 DUF4071: Domain of un 95.4 1.3 2.9E-05 44.0 17.3 164 479-643 143-334 (374)
248 KOG2610 Uncharacterized conser 95.4 0.36 7.8E-06 45.8 12.3 148 490-640 116-273 (491)
249 PF03704 BTAD: Bacterial trans 95.3 0.14 3.1E-06 44.0 9.5 72 479-551 64-139 (146)
250 COG4785 NlpI Lipoprotein NlpI, 95.3 1.8 3.9E-05 38.7 15.6 161 477-644 99-267 (297)
251 PF13428 TPR_14: Tetratricopep 95.3 0.048 1E-06 35.3 4.8 31 614-644 1-31 (44)
252 COG0457 NrfG FOG: TPR repeat [ 95.2 2.6 5.6E-05 39.3 25.5 195 413-612 61-268 (291)
253 PF04184 ST7: ST7 protein; In 95.2 2.2 4.7E-05 43.5 17.9 16 597-612 363-378 (539)
254 KOG4555 TPR repeat-containing 95.2 0.081 1.8E-06 42.6 6.4 57 587-643 50-106 (175)
255 COG4105 ComL DNA uptake lipopr 95.0 3 6.4E-05 38.7 17.8 58 585-642 172-232 (254)
256 COG4105 ComL DNA uptake lipopr 95.0 3 6.4E-05 38.7 19.2 169 444-614 33-238 (254)
257 PF02259 FAT: FAT domain; Int 95.0 3.3 7.1E-05 41.9 19.8 150 475-627 144-305 (352)
258 KOG2610 Uncharacterized conser 94.9 0.26 5.7E-06 46.7 10.1 116 524-641 115-236 (491)
259 PF13512 TPR_18: Tetratricopep 94.9 0.7 1.5E-05 38.7 11.4 117 482-615 15-134 (142)
260 COG3118 Thioredoxin domain-con 94.8 1.4 3E-05 41.6 14.4 169 463-633 120-291 (304)
261 COG5107 RNA14 Pre-mRNA 3'-end 94.7 5.1 0.00011 40.1 31.1 128 513-642 398-530 (660)
262 smart00299 CLH Clathrin heavy 94.5 2.6 5.7E-05 35.8 15.3 123 482-624 12-135 (140)
263 PF04053 Coatomer_WDAD: Coatom 94.4 1.4 3E-05 45.6 15.0 157 182-370 269-427 (443)
264 KOG2114 Vacuolar assembly/sort 94.3 10 0.00022 41.4 26.7 149 41-198 334-487 (933)
265 KOG2114 Vacuolar assembly/sort 94.1 11 0.00023 41.2 29.2 142 147-297 338-485 (933)
266 PF09613 HrpB1_HrpK: Bacterial 94.0 2 4.3E-05 36.8 12.5 87 522-611 20-108 (160)
267 PF13176 TPR_7: Tetratricopept 94.0 0.11 2.3E-06 31.9 3.9 26 616-641 1-26 (36)
268 PF04184 ST7: ST7 protein; In 94.0 0.91 2E-05 46.0 12.1 149 489-649 180-330 (539)
269 KOG3941 Intermediate in Toll s 93.9 0.44 9.6E-06 44.2 9.0 110 161-270 52-185 (406)
270 PF10345 Cohesin_load: Cohesin 93.9 12 0.00027 41.0 36.2 49 593-641 547-604 (608)
271 PF13181 TPR_8: Tetratricopept 93.8 0.14 3E-06 30.8 4.1 31 582-612 3-33 (34)
272 PF12921 ATP13: Mitochondrial 93.6 0.53 1.2E-05 38.9 8.4 93 42-151 3-96 (126)
273 KOG3941 Intermediate in Toll s 93.6 0.73 1.6E-05 42.8 9.9 99 364-462 53-174 (406)
274 PF10300 DUF3808: Protein of u 93.6 3.9 8.4E-05 43.0 16.8 115 492-608 248-375 (468)
275 PF13176 TPR_7: Tetratricopept 93.6 0.15 3.2E-06 31.2 3.9 28 582-609 1-28 (36)
276 PF04053 Coatomer_WDAD: Coatom 93.4 3.4 7.3E-05 42.8 15.7 157 82-269 271-427 (443)
277 PF09613 HrpB1_HrpK: Bacterial 93.3 0.71 1.5E-05 39.4 8.7 72 559-630 21-94 (160)
278 COG2976 Uncharacterized protei 93.3 4.9 0.00011 35.6 13.8 113 495-611 70-190 (207)
279 KOG1258 mRNA processing protei 93.2 13 0.00027 39.1 29.8 129 71-203 44-180 (577)
280 KOG4648 Uncharacterized conser 93.2 0.31 6.8E-06 46.3 7.0 94 521-617 106-202 (536)
281 KOG4234 TPR repeat-containing 92.8 1.6 3.5E-05 38.4 10.2 99 522-623 105-211 (271)
282 TIGR02561 HrpB1_HrpK type III 92.7 0.87 1.9E-05 38.2 8.1 53 592-644 22-74 (153)
283 KOG4648 Uncharacterized conser 92.6 0.31 6.8E-06 46.3 6.2 88 555-642 104-193 (536)
284 PF07719 TPR_2: Tetratricopept 92.4 0.2 4.4E-06 29.9 3.4 31 614-644 1-31 (34)
285 COG2976 Uncharacterized protei 92.1 4.2 9.1E-05 36.0 11.9 90 554-644 95-189 (207)
286 smart00299 CLH Clathrin heavy 92.0 6.9 0.00015 33.2 15.3 45 177-222 10-54 (140)
287 KOG1920 IkappaB kinase complex 91.9 27 0.00059 39.9 23.1 112 448-576 941-1054(1265)
288 PF00515 TPR_1: Tetratricopept 91.9 0.27 5.8E-06 29.5 3.4 30 615-644 2-31 (34)
289 PF07035 Mic1: Colon cancer-as 91.7 7.7 0.00017 33.8 13.2 136 194-339 14-149 (167)
290 PRK11619 lytic murein transgly 91.4 26 0.00056 38.6 39.5 93 555-647 414-509 (644)
291 KOG1941 Acetylcholine receptor 91.4 1.1 2.3E-05 43.3 8.2 164 479-642 45-234 (518)
292 PF13174 TPR_6: Tetratricopept 91.1 0.49 1.1E-05 27.9 4.0 27 586-612 6-32 (33)
293 PF13170 DUF4003: Protein of u 90.9 13 0.00028 36.2 15.5 133 292-453 79-224 (297)
294 COG4649 Uncharacterized protei 90.8 10 0.00022 32.9 15.3 119 487-608 68-195 (221)
295 PRK10941 hypothetical protein; 90.8 2.4 5.1E-05 40.5 10.1 63 582-644 183-245 (269)
296 COG3629 DnrI DNA-binding trans 90.7 1.3 2.9E-05 42.0 8.2 62 581-642 154-215 (280)
297 KOG1585 Protein required for f 90.6 14 0.0003 34.1 17.7 54 480-534 193-249 (308)
298 PF07035 Mic1: Colon cancer-as 90.1 11 0.00025 32.8 12.7 133 295-439 14-148 (167)
299 PF10602 RPN7: 26S proteasome 90.1 7 0.00015 34.7 12.0 98 479-576 38-141 (177)
300 COG3947 Response regulator con 89.9 18 0.00039 34.3 14.3 61 582-642 281-341 (361)
301 PF13181 TPR_8: Tetratricopept 89.8 0.72 1.6E-05 27.5 4.0 29 615-643 2-30 (34)
302 PF13170 DUF4003: Protein of u 89.8 6.6 0.00014 38.2 12.4 126 190-317 78-224 (297)
303 KOG2066 Vacuolar assembly/sort 89.8 34 0.00074 37.3 25.5 39 559-600 672-710 (846)
304 PF06552 TOM20_plant: Plant sp 89.6 0.75 1.6E-05 40.0 5.1 33 596-628 51-83 (186)
305 COG4649 Uncharacterized protei 89.4 9.5 0.00021 33.0 11.3 128 513-642 60-195 (221)
306 PRK09687 putative lyase; Provi 89.4 22 0.00047 34.5 25.9 134 476-622 141-275 (280)
307 PF13174 TPR_6: Tetratricopept 89.3 0.46 1E-05 28.1 2.8 29 616-644 2-30 (33)
308 PF08631 SPO22: Meiosis protei 89.2 22 0.00048 34.4 21.8 21 621-641 253-273 (278)
309 PF13374 TPR_10: Tetratricopep 89.1 0.66 1.4E-05 29.3 3.7 28 615-642 3-30 (42)
310 PF08631 SPO22: Meiosis protei 88.9 23 0.00051 34.3 25.7 17 590-606 256-272 (278)
311 PRK15180 Vi polysaccharide bio 88.9 6.3 0.00014 39.8 11.5 94 558-651 333-428 (831)
312 PF09205 DUF1955: Domain of un 88.8 12 0.00026 30.8 14.3 140 285-442 12-151 (161)
313 PF07721 TPR_4: Tetratricopept 88.8 0.65 1.4E-05 25.8 2.9 24 615-638 2-25 (26)
314 COG3629 DnrI DNA-binding trans 88.8 3.6 7.9E-05 39.2 9.5 79 478-557 154-236 (280)
315 PF10602 RPN7: 26S proteasome 88.5 8.8 0.00019 34.1 11.4 61 378-438 38-100 (177)
316 PRK09687 putative lyase; Provi 88.4 25 0.00055 34.0 25.1 137 172-320 140-277 (280)
317 KOG1550 Extracellular protein 88.3 42 0.0009 36.4 20.6 148 491-644 378-539 (552)
318 KOG1464 COP9 signalosome, subu 88.3 22 0.00047 33.2 17.4 239 359-603 41-326 (440)
319 KOG1308 Hsp70-interacting prot 88.2 0.32 7E-06 46.5 2.2 89 559-647 125-215 (377)
320 TIGR02561 HrpB1_HrpK type III 87.5 11 0.00025 31.8 10.5 65 524-591 22-88 (153)
321 KOG0890 Protein kinase of the 87.1 92 0.002 39.0 29.7 64 579-644 1669-1732(2382)
322 KOG0403 Neoplastic transformat 86.4 39 0.00085 34.1 16.8 69 349-421 513-584 (645)
323 PF13431 TPR_17: Tetratricopep 86.4 0.62 1.3E-05 28.0 2.0 24 545-568 9-33 (34)
324 PF00637 Clathrin: Region in C 86.3 1 2.3E-05 38.4 4.3 53 181-233 14-66 (143)
325 COG4785 NlpI Lipoprotein NlpI, 86.0 6.1 0.00013 35.5 8.6 110 522-637 75-189 (297)
326 smart00028 TPR Tetratricopepti 86.0 1.5 3.2E-05 25.1 3.8 29 583-611 4-32 (34)
327 KOG4642 Chaperone-dependent E3 85.9 2.2 4.8E-05 38.8 6.0 86 521-609 19-107 (284)
328 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 3.9 8.5E-05 27.6 5.8 35 584-618 5-39 (53)
329 KOG0890 Protein kinase of the 85.4 1.1E+02 0.0024 38.4 33.2 63 548-610 1670-1732(2382)
330 PF00637 Clathrin: Region in C 85.4 1.4 3.1E-05 37.6 4.7 84 114-200 13-96 (143)
331 PF13374 TPR_10: Tetratricopep 85.3 2.3 4.9E-05 26.7 4.5 29 581-609 3-31 (42)
332 PF14561 TPR_20: Tetratricopep 85.0 3.7 8E-05 31.6 6.2 45 600-644 8-52 (90)
333 PF11207 DUF2989: Protein of u 84.4 6.7 0.00015 35.1 8.2 75 559-634 118-198 (203)
334 PF06552 TOM20_plant: Plant sp 84.4 5 0.00011 35.1 7.2 44 596-646 96-139 (186)
335 KOG4507 Uncharacterized conser 84.1 3.4 7.5E-05 42.7 7.1 101 522-625 617-721 (886)
336 PF02284 COX5A: Cytochrome c o 84.1 9 0.00019 29.8 7.6 60 495-556 28-87 (108)
337 KOG4570 Uncharacterized conser 84.0 12 0.00026 35.8 10.0 97 441-541 59-164 (418)
338 PF10345 Cohesin_load: Cohesin 84.0 73 0.0016 35.1 34.0 164 72-237 59-253 (608)
339 TIGR02508 type_III_yscG type I 83.7 13 0.00029 28.7 8.3 86 225-314 21-106 (115)
340 KOG0276 Vesicle coat complex C 83.4 18 0.0004 37.9 11.8 147 459-639 599-746 (794)
341 KOG4570 Uncharacterized conser 83.3 15 0.00033 35.1 10.3 102 238-340 58-165 (418)
342 KOG1550 Extracellular protein 83.2 53 0.0012 35.6 16.3 115 527-647 308-430 (552)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 82.7 9.3 0.0002 29.4 7.1 61 494-556 24-84 (103)
344 KOG1586 Protein required for f 82.5 40 0.00087 31.0 12.9 91 526-616 128-231 (288)
345 KOG1498 26S proteasome regulat 82.3 35 0.00075 33.9 12.6 242 424-697 25-294 (439)
346 KOG2062 26S proteasome regulat 82.0 83 0.0018 34.3 29.4 26 212-237 213-238 (929)
347 COG1747 Uncharacterized N-term 81.9 68 0.0015 33.3 21.9 94 408-505 63-159 (711)
348 PF04097 Nic96: Nup93/Nic96; 81.3 92 0.002 34.3 20.3 46 177-223 114-159 (613)
349 COG4455 ImpE Protein of avirul 81.3 5.8 0.00012 35.7 6.5 64 551-614 4-69 (273)
350 TIGR03504 FimV_Cterm FimV C-te 80.5 3.4 7.4E-05 26.6 3.7 27 618-644 3-29 (44)
351 KOG0551 Hsp90 co-chaperone CNS 79.3 8.5 0.00018 37.1 7.4 92 550-641 83-180 (390)
352 KOG0545 Aryl-hydrocarbon recep 79.3 15 0.00033 33.8 8.5 57 587-643 237-293 (329)
353 smart00028 TPR Tetratricopepti 79.0 3.9 8.5E-05 23.1 3.7 29 615-643 2-30 (34)
354 PF12862 Apc5: Anaphase-promot 77.4 8.5 0.00019 29.9 6.0 53 590-642 8-69 (94)
355 PF14432 DYW_deaminase: DYW fa 77.3 2.3 4.9E-05 34.6 2.8 43 650-701 2-44 (116)
356 smart00386 HAT HAT (Half-A-TPR 77.1 6.2 0.00014 22.8 4.2 30 594-623 1-30 (33)
357 TIGR02508 type_III_yscG type I 77.1 32 0.0007 26.7 8.5 86 123-212 20-105 (115)
358 KOG1586 Protein required for f 77.0 61 0.0013 29.9 16.0 55 590-644 164-225 (288)
359 PF14853 Fis1_TPR_C: Fis1 C-te 76.9 15 0.00032 24.9 6.1 29 615-643 2-30 (53)
360 PF10579 Rapsyn_N: Rapsyn N-te 76.6 6.8 0.00015 28.8 4.6 45 592-636 18-65 (80)
361 PF13762 MNE1: Mitochondrial s 76.5 35 0.00076 28.9 9.5 77 146-222 42-128 (145)
362 PRK12798 chemotaxis protein; R 76.5 92 0.002 31.6 23.9 206 459-691 125-348 (421)
363 KOG4279 Serine/threonine prote 76.1 56 0.0012 35.5 12.7 187 378-616 203-402 (1226)
364 KOG0376 Serine-threonine phosp 75.8 2.3 5E-05 43.0 2.9 101 518-621 10-113 (476)
365 COG0790 FOG: TPR repeat, SEL1 75.6 83 0.0018 30.7 18.7 115 527-645 128-268 (292)
366 cd00923 Cyt_c_Oxidase_Va Cytoc 75.4 21 0.00046 27.5 7.1 47 192-238 25-71 (103)
367 PF02259 FAT: FAT domain; Int 74.8 98 0.0021 31.1 22.0 61 548-608 146-212 (352)
368 PF09670 Cas_Cas02710: CRISPR- 74.6 49 0.0011 33.7 12.1 54 486-540 140-197 (379)
369 KOG0276 Vesicle coat complex C 74.4 32 0.0007 36.2 10.4 103 254-373 647-749 (794)
370 PF07721 TPR_4: Tetratricopept 74.3 6.5 0.00014 21.7 3.3 19 553-571 6-24 (26)
371 PF02284 COX5A: Cytochrome c o 74.0 22 0.00047 27.8 6.9 59 192-251 28-86 (108)
372 PF09477 Type_III_YscG: Bacter 73.6 35 0.00076 26.9 8.0 80 223-305 20-99 (116)
373 PF09986 DUF2225: Uncharacteri 73.2 29 0.00062 32.0 9.1 63 582-644 120-195 (214)
374 COG4976 Predicted methyltransf 73.1 6.7 0.00015 35.6 4.7 56 590-645 5-60 (287)
375 PF11207 DUF2989: Protein of u 72.5 33 0.00071 30.9 8.8 74 494-568 123-198 (203)
376 KOG3364 Membrane protein invol 72.1 17 0.00037 30.0 6.4 72 545-616 29-107 (149)
377 PF07575 Nucleopor_Nup85: Nup8 71.5 1.6E+02 0.0035 32.1 16.7 24 108-132 149-172 (566)
378 COG5159 RPN6 26S proteasome re 71.2 47 0.001 31.5 9.7 24 618-641 129-152 (421)
379 PRK15180 Vi polysaccharide bio 70.5 23 0.0005 36.0 8.2 21 682-702 529-549 (831)
380 PRK10941 hypothetical protein; 69.3 35 0.00075 32.7 9.0 68 551-618 184-253 (269)
381 COG2909 MalT ATP-dependent tra 69.2 2E+02 0.0044 32.4 26.5 215 422-639 426-684 (894)
382 PF07720 TPR_3: Tetratricopept 69.2 21 0.00045 21.8 4.9 29 583-611 4-34 (36)
383 KOG3364 Membrane protein invol 68.7 57 0.0012 27.2 8.6 67 577-643 29-100 (149)
384 PF10579 Rapsyn_N: Rapsyn N-te 68.0 12 0.00025 27.6 4.2 17 525-541 19-35 (80)
385 COG1747 Uncharacterized N-term 68.0 1.6E+02 0.0035 30.8 21.8 93 375-472 65-157 (711)
386 COG3947 Response regulator con 67.8 1.2E+02 0.0026 29.2 14.3 71 278-349 282-357 (361)
387 PF13929 mRNA_stabil: mRNA sta 67.5 1.2E+02 0.0026 29.2 14.0 60 240-299 198-262 (292)
388 KOG2066 Vacuolar assembly/sort 67.2 2.1E+02 0.0045 31.7 25.0 146 48-202 363-533 (846)
389 PRK13800 putative oxidoreducta 66.6 2.6E+02 0.0056 32.7 24.9 184 444-642 696-880 (897)
390 PHA02875 ankyrin repeat protei 66.4 1.7E+02 0.0036 30.4 15.3 147 150-309 72-229 (413)
391 PF04097 Nic96: Nup93/Nic96; 66.2 2.1E+02 0.0046 31.5 25.0 74 45-122 84-159 (613)
392 COG4455 ImpE Protein of avirul 66.0 1.1E+02 0.0023 28.1 11.8 125 480-615 4-140 (273)
393 COG4976 Predicted methyltransf 64.8 9 0.00019 34.8 3.8 55 559-613 6-62 (287)
394 cd00280 TRFH Telomeric Repeat 64.8 36 0.00079 29.9 7.2 44 587-631 118-161 (200)
395 TIGR03504 FimV_Cterm FimV C-te 63.7 17 0.00038 23.4 4.0 25 382-406 5-29 (44)
396 KOG0376 Serine-threonine phosp 63.7 13 0.00029 37.8 5.2 104 484-592 11-117 (476)
397 PF12968 DUF3856: Domain of Un 63.5 59 0.0013 26.3 7.5 60 582-641 57-127 (144)
398 PF08424 NRDE-2: NRDE-2, neces 63.3 1.6E+02 0.0035 29.2 14.8 114 493-610 47-184 (321)
399 PHA02875 ankyrin repeat protei 63.1 1.8E+02 0.0039 30.1 14.0 179 149-344 38-229 (413)
400 COG2909 MalT ATP-dependent tra 62.5 2.7E+02 0.0058 31.4 26.3 85 255-339 426-526 (894)
401 COG5159 RPN6 26S proteasome re 61.7 1.5E+02 0.0033 28.3 19.8 32 282-313 10-41 (421)
402 PRK13800 putative oxidoreducta 60.8 3.3E+02 0.0071 31.9 26.7 155 443-608 725-880 (897)
403 COG2912 Uncharacterized conser 60.8 35 0.00077 32.3 7.1 61 584-644 185-245 (269)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 60.5 84 0.0018 26.0 8.7 43 598-640 81-125 (126)
405 KOG4642 Chaperone-dependent E3 60.4 1E+02 0.0023 28.6 9.6 114 487-605 20-142 (284)
406 KOG3807 Predicted membrane pro 59.2 1.1E+02 0.0024 29.7 10.0 52 483-536 281-335 (556)
407 cd08819 CARD_MDA5_2 Caspase ac 59.1 68 0.0015 24.3 6.9 39 458-497 48-86 (88)
408 KOG2063 Vacuolar assembly/sort 59.0 3.3E+02 0.007 31.2 18.3 286 5-356 456-743 (877)
409 cd08819 CARD_MDA5_2 Caspase ac 58.6 50 0.0011 25.0 6.1 66 127-194 21-86 (88)
410 PF07163 Pex26: Pex26 protein; 56.2 1.2E+02 0.0026 28.9 9.5 85 383-469 90-181 (309)
411 PF13762 MNE1: Mitochondrial s 56.1 1.2E+02 0.0026 25.8 8.8 83 176-258 41-129 (145)
412 KOG3824 Huntingtin interacting 54.5 29 0.00063 33.1 5.4 58 560-617 128-187 (472)
413 PF07163 Pex26: Pex26 protein; 54.0 81 0.0018 30.0 8.1 90 76-166 87-181 (309)
414 PF11846 DUF3366: Domain of un 53.6 41 0.0009 30.4 6.4 35 577-611 141-175 (193)
415 PF14561 TPR_20: Tetratricopep 53.3 1E+02 0.0022 23.7 8.1 53 579-631 21-75 (90)
416 PRK09169 hypothetical protein; 53.0 6.1E+02 0.013 32.6 45.7 366 275-640 246-692 (2316)
417 PRK13342 recombination factor 52.8 2.9E+02 0.0062 28.7 14.6 43 379-421 230-275 (413)
418 PF11846 DUF3366: Domain of un 52.1 52 0.0011 29.7 6.8 34 543-576 139-172 (193)
419 KOG2396 HAT (Half-A-TPR) repea 51.7 3.1E+02 0.0067 28.8 35.2 78 90-170 89-167 (568)
420 KOG4507 Uncharacterized conser 49.7 86 0.0019 33.1 8.2 134 509-645 568-707 (886)
421 KOG4077 Cytochrome c oxidase, 49.4 1.2E+02 0.0026 25.0 7.2 57 497-555 69-125 (149)
422 KOG0530 Protein farnesyltransf 49.0 2.4E+02 0.0052 26.8 15.1 126 564-695 94-222 (318)
423 PF14863 Alkyl_sulf_dimr: Alky 48.7 1E+02 0.0022 26.1 7.3 65 565-632 58-122 (141)
424 KOG2297 Predicted translation 48.6 2.6E+02 0.0057 27.1 11.1 20 377-396 322-341 (412)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 1.6E+02 0.0034 24.4 9.3 43 530-573 81-124 (126)
426 PF10516 SHNi-TPR: SHNi-TPR; 47.5 45 0.00097 20.7 3.7 28 615-642 2-29 (38)
427 PF04190 DUF410: Protein of un 47.2 2.6E+02 0.0057 26.7 17.9 107 257-374 3-119 (260)
428 KOG3824 Huntingtin interacting 47.1 25 0.00055 33.5 3.8 54 522-578 126-181 (472)
429 PF11838 ERAP1_C: ERAP1-like C 47.0 3E+02 0.0064 27.2 18.0 110 528-638 146-261 (324)
430 PF04910 Tcf25: Transcriptiona 46.5 3.3E+02 0.0072 27.6 18.5 53 519-574 110-165 (360)
431 PF10255 Paf67: RNA polymerase 46.4 1.1E+02 0.0024 31.2 8.5 27 614-640 164-190 (404)
432 KOG4567 GTPase-activating prot 46.4 2.3E+02 0.0049 27.5 9.7 79 396-479 263-351 (370)
433 smart00777 Mad3_BUB1_I Mad3/BU 45.7 1.7E+02 0.0038 24.1 8.3 40 599-638 82-123 (125)
434 PF12862 Apc5: Anaphase-promot 45.6 66 0.0014 24.9 5.5 27 584-610 45-71 (94)
435 PF11848 DUF3368: Domain of un 45.3 70 0.0015 21.0 4.7 33 286-318 13-45 (48)
436 KOG2396 HAT (Half-A-TPR) repea 45.0 3.9E+02 0.0085 28.0 35.3 98 545-642 456-558 (568)
437 COG4941 Predicted RNA polymera 44.7 3.2E+02 0.007 27.0 11.8 118 493-615 272-400 (415)
438 cd00280 TRFH Telomeric Repeat 44.5 1.2E+02 0.0025 26.9 7.1 67 528-594 85-157 (200)
439 PF02184 HAT: HAT (Half-A-TPR) 44.2 63 0.0014 19.2 3.7 26 595-621 2-27 (32)
440 PF04781 DUF627: Protein of un 43.9 1.1E+02 0.0025 24.5 6.4 40 597-636 61-100 (111)
441 PF13934 ELYS: Nuclear pore co 43.2 2.8E+02 0.0061 25.8 13.1 106 480-594 79-186 (226)
442 PF07575 Nucleopor_Nup85: Nup8 43.1 2.2E+02 0.0047 31.2 10.9 69 163-233 394-462 (566)
443 KOG1464 COP9 signalosome, subu 43.1 3E+02 0.0065 26.1 17.2 182 388-569 39-252 (440)
444 PF14689 SPOB_a: Sensor_kinase 43.0 54 0.0012 23.0 4.2 27 615-641 24-50 (62)
445 TIGR01503 MthylAspMut_E methyl 42.6 2.4E+02 0.0051 29.3 9.9 48 188-238 68-115 (480)
446 PF09477 Type_III_YscG: Bacter 42.3 1.8E+02 0.0038 23.3 9.1 50 456-507 50-99 (116)
447 PF10366 Vps39_1: Vacuolar sor 41.6 1.8E+02 0.004 23.2 8.0 27 479-505 41-67 (108)
448 PF11848 DUF3368: Domain of un 40.8 95 0.0021 20.4 4.8 29 223-251 16-44 (48)
449 PF10366 Vps39_1: Vacuolar sor 40.3 1.9E+02 0.0042 23.1 7.7 27 378-404 41-67 (108)
450 PRK09857 putative transposase; 40.1 1.5E+02 0.0032 29.0 8.2 64 584-647 210-273 (292)
451 PF14669 Asp_Glu_race_2: Putat 40.0 2.8E+02 0.0061 24.9 14.3 25 315-339 137-161 (233)
452 KOG4077 Cytochrome c oxidase, 39.8 1.6E+02 0.0034 24.3 6.6 45 194-238 69-113 (149)
453 TIGR02710 CRISPR-associated pr 39.1 4.4E+02 0.0094 26.9 11.6 54 484-537 137-196 (380)
454 KOG2297 Predicted translation 38.8 3.8E+02 0.0082 26.1 14.9 18 550-567 323-340 (412)
455 PF04190 DUF410: Protein of un 38.6 3.6E+02 0.0078 25.8 19.8 82 445-541 89-170 (260)
456 KOG2908 26S proteasome regulat 38.2 4.1E+02 0.0089 26.3 10.3 50 524-573 87-140 (380)
457 PF11663 Toxin_YhaV: Toxin wit 38.1 42 0.00091 27.8 3.3 32 186-219 107-138 (140)
458 COG4259 Uncharacterized protei 38.1 1.1E+02 0.0024 23.8 5.2 29 611-639 69-97 (121)
459 PRK10564 maltose regulon perip 38.0 54 0.0012 31.6 4.6 37 176-212 259-295 (303)
460 KOG2659 LisH motif-containing 37.9 3.3E+02 0.0072 25.2 10.9 95 479-576 28-131 (228)
461 KOG4814 Uncharacterized conser 37.6 1.2E+02 0.0027 32.4 7.3 56 553-608 399-456 (872)
462 PF07064 RIC1: RIC1; InterPro 37.4 3.8E+02 0.0081 25.6 15.4 155 74-238 84-249 (258)
463 PF13929 mRNA_stabil: mRNA sta 37.3 3.9E+02 0.0085 25.8 15.1 61 442-502 198-263 (292)
464 PRK13342 recombination factor 37.0 5E+02 0.011 26.9 17.9 99 206-322 173-277 (413)
465 KOG1308 Hsp70-interacting prot 36.3 39 0.00084 33.0 3.3 83 525-610 127-212 (377)
466 COG0790 FOG: TPR repeat, SEL1 36.3 4.1E+02 0.0089 25.7 19.5 147 460-611 91-268 (292)
467 PF10255 Paf67: RNA polymerase 36.1 1.8E+02 0.0038 29.9 8.1 56 348-403 125-191 (404)
468 KOG2581 26S proteasome regulat 35.9 2.9E+02 0.0063 28.0 9.1 136 477-612 124-279 (493)
469 PRK10564 maltose regulon perip 35.6 73 0.0016 30.8 5.0 39 378-416 259-297 (303)
470 KOG0686 COP9 signalosome, subu 34.8 5.1E+02 0.011 26.4 13.7 57 449-505 153-215 (466)
471 PF11817 Foie-gras_1: Foie gra 34.7 1.1E+02 0.0025 28.9 6.4 22 553-574 183-204 (247)
472 PF13934 ELYS: Nuclear pore co 34.3 3.9E+02 0.0084 24.9 11.9 53 451-504 113-167 (226)
473 KOG1524 WD40 repeat-containing 34.0 2.2E+02 0.0048 29.8 8.2 57 549-608 574-630 (737)
474 PHA02537 M terminase endonucle 33.8 4E+02 0.0087 24.9 9.5 34 579-612 168-210 (230)
475 KOG0292 Vesicle coat complex C 33.6 63 0.0014 35.9 4.7 66 524-602 655-720 (1202)
476 PF12583 TPPII_N: Tripeptidyl 33.3 1.9E+02 0.0042 23.9 6.2 42 587-628 83-124 (139)
477 COG5191 Uncharacterized conser 33.2 79 0.0017 30.5 4.7 75 547-621 106-183 (435)
478 PF11768 DUF3312: Protein of u 32.7 6.4E+02 0.014 27.0 11.5 23 451-473 413-435 (545)
479 PF14689 SPOB_a: Sensor_kinase 32.0 54 0.0012 23.0 2.8 23 552-574 27-49 (62)
480 KOG2758 Translation initiation 32.0 5E+02 0.011 25.5 13.5 165 433-609 22-196 (432)
481 PF03745 DUF309: Domain of unk 31.9 1.4E+02 0.0031 20.9 4.8 36 82-118 9-44 (62)
482 cd08326 CARD_CASP9 Caspase act 30.9 1.2E+02 0.0026 23.0 4.6 62 128-193 19-80 (84)
483 PF07064 RIC1: RIC1; InterPro 30.8 4.8E+02 0.01 24.9 15.2 156 175-339 83-249 (258)
484 PF15015 NYD-SP12_N: Spermatog 30.7 1.1E+02 0.0023 31.1 5.3 19 553-571 233-251 (569)
485 PF10373 EST1_DNA_bind: Est1 D 30.5 1.1E+02 0.0024 29.5 5.8 43 599-641 1-43 (278)
486 PF08424 NRDE-2: NRDE-2, neces 30.1 5.6E+02 0.012 25.4 14.5 115 528-645 47-185 (321)
487 PF15297 CKAP2_C: Cytoskeleton 28.8 1.3E+02 0.0029 29.7 5.6 51 597-647 120-173 (353)
488 PF12069 DUF3549: Protein of u 28.7 6E+02 0.013 25.4 11.4 32 207-238 228-259 (340)
489 KOG0991 Replication factor C, 28.4 5E+02 0.011 24.3 12.8 39 473-512 235-273 (333)
490 cd08326 CARD_CASP9 Caspase act 28.4 2.6E+02 0.0057 21.1 6.3 40 457-496 41-80 (84)
491 COG5108 RPO41 Mitochondrial DN 28.1 3E+02 0.0065 29.9 8.2 72 482-557 33-112 (1117)
492 KOG0686 COP9 signalosome, subu 27.8 6.7E+02 0.015 25.6 14.7 57 347-403 152-214 (466)
493 KOG2582 COP9 signalosome, subu 27.6 6.4E+02 0.014 25.3 15.5 125 105-237 72-211 (422)
494 PF11817 Foie-gras_1: Foie gra 27.0 3.9E+02 0.0084 25.3 8.6 57 584-640 182-244 (247)
495 PF09670 Cas_Cas02710: CRISPR- 27.0 7E+02 0.015 25.5 11.1 56 182-238 139-198 (379)
496 KOG0545 Aryl-hydrocarbon recep 26.7 5.5E+02 0.012 24.2 11.7 70 550-619 232-303 (329)
497 COG5108 RPO41 Mitochondrial DN 26.4 2.7E+02 0.0058 30.2 7.5 74 214-287 33-115 (1117)
498 PF04090 RNA_pol_I_TF: RNA pol 26.3 3.5E+02 0.0075 24.6 7.4 62 581-642 42-104 (199)
499 cd02679 MIT_spastin MIT: domai 26.3 50 0.0011 24.6 1.8 42 592-642 20-67 (79)
500 KOG2581 26S proteasome regulat 26.2 7.2E+02 0.016 25.4 14.8 117 458-579 138-279 (493)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-99 Score=850.16 Aligned_cols=686 Identities=34% Similarity=0.596 Sum_probs=662.1
Q ss_pred HHHHHHHHHHhhccCccc-----cccccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcC
Q 005329 11 GRLFASSAIACTERRPLL-----LFQGTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKA 85 (702)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 85 (702)
+.++..++++|++.+... .......+..++..++|+|+.+|++.|+++.|.++|++|++||..+||.+|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 457889999999877641 112222334577889999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHH
Q 005329 86 MDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRV 165 (702)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 165 (702)
|++++|+++|++|... |+.||..||+.++++|+..+++..+.+++..+.+.|+.||+.++|+||.+|++.|++++|.++
T Consensus 166 g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 GYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 9999999999999987 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 005329 166 FDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSF 245 (702)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 245 (702)
|++|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCc
Q 005329 246 VANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLAR 325 (702)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 325 (702)
+|+.|+.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005329 326 IQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRRE 405 (702)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (702)
++.+.++++.+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHH
Q 005329 406 GPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMIN 485 (702)
Q Consensus 406 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 485 (702)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|+.+||++|.
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~ 562 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLT 562 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 005329 486 GYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLS 565 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 565 (702)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.|+++|++.|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999977799999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 566 DAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 566 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+|.+++++|..+|+..+|++|+.+|..+|+.+.++...+++++++|+++..|..|+++|...|+|++|.++++.|.+.|+
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHH---HhcCCCCCCccccC
Q 005329 646 IKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLAS---RESDIDDLDSLVHD 699 (702)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~---~~~~~~~~~~~~~~ 699 (702)
+++||+||+++++++|.|..+|..||+..+||..|..+.. +.|+.|++..++++
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 779 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc
Confidence 9999999999999999999999999999999999998865 45667999988844
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-78 Score=683.98 Aligned_cols=576 Identities=28% Similarity=0.467 Sum_probs=560.6
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHH
Q 005329 69 QRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSA 148 (702)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (702)
.++..++|.++.++++.|++++|..+|+.|.+. |++|+..+|..++++|...+.++.+..++..+.+.+..++...+|+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 457778999999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHH
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFG 228 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 228 (702)
++.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005329 229 REIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKP 308 (702)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (702)
.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+++|..+||++|.+|++.|++++|+++|.+|.+.|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 005329 309 NEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQ 388 (702)
Q Consensus 309 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 388 (702)
|..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++++.+|+++|++++|.++|++|..+|..+||.+|.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005329 389 GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQI 468 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 468 (702)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 005329 469 FYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK 548 (702)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 548 (702)
|++|.++|+.+|+++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+. |+.++.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccc
Confidence 9999999999999999999999999999999999986 59999999999999999999999999999999877 999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhc
Q 005329 549 EHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH-PSCAGTHITLANIYAAK 627 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 627 (702)
.++++|+++|++.|++++|.++|+++ +|+..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 99999999999999999999999999 7899999999999999999999999999999876 33888999999999999
Q ss_pred CChHHHHHHHHHHH-hCCCccCC
Q 005329 628 GRWREAAEVRKMMR-SKGVIKEP 649 (702)
Q Consensus 628 g~~~~A~~~~~~~~-~~~~~~~~ 649 (702)
|++++|.++|+.|. +.|+.|+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999998 57776653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-78 Score=660.59 Aligned_cols=532 Identities=32% Similarity=0.573 Sum_probs=519.8
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 005329 171 LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSK-EQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANS 249 (702)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (702)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHH
Q 005329 250 LATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWG 329 (702)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 329 (702)
|+.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 005329 330 EQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRP 409 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 409 (702)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005329 410 NEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAE 489 (702)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 489 (702)
|..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005329 490 HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAEN 569 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 569 (702)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005329 570 MIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEP 649 (702)
Q Consensus 570 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 649 (702)
++++|..+|+..+|++|+.+|..+|+++.|..+++++++++|++..+|..|+++|.+.|+|++|.++++.|.+.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHH---hcCCCCCCccccCCCC
Q 005329 650 GWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASR---ESDIDDLDSLVHDAED 702 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~ 702 (702)
++||+++++.+|.|.++|..||+..+++..+..+... .|+.|++..+++|++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 9999999999999999999999999999999988664 5667999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-68 Score=582.24 Aligned_cols=529 Identities=16% Similarity=0.232 Sum_probs=480.8
Q ss_pred ccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCCCCc-----chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCC
Q 005329 32 GTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQRDE-----ISWTTLISGYVKAMDSIEALALFSRVWVEPQMNM 106 (702)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 106 (702)
........+.+.|..++..|++.|++++|+++|++|.+++. .+++.++.+|.+.|..++|+.+|+.|. .|
T Consensus 361 ~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~p 435 (1060)
T PLN03218 361 NGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NP 435 (1060)
T ss_pred ccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CC
Confidence 34455566788999999999999999999999999987644 456778888999999999999999996 39
Q ss_pred CHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCC----CCCcchHHHHHH
Q 005329 107 DPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMP----LRNVVSWTAIIT 182 (702)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 182 (702)
|..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 689999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHhhhCCCh
Q 005329 183 GLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLK--RGFDVVSFVANSLATMYSKCGKL 260 (702)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 260 (702)
+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999987 67899999999999999999999
Q ss_pred HHHHHHHhccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 005329 261 DYSLRLFERMST----RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHV 336 (702)
Q Consensus 261 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 336 (702)
++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999974 5779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcC----CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005329 337 LRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGM----IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF 412 (702)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 412 (702)
.+.|+.|+..+|++++.+|++.|++++|.++|++| ..||..+||.||.+|++.|++++|.++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999 46899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 005329 413 AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGY 492 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (702)
||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++++.++.+ ++++|..+.+.+.. |+. .......+.
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w 827 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKW 827 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccch
Confidence 9999999999999999999999999999999999999999976542 45555554433221 110 111112234
Q ss_pred hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005329 493 SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIE 572 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (702)
.+.|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++.+. .++|..+++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 5679999999999999999999999998888889999999999888655 7778899999999988432 468999999
Q ss_pred hCCC
Q 005329 573 NMPH 576 (702)
Q Consensus 573 ~~~~ 576 (702)
+|..
T Consensus 905 em~~ 908 (1060)
T PLN03218 905 EAAS 908 (1060)
T ss_pred HHHH
Confidence 9977
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-67 Score=576.32 Aligned_cols=476 Identities=26% Similarity=0.450 Sum_probs=459.1
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHH
Q 005329 69 QRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSA 148 (702)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (702)
.++..+|+.+|.++.+.|++++|+++|+.|....+..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34677999999999999999999999999987756889999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHH
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFG 228 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 228 (702)
++.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005329 229 REIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKP 308 (702)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (702)
.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 005329 309 NEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQ 388 (702)
Q Consensus 309 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 388 (702)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||.||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005329 389 GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS-IGLERTAMIKSALINMYSKCGSIKEASQ 467 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 467 (702)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHhhCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC
Q 005329 468 IFYETE-SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFV 545 (702)
Q Consensus 468 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 545 (702)
++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.++ |+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999987 68999999999999999999999999999875 4564 568999999999999999999999999877 775
Q ss_pred CC
Q 005329 546 PS 547 (702)
Q Consensus 546 p~ 547 (702)
..
T Consensus 561 k~ 562 (697)
T PLN03081 561 MH 562 (697)
T ss_pred cC
Confidence 43
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-64 Score=556.57 Aligned_cols=504 Identities=15% Similarity=0.203 Sum_probs=460.7
Q ss_pred CCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcC-CCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHH
Q 005329 104 MNMDPFILSLALKACALNVNVNYGESLHGYTVKTGF-VNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIIT 182 (702)
Q Consensus 104 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 182 (702)
-.++...|..++..+.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.||.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356677888888899999999999999999999985 5778888899999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHH
Q 005329 183 GLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDY 262 (702)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 262 (702)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 005329 263 SLRLFERMS----TRDVISWTTIITSYVQMGEEENAFDAFVRMQE--SDVKPNEYTFAAIISASANLARIQWGEQLHAHV 336 (702)
Q Consensus 263 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 336 (702)
|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999995 58999999999999999999999999999976 678999999999999999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005329 337 LRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMI----RRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF 412 (702)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 412 (702)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999994 5688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHHHHHHHHHHHH
Q 005329 413 AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE----SDDIVSWTAMINGYA 488 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 488 (702)
+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 489999999999999
Q ss_pred HcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHhHHhhCCC
Q 005329 489 EHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH----A-------------------GLVDLGFHYFNLMSDKYGFV 545 (702)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~ 545 (702)
+.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCC
Confidence 999999999999999999999999999999876532 1 1236788899999887 999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005329 546 PSKEHYGCMIDLLCRAGRLSDAENMIENMPH---QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 546 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
||..+|+.++.++.+.+..+.+..+++.|.. .|+..+|++++.++... .++|..++++|.+.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999999999888888888999999888865 46788999999987332 368999999998876
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-36 Score=345.30 Aligned_cols=582 Identities=14% Similarity=0.059 Sum_probs=366.5
Q ss_pred HHHHHHccCChHHHHHHhhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCC
Q 005329 47 QLKHLVKSGYLHDARKMFDTMTQ--R-DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVN 123 (702)
Q Consensus 47 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 123 (702)
+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|...++++.... +.+...+..+...+...|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCC
Confidence 33445555666666666555432 1 33345555555666666666666666665332 3344555556666666666
Q ss_pred chhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005329 124 VNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPL---RNVVSWTAIITGLVRAGHNKEGLIYFAEM 200 (702)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 200 (702)
+++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. .+...+..++..+.+.|++++|.++++.+
T Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666666666665543 23344555555556666666666666655432 22334455556666666666666666666
Q ss_pred HHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcch
Q 005329 201 WRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVIS 277 (702)
Q Consensus 201 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 277 (702)
... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+ .+..+
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 543 34455566666666666777777777777666653 33445555666666667777777777666542 24456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 005329 278 WTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSK 357 (702)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (702)
+..+...+.+.|+.++|...++++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|..
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6666666667777777777777766543 3344555566666777777777777777666543 4455666777777777
Q ss_pred cCCHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 005329 358 CGQLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 358 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
.|++++|+..|+.+.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777766532 244566666777777777777777777766532 223556666666777777777777777
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH
Q 005329 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE--SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS 512 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (702)
+.+.+.. +.+...+..+...+.+.|++++|...|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 7766654 3345556666677777777777777777654 2444556666777777777777777777766542 4455
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRAC 590 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~ 590 (702)
..+..+...|...|++++|.++|+++.+. -+++...+..++..+...|+ ++|+.+++++.. +.+...+..++..+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 66666677777777777777777777643 12346666777777777777 667777776655 33455666677777
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 591 MVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-35 Score=341.86 Aligned_cols=621 Identities=12% Similarity=0.066 Sum_probs=354.7
Q ss_pred CchhhhhHHHHHHccCChHHHHHHhhcCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCC-HHHHHHHH
Q 005329 40 STPEVNSQLKHLVKSGYLHDARKMFDTMTQR---DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMD-PFILSLAL 115 (702)
Q Consensus 40 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll 115 (702)
+..++..++..+.+.|++++|...++.+.+. +...+......+...|++++|...|+++... .|+ ...+..+.
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~ 302 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS---APEYLPALLLAG 302 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCchhHHHHHH
Confidence 4455677777777788888888777776432 2222323333445566677777666666543 222 22333334
Q ss_pred HHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHH
Q 005329 116 KACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMP---LRNVVSWTAIITGLVRAGHNKE 192 (702)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 192 (702)
..+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++.+. ..+...++.+...+.+.|++++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44555566666666666555543 2234444455555555555555555555443 1233445555555555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------------
Q 005329 193 GLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRG--------------------------------- 239 (702)
Q Consensus 193 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------------- 239 (702)
|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 555555554431 1123333344444444444444444444444432
Q ss_pred CCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 005329 240 FDVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAI 316 (702)
Q Consensus 240 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 316 (702)
.+++..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 133444555555555555555555555555431 233344445555555555555555555555442 2334445555
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChH
Q 005329 317 ISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEE 393 (702)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 393 (702)
...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|...++.+.. .+...|..+..++...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555566666666655555443 33344455555666666666666666655532 24455666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005329 394 EAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE 473 (702)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 473 (702)
+|...|+.+.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665532 2233445555555666666666666666655533 2234555556666666666666666666554
Q ss_pred C---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhh
Q 005329 474 S---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEH 550 (702)
Q Consensus 474 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 550 (702)
+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 2 24455666666666666666666666666653 344455555666666667777777766666543 2233566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+..++..|.+.|++++|...|+++.. +++..+++.++..+...|+ .+|+..++++++..|+++..+..++.++...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 66667777777777777777777655 3455666777777777777 66777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCccccCC
Q 005329 629 RWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLVHDA 700 (702)
Q Consensus 629 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 700 (702)
++++|.++++++.+.+ |.+.+++..+..+..+.|+..++..++.+|
T Consensus 852 ~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 852 EADRALPLLRKAVNIA--------------------------PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CHHHHHHHHHHHHhhC--------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777776543 456677888888888888776665555433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.3e-26 Score=267.76 Aligned_cols=580 Identities=12% Similarity=0.035 Sum_probs=418.8
Q ss_pred hhhHHHHHHccCChHHHHHHhhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHH---------
Q 005329 44 VNSQLKHLVKSGYLHDARKMFDTMTQ--R-DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFIL--------- 111 (702)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 111 (702)
.-..++.+...++.+.|.+.++++.. | |+..+..++..+.+.|+.++|...+++..+. .|+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHh
Confidence 45566777788888888888887653 3 6667777888888888888888888888755 3332221
Q ss_pred --------HHHHHHhhccCCchhhhHHHHHHHHhcCCCchh-HHHHHHHhhhcCCChhHHHHHhccCCC--C-CcchHHH
Q 005329 112 --------SLALKACALNVNVNYGESLHGYTVKTGFVNSVF-VGSALLDMYTKLGKIELGCRVFDEMPL--R-NVVSWTA 179 (702)
Q Consensus 112 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 179 (702)
..+.+.+...|++++|.+.++.+++.+. |+.. ............|+.++|++.|+++.. | +...+..
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2233456778888888888888876542 3322 111112222345888888888887763 2 4556777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC------------------C--------------CChhhH---------------
Q 005329 180 IITGLVRAGHNKEGLIYFAEMWRSKE------------------Q--------------GDSYTF--------------- 212 (702)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~--------------- 212 (702)
+...+...|++++|+..++++.+... . |+...+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 77888888888888888887754210 0 110000
Q ss_pred ------HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC--CCc---chHHH-
Q 005329 213 ------AIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST--RDV---ISWTT- 280 (702)
Q Consensus 213 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~- 280 (702)
......+...|++++|...|++.++.. +.+...+..+...|.+.|++++|+..|++..+ |+. ..|..
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 011233456788888888888888764 44667778888888888888888888887653 221 11221
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHH
Q 005329 281 -----------IITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVAN 349 (702)
Q Consensus 281 -----------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 349 (702)
....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|+.+.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2345667888888888888888763 3345556667778888888888888888888764 33445556
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCC------------hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 005329 350 SIMAMYSKCGQLTSTSIVFHGMIRRD------------IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRP-NEFAFAS 416 (702)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ 416 (702)
.+...|. .++.++|+..++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 6666664 457788888887764321 123455667788899999999999999885 44 3446667
Q ss_pred HHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CH---------HHHHHH
Q 005329 417 VLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD----DI---------VSWTAM 483 (702)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 483 (702)
+...+.+.|++++|...++.+.+.... +...+..+...+...++.++|...++.+... +. ..+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 778899999999999999998875433 3444444555677889999999999987632 11 122345
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAG 562 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 562 (702)
...+...|++++|.++++. .+++...+..+...+...|++++|++.|+.+.+. .|+ ...+..++.+|...|
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCC
Confidence 6778899999999999872 2455667778888999999999999999999854 565 788899999999999
Q ss_pred CHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHhcCChHHHH
Q 005329 563 RLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA------GTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 563 ~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 634 (702)
++++|.+.++.... .| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|+
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998876 34 566778888899999999999999999999876554 36677899999999999999
Q ss_pred HHHHHHHh
Q 005329 635 EVRKMMRS 642 (702)
Q Consensus 635 ~~~~~~~~ 642 (702)
..++++..
T Consensus 732 ~~y~~Al~ 739 (1157)
T PRK11447 732 ETYKDAMV 739 (1157)
T ss_pred HHHHHHHh
Confidence 99998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3e-24 Score=248.28 Aligned_cols=557 Identities=11% Similarity=0.051 Sum_probs=352.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHH--------
Q 005329 75 WTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVG-------- 146 (702)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 146 (702)
.-..++.....++.+.|.+.++++.... +.|+..+..+...+...|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHh
Confidence 3445556778999999999999998543 446778888889999999999999999999988732 22221
Q ss_pred --------HHHHHhhhcCCChhHHHHHhccCCCCCcchHH--H-HHH-HHHhCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 005329 147 --------SALLDMYTKLGKIELGCRVFDEMPLRNVVSWT--A-IIT-GLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAI 214 (702)
Q Consensus 147 --------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~-li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 214 (702)
..+...+.+.|++++|...|+.....++.... . ... .....|++++|++.|+++.+.. +-+...+..
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 22334678899999999999987643222211 1 111 1224599999999999998863 335556777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCC----------------Cch---hHHH---------------------------
Q 005329 215 VLKASADSGALNFGREIHTIMLKRGFD----------------VVS---FVAN--------------------------- 248 (702)
Q Consensus 215 ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~---~~~~--------------------------- 248 (702)
+...+...|+.++|.+.++++.+.... ++. ..+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 888888999999999999988653210 000 0011
Q ss_pred -------HHHHHhhhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhH----
Q 005329 249 -------SLATMYSKCGKLDYSLRLFERMST--R-DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKP-NEYTF---- 313 (702)
Q Consensus 249 -------~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~---- 313 (702)
.....+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 112233445556666666655432 2 44455555556666666666666666655432111 00001
Q ss_pred --------HHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHH
Q 005329 314 --------AAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR--R-DIISWSTI 382 (702)
Q Consensus 314 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 382 (702)
......+.+.|++++|...|+.+.+.. +.+...+..+...+...|++++|++.|+++.+ | +...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 011223445566666666666655543 23344445555566666666666666655532 1 23344444
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005329 383 IGGYSQGGYEEEAFEYLALMRREGPR--------PNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
...|. .++.++|+.+++.+...... .....+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44443 33455555555443221000 00112233444555667777777777777765432 4455566777
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH---------HHHHHHHHH
Q 005329 455 MYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV---------TFMGVLTAC 522 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~ 522 (702)
.|.+.|++++|...|+++. ..+...+..+...+...++.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 7777777777777777653 2244455555555666777777777777665432222221 122345566
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 005329 523 SHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
...|+.++|.++++. .+++...+..+...+.+.|++++|+..|+++.. +.+...+..++..+...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 777888888877761 133466677788888999999999999988876 345778888888898999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 601 HTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+.++++.+..|+++..+..++.++...|++++|.++++++.+..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999888888888888889999999999999999998887654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.9e-23 Score=228.66 Aligned_cols=570 Identities=10% Similarity=-0.014 Sum_probs=405.0
Q ss_pred hhhHHHHH--HccCChHHHHHHhhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHh
Q 005329 44 VNSQLKHL--VKSGYLHDARKMFDTMTQ--R-DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKAC 118 (702)
Q Consensus 44 ~~~l~~~~--~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 118 (702)
+-.+..++ ...|++++|...|+...+ | +..++..+.+.|...|++++|+..+++.... .|+...|..++...
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh
Confidence 33344443 344999999999999875 3 5667899999999999999999999999855 55555554444333
Q ss_pred hccCCchhhhHHHHHHHHhcCCCchhHHHHHHHh--------hhcCCChhHHHHHhccCCCCC--cchHHHH-HHHHHhC
Q 005329 119 ALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDM--------YTKLGKIELGCRVFDEMPLRN--VVSWTAI-ITGLVRA 187 (702)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~ 187 (702)
++..+|..+++++++..+ -+..++..+... |.+.+...++++ . ....|+ ....... .+.|.+.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHH
Confidence 888999999999999863 344555555554 777777777776 3 333343 4434444 8999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHH
Q 005329 188 GHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASAD-SGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRL 266 (702)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 266 (702)
|++++|++++.++.+.+. .+..-...+-.++.. .++ +.+..+++. .+..+......+...|.+.|+.++|.++
T Consensus 196 ~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998753 334445556667766 366 777777543 3346788889999999999999999999
Q ss_pred HhccCC-----CCcchHH------------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005329 267 FERMST-----RDVISWT------------------------------TIITSYVQMGEEENAFDAFVRMQESDVKPNEY 311 (702)
Q Consensus 267 ~~~~~~-----~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (702)
+++++. |+..+|- .++..+.+.++++.+.++. .+.|...
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 343 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANE 343 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcch
Confidence 998862 2222211 1244555566666444331 1334433
Q ss_pred hHHHHHHHHH--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----ChhhHHHHH
Q 005329 312 TFAAIISASA--NLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR-R-----DIISWSTII 383 (702)
Q Consensus 312 t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li 383 (702)
. ..+.... ..+...++.+.+..+.+.. +-+....--+.-...+.|+.++|..+|+.... + +.....-++
T Consensus 344 ~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 2 2333222 3355666666666666542 23444444455556788999999999988744 2 223344667
Q ss_pred HHHHcCCC---hHHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHcccCcHHHHHHHH
Q 005329 384 GGYSQGGY---EEEAFEY----------------------LALMRR-EGP-RP--NEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 384 ~~~~~~g~---~~~a~~~----------------------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
..|.+.+. ..++..+ +..... .+. ++ +...+..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77776655 3333333 111111 112 22 45556666655555 7888899987
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH
Q 005329 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS 512 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (702)
....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. +++.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 7777655 4433333445555789999999999997663 445567777888999999999999999998754 3333
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRAC 590 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~ 590 (702)
..+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|++++|...+++... .| +...+..+..++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444444555667999999999999984 578888999999999999999999999999888 44 567888899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 591 MVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
...|++++|+..++++++.+|+++..+..++.++...|++++|+..++++.+..
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=5.3e-22 Score=218.73 Aligned_cols=580 Identities=9% Similarity=0.014 Sum_probs=410.9
Q ss_pred CchhhhhHHHHHHccCChHHHHHHhhcCCCCCc--chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 005329 40 STPEVNSQLKHLVKSGYLHDARKMFDTMTQRDE--ISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKA 117 (702)
Q Consensus 40 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 117 (702)
+..++..|.+.|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..+|+++.... +-+..++..+...
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~ 151 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRCRS 151 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC--CCChhHHHHHHHH
Confidence 467789999999999999999999999876432 3333334333 88999999999998663 2233344444333
Q ss_pred h-----hccCCchhhhHHHHHHHHhcCCCchhHHHHH-HHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHhC-
Q 005329 118 C-----ALNVNVNYGESLHGYTVKTGFVNSVFVGSAL-LDMYTKLGKIELGCRVFDEMPLR---NVVSWTAIITGLVRA- 187 (702)
Q Consensus 118 ~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~- 187 (702)
. ......+++.+.++ .......|+..+.... ...|.+.|++++|+.++.++.+. +......|-..|...
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 0 11223366666666 3334444455555555 78899999999999999888642 233355566677763
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHH-------------------
Q 005329 188 GHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFD-VVSFVA------------------- 247 (702)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------------- 247 (702)
++ +.+..+++. .++-|......+...+.+.|+.++|.++++++...... |...++
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 66 777777543 24457778888888899999999999888877543211 222221
Q ss_pred -----------HHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 005329 248 -----------NSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSY--VQMGEEENAFDAFVRMQESDVKPNEYTFA 314 (702)
Q Consensus 248 -----------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 314 (702)
-.++..+.+.++++.++++.. ....+. . ..+... ...+...++.+.+..|.+.. +-+....-
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~ 380 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLD 380 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHH
Confidence 122556667777777776643 221222 1 233222 23356667777777776652 22444444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHhcCC---HHHHHHH----------------------
Q 005329 315 AIISASANLARIQWGEQLHAHVLRL-G-LVDSLSVANSIMAMYSKCGQ---LTSTSIV---------------------- 367 (702)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~---------------------- 367 (702)
.+--.....|+.++|.+++...... + -..+.....-++..|.+.+. ..++..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 4444566788999999999988763 1 22345566677888887766 3333333
Q ss_pred ---HhcCC---CC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH
Q 005329 368 ---FHGMI---RR--DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS 439 (702)
Q Consensus 368 ---~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (702)
+.... .. +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|+++.|...++.+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11111 12 45677778877776 8999999988888764 46655544455566789999999999998765
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHH
Q 005329 440 IGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDI---VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFM 516 (702)
Q Consensus 440 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 516 (702)
. +|+...+..+...+.+.|++++|...|++..+.++ ..+..+...+...|++++|...+++..+. .|+...+.
T Consensus 538 ~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 538 H--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred c--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4 33344456677888999999999999998775332 23333334444569999999999999874 67788899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 005329 517 GVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQ 593 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~ 593 (702)
.+...+.+.|++++|...+++... +.|+ ...+..+..++...|++++|+..++++.. .| +...+..+..++...
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999984 4776 77888999999999999999999999877 44 677999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
|++++|+..+++++++.|++..+....+++..+..+++.|.+-++....-.+
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999998887765443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.7e-21 Score=187.62 Aligned_cols=443 Identities=13% Similarity=0.145 Sum_probs=342.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 005329 177 WTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSK 256 (702)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 256 (702)
-..|..-..+.|++++|.+.-...-... +.+......+-..+.+..+.+...+.-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455556667788888877655443321 2222233333333444455554444333333332 4456678888888888
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCchHHHHHH
Q 005329 257 CGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAA-IISASANLARIQWGEQL 332 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~ 332 (702)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+ +-..+-..|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 8999999988887764 25678888888999999999999988888764 455444333 33334457888888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 005329 333 HAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRP 409 (702)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 409 (702)
|-+.++... -=...|+.|...+-..|+...|+..|++...-| ..+|-.|...|...+.+++|...+.+... ..|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCC
Confidence 887777542 224567778888888999999999999886544 34788899999999999999999988876 456
Q ss_pred CH-HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHH
Q 005329 410 NE-FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMIN 485 (702)
Q Consensus 410 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 485 (702)
+. ..+..+...|...|.++.|+..+++.++.... -+..|+.|..++...|++.+|.+.|.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 54 46667777788899999999999998876532 356788999999999999999999998763 45678899999
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCC
Q 005329 486 GYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGR 563 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 563 (702)
.|...|.+++|..+|.+..+ +.|.- ..++.|...|-+.|++++|+..|++.. .+.|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999886 56655 578999999999999999999999987 68998 8899999999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005329 564 LSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 564 ~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
.+.|.+.+.++.. .| -....+.|...|...|+..+|+..|+.++++.|+.+..|.+++.++---.+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999877 55 467899999999999999999999999999999999999999888765555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.2e-22 Score=192.97 Aligned_cols=420 Identities=14% Similarity=0.151 Sum_probs=338.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCC
Q 005329 214 IVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGE 290 (702)
Q Consensus 214 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 290 (702)
.+..-..+.|++++|++.-..+-..+ +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444567789999888776665543 22222222333455555555554332222221 245689999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhcCCHHHHHHHHh
Q 005329 291 EENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSV-ANSIMAMYSKCGQLTSTSIVFH 369 (702)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~ 369 (702)
+++|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++.+|...+.
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999999863 235678888999999999999999999998875 454443 3445666667899999999998
Q ss_pred cCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCC
Q 005329 370 GMIRRD---IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNE-FAFASVLSVCGNMAILEQGKQIHAHVMSIGLERT 445 (702)
Q Consensus 370 ~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (702)
+.++.+ .++|+.|...+-.+|+...|+..|++..+ +.|+. ..|..+-..+...+.++.|...+..+..... ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cc
Confidence 875543 35899999999999999999999999987 45553 3777888888888889999888877766442 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHH
Q 005329 446 AMIKSALINMYSKCGSIKEASQIFYETES--D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTA 521 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 521 (702)
...+..+...|-.+|.++-|+..|++..+ | -+..|+.|..++...|+..+|...|.+... +.|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 45566677788899999999999998763 3 467999999999999999999999999887 45655 588899999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~ 598 (702)
+...|+++.|..+|.... .+.|. ...++.|...|-.+|++++|+..++++.. +|. ..+++.++..|-..|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 56787 77899999999999999999999999988 665 6799999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
|.+.+.+++..+|.-++.+.+|+.+|..+|+..+|+.-++...+..+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999887543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.5e-18 Score=173.69 Aligned_cols=577 Identities=15% Similarity=0.091 Sum_probs=414.6
Q ss_pred hHHHHHHhhcCCCCCcc-hHHHHHHH--HHcCCChhHHHHHHHHhhhC-CCCCCCHHHHHHHHHHhhccCCchhhhHHHH
Q 005329 57 LHDARKMFDTMTQRDEI-SWTTLISG--YVKAMDSIEALALFSRVWVE-PQMNMDPFILSLALKACALNVNVNYGESLHG 132 (702)
Q Consensus 57 ~~~A~~~~~~~~~~~~~-~~~~ll~~--~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (702)
++.|.+.|..+.+.++. ..-.+.++ ....+++..|+.+|+..... +..+||+.+ .+..++++.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 68899999887654222 23333444 34678999999999996533 345666543 33467889999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHhhhcC---CChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005329 133 YTVKTGFVNSVFVGSALLDMYTKL---GKIELGCRVFDEMP---LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQ 206 (702)
Q Consensus 133 ~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 206 (702)
+..+..+ -++.++-.|--.-... ..+..+..++...- ..|+..-+.|...|.-.|++..++.+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9988763 2333333222221222 33555666655432 468889999999999999999999999998764311
Q ss_pred --CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhhCCChHHHHHHHhccCC--C-CcchHH
Q 005329 207 --GDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSF--VANSLATMYSKCGKLDYSLRLFERMST--R-DVISWT 279 (702)
Q Consensus 207 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 279 (702)
.-...|-.+.+++-..|++++|..+|.+..+.. ++.+ .+--|..+|.+.|+++.+...|+.+.+ | +..+.-
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 122357778889999999999999998888764 4443 344577999999999999999999864 3 445555
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHH----HHhCCCCchHHHHHH
Q 005329 280 TIITSYVQMG----EEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHV----LRLGLVDSLSVANSI 351 (702)
Q Consensus 280 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l 351 (702)
.|...|...+ ..+.|..++.+..+.- +.|...|..+...+-. ++...+..+|..+ ...+..+.+.+.|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 6666666664 4566777766666542 4455566555555544 3444446655544 455667888999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-------Ch------hhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 005329 352 MAMYSKCGQLTSTSIVFHGMIRR-------DI------ISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF-AFASV 417 (702)
Q Consensus 352 ~~~~~~~g~~~~a~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l 417 (702)
...+...|++.+|...|++.... |. .+--.+...+-..++++.|.+.|..+.+. .|+-. .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999876222 22 12233566666778999999999999874 45443 44444
Q ss_pred HHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHHHHHHHHHHHHH---
Q 005329 418 LSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE-----SDDIVSWTAMINGYAE--- 489 (702)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~--- 489 (702)
.......+...+|...+....... ..++..++.+.+.+.+...+..|..-|..+. .+|+.+.-+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 433334467778888777776543 3345556667778998888888888665543 2466666666665532
Q ss_pred ---------cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh
Q 005329 490 ---------HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR 560 (702)
Q Consensus 490 ---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 560 (702)
.+..++|+++|.+..... +-|...-+.+...++..|++..|..+|.+..+.. .-...+|-.+.++|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHH
Confidence 345778999999888753 4566777888888999999999999999998762 2356788899999999
Q ss_pred cCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc---------
Q 005329 561 AGRLSDAENMIENMPH----QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK--------- 627 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------- 627 (702)
.|++-.|+++|+...+ +.+......|..++...|++.+|.+.+..+..+.|.++....+++.+..+.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 9999999999998766 457889999999999999999999999999999999999888888776654
Q ss_pred ----------CChHHHHHHHHHHHhCCCc
Q 005329 628 ----------GRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 628 ----------g~~~~A~~~~~~~~~~~~~ 646 (702)
+..++|.++|..+...+-.
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566778888888776543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.5e-18 Score=188.77 Aligned_cols=418 Identities=13% Similarity=0.024 Sum_probs=266.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 005329 177 WTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSK 256 (702)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 256 (702)
+......+.+.|++++|++.|++.++ +.|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677778888888888888765 45666677777777777788888877777777664 3345566666677777
Q ss_pred CCChHHHHHHHhccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHH
Q 005329 257 CGKLDYSLRLFERMSTRD---VISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLH 333 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 333 (702)
.|++++|...|..+...+ ......++..+.. ..+........+.. +++...+..+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~---------------- 265 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG---------------- 265 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH----------------
Confidence 777777766554432111 1111111111111 11112222221111 11111111111
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHH---HHcCCChHHHHHHHHHHHHCC-
Q 005329 334 AHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGG---YSQGGYEEEAFEYLALMRREG- 406 (702)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g- 406 (702)
. |...........-+....+.+ ...+..+... ....+++++|.+.|+...+.+
T Consensus 266 -------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 266 -------------------N-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred -------------------H-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 1 111001111111111110000 0111111111 122456777777777777654
Q ss_pred CCCC-HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHH
Q 005329 407 PRPN-EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTA 482 (702)
Q Consensus 407 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 482 (702)
..|+ ...+..+...+...|+++.|...++...+... .....+..+...+...|++++|...|++.. ..+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2332 33455555666677888888888777776532 234466667778888888888888888764 346778888
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhc
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRA 561 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 561 (702)
+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|+...+. .|+ ...+..+..++...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 9999999999999999999988752 334567777888889999999999999998754 455 78888999999999
Q ss_pred CCHHHHHHHHHhCCC-CCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005329 562 GRLSDAENMIENMPH-QKD-DV-------VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 562 g~~~~A~~~~~~~~~-~p~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
|++++|+..|++... .|. .. .++..+..+...|++++|...++++++++|++...+..++.++.+.|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 999999999998766 332 11 112222233457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 005329 633 AAEVRKMMRSK 643 (702)
Q Consensus 633 A~~~~~~~~~~ 643 (702)
|+.+++++.+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.6e-17 Score=171.33 Aligned_cols=423 Identities=13% Similarity=0.093 Sum_probs=232.1
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHhhhCCChHHHHHHHhccCC--CC--cchHHHH
Q 005329 208 DSYTFAIVLKASADSGALNFGREIHTIMLKRGFD--VVSFVANSLATMYSKCGKLDYSLRLFERMST--RD--VISWTTI 281 (702)
Q Consensus 208 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l 281 (702)
|+...+.|-..+.-.|+++.+..+...+...... .-...|--+.++|-..|++++|...|.+..+ +| +..+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4444455555555555555555555555543211 1112244455555555555555555554432 11 1222334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 005329 282 ITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLA----RIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSK 357 (702)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (702)
...|...|+.+.+...|+...+.. +-+..|...+...|+..+ ..+.|..++....+.- +.|...|-.+...|..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 455555555555555555555431 223344444444444443 2333333333333322 3344444444444433
Q ss_pred cCCHHHHHHHHhcC--------CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCCHH------HHHHHHHH
Q 005329 358 CGQLTSTSIVFHGM--------IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRRE---GPRPNEF------AFASVLSV 420 (702)
Q Consensus 358 ~g~~~~a~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~------~~~~ll~~ 420 (702)
.+-+. ++..|... ....+...|.+...+...|.+.+|...|...... ...+|.. +--.+...
T Consensus 427 ~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22221 12222221 1234445566666666666666666666655443 1222221 11112233
Q ss_pred HcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-------CCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHc
Q 005329 421 CGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKC-------GSIKEASQIFYETE---SDDIVSWTAMINGYAEH 490 (702)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 490 (702)
.-..++.+.|.+.+..+.+..+. .|++|.+. +...+|...++... +.++..+.-+...+...
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~--------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG--------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch--------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 33445566666666665553321 33333333 45556666666554 24556666666666666
Q ss_pred CChHHHHHHHHHchhC-CCCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHH
Q 005329 491 GYSQEAIHLFEKVPMV-GLRPDSVTFMGVLTACSHA------------GLVDLGFHYFNLMSDKYGFVP-SKEHYGCMID 556 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 556 (702)
..+..|.+-|....+. ...+|......|.+.|... +..++|+++|.+..+ ..| |...-+-++-
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGI 654 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhh
Confidence 6666666655544432 1235555555666654321 345677777777763 244 4666677888
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHH
Q 005329 557 LLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH--PSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
+++..|++.+|..+|....+ .....+|-.++..|...|++..|+++|+..+... .+++.+...|+.++.+.|++.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 88888888888888887766 3456688888888888888888888888888765 4567788888888888888888
Q ss_pred HHHHHHHHHhCC
Q 005329 633 AAEVRKMMRSKG 644 (702)
Q Consensus 633 A~~~~~~~~~~~ 644 (702)
|.+.+..+....
T Consensus 735 ak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 735 AKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhC
Confidence 888887766543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.7e-19 Score=182.07 Aligned_cols=292 Identities=13% Similarity=0.133 Sum_probs=197.2
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhhHHHHHHHHHcCCCh
Q 005329 320 SANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRD-------IISWSTIIGGYSQGGYE 392 (702)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~ 392 (702)
+...|+++.|...|..+.+.+ +.+..++..+...+...|++++|..+++.+.... ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666543 2334455555555555555555555555543211 12344455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 005329 393 EEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYET 472 (702)
Q Consensus 393 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 472 (702)
++|..+|+++.+.. +++..+ +..++..+.+.|++++|.+.++.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~-----------------------------------~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGA-----------------------------------LQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHH-----------------------------------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 55555555554431 123334 444455555555555555555544
Q ss_pred CCC--C------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC
Q 005329 473 ESD--D------IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGF 544 (702)
Q Consensus 473 ~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (702)
.+. + ...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++|+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 321 0 1234567777888899999999999888643 334557777888899999999999999998754
Q ss_pred CCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005329 545 VPS--KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 545 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
.|+ ...+..++.+|...|++++|...++++.. .|+...+..++..+.+.|++++|...++++++..|++. .+..+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 444 45678889999999999999999999877 67777778899999999999999999999999999766 444444
Q ss_pred HHHHh---cCChHHHHHHHHHHHhCCCccCCeeeE
Q 005329 622 NIYAA---KGRWREAAEVRKMMRSKGVIKEPGWSR 653 (702)
Q Consensus 622 ~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 653 (702)
..+.. .|+.++|..++++|.+++++++|.+..
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 44443 569999999999999999988887543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.6e-17 Score=178.31 Aligned_cols=350 Identities=10% Similarity=0.021 Sum_probs=265.4
Q ss_pred hCCChHHHHHHHhccCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHH
Q 005329 256 KCGKLDYSLRLFERMSTR------DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWG 329 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 329 (702)
+..+++.-.-.|..-++. +......++..+.+.|++++|..+++........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 445555555555544421 23344556677888899999999988888764332 33444455666678899999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005329 330 EQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR--R-DIISWSTIIGGYSQGGYEEEAFEYLALMRREG 406 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 406 (702)
...++.+.+.. +.+...+..+...+...|++++|+..+++... | +...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99998888764 44566777888888899999999999888743 3 56678888889999999999999998887654
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHH
Q 005329 407 PRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAM 483 (702)
Q Consensus 407 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 483 (702)
..+.. .+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...|++... .+...+..+
T Consensus 175 P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33322 22222 34677899999999988887765444455555567788899999999999988663 467788889
Q ss_pred HHHHHHcCChHH----HHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 005329 484 INGYAEHGYSQE----AIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDL 557 (702)
Q Consensus 484 i~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 557 (702)
...+...|++++ |...|++..+. .| +...+..+...+...|++++|...++++.+. .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 79999998874 45 4568888999999999999999999998754 565 6677788999
Q ss_pred HHhcCCHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 558 LCRAGRLSDAENMIENMPH-QKDDVV-WSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~-~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
+.+.|++++|...++++.. .|+... +..++.++...|+.++|...|+++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999998876 565443 44457778899999999999999999998764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.1e-16 Score=175.14 Aligned_cols=390 Identities=7% Similarity=0.007 Sum_probs=184.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC---CCCcchHHHHHHHHHhcCChh
Q 005329 216 LKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS---TRDVISWTTIITSYVQMGEEE 292 (702)
Q Consensus 216 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 292 (702)
+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++.. ..+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333344444444444444444311 2223334444444555555555555554432 112333444445555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 005329 293 NAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMI 372 (702)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 372 (702)
+|+..+++..+.. +.+.. +..+...+...|+.++|...++.+.+.. +.+...+..+...+...+..++|++.++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 5555555555441 12222 4444445555555555555555555543 2233333445555555566666666665554
Q ss_pred CCChh--------hHHHHHHHHH-----cCCCh---HHHHHHHHHHHHC-CCCCCHH-HHHHHHHHHcccCcHHHHHHHH
Q 005329 373 RRDII--------SWSTIIGGYS-----QGGYE---EEAFEYLALMRRE-GPRPNEF-AFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 373 ~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
. ++. ....++.... ..+++ ++|+..++.+.+. ...|+.. .+...
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a----------------- 239 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA----------------- 239 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-----------------
Confidence 3 110 1111111111 11222 4555555555532 1122111 11000
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---H-HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC
Q 005329 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDD---I-VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP 510 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 510 (702)
....+..+...|++++|+..|+.+.+.+ + .....+..+|...|++++|+..|+++.+.. |
T Consensus 240 --------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p 303 (765)
T PRK10049 240 --------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--E 303 (765)
T ss_pred --------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--C
Confidence 0000112223344555555555444211 1 011113444555555555555555544321 1
Q ss_pred C-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh----------CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005329 511 D-----SVTFMGVLTACSHAGLVDLGFHYFNLMSDKY----------GFVPS---KEHYGCMIDLLCRAGRLSDAENMIE 572 (702)
Q Consensus 511 ~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (702)
. ......+..++...|++++|.++++.+.+.. .-.|+ ...+..++..+...|++++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1223334444555555555555555554321 01123 2234455566666667777776666
Q ss_pred hCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 573 NMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 573 ~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++.. +.+...+..++..+...|++++|++.++++++++|++...+..++.++...|++++|..+++.+.+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6555 3345566666666666677777777777777777766666666666666777777777666666654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.1e-17 Score=178.35 Aligned_cols=372 Identities=10% Similarity=0.067 Sum_probs=258.6
Q ss_pred CCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 005329 241 DVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAII 317 (702)
Q Consensus 241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 317 (702)
+.+.....-.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++..+.. +.+......+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44555556667777888899999988888763 233457888888889999999999999887752 33445566677
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChHH
Q 005329 318 SASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR--R-DIISWSTIIGGYSQGGYEEE 394 (702)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 394 (702)
..+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77888888888888888888763 44445 77778888888888888888888743 2 44556667777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---HHHHHHHhh
Q 005329 395 AFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSI---KEASQIFYE 471 (702)
Q Consensus 395 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 471 (702)
|+..++.... .|+.... +. ...+.. ..+. .+.......+++ ++|++.++.
T Consensus 169 Al~~l~~~~~---~p~~~~~---l~-------~~~~~~----~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRD---LE-------ADAAAE----LVRL----------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHHHH---HH-------HHHHHH----HHHh----------hcccccChhHHHHHHHHHHHHHHH
Confidence 8887765543 3321000 00 000000 0000 000011112223 555555555
Q ss_pred CCC-----CCHH-----HHHHHHHHHHHcCChHHHHHHHHHchhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005329 472 TES-----DDIV-----SWTAMINGYAEHGYSQEAIHLFEKVPMVGLR-PDSVTFMGVLTACSHAGLVDLGFHYFNLMSD 540 (702)
Q Consensus 472 ~~~-----~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 540 (702)
+.+ |+.. .....+..+...|++++|+..|+++.+.+-+ |+. ....+..++...|++++|+..|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 441 2111 1111133456779999999999999986532 332 222256788999999999999999875
Q ss_pred hhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-------------C---HHHHHHHHHHHHhcCCHHH
Q 005329 541 KYGFVPS-----KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-------------D---DVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 541 ~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-------------~---~~~~~~l~~~~~~~g~~~~ 598 (702)
. .|. ......+..++...|++++|...++.+.. .| + ...+..+...+...|+.++
T Consensus 301 ~---~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 301 H---PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred c---CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 4 332 34567778889999999999999998876 23 2 2345667778889999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
|++.++++++..|.++..+..++.++...|++++|++.++++.+..+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999886543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.1e-16 Score=174.24 Aligned_cols=428 Identities=11% Similarity=-0.004 Sum_probs=261.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHhccCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 005329 145 VGSALLDMYTKLGKIELGCRVFDEMP--LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADS 222 (702)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 222 (702)
.+......|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 35566778889999999999999865 5777889999999999999999999999998753 23455788888999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005329 223 GALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (702)
|++++|...+..+...+...+.. ...++..+........+...++.-+ ++...+..+.. |...........-+..-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999999888776654222222 2222222222112233444443322 23333433322 322222222222222111
Q ss_pred HCCCCCCh-hhHHHHHHH---HHccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 005329 303 ESDVKPNE-YTFAAIISA---SANLARIQWGEQLHAHVLRLG-LVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDII 377 (702)
Q Consensus 303 ~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 377 (702)
+ ..++. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~a~ 332 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------EAI 332 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------hHH
Confidence 1 11111 111111100 112345556666665555443 1111 122
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN-EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMY 456 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 456 (702)
.|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444455555555555555555442 232 2244444445555555555555555554442 22345556667777
Q ss_pred HhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 005329 457 SKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFH 533 (702)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 533 (702)
...|++++|...|++... .+...+..+..++.+.|++++|+..|++.... .+.+...++.+...+...|++++|++
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 777778878777776652 35567777888888889999999999888764 23345678888888888999999999
Q ss_pred HHHHhHHhhCCCCCh-hh-------HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005329 534 YFNLMSDKYGFVPSK-EH-------YGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTA 603 (702)
Q Consensus 534 ~~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (702)
.|+...+ +.|+. .. ++.....+...|++++|..++++... .| +...+..++..+...|++++|+..|
T Consensus 489 ~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 489 KFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9988764 34431 11 11222234446899999999988755 44 4557888999999999999999999
Q ss_pred HHHHHhCCCCch
Q 005329 604 EKILELHPSCAG 615 (702)
Q Consensus 604 ~~~~~~~p~~~~ 615 (702)
+++.++.+....
T Consensus 566 e~A~~l~~~~~e 577 (615)
T TIGR00990 566 ERAAELARTEGE 577 (615)
T ss_pred HHHHHHhccHHH
Confidence 999998775443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.2e-17 Score=175.93 Aligned_cols=353 Identities=12% Similarity=-0.023 Sum_probs=280.5
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005329 285 YVQMGEEENAFDAFVRMQESD--VKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLT 362 (702)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 362 (702)
+.+..+|+.-.-.|..-.++- -.-+......++..+.+.|+++.|..++.........+ ......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 345566665555554433221 11233445667788899999999999999999876544 444445557777899999
Q ss_pred HHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCcHHHHHHHHHHHH
Q 005329 363 STSIVFHGMIR--R-DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN-EFAFASVLSVCGNMAILEQGKQIHAHVM 438 (702)
Q Consensus 363 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (702)
+|+..|+++.. | +...+..+...+...|++++|...++++.+. .|+ ...+..+...+...|+.+.|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999843 3 5668888999999999999999999999874 444 5567778889999999999999999887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHH
Q 005329 439 SIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVT 514 (702)
Q Consensus 439 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 514 (702)
.....+....+. + ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 766544333333 3 3478899999999999986642 33344556778899999999999999998753 345567
Q ss_pred HHHHHHHHhccCcHHH----HHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 005329 515 FMGVLTACSHAGLVDL----GFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLL 587 (702)
Q Consensus 515 ~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~ 587 (702)
+..+...+...|++++ |...|+++.+ +.|+ ...+..++..+.+.|++++|...++++.. .| +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888999999999986 8999999874 4676 77889999999999999999999999877 44 466788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005329 588 RACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
.++...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999988877777899999999999999999998876543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.5e-17 Score=172.05 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=231.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHh
Q 005329 281 IITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDS---LSVANSIMAMYSK 357 (702)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 357 (702)
....+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999874 33456788888999999999999999999987543222 3567888999999
Q ss_pred cCCHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 005329 358 CGQLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 358 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------------- 179 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI-------------------- 179 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH--------------------
Confidence 9999999999999965 46678999999999999999999999999876543322110
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC
Q 005329 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD 511 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (702)
...+..+...+.+.|++++|...|+++.+ .+...+..++..+.+.|++++|.++|+++.+.+....
T Consensus 180 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 180 -----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 01123355566667777777777776542 2455777788889999999999999999886532222
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 005329 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRAC 590 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~ 590 (702)
..++..++.++...|++++|.+.++.+.+. .|+...+..++..+.+.|++++|..+++++.. .|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 356788889999999999999999998754 67777778899999999999999999998777 68888888888776
Q ss_pred Hh---cCCHHHHHHHHHHHHHh
Q 005329 591 MV---QGDVNCGRHTAEKILEL 609 (702)
Q Consensus 591 ~~---~g~~~~A~~~~~~~~~~ 609 (702)
.. .|+.+++...++++++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hhccCCccchhHHHHHHHHHHH
Confidence 64 55888888888888763
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.5e-15 Score=164.61 Aligned_cols=435 Identities=9% Similarity=0.022 Sum_probs=253.2
Q ss_pred hhhcCCChhHHHHHhccCCC--CCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHhccCCh
Q 005329 152 MYTKLGKIELGCRVFDEMPL--RNV-VSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTF---AIVLKASADSGAL 225 (702)
Q Consensus 152 ~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~ 225 (702)
...+.|+++.|...|++..+ |+. .....++..+...|+.++|+..+++.. .|+...+ ..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 35677888888888888764 332 123377888888888888888888876 3332222 2224466677888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 005329 226 NFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQ--MGEEENAFDAFVRMQE 303 (702)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~ 303 (702)
++|.++++++.+.. +.+...+..++..+...++.++|++.++++.+.+......+..++.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888875 44456666777788888888888888888775443332224334443 4555558888888877
Q ss_pred CCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHH
Q 005329 304 SDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTII 383 (702)
Q Consensus 304 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 383 (702)
.. +-+...+..++.++.+.|-...|.++...-. +..+-..... =+.+.|.+..+....++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQ-----LERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHH-----HHHHHHHHHHhhcccccc-------
Confidence 63 3344555666666777776666665544321 1111000000 001111111111100000
Q ss_pred HHHHcCCC---hHHHHHHHHHHHHC-CCCCCH-HHHH----HHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005329 384 GGYSQGGY---EEEAFEYLALMRRE-GPRPNE-FAFA----SVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 384 ~~~~~~g~---~~~a~~~~~~m~~~-g~~p~~-~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
....+ .+.|+.-++.+... +..|.. .-|. =-+-++...|+...+.+.++.+...+.+....+-.++.+
T Consensus 259 ---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 259 ---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 01112 23444555554431 122321 1111 123455666777777777777777776655666677777
Q ss_pred HHHhcCCHHHHHHHHhhCCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCC-----------CCCH--
Q 005329 455 MYSKCGSIKEASQIFYETESD---------DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-----------RPDS-- 512 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~-- 512 (702)
+|...+++++|..+|+.+..+ +......|.-+|...+++++|..+++++.+.-. .||+
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 777777777777777765321 222345566677777777777777777765211 1221
Q ss_pred H-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 005329 513 V-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLR 588 (702)
Q Consensus 513 ~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~ 588 (702)
. .+..++..+...|+..+|++.++++... .| |......+.+.+...|.+.+|++.++.+.. .| +..+....+.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 1 2333455556667777777777776533 34 466666677777777777777777765544 33 3445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCchh
Q 005329 589 ACMVQGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
++...|++.+|..+.+.+++..|+++.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 6667777777777777777777766643
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=2.2e-14 Score=147.53 Aligned_cols=585 Identities=12% Similarity=0.067 Sum_probs=372.2
Q ss_pred HHHHHHccCChHHHHHHhhcCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCC
Q 005329 47 QLKHLVKSGYLHDARKMFDTMTQR---DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVN 123 (702)
Q Consensus 47 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 123 (702)
..+.+.-.|++++|..++.++.+. +...|..|...|-+.|+.++++..+-..-.. .+-|...|..+.......|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhccc
Confidence 344444559999999999998764 6678999999999999999998766655433 25566789999999999999
Q ss_pred chhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCc----chHH----HHHHHHHhCCChHHHHH
Q 005329 124 VNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNV----VSWT----AIITGLVRAGHNKEGLI 195 (702)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~----~li~~~~~~~~~~~a~~ 195 (702)
+++|.-++.++++.. +++...+-.-+..|-+.|+...|...|.++..-++ .-.. ..+..+...++-+.|++
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999987 44555555567889999999999998888763222 2222 33556667777799999
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------CCCchhHH
Q 005329 196 YFAEMWRS-KEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRG---------------------------FDVVSFVA 247 (702)
Q Consensus 196 ~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 247 (702)
.++..... +-..+..+++++...+.+...++.+......+.... +.++..+.
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 98888662 223455677888888888888888888877776621 22222231
Q ss_pred HHHHHHhhhC--CChHHHHHHHhccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 005329 248 NSLATMYSKC--GKLDYSLRLFERMS----TRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASA 321 (702)
Q Consensus 248 ~~li~~~~~~--g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 321 (702)
.++-++.+. +...+++.-|.... ..++..|.-+..+|...|++.+|+.+|..+......-+...|-.+...+-
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122222233 33333333332221 22556788889999999999999999999988755556778888999999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------------hhHHHHHHHHHcC
Q 005329 322 NLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDI------------ISWSTIIGGYSQG 389 (702)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~li~~~~~~ 389 (702)
..|..+.|.+.|+.++... +.+...-..|...+.+.|+.++|.+.+..+..+|. .........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 44566667788889999999999999999866652 1223345567778
Q ss_pred CChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHcccCcHHHHHHH------HHHHHHhC
Q 005329 390 GYEEEAFEYLALMRREG----------------------PRPNEFAFASVLSVCGNMAILEQGKQI------HAHVMSIG 441 (702)
Q Consensus 390 g~~~~a~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~------~~~~~~~~ 441 (702)
|+.++=+++-..|.... ..-...+...++.+-.+.++.....+- +......+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 88777555555443211 111112222233333333332221111 11112233
Q ss_pred CCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CH----HHHHHHHHHHHHcCChHHHHHHHHHchhC-CC-
Q 005329 442 LERTA--MIKSALINMYSKCGSIKEASQIFYETESD-----DI----VSWTAMINGYAEHGYSQEAIHLFEKVPMV-GL- 508 (702)
Q Consensus 442 ~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~- 508 (702)
+..+. ..+.-++..+++.+++++|+.+...+... +. ..-...+.+.+..+++..|.+.++.|+.. +.
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 33322 35566778888888888888887776532 11 12344556667788888888888887753 11
Q ss_pred -CCCH-HHHHHHHHHHhcc-----------------------------------CcHHHHHHHHHHhHHhhCCCCChhhH
Q 005329 509 -RPDS-VTFMGVLTACSHA-----------------------------------GLVDLGFHYFNLMSDKYGFVPSKEHY 551 (702)
Q Consensus 509 -~p~~-~~~~~ll~~~~~~-----------------------------------g~~~~A~~~~~~~~~~~~~~p~~~~~ 551 (702)
.|.. ..|+..++...+. +.+..|++.+-.+.. ..|+....
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~ 776 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLI 776 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHH
Confidence 1221 2333223222222 344555555544432 34553333
Q ss_pred HH-HHHHHH----------hcCCHHHHHHHHHhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---
Q 005329 552 GC-MIDLLC----------RAGRLSDAENMIENMPH--QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC--- 613 (702)
Q Consensus 552 ~~-l~~~~~----------~~g~~~~A~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--- 613 (702)
+. |+-++. |.-..-.+..++.+..+ .+ ...++-.++.+|...|-...|+..|+++++..|.+
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~ 856 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTD 856 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccc
Confidence 22 221111 11122234444444333 22 44566667777777777777777777777775432
Q ss_pred ---------chhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 614 ---------AGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 614 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
..+-.+|.-+|..+|+...|.+++++
T Consensus 857 ~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 857 PKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 12445667777777777777777654
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.2e-15 Score=140.34 Aligned_cols=445 Identities=13% Similarity=0.113 Sum_probs=263.5
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhc--cCCchhh-hHHHHHHHHhcCCCchhHHHH
Q 005329 72 EISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACAL--NVNVNYG-ESLHGYTVKTGFVNSVFVGSA 148 (702)
Q Consensus 72 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 148 (702)
+.+=|.|++ ++.+|..+++.-+|+.|++. |++.+...-..|++..+- ..++--+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 445666765 45677899999999999988 677666665555544333 2333222 12233333333 2233333
Q ss_pred HHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHH
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFG 228 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 228 (702)
+.|++.+ ++-+....+..+|..||.++++--..++|.++|++......+.+..+||.+|.+..-.. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 4455444 55555566788999999999999999999999999998889999999999998765332 3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHH----hccC----CCCcchHHHHHHHHHhcCChhH-HHHHHH
Q 005329 229 REIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLF----ERMS----TRDVISWTTIITSYVQMGEEEN-AFDAFV 299 (702)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~ 299 (702)
++++.+|.+..+.||..|+|+++++..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 889999999999999999999999999999988776543 3332 4566666666666666655533 333333
Q ss_pred HHH----HCCCCC----ChhhHHHHHHHHHccCchHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005329 300 RMQ----ESDVKP----NEYTFAAIISASANLARIQWGEQLHAHVLRLG----LVDSLSVANSIMAMYSKCGQLTSTSIV 367 (702)
Q Consensus 300 ~m~----~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 367 (702)
+.. .+.++| |...|...|..|.+..+.+.|.++...+.... +.|+.
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~---------------------- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ---------------------- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------
Confidence 322 222222 23334555555666666666655554433211 01110
Q ss_pred HhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChh
Q 005329 368 FHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAM 447 (702)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (702)
....-|..+....++....+.-+..|+.|.-.-.-|+..+...++++..-.+.++-..++|..++..|......
T Consensus 396 ------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 396 ------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 01123445566666667777777777777766677777777778887777788888778887777766544333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHc-CChHH-HHHHHHHchhCCCCCCHHHHHHHHHHHhcc
Q 005329 448 IKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEH-GYSQE-AIHLFEKVPMVGLRPDSVTFMGVLTACSHA 525 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 525 (702)
....+...+++.. ..|+......+-....+. -++-+ ....-.+|.+..++|.. .+.+.-.+.+.
T Consensus 470 l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~--l~~ia~Ll~R~ 535 (625)
T KOG4422|consen 470 LREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATS--LNCIAILLLRA 535 (625)
T ss_pred HHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhH--HHHHHHHHHHc
Confidence 3332322222221 012111111111111110 01111 11122334444444433 33344446677
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHhCCC
Q 005329 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGC---MIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
|..++|.+++..+.++.+-.|-....++ +++.-.+.++.-.|..+++-|..
T Consensus 536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7777777777777555444444444443 34445566677777777777644
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.6e-14 Score=155.15 Aligned_cols=443 Identities=10% Similarity=0.022 Sum_probs=296.6
Q ss_pred HHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHH---HHHHHhCCChH
Q 005329 115 LKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAI---ITGLVRAGHNK 191 (702)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~ 191 (702)
+-...+.|++..|...|++.++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33456899999999999999887643323444 788888899999999999999887655544443 34777889999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC
Q 005329 192 EGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS 271 (702)
Q Consensus 192 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 271 (702)
+|+++|+++.+.. +-++..+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999998864 334566667778889999999999999999887 5555555555555545666666999999886
Q ss_pred C--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHH
Q 005329 272 T--R-DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVA 348 (702)
Q Consensus 272 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (702)
+ | +...+..++.++.+.|-...|.++..+-... +.+ .....+-. +. ..+.++.+..++..--
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~~l~~--------~~----~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYRQLER--------DA----AAEQVRMAVLPTRSET 261 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHHHHHH--------HH----HHHHHhhcccccccch
Confidence 3 4 5667788889999999999999877663211 111 11111100 00 0011111110100000
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC----C-CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005329 349 NSIMAMYSKCGQLTSTSIVFHGMI----R-RD-----IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVL 418 (702)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~----~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 418 (702)
. +-.-.+.|+.-++.+. . |. ..+..-.+.++...|++.++++.|+.+...|.+....+-..+.
T Consensus 262 ~-------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 262 E-------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred h-------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0 0000112222222211 1 10 1122234556667777777777777777776655556667777
Q ss_pred HHHcccCcHHHHHHHHHHHHHhCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------CH-
Q 005329 419 SVCGNMAILEQGKQIHAHVMSIGL-----ERTAMIKSALINMYSKCGSIKEASQIFYETES--D-------------DI- 477 (702)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-------------~~- 477 (702)
++|...+.+++|..++..+..... +++......|..+|...+++++|..+++.+.+ | |.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 777777777777777777765431 22333345677777788888888887777653 1 11
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHH
Q 005329 478 --VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCM 554 (702)
Q Consensus 478 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 554 (702)
..+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|.+.++.+. .+.|+ ..+....
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~ 490 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHH
Confidence 234556777889999999999999998653 5577888888889999999999999997765 45776 6677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 005329 555 IDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLL 587 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~ 587 (702)
+..+...|++++|..+.+.... .|+......|-
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 8888999999999999888766 55544433333
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=7.6e-15 Score=138.70 Aligned_cols=464 Identities=13% Similarity=0.081 Sum_probs=291.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHhccCCC----CCcch-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHH---
Q 005329 145 VGSALLDMYTKLGKIELGCRVFDEMPL----RNVVS-WTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVL--- 216 (702)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 216 (702)
+...|..-|.......+|+..++-+.+ ||... --.+-..+.+...+..|+++|+.....-...+..+-..++
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 333444445555566677766665542 22211 1122345566667777777777665542222222222222
Q ss_pred -HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC----------------CCcchHH
Q 005329 217 -KASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST----------------RDVISWT 279 (702)
Q Consensus 217 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~ 279 (702)
-.+.+.|.++.|...|+...+. .|+..+--.|+-.+..-|+.++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 2355677777777777777665 45555544455555556777777777766631 1111122
Q ss_pred HHH-----HHHHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHH
Q 005329 280 TII-----TSYVQMG--EEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIM 352 (702)
Q Consensus 280 ~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 352 (702)
.-| +-+-+.+ +.++++-.-.++..--+.||-.. ..+.+.+.++.-....+..+.. -.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHH
Confidence 111 1111111 11111111111111111121110 1122222222111111111111 1123
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhhHHH----HH-HHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCc
Q 005329 353 AMYSKCGQLTSTSIVFHGMIRRDIISWST----II-GGYSQ-GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAI 426 (702)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----li-~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 426 (702)
..|.+.|+++.|+++++-....|..+-++ |- --|.+ ..++..|..+-+...... +-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35778999999999988886665443222 21 12222 346677777666554321 2222222222233445689
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHc
Q 005329 427 LEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKV 503 (702)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (702)
+++|.+.+.+.....-......|| +.-.+-+.|++++|+..|-++. ..++.....+.+.|-...++..|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999998877666666666 4445778899999999998765 467778888899999999999999999887
Q ss_pred hhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH
Q 005329 504 PMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDV 581 (702)
Q Consensus 504 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~ 581 (702)
... ++.|+....-|...|-+.|+-..|.+.+-.-- ..-| +.++...|...|....-+++|+.+|+++.- +|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 754 45577889999999999999999999876543 3444 689999999999999999999999999866 89999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCCh
Q 005329 582 VWSTLLRACM-VQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRW 630 (702)
Q Consensus 582 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 630 (702)
-|..++..|. +.|++..|.++|+.+....|.+..++..|+.++...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999888875 789999999999999999999999999999999888743
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=5.1e-13 Score=137.72 Aligned_cols=561 Identities=13% Similarity=0.057 Sum_probs=373.6
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhH
Q 005329 82 YVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIEL 161 (702)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 161 (702)
+..+|+.++|.+++.++++.. +-+...|.+|...+-..|+.+.+...+-.+.... +.|...|..+-....+.|+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 444599999999999998764 6667789999999999999999888776665554 5567899999999999999999
Q ss_pred HHHHhccCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHH----HHHHhccCChHHHHHHHHH
Q 005329 162 GCRVFDEMPLR---NVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIV----LKASADSGALNFGREIHTI 234 (702)
Q Consensus 162 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~ 234 (702)
|.-.|.+..+. +...+--=+..|-+.|+...|.+.|.++.....+.|..-+..+ ++.+...++-+.|.+.++.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999987643 3333334456788899999999999999886443333333333 4456667777999999888
Q ss_pred HHHhC-CCCchhHHHHHHHHhhhCCChHHHHHHHhccCC----C----------------------CcchHH----HHHH
Q 005329 235 MLKRG-FDVVSFVANSLATMYSKCGKLDYSLRLFERMST----R----------------------DVISWT----TIIT 283 (702)
Q Consensus 235 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~ 283 (702)
..+.+ -..+...++.++..|.+...++.|......+.. + +..+|+ -++-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 88733 245566788899999999999988877755532 1 111222 1233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 005329 284 SYVQMGEEENAFDAFVRMQESDVK--PNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQL 361 (702)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (702)
++......+....+.....+..+. -+...|.-+..++.+.|.+..|..++..+.......+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 444455555555555556665533 345678889999999999999999999999877667788999999999999999
Q ss_pred HHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHcccCcHHHH
Q 005329 362 TSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRR--------EGPRPNEFAFASVLSVCGNMAILEQG 430 (702)
Q Consensus 362 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a 430 (702)
+.|...|+.+... +..+-..|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998543 444566777889999999999999998642 23445555555556667777887776
Q ss_pred HHHHHHHHHhCC----------------------CCChhHHHHHHHHHHhcCCHHHHHHHHhhC--------CC---CCH
Q 005329 431 KQIHAHVMSIGL----------------------ERTAMIKSALINMYSKCGSIKEASQIFYET--------ES---DDI 477 (702)
Q Consensus 431 ~~~~~~~~~~~~----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~---~~~ 477 (702)
..+...++.... .........++.+-.+.++......-...- .. .+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 555444433110 111112222333333333322222111111 00 111
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHchhCCC--CCCHH--H-HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---h
Q 005329 478 -VSWTAMINGYAEHGYSQEAIHLFEKVPMVGL--RPDSV--T-FMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---K 548 (702)
Q Consensus 478 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~ 548 (702)
..+.-++.++++.+++++|+.+...+..... .++.. . -...+.++...+++..|...++.|...++...+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2345677889999999999999988875432 22221 2 234556667899999999999988766443322 3
Q ss_pred hhHHHHHHHHH-----------------------------------hcCCHHHHHHHHHhCCC-CCCHHHHHHH-HHHHH
Q 005329 549 EHYGCMIDLLC-----------------------------------RAGRLSDAENMIENMPH-QKDDVVWSTL-LRACM 591 (702)
Q Consensus 549 ~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~~~-~p~~~~~~~l-~~~~~ 591 (702)
..|+...+.+. .++.+..|+..+-.+.. .|+.+..+.. +.++.
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 33442222222 33455555554433332 3443332222 22221
Q ss_pred ----------hcCCHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 592 ----------VQGDVNCGRHTAEKILELHPS--CAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 592 ----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
++-..-.+...+++-.++... .-++.+++|.+|...|-..-|..+++++.+-.+
T Consensus 786 h~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 786 HLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 222344556666666665533 567888999999999999999999999987543
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.6e-14 Score=132.74 Aligned_cols=421 Identities=10% Similarity=0.041 Sum_probs=224.7
Q ss_pred ccccccccCcccCchhhhhHHHHHHc---cCChHHHHHHhhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhC
Q 005329 28 LLFQGTQLPVYVSTPEVNSQLKHLVK---SGYLHDARKMFDTMTQ---RDEISWTTLISGYVKAMDSIEALALFSRVWVE 101 (702)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 101 (702)
++..+++-...++..+--.|++.-+- +.-.-.-++.|-.|.. .+..+| +.|+..+ ++.+..
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd---L~~E~~-- 203 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD---LLFETL-- 203 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH---HHHhhc--
Confidence 44566666777776666665554332 2223334455555543 122233 1222222 222111
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHH
Q 005329 102 PQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAII 181 (702)
Q Consensus 102 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 181 (702)
+-...++..++.+.++-...+.|.+++.+......+.+..++|.+|.+-.-.-+-+..-++...-..||..|+|+++
T Consensus 204 ---PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 204 ---PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred ---CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 22234444444444444444444444444444444444445554444322221111111111111245555555555
Q ss_pred HHHHhCCChH----HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChH-HHHHHHHHHHHh--C--C----CCchhHHH
Q 005329 182 TGLVRAGHNK----EGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALN-FGREIHTIMLKR--G--F----DVVSFVAN 248 (702)
Q Consensus 182 ~~~~~~~~~~----~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~--~--~----~~~~~~~~ 248 (702)
++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++.. .+..++.++... | + +.|..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 5555555443 34567777888888888888888888877766653 345555555442 1 2 22344556
Q ss_pred HHHHHhhhCCChHHHHHHHhccCCC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 005329 249 SLATMYSKCGKLDYSLRLFERMSTR-----------DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAII 317 (702)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 317 (702)
.-+..|.+..+.+.|.++-.-+... ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 6677777777777777766544321 12335667778888889999999999998888889999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHc--CCChHHH
Q 005329 318 SASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQ--GGYEEEA 395 (702)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a 395 (702)
++....|.++-.-+++..++..|..........++..+++.. +.|+...-..+-...++ ..-.+..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998886555555444444444432 01111111111111111 0001111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC-CC---ChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005329 396 FEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGL-ER---TAMIKSALINMYSKCGSIKEASQIFYE 471 (702)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (702)
...-.+|.+... .....+.+...+.+.|..++|.+++..+.+.+- .| .......+++.-.+......|..+++-
T Consensus 509 e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 112223333222 333344444455666777777776666644322 22 222223455555566667777777766
Q ss_pred CCCCCHH
Q 005329 472 TESDDIV 478 (702)
Q Consensus 472 ~~~~~~~ 478 (702)
+...+..
T Consensus 587 a~~~n~~ 593 (625)
T KOG4422|consen 587 ASAFNLP 593 (625)
T ss_pred HHHcCch
Confidence 6544433
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.7e-11 Score=120.36 Aligned_cols=462 Identities=11% Similarity=0.058 Sum_probs=326.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHhh
Q 005329 180 IITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIML----KRGFDVVSFVANSLATMYS 255 (702)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~ 255 (702)
|.-+|++..-++.|..++....+. ++.+...|.+....=-.+|+.+...++++.-+ ..|+..+..-|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334555566667777777777654 66666677666665566777777766665443 3466666666655556666
Q ss_pred hCCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHH
Q 005329 256 KCGKLDYSLRLFERMST------RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWG 329 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 329 (702)
+.|..--+..+...... .--.+|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 66665555555544421 12346777777777778888888888777664 233444555555555566777888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005329 330 EQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREG 406 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 406 (702)
..++..+...- +.....|-.....+-..|+...|..++.+..+ .+...|-.-+.......+++.|..+|.+...
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 88888777653 44455566666667777888888888877633 2555777777777888888888888888766
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHH
Q 005329 407 PRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES--D-DIVSWTAM 483 (702)
Q Consensus 407 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 483 (702)
..|+...|..-+...--.++.++|.+++++..+. ++.-...|-.+.+.+-+.++++.|...|..-.+ | .+..|-.|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 4555555555555555567888888888777664 233455677778888888888888888876553 3 45677777
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGR 563 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 563 (702)
...--+.|....|..++++..-.+ +-|...|...|+.=.+.|..+.|..+..++.+. ++.+...|..-|.+..+.++
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc
Confidence 777777888888888888877553 446677888888888888888888888887765 34456677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 564 LSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 564 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
-..+.+.+++... |+.....+...+....+++.|.+-|++++..+|++..+|..+-..+.+.|.-++-.+++++....
T Consensus 803 kTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 803 KTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 6666666666543 55667778888999999999999999999999999999999999999999999999999988764
Q ss_pred CCccCCeeeEE
Q 005329 644 GVIKEPGWSRI 654 (702)
Q Consensus 644 ~~~~~~~~~~~ 654 (702)
.|..|..|.
T Consensus 881 --EP~hG~~W~ 889 (913)
T KOG0495|consen 881 --EPTHGELWQ 889 (913)
T ss_pred --CCCCCcHHH
Confidence 455666665
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=4.6e-12 Score=125.71 Aligned_cols=545 Identities=12% Similarity=0.069 Sum_probs=299.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHH
Q 005329 86 MDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRV 165 (702)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 165 (702)
++..+|..+++.+++.+...|..++-. .+.--..|.+..|+.+...=-+. ++.+..+|-.-+ +....+.|..+
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAs--ArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIAS--ARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 367789999999988764445444433 33333445555555432211110 223333332222 33344444444
Q ss_pred hccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 005329 166 FDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSF 245 (702)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 245 (702)
.-...+..+.+-..-+.+---..+...=..++++..+. ++-+...| ++.....+.+.|+-++....+-- +.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LW----KaAVelE~~~darilL~rAvecc-p~s~d 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLW----KAAVELEEPEDARILLERAVECC-PQSMD 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHH----HHHHhccChHHHHHHHHHHHHhc-cchHH
Confidence 43332211111111122221222223333444444442 22222223 22233344445666666555542 22222
Q ss_pred HHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCChhhHHHHHH
Q 005329 246 VANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVR----MQESDVKPNEYTFAAIIS 318 (702)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~ 318 (702)
|.-+|.+...++.|..+++...+ .+...|.+-...=-.+|+.+....++.+ +...|+..+..-|..=..
T Consensus 412 ----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 ----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 22334444555556666555432 2455555554444556666665555543 344566666666655555
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChH
Q 005329 319 ASANLARIQWGEQLHAHVLRLGLVD--SLSVANSIMAMYSKCGQLTSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEE 393 (702)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 393 (702)
.|-..|..-.+..+....+..|+.. -..+|..-...+.+.+.++-|+.+|....+- +...|...+..--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 6666666666666666666666543 2345566666666666666666666655332 3445555555555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005329 394 EAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE 473 (702)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 473 (702)
....+|++....- +-....+.......-..|++..|+.++..+.+.... +..++-+-+........++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 6666666666542 222233333334444556666666666666665543 55566666666666666777777666655
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hh
Q 005329 474 --SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KE 549 (702)
Q Consensus 474 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~ 549 (702)
.+....|.--+...--.+..++|++++++..+. -|+. ..|..+.+.+.+.++++.|.+.|..-.+ .-|+ +.
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ip 720 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIP 720 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCch
Confidence 244455555555555556666777766666653 3443 3555566666666666666666665442 2343 55
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS--------------- 612 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------------- 612 (702)
.|-.|.+.=.+.|..-.|..++++... +.+...|...+..-.+.|+.+.|..+..++++..|.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 566666666666666677777666544 345566666666666777777776666666655444
Q ss_pred ---------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEE
Q 005329 613 ---------------CAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRI 654 (702)
Q Consensus 613 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 654 (702)
|+......+..+....++++|.+.|++.++.+...-..|.|+
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 455677788889999999999999999998776655555554
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=6.1e-13 Score=136.29 Aligned_cols=525 Identities=10% Similarity=-0.018 Sum_probs=300.2
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCC
Q 005329 93 ALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLR 172 (702)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 172 (702)
.++-.+... |+.|+.+||..++.-|+..|+.+.|- +|..|.-...+.....++.++.+..+.++.+.+. .|
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 345555555 88888888888888888888888888 8888888887888888888888888888866655 67
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhcc-CChHH------HHHHHHHHHH
Q 005329 173 NVVSWTAIITGLVRAGHNKEGLIYFAE-MW-------RSKEQGDSYTFAIVLKASADS-GALNF------GREIHTIMLK 237 (702)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~~~~p~~~~~~~ll~~~~~~-~~~~~------a~~~~~~~~~ 237 (702)
...+|..|..+|.+.||... ++..++ |. ..|+..-...|-..++++... .+... -+.+++...+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77888889998888888655 222222 21 122222222222222221110 00000 1112222222
Q ss_pred hCC-CCchhHHH---HHHHHhh-hCCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005329 238 RGF-DVVSFVAN---SLATMYS-KCGKLDYSLRLFERMST-RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEY 311 (702)
Q Consensus 238 ~~~-~~~~~~~~---~li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (702)
.+. .|...-++ ..++-.. ....+++-..+.....+ ++..+|.+++.+-..+|+.+.|..++.+|+++|++.+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 221 11111111 1122221 22334444444444444 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCC
Q 005329 312 TFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGY 391 (702)
Q Consensus 312 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 391 (702)
-|..++.+ .++...++.+.+-|...|+.|+..|+.-.+-.+..+|....+....+.-.--....+..+..+.....+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 99888877 888899999999999999999999998877777775553222111111000011223333322111111
Q ss_pred hH-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHH
Q 005329 392 EE-----EAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLER---TAMIKSALINMYSKCGSIK 463 (702)
Q Consensus 392 ~~-----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 463 (702)
.+ -....+.+..-.|.......|... .-....|.-+.+.++...+....... +...|..+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~----------- 385 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL----------- 385 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH-----------
Confidence 11 112222222223333333333222 22223555566666555554322111 12222222
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHc------------hh----CCCCC-------CHHHHHH
Q 005329 464 EASQIFYETESDDIVSWTAMINGYAE---HGYSQEAIHLFEKV------------PM----VGLRP-------DSVTFMG 517 (702)
Q Consensus 464 ~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~~~~~ 517 (702)
+.+.|.+...+..........+... .....+..++.... .. ....| -...-+.
T Consensus 386 -lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 386 -LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 3334444333222111111111111 11112222222111 10 00111 1122345
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHh
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQ-----KDDVVWSTLLRACMV 592 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~ 592 (702)
++..|+..-+..++...-+..... +- ...|..|++.+......+.|..+.++...+ -+..-+..+.+...+
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~--lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL--LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 555666666666666544444221 11 267899999999999999999999888762 344566778888889
Q ss_pred cCCHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005329 593 QGDVNCGRHTAEKILELH---PSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
.+....+..+++++.+.- |....+...+.+.....|..+.-.++.+-+...|+..
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999999988887642 4445666777777888899988888888888888765
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.5e-13 Score=129.20 Aligned_cols=405 Identities=15% Similarity=0.079 Sum_probs=231.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhh
Q 005329 179 AIITGLVRAGHNKEGLIYFAEMWRSKEQGD-SYTFAIVLKASADSGALNFGREIHTIMLKRGFDVV-SFVANSLATMYSK 256 (702)
Q Consensus 179 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 256 (702)
..-.-|.++|.+++|++.|.+.++ ..|| +..|...-.+|...|+++++.+--...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 344567788889999999998887 4677 667777777788888888888777666665 343 3344455566667
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHH---------HHHCC--CCCChhhHHHHHHHHHccCc
Q 005329 257 CGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVR---------MQESD--VKPNEYTFAAIISASANLAR 325 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~g--~~p~~~t~~~ll~~~~~~~~ 325 (702)
.|++++|+.= .+-.++..++....-.-.+.+++.+ |.+.+ +-|+.....+....+...-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 7777766532 2223333333333322233333332 11111 33444443333333221000
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCHHHHHHHHhcC-------CCCC---------hhhHHHHHHHHHc
Q 005329 326 IQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKC-GQLTSTSIVFHGM-------IRRD---------IISWSTIIGGYSQ 388 (702)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~-------~~~~---------~~~~~~li~~~~~ 388 (702)
. .+...+-..|...-..+-..+... ..+..|...+.+- ...+ ..+......-+.-
T Consensus 267 ~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 P--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred c--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0 000000001111111111111110 1222222222211 0111 1112222222334
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005329 389 GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQI 468 (702)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 468 (702)
.|+.-.|..-|+..+.....++.. |..+...|....+.++....|....+.+.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-------------------------- 391 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-------------------------- 391 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC--------------------------
Confidence 566666666666666544333321 33333444444444444444444444332
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 005329 469 FYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS 547 (702)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 547 (702)
.|+.+|.--...+.-.+++++|..=|++.++ +.| +...|..+..+..+.+.++++...|++..++ ++--
T Consensus 392 ------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~ 461 (606)
T KOG0547|consen 392 ------ENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNC 461 (606)
T ss_pred ------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Confidence 2344444444555556677888888888776 345 3456766766677888888889999888765 3333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD---------DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
++.|+.....+..++++++|.+.|+.+.. .|. +.+-..++..- -.+++..|+.+++++++++|..-..|
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHH
Confidence 88888888888889999999998888766 332 22222333332 33899999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 618 ITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..|+....++|+.++|+++|++...
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.7e-12 Score=123.10 Aligned_cols=434 Identities=12% Similarity=0.133 Sum_probs=286.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHhh
Q 005329 181 ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAI-VLKASADSGALNFGREIHTIMLKRGFDVV----SFVANSLATMYS 255 (702)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 255 (702)
..-|.-+....+|+..|+-+.+...-|+...... +-..+.+.+++.+|.++++..+..-...+ ..+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3456666778899999999988888888776543 33446677888999999988887632222 224445556678
Q ss_pred hCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH--------HHHHHHHHccCc
Q 005329 256 KCGKLDYSLRLFERMST--RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTF--------AAIISASANLAR 325 (702)
Q Consensus 256 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~~~ 325 (702)
+.|+++.|..-|+...+ |+..+--.|+-++..-|+.++..+.|.+|..-...||..-| ..|+.-..+...
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 88999999998887653 56554444455556678889999999998875444444433 112211111111
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH----HHHHhcCCCCChh-------------hH--------H
Q 005329 326 IQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTST----SIVFHGMIRRDII-------------SW--------S 380 (702)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~-------------~~--------~ 380 (702)
++.|.+.+ + .+.+++ .++..-++.++-. .+ .
T Consensus 368 -------lk~~ek~~-k----------------a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei 423 (840)
T KOG2003|consen 368 -------LKNMEKEN-K----------------ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEI 423 (840)
T ss_pred -------HHHHHHhh-h----------------hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhh
Confidence 11111111 0 011111 1122222222110 00 1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005329 381 TIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASV--LSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK 458 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 458 (702)
.-...|.+.|+++.|+++++-+.+..-+.-...-+.+ +.-+-...++..|.+.-+...... ..+......-.+....
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1234578899999999999988776544333332222 222222335666666655554322 1122222222233445
Q ss_pred cCCHHHHHHHHhhCCCCCHHHHHHHH---HHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005329 459 CGSIKEASQIFYETESDDIVSWTAMI---NGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
.|++++|.+.|++....|..+-.+|. -.+-..|+.++|++.|-++... +.-+......+...|....+...|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 79999999999999988776555444 3467889999999999887642 2345567777888888899999999999
Q ss_pred HHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 536 NLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 536 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
.+.. .+.| |+.....|.+.|-+.|+-..|.+..-+--. +-+..+..-|...|....-.+.++..|+++--+.|+
T Consensus 582 ~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 8875 4555 488999999999999999999988655444 456777777888888888899999999999999996
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 613 CAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
...-...++.++.+.|++.+|.++++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6666666788889999999999999987664
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=3.5e-12 Score=130.89 Aligned_cols=452 Identities=11% Similarity=0.002 Sum_probs=234.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 172 RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
++..+|..++.+-.-+|+.+.|..++.+|++.|++.+.+-|-.++-+ .++..-++.++..|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67777888888878888888888888888888888777766666544 677777778888888888888888887777
Q ss_pred HHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcC-----Chh-----HHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 005329 252 TMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMG-----EEE-----NAFDAFVRMQESDVKPNEYTFAAIISASA 321 (702)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~-----~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 321 (702)
..+.++|....+.+.. +....+++-+.+-.-.| +.+ -....+.+..-.|+......|.... -..
T Consensus 279 ip~l~N~~t~~~~e~s-----q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~ 352 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGS-----QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLR 352 (1088)
T ss_pred Hhhhcchhhhhccccc-----chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHH
Confidence 6666655533222221 12222222222222222 111 1122222222234333333332222 223
Q ss_pred ccCchHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCHHHHHHHHh--cCCCC--ChhhHHHHHHHHHcCCChHH
Q 005329 322 NLARIQWGEQLHAHVLRLGL---VDSLSVANSIMAMYSKCGQLTSTSIVFH--GMIRR--DIISWSTIIGGYSQGGYEEE 394 (702)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~--~~~~~~~li~~~~~~g~~~~ 394 (702)
..|.-+.++++...+..-.. ..++..+..++.-|.+.-+-.-...++. +..+. ++...- .+.-+...-+...
T Consensus 353 hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp-~vsell~~lrkns 431 (1088)
T KOG4318|consen 353 HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTP-RVSELLENLRKNS 431 (1088)
T ss_pred HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhH-HHHHHHHHhCcch
Confidence 35666666666665543221 1223334444444443222111111111 00000 000000 0000000001111
Q ss_pred HHHHHHHHHH----CCCC-------CCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 005329 395 AFEYLALMRR----EGPR-------PNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIK 463 (702)
Q Consensus 395 a~~~~~~m~~----~g~~-------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 463 (702)
+++-+..+.. .... +-...-+.++..|+..-+..+++..-+.....-+. ..|..||+.+....+.+
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle 508 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLE 508 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHH
Confidence 1111111100 0000 11122344555565555555555443333332222 56788999999999999
Q ss_pred HHHHHHhhCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 005329 464 EASQIFYETESDDI------VSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPD-SVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 464 ~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
.|....++...++. .-+..+.+.+.+.+...++..+++++.+.-. .|+ ..++-.++......|+.+...+++
T Consensus 509 ~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 509 YALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 99999988876543 4577788888889999999999988876322 232 245556667777778888777777
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH---------------------HHh
Q 005329 536 NLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRA---------------------CMV 592 (702)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~---------------------~~~ 592 (702)
+-+... |+.-+ ..++....+.++...|.+..+.... +|.+.....+... |.+
T Consensus 589 d~lvsl-gl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k 663 (1088)
T KOG4318|consen 589 DILVSL-GLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEK 663 (1088)
T ss_pred HHHHHh-hhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHh
Confidence 766543 44432 3344445556666666555444332 3333322222222 233
Q ss_pred cCCHHHHHHHHHHH--HHhCCC--------------------CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 593 QGDVNCGRHTAEKI--LELHPS--------------------CAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 593 ~g~~~~A~~~~~~~--~~~~p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.|++..|..+.+-- .-..|. .......|...|.+.|+++.|..+|.++.
T Consensus 664 ~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 664 LGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred cccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 33333332222100 000010 12234458889999999999999999886
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.4e-15 Score=148.48 Aligned_cols=255 Identities=17% Similarity=0.179 Sum_probs=114.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005329 383 IGGYSQGGYEEEAFEYLALMRREGPRPNEFAFAS-VLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGS 461 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 461 (702)
...+.+.|++++|++++++.......|+...|.. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445556666666666644433322333333333 233444456666666666666655433 44455556666 67788
Q ss_pred HHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005329 462 IKEASQIFYETE--SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVG-LRPDSVTFMGVLTACSHAGLVDLGFHYFNLM 538 (702)
Q Consensus 462 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 538 (702)
+++|.+++...- .+++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888777653 3456677788888999999999999999877532 3456677888888899999999999999999
Q ss_pred HHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 539 SDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 539 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.+. .|+ ......++..+...|+.+++..+++.... +.++..|..++.++...|+.++|...++++...+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 865 675 77888999999999999998888877655 356678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 616 THITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
....++.++...|+.++|.+++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.5e-13 Score=134.68 Aligned_cols=273 Identities=15% Similarity=0.054 Sum_probs=166.9
Q ss_pred CHHHHHHHHhcCCCC--C-hhhHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 005329 360 QLTSTSIVFHGMIRR--D-IISWSTIIGGYSQGGYEEEAFEYLALMRREG--PRPNEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 360 ~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
+..+|+..|..++.. | ......+..+|...+++++|.++|+.+.+.. .--+...|.+.+.-+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777888775432 2 2345567778888888888888888887632 11245567666654321 1122222
Q ss_pred H-HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC
Q 005329 435 A-HVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD---DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP 510 (702)
Q Consensus 435 ~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 510 (702)
. .+.+ --+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 2222 12345666777777777777777777777766532 345666666666666667777777766553 233
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 005329 511 DS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTL 586 (702)
Q Consensus 511 ~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l 586 (702)
.. ..|..+.-.|.+.++++.|.-.|+++. .+.|. ......++..+.+.|+.|+|+.+++++.. +.++..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 22 344455566667777777777777665 45564 55555666666677777777777776655 3344444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..+...+++++|...++++.++-|++...+..++.+|.+.|+.+.|+.-|--|.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 55566666777777777777777777777777777777777777777666655543
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3e-10 Score=108.89 Aligned_cols=414 Identities=11% Similarity=0.066 Sum_probs=233.2
Q ss_pred cCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 005329 155 KLGKIELGCRVFDEMPL---RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREI 231 (702)
Q Consensus 155 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 231 (702)
..+++..|.++|+.... .+...|---+..=.++.....|..++++.+..=+..|..-| -.+..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 34667778888887763 55666777777888889999999999988764333333222 222233356889999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005329 232 HTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS--TRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPN 309 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 309 (702)
|+.-.+- .|+...|.+.|+.=.+-..++.|..++++.. .|++.+|--..+.=.+.|....+..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9888764 7899999999999888899999999998764 688888888888888889999999888887664 123
Q ss_pred hhhHHHHHHHH----HccCchHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHH--------hcCCCC--
Q 005329 310 EYTFAAIISAS----ANLARIQWGEQLHAHVLRLGLVD-SLSVANSIMAMYSKCGQLTSTSIVF--------HGMIRR-- 374 (702)
Q Consensus 310 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~-- 374 (702)
...-..+..++ .+...++.|.-+|+..++.-... ....|..+...--+-|+-....+.. +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333333333 34567778888888777753221 2445555555555556654443332 222222
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH---HcccCcHHHHHHHHHHHHHhCCC
Q 005329 375 -DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF-------AFASVLSV---CGNMAILEQGKQIHAHVMSIGLE 443 (702)
Q Consensus 375 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 443 (702)
|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|.-+=-+ -....+++.+.++++..++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 3345555666666678888888888877764 444221 11111111 1234555666666655555 222
Q ss_pred CChhHHHHHHHHH----HhcCCHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHH
Q 005329 444 RTAMIKSALINMY----SKCGSIKEASQIFYETE--SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMG 517 (702)
Q Consensus 444 ~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (702)
....+|.-+--+| .++.++..|.+++.... -|-..+|...|..-.+.++++.+..++++.++-+ +.|..+|..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 2333333322222 23444444444444332 2333444444444444444444444444444422 223334443
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
....=...|+.+.|..+|.-+++...+......|-+.|+.=...|.+++|..+++++..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 33333344444444444444443322222233333333333444444444444444443
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=5.2e-10 Score=107.30 Aligned_cols=438 Identities=10% Similarity=0.051 Sum_probs=321.9
Q ss_pred CCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCC--CCc-chHHHHH
Q 005329 105 NMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPL--RNV-VSWTAII 181 (702)
Q Consensus 105 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li 181 (702)
+.+...|....+--...+++..|..+|+.++.-. ..+...|-..+.+=.+...+..|..+|+.... |-+ ..|..-+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555566666666667888999999999998766 55667777778888889999999999997652 222 2455445
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChH
Q 005329 182 TGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLD 261 (702)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 261 (702)
-.=-..|+...|.++|++..+ ..|+...+.+.|+.=.+.+.++.|..+++..+-. .|++..|-.....=-+.|.+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 444567999999999999877 6899999999999999999999999999998865 699999999899889999999
Q ss_pred HHHHHHhccCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCchHHHHHH
Q 005329 262 YSLRLFERMSTR------DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPN---EYTFAAIISASANLARIQWGEQL 332 (702)
Q Consensus 262 ~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~ 332 (702)
.|..+|+...+- +...+.+...-=.++..++.|.-+|+-..+. -|. ...|......--+-|+....+..
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 999999876531 2334555555455667788888888887775 333 34455555544556666555554
Q ss_pred HHH--------HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--C---hhhHHHHHH--------HHHcCCC
Q 005329 333 HAH--------VLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRR--D---IISWSTIIG--------GYSQGGY 391 (702)
Q Consensus 333 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~---~~~~~~li~--------~~~~~g~ 391 (702)
... +++. -+.|-.+|--.++.-...|+.+...++|+..+.. . -..|.-.|- .=....+
T Consensus 303 Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322 2222 2456667777788888889999999999988432 1 112222221 1134688
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc----ccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005329 392 EEEAFEYLALMRREGPRPNEFAFASVLSVCG----NMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQ 467 (702)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 467 (702)
.+.+.++|+...+. ++...+||..+=-.++ +..++..|.+++..++ |..|-..+|...|..-.+.++++.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999998883 4556667776544443 5678889999888765 677888999999999999999999999
Q ss_pred HHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 005329 468 IFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVG-LRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYG 543 (702)
Q Consensus 468 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 543 (702)
+|++..+ .+..+|......-...|+.+.|..+|+-.++.. +......+...|.-=...|.++.|..+|+.+.+.
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 9998774 366788888888888999999999999888642 1122345666666666789999999999999865
Q ss_pred CCCChhhHHHHHH
Q 005329 544 FVPSKEHYGCMID 556 (702)
Q Consensus 544 ~~p~~~~~~~l~~ 556 (702)
.+...+|-.+..
T Consensus 537 -t~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 -TQHVKVWISFAK 548 (677)
T ss_pred -cccchHHHhHHH
Confidence 455556655544
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.9e-13 Score=132.61 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=161.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 005329 391 YEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGL--ERTAMIKSALINMYSKCGSIKEASQI 468 (702)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 468 (702)
+..+|+..|.....+ ..-.......+..+|...+++++++++|+.+.+... -.+..+|.+.+-.+-+.-.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 356777777775443 222224455566777777888888888877776432 12455666555444332222211111
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 005329 469 FYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS 547 (702)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 547 (702)
+-.+-+..+.+|-++..+|.-.++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+ ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 2222234567788888888878888888888877776 355 45677777777777777888888777665 33333
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005329 548 -KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 548 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
-..|..|+-.|.++++++.|+-.|+++.. .| +......++..+.+.|+.++|++++++++.++|.|+-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 23333456677788888888888877776 33 5556666777777778888888888888888888887777788888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 005329 625 AAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 625 ~~~g~~~~A~~~~~~~~~~ 643 (702)
...+++++|...++++++.
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 8888888888888777664
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=6.6e-12 Score=128.36 Aligned_cols=275 Identities=12% Similarity=0.059 Sum_probs=181.0
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcccCcHHHHHH
Q 005329 358 CGQLTSTSIVFHGMIRR--DII-SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFA--SVLSVCGNMAILEQGKQ 432 (702)
Q Consensus 358 ~g~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 432 (702)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666665554332 112 2222233335667777777777777653 33332222 22445566677777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 005329 433 IHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD---DI--------VSWTAMINGYAEHGYSQEAIHLFE 501 (702)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 501 (702)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777766655 334556666777777777777777777766532 11 133333444444555666677777
Q ss_pred HchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C
Q 005329 502 KVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-D 579 (702)
Q Consensus 502 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~ 579 (702)
.+... .+.++.....+..++...|+.++|.+.+++..++ .|+.... ++.+....++.+++.+.+++..+ .| +
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 3456677888888888999999999998887643 4554322 23333455888899988888777 45 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 580 DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 580 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..+.+++..|...+++++|.+.|+++++..| +...+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55677888899999999999999999999988 456677899999999999999998887654
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=1.1e-08 Score=102.04 Aligned_cols=532 Identities=10% Similarity=0.091 Sum_probs=293.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhh
Q 005329 74 SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMY 153 (702)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 153 (702)
.|-.-++.+.++|+.-.....|++.+..-.+......|...++.....+-++.+..++++.++.. +..-+.-|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 56666666777777777777777776554444445567777777777777777777777766543 33355666677
Q ss_pred hcCCChhHHHHHhccCCC----------CCcchHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCChh--hHHHHHHH
Q 005329 154 TKLGKIELGCRVFDEMPL----------RNVVSWTAIITGLVRAGHNK---EGLIYFAEMWRSKEQGDSY--TFAIVLKA 218 (702)
Q Consensus 154 ~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~--~~~~ll~~ 218 (702)
++.+++++|.+.+..+.. .+-..|+.+-...+++-+.- ..-.+++.+.. .-+|.. .+++|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 777777777777766542 12334555554444443222 22233333322 233433 45666666
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccC---CCCcchHHHHHHHHHhcCChhHHH
Q 005329 219 SADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMS---TRDVISWTTIITSYVQMGEEENAF 295 (702)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 295 (702)
|.+.|.++.|..+|++..+. ..+..-|+.+.+.|+....-.-+..+= +. ..|.. ..-+++-.+
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~e----------d~~dl~~~~ 323 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEE----------DDVDLELHM 323 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChh----------hhhhHHHHH
Confidence 77777777777777766655 333444444555554322111111110 00 00000 001222333
Q ss_pred HHHHHHHHCC--------CCCChhhHHHHHH-HHHccCchHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHhcCC
Q 005329 296 DAFVRMQESD--------VKPNEYTFAAIIS-ASANLARIQWGEQLHAHVLRLGLVD------SLSVANSIMAMYSKCGQ 360 (702)
Q Consensus 296 ~~~~~m~~~g--------~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 360 (702)
..|+.+...+ +..|+......++ .-...|+..+....|.++.+. +.| -...|..+.+.|-..|+
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 3344433321 0111111111111 122345566666667666653 112 23457778888888888
Q ss_pred HHHHHHHHhcCCCCCh-------hhHHHHHHHHHcCCChHHHHHHHHHHHHCCC----------CC-------CHHHHHH
Q 005329 361 LTSTSIVFHGMIRRDI-------ISWSTIIGGYSQGGYEEEAFEYLALMRREGP----------RP-------NEFAFAS 416 (702)
Q Consensus 361 ~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------~p-------~~~~~~~ 416 (702)
++.|..+|++..+-+- .+|......=.+..+++.|+++++.....-- .| +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 8888888888755422 2455555555566778888887776643211 11 1122333
Q ss_pred HHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCH-HHHHHHHHHHHH--
Q 005329 417 VLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES----DDI-VSWTAMINGYAE-- 489 (702)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~-- 489 (702)
.++.--..|-++....+++.+++..+.....+.| ....+-...-++++.++|++-.. |++ ..|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 3444445577888888888888877654333333 33344456678899999987653 454 477777666654
Q ss_pred -cCChHHHHHHHHHchhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhcCCH
Q 005329 490 -HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA--CSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMIDLLCRAGRL 564 (702)
Q Consensus 490 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 564 (702)
....+.|..+|++..+ |++|...-+.-|+.+ =.+.|....|+.+++++.. ++++. ...|+..|.-....=-.
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2468899999999998 778766433333332 2456888899999998754 34443 55666665433322222
Q ss_pred HHHHHHHHhCCC-CCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC-CchhHHHHHHHHHhcCCh
Q 005329 565 SDAENMIENMPH-QKDDVV---WSTLLRACMVQGDVNCGRHTAEKILELH-PS-CAGTHITLANIYAAKGRW 630 (702)
Q Consensus 565 ~~A~~~~~~~~~-~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~ 630 (702)
..-..+|+++.+ -|+..+ .......-.+.|..+.|..+|...-++. |. +...|...-.--.+.|+-
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 223334444333 133222 2223334456777777777777777664 32 344555555555666663
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-10 Score=110.27 Aligned_cols=254 Identities=10% Similarity=0.066 Sum_probs=195.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcC
Q 005329 383 IGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLE--RTAMIKSALINMYSKCG 460 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 460 (702)
..++......+++..-.......|+.-+...-+....+.-...+++.|+.+|+++.+..+- .+..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3445555566777777777777776655555555555556677888888888888876432 14556655543322222
Q ss_pred CHH-HHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 005329 461 SIK-EASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLM 538 (702)
Q Consensus 461 ~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~ 538 (702)
++. -|..++ .+.+-.+.|..++.+-|.-.++.++|...|++..+. .|.. ..|+.+..-|....+...|++-|+.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222 122222 233334556667778888889999999999999874 5654 57888888899999999999999999
Q ss_pred HHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 539 SDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 539 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
+ .+.| |-..|-.|+++|.-.+...-|+-+|+++.. +| |...|.+|+..|.+.++.++|+..|++++..+..+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8 4566 588899999999999999999999999988 44 7889999999999999999999999999999988999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 616 THITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+..|+.+|.+.++.++|..++++.++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999998876
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.3e-11 Score=114.43 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=165.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
.+.+...+.+-|+-.++.++|...|++..+ .-...|+.+..-|...++...|++-++..++-. +-|...|-.|.++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 345666677888888999999999998775 345689999999999999999999999999742 4477899999999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 598 (702)
|...+...=|+-+|+++. .++|+ ...|.+|+++|.+.++.++|++.|.+... +.+...+..|+..+-+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 999999999999999887 56775 89999999999999999999999999877 4456899999999999999999
Q ss_pred HHHHHHHHHH-------hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 599 GRHTAEKILE-------LHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 599 A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
|...|++-++ .+|....+...|+.-+.+.+++++|..+......
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999988 3455556666788889999999999988776654
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.4e-13 Score=134.42 Aligned_cols=254 Identities=14% Similarity=0.090 Sum_probs=117.2
Q ss_pred HHHHHHcccCcHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcC
Q 005329 416 SVLSVCGNMAILEQGKQIHAHVMSIG-LERTAMIKSALINMYSKCGSIKEASQIFYETESD---DIVSWTAMINGYAEHG 491 (702)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 491 (702)
.+...+.+.|+++.|.+++....... .+.+...+..+.......++.+.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44677888999999999996655544 4556667777778888899999999999998853 34566677766 6899
Q ss_pred ChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005329 492 YSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 571 (702)
++++|.+++++..+. .+++..+..++..+...++++++.++++.+......+++...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887654 356667778888899999999999999998755344567888999999999999999999999
Q ss_pred HhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005329 572 ENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEP 649 (702)
Q Consensus 572 ~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 649 (702)
+++.. .| +......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|..++++..+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------ 243 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL------ 243 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc------
Confidence 99988 56 57788999999999999999999999999999999999999999999999999999999998763
Q ss_pred eeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCcccc
Q 005329 650 GWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLVH 698 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 698 (702)
+|.+..+...+..+....|+...+..+..
T Consensus 244 --------------------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 244 --------------------NPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp --------------------STT-HHHHHHHHHHHT-------------
T ss_pred --------------------ccccccccccccccccccccccccccccc
Confidence 57788888888888888888777666553
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-10 Score=114.42 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=175.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005329 379 WSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK 458 (702)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 458 (702)
......-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3334444555666666666666665542 333333433444555555555444444444433 23345566666666777
Q ss_pred cCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005329 459 CGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
.|+.++|.+.|.+... .-...|-.+..+|.-.|..++|+..+...-+. ++-....+--+.--|.+.++...|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 7888888888877553 23457888888888888888888877665542 1222222333444577788888888888
Q ss_pred HHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005329 536 NLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--------QK-DDVVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 536 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
.++. ++.|+ +..++-+.-.....+.+.+|..+|+.... ++ -.++++.|+.+|++.+++++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 8776 66675 66677777777778888888888877653 12 345678888888889999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 606 ILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 606 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++.+.|.++.++..++.+|.-.|+++.|++.|.+....
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99988988999999999999999999998888887653
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=4.7e-11 Score=122.17 Aligned_cols=285 Identities=10% Similarity=-0.007 Sum_probs=183.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHH--HHHHHHHHhcCCHHHHH
Q 005329 288 MGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVA--NSIMAMYSKCGQLTSTS 365 (702)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~ 365 (702)
.|+++.|.+.+....+.+-. ....|.....+..+.|+++.+...+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555443332100 1111222223335555566666665555443 2222211 12244555666666666
Q ss_pred HHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC
Q 005329 366 IVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGL 442 (702)
Q Consensus 366 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 442 (702)
..++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++ .....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 66665532 2445666667777777777777777777776654322 11111100
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHH
Q 005329 443 ERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVL 519 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 519 (702)
..|..++.......+.+...++++.++ ..++.....+...+...|+.++|.+++++..+. +|+.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 011122222333345566666666665 357788888999999999999999999988873 5555322 33
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHH
Q 005329 520 TACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 597 (702)
.+....++.+++.+..+...++ .|+ ...+.++...+.+.|++++|.+.|+.+.. .|+...+..+...+.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 4445669999999999998865 555 66788999999999999999999999988 799999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 005329 598 CGRHTAEKILELH 610 (702)
Q Consensus 598 ~A~~~~~~~~~~~ 610 (702)
+|.+++++.+.+-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998764
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.6e-10 Score=119.05 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=55.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 005329 287 QMGEEENAFDAFVRMQESDVKPNEYTF-AAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTS 365 (702)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 365 (702)
..|+++.|.+.+.+..+. .|++..+ -....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 3433222 2333445555666666666666554332222222222344444455555555
Q ss_pred HHHhcCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005329 366 IVFHGMIR--R-DIISWSTIIGGYSQGGYEEEAFEYLALMRRE 405 (702)
Q Consensus 366 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (702)
..++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 44444422 1 3334444444444555555555555444444
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=6.6e-11 Score=121.81 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-H--HHH
Q 005329 511 DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEH---YGCMIDLLCRAGRLSDAENMIENMPH-QKD-D--VVW 583 (702)
Q Consensus 511 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~--~~~ 583 (702)
+...+..+...+...|+.++|.+.+++..++ .|+... .....-.....++.+.+.+.++...+ .|+ + ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 5556666666677777777777777776643 344321 11111112234566667777766655 343 3 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 584 STLLRACMVQGDVNCGRHTAE--KILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+++..|.+.|++++|.+.|+ .+++..| ++..+..++.++.+.|+.++|.+++++...
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777888888888888888 4666667 444466888888888888888887776543
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=4.2e-11 Score=114.18 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=165.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666778888899999999999987652 356788888999999999999999999988753 4455677888888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRACMVQGDVNCG 599 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A 599 (702)
+...|++++|.+.++.+............+..+..++...|++++|...+++... . .+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999876422222356777888999999999999999999876 3 3567888899999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 600 RHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
...++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999988999999999999999999999998887653
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.1e-09 Score=103.39 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=178.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005329 288 MGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIV 367 (702)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 367 (702)
.|+|.+|.+...+-.+.+-.| ...|..-..+....|+.+.+..++.++-+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777765554222 3334444555666777777777777776654455556666666666777777777666
Q ss_pred HhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCC
Q 005329 368 FHGM---IRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLER 444 (702)
Q Consensus 368 ~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (702)
.+++ ...+.........+|.+.|++.....++..|.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 6554 334566777777888888888888888888887775444321110
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 01122223333333333344444555554 245666666777777788888888887777776666662 12233
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
+.+-++...-++..+...+..+-. +..+.+|+..|.+.+.|.+|.+.|+...+ +|+..+|+-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 556666666666666555443333 36667777777777777777777776665 677777777777777777777777
Q ss_pred HHHHHHHHh
Q 005329 601 HTAEKILEL 609 (702)
Q Consensus 601 ~~~~~~~~~ 609 (702)
++.++.+-+
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 777776643
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=1e-07 Score=95.35 Aligned_cols=491 Identities=13% Similarity=0.097 Sum_probs=312.9
Q ss_pred chhHHHHHHHhhhcCCChhHHHHHhccCC-----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005329 142 SVFVGSALLDMYTKLGKIELGCRVFDEMP-----LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVL 216 (702)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 216 (702)
-+..|-.-+....++|++......|+... ......|...+...-..+-++-++.+|++.++- ++..-..-|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 45667777777888999999988888654 245567988899888999999999999998653 334466677
Q ss_pred HHHhccCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhhCCCh---HHHHHHHhccCCC--C--cchHHHHHH
Q 005329 217 KASADSGALNFGREIHTIMLKRG------FDVVSFVANSLATMYSKCGKL---DYSLRLFERMSTR--D--VISWTTIIT 283 (702)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~ 283 (702)
..++..+++++|.+.+...+... .+.+...|..+.+..++.-+. -....+++.+..+ | ...|++|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 88889999999999988776532 255666777766666654332 2344555555432 2 356999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCc----------------------hHHHHHHHHHHHHhCC
Q 005329 284 SYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLAR----------------------IQWGEQLHAHVLRLGL 341 (702)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~ 341 (702)
-|++.|.+++|.++|++.... ..+..-|..+.++|+.-.. ++....-|+.+...+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999988765 2344455555555543211 1222222333222210
Q ss_pred -----------CCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC---C------ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 005329 342 -----------VDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---R------DIISWSTIIGGYSQGGYEEEAFEYLAL 401 (702)
Q Consensus 342 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (702)
+.+...|..- .-+..|+..+....|.+.+. | -...|..+...|-..|+.+.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1111111111 11223555555555555421 1 223677888888889999999999988
Q ss_pred HHHCCCCCC---HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC-----------C------CChhHHHHHHHHHHhcCC
Q 005329 402 MRREGPRPN---EFAFASVLSVCGNMAILEQGKQIHAHVMSIGL-----------E------RTAMIKSALINMYSKCGS 461 (702)
Q Consensus 402 m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~------~~~~~~~~li~~~~~~g~ 461 (702)
..+-..+.- ..+|..-...-.+..+++.|..+.+.+..... + .+..+|..+++..-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 866433221 12333333344455677777777666543211 1 134455556666667788
Q ss_pred HHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhc---cCcHHHHHHH
Q 005329 462 IKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSH---AGLVDLGFHY 534 (702)
Q Consensus 462 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g~~~~A~~~ 534 (702)
++....+|+++.. ..+...-.....+-.+.-++++.+.|++-+..=-.|+. ..|+..+.-+.+ ..+.+.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888888887764 23333333333445667789999999887765334554 356666655532 3478999999
Q ss_pred HHHhHHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 535 FNLMSDKYGFVPS--KEHYGCMIDLLCRAGRLSDAENMIENMPHQ--K--DDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 535 ~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
|+++.+ +.+|. ...|-.....=.+.|-...|..+++++... + ....|+..+.--...=-.....++|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999986 56665 233333344445678889999999998773 2 234666666544433344566789999999
Q ss_pred hCCCCch--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 609 LHPSCAG--THITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 609 ~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.-|++-. .....+..-.+.|..+.|..++....+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9886543 344457777888999999998876654
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=6.4e-10 Score=101.71 Aligned_cols=308 Identities=13% Similarity=0.155 Sum_probs=160.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHH
Q 005329 287 QMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLG-LVDSLSVANSIMAMYSKCGQLTSTS 365 (702)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 365 (702)
-+++.++|.+.|-+|.+.. +-+..+-.+|.+.|.+.|..+.|++++..+.+.. ...+..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr------------------- 106 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQR------------------- 106 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHH-------------------
Confidence 3567777777777777632 1222233345555666666666666666555431 111000
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCC
Q 005329 366 IVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERT 445 (702)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (702)
..+.-.|..-|...|-+|.|..+|..+.+.|.. -......++..|-...++++|.++-..+.+.+..+.
T Consensus 107 ----------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 107 ----------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred ----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 112223444455555555555555555443211 112233333334444444444444333333322211
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhc
Q 005329 446 AMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSH 524 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~ 524 (702)
.. .+.. .|.-+...+....+.+.|..++++..+. .|+.+ .-..+.+....
T Consensus 176 ~~---eIAq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 176 RV---EIAQ------------------------FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELA 226 (389)
T ss_pred hh---HHHH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHh
Confidence 00 0111 1223444444555666666666666553 23332 22334455566
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
.|+++.|.+.++...+. .|+ ..+...|..+|...|+.++...++.++.. .+....-..+........-.+.|..
T Consensus 227 ~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 227 KGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQA 303 (389)
T ss_pred ccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHH
Confidence 67777777777766654 343 55666667777777777777777766655 4444455555555444555566677
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH--hcCChHHHHHHHHHHHhCCCccCCeeeEEEEC
Q 005329 602 TAEKILELHPSCAGTHITLANIYA--AKGRWREAAEVRKMMRSKGVIKEPGWSRIKVK 657 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 657 (702)
.+.+-+...|.-...|..+..-+. .-|++.+....++.|....++..|.+.....+
T Consensus 304 ~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 304 YLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred HHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 777777777744444444333333 23567888888888888777777766555443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.2e-09 Score=102.13 Aligned_cols=279 Identities=9% Similarity=0.047 Sum_probs=177.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005329 344 SLSVANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSV 420 (702)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 420 (702)
+..+.....+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 33333344444445555555555555543322 223333344555555555555555555543 22233455555555
Q ss_pred HcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHH
Q 005329 421 CGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAI 497 (702)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 497 (702)
|...|+.++|++.+.......... ...|-.+...|.-.|..++|...+....+ .....+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 555566666666665554332111 22445566666677777777666654321 11111122344577788888898
Q ss_pred HHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCC----CChhhHHHHHHHHHhcCCHHHHHHHH
Q 005329 498 HLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY-GFV----PSKEHYGCMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 498 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~ 571 (702)
++|.+... +.| |+..++-+.-.....+.+.+|..+|+...... .+. -...+++.|+.+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88888775 444 56677777666667888899998888776321 111 13456888999999999999999999
Q ss_pred HhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 005329 572 ENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAA 626 (702)
Q Consensus 572 ~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 626 (702)
+.... +.+..++.+++..|...|+++.|.+.|.+++.+.|++..+-..|..+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99877 56888999999999999999999999999999999998877777765544
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.1e-09 Score=98.35 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=198.7
Q ss_pred CCChHHHHHHHhccCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHH
Q 005329 257 CGKLDYSLRLFERMSTRDVISWT---TIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLH 333 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 333 (702)
+.+.++|.++|-+|.+.|..++. +|.+.|-+.|..|.|+++-+.+.++ ||. |+..=+.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl------------- 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLAL------------- 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHH-------------
Confidence 46889999999999877766654 5778899999999999999998874 432 332222111
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 005329 334 AHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRD---IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN 410 (702)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 410 (702)
-.|..-|...|-+|.|+.+|..+.+.+ ..+...|+..|-+..++++|+++-+++.+.+..+.
T Consensus 111 ---------------~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 111 ---------------QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred ---------------HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 114445666777777777777776532 34667789999999999999999999988665544
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---HHHHHHHHHHH
Q 005329 411 EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDD---IVSWTAMINGY 487 (702)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~ 487 (702)
..-.. ..|..|...+....+++.|..++.+..+.| +..--.+...+
T Consensus 176 ~~eIA-------------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 176 RVEIA-------------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred hhHHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 33221 123445556666677777777777665432 33344566778
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 005329 488 AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 567 (702)
...|+++.|++.++...+.+..--+.+...|..+|...|+.++....+..+.+. .+....-..+.+.-....-.+.|
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHH
Confidence 888999999999988887643333457778888999999999999998888754 45555555566655555555666
Q ss_pred HHHH-HhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh
Q 005329 568 ENMI-ENMPHQKDDVVWSTLLRACM---VQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 568 ~~~~-~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 609 (702)
..++ +.+..+|+...+..++..-. ..|...+....+++++..
T Consensus 302 q~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 302 QAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 5554 45555899988888888765 344556666666766653
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.5e-09 Score=104.83 Aligned_cols=335 Identities=10% Similarity=-0.037 Sum_probs=193.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCc-hhHHHHHHHhhh
Q 005329 77 TLISGYVKAMDSIEALALFSRVWVEPQMNMD-PFILSLALKACALNVNVNYGESLHGYTVKTGFVNS-VFVGSALLDMYT 154 (702)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 154 (702)
....-|.++|.+++|+..|.+.+ .+.|+ +.-|.....+|...|+++...+.-...++.+ |+ +.++....+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI---~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI---ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH---hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 34456788999999999999998 45777 7778888888999999998888777666654 44 345666667777
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHH--------H-HHHC--CCCCChhhHHHHHHHHhccC
Q 005329 155 KLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFA--------E-MWRS--KEQGDSYTFAIVLKASADSG 223 (702)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~-m~~~--~~~p~~~~~~~ll~~~~~~~ 223 (702)
..|++++|..-. |-.+++.++..+.-.--+.+++. + |.++ .+-|+.....+.+..+-..-
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788888876532 22222222222211111112221 1 2212 23455554444444332110
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh----hh-CCChHHHHHHHhccC-----CC-----Cc------chHHHHH
Q 005329 224 ALNFGREIHTIMLKRGFDVVSFVANSLATMY----SK-CGKLDYSLRLFERMS-----TR-----DV------ISWTTII 282 (702)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~-~g~~~~A~~~~~~~~-----~~-----~~------~~~~~li 282 (702)
. .....+.......+..++ .. ...+..|...+.+-. .+ |. .+...-.
T Consensus 266 ~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 K------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred c------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0 000000000111111111 10 001222222221110 01 11 1111111
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005329 283 TSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLT 362 (702)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 362 (702)
..+.-.|+.-.|..-|+..+.....++. .|.-+...|....+.++..+.|....+.+ +.++.+|..-..++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 2234467888888888888876433222 26667777888888888888888888776 445566666667777778888
Q ss_pred HHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH
Q 005329 363 STSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS 439 (702)
Q Consensus 363 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (702)
.|..-|++.+.- ++..|..+.-+.-+.+++++++..|++..+. ++--+..|+.....+...++++.|.+.++..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888877543 4456666666666778888888888887765 444455677777777777777777777777765
Q ss_pred h
Q 005329 440 I 440 (702)
Q Consensus 440 ~ 440 (702)
.
T Consensus 491 L 491 (606)
T KOG0547|consen 491 L 491 (606)
T ss_pred h
Confidence 4
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.9e-09 Score=101.90 Aligned_cols=277 Identities=15% Similarity=0.135 Sum_probs=183.2
Q ss_pred cCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 005329 358 CGQLTSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIH 434 (702)
Q Consensus 358 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 434 (702)
.|++.+|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34555555554443221 222333333444455666666666666655322334444444445555566666666655
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHc
Q 005329 435 AHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESD-----------DIVSWTAMINGYAEHGYSQEAIHLFEKV 503 (702)
Q Consensus 435 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (702)
..+.+.+.. .+.......++|.+.|++.....++.++.+. ...+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554422 3444555666677777777777666666542 1236777777666666666666677776
Q ss_pred hhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH
Q 005329 504 PMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDV 581 (702)
Q Consensus 504 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~ 581 (702)
... .+-++..-.+++.-+.+.|+.++|.++..+..++ +.+|+ ...++ ...+-++.+.-.+..+...+ +.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 653 4556666777888889999999999999988877 66665 22222 33455666655555555444 23457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+.+|+..|.+++.+.+|.+.++.+++..| +...|..++.++.+.|+.++|.+.+++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 889999999999999999999999999999 899999999999999999999999988764
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2e-08 Score=102.76 Aligned_cols=398 Identities=14% Similarity=0.106 Sum_probs=262.1
Q ss_pred hCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 005329 238 RGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFA 314 (702)
Q Consensus 238 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 314 (702)
..+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|..+++.-....-.|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34566888899999999999999999999998763 245679999999999999999999998876543335444443
Q ss_pred HHHHH-H-HccCchHHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHhcCCCC---
Q 005329 315 AIISA-S-ANLARIQWGEQLHAHVLRL--GL--VDSLSVANSIMAMYSKC-----------GQLTSTSIVFHGMIRR--- 374 (702)
Q Consensus 315 ~ll~~-~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~--- 374 (702)
.++.. | -+.+..+++..+-..+.+. +. ......+..+.-+|... ....++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333 3 2456677777666666552 11 12334455555555432 1134556666666332
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH-hCCCCChhHHHHHH
Q 005329 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS-IGLERTAMIKSALI 453 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 453 (702)
|..+.-.+.--|+..++.+.|++..++..+.+..-+...+..+.-.+...+++..|+.+.+.... .|.+... ...-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhh
Confidence 33333345556777889999999999999887777888888888888889999999998776654 2221110 01111
Q ss_pred HHHHhcCCHHHHHHH-------Hh-------------------hCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHH
Q 005329 454 NMYSKCGSIKEASQI-------FY-------------------ETE----SD--DIVSWTAMINGYAEHGYSQEAIHLFE 501 (702)
Q Consensus 454 ~~~~~~g~~~~A~~~-------~~-------------------~~~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (702)
..-..-++.+++... |+ .+. ++ .+.++..+..-... +...+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc-
Confidence 111223444444332 22 111 00 11122222211111 111110000
Q ss_pred HchhCCCCCCHH--------HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005329 502 KVPMVGLRPDSV--------TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIE 572 (702)
Q Consensus 502 ~m~~~g~~p~~~--------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (702)
.+......|... .|......+...+..++|...+.++. ++.|- ...|.-.+..+...|.+++|.+.|.
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 022222223221 23445556778888899988887775 34554 7777777888999999999999999
Q ss_pred hCCC-CC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 573 NMPH-QK-DDVVWSTLLRACMVQGDVNCGRH--TAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 573 ~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.... .| ++.+..+++..+.+.|+...|.. ++..+++.+|.++..|..||.++.+.|+.++|.+.|....+.
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8877 45 56788999999999999888888 999999999999999999999999999999999999988763
No 61
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.2e-07 Score=93.74 Aligned_cols=583 Identities=12% Similarity=0.094 Sum_probs=325.9
Q ss_pred hhccCcccccccc--ccCcccCchhhhhHHHHHHccCChHHHHHHhhcCC-CCCcchHHHHHHHHHcCCChhHHHHHHHH
Q 005329 21 CTERRPLLLFQGT--QLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMT-QRDEISWTTLISGYVKAMDSIEALALFSR 97 (702)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 97 (702)
|-++.+++...+. .+..+.-..+.+..+..|+..|.++++.-...+.- +|| |-.+++...+ -.++.+.++...
T Consensus 459 SEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~ 534 (1666)
T KOG0985|consen 459 SEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMM 534 (1666)
T ss_pred hHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHH
Confidence 3344555544443 33445566667888999999999999887776653 344 5566666655 578888888877
Q ss_pred hhhCCCCCCCHHHHHHHHHHhhccCCchhhhH-------------------HHHHHHHhcC----------CCchhHHHH
Q 005329 98 VWVEPQMNMDPFILSLALKACALNVNVNYGES-------------------LHGYTVKTGF----------VNSVFVGSA 148 (702)
Q Consensus 98 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-------------------~~~~~~~~~~----------~~~~~~~~~ 148 (702)
+.+..+ ...-.+.+...+...+....+.. +++.-...++ ..+.+.+..
T Consensus 535 l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~ 611 (1666)
T KOG0985|consen 535 LVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAE 611 (1666)
T ss_pred hhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHH
Confidence 776533 22223333333333222222222 2222111111 111223566
Q ss_pred HHHhhhcCCChhHHHHHhccCCC--CCcchHH----HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPL--RNVVSWT----AIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADS 222 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 222 (702)
+.+.|.+.|-...|++.+..+.. +.++.-+ .-+-.|...-.++.+.+.++.|...++.-|..+...+..-|...
T Consensus 612 IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eq 691 (1666)
T KOG0985|consen 612 IAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQ 691 (1666)
T ss_pred HHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67778888988889888887651 2111111 11234555567888888899988887777777766666656555
Q ss_pred CChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC-------------------
Q 005329 223 GALNFGREIHTIMLKR-----------GFDVVSFVANSLATMYSKCGKLDYSLRLFERMST------------------- 272 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------- 272 (702)
=-.+...++|+....- ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 692 lg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~Dql 771 (1666)
T KOG0985|consen 692 LGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQL 771 (1666)
T ss_pred hCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccC
Confidence 5555666666665542 2455666667788888999988888887764320
Q ss_pred C------------CcchH------HHHHHHHHhc----------------------------------------------
Q 005329 273 R------------DVISW------TTIITSYVQM---------------------------------------------- 288 (702)
Q Consensus 273 ~------------~~~~~------~~li~~~~~~---------------------------------------------- 288 (702)
| |.+.| ...|..|.+.
T Consensus 772 PLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkR 851 (1666)
T KOG0985|consen 772 PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKR 851 (1666)
T ss_pred ceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhh
Confidence 0 11111 1122233332
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCc-hHHHH---------HHHHHHHHh-----------C-------
Q 005329 289 GEEENAFDAFVRMQESDVKPNEYTFAAIISASANLAR-IQWGE---------QLHAHVLRL-----------G------- 340 (702)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~---------~~~~~~~~~-----------~------- 340 (702)
++..--..+++.....| ..|..|++.+...|...++ ++.-. -+-+...+. |
T Consensus 852 NRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI 930 (1666)
T KOG0985|consen 852 NRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELI 930 (1666)
T ss_pred hhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHH
Confidence 22222333334444444 2455556555555443332 11110 000000000 0
Q ss_pred -CCCchHHHHHHHHHHHhcCCHHHHHHHHhcC-----------------CCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 005329 341 -LVDSLSVANSIMAMYSKCGQLTSTSIVFHGM-----------------IRRDIISWSTIIGGYSQGGYEEEAFEYLALM 402 (702)
Q Consensus 341 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 402 (702)
+....+.|....+.+.+..+.+-=.+++.+- ...|+...+..+.++...+-+.+-++++++.
T Consensus 931 ~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKI 1010 (1666)
T KOG0985|consen 931 NVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKI 1010 (1666)
T ss_pred HhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 0111223333333344444433322332111 1114445556667777777777777777776
Q ss_pred HHCCCC--CCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------
Q 005329 403 RREGPR--PNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE------- 473 (702)
Q Consensus 403 ~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------- 473 (702)
.-.+.. -+...-+.++-. +-..+...+.+..+.+..... |+ +.......+-+++|..+|++..
T Consensus 1011 vL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1011 VLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred hcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 532211 111111111111 111222222222222222111 00 1112222233344444443321
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005329 474 ------------------SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 474 ------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
-..+..|..+..+-.+.|...+|++-|=+ .-|+..|..++..+.+.|.+++-..++
T Consensus 1083 VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1083 VLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 02456799999999999999999988744 236678999999999999999999999
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 536 NLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
....++ .-+|.+. +.|+-+|++.++..+-++++. -|+..-...+++-|...|.++.|.-+|. +.+
T Consensus 1157 ~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vS 1221 (1666)
T KOG0985|consen 1157 LMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVS 1221 (1666)
T ss_pred HHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------Hhh
Confidence 888666 5566554 568999999999988776653 5788888889999999999998888776 455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 616 THITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
.|..|+..+...|.+..|...-.++
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6777888888888887776554443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=5.3e-10 Score=113.58 Aligned_cols=231 Identities=16% Similarity=0.204 Sum_probs=170.1
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHh-----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------
Q 005329 412 FAFASVLSVCGNMAILEQGKQIHAHVMSI-----GL-ERT-AMIKSALINMYSKCGSIKEASQIFYETES---------- 474 (702)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 474 (702)
.+...+...|...|+++.|..+++...+. |. .|. ..+.+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555667777777777777777666553 21 111 12334467788888888888888887652
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHchh-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--C
Q 005329 475 D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPM-----VGLR-PDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYG--F 544 (702)
Q Consensus 475 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~ 544 (702)
| -..+++.|..+|.+.|++++|...+++..+ .|.. |.. ..++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234778888889999999988877776543 1222 222 2466777788999999999999988765543 2
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Q 005329 545 VPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH-------Q--K-DDVVWSTLLRACMVQGDVNCGRHTAEKILEL- 609 (702)
Q Consensus 545 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 609 (702)
.++ ..+++.|...|...|++++|.++++++.. + + ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 56789999999999999999999998765 1 1 2457788999999999999999999988764
Q ss_pred ---CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 610 ---HPS---CAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 610 ---~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+|+ -..+|.+|+.+|.++|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 456888999999999999999999988763
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=6.8e-09 Score=96.07 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=108.3
Q ss_pred hhcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHH
Q 005329 153 YTKLGKIELGCRVFDEMP---LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGR 229 (702)
Q Consensus 153 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 229 (702)
+.+.|++++|...+..+. .++...+--|.-.+.-.|.+.+|..+-... +-++-.-..++...-+.++-++-.
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHH
Confidence 345555555555554433 233344444444444445555555444332 112222222333333444444444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC--CCcchHHHH-HHHHHhcCChhHHHHHHHHHHHCCC
Q 005329 230 EIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST--RDVISWTTI-ITSYVQMGEEENAFDAFVRMQESDV 306 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~ 306 (702)
.+.+.+.+. ..-.-+|.+..-..-.+++|.+++.++.. |+-...|.. .-+|.+..-++-+.+++.--...
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-- 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-- 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--
Confidence 444433321 11122333333333456777777776653 333344443 34566777777777777666554
Q ss_pred CCCh-hhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-----CCHHHHHHHHhcCCCCChhhHH
Q 005329 307 KPNE-YTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKC-----GQLTSTSIVFHGMIRRDIISWS 380 (702)
Q Consensus 307 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~ 380 (702)
.||+ ...+.......+.=+-..+++-.+.+.+.+-.. | -.+.-.++. .+-+.|+.++-.+...=+.+--
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 3333 333333333333323333333333333322111 0 011222222 2335566665554433333444
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 005329 381 TIIGGYSQGGYEEEAFEYLALM 402 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m 402 (702)
.|+--|.+++++.+|..+.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hheeeecccccHHHHHHHHhhc
Confidence 5666678888888888887765
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.1e-08 Score=102.62 Aligned_cols=308 Identities=13% Similarity=0.034 Sum_probs=192.6
Q ss_pred hHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhc
Q 005329 292 ENAFDAFVRMQESD-VKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHG 370 (702)
Q Consensus 292 ~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (702)
.++++.+++..+.+ -.|+...|.. --++..++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46777777776654 2333333333 34566778888888888888887777888888888888888888888888776
Q ss_pred CCCCChhhHH---HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH--hCCCCC
Q 005329 371 MIRRDIISWS---TIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS--IGLERT 445 (702)
Q Consensus 371 ~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 445 (702)
....-...++ .-+..-..-++.++++.....+..- --+...+.. .++-....+....+.- ......
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcccccCccccccc
Confidence 5332111111 1122222346666666666555431 000000000 0111111111111110 011112
Q ss_pred hhHHHHHHHHHH---hcCCHHHHHHHHhhCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHH
Q 005329 446 AMIKSALINMYS---KCGSIKEASQIFYETESDD------IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFM 516 (702)
Q Consensus 446 ~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 516 (702)
+.++..+..... +.-..+..+..+...+.|+ ...|......+.+.+..++|...+.+.... .+.....|.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~ 688 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYY 688 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHH
Confidence 222322222211 1111112222222222233 235667778888999999999888887753 233456777
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHH
Q 005329 517 GVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAEN--MIENMPH--QKDDVVWSTLLRACM 591 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~p~~~~~~~l~~~~~ 591 (702)
.....+...|...+|.+.|.... -+.|+ +.+..++..++.+.|+..-|.. ++.++.+ +.+...|..++..+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 77778888999999999999887 67887 8889999999999998877777 8998887 446889999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCc
Q 005329 592 VQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
+.|+.+.|.+.|..++++.+.+|
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999987665
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.4e-08 Score=94.50 Aligned_cols=305 Identities=10% Similarity=-0.032 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHHHHc--cCchHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh---HH
Q 005329 307 KPNEYTFAAIISASAN--LARIQWGEQLHAHVLR-LGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIIS---WS 380 (702)
Q Consensus 307 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 380 (702)
.|...+....+.+++. .++-..+...+-.+.. .-++.+......+.+.+...|+.++|+..|++...-|+.+ ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 4444455555555433 3444444444444433 3356677888888999999999999999998874443332 22
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005329 381 TIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG 460 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 460 (702)
.....+.+.|+.++...+...+....- -....|-.-........+++.|..+-+..++.... +...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 233445677888887777777654321 11122222223334556777777777777665432 3333434455667788
Q ss_pred CHHHHHHHHhhCC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHH-HHH-hccCcHHHHHHHH
Q 005329 461 SIKEASQIFYETE--S-DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVL-TAC-SHAGLVDLGFHYF 535 (702)
Q Consensus 461 ~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~-~~~g~~~~A~~~~ 535 (702)
++++|.-.|+... . -+..+|..|+.+|...|++.+|.-+-+..... ++.+..+...+. ..| .....-++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 8888888887654 2 47788888888888888888887776665543 344455555442 233 2334457788888
Q ss_pred HHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 536 NLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 536 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
+... .+.|+ ....+.+...+...|..++++.++++... .||....+.|++.+...+.+.+|.+.|..++.++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8765 56777 66777788888888888888888888776 6888888888888888888888888888888888866
Q ss_pred chhH
Q 005329 614 AGTH 617 (702)
Q Consensus 614 ~~~~ 617 (702)
..+.
T Consensus 505 ~~sl 508 (564)
T KOG1174|consen 505 KRTL 508 (564)
T ss_pred hHHH
Confidence 5443
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=8.2e-10 Score=96.47 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDL 557 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 557 (702)
+...|.-.|...|++..|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+++. .+.|+ ..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 45567788999999999999999999853 3345688889999999999999999999987 45776 8888999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHH
Q 005329 558 LCRAGRLSDAENMIENMPHQKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREA 633 (702)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 633 (702)
+|..|++++|...|+++...|. ..+|..++....+.|+.+.|.+.+++.++.+|+++.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999988653 568888998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005329 634 AEVRKMMRSKGV 645 (702)
Q Consensus 634 ~~~~~~~~~~~~ 645 (702)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999877654
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=105.55 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=148.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc
Q 005329 451 ALINMYSKCGSIKEASQIFYETES--D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL 527 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 527 (702)
.|-..|.+..++..|+.+|.+..+ | |+.....+...+-..++.++|.++|+...+.. +.+......+...|...++
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~ 339 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNN 339 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCC
Confidence 344555666666666666665442 2 33344456667777788888888888877642 3344566666677778888
Q ss_pred HHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 005329 528 VDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH---QK--DDVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
.+.|..+|+++.+- |+. +++.|+.+.-+|.-.+++|-++..|+++.. +| ....|-.+.......||+..|.+.
T Consensus 340 PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 340 PEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred hHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 89999999888776 643 678888888888888889888888888766 34 356899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 603 AEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 603 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
|+-++..+|++.+.+++|+-+-.+.|+.++|..++..+....+
T Consensus 418 frlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999999998876543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.8e-07 Score=92.91 Aligned_cols=432 Identities=11% Similarity=0.098 Sum_probs=262.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHhh--h
Q 005329 181 ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANS--LATMYS--K 256 (702)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~ 256 (702)
+..+..+|++++|.....++...+ +-|...+..=+-++.+.+.+++|..+.+.-.. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 556677899999999999998765 44555666677778888999998855543211 112222 345555 7
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCchHHHHHHHHH
Q 005329 257 CGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPN-EYTFAAIISASANLARIQWGEQLHAH 335 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 335 (702)
.+..++|...++.....+..+...-...+-+.|++++|+++|+.+.+.+..-- ...-..++.+-.. ..+ ..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HH
Confidence 89999999999966655655666667788899999999999999988763221 1111222221111 011 01
Q ss_pred HHHhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCh----------hhHHHHHHHHHcCCChHH
Q 005329 336 VLRLGLVDS---LSVANSIMAMYSKCGQLTSTSIVFHGM--------IRRDI----------ISWSTIIGGYSQGGYEEE 394 (702)
Q Consensus 336 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~~ 394 (702)
+......|+ ...|| ....++..|++.+|+++++.. .+.|. ..--.|.-.+...|+..+
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222332 12333 334567789999999999876 22111 122345566778999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH----HHHHHHHcccCcHHH--HHHHHHH-----------HHHhCCCCChhHHHHHHHHHH
Q 005329 395 AFEYLALMRREGPRPNEFAF----ASVLSVCGNMAILEQ--GKQIHAH-----------VMSIGLERTAMIKSALINMYS 457 (702)
Q Consensus 395 a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~ 457 (702)
|..++...++.. .+|.... |.++ ++....++-. ....++. +....-......-+.++.+|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999998875 3343222 2222 2222111111 1111111 11000000111112233333
Q ss_pred hcCCHHHHHHHHhhCCCCC-HHHHHHHHHHH--HHcCChHHHHHHHHHchhCCCCCCH--HHHHHHHHHHhccCcHHHHH
Q 005329 458 KCGSIKEASQIFYETESDD-IVSWTAMINGY--AEHGYSQEAIHLFEKVPMVGLRPDS--VTFMGVLTACSHAGLVDLGF 532 (702)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~ 532 (702)
.+..+.+.++-...+... ...+.+++... ++...+.++.+++...-+. .|.. ...-..+.-....|+++.|.
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 355666777666666432 23344444332 2333577888888777654 3443 34445556667899999999
Q ss_pred HHHH--------HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHH----HHHHHHHHHHhcCC
Q 005329 533 HYFN--------LMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-----QKDDV----VWSTLLRACMVQGD 595 (702)
Q Consensus 533 ~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~~~----~~~~l~~~~~~~g~ 595 (702)
+++. .+. .+.-.+.+..+++..+.+.++-+.|..++.++.. .+... ++..+...-.++|+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9998 443 2333466777888889988887777777766544 22222 34444444558899
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005329 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRK 638 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (702)
-++|...++++++.+|++......++.+|++. +.+.|..+-+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999999999999999999876 4566655443
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=5.2e-07 Score=91.60 Aligned_cols=499 Identities=14% Similarity=0.110 Sum_probs=287.7
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHh-------------hccCCchhhhHHHHHHH-------Hhc-C
Q 005329 82 YVKAMDSIEALALFSRVWVEPQMNMDPF-ILSLALKAC-------------ALNVNVNYGESLHGYTV-------KTG-F 139 (702)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~-------------~~~~~~~~a~~~~~~~~-------~~~-~ 139 (702)
-...|+++.|..+++.. ...|+.. .|..+.... +.-|++..++.+++... +.| -
T Consensus 454 aid~~df~ra~afles~----~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL----EMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred ccccCchHHHHHHHHhh----ccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 45678899999888877 3456655 455554443 34444555554444322 111 1
Q ss_pred CCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005329 140 VNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKAS 219 (702)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 219 (702)
-.+.+-..+++..+ ..++.+|+.+|-+-. .-..-|..|....+|++++.+-+.. |.+.-...-.+.++++
T Consensus 530 gt~fykvra~lail--~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAIL--EKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQAL 599 (1636)
T ss_pred CchHHHHHHHHHHH--HhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHH
Confidence 11222223333333 356778888775422 2334567777778888888775542 2222222334456666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhcc--CCCCcchHHHHHHHHHhcCChhHHHHH
Q 005329 220 ADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERM--STRDVISWTTIITSYVQMGEEENAFDA 297 (702)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (702)
...|+-+.|-++-. .+-. --+-|..|.+.|....|.+....= ...|......+..++.+..-+++|-++
T Consensus 600 ~dt~qd~ka~elk~--------sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdl 670 (1636)
T KOG3616|consen 600 MDTGQDEKAAELKE--------SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDL 670 (1636)
T ss_pred HhcCchhhhhhhcc--------ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhH
Confidence 66777666655421 1111 234567788888877776654221 122333344444444444334444444
Q ss_pred HHHHHHC---------C-------------CCCChhhHH-HHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005329 298 FVRMQES---------D-------------VKPNEYTFA-AIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAM 354 (702)
Q Consensus 298 ~~~m~~~---------g-------------~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (702)
|+++..- | ++...++.. ..-..+...|+++.|..-|-+.. .....+.+
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaiea 741 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEA 741 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHH
Confidence 4333210 0 010111110 11112223344444433332221 11223445
Q ss_pred HHhcCCHHHHHHHHhcCCCCChh--hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 005329 355 YSKCGQLTSTSIVFHGMIRRDII--SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQ 432 (702)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 432 (702)
.....++.+|+.+++.+...++. -|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 56677888888888888766543 46777888999999999999887642 24556778889999998887
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH
Q 005329 433 IHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS 512 (702)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (702)
+-.+. +|.......|-+-..-+-+.|++.+|.++|-.+..|+. -|..|-+.|..++.+++.++- .|+.
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~ 880 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDH 880 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhh
Confidence 75543 35556667777777777888999999999988888875 356788999999998888763 3443
Q ss_pred --HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHH--
Q 005329 513 --VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH----QKDDVVWS-- 584 (702)
Q Consensus 513 --~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~-- 584 (702)
.|...+..-+...|+...|.+.|-+.. -|.+-+++|-..+.|++|.++-+.--- +.-...|.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 466667777888899999888776653 245567777778888888777654221 00011111
Q ss_pred ----HHHHHHHhcCCHHHHHHH------HHHHHH-----hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 585 ----TLLRACMVQGDVNCGRHT------AEKILE-----LHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 585 ----~l~~~~~~~g~~~~A~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.....+-++|-.+.|+.. |+-+++ .....+..+..++.-+...|++++|-+.+-+..+.
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 112222334433333322 111222 12335677888888899999999998777666553
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=105.29 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=166.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005329 382 IIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGS 461 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 461 (702)
+.++|.+.|.+.+|.+-|+.-.+. .|-..||..+-.+|.+...+..|..++.+-.+. .+.+.....-+...+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444443332 223333333444444444444444444433332 11222222334556666778
Q ss_pred HHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005329 462 IKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLM 538 (702)
Q Consensus 462 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 538 (702)
.++|.++|+...+ .++....++...|.-.++++-|+.+|+++.+.|+ -++..|+.+.-+|...+++|.++.-|.+.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 8888888887664 4666777778888999999999999999999984 56788999999999999999999999988
Q ss_pred HHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 539 SDKYGFVPS--KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 539 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
... --.|+ ..+|..|....+..|++.-|.+.|+-... ......++.|.-.-.+.|++++|..+++.+....|.-.
T Consensus 385 lst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred Hhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 765 44455 67888999999999999999999998877 34577999999999999999999999999999999766
Q ss_pred hhHHHHH
Q 005329 615 GTHITLA 621 (702)
Q Consensus 615 ~~~~~l~ 621 (702)
+...+++
T Consensus 464 E~~~Nl~ 470 (478)
T KOG1129|consen 464 EVTTNLQ 470 (478)
T ss_pred cccccee
Confidence 6555443
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.9e-07 Score=86.54 Aligned_cols=400 Identities=14% Similarity=0.074 Sum_probs=254.2
Q ss_pred HHHHHHHHhhhCCChHHHHHHHhccCCCC-cchHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 005329 246 VANSLATMYSKCGKLDYSLRLFERMSTRD-VISWTTIITSYVQMGE-EENAFDAFVRMQESDVKPNEYTFAAIISASANL 323 (702)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 323 (702)
.-...+..|...++.+.|.....+.+..- ..--|.|+.-+-+.|. -.++.--+.+....- + ... ..|.+..+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p---~aL-~~i~~ll~l 173 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-P---MAL-QVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-c---hHH-HHHHHHHHH
Confidence 33455666777788888888888877543 3333334433333332 222222222222210 0 011 111111111
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--cCCHHHHHHHHhcC-----CCCChhhHHHHHHHHHcCCChHHHH
Q 005329 324 ARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSK--CGQLTSTSIVFHGM-----IRRDIISWSTIIGGYSQGGYEEEAF 396 (702)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 396 (702)
+ +..++..-..|-...++|.......-+.++.. .++-..|...+-.+ .+.|+.....+...+...|+.++|.
T Consensus 174 ~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~ 252 (564)
T KOG1174|consen 174 G-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE 252 (564)
T ss_pred h-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH
Confidence 0 11111111122223334433333333333333 34444444333222 3447888899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHH----HHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 005329 397 EYLALMRREGPRPNEFA----FASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYET 472 (702)
Q Consensus 397 ~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 472 (702)
..|++... +.|+..+ |..+ +.+.|+.+....+...+....- .+...|-.-.......++++.|+.+-++.
T Consensus 253 ~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 253 DIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 99998865 4454432 3333 3567788877777666554321 11112222233344567888888888776
Q ss_pred CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 005329 473 ES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK 548 (702)
Q Consensus 473 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 548 (702)
.. .++..+-.-...+...|++++|.-.|+..+. +.| +...|..|+.+|...|++.+|.-+-+...+. +..+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcch
Confidence 53 4556666666788899999999999999886 344 6689999999999999999998887776543 33345
Q ss_pred hhHHHHH-HHHH-hcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005329 549 EHYGCMI-DLLC-RAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 549 ~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
.+...+. ..+. ...--++|.+++++... .|+ ....+.+...|...|.++.++.++++.+...| |...+..|++++
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIM 481 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 5555442 2222 22334889999999887 565 55778888889999999999999999999999 778999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhc
Q 005329 625 AAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRES 688 (702)
Q Consensus 625 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 688 (702)
...+.+.+|.+.|..+.. .+|++.....-+..+++...
T Consensus 482 ~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence 999999999999998765 35788888888888888776
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.2e-11 Score=82.72 Aligned_cols=50 Identities=32% Similarity=0.577 Sum_probs=44.7
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005329 172 RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASAD 221 (702)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 221 (702)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988874
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=6.7e-07 Score=83.18 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhH-HHHHHHH
Q 005329 480 WTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHY-GCMIDLL 558 (702)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~ 558 (702)
..++.+.+.-..++++++..+..+..--..-|...| .+..+.+..|.+.+|.++|-.+... .++ |..+| ..|.++|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHH
Confidence 334444444444555555555444432111122222 2444555555555555555544311 111 22222 2344455
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 559 CRAGRLSDAENMIENMPHQKDDVVW-STLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
.+.|+.+-|++++-++..+.+..+. ..+..-|.+.+.+=-|-..|..+-.++|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 5555555555555544432222222 2223335555555555555555444444
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2.6e-09 Score=104.52 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhc
Q 005329 449 KSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSH 524 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 524 (702)
+..+...|...|+.++|...|++.. ..+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444455556666666666665543 234556666666666666666666666666652 343 3455556666666
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
.|++++|.+.|+...+. .|+..........+...+++++|...|++....-+...|. ........|+...+ +.++
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 66666666666666533 4442211122222334556666666665433211111121 11222223433322 1222
Q ss_pred HHH-------HhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 605 KIL-------ELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 605 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+. ++.|..+..|..++.++.+.|++++|+..|+++.+.
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222 344555566677777777777777777777666654
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4.1e-11 Score=81.37 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005329 273 RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=9.1e-09 Score=110.23 Aligned_cols=245 Identities=10% Similarity=0.030 Sum_probs=170.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHc---------ccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005329 391 YEEEAFEYLALMRREGPRPNEF-AFASVLSVCG---------NMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCG 460 (702)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 460 (702)
..++|...|++..+. .|+.. .+..+..++. ..++.+.|...++.+.+... .+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 345677777777653 34332 3333322221 23457778888887777653 35566677778888899
Q ss_pred CHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 005329 461 SIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFN 536 (702)
Q Consensus 461 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 536 (702)
++++|...|++..+ .+...+..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999988653 35668888899999999999999999999875 4543 233344445666899999999999
Q ss_pred HhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 537 LMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDD-VVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 537 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
++... ..|+ +..+..+..++...|++++|...++++.. .|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88754 2354 55677788899999999999999998766 4443 34555666667777 47888888877754333
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 614 AGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+.....+..+|.-.|+.+.+..+ +++.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 33333377778888888888766 78777653
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=4.2e-09 Score=112.81 Aligned_cols=211 Identities=12% Similarity=0.045 Sum_probs=165.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCC
Q 005329 425 AILEQGKQIHAHVMSIGLERTAMIKSALINMYS---------KCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGY 492 (702)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 492 (702)
++.+.|...+++..+.... +...+..+..+|. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3567888888888876432 3445555555443 23458899999998763 467788889899999999
Q ss_pred hHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 005329 493 SQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSK-EHYGCMIDLLCRAGRLSDAENM 570 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 570 (702)
+++|...|++..+. .|+ ...+..+...+...|++++|...++++.+ +.|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 454 56788888899999999999999999974 46763 3334455567778999999999
Q ss_pred HHhCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 571 IENMPH--QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 571 ~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++++.. +|+ +..+..+..++...|++++|.+.++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 998765 353 4557778888889999999999999998888988888899999999888 4888888877653
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.2e-06 Score=88.22 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=81.6
Q ss_pred chhhhhHHHHHHccCChHHHHHHhhcCCCC-------CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHH
Q 005329 41 TPEVNSQLKHLVKSGYLHDARKMFDTMTQR-------DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSL 113 (702)
Q Consensus 41 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (702)
..-+..+.+.+.|.|-+..|++.|..+..- +.-.-..++ .|.-.-.++.+.+.+..|... +++.|-.+...
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~-NirqNlQi~VQ 683 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSA-NIRQNLQIVVQ 683 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHHH
Confidence 344667888888999999999888776431 111111222 233333677788888888766 56666666665
Q ss_pred HHHHhhccCCchhhhHHHHHHHH-----------hcCCCchhHHHHHHHhhhcCCChhHHHHHhccC
Q 005329 114 ALKACALNVNVNYGESLHGYTVK-----------TGFVNSVFVGSALLDMYTKLGKIELGCRVFDEM 169 (702)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 169 (702)
+...|...-..+...++|+.... -++.-|+.+.-..|.+.++.|++.+.+++.++-
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 55555544444444555554332 134567777778899999999999999987765
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=4.6e-07 Score=93.76 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
.=.++|.+.++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3478899999999999999999999999999999999999887764
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.2e-08 Score=97.11 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=123.8
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005329 376 IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINM 455 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 455 (702)
...+..+...+...|++++|...+++..+.. +.+...+.. +...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~-----------------------------------la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLA-----------------------------------LALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH-----------------------------------HHHH
Confidence 3456666777777777777777777765532 112333333 4444
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 005329 456 YSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLG 531 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A 531 (702)
+...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 444555555555554433 2234455566666677777777777777766532222 234555666677778888888
Q ss_pred HHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 532 FHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 532 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
.+.+++.... .|+ ...+..+...+...|++++|...+++... +++...+..++..+...|+.+.|....+.+..
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888877643 343 55677777788888888888888777655 33455666677777788888888887777766
Q ss_pred hCC
Q 005329 609 LHP 611 (702)
Q Consensus 609 ~~p 611 (702)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 543
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.14 E-value=5e-07 Score=95.07 Aligned_cols=564 Identities=12% Similarity=0.039 Sum_probs=276.0
Q ss_pred chhhhhHHHHHHccCChHHHHHHhhcCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 005329 41 TPEVNSQLKHLVKSGYLHDARKMFDTMTQR---DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKA 117 (702)
Q Consensus 41 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 117 (702)
.+.|..|-..|....+...|.++|++..+- +..++......|++..+++.|..+.-..-+......-...|....-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456777777777777777888888877664 45567777777888888888887743333221111122233333444
Q ss_pred hhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHH---HHHHHhCCChHHHH
Q 005329 118 CALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAI---ITGLVRAGHNKEGL 194 (702)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~ 194 (702)
+-..++...+..-|+...+.. +.|...|..+..+|.++|++..|.++|.+...-++.++..- .-.-+..|.+.+++
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 556667777777777666654 45677888888888888888888888877654333322221 12234567777777
Q ss_pred HHHHHHHHC------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-------hCCCCchhHHHHHHHHhhhCCChH
Q 005329 195 IYFAEMWRS------KEQGDSYTFAIVLKASADSGALNFGREIHTIMLK-------RGFDVVSFVANSLATMYSKCGKLD 261 (702)
Q Consensus 195 ~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~ 261 (702)
..+...... +..--..++..+...+...|-...+..+++.-++ .....+...|-.+ .
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------s 720 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------S 720 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------h
Confidence 777665431 1111222333333333333333333333332222 1111111111111 1
Q ss_pred HHHHHHhccCCCCcch--HHHHHHH-HHhcCCh---h---HHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cC----
Q 005329 262 YSLRLFERMSTRDVIS--WTTIITS-YVQMGEE---E---NAFDAFVRMQESDVKPNEYTFAAIISASAN----LA---- 324 (702)
Q Consensus 262 ~A~~~~~~~~~~~~~~--~~~li~~-~~~~g~~---~---~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~---- 324 (702)
.|..+|-... ||.+. +..++.. .-..+.. + -+.+.+-.-.. ...++.++..+...+.+ .+
T Consensus 721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 2233333333 33211 1111111 1111211 1 11111111111 11223344333333222 11
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 005329 325 RIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGM---IRRDIISWSTIIGGYSQGGYEEEAFEYLAL 401 (702)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (702)
+...|..-+...++.. ..+..+||.|.-. ...|++.-+...|-.- .+.+..+|..+...+.+..+++.|...|..
T Consensus 798 ~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 1223444444444332 2344556655444 4456666666666443 223556777777777778888888888877
Q ss_pred HHHCCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHH--H--HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 005329 402 MRREGPRP-NEFAFASVLSVCGNMAILEQGKQIHAHV--M--SIGLERTAMIKSALINMYSKCGSIKEASQIFYETES-- 474 (702)
Q Consensus 402 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 474 (702)
.+.. .| |...+..........|+.-+...+|..- . ..|-.+....+-+-.......|+.++-+..-+++..
T Consensus 876 ~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 876 VQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 7653 33 3333433333333445555555555442 1 122333333333333444555665555444444331
Q ss_pred -----------CCHHHHHHHHHHHHHcCChHHHHHHHHHchhC-CCCCCHHHHHH----HHHHHhccCcHHHHHHHHHHh
Q 005329 475 -----------DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMV-GLRPDSVTFMG----VLTACSHAGLVDLGFHYFNLM 538 (702)
Q Consensus 475 -----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~----ll~~~~~~g~~~~A~~~~~~~ 538 (702)
.+...|.+.....-+.+.+..|.++..+.+.. ..+-+..+|+. +.+.++..|.++.|..-+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 23456666666666666666666666554310 01233344442 222234445555444333222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 539 SDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH----QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 539 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
.. ..+...-..=+. ..-.|+++++.+.|+++.. ..+ ......++......+..+.|...+-+...+.|.+
T Consensus 1034 ~~----evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~ 1108 (1238)
T KOG1127|consen 1034 WM----EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQ 1108 (1238)
T ss_pred ch----hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccc
Confidence 10 011111111111 1235677777777777655 222 2334445555556677777777777777777666
Q ss_pred chhHHHHHHHHHhc
Q 005329 614 AGTHITLANIYAAK 627 (702)
Q Consensus 614 ~~~~~~l~~~~~~~ 627 (702)
......|+-++.-.
T Consensus 1109 ~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1109 ASSLLPLPAVYILD 1122 (1238)
T ss_pred hhhHHHHHHHHHHh
Confidence 66666665554433
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=2.7e-06 Score=85.87 Aligned_cols=446 Identities=12% Similarity=0.078 Sum_probs=226.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHH
Q 005329 187 AGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRL 266 (702)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 266 (702)
.+++...+++.+.+.+ +.+-...|.....-.+...|+.++|........+.. .-+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455555555555544 122222333333333444556666655555544432 23344555555555555566666666
Q ss_pred HhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCC-C
Q 005329 267 FERMST---RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGL-V 342 (702)
Q Consensus 267 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~ 342 (702)
|..... .|...|.-+.-.-++.++++.....-..+.+.. +-....|..+..+..-.|+...|..+.++..+... .
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 655432 233444444444445555555555555544431 12233444455555556666666666666655432 3
Q ss_pred CchHHHHHH------HHHHHhcCCHHHHHHHHhcCCCC--Chh-hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 005329 343 DSLSVANSI------MAMYSKCGQLTSTSIVFHGMIRR--DII-SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFA 413 (702)
Q Consensus 343 ~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 413 (702)
|+...+... .....+.|.++.|.+.+...... |-. .-..-...+.+.+++++|..++..+.. ..||..-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHH
Confidence 333333221 12234456666666666554332 111 223344556667777777777777766 3566665
Q ss_pred HHHHHHHHc-cc-CcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhh-CCCCCHHHHHHHHHHHHH
Q 005329 414 FASVLSVCG-NM-AILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEA-SQIFYE-TESDDIVSWTAMINGYAE 489 (702)
Q Consensus 414 ~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~-~~~~~~~~~~~li~~~~~ 489 (702)
|.-.+..+. +. +..+....++....+.-........ +--......++.+. -.++.. |.+.-+..+..+.+.|-.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 555444333 22 2222222444443332111000000 00000011112111 112221 112112223333333222
Q ss_pred cCChHH----HHHHHHHchhCC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHH
Q 005329 490 HGYSQE----AIHLFEKVPMVG----------LRPDSV--TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYG 552 (702)
Q Consensus 490 ~g~~~~----A~~~~~~m~~~g----------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 552 (702)
....+- +.++...+...| =+|... ++..++..+-..|+++.|..+++... +-.|+ ++.|.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~ 409 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYL 409 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHH
Confidence 111110 111111111111 144443 45556777888999999999999887 55787 77777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------c-hhHHH--HH
Q 005329 553 CMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC------A-GTHIT--LA 621 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~-~~~~~--l~ 621 (702)
.=.+.+...|.+++|..++++... .||...-.--+.-..+.++.++|.++..+--..+-+- . -.|.. =+
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 778889999999999999999877 4555444455566678889999988887765544211 0 12332 36
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 005329 622 NIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+|.++|++-+|++=+..+.+
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 778899999888776655543
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=1.9e-05 Score=80.63 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=136.2
Q ss_pred HHHHHccCChHHHHHHhhcCCCCCcc--hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCch
Q 005329 48 LKHLVKSGYLHDARKMFDTMTQRDEI--SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVN 125 (702)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 125 (702)
+.+-.....|.+|+.+++.+...+.. .|..+..-|+..|+++.|.++|-+. + .++-.+..|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccHH
Confidence 34445666778888888877655433 4677777888888888888888765 2 3445667788888888
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005329 126 YGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKE 205 (702)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 205 (702)
.|.++-++. .|.......|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++.++-..
T Consensus 809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 887776554 45455566666666677788899999998888888774 47788888888888888776421
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhc
Q 005329 206 QGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFER 269 (702)
Q Consensus 206 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (702)
..-..|...+..-+-..|++..|+.-|-+.. -|.+-+++|-..+.+++|.++-+.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 1123466667777888888888887664432 245667777777888887777654
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=7.4e-08 Score=98.19 Aligned_cols=200 Identities=12% Similarity=0.125 Sum_probs=118.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005329 381 TIIGGYSQGGYEEEAFEYLALMRR-----EG-PRPN-EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALI 453 (702)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 453 (702)
.+...|...+++++|..+|+++.. .| ..|. ..++..|-.+|.+.|++++|...++.+.+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 345556666666666666666643 11 1121 124445555666777777776665554331
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCH-HHHHHHHHHHHHcCChHHHHHHHHHchh---CCCCCCH----HHHHHHHHHH
Q 005329 454 NMYSKCGSIKEASQIFYETE---SDDI-VSWTAMINGYAEHGYSQEAIHLFEKVPM---VGLRPDS----VTFMGVLTAC 522 (702)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~~~~~ll~~~ 522 (702)
++... .+.+ ..++.++..+...+++++|..++++..+ .-+.++. .+++.|...|
T Consensus 313 ---------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 313 ---------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ---------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 11100 1111 1233444555556666666655554332 1122222 3677777888
Q ss_pred hccCcHHHHHHHHHHhHHhh----C-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHH
Q 005329 523 SHAGLVDLGFHYFNLMSDKY----G-FVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--------QKD-DVVWSTLL 587 (702)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p~-~~~~~~l~ 587 (702)
...|++++|.++|++++... + ..+. ...++.|...|.+.+++.+|..+|.+... .|+ ..+|..|+
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 88888888888887776542 1 1222 44566777788888888888877776543 233 45888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005329 588 RACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~~~~ 608 (702)
..|...|+++.|+++.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999888874
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1e-05 Score=83.66 Aligned_cols=232 Identities=14% Similarity=0.059 Sum_probs=131.4
Q ss_pred HHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCC--------CCCHHHHHHHHHHhh
Q 005329 48 LKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQM--------NMDPFILSLALKACA 119 (702)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~ll~~~~ 119 (702)
.+.|+-.|+.+.|.+...-+.. -..|..|.+.|.+..+.+-|.--+-.|....|. .|+ .+-..+.-...
T Consensus 735 FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 4456777888888777665543 357888888888888777776655555322111 111 11122222334
Q ss_pred ccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCC-CcchHHHHHHHHHhCCChHHHHHHHH
Q 005329 120 LNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLR-NVVSWTAIITGLVRAGHNKEGLIYFA 198 (702)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 198 (702)
..|.+++|+.++.+-.+.. .|=..|...|.+++|.++-+.-.+- =..||.--...+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 5678888888888766543 3445677788899988887653321 11245555555666678888888877
Q ss_pred HHH----------HCC---------CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCC
Q 005329 199 EMW----------RSK---------EQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGK 259 (702)
Q Consensus 199 ~m~----------~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 259 (702)
+.. ... -..|...|.=-...+-..|+.+.|..+|....+ |-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 631 110 001111111111222234555555555544432 2345555555666
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005329 260 LDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (702)
.++|-++-++- .|..+.-.|.+.|-..|++.+|..+|.+.+
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666665543 244555556666666777777776666543
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=9.4e-08 Score=93.57 Aligned_cols=232 Identities=8% Similarity=-0.030 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005329 390 GYEEEAFEYLALMRREG-PRPN--EFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEAS 466 (702)
Q Consensus 390 g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 466 (702)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+....+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666666655432 1222 23344455566667777777777777766542 34667777888888899999999
Q ss_pred HHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 005329 467 QIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYG 543 (702)
Q Consensus 467 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 543 (702)
..|++..+ .+..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.|......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 88887753 35678888889999999999999999998874 454432222222345677899999999776533
Q ss_pred CCCChhhHHHHHHHHHhcCCHHH--HHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCc
Q 005329 544 FVPSKEHYGCMIDLLCRAGRLSD--AENMIENMPH------QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP-SCA 614 (702)
Q Consensus 544 ~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 614 (702)
..|+...+ .++.. ..|+..+ +.+.+.+... +....+|..++..+...|++++|+..|+++++.+| +..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 23333 3454433 3333333222 12346899999999999999999999999999996 555
Q ss_pred hhHHHHHHHHHhcCC
Q 005329 615 GTHITLANIYAAKGR 629 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~ 629 (702)
+....++......++
T Consensus 272 e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 272 EHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555556655544433
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=3.9e-06 Score=84.70 Aligned_cols=415 Identities=11% Similarity=0.054 Sum_probs=263.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 005329 221 DSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST---RDVISWTTIITSYVQMGEEENAFDA 297 (702)
Q Consensus 221 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 297 (702)
..+++....+..+.+++. .+....+.....-.+...|+-++|....+.-.. .+.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 456777788888888773 344445555555566778999999888876654 3667899988888888999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 005329 298 FVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR---- 373 (702)
Q Consensus 298 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---- 373 (702)
|......+ +-|...+.-+--.-++.++++..........+.. +.....|..+..++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988764 3455556555555566777777766666665542 33445677777888888888888888776522
Q ss_pred -CChhhHHHH------HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHcccCcHHHHHHHHHHHHHhCCCCC
Q 005329 374 -RDIISWSTI------IGGYSQGGYEEEAFEYLALMRREGPRPNEFAF-ASVLSVCGNMAILEQGKQIHAHVMSIGLERT 445 (702)
Q Consensus 374 -~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (702)
++...+... .....+.|..++|++.+..-... ..|...+ .+-...+.+.+++++|..++..++..+ ||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 233333222 23455678888888777655332 2222222 223345667788999999888888764 33
Q ss_pred hh-HHHHHHHHHHhcCCHHHHH-HHHhhCCCC--C-HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 005329 446 AM-IKSALINMYSKCGSIKEAS-QIFYETESD--D-IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT 520 (702)
Q Consensus 446 ~~-~~~~li~~~~~~g~~~~A~-~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 520 (702)
.. .|-.+..++++-.+.-++. .+|....+. - ...-..=++......-.+..-.++..+.+.|+++--..+.++-.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 33 3444445554333333333 566554421 0 00000001111112223334456677777787664444433322
Q ss_pred HHhccCcHH----HHHHHHHHhHHhh--------C-CCCChh--hHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH-HHH
Q 005329 521 ACSHAGLVD----LGFHYFNLMSDKY--------G-FVPSKE--HYGCMIDLLCRAGRLSDAENMIENMPH-QKDD-VVW 583 (702)
Q Consensus 521 ~~~~~g~~~----~A~~~~~~~~~~~--------~-~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~-~~~ 583 (702)
.-...+ .+..+...+.... . -+|... ++..++..+-+.|+++.|..+++.+.. .|+. ..|
T Consensus 332 ---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 332 ---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred ---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 211111 1222222221110 0 134433 344677889999999999999999988 5653 466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
..-.+.+...|+.++|...++++.+++-.|...-..-+.-..+.++.++|.++..+....|.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 66778889999999999999999999977888887888888999999999999988877764
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-07 Score=90.84 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=49.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhhCCChH
Q 005329 183 GLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVV-SFVANSLATMYSKCGKLD 261 (702)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 261 (702)
+.+..|+++.|+..|.+.+... ++|..-|..=..+++..|++++|.+=-.+-++. .|+ ..-|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 3445667777777776665543 235556666666666666666665544444443 233 344555555555566666
Q ss_pred HHHHHHhccC
Q 005329 262 YSLRLFERMS 271 (702)
Q Consensus 262 ~A~~~~~~~~ 271 (702)
+|...|.+-.
T Consensus 88 eA~~ay~~GL 97 (539)
T KOG0548|consen 88 EAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.99 E-value=4e-06 Score=88.59 Aligned_cols=563 Identities=12% Similarity=0.034 Sum_probs=315.5
Q ss_pred hHHHHHHhhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHH
Q 005329 57 LHDARKMFDTMTQRDEI---SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGY 133 (702)
Q Consensus 57 ~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 133 (702)
...|...|-+..+.|+. .|..|...|..--+...|..-|++..+-. ..+......+...+++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666555554433 57777777776667778888888887543 45566777888888888888888887322
Q ss_pred HHHhc-CCCchhHHHHHHHhhhcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005329 134 TVKTG-FVNSVFVGSALLDMYTKLGKIELGCRVFDEMP---LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDS 209 (702)
Q Consensus 134 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 209 (702)
..+.. ...-...|..+--.|.+.++...|+.-|+... +.|...|..|..+|.+.|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 22211 01111223333345667788888888887655 34667888888999999999999999988755 34443
Q ss_pred hhHHHHHHH--HhccCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhhCCChHHHHHHHhccCC---------
Q 005329 210 YTFAIVLKA--SADSGALNFGREIHTIMLKRG------FDVVSFVANSLATMYSKCGKLDYSLRLFERMST--------- 272 (702)
Q Consensus 210 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 272 (702)
+|.....+ -+..|.+.++...+......- ...-..++-.+...+.-.|-...|..+|+...+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33333332 356788888888887776531 001111222222222222323333333332211
Q ss_pred --CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCch---H---HHHHHHHHHHHhCCCCc
Q 005329 273 --RDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARI---Q---WGEQLHAHVLRLGLVDS 344 (702)
Q Consensus 273 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~ 344 (702)
.+...|-.+- .|..+|-... .. .|+......+..-.-..+.. + .+.+.+-.-. .+..+
T Consensus 709 ~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIH 774 (1238)
T ss_pred hhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhc
Confidence 1112222211 2223333322 11 22222222222212222222 1 1111111111 11222
Q ss_pred hHHHHHHHHHHHh----cC----CHHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 005329 345 LSVANSIMAMYSK----CG----QLTSTSIVFHGMIR---RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFA 413 (702)
Q Consensus 345 ~~~~~~l~~~~~~----~g----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 413 (702)
...|..++..|.+ .| +...|+..+...++ .+...||.|.-. ...|.+.-+...|-+-.... +....+
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 3333334333333 22 23467777776643 366678776655 66688888888776665542 335557
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-----CCC---CCHHHHHHHHH
Q 005329 414 FASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYE-----TES---DDIVSWTAMIN 485 (702)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~---~~~~~~~~li~ 485 (702)
|..+--.+....+++.|...|.......+. +..-+--........|+.-++..+|.- +.+ ++..-|-+-..
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 777777788889999999999888765422 222222222223346777777777764 111 34444544444
Q ss_pred HHHHcCChHHHHHHHHHchhC---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHH----
Q 005329 486 GYAEHGYSQEAIHLFEKVPMV---------GLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYG---- 552 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---- 552 (702)
....+|+.++-+...+++-.. |.+.+...|........+.+.+..|.+...+...-...+.+...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 556666666555444443321 2333446777777777777877777777666543323344555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHhcCC
Q 005329 553 CMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG---THITLANIYAAKGR 629 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 629 (702)
.+.+.++..|.++.|..-+......-+..+..+-+.. .-.|+++++.+.|++++.+...+.. ....+++....++.
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 3456677889999887776655443333333333322 4578999999999999988644433 44556667777888
Q ss_pred hHHHHHHHHHHHh
Q 005329 630 WREAAEVRKMMRS 642 (702)
Q Consensus 630 ~~~A~~~~~~~~~ 642 (702)
.+.|...+-+...
T Consensus 1091 k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKS 1103 (1238)
T ss_pred chHHHHHHHHHHH
Confidence 8888887666654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=4.6e-08 Score=94.11 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=110.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc----cCcH
Q 005329 453 INMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH----AGLV 528 (702)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 528 (702)
...+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 34556678888888777665 45666677788888899999999999888863 3443 33334444322 2368
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 005329 529 DLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDV-NCGRHTAEK 605 (702)
Q Consensus 529 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 605 (702)
.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++++... +.++.++..++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8899999988654 456778888888888889999999988888766 34566777777777777776 677788888
Q ss_pred HHHhCCCCch
Q 005329 606 ILELHPSCAG 615 (702)
Q Consensus 606 ~~~~~p~~~~ 615 (702)
+...+|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 8888887654
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3e-05 Score=77.69 Aligned_cols=118 Identities=13% Similarity=0.058 Sum_probs=61.8
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHH--HHhhh--
Q 005329 79 ISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSAL--LDMYT-- 154 (702)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~-- 154 (702)
+..+...|++++|...-.++.... +.+...+..-+-+..+.+.+++|..+.+. .+ -..+++.. =.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 344556667777777777776431 44444555555556666666666533222 11 11111111 23333
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005329 155 KLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSK 204 (702)
Q Consensus 155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 204 (702)
+.+..++|...++...+.+..+-..=...+.+.|++++|+++|+.+.+++
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 55666666666664443343344444555666666666666666665543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.9e-07 Score=88.17 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=116.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHH
Q 005329 452 LINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDL 530 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 530 (702)
+..+|.+.++.+.|...|++...+... -....+....+++....+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 444666778888888888775421110 1112233345555555544332 234331 22233666788999999
Q ss_pred HHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005329 531 GFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRACMVQGDVNCGRHTAEKIL 607 (702)
Q Consensus 531 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 607 (702)
|+..|.+++.+ .|+ ...|..-.-+|.+.|.+..|+.-.+...+ . +....|..-+.++....+++.|.+.|++.+
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865 465 88899999999999999999988777766 3 445577777777778889999999999999
Q ss_pred HhCCCCchhHHHHHHHHHhc
Q 005329 608 ELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 608 ~~~p~~~~~~~~l~~~~~~~ 627 (702)
+.+|++......+..+...+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999988888888877764
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=3.2e-08 Score=95.20 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=132.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHH
Q 005329 443 ERTAMIKSALINMYSKCGSIKEASQIFYETE-SD----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMG 517 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (702)
.|.......+...+...++-+.+..-+++.. ++ +..........+...|++++|++++.+. .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3444444444443433345555555554433 22 2222223334566679999999888653 34566677
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEH---YGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMV 592 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~ 592 (702)
.+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.+.+|.-+|+++.. .+++.+.+.++.++..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 8889999999999999999996 34555222 22333333334479999999999877 4678888999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 005329 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRW-REAAEVRKMMRSK 643 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 643 (702)
.|++++|+++++++++.+|.++.+..+++-+....|+. +.+.+++..+...
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 6677888888764
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1e-05 Score=83.67 Aligned_cols=266 Identities=11% Similarity=0.048 Sum_probs=149.9
Q ss_pred HhhcCCCCCcchHHHHHH--HHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhc--
Q 005329 63 MFDTMTQRDEISWTTLIS--GYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTG-- 138 (702)
Q Consensus 63 ~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 138 (702)
-|-....-|..|-..++. .|..-|+.+.|.+-.+-+. +...|..+.+.|.+.++++-|+-.+..|....
T Consensus 717 dFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 717 DFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 333334447777777775 3778899999988877665 33689999999999999888888777765321
Q ss_pred ------CCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005329 139 ------FVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTF 212 (702)
Q Consensus 139 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 212 (702)
.+.+..+-....-.....|.+++|..++.+-.+ |..|=..|-..|.+++|.++-+.--+ +. =..||
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Ty 861 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTY 861 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhH
Confidence 111111111122223455777777777765442 44555666667777777777665322 11 12344
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChh
Q 005329 213 AIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEE 292 (702)
Q Consensus 213 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (702)
..-...+-..++.+.|.+.|++.-. +--.++..|. .++.......+.+.++.. |.=....+-..|+.+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~d~~L--~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKRDESL--YSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhccchHH--HHHHHHHHhcccchH
Confidence 4445555566777777777764321 1111111111 123334444454444432 222333344567777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhc
Q 005329 293 NAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHG 370 (702)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (702)
.|+.+|...+. |-++++..|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|.+
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777766554 344555556667777666665432 1233333456666666666666666654
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=1.6e-07 Score=82.45 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=152.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccC
Q 005329 451 ALINMYSKCGSIKEASQIFYETESD---DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAG 526 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 526 (702)
.|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+. .| +....|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 3666788888888888888887743 4467888888899999999999999988874 45 4467788888888889
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 527 LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
.+++|.+.|+.+.......--..+|..++-+..+.|+.+.|...|++... .| .+.+...+.......|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999998876532222377888888888899999999999988877 33 46677888888889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 605 KILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 605 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+...-.+.+...+...+.+-.+.|+-+.|-++=..+..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 98888887888888888888889998888777666554
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.94 E-value=1.1e-06 Score=91.10 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=95.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH
Q 005329 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRAC 590 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~ 590 (702)
++..+...|...|++++|++++++.++. .|+ ++.|..-++.|-+.|++++|.+.++.+.. . .|...-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 4455666778899999999999988854 787 88888889999999999999999988877 3 3455555566677
Q ss_pred HhcCCHHHHHHHHHHHHHhC--CCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 591 MVQGDVNCGRHTAEKILELH--PSC-------AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+.|+.++|+.++..-...+ |.. .....-.+.+|.+.|++..|++.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 79999999999888765544 211 12233468889999999999888776654
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.1e-08 Score=98.29 Aligned_cols=195 Identities=12% Similarity=0.063 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCC--------CCHHHH
Q 005329 447 MIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR--------PDSVTF 515 (702)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~~~ 515 (702)
..|..|.......++-..|+..+++.. ..|......|...|...|.-..|+..++.-+....+ ++...-
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 334444444445555555555555544 245666777777888888888888888776543210 000000
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 005329 516 MGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQ 593 (702)
Q Consensus 516 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~ 593 (702)
.. ..+..........++|-.+....+..+|+.++..|.-.|.-.|++++|.+.|+.+.. +| |...||.|+..+...
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 00 122333445566777777766656668889999999999999999999999999887 55 567999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+.++|+..|++++++.|....+.++|+-.|...|.|+||.+.|=.+...
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998777654
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=3.5e-06 Score=78.22 Aligned_cols=287 Identities=13% Similarity=0.111 Sum_probs=162.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHH---HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHcccCc
Q 005329 351 IMAMYSKCGQLTSTSIVFHGMIRRDIISWSTI---IGGYSQGGYEEEAFEYLALMRREGPRPNEFAFAS-VLSVCGNMAI 426 (702)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 426 (702)
+...+...|++.+|+.-|...++-|+..|.++ ...|...|+...|+.-+....+ .+||...-.. -...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 44445555666666666665555555444443 2345555555555555555554 3555432111 1123445566
Q ss_pred HHHHHHHHHHHHHhCCCCC--hh------------HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHH
Q 005329 427 LEQGKQIHAHVMSIGLERT--AM------------IKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAE 489 (702)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 489 (702)
++.|..=|+.+.++..... .. .....+..+...|+...|+.....+.+ -|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 6666666665555432111 00 011122233445666666666665542 366666666777777
Q ss_pred cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-hH---HHH---H------H
Q 005329 490 HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKE-HY---GCM---I------D 556 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~---~~l---~------~ 556 (702)
.|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++.. .+.||.. +| -.| + .
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 777777776665555432 2233344445555566677777766666665 4566632 22 111 1 1
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCCh
Q 005329 557 LLCRAGRLSDAENMIENMPH-QKDD-----VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRW 630 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~-~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 630 (702)
.....++|.++++-.+...+ .|.. ..+..+-..+...|++.+|++...++++.+|+|..++..-+.+|.-..+|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 23345666666666665544 4441 12233444455667888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhC
Q 005329 631 REAAEVRKMMRSK 643 (702)
Q Consensus 631 ~~A~~~~~~~~~~ 643 (702)
++|+.-|+++.+.
T Consensus 358 D~AI~dye~A~e~ 370 (504)
T KOG0624|consen 358 DDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888877654
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=0.00023 Score=82.53 Aligned_cols=362 Identities=12% Similarity=0.007 Sum_probs=162.7
Q ss_pred HHHhhhCCChHHHHHHHhccCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHH
Q 005329 251 ATMYSKCGKLDYSLRLFERMSTRDVIS--WTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQW 328 (702)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 328 (702)
...+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344555666666666555554332111 111122344556666666666555221111122222233334455677777
Q ss_pred HHHHHHHHHHhCCC------Cc--hHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hhHHHHHHHHHcCCCh
Q 005329 329 GEQLHAHVLRLGLV------DS--LSVANSIMAMYSKCGQLTSTSIVFHGMIR----RDI----ISWSTIIGGYSQGGYE 392 (702)
Q Consensus 329 a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~g~~ 392 (702)
+...+......--. +. ......+...+...|++++|...+++... .+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 77777665442110 01 11112222334445555555555544321 111 1223344444455555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005329 393 EEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLE-RTAMIKSALINMYSKCGSIKEASQIFYE 471 (702)
Q Consensus 393 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 471 (702)
++|...+.+....... .+.. ........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~~~~~-------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQMARQ-------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHHHHhh-------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554321000 0000 0011222233344444555555444433
Q ss_pred CCC-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHchhC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHH
Q 005329 472 TES-------D----DIVSWTAMINGYAEHGYSQEAIHLFEKVPMV--GLRPD--SVTFMGVLTACSHAGLVDLGFHYFN 536 (702)
Q Consensus 472 ~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~ 536 (702)
... + ....+..+...+...|++++|...+++.... ...+. ...+..+.......|+.+.|.+.+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 221 0 1112333344455556666666666554431 11111 1233334445556666776666666
Q ss_pred HhHHhhCCCCChhhH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 005329 537 LMSDKYGFVPSKEHY-----GCMIDLLCRAGRLSDAENMIENMPHQ--KDD----VVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 537 ~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
.+............+ ......+...|+.+.|..++...... ... ..+..+..++...|++++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 653321111000000 01123334466677777766555431 111 1123455556667777777777777
Q ss_pred HHHhC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 606 ILELH------PSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 606 ~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+++.. +.....+..++.++.+.|+.++|...+.++.+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76642 112235556667777777777777777766653
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=6e-06 Score=75.21 Aligned_cols=394 Identities=10% Similarity=0.027 Sum_probs=196.6
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC--CCcchHHHH-
Q 005329 205 EQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST--RDVISWTTI- 281 (702)
Q Consensus 205 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l- 281 (702)
+..-..-+...+..+.+..+++.|.+++....+.. +.+....+.|...|-...++..|-..++++.. |...-|...
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 33333445556666666666666666666555543 22444455555666666666666666666543 222222221
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 005329 282 ITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQL 361 (702)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (702)
..++-+.+.+..|+++...|... |+...-..-+.+.. .-..+++
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl 128 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDL 128 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccC
Confidence 23444556666666666555432 11111111111110 1123444
Q ss_pred HHHHHHHhcCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHh
Q 005329 362 TSTSIVFHGMIR-RDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSI 440 (702)
Q Consensus 362 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (702)
..+..+.++.+. .+..+.+.......+.|+++.|.+-|+...+-+---....|+..+ +..+.++.+.|.+...++++.
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 444444444442 233333333333344455555555554444422111223333322 222334445555544444443
Q ss_pred CCCCC----------------------------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHHHHHHHHHHH
Q 005329 441 GLERT----------------------------AMIKSALINMYSKCGSIKEASQIFYETES-----DDIVSWTAMINGY 487 (702)
Q Consensus 441 ~~~~~----------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~ 487 (702)
|+... ...+|.-...+.+.|+++.|.+.+-+|+. -|+++...+.-.=
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 32110 11222233345678999999999999985 3677766554322
Q ss_pred HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH-hcCCHHH
Q 005329 488 AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLC-RAGRLSD 566 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 566 (702)
..+++.+..+-+.-+.+.. +-...||..++-.||+..-++.|-.++.+-....=.-.+...|+ |++++. ..-..++
T Consensus 288 -~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 288 -MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEE 364 (459)
T ss_pred -ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHH
Confidence 2345555555555555432 23457999999999999999988887764321100001223333 333333 3345666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-HhcCC----HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 567 AENMIENMPHQKDDVVWSTLLRAC-MVQGD----VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 567 A~~~~~~~~~~p~~~~~~~l~~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
|.+-++.+...-........+..- .++.+ ...+++-|++.+++. -......+++|.+..++.-+.+.|..-.
T Consensus 365 a~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 365 AFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 766655543311111111111111 12222 233445556666654 1266678899999999999999998765
Q ss_pred h
Q 005329 642 S 642 (702)
Q Consensus 642 ~ 642 (702)
+
T Consensus 442 e 442 (459)
T KOG4340|consen 442 E 442 (459)
T ss_pred h
Confidence 5
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=3.1e-07 Score=87.31 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CH---HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH----H
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETES--D-DI---VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV----T 514 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 514 (702)
....+-.+...+...|++++|...|+++.. | +. ..+..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344445555666666667666666665542 2 11 34555666666666666666666666653 22211 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005329 515 FMGVLTACSHA--------GLVDLGFHYFNLMSDKYGFVPSK-EHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWST 585 (702)
Q Consensus 515 ~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 585 (702)
+..+..++... |+.+.|.+.|+.+... .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33333344332 5566666666666543 3432 12211111100 00000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 586 LLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+...+...|++++|+..++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999997765 4789999999999999999999999887654
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=9.5e-06 Score=82.73 Aligned_cols=257 Identities=12% Similarity=0.005 Sum_probs=152.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHH---HHHHHcccCcHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 005329 384 GGYSQGGYEEEAFEYLALMRREGPRPNEF-AFAS---VLSVCGNMAILEQGKQIHAHVMSIGLER-TAMIKSALINMYSK 458 (702)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 458 (702)
..+...|++++|.+.+++..+. .|+.. .+.. ........+..+.+.+.+.. .....| .......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 3455677888888888777664 23322 2221 11111223444444444433 111222 23344455667788
Q ss_pred cCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCC-CCCH--HHHHHHHHHHhccCcHHHHH
Q 005329 459 CGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGL-RPDS--VTFMGVLTACSHAGLVDLGF 532 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~A~ 532 (702)
.|++++|...+++..+ .+...+..+..++...|++++|...+++.....- .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888887653 3566777888888889999999999888775421 1232 23556777788889999999
Q ss_pred HHHHHhHHhhCCCCChhhH-H--HHHHHHHhcCCHHHHHHH---HHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHH
Q 005329 533 HYFNLMSDKYGFVPSKEHY-G--CMIDLLCRAGRLSDAENM---IENMPHQ-K---DDVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 533 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-p---~~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
.+++.+.......+..... + .+...+...|..+.+.++ ....... | ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875321111111111 1 223333444433322222 1111111 1 112223456667788999999999
Q ss_pred HHHHHHhCCC---------CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 603 AEKILELHPS---------CAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 603 ~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++.+....-. ........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888764311 34556678888999999999999999887643
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=4.2e-07 Score=82.57 Aligned_cols=147 Identities=11% Similarity=0.097 Sum_probs=113.7
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAG 562 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 562 (702)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 3457778887776544433221 11 0122356677777777777644 554 888999999999999
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005329 563 RLSDAENMIENMPH--QKDDVVWSTLLRAC-MVQGD--VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 563 ~~~~A~~~~~~~~~--~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (702)
++++|...|++... +.+...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+.+.|++++|+..|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999877 44677888888864 67777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 005329 638 KMMRSKGV 645 (702)
Q Consensus 638 ~~~~~~~~ 645 (702)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987543
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=8.3e-08 Score=82.38 Aligned_cols=93 Identities=12% Similarity=-0.116 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+..+...+...|++++|...|+.+.. +.+...|..++.++...|++++|...|+++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 44566677777777777777777665 3456677777777778888888888888888888878888888888888888
Q ss_pred ChHHHHHHHHHHHhC
Q 005329 629 RWREAAEVRKMMRSK 643 (702)
Q Consensus 629 ~~~~A~~~~~~~~~~ 643 (702)
++++|+..+++..+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888877777664
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=2.1e-07 Score=79.91 Aligned_cols=122 Identities=9% Similarity=-0.025 Sum_probs=101.9
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 498 HLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 498 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.++++..+ +.|+. +..+...+...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|...|+++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 34553 44567778899999999999999874 4665 88889999999999999999999999887
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 005329 577 --QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAA 626 (702)
Q Consensus 577 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 626 (702)
+.+...+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999888876544
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=4e-05 Score=71.42 Aligned_cols=311 Identities=14% Similarity=0.095 Sum_probs=158.0
Q ss_pred HHHHHhhhCCChHHHHHHHhccCCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccC
Q 005329 249 SLATMYSKCGKLDYSLRLFERMSTRDVISWTTII---TSYVQMGEEENAFDAFVRMQESDVKPNEYTFA-AIISASANLA 324 (702)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 324 (702)
-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.=+.+..+. +||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3455566677888888888777777777777765 3677788888888777777664 55532211 1112344556
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005329 325 RIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRR 404 (702)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (702)
.++.|+.=|+.+++....... ...++.+.--.++- ......+..+...|+...|+.....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 666666666665554321100 00001000000000 0111223333444555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHH
Q 005329 405 EGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMI 484 (702)
Q Consensus 405 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 484 (702)
- ...|...+..-..+|...|++..|+.=+..+-+.. ..+.....-+-
T Consensus 184 i-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------------------------------~DnTe~~ykis 230 (504)
T KOG0624|consen 184 I-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------------------------------QDNTEGHYKIS 230 (504)
T ss_pred c-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------------------------------ccchHHHHHHH
Confidence 2 12233333333333333343333333332222222 23333333334
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHhHHhhCCCCC----
Q 005329 485 NGYAEHGYSQEAIHLFEKVPMVGLRPDSVT----FMGV---------LTACSHAGLVDLGFHYFNLMSDKYGFVPS---- 547 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 547 (702)
..+...|+.+.++...++..+ +.||... |..+ +......+.|.++.+..+...+. .|.
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~i 305 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMI 305 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccce
Confidence 444444444444444444433 2344321 1000 11123445566666666655533 444
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchh
Q 005329 548 -KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 548 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
...+..+-.++...|++-+|++...+... .|+ ..++..-..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 22334455666677777888777777666 443 6677777777777778888888888888887766543
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.4e-06 Score=93.85 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=120.4
Q ss_pred HHHHHHHHHcccCcHHHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHHHHHHHHHHHH
Q 005329 413 AFASVLSVCGNMAILEQG-KQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE---SDDIVSWTAMINGYA 488 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 488 (702)
....+=.+.+..|..+++ .++++++.+ ++....+.....+++.-..... ..++..+..|.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALE 97 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333333455666666655 445555543 3333333333222222222111 134667777777778
Q ss_pred HcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHH
Q 005329 489 EHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 566 (702)
+.|++++|..+++...+ +.|+. .....+...+.+.+++++|...+++... ..|+ ......+..++.+.|++++
T Consensus 98 ~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHH
Confidence 88888888888887776 45655 4566677777788888888888777764 3565 5666677777788888888
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005329 567 AENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 567 A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
|..+|+++.. .| +..++..+..++...|+.++|...|+++++...+....|.
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888887775 33 3567777777778888888888888888777644444443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=3.2e-06 Score=76.24 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 005329 516 MGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQ 593 (702)
Q Consensus 516 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~ 593 (702)
..+-..+...|+-+....+....... -.-+......++....+.|++.+|+..+++... ++|...|+.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33444444455555444444443211 111233444455555566666666666655554 44555666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
|+++.|...|.+++++.|+++.++.+|+..|.-.|+++.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666555544
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=0.00012 Score=74.76 Aligned_cols=196 Identities=10% Similarity=-0.024 Sum_probs=107.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHH-HHHHhhccCCchhhhHHHHHHHHhcCCCchhHHH---HH
Q 005329 74 SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSL-ALKACALNVNVNYGESLHGYTVKTGFVNSVFVGS---AL 149 (702)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 149 (702)
.|..+...+...|+++++...+.+..+.....++...... ....+...|+++.|...++..++.. +.+...+. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444455555566666665555555433222223222211 1233445667777777777766654 22333333 11
Q ss_pred HHhhhcCCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChH
Q 005329 150 LDMYTKLGKIELGCRVFDEMPLRNV---VSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALN 226 (702)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 226 (702)
.......+..+.+.+.++.....+. .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 1222234555556665554322222 223334456677788888888888877653 334455666667777778888
Q ss_pred HHHHHHHHHHHhCC-CCch--hHHHHHHHHhhhCCChHHHHHHHhccC
Q 005329 227 FGREIHTIMLKRGF-DVVS--FVANSLATMYSKCGKLDYSLRLFERMS 271 (702)
Q Consensus 227 ~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 271 (702)
+|...++...+... .++. ..|..+...+...|++++|..++++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888777776432 1222 233456677777777777777777754
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=4.4e-06 Score=91.29 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=178.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHH
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETESD--------DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFM 516 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 516 (702)
+...|-..|......++.++|.+++++..+. -...|.++++.-...|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4445566677777888888888888876531 2357888888888888888889999998863 23345788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHh
Q 005329 517 GVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK---DDVVWSTLLRACMV 592 (702)
Q Consensus 517 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p---~~~~~~~l~~~~~~ 592 (702)
.|...|.+.+++++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++.. -| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999876 5678899999999999999999999998877 23 45566677777889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCC
Q 005329 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQ 672 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 672 (702)
.|+.+++..+|+-.+...|.....|..+++.-.+.|+.+.++.+|+++...++.+- +
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k-----------------------k 1669 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK-----------------------K 1669 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh-----------------------H
Confidence 99999999999999999999999999999999999999999999999998776431 3
Q ss_pred hhHHHHHHHHHHHHhcCCCCC
Q 005329 673 GEDIYRMLDLLASRESDIDDL 693 (702)
Q Consensus 673 ~~~~~~~l~~l~~~~~~~~~~ 693 (702)
....|.+|-..++..|+..+.
T Consensus 1670 mKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhH
Confidence 445566777766666665443
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.9e-06 Score=74.83 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=158.0
Q ss_pred CCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhhHHH-
Q 005329 305 DVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR--RDIISWST- 381 (702)
Q Consensus 305 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~- 381 (702)
|+....--+.+++..+.+..+++.+++++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444445666666666667777776666555443 22445556666666666666666666666532 22222211
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005329 382 IIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGS 461 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 461 (702)
-...+-+.+.+.+|+.+...|... |+...-..-+.+. .....++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~D 127 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGD 127 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------Hhccccc
Confidence 133444556666666666655431 2111111101100 1112345
Q ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005329 462 IKEASQIFYETE-SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSD 540 (702)
Q Consensus 462 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 540 (702)
+..+..+.++.+ +.+..+.+.......+.|+++.|.+-|+...+-|--.....|+..+ +..+.|+++.|..+..++++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE 206 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH
Confidence 555555555555 2444444444455556666666666666555432222223444332 33445566666666666555
Q ss_pred hhCCCC-------------Ch--------hhHHHHH-------HHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHH
Q 005329 541 KYGFVP-------------SK--------EHYGCMI-------DLLCRAGRLSDAENMIENMPH----QKDDVVWSTLLR 588 (702)
Q Consensus 541 ~~~~~p-------------~~--------~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~ 588 (702)
+ |++. |+ ..-+.++ ..+.+.|+++.|.+.+.+|.- .-|+.|...+.-
T Consensus 207 R-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 207 R-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred h-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 4 3321 10 1112222 234577888888888888764 346666655433
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005329 589 ACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRK 638 (702)
Q Consensus 589 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (702)
. -..+++....+-++-+++++|--++++.++..+|++..-++-|..++-
T Consensus 286 ~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 286 M-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred h-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 2 234556666777777788888777888888888888888877776654
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2e-06 Score=88.07 Aligned_cols=184 Identities=9% Similarity=-0.015 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc
Q 005329 450 SALINMYSKCGSIKEASQIFYETE--SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL 527 (702)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 527 (702)
...|.+|...|+..+|..+..+-. +|++..|..+.+......-+++|+++.+..... .-..+.....+.++
T Consensus 428 ~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 428 DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence 334445555554444444433322 234444444444444444444444444332211 00011111122455
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 528 VDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
+.++.+.|+.-. .+.|- ..+|-.+..+..+.+++..|.+.|..... .| +...||++..+|.+.|+-.+|...++
T Consensus 501 fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 501 FSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 555555555433 22332 55566666666666677776666666655 33 45567777777777777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 605 KILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 605 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
++++-+-++...|.+...+..+-|.+++|++.++++.+.
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777666666666666666666777777777766666554
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=1.3e-06 Score=73.37 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
....-.+...+...|++++|.++|+-... +-+...|-.|+..|...|++++|+..|.++..++|+++.++.+++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45555677788899999999999998876 4467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 005329 626 AKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~ 643 (702)
..|+.++|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=4.6e-06 Score=75.80 Aligned_cols=154 Identities=11% Similarity=0.116 Sum_probs=118.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005329 453 INMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGF 532 (702)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 532 (702)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446778888877765554433221 01223566788888888877653 556778999999999999999999
Q ss_pred HHHHHhHHhhCCCCC-hhhHHHHHHHH-HhcCC--HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005329 533 HYFNLMSDKYGFVPS-KEHYGCMIDLL-CRAGR--LSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKI 606 (702)
Q Consensus 533 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 606 (702)
..|++..+ +.|+ ...+..+..++ ...|+ .++|.+++++... .| +..++..++..+...|++++|+..|+++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999874 4675 78888888864 67777 5999999999988 44 6778899999999999999999999999
Q ss_pred HHhCCCCchhHH
Q 005329 607 LELHPSCAGTHI 618 (702)
Q Consensus 607 ~~~~p~~~~~~~ 618 (702)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987665443
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=1e-06 Score=75.36 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005329 543 GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
...|+ ......++..+...|++++|...++.+.. +.+...|..++..+...|++++|...++++++.+|.++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34554 45566677778888888888888888765 3466778888888888888999999999888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 620 LANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++.+|...|++++|...+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999888887653
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=6.4e-06 Score=84.44 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=145.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 005329 441 GLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT 520 (702)
Q Consensus 441 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 520 (702)
+.+|-...-..+...+...|-...|..+|++. ..|...|.+|...|+..+|..+..+..+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555555566777888888888888888764 4666777788888888888888777766 3778888888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 005329 521 ACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 598 (702)
......-+++|+++++....+ .-..+.....+.++++++.+.|+.-.. +-...+|-.++.+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777788888888765332 122233334457888888888877665 3356688888888888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCee
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIKEPGW 651 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 651 (702)
|...|...+.++|++...|+++..+|.+.|+..+|...+++..+-...+-..|
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 88888888888888888888888888888888888888888877664443333
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.9e-05 Score=71.38 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005329 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
|... ..+...+...|+-+....+..+.... .+-|......++....+.|++..|...+.+... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4444 55667778888888888877775532 233445566688888999999999999999874 2355699999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHH
Q 005329 556 DLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREA 633 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 633 (702)
-+|.+.|++++|..-|.+..+ ..++...+.++..+.-.|+.+.|+.++..+....+.+..+-.+|+.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999988877 446778899999999999999999999999999998999999999999999999999
Q ss_pred HHHHH
Q 005329 634 AEVRK 638 (702)
Q Consensus 634 ~~~~~ 638 (702)
..+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 87654
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.002 Score=64.45 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005329 392 EEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLER-TAMIKSALINMYSKCGSIKEASQIFY 470 (702)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 470 (702)
.+.....++++...-..--+.+|...++...+..-++.|+.+|.++.+.+..+ ++.++++++..|| +++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555554442222222345555555556666666666666666665555 5666666666555 355666666666
Q ss_pred hCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005329 471 ETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS--VTFMGVLTACSHAGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 471 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 541 (702)
.-.+ .++.--...++-+...|+-..+..+|++....++.|+. ..|..++.-=+.-|+...+.++-+++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4332 23333344555556666666666666666665555544 35666666556666666666665555443
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.0034 Score=66.71 Aligned_cols=159 Identities=12% Similarity=0.011 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCChHH---HHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005329 479 SWTAMINGYAEHGYSQE---AIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
+-+.|+..+.+.++... |+-+++.-.... +-|..+-..++..|+..|-+..|.++|+.+--+ .+..|...|. +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 45677888888887663 444555444332 335556677889999999999999999998666 6666644442 34
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCchhHHHHHHHHHhcC
Q 005329 556 DLLCRAGRLSDAENMIENMPH--Q-KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP----SCAGTHITLANIYAAKG 628 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g 628 (702)
..+...|++..+...+..... . .-..+-..+..+ .+.|.+....+...-=-.+.- .-..+-......+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 556667788877777766544 1 111222223333 466766655554432222221 11233445666677788
Q ss_pred ChHHHHHHHHHHH
Q 005329 629 RWREAAEVRKMMR 641 (702)
Q Consensus 629 ~~~~A~~~~~~~~ 641 (702)
+.++-...++.|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888877775
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00036 Score=80.98 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHcccCcHHHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005329 418 LSVCGNMAILEQGKQIHAHVMSI----GLER-TAMIKSALINMYSKCGSIKEASQIFYETE 473 (702)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 473 (702)
..++...|+.+.|...++.+... |... ...+...+..++.+.|+.++|...+.+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555554444332 1111 12234445556666677766666666544
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00012 Score=66.18 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=71.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc----cCcHHH
Q 005329 455 MYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH----AGLVDL 530 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 530 (702)
.|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+..
T Consensus 117 i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhh
Confidence 4555556666655555422 1122111223334445556666666666531 233444444444332 234555
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 005329 531 GFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDV-NCGRHTAEKIL 607 (702)
Q Consensus 531 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 607 (702)
|.-+|++|.++ ..|+..+.+....++...|++++|..+++++.. ..++.+...++..-...|+. +-..+.+.++.
T Consensus 192 AfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 192 AFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 55555555432 345555555555555555555555555555544 22344444444443444432 33334444444
Q ss_pred HhCCCCc
Q 005329 608 ELHPSCA 614 (702)
Q Consensus 608 ~~~p~~~ 614 (702)
..+|.++
T Consensus 270 ~~~p~h~ 276 (299)
T KOG3081|consen 270 LSHPEHP 276 (299)
T ss_pred hcCCcch
Confidence 4555443
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9e-06 Score=81.26 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=162.0
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCcHHH
Q 005329 354 MYSKCGQLTSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPN-EFAFASVLSVCGNMAILEQ 429 (702)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 429 (702)
-+.+.|++.+|.-.|+..+.. +..+|--|.......++-..|+..+++..+ +.|+ ......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 356777888888888777554 445777777777777777778777777766 3443 3344445555555565555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHc-hhCCC
Q 005329 430 GKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKV-PMVGL 508 (702)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~ 508 (702)
|...++.-+...++-- +.... .++...-+. ..+..........++|-++ .+.+.
T Consensus 372 Al~~L~~Wi~~~p~y~----------~l~~a-------------~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYV----------HLVSA-------------GENEDFENT--KSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHHhCccch----------hcccc-------------CccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5555554444332100 00000 000000000 0111111223334444443 44554
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHH
Q 005329 509 RPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWST 585 (702)
Q Consensus 509 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~ 585 (702)
.+|+.....|.-.|--.|.+++|+..|+.+. .++|+ ..+||.|.-.++...+.++|+..|+++.. +|. ..++..
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 5777777777777888999999999999887 45776 78899999999999999999999999988 665 458888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHHhcCChHHHH
Q 005329 586 LLRACMVQGDVNCGRHTAEKILELHPSC----------AGTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~ 634 (702)
|+-.|...|.+++|...|-.++.+.+.+ -.+|.+|=.++.-.++.+-+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9999999999999999999998876441 136666666666666665443
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.3e-07 Score=56.22 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=19.2
Q ss_pred CCCCchhHHHHHHHHhhhCCChHHHHHHHhcc
Q 005329 239 GFDVVSFVANSLATMYSKCGKLDYSLRLFERM 270 (702)
Q Consensus 239 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 270 (702)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=1.9e-07 Score=56.62 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=23.8
Q ss_pred cCCCchhHHHHHHHhhhcCCChhHHHHHhccCC
Q 005329 138 GFVNSVFVGSALLDMYTKLGKIELGCRVFDEMP 170 (702)
Q Consensus 138 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 170 (702)
|+.||..+||+||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3.2e-05 Score=83.53 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHH
Q 005329 442 LERTAMIKSALINMYSKCGSIKEASQIFYETES--D-DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMG 517 (702)
Q Consensus 442 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 517 (702)
...+...+..|.......|.+++|..+++...+ | +...+..++.++.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 344566666777777777888888887777653 3 4556667777777788888888877777764 4544 45556
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
+..++...|++++|.++|+++... .|+ ...+..+..++...|+.++|...|++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677778888888888877642 344 66777777777778888888887777765
No 126
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=8.6e-05 Score=72.66 Aligned_cols=177 Identities=8% Similarity=0.031 Sum_probs=114.3
Q ss_pred CHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCCh--HHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005329 461 SIKEASQIFYETES---DDIVSWTAMINGYAEHGYS--QEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYF 535 (702)
Q Consensus 461 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 535 (702)
++++++..++++.+ .+..+|+-....+.+.|+. ++++.+++++.+.. +-|..+|+.....+...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555554432 2334555444444445542 56777777777642 335567777777777778888888888
Q ss_pred HHhHHhhCCCC-ChhhHHHHHHHHHhc---CCH----HHHHHHHHhCCC--CCCHHHHHHHHHHHHhc----CCHHHHHH
Q 005329 536 NLMSDKYGFVP-SKEHYGCMIDLLCRA---GRL----SDAENMIENMPH--QKDDVVWSTLLRACMVQ----GDVNCGRH 601 (702)
Q Consensus 536 ~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~----g~~~~A~~ 601 (702)
+++++. .| +...|+....++.+. |.. ++++.+..++.. +.+...|+-+...+... ++..+|.+
T Consensus 166 ~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 166 HQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 888754 33 355566555554443 222 456666655554 34567888887777763 44567888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 005329 602 TAEKILELHPSCAGTHITLANIYAAKG------------------RWREAAEVRKMMR 641 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 641 (702)
.+.++++.+|+++..+..|+++|.... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888989999999999998643 2366777777773
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=5.8e-05 Score=74.32 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
.|+++.|+..++.+... .|+ +.......+.+.+.|+.++|.+.++++.. .|+ ...+..+..++.+.|+..+|+.
T Consensus 319 ~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34444444444444322 232 23333334444444444444444444444 333 3333444444444444444444
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHh-----------------cCChHHHHHHHHHHHhC
Q 005329 602 TAEKILELHPSCAGTHITLANIYAA-----------------KGRWREAAEVRKMMRSK 643 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~~-----------------~g~~~~A~~~~~~~~~~ 643 (702)
.++.....+|+++..|..|+.+|.. .|+|++|+..+....++
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4444444444444444444444444 45555665555555543
No 128
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=3.1e-05 Score=75.68 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=137.2
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcC-ChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCc--HH
Q 005329 456 YSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHG-YSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGL--VD 529 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~ 529 (702)
+...++.++|+....++.. .+..+|+....++...| ++++++..++++.+.. +-+..+|+.-...+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 3445677778777777653 24456666666677777 6799999999998753 3344566655444555555 36
Q ss_pred HHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CC----HHHH
Q 005329 530 LGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQ---GD----VNCG 599 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~---g~----~~~A 599 (702)
.+.++++.+.+. .|. ..+|+....++.+.|+++++++.++++.+ ..+..+|+.....+.+. |. .+.+
T Consensus 126 ~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 788889888743 564 78888888899999999999999999987 45677888877776554 22 3578
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 005329 600 RHTAEKILELHPSCAGTHITLANIYAAK----GRWREAAEVRKMMRSKG 644 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 644 (702)
+....++++.+|+|..+|..+..++... ++..+|.+...+..+.+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 8888999999999999999999999883 45677888887766543
No 129
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=1.6e-05 Score=75.51 Aligned_cols=183 Identities=12% Similarity=-0.016 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CH---HH
Q 005329 408 RPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLER--TAMIKSALINMYSKCGSIKEASQIFYETES--D-DI---VS 479 (702)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~ 479 (702)
......+......+...|+++.|...++.+....... ....+..+..++.+.|++++|...|+++.+ | +. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3455667777788899999999999999998765322 124567788999999999999999998763 2 22 24
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhh
Q 005329 480 WTAMINGYAEH--------GYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEH 550 (702)
Q Consensus 480 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 550 (702)
+..+..++... |++++|.+.|+++... .|+.. ....+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55666666654 7889999999999874 45542 2222211100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH-QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
...+...+.+.|++++|...+++... .| ....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23566778899999999999988766 23 346888999999999999999999888877666
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=6.1e-06 Score=82.13 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=104.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH
Q 005329 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACM 591 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~ 591 (702)
....|+..+...++++.|+++|+++.+. .|+ ....|++.+...++-.+|.+++.+... .| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667777788999999999999755 355 455688888888999999999988877 34 6667777778899
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 592 VQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
..++++.|+.+.+++++..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.3e-05 Score=69.15 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 005329 480 WTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDL 557 (702)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 557 (702)
|..++-+....|+.+.|...++++... + |.+. .-..-.--+...|.+++|+++|+.+.++ +|+ ..++-.=+-+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHH
Confidence 334444555566666777766666654 2 3332 2111112234456677777777776654 343 4455444455
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC---ChHH
Q 005329 558 LCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG---RWRE 632 (702)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 632 (702)
.-..|+--+|++-+.+..+ ..|...|.-+...|...|+++.|.-.+++++=..|-++-.+..++.++...| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 5556666666665555544 3566677777777777777777777777777777777777777777766555 4445
Q ss_pred HHHHHHHHHhCCC
Q 005329 633 AAEVRKMMRSKGV 645 (702)
Q Consensus 633 A~~~~~~~~~~~~ 645 (702)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6666666666444
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00016 Score=65.36 Aligned_cols=150 Identities=11% Similarity=0.042 Sum_probs=117.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH---
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLC--- 559 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 559 (702)
-...|+..|++++|++...... ..+ ....=...+.+..+++.|.+.++.|.+- . +..+.+.|..++.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d-ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQI---D-EDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc---c-hHHHHHHHHHHHHHHh
Confidence 3456889999999999987722 222 2222334456778899999999999632 2 4556665655554
Q ss_pred -hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHH-H
Q 005329 560 -RAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAA-E 635 (702)
Q Consensus 560 -~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~ 635 (702)
-.+.+.+|.-+|+++.. +|.+.+.+..+.++...|++++|+.+++.++..++++++++.+++-+-...|+-.++. +
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 45678999999999988 6889999999999999999999999999999999999999999999988999887653 4
Q ss_pred HHHHHHh
Q 005329 636 VRKMMRS 642 (702)
Q Consensus 636 ~~~~~~~ 642 (702)
.+..+..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 5555544
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=9.6e-05 Score=72.83 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=82.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHH
Q 005329 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLC 559 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 559 (702)
.....+...|++++|+..++.++.. .|+. .........+...++.++|.+.++++.. ..|+ ....-.+..+|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all 385 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 3334455667777777777777654 3444 3444445566777777777777777763 3666 445556677777
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 560 RAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 560 ~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
+.|++.+|+.++++... +.++..|..|..+|...|+..++....-+...+.-
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 77777777777777665 34566777777777777777777777776666654
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.26 E-value=0.00017 Score=79.39 Aligned_cols=220 Identities=13% Similarity=0.170 Sum_probs=159.5
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-HHHHHHHHHH
Q 005329 413 AFASVLSVCGNMAILEQGKQIHAHVMSI-GLER---TAMIKSALINMYSKCGSIKEASQIFYETESD-D-IVSWTAMING 486 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~ 486 (702)
.|...|.-....++.+.|+++.+++... ++.- -..+|.++++....-|.-+...++|+++.+- | -..|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4555555566667777777776666542 1111 1335666666666677778888888887752 3 3578888999
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC
Q 005329 487 YAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCRAGR 563 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 563 (702)
|.+.+++++|.++++.|.+. +.-....|..++..+.+.++-+.|..++.++.+. -|. .......+..-.+.|+
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999875 4556678888999999999999999999988754 454 4445556667778999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhc-CChHHHHHH
Q 005329 564 LSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH--PSCAGTHITLANIYAAK-GRWREAAEV 636 (702)
Q Consensus 564 ~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~~A~~~ 636 (702)
.+.+..+|+.... +.....|+..+..-.++|+.+-+..+|++++.+. |.....++..=.-|.++ |+-+.+..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999998877 4577899999999999999999999999999986 54444444433334443 554444333
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=1.9e-05 Score=67.44 Aligned_cols=114 Identities=9% Similarity=0.073 Sum_probs=90.5
Q ss_pred HHHHchhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 499 LFEKVPMVGLRPDS-VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 499 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
.+++... ..|+. .....+...+...|++++|.+.|+.+... .| +...+..+...+.+.|++++|..+++....
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554 34543 45666777788899999999999988754 34 478888899999999999999999988765
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005329 577 --QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 577 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
+.+...+..+...+...|+++.|...++++++.+|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 45677888889999999999999999999999999776643
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.0002 Score=78.25 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc
Q 005329 449 KSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA 525 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 525 (702)
+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+.-.|... +.++|.+++.+.... +...
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~ 182 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKK 182 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhh
Confidence 33445555555555555555554442 2444555555555555 555555555544432 3333
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 526 GLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
+++..+.++|.++... .|+ ...+..+.+.....-.. ..-..++.-+-..|...++++.+..+++
T Consensus 183 kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4455555555555422 232 22222222211111011 1122344445556667777888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHH
Q 005329 605 KILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 605 ~~~~~~p~~~~~~~~l~~~~~ 625 (702)
.+++.+|.|.....-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 888888888777777777776
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=3.9e-05 Score=66.18 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=63.4
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDD----VVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~ 598 (702)
.++...+.+.++.+...++-.|- ....-.+...+...|++++|...|+.... .|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55556666666666544211110 22223344556666666666666666555 2222 233445556666677777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
|+..++.. ...+..+..+..+|++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 76666552 223334556666777777777777777776653
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.3e-05 Score=73.76 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHH
Q 005329 521 ACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~ 597 (702)
-..+.+++.+|+..|.+++ .+.|+ ...|..=..+|.+.|.++.|++-.+.... .| ...+|..|+.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3455667777777777766 45664 55555566677777777777777776665 33 3457777777777777777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHH
Q 005329 598 CGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
+|++.|+++++++|++......|-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHH
Confidence 777777777777776665544443
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00012 Score=65.61 Aligned_cols=150 Identities=22% Similarity=0.216 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHchh---CC-CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCH
Q 005329 491 GYSQEAIHLFEKVPM---VG-LRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRL 564 (702)
Q Consensus 491 g~~~~A~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 564 (702)
.+.++..+++.++.. .| ..|+.. .|-.++-+....|..+.|...++.+..++ |. ..+-..-.-.+...|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 456777777766653 34 566664 46667777888999999999999997663 44 33333334456788999
Q ss_pred HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 565 SDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 565 ~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
++|.++++.... .| +..++-.-+......|+.-+|++-+..-++..|.|.+.|.-|+.+|...|++++|.--++++.=
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999988 44 5667777777788899999999999999999999999999999999999999999999999875
Q ss_pred C
Q 005329 643 K 643 (702)
Q Consensus 643 ~ 643 (702)
.
T Consensus 183 ~ 183 (289)
T KOG3060|consen 183 I 183 (289)
T ss_pred c
Confidence 3
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.19 E-value=5.3e-06 Score=61.05 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 005329 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG-RWREAAEVRKMMRSK 643 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 643 (702)
++..|..++..+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999 799999999988763
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=1.9e-05 Score=62.54 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 627 (702)
.+..++..+...|++++|...++++.. +.+...+..++..+...|+++.|...++++.+..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 355677778888999999999988765 334467778888888999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 005329 628 GRWREAAEVRKMMRSK 643 (702)
Q Consensus 628 g~~~~A~~~~~~~~~~ 643 (702)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887654
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=2.2e-06 Score=65.87 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005329 561 AGRLSDAENMIENMPH-QK---DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~-~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
.|++++|+.+++++.. .| +...+..++.++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677788887777766 33 345566678888888888888888888 667777777888888888888999988888
Q ss_pred HHH
Q 005329 637 RKM 639 (702)
Q Consensus 637 ~~~ 639 (702)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.14 E-value=3.6e-05 Score=64.07 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHH
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH-QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLA 621 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 621 (702)
++..++..+.+.|++++|.+.|+.+.. .|+ ...+..++.++...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777766654 232 2355556777777777777777777777776654 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 005329 622 NIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776654
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.10 E-value=4.9e-05 Score=76.31 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=64.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 005329 519 LTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGD 595 (702)
Q Consensus 519 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~ 595 (702)
...+...|+++.|++.|+++++. .|+ ...|..+..+|.+.|++++|+..++++.. +.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455666777777777766633 444 55566666667777777777777766655 2345566666666777777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005329 596 VNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
+++|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777666655555443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00015 Score=62.62 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS---VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGC 553 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~ 553 (702)
.|..++..+ ..++...+...++.+.... +.+. .....+...+...|++++|...|+.+... .-.|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344455555 4788888888888888753 2231 23344556778899999999999999876 32222 234456
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005329 554 MIDLLCRAGRLSDAENMIENMPHQ-KDDVVWSTLLRACMVQGDVNCGRHTAEKIL 607 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 607 (702)
|..++...|++++|+..++..... ..+..+...+..+...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788889999999999999886553 345577778888999999999999998763
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.08 E-value=8.7e-06 Score=58.97 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 586 LLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++..+...|++++|+..++++++.+|+++..+..++.++..+|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56678889999999999999999999999999999999999999999999999887654
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=2.8e-05 Score=71.71 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=80.9
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC
Q 005329 485 NGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAG 562 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 562 (702)
.-+.+.++|.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4577889999999999999974 55 66778888899999999999999888776 56777 889999999999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHH
Q 005329 563 RLSDAENMIENMPH-QKDDVVWST 585 (702)
Q Consensus 563 ~~~~A~~~~~~~~~-~p~~~~~~~ 585 (702)
++++|++.|++... .|+..+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 99999999999988 777665543
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00014 Score=72.57 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=91.1
Q ss_pred HHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchh
Q 005329 47 QLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNY 126 (702)
Q Consensus 47 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 126 (702)
|++.+...++++.|..+|+++.+.++.....+++.+...++-.+|++++.+..... +.+...+..-.+.+...++.+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHH
Confidence 44555666888888888888888777777778888888888888888888887552 4455566666667777888888
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCC
Q 005329 127 GESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMP 170 (702)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 170 (702)
|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888877764 3345578888888888888888888888776
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=9.4e-06 Score=50.14 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005329 175 VSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDS 209 (702)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 209 (702)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37888999999999999999999999888888873
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.00 E-value=2.4e-05 Score=57.25 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=47.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 591 MVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 591 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
...|++++|++.++++++.+|++...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999887764
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=0.0042 Score=68.32 Aligned_cols=148 Identities=9% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 005329 413 AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGY 492 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (702)
.+..+..+|.+.|+.+++..+++++.+.. +.++.+.|.+...|... ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 45555556666666666666666666655 44566666677777766 777777665543 233566667
Q ss_pred hHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005329 493 SQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 571 (702)
+..+.++|.++... .|+.. .+..+. +.+....+..--+.++-.+...|-..++|+++..++
T Consensus 185 ~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 185 YVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred chHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 77777777777753 33332 222222 222221122222344555556666667777777777
Q ss_pred HhCCC--CCCHHHHHHHHHHHH
Q 005329 572 ENMPH--QKDDVVWSTLLRACM 591 (702)
Q Consensus 572 ~~~~~--~p~~~~~~~l~~~~~ 591 (702)
+.+.+ +.+..+...++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 77666 334445555555554
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.2e-05 Score=49.70 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 005329 276 ISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNE 310 (702)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 310 (702)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00012 Score=68.04 Aligned_cols=105 Identities=22% Similarity=0.172 Sum_probs=91.8
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCchhHH
Q 005329 545 VP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQG---DVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
.| |...|..|...|...|+++.|..-|....+ .+++..+..+..++..+. ...++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 599999999999999999999999999887 567778888888765332 578999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005329 619 TLANIYAAKGRWREAAEVRKMMRSKGVIKEP 649 (702)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 649 (702)
.|+..+..+|++.+|...|+.|.+..+...+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987654433
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=97.97 E-value=0.00015 Score=61.31 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=84.1
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005329 543 GFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
|+.++ ....-....-+...|++++|..+|+-+.. .-+...|..|+..|...++++.|+..|..+..++++|+.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 22233445556789999999999988765 4467788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 005329 620 LANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+.+|...|+.++|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00016 Score=60.02 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 005329 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD----DVVWSTLL 587 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~ 587 (702)
++..+...+...|++++|.+.|+.+.+...-.|. ...+..++.++.+.|++++|...++.+.. .|+ ..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666677778888888888877654211111 34556677888888888888888887765 333 45677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005329 588 RACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 588 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
.++...|+.++|...++++++..|++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999999887765443
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.8e-05 Score=48.44 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005329 175 VSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQG 207 (702)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 207 (702)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00067 Score=65.35 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=115.3
Q ss_pred HHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhhCCCCChhhHHH---H-----
Q 005329 485 NGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT--ACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGC---M----- 554 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~---l----- 554 (702)
.++...|++++|.+.--...+. .++. .+..+++ ++-..++.+.|...|++.+ .+.|+...-.. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4566788999888876665542 2221 2223333 3346778899999999876 55776332221 1
Q ss_pred -----HHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005329 555 -----IDLLCRAGRLSDAENMIENMPH-Q-----KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 555 -----~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
.+-..+.|++.+|.+.+.+... . |+...|.....+..+.|+..+|+.--+.+++++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 2345688999999999999877 3 4556677777778899999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 005329 624 YAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~ 643 (702)
+...++|++|.+.++++.+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998764
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.1e-05 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005329 276 ISWTTIITSYVQMGEEENAFDAFVRMQESDVKP 308 (702)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (702)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00015 Score=64.66 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
...+..++..+...|++++|...|++... .|+ ...+..++..+...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44566677777778888888888877654 222 3577888888999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 005329 623 IYAAKGR 629 (702)
Q Consensus 623 ~~~~~g~ 629 (702)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00016 Score=72.68 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=81.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhc
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRA 561 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 561 (702)
....+...|++++|++.|+++++.. +-+...|..+..++...|++++|+..++.+.+ +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999998753 34566788888889999999999999999874 4665 77888899999999
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 005329 562 GRLSDAENMIENMPH-QKDDVVWSTLLR 588 (702)
Q Consensus 562 g~~~~A~~~~~~~~~-~p~~~~~~~l~~ 588 (702)
|++++|...|+++.. .|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999877 565544444433
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.83 E-value=0.046 Score=55.09 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=124.0
Q ss_pred HHHHHHHHhhCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 005329 462 IKEASQIFYETES----DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-DSVTFMGVLTACSHAGLVDLGFHYFN 536 (702)
Q Consensus 462 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~ 536 (702)
.+.....+++... .-..+|..+++.-.+..-...|..+|.++.+.+..+ .....++++..+| .++...|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 3444444444432 233467778888888888999999999999988777 5567777777655 578899999999
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 537 LMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQ-----KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 537 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
.=.+++|- ++.-....++.+...++-..|..+|++.... .....|..++.--..-|+...+..+-++.....|
T Consensus 426 LGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 87776442 2444456788888999999999999998763 2457999999999999999999999999988777
Q ss_pred CCc----hhHHHHHHHHHhcCChHHHHH
Q 005329 612 SCA----GTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 612 ~~~----~~~~~l~~~~~~~g~~~~A~~ 635 (702)
.+. ..-..+.+-|.=.+.+..-..
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHH
Confidence 331 233344555655555544333
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00019 Score=63.87 Aligned_cols=93 Identities=12% Similarity=-0.059 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
...|..++..+...|++++|...|++... .| ...+|..++..+...|++++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 55667777888888999999998888754 22 23578889999999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 005329 623 IYA-------AKGRWREAAEVRKMM 640 (702)
Q Consensus 623 ~~~-------~~g~~~~A~~~~~~~ 640 (702)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 998 888888666666554
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.79 E-value=8.4e-05 Score=55.30 Aligned_cols=59 Identities=22% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
...|.+.++++.|.++++++++++|+++..+...+.++.+.|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999999999999999999999999999987654
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=6.1e-05 Score=54.49 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 554 MIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
+...+...|++++|...|+++.. .| +...|..++.++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46778899999999999999887 44 577889999999999999999999999999999874
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0033 Score=53.73 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHH
Q 005329 508 LRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK---DDVVW 583 (702)
Q Consensus 508 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p---~~~~~ 583 (702)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++..|...++++.+ +| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777777888899999999999999988653 3344577788888899999999999999988766 32 33455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..+...+...|++..|+..|+.++.-.| ++..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5678889999999999999999999988 788888888999999999998776666554
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.00083 Score=59.93 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 005329 477 IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD--SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGC 553 (702)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 553 (702)
...+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566666667777777777777777665332222 245666666667777777777777766532 443 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCC
Q 005329 554 MIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGR 629 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 629 (702)
++.++...|+...+..-++... ..+++|.+.++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666555443332211 12678888999999988876 4444444444443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0013 Score=69.09 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.++++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555555 3445555555555555555555555554443
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.001 Score=69.86 Aligned_cols=144 Identities=11% Similarity=0.005 Sum_probs=105.9
Q ss_pred hCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHchhCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHH
Q 005329 471 ETESDDIVSWTAMINGYAEHG-----YSQEAIHLFEKVPMVGLRPDS-VTFMGVLTACSHA--------GLVDLGFHYFN 536 (702)
Q Consensus 471 ~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~ 536 (702)
.....+...|...+.+..... ....|..+|++..+. .|+. ..+..+..++... .+...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 334568899999988865432 367899999999984 6765 4566555444322 12334444444
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 537 LMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 537 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
..........+...|..+.-.....|++++|...++++.. .|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4332211233467788887777788999999999999988 789899999999999999999999999999999998885
Q ss_pred h
Q 005329 616 T 616 (702)
Q Consensus 616 ~ 616 (702)
.
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.14 Score=55.14 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHHhccCcHHHH---HHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHH-HHHH
Q 005329 516 MGVLTACSHAGLVDLG---FHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPHQ-KDDVVWST-LLRA 589 (702)
Q Consensus 516 ~~ll~~~~~~g~~~~A---~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~-l~~~ 589 (702)
+.++..|.+.++.... +-+++.-. ...|. ..+--.+++.|.-.|-+..|.+.|..+.-+ -...|... +...
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGL---TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 4566677777776643 33333322 12333 344456788888888888888888887652 12222222 3344
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
+...|++..+...+...+....++-.----++..-.+.|.+.+..+.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 55778888888888888776644433222333334455666655443
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.072 Score=51.47 Aligned_cols=282 Identities=14% Similarity=0.130 Sum_probs=180.2
Q ss_pred CCHHHHHHHHhcC---CCCChhhHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCcHHHHH
Q 005329 359 GQLTSTSIVFHGM---IRRDIISWSTIIGG--YSQGGYEEEAFEYLALMRREGPRPNEF--AFASVLSVCGNMAILEQGK 431 (702)
Q Consensus 359 g~~~~a~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~ 431 (702)
|+-..|.+.-.+. ...|......|+.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4455555444332 22344444444433 2346888888888888865 22222 2334444455678888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHHH--HHHHHHHHH---HcCChHHHHHHHH
Q 005329 432 QIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETE-----SDDIVS--WTAMINGYA---EHGYSQEAIHLFE 501 (702)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~li~~~~---~~g~~~~A~~~~~ 501 (702)
.+-+..-..- +.-.....+.+...+..|+++.|+++.+.-. ++++.- --.|+.+-. -..+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7766655432 2234566778888999999999999987644 344321 122222211 1234555665555
Q ss_pred HchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 005329 502 KVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH---- 576 (702)
Q Consensus 502 ~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 576 (702)
+..+ +.||.. .-..-..++.+.|+..++-.+++.+.+. .|.+..+...+ +.+.|+. +..-+++...
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhc
Confidence 5443 567764 3344567789999999999999999854 77777664333 3455654 3333332221
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCccCCeeeEE
Q 005329 577 -QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK-GRWREAAEVRKMMRSKGVIKEPGWSRI 654 (702)
Q Consensus 577 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 654 (702)
+.+......+..+-...|++..|..-.+.+....| ....|..|+++-... |+-.++...+-+..+. ..+|.|+-.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ad 401 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTAD 401 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccccc
Confidence 34566777888888999999999999999999999 778889999987665 9999999999887764 345666544
Q ss_pred EE
Q 005329 655 KV 656 (702)
Q Consensus 655 ~~ 656 (702)
.+
T Consensus 402 g~ 403 (531)
T COG3898 402 GV 403 (531)
T ss_pred Cc
Confidence 33
No 171
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.62 E-value=5e-05 Score=45.96 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHH
Q 005329 602 TAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 602 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 635 (702)
+|+++++++|+++..|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.0005 Score=54.11 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQG 594 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g 594 (702)
+...+...|++++|...++.+.+. .|+ ...+..+...+...|++++|.+.++.... +.+..++..++..+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344444555555555555555422 222 34445555555556666666666655443 223345566666666666
Q ss_pred CHHHHHHHHHHHHHhCC
Q 005329 595 DVNCGRHTAEKILELHP 611 (702)
Q Consensus 595 ~~~~A~~~~~~~~~~~p 611 (702)
+++.|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666666555
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0026 Score=61.58 Aligned_cols=135 Identities=13% Similarity=0.174 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005329 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA-CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
.+|..++....+.+..+.|..+|++..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998543 2334444444333 333577788999999998774 445778888899
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 557 LLCRAGRLSDAENMIENMPH-QK----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.+.+.|+.+.|..+|++... -| ....|...+..-.+.|+.+.+..+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999887 23 3459999999999999999999999999999886443
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.6e-05 Score=43.96 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005329 175 VSWTAIITGLVRAGHNKEGLIYFAEMWRSKE 205 (702)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 205 (702)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.00084 Score=54.70 Aligned_cols=89 Identities=19% Similarity=0.029 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CchhHHHHHHHH
Q 005329 553 CMIDLLCRAGRLSDAENMIENMPHQ----K-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS---CAGTHITLANIY 624 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 624 (702)
.+..++-..|+.++|+.+|++.... + ....+..+...+...|++++|+.++++.++..|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677778888888888776651 1 1346667778888888888888888888888777 667777788888
Q ss_pred HhcCChHHHHHHHHHHH
Q 005329 625 AAKGRWREAAEVRKMMR 641 (702)
Q Consensus 625 ~~~g~~~~A~~~~~~~~ 641 (702)
...|+.+||+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88888888888765543
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.0003 Score=53.91 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHchhCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 005329 491 GYSQEAIHLFEKVPMVGL-RPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAE 568 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 568 (702)
|+++.|+.+++++.+... .|+...+..+..++.+.|++++|.++++. . ...|+ ......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 444555555555444321 01222233344444455555555555544 1 11222 222223344444455555554
Q ss_pred HHHH
Q 005329 569 NMIE 572 (702)
Q Consensus 569 ~~~~ 572 (702)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00017 Score=52.88 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 005329 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQG-DVNCGRHTAEKILELHP 611 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 611 (702)
+...|..++..+...|++++|+..|++... .| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356677888888888999999988888877 44 5678888888999998 79999999999999887
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=43.62 Aligned_cols=31 Identities=29% Similarity=0.710 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005329 276 ISWTTIITSYVQMGEEENAFDAFVRMQESDV 306 (702)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 306 (702)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.54 E-value=0.11 Score=51.36 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=53.2
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 579 DDVVWSTLLRA--CMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 579 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
+...-|.|..+ +..+|++.++.-.-.-+.+..| ++.+|..+|.++....+++||.++++.+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44566777776 4589999999988888889999 9999999999999999999999999865
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.015 Score=56.60 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=59.6
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHH
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA-GLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLL 558 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 558 (702)
+..|...|++..|-..+.+ +...|... |+++.|++.|++..+-+..... ..++..++..+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 3445555555555444433 33345555 6666666666665543321211 33455566677
Q ss_pred HhcCCHHHHHHHHHhCCC----CC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 559 CRAGRLSDAENMIENMPH----QK----DD-VVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~----~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
.+.|++++|.++|++... .+ +. ..+-..+-.+...||...|...+++..+.+|.-
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 777777777777766533 11 11 122223334556777777777777777777643
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.17 Score=53.35 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=48.8
Q ss_pred HCCCCCChhhHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCC---ChHHHHHHHhccCC-
Q 005329 202 RSKEQGDSYTFAI-----VLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCG---KLDYSLRLFERMST- 272 (702)
Q Consensus 202 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~- 272 (702)
+-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..++.....-+.+.. +.+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555554443 3444455566666666555443211111 444555555555442 22333333344443
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 005329 273 -RDVISWTTIITSYVQMGEEENAFDAFVR 300 (702)
Q Consensus 273 -~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (702)
.+..+|..+.+-....|+++.|..+++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3455666666666666777766666554
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0019 Score=57.42 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCC
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRACM-------VQGDVN-------CGRHTAEKILELHPSC 613 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~ 613 (702)
++..+..++...|++++|...+++... . ....++..++..+. ..|+++ +|...++++++.+|++
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 344444444555555555555444433 1 12233333333333 455544 5666667777777754
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.12 Score=50.79 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHH
Q 005329 450 SALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVD 529 (702)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 529 (702)
+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++-.++... +-.+.-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455555666777777777666666777777777777777777665554322 112355666666777777777
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 005329 530 LGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIEN 573 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (702)
+|..+...+. +..-+..|.+.|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665421 13345666667777666655433
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.00086 Score=63.59 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhcCCh
Q 005329 559 CRAGRLSDAENMIENMPH-QKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLANIYAAKGRW 630 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 630 (702)
.+.|++++|...|+.... .|+ +..+.-++..|...|++++|...|+++++..|++ +..+..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555555555555444 232 2344455556666666666666666666655543 33444455666666666
Q ss_pred HHHHHHHHHHHhC
Q 005329 631 REAAEVRKMMRSK 643 (702)
Q Consensus 631 ~~A~~~~~~~~~~ 643 (702)
++|..+++++.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665553
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00012 Score=53.53 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005329 561 AGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
.|++++|+..|+++.. .| +...+..++.+|.+.|++++|.++++++...+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 3444444444444433 22 333444444444444444444444444444444443333
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.13 Score=50.88 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHc-ccC---cHHHHHHHHHHHHHhCCCC
Q 005329 376 IISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASV-------LSVCG-NMA---ILEQGKQIHAHVMSIGLER 444 (702)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~ 444 (702)
+.++..++....+.++..+|...+.-+.. ..|+...-..+ -+..+ .-. +...-..+|+.+....+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 34666777777777887777777766654 23333211111 11111 111 1222233444444333321
Q ss_pred ChhHHHHHH---HHHHhcCC-HHHHHHHHhhCCC---CCHHHHHHHHH----HHHH---cCChHHHHHHHHHchhCCCCC
Q 005329 445 TAMIKSALI---NMYSKCGS-IKEASQIFYETES---DDIVSWTAMIN----GYAE---HGYSQEAIHLFEKVPMVGLRP 510 (702)
Q Consensus 445 ~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p 510 (702)
. .....|+ .-+-+.|. -++|+++++.+.. -|..+-|.+.. .|.+ ...+..-+.+-+-+.+.|++|
T Consensus 376 q-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 Q-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred H-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1 1111122 22334444 6677777776553 34444333221 2221 112233333334444567666
Q ss_pred CHH----HHHHHHHH--HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 005329 511 DSV----TFMGVLTA--CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWS 584 (702)
Q Consensus 511 ~~~----~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 584 (702)
-.+ .-|.|..| +...|++.++.-+-..+. .+.|++.+|..++-++....++++|..++..++ |+..+++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 432 23333332 346788888777666665 467888888888888888888888888888775 4555554
Q ss_pred H
Q 005329 585 T 585 (702)
Q Consensus 585 ~ 585 (702)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 3
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.41 E-value=0.0042 Score=52.55 Aligned_cols=94 Identities=6% Similarity=-0.028 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 005329 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGC 553 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 553 (702)
+....-.+...+...|++++|.++|+-+.. +.|. ..-|..|..+|...|++++|+..|..+.. +.|| +..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 333344444555566666666666665554 2332 23444555555556666666666665542 3343 555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005329 554 MIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~ 574 (702)
+..++...|+.+.|.+.|+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666655544
No 188
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.41 E-value=0.00073 Score=67.13 Aligned_cols=66 Identities=20% Similarity=0.084 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 578 KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGT---HITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 578 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+...|+.++.+|...|++++|+..|+++++++|++... |++++.+|...|+.++|+..++++.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677888888888888888888888888888877744 788888888888888888888877764
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.16 Score=49.53 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCCCC--hh
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP-----DSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKY-GFVPS--KE 549 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p~--~~ 549 (702)
++..++..+.+.|++++|+++|++........ +.. .|...+-++...||...|.+.++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34456677888888888888888876543221 111 22333445566788888888888876321 11112 33
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHhCCC
Q 005329 550 HYGCMIDLLCR--AGRLSDAENMIENMPH 576 (702)
Q Consensus 550 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 576 (702)
....|+.++-. ...+++|+.-|+.+..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 44556666643 3356677777777653
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0017 Score=65.33 Aligned_cols=119 Identities=10% Similarity=0.002 Sum_probs=94.0
Q ss_pred CCCchhHHHHHHHhhhcCCChhHHHHHhccCCC-C-----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005329 139 FVNSVFVGSALLDMYTKLGKIELGCRVFDEMPL-R-----NVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTF 212 (702)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 212 (702)
.+.+......++.......+++.+..++-+... | -..|.+++|+.|...|..+.+++++..=..-|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555666677777777778888887766552 2 1335679999999999999999999998899999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhC
Q 005329 213 AIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKC 257 (702)
Q Consensus 213 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 257 (702)
+.+|..+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998888777777766666665555
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.16 Score=49.85 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMV 592 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 592 (702)
.+.+..+.-|...|....|.++-++. + .|+...|...+.+|+..|+|++-..+-.. +.++..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35566677777888888887776655 4 47888999999999999999998887654 3456889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
.|+..+|..+..+ -.+..-+..|.+.|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988877 1225677889999999999876433
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0023 Score=49.94 Aligned_cols=80 Identities=13% Similarity=-0.049 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 005329 177 WTAIITGLVRAGHNKEGLIYFAEMWRSKE-QGDSYTFAIVLKASADSG--------ALNFGREIHTIMLKRGFDVVSFVA 247 (702)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 247 (702)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999987643 234577889999999999999999
Q ss_pred HHHHHHhhh
Q 005329 248 NSLATMYSK 256 (702)
Q Consensus 248 ~~li~~~~~ 256 (702)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.038 Score=52.11 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 585 TLLRACMVQGDVNCGRHTAEKILELHPSCA---GTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.++.-|.+.|++..|..-++.+++..|+.+ +.+..++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345568899999999999999999988764 567788899999999999998887653
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.33 E-value=0.0015 Score=62.84 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHH---hHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCH
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNL---MSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH--------QKDD 580 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p~~ 580 (702)
..|..|...|.-.|+++.|+...+. +.+.+|-... ...+..|.+++.-.|+++.|.+.|+.... ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666666677888888766543 2223343322 55677788888888888888887765432 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILEL----H--PSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
....+|..+|--..+++.|+.+.++=+.+ + ......++.|+.+|...|..++|+.+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566777777777888888887765543 2 22456788888888888888888887776554
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00049 Score=44.81 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
.+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999988875
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0034 Score=63.14 Aligned_cols=118 Identities=9% Similarity=0.135 Sum_probs=85.1
Q ss_pred CCchhHHHHHHHHhhhCCChHHHHHHHhccCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 005329 241 DVVSFVANSLATMYSKCGKLDYSLRLFERMST-R-----DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFA 314 (702)
Q Consensus 241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 314 (702)
+.+......+++.+....+++.+..++-+... | -..+..++|+.|.+.|..+.++.++..=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34444555555555555666666666555432 1 23455688888888888888888888888889999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005329 315 AIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKC 358 (702)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (702)
.||+.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999888888777666666666555555554
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.25 E-value=0.22 Score=48.34 Aligned_cols=243 Identities=13% Similarity=0.059 Sum_probs=100.8
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHH
Q 005329 85 AMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCR 164 (702)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 164 (702)
.|+++.|.+-|+.|...+ ....--+..|.-...+.|+.+.|...-+.....- +.-...+.+.+...+..|+|+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 556666666666664221 0001112222222334455555555544443332 2223455555555556666666666
Q ss_pred HhccCC-----CCCcc--hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHhccCChHHHHHHHH
Q 005329 165 VFDEMP-----LRNVV--SWTAIITGLV---RAGHNKEGLIYFAEMWRSKEQGDSYTF-AIVLKASADSGALNFGREIHT 233 (702)
Q Consensus 165 ~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~ 233 (702)
+++.-. +++.. .-..|+.+-. -.-++..|.+.-.+..+ +.||...- ...-+++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 555432 22221 1112222111 11234444443333322 33443321 122344555566666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhCCChHHH----HHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005329 234 IMLKRGFDVVSFVANSLATMYSKCGKLDYS----LRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPN 309 (702)
Q Consensus 234 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 309 (702)
.+-+....|+.. ++-.+.+.|+.... .+-++.|+..+..+.-.+..+-...|++..|..--+..... .|.
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pr 361 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APR 361 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cch
Confidence 555553333321 12223334432211 12233444444555555555555555555544444333322 344
Q ss_pred hhhHHHHHHHH-HccCchHHHHHHHHHHHH
Q 005329 310 EYTFAAIISAS-ANLARIQWGEQLHAHVLR 338 (702)
Q Consensus 310 ~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~ 338 (702)
...|..|.+.- +..|+-.++...+.+..+
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44444444332 223444444444444443
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.09 Score=54.12 Aligned_cols=227 Identities=15% Similarity=0.150 Sum_probs=111.6
Q ss_pred HHHHHccCchHHHH--HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHH
Q 005329 317 ISASANLARIQWGE--QLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEE 394 (702)
Q Consensus 317 l~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 394 (702)
=.+|.+..+...-+ .-++++.+.|-.|+.... ...++-.|.+.+|.++|.+ .|....
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enR 663 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENR 663 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhh
Confidence 34444444433222 223455556655655432 3344556777777666643 555566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005329 395 AFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES 474 (702)
Q Consensus 395 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 474 (702)
|+++|..|+-- -...-+...|..++-..+...-.+. ..+..--.+-.+++...|+.++|..+
T Consensus 664 AlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------ 725 (1081)
T KOG1538|consen 664 ALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------ 725 (1081)
T ss_pred HHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------
Confidence 66666655321 0112223334333333332222110 00000001233445555666665443
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHH
Q 005329 475 DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCM 554 (702)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 554 (702)
+..+|-.+-++++-+++.. .+..+...+...+.+...+..|-++|..|-. ...+
T Consensus 726 ------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksi 779 (1081)
T KOG1538|consen 726 ------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSL 779 (1081)
T ss_pred ------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHH
Confidence 2334444445555444432 2223444444444555666667777776632 2345
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 555 IDLLCRAGRLSDAENMIENMPH-QKDD-----------VVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
++.....++|++|..+-++..+ .|+. .-+...-.+|.+.|+..+|.++++++-.
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6666777777777777777665 2221 1223334566777888888888877654
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.36 Score=50.39 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHhhccCCchhhhHHHHHHHHh-cC--------CCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc
Q 005329 105 NMDPFILSLALKACALNVNVNYGESLHGYTVKT-GF--------VNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVV 175 (702)
Q Consensus 105 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 175 (702)
.|.+..|..+.......-.++.|+..|-+.... |+ ..+...-.+=+.+| .|++++|++++-++.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 567777777766555544555555444332211 11 11112222223333 3889999999988877664
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 176 SWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGD----SYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
-|..+.+.|+|-+..++++.- |-..| ...++.+...++....++.|.+.|..-... ...+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 366677778887777766541 11111 134566666666666777777776543321 2355
Q ss_pred HHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHH
Q 005329 252 TMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQ 331 (702)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 331 (702)
.++.+..++++-+.+-+.+++ |....-.+...+.+.|.-++|.+.|-+-- .| ...+..|...+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence 666666666666666666554 33445556667777777777766654321 11 123445555566655555
Q ss_pred HH
Q 005329 332 LH 333 (702)
Q Consensus 332 ~~ 333 (702)
+-
T Consensus 900 la 901 (1189)
T KOG2041|consen 900 LA 901 (1189)
T ss_pred HH
Confidence 43
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.22 E-value=0.00069 Score=51.08 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELH-------PSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+++.+...|...|++++|+..+++++++. |.-..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888888899999999999999988652 22256788999999999999999999998764
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.0013 Score=48.82 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 005329 555 IDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITL 620 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 620 (702)
...|.+.+++++|.++++.+.. +.+...|...+..+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3567888999999999998877 44566778888889999999999999999999999776655443
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.088 Score=45.38 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhH
Q 005329 475 DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHY 551 (702)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~ 551 (702)
|.+..-..|..++...|++.+|...|++...--+.-|......+.++....++...|...++.+.+. .|. +...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~pa~r~pd~~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY---NPAFRSPDGH 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc---CCccCCCCch
Confidence 4455556677888888888888888888775334456677777888888888888888888887654 243 5556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005329 552 GCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
-.+.+.|...|.+++|..-|+.... -|+.....-....+.++|+.+++..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 6678888888888888888888777 466555544555566778777776666555543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.0047 Score=58.62 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHH
Q 005329 514 TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK----DDVVWS 584 (702)
Q Consensus 514 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~ 584 (702)
.|...+....+.|++++|+..|+.+.+. .|+ ...+..++.+|...|++++|...|+.+.. -| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4554444445678899999999998866 344 35677888999999999999999988875 23 355666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.++..+...|+.+.|..+|+++++..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6777888999999999999999999997654
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.003 Score=61.32 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.++..+...|.+.+++..|++...++++++|+|...++.-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34555666666666677777777777777776777777777777777777777777766665
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.0089 Score=46.81 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=64.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccC--------chHHHHHHHHHHHHhCCCCchHHHHH
Q 005329 280 TIITSYVQMGEEENAFDAFVRMQESDV-KPNEYTFAAIISASANLA--------RIQWGEQLHAHVLRLGLVDSLSVANS 350 (702)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (702)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|..|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667999999999999999999 999999999999877643 24456788899999999999999999
Q ss_pred HHHHHHh
Q 005329 351 IMAMYSK 357 (702)
Q Consensus 351 l~~~~~~ 357 (702)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887765
No 206
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.0058 Score=59.22 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR-AGRLSDAENMIENMPH--QKDDVVWSTLLRA 589 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~ 589 (702)
.+|..++..+.+.+..+.|+.+|.++.+. -..+..+|-..+..-.+ .++.+.|.++|+...+ ..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999743 22345666666555334 5677779999999887 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSCA---GTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
+...|+.+.|..+|++++..-|... ..|...+.--.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876554 58888888888999999999999888763
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0058 Score=59.46 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
..++..|.-++.+.+++.+|+...+.... +++...+-.-+.+|...|+++.|+..|+++++++|+|..+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34677888899999999999999999877 6778888889999999999999999999999999999999999988887
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 005329 626 AKGRWREA-AEVRKMMRSK 643 (702)
Q Consensus 626 ~~g~~~~A-~~~~~~~~~~ 643 (702)
+..++.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77666654 7788888764
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.081 Score=51.63 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=35.7
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCH
Q 005329 524 HAGLVDLGFHYFNLMSDKYGFVPS-----KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDV 596 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~ 596 (702)
+.|++..|.+.|.+.+ ++.|+ ...|.....+..+.|+.++|+.-.+.... .|. ...+..-..++...+++
T Consensus 261 k~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443 33332 23333334444455555555555444443 111 11222222233344455
Q ss_pred HHHHHHHHHHHHhC
Q 005329 597 NCGRHTAEKILELH 610 (702)
Q Consensus 597 ~~A~~~~~~~~~~~ 610 (702)
++|++-++++.+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555544
No 209
>PRK11906 transcriptional regulator; Provisional
Probab=97.00 E-value=0.011 Score=59.09 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
|+.+...++.+....|+++.|...|+++..++|+.+..|...+++..-.|+.++|.+.+++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444444444445555555555555555555555555555555555555555444433
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.031 Score=51.24 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhcCChHHHH
Q 005329 586 LLRACMVQGDVNCGRHTAEKILELHPSCA---GTHITLANIYAAKGRWREAA 634 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 634 (702)
++..|.+.|.+..|..-++.+++..|+.+ ..+..++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 45668899999999999999999999775 45677888999999988554
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.1 Score=51.61 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=97.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-------CHHHHHHHHHHHHH---cCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 452 LINMYSKCGSIKEASQIFYETESD-------DIVSWTAMINGYAE---HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 452 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
++-.|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444566666666666666666542 12222234445566 78888888888775554556777777776665
Q ss_pred Hhc---------cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH----HHHHH---HhC-----CC--CC
Q 005329 522 CSH---------AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSD----AENMI---ENM-----PH--QK 578 (702)
Q Consensus 522 ~~~---------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~~--~p 578 (702)
|-. ....++|++.|.+.- .+.|+...--.++..+...|...+ ..++- ..+ .. ..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 432 224677888887654 456664433333444444443222 12221 111 11 24
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
+-..+.+++.++.-.|+++.|.+.+++++.+.|+...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 5556678999999999999999999999999875543
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.27 Score=50.81 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHhhccCCchhhhH--HHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHH
Q 005329 115 LKACALNVNVNYGES--LHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKE 192 (702)
Q Consensus 115 l~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (702)
-++|.+-++..-.+- -++.+.+.|-.|+.... ...++-.|++.+|-++|.+ .|.-.+
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enR 663 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENR 663 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhh
Confidence 344444444433332 24556667766776543 3445566888888888864 455566
Q ss_pred HHHHHHHHH
Q 005329 193 GLIYFAEMW 201 (702)
Q Consensus 193 a~~~~~~m~ 201 (702)
|+++|..|.
T Consensus 664 AlEmyTDlR 672 (1081)
T KOG1538|consen 664 ALEMYTDLR 672 (1081)
T ss_pred HHHHHHHHH
Confidence 666666653
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.064 Score=48.90 Aligned_cols=135 Identities=10% Similarity=0.033 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-----hHHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKE-----HYGC 553 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-----~~~~ 553 (702)
.-++++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.||.+.|..+|+...+. .-..+.. ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445677777778888888899999888654557777888888888999999999999977544 2233322 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 554 MIDLLCRAGRLSDAENMIENMPH-Q-KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
....|.-++++.+|...++++.. . .++...|+-.-...-.|+...|+...+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 44456677888999999988877 3 3455555555555567889999999999999988543
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.92 E-value=0.085 Score=42.61 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 005329 487 YAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSD 566 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 566 (702)
+.-.|..++..++..+...+ .+..-+|.++--....-+-+-..++++.+-+-+.+.|- .....++.+|.+.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34568888888988887753 34555666666666666777777888877544332221 122344555555554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005329 567 AENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 567 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
.....+..+.....+|+-+.-.+++..+...+..+|+...-++.+|.+.|+..+|-+++.++.+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33345556778889999999999999998776669999999999999999999999999999999875
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.079 Score=48.32 Aligned_cols=135 Identities=8% Similarity=-0.005 Sum_probs=98.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHH-----H
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSA-----L 452 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 452 (702)
..+.++..+...|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...++...+..-..+...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777777888888999999998877777888888888888999999999999998776543333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHH
Q 005329 453 INMYSKCGSIKEASQIFYETES---DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVT 514 (702)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 514 (702)
...|.-++++..|...|.++.. .++..-|.-.-++.-.|+..+|++.++.|.+. .|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 3345567788888888877764 35566666666666778888888888888864 444443
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.0086 Score=53.20 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=70.6
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC------------
Q 005329 163 CRVFDEM--PLRNVVSWTAIITGLVRA-----GHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSG------------ 223 (702)
Q Consensus 163 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 223 (702)
...|+.. ...|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345667777777777643 566666777888888888888888888888765421
Q ss_pred ----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCC
Q 005329 224 ----ALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGK 259 (702)
Q Consensus 224 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 259 (702)
+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345688889999999999999999988888876654
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.81 E-value=0.28 Score=46.34 Aligned_cols=59 Identities=12% Similarity=-0.013 Sum_probs=29.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHcccCcHHHHHHHHHHHHHh
Q 005329 382 IIGGYSQGGYEEEAFEYLALMRREGPRPNEFA--FASVLSVCGNMAILEQGKQIHAHVMSI 440 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (702)
....+.+.|++++|.+.|+++...-..+.... .-.+..++.+.++++.|...++...+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444556677777777776665322221111 112334445555555555555555544
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.034 Score=48.01 Aligned_cols=62 Identities=26% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+...++..+...|+++.|.+.+++++..+|-+...|..++.+|...|+..+|.++|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566778888999999999999999999999999999999999999999999999998854
No 219
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.036 Score=45.24 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHHH
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDS--VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMID 556 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~ 556 (702)
+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+ |+ ......+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 456677788889999999888887766543 356677778888889999999888887652 43 222233445
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 005329 557 LLCRAGRLSDAENMIENMP 575 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~ 575 (702)
++...|+.++|++.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6778888888888765543
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.76 E-value=0.036 Score=46.16 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch---hHHHHHHHHH
Q 005329 554 MIDLLCRAGRLSDAENMIENMPHQ-K----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG---THITLANIYA 625 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~ 625 (702)
-.....+.|++++|.+.|+.+..+ | ...+-..|+.++.+.|++++|...+++-++++|.++. ++...|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344556788999999998888761 2 3456667889999999999999999999999988764 5566666666
Q ss_pred hcCC---------------hHHHHHHHHHHHhCC
Q 005329 626 AKGR---------------WREAAEVRKMMRSKG 644 (702)
Q Consensus 626 ~~g~---------------~~~A~~~~~~~~~~~ 644 (702)
++.. ..+|...|+.+++.-
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 6655 667778887777654
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.032 Score=52.40 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC---CHHHHHHHHHhCCC-CC-CHHH
Q 005329 509 RPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAG---RLSDAENMIENMPH-QK-DDVV 582 (702)
Q Consensus 509 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~p-~~~~ 582 (702)
+-|...|..|...|...|+.+.|..-|....+ +.|+ +..+..+..++..+. ...++..+|+++.. +| +..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 44667888899999999999999999988874 3444 677777777665433 45678889998877 44 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
..-|...+...|++.+|...|+.+++..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777778889999999999999999999875543
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0014 Score=49.33 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005329 549 EHYGCMIDLLCRAGRLSDAENMIENMPH--------QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
.+|+.+...|...|++++|+..|++... .|+ ..++..++..+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666666666666666665543 122 446677777788888888888888877764
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=1.2 Score=47.37 Aligned_cols=326 Identities=12% Similarity=0.098 Sum_probs=171.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCc---hHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 005329 279 TTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLAR---IQWGEQLHAHVLRLGLVDSLSVANSIMAMY 355 (702)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (702)
..+|.-+...+.+..|+++-..+...-..- ...|......+.+..+ -+.+..+-+.+... . .+...|..+.+-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 345666667777777777766664321111 4555555555554432 22222222222111 2 2233455555555
Q ss_pred HhcCCHHHHHHHHhcCCCC--------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcH
Q 005329 356 SKCGQLTSTSIVFHGMIRR--------DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAIL 427 (702)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 427 (702)
..+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++-.+..+- +...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhc
Confidence 6778888887777654332 11223344444555666666666655554321 111111111 122
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh--hC-----CCCCHHHHHHHHHHHHHcCC--------
Q 005329 428 EQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFY--ET-----ESDDIVSWTAMINGYAEHGY-------- 492 (702)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~-------- 492 (702)
..|..++....+..-... +-+.| .+++...+...|. .. .++-.........++.+...
T Consensus 589 p~a~~lY~~~~r~~~~~~------l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRAT------LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhhchhh------hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 333444443333211100 11111 1222222222111 10 01111122223333333322
Q ss_pred --hHHHHHHHHHch-hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005329 493 --SQEAIHLFEKVP-MVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAEN 569 (702)
Q Consensus 493 --~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 569 (702)
..+-+++.+.+. +.|..-...+.+--+.-+...|...+|.++-.+.. -||...|..=+.+++..++|++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 111222333332 12333444556666667778888999988877663 5788888888899999999998887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 570 MIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 570 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+-+... ++.-|.-...+|.+.|+.++|..++-+.-.+ .-.+.+|.+.|++.+|.+.--+
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 777655 3567777889999999999998887654221 1678889999999999886543
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.013 Score=56.68 Aligned_cols=256 Identities=15% Similarity=0.096 Sum_probs=136.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCchHHHHHHHHHHH--H--hCCC-CchHHHHHHHHHH
Q 005329 284 SYVQMGEEENAFDAFVRMQESDV---KPNEYTFAAIISASANLARIQWGEQLHAHVL--R--LGLV-DSLSVANSIMAMY 355 (702)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~~ 355 (702)
-+|+.|+....+.+|+...+.|- ..=+..|..|-++|.-.+++++|.+++..=+ . .|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 45667777777777777766652 1122345555566666667777776654311 1 1110 0112222344445
Q ss_pred HhcCCHHHHHHHHhcCC-------CC--ChhhHHHHHHHHHcCCC--------------------hHHHHHHHHHHH---
Q 005329 356 SKCGQLTSTSIVFHGMI-------RR--DIISWSTIIGGYSQGGY--------------------EEEAFEYLALMR--- 403 (702)
Q Consensus 356 ~~~g~~~~a~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~--- 403 (702)
.-.|.+++|+-+..+-. .+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666654432211 11 22344445555554442 223333333211
Q ss_pred -HCCCC-CCHHHHHHHHHHHcccCcHHHHHHHHHHHHH----hCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 005329 404 -REGPR-PNEFAFASVLSVCGNMAILEQGKQIHAHVMS----IGLER-TAMIKSALINMYSKCGSIKEASQIFYETE--- 473 (702)
Q Consensus 404 -~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 473 (702)
+.|-. .--..|..+-+.|.-.|+++.|...++.-.. .|-.. ....+..+.+++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 1112455555556667788888877655432 23222 23455667778888888888888877532
Q ss_pred ----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHchh----CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005329 474 ----SD--DIVSWTAMINGYAEHGYSQEAIHLFEKVPM----VG-LRPDSVTFMGVLTACSHAGLVDLGFHYFNLMS 539 (702)
Q Consensus 474 ----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 539 (702)
.. ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22 233455677777777788888877755321 11 11233567778888888888888877665543
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.56 E-value=0.02 Score=45.88 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCc---hhHHHHHHHHHhcCC
Q 005329 556 DLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH-PSCA---GTHITLANIYAAKGR 629 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 629 (702)
-++...|+.+.|++.|.+... +.....||.-..++.-+|+.++|..-+++++++. |... ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888887766 4567788888889999999999999999998875 4432 356677888888899
Q ss_pred hHHHHHHHHHHHhCCC
Q 005329 630 WREAAEVRKMMRSKGV 645 (702)
Q Consensus 630 ~~~A~~~~~~~~~~~~ 645 (702)
-+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999888888777663
No 226
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.54 E-value=0.03 Score=49.87 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc----------------CcHHHHH
Q 005329 373 RRDIISWSTIIGGYSQ-----GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNM----------------AILEQGK 431 (702)
Q Consensus 373 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 431 (702)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455556666665553 466777777888888888888888888888876542 2356677
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005329 432 QIHAHVMSIGLERTAMIKSALINMYSKCGS 461 (702)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 461 (702)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876554
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.40 E-value=0.86 Score=42.73 Aligned_cols=195 Identities=21% Similarity=0.160 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 005329 446 AMIKSALINMYSKCGSIKEASQIFYETE-----SDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT 520 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 520 (702)
...+......+...+++..+...+.... ......+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444556666666777777766666543 2344556666667777777888888887777543222 122222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhhCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-C-CHHHHHHHHHHHHh
Q 005329 521 -ACSHAGLVDLGFHYFNLMSDKYGFVP----SKEHYGCMIDLLCRAGRLSDAENMIENMPH-Q-K-DDVVWSTLLRACMV 592 (702)
Q Consensus 521 -~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p-~~~~~~~l~~~~~~ 592 (702)
.+...|+++.|...+..... ..| ....+......+...++.+.|...+..... . . ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888743 233 233344444446677888888888888776 2 3 35677788888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 593 QGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.++++.|...+..++...|.....+..++..+...|.++++...+++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999888888767777777777777777888888887776543
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.026 Score=52.32 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=43.7
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHH
Q 005329 524 HAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH-----QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~ 597 (702)
..|++..|.+.|...+++|.-.+ ....+-.|..++...|++++|..+|..+.+ +..+..+--|+....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666554421111 133344455555555555555555544433 112344444444455555555
Q ss_pred HHHHHHHHHHHhCCCCc
Q 005329 598 CGRHTAEKILELHPSCA 614 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~ 614 (702)
.|..+|+++.+..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 55555555555555443
No 229
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.024 Score=49.25 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 005329 555 IDLLCRAGRLSDAENMIENMPH-QK------DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAK 627 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 627 (702)
.+-+.+.|++++|..-|..+.. .| ....|..-..+..+.++++.|+.-..++++++|....+....+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3456678888888888887766 22 2345556666778999999999999999999998888888999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 005329 628 GRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 628 g~~~~A~~~~~~~~~~~~ 645 (702)
.++++|++-|+++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 999999999999887544
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.25 E-value=0.62 Score=42.73 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=23.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHcccCcHHHHHHHHHHHHH
Q 005329 383 IGGYSQGGYEEEAFEYLALMRREGPRP--NEFAFASVLSVCGNMAILEQGKQIHAHVMS 439 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (702)
...+...|++.+|.+.|+.+...-... -....-.+..++.+.|+++.|...++..++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555432111 111222333444444555555544444443
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.22 E-value=1.9 Score=44.87 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=121.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETESDD---IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
....|+..+..-.+.|+.+.+.-.|++..-|- ...|-..+.-....|+.+-|...+....+-..+-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566666677777888888888888776542 234444444444558888888877666554333333332222233
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCCHHHHHHHHH-----HHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAE---NMIENMPH-QKDDVVWSTLLR-----ACM 591 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~p~~~~~~~l~~-----~~~ 591 (702)
+...|+++.|..+++.+.+. + |+ ...-..-+....+.|..+.+. +++..... +-+......+.. .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999876 3 66 444444566677888888888 44444433 222222222222 244
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005329 592 VQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
..++.+.|..++.++.+..|.+...|..++.....++...+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 67899999999999999999999999999998887764433
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.18 E-value=0.11 Score=49.75 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchh-CCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC--CC--Chhh
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPM-VGLRPDS---VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGF--VP--SKEH 550 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p--~~~~ 550 (702)
.|..+..++-+.-++.+++.+-+.-.. .|..|.. .....+..++.-.+.++++++.|+.+.+--.- +| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555555555443221 1222211 22333555556666677777777765432111 11 1456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CC
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH-------QK-----DDVVWSTLLRACMVQGDVNCGRHTAEKILELH------PS 612 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~ 612 (702)
+..|...|.+..++++|.-+..++.+ +. ...+...+..++...|....|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777777666554432 11 11223344556677777777777777665542 33
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 613 CAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
.......++++|...|+.+.|..-|+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3445566777777777777776655544
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.048 Score=50.60 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred hcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhcCChH
Q 005329 560 RAGRLSDAENMIENMPHQ-K----DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC---AGTHITLANIYAAKGRWR 631 (702)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~ 631 (702)
+.|++.+|...|....++ | .+..+--|+.++...|+++.|..+|..+....|++ ++.+.-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 445566666666555441 1 12223336666666666666666666666655444 345556666666666666
Q ss_pred HHHHHHHHHHhCCC
Q 005329 632 EAAEVRKMMRSKGV 645 (702)
Q Consensus 632 ~A~~~~~~~~~~~~ 645 (702)
+|...|+++.++-+
T Consensus 233 ~A~atl~qv~k~YP 246 (262)
T COG1729 233 EACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665543
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=2.2 Score=44.91 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=22.6
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005329 159 IELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEM 200 (702)
Q Consensus 159 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 200 (702)
+++|.+..+. .|.+..|..|.......-.++-|...|-+.
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 3444444443 456667777776665555556565555544
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.032 Score=55.82 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDD----VVWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
...++.+..+|.+.|++++|+..|++... .|+. .+|..+..+|...|+.++|++.+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666666666666666666666554 4442 23666666666666666666666666665
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.89 E-value=0.12 Score=42.74 Aligned_cols=96 Identities=16% Similarity=0.244 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc
Q 005329 446 AMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA 525 (702)
Q Consensus 446 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 525 (702)
..++..++.++++.|+++....+++..-..++. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666777777766666666544321111 0000000 122334678888899999999999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 005329 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDL 557 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 557 (702)
|++..|.++.+...+.|+++.+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999998888888788888877753
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.85 E-value=0.18 Score=43.21 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=59.0
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGR 563 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 563 (702)
.--+...|++++|..+|+-+...+ +-|..-+..|..+|-..+.++.|+..|.....- + .-|+..+-....+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 334556778888888777766532 223334455666666777788888877766432 1 1234444456777777888
Q ss_pred HHHHHHHHHhCCCCCCH
Q 005329 564 LSDAENMIENMPHQKDD 580 (702)
Q Consensus 564 ~~~A~~~~~~~~~~p~~ 580 (702)
.+.|...|+....+|..
T Consensus 121 ~~~A~~~f~~a~~~~~~ 137 (165)
T PRK15331 121 AAKARQCFELVNERTED 137 (165)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 88888877777665543
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.83 E-value=0.028 Score=33.87 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888764
No 239
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.78 E-value=3.9 Score=44.78 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005329 351 IMAMYSKCGQLTSTSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRRE 405 (702)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (702)
-+..+.+.+++.....++.. ...+...-.....+....|+.++|......+-..
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 33344455566655553322 2234444444555566666666565555554333
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=0.49 Score=49.63 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=101.9
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhHHhhCCCCChhhHH
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVG-LRPDS-----VTFMGVLTACS----HAGLVDLGFHYFNLMSDKYGFVPSKEHYG 552 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 552 (702)
+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++ .....+.|.++++.+.++ -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444555566666555544321 11111 12333333332 245678888999888765 57755554
Q ss_pred H-HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH-HHHHHH
Q 005329 553 C-MIDLLCRAGRLSDAENMIENMPH------QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI-TLANIY 624 (702)
Q Consensus 553 ~-l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~ 624 (702)
. -.+.+...|+.++|++.|+++.. +-....+-.++..+....++++|.+.+.++.+.+.-+...|. ..+-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3 35667788999999999997654 123445566777888899999999999999997765555444 456667
Q ss_pred HhcCCh-------HHHHHHHHHHHh
Q 005329 625 AAKGRW-------REAAEVRKMMRS 642 (702)
Q Consensus 625 ~~~g~~-------~~A~~~~~~~~~ 642 (702)
...|+. ++|.+++.++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 788888 888888887765
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.75 E-value=0.023 Score=34.32 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.73 E-value=4.8 Score=45.49 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMID 556 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~ 556 (702)
.|.+...-+.....+++|.-.|+..-+ ..-.+.+|..+|+|++|..+-.++.. .-+ ..+-..|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHH
Confidence 344444444555666666666654321 11245666677777777776665531 111 222256677
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005329 557 LLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKIL 607 (702)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 607 (702)
-+...+++-+|-++..+....|.. ....+++...+++|.++....-
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 777778887777777777654432 2334455566777776666543
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=95.72 E-value=0.44 Score=48.13 Aligned_cols=143 Identities=9% Similarity=0.102 Sum_probs=99.8
Q ss_pred hHHHHHHHHHchh-CCCCCCH-HHHHHHHHHHhc---------cCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHh
Q 005329 493 SQEAIHLFEKVPM-VGLRPDS-VTFMGVLTACSH---------AGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCR 560 (702)
Q Consensus 493 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 560 (702)
.+.|+.+|.+... +.+.|+. ..|..+..++.. .....+|.++-+... .+.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4567777877772 2245654 344444433321 234556677776666 3455 47777888888888
Q ss_pred cCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH--HHhcCChHHHHHH
Q 005329 561 AGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANI--YAAKGRWREAAEV 636 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~ 636 (702)
.|+++.|...|+++.. .|+ ..+|......+.-.|+.++|.+.++++++++|.....-..-.++ |+. ...++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 8999999999999887 554 66888888888899999999999999999999876655544444 544 456777776
Q ss_pred HHH
Q 005329 637 RKM 639 (702)
Q Consensus 637 ~~~ 639 (702)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.66 E-value=2.7 Score=42.02 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhH-HHH
Q 005329 477 IVSWTAMINGYAEHGYSQEAIHLFEKVPMVG-LRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHY-GCM 554 (702)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l 554 (702)
...|...+..-.+..-.+.|..+|-++.+.| +.++...+++++.-++ .|+...|..+|+.-... -||...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4466677777777777888888888888877 5567777777777554 57778888888865544 3554443 455
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 555 IDLLCRAGRLSDAENMIENMPH----QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
+..+.+.++-+.|..+|+.... ..-...|..++.--..-|+...+..+-+++.+..|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677788888888888886654 1235678888888888899988888888888888854
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=1.5 Score=39.99 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCchh
Q 005329 549 EHYGCMIDLLCRAGRLSDAENMIENMPH-------QKDD-VVWSTLLRACMVQGDVNCGRHTAEKILELH----PSCAGT 616 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~ 616 (702)
..+....+.|++...+++|-..+.+-.. -|+. ..+-..+-.+....|+..|+.+++...+.. |++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 3455556677777777777666655433 1222 234445555666778888888888866643 666667
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 005329 617 HITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~ 637 (702)
...|...| ..|+.+++..++
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77776655 456666665543
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=1.3 Score=41.77 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=16.6
Q ss_pred HhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 608 ELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 608 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
..+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 230 AADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555555554443333
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=1.3 Score=44.00 Aligned_cols=164 Identities=11% Similarity=-0.000 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhhCCCCChhhHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVG---LRPDSVTFMGVLTACSH---AGLVDLGFHYFNLMSDKYGFVPSKEHYG 552 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 552 (702)
+...++-+|....+++..+++.+.+...- +.-....--.+.-++.+ .|+.++|++++..+... .-.+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33456667999999999999999998631 11122222234556666 89999999999996555 5567788988
Q ss_pred HHHHHHH----h-----cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHH----HHHHHH----HHHHHhC----
Q 005329 553 CMIDLLC----R-----AGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVN----CGRHTA----EKILELH---- 610 (702)
Q Consensus 553 ~l~~~~~----~-----~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~---- 610 (702)
.++..|- . ....++|...|.+.-. +|+...--.++..+...|... +..++- ..+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8877653 2 2347788888888765 555433333333333444322 222222 1111111
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 611 PSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
-.+-..+.+++.+..-.|++++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 224455667888888999999999999999875
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.36 Score=45.85 Aligned_cols=148 Identities=14% Similarity=0.000 Sum_probs=68.2
Q ss_pred cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHH----HHHHHHHhcCCHH
Q 005329 490 HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYG----CMIDLLCRAGRLS 565 (702)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~ 565 (702)
.|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++..+ ..|+...|. .+.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34455555555555443 3444444444455555555555555555555432 233332222 2223344555555
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 566 DAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC----AGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 566 ~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+|++.-++..+ +-|...-.++...+...|++.++.+..++--..-.+. ...|.+.+-.+.+.+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555554 2233333444444455555555555544432221111 12334444445555555555555554
Q ss_pred H
Q 005329 640 M 640 (702)
Q Consensus 640 ~ 640 (702)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.35 E-value=0.14 Score=44.04 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhhH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSD----KYGFVPSKEHY 551 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 551 (702)
+...++..+...|++++|..+++++.... +-|...|..+|.++...|+...|.+.|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556677778888888888888888753 44677888888888888888888888877643 35888876554
No 250
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.33 E-value=1.8 Score=38.68 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005329 477 IVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD-SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++..|.+-+-..-+. .|+...-...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHHH
Confidence 456777777777888888888888887764 332 223333233445667888887766555433 33321111112
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------chhHHHHHHHHHhcC
Q 005329 556 DLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC-------AGTHITLANIYAAKG 628 (702)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 628 (702)
-.-...-+..+|..-+.+--.+-+..-|...+..+.- |+.. .+.+++++.+-..++ .++|.-|+.-+...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2222344566666544332223444455444433321 2221 123444444333332 458888999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 005329 629 RWREAAEVRKMMRSKG 644 (702)
Q Consensus 629 ~~~~A~~~~~~~~~~~ 644 (702)
..++|..+|+-.+...
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998877643
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.28 E-value=0.048 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 614 AGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
|..+..++.+|.+.|++++|+++++++.+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999998853
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.25 E-value=2.6 Score=39.32 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=126.0
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HHHHHHHHH-HH
Q 005329 413 AFASVLSVCGNMAILEQGKQIHAHVMSI-GLERTAMIKSALINMYSKCGSIKEASQIFYETES--DD-IVSWTAMIN-GY 487 (702)
Q Consensus 413 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~ 487 (702)
.+......+...+....+...+...... ........+......+...++...+...+..... ++ ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333444444444444444444444332 2223333444455555566666677766665543 11 122222333 67
Q ss_pred HHcCChHHHHHHHHHchhCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhc
Q 005329 488 AEHGYSQEAIHLFEKVPMVGLRP----DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMIDLLCRA 561 (702)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 561 (702)
...|+++.|...+++... ..| ....+......+...++.+.+...+...... .++ ...+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHc
Confidence 888999999999988855 333 2234444444467788999999999988754 333 67788888889999
Q ss_pred CCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 562 GRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 562 g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
++++.|...+..... .|. ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999988877 444 456666666666777899999999999999986
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.21 E-value=2.2 Score=43.45 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCCC
Q 005329 597 NCGRHTAEKILELHPS 612 (702)
Q Consensus 597 ~~A~~~~~~~~~~~p~ 612 (702)
..|.+.+.++++.+|-
T Consensus 363 ~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3467888898888874
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.16 E-value=0.081 Score=42.57 Aligned_cols=57 Identities=19% Similarity=0.060 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..+....|+.+.|++.|.+++.+-|.+++.|++-+.++.-+|+.++|++-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 445778999999999999999999999999999999999999999999999998774
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.02 E-value=3 Score=38.74 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 585 TLLRACMVQGDVNCGRHTAEKILELHPSCAG---THITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 585 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.++.-|.+.|.+..|..-++.+++..|+.+. .+..+..+|...|..++|...-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3566688888888888888888888766544 555667778888988888777655543
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.02 E-value=3 Score=38.73 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCC-CCCCHHHHH
Q 005329 444 RTAMIKSALINMYSKCGSIKEASQIFYETESD------DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVG-LRPDSVTFM 516 (702)
Q Consensus 444 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~ 516 (702)
|-...|+. +..-.+.|++++|.+.|+.+... ...+.-.++-++.+.+++++|+..+++....- -.|| .-|.
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33444543 44556789999999999998742 23455667778889999999999999988642 2233 3444
Q ss_pred HHHHHHhcc-------CcH---HHHHHHHHHhHHhhC---CCCChhh------------HHHHHHHHHhcCCHHHHHHHH
Q 005329 517 GVLTACSHA-------GLV---DLGFHYFNLMSDKYG---FVPSKEH------------YGCMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 517 ~ll~~~~~~-------g~~---~~A~~~~~~~~~~~~---~~p~~~~------------~~~l~~~~~~~g~~~~A~~~~ 571 (702)
..|.+++.- .|. ..|..-|+.++.++. ..||... =..+.+.|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 445544421 233 345555666665531 1122111 013456788999999999999
Q ss_pred HhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 572 ENMPHQ-----KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 572 ~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
+++.+. -....+-.+..+|...|-.++|...-+-+-...|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 998872 2344666788889999999999988776666667665
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.98 E-value=3.3 Score=41.95 Aligned_cols=150 Identities=9% Similarity=-0.006 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hh
Q 005329 475 DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP---DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS--KE 549 (702)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 549 (702)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-....-..|+..+|+..++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345677888888888899999988888877643211 2233334445556678888888888877652 11111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 550 HYGCMIDLLCRAGRLSDAENM-IENMPHQKDDVVWSTLLRACMVQ------GDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
....+...+.. ..+..... ......+.....+..++.-+... ++.+.+...|+++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000001122333344444444 78999999999999999999999988887
Q ss_pred HHHhc
Q 005329 623 IYAAK 627 (702)
Q Consensus 623 ~~~~~ 627 (702)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76654
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.26 Score=46.72 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=93.2
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH----HHHHHHHhcCCHH
Q 005329 524 HAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWS----TLLRACMVQGDVN 597 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~----~l~~~~~~~g~~~ 597 (702)
-.|+..+|-..|+++.++ .+.|...+...=+++.-.|+.+.-...++++.- .|+.+.|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888889998875 345566777777888889999888888888765 45554333 2333455889999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 598 CGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
+|++..+++++++|.+......++.++...|+..|+.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999887643
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.86 E-value=0.7 Score=38.66 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=66.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 005329 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPD---SVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLL 558 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 558 (702)
.-.....+.|++++|.+.|+.+... .+.. ...-..++.++.+.++++.|...+++.++.+.-.|+ ..|.....++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHH
Confidence 3344455677888888888777754 2222 235556777777888888888888877754222222 2344444444
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 559 CRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
..-...+. .+..+.. .=...+....|...|++++...|++..
T Consensus 93 ~~~~~~~~---~~~~~~~------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 93 SYYEQDEG---SLQSFFR------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHhhh---HHhhhcc------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 33222221 1111111 001122356888899999999997654
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=1.4 Score=41.62 Aligned_cols=169 Identities=13% Similarity=0.047 Sum_probs=117.5
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005329 463 KEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKY 542 (702)
Q Consensus 463 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 542 (702)
+...+++++...+....--.-.......|++.+|..+|+...+.. +-+...-..+..++...|+.+.|..++..+-..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 345556666665533322333445678899999999999988753 334556677888999999999999999987533
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCchhHHH
Q 005329 543 GFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELH--PSCAGTHIT 619 (702)
Q Consensus 543 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 619 (702)
.-.........-+..+.+.....+...+-++.-..| |...-..+...+...|+.+.|.+.+-.++..+ -++...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111112222233556666666666666666666656 67777888999999999999999998888865 557778888
Q ss_pred HHHHHHhcCChHHH
Q 005329 620 LANIYAAKGRWREA 633 (702)
Q Consensus 620 l~~~~~~~g~~~~A 633 (702)
|+.++.--|.-+.+
T Consensus 278 lle~f~~~g~~Dp~ 291 (304)
T COG3118 278 LLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHhcCCCCHH
Confidence 88888887755543
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.74 E-value=5.1 Score=40.13 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHH-HHHHHH
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYG-FVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVW-STLLRA 589 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~-~~l~~~ 589 (702)
..|...+.+..+..-++.|..+|-++.+. + +.+++..+++++..++ +|+..-|..+|+--.. -||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46777888888888899999999999766 6 6677889999998765 6888899999987665 4665554 456666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSC--AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..-++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+=+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778899999999999777643222 56777777777777888777665555543
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.52 E-value=2.6 Score=35.79 Aligned_cols=123 Identities=7% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc
Q 005329 482 AMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRA 561 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 561 (702)
.++..+...+.+.....+++.+...+ ..+...++.++..|++.+ .....+.++. .++.......++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 34455555556666666666665554 244445555665555432 2333333331 11222233345555555
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005329 562 GRLSDAENMIENMPHQKDDVVWSTLLRACMVQ-GDVNCGRHTAEKILELHPSCAGTHITLANIY 624 (702)
Q Consensus 562 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 624 (702)
+.++++.-++.++.. +...+..+... ++.+.|.+.+++ +.++..|..++..+
T Consensus 83 ~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 83 KLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred CcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 666666666655542 11222222223 556666665554 23444555554443
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=1.4 Score=45.58 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=96.9
Q ss_pred HHHHhCCChHHHHHHHH--HHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCC
Q 005329 182 TGLVRAGHNKEGLIYFA--EMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGK 259 (702)
Q Consensus 182 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 259 (702)
....-.++++.+.+..+ ++.. .++ ....+.+++.+-+.|..+.|.++-..- ..-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 44556678888766665 2211 122 344677777788888888887774322 223455677899
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHh
Q 005329 260 LDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRL 339 (702)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 339 (702)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999998887765 566899999999999999999999888653 455666677778877777777766665
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHhc
Q 005329 340 GLVDSLSVANSIMAMYSKCGQLTSTSIVFHG 370 (702)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (702)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 52 34444455556676666555543
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=10 Score=41.42 Aligned_cols=149 Identities=14% Similarity=0.050 Sum_probs=84.7
Q ss_pred chhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHH----HHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 005329 41 TPEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLIS----GYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALK 116 (702)
Q Consensus 41 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 116 (702)
....-.-+..+.+..-+.-|..+-..-.- +......+.. -+.+.|++++|...|-+-. |.-..+ .+++
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI---~~le~s----~Vi~ 405 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI---GFLEPS----EVIK 405 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc---ccCChH----HHHH
Confidence 33445667788888888888887765433 3333333333 3456888888887777665 322221 2344
Q ss_pred HhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc-hHHHHHHHHHhCCChHHHHH
Q 005329 117 ACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVV-SWTAIITGLVRAGHNKEGLI 195 (702)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~ 195 (702)
.+........-...++.+.+.|+. +...-+.|+.+|.+.++.++..+..+........ -....+..+.+.+-.++|.-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 444445555556667777777753 3334456778888888888777777665521111 13334444444444444444
Q ss_pred HHH
Q 005329 196 YFA 198 (702)
Q Consensus 196 ~~~ 198 (702)
+-.
T Consensus 485 LA~ 487 (933)
T KOG2114|consen 485 LAT 487 (933)
T ss_pred HHH
Confidence 333
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=11 Score=41.16 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=81.6
Q ss_pred HHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHH----HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 005329 147 SALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAII----TGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADS 222 (702)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 222 (702)
..-+..+.+..-++-|..+-+.-.. +..+-..+. +.+.+.|++++|..-|-+-... +.| ..+++-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 3445555666667777766655332 222222233 3345678888888777765432 222 2345556666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcc--hHHHHHHHHHhcCChhHHHHH
Q 005329 223 GALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVI--SWTTIITSYVQMGEEENAFDA 297 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~ 297 (702)
..+..-..+++.+.+.|+... ..-+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|.-+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHH
Confidence 666777777888888875433 3346778888888888887777766552 111 133444444444444444443
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.03 E-value=2 Score=36.81 Aligned_cols=87 Identities=17% Similarity=0.060 Sum_probs=58.3
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPSK-EHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWSTLLRACMVQGDVNCG 599 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A 599 (702)
-...++.+.+..++..+. -+.|.. ..-..-+..+.+.|+|.+|..+|+++.. .|....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 346678888888888886 457763 3333345667888999999999999877 45555556666666655544444
Q ss_pred HHHHHHHHHhCC
Q 005329 600 RHTAEKILELHP 611 (702)
Q Consensus 600 ~~~~~~~~~~~p 611 (702)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 555566666655
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.01 E-value=0.11 Score=31.86 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 616 THITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888899999988888854
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.00 E-value=0.91 Score=46.04 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=82.3
Q ss_pred HcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005329 489 EHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAE 568 (702)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 568 (702)
+..++..-++.-++..+ +.||..+...++ +-.......++.++|++..+. + ...+..- ......|.. .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---h
Confidence 33445555555555554 456654332222 223345577888888877654 1 0011000 000011111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005329 569 NMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPS--CAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 569 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
+.+..-...|-..+-..|...+.+.|+.++|++.++++++..|. +-.+...|+.++...+++.++..++.+-.+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111011233444456777778888888888888888877764 4567888888888888888888888876554333
Q ss_pred cCC
Q 005329 647 KEP 649 (702)
Q Consensus 647 ~~~ 649 (702)
++.
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 333
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.91 E-value=0.44 Score=44.15 Aligned_cols=110 Identities=13% Similarity=0.036 Sum_probs=79.1
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC----------
Q 005329 161 LGCRVFDEMP--LRNVVSWTAIITGLVRA-----GHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSG---------- 223 (702)
Q Consensus 161 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 223 (702)
..++.|.... ++|..+|-+.+..+... +..+=....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566655 56777888888777543 556667778889999999999999999998765432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCCh-HHHHHHHhcc
Q 005329 224 ------ALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKL-DYSLRLFERM 270 (702)
Q Consensus 224 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 270 (702)
+-+-+..++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2244778889999999999999888888888877643 3333333333
No 270
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.85 E-value=12 Score=41.04 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHHhC---CCCchhHH------HHHHHHHhcCChHHHHHHHHHHH
Q 005329 593 QGDVNCGRHTAEKILELH---PSCAGTHI------TLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~---p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.|+..+.......+...- |+...... .+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666665555543 33233222 45566788899999988877654
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.85 E-value=0.14 Score=30.80 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
+|..++..+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666677777777777777777777777763
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.65 E-value=0.53 Score=38.90 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhcc
Q 005329 42 PEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALN 121 (702)
Q Consensus 42 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 121 (702)
.++..++-++++.|+++....+.+..=..+ +.+-...+. ....+...|+..++.+++.+++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD----------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc----------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 455666777777777777666665421000 000000000 111223445555555555555555
Q ss_pred CCchhhhHHHHHHHHh-cCCCchhHHHHHHH
Q 005329 122 VNVNYGESLHGYTVKT-GFVNSVFVGSALLD 151 (702)
Q Consensus 122 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 151 (702)
+++..|.++.+...+. +++.+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5555555555554432 34444555555554
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.65 E-value=0.73 Score=42.81 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=75.8
Q ss_pred HHHHHhcCC--CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC-----------
Q 005329 364 TSIVFHGMI--RRDIISWSTIIGGYSQ-----GGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMA----------- 425 (702)
Q Consensus 364 a~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 425 (702)
.++.|..+. ++|-.+|-..+..|.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555554 5566777777777654 3566777778888999999999999999998875532
Q ss_pred -----cHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005329 426 -----ILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSI 462 (702)
Q Consensus 426 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 462 (702)
.-+-+.+++++|..+|+-||..+-..|++++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3455778999999999999999999999999887753
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.59 E-value=3.9 Score=43.03 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHchhCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhh-CC-CCChhhHHHHHHHHHhcCCHHHHH
Q 005329 492 YSQEAIHLFEKVPMVGLRPDSVTFMGV-LTACSHAGLVDLGFHYFNLMSDKY-GF-VPSKEHYGCMIDLLCRAGRLSDAE 568 (702)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 568 (702)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+...... .. +.....+.-++..+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555566555542 3544433322 223345566666666666443210 00 011233344555566666666666
Q ss_pred HHHHhCCC-CC-CHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 005329 569 NMIENMPH-QK-DDVVWSTLLRA-CMVQGDV-------NCGRHTAEKILE 608 (702)
Q Consensus 569 ~~~~~~~~-~p-~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 608 (702)
..|..+.+ .. +...|.-+..+ +...|+. ++|.+.++++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66666655 12 22223222222 2245555 555555555544
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.56 E-value=0.15 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
+|..|+..|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888999999999999999996654
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.44 E-value=3.4 Score=42.85 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=96.0
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhH
Q 005329 82 YVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIEL 161 (702)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 161 (702)
..-+++++++.+....-.--+.+ +....+.+++.+.+.|-.+.|.++-. |+. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 34567777766665511111111 24456677777777777777766532 222 34455678899999
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 005329 162 GCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFD 241 (702)
Q Consensus 162 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 241 (702)
|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.+...|+.+.-.++.+.....|-
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 999988876 566899999999999999999999998643 56666677778888887777777766651
Q ss_pred CchhHHHHHHHHhhhCCChHHHHHHHhc
Q 005329 242 VVSFVANSLATMYSKCGKLDYSLRLFER 269 (702)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (702)
++....++.-.|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 24444444455666666655543
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.28 E-value=0.71 Score=39.44 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHhCCC-CCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCCh
Q 005329 559 CRAGRLSDAENMIENMPH-QKDDVVWST-LLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRW 630 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~-~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 630 (702)
.+.++.+++..+++.+.. +|....... -...+...|++.+|+++++.+.+..|..+..--.++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 455677777777766655 554443332 344456777777777777777666666666666666666666654
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=4.9 Score=35.57 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=69.2
Q ss_pred HHHHHHHHchhCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhH-----HHHHHHHHhcCCHHHH
Q 005329 495 EAIHLFEKVPMVGLRPDSVTFMG--VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHY-----GCMIDLLCRAGRLSDA 567 (702)
Q Consensus 495 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 567 (702)
+.....+++....-+....++.. +...+...++++.|..-++..... |....+ -.|.+.....|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555556654321112222222 344567788888888888766532 222222 2455667788888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 568 ENMIENMPHQK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 568 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
+..++....+. .......-++.+...|+.++|...|+++++.++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 88888776522 122334456678888888888888888888764
No 279
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.21 E-value=13 Score=39.11 Aligned_cols=129 Identities=14% Similarity=0.003 Sum_probs=88.8
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHH
Q 005329 71 DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPF-ILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSAL 149 (702)
Q Consensus 71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (702)
+-..|+.+|.---.....+.+..++..++.. -|--. .|.....-=.+.|..+.+.++|++-+. |++.++..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 4445777776544455556677777777744 34433 445555555577888888899988775 456777777776
Q ss_pred HHhhh-cCCChhHHHHHhccCC------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005329 150 LDMYT-KLGKIELGCRVFDEMP------LRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRS 203 (702)
Q Consensus 150 i~~~~-~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 203 (702)
...+. ..|+.+...+.|+... -.+...|...|..-..++++.....+|++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66554 4577777777777654 235567888888888888999999999998774
No 280
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.16 E-value=0.31 Score=46.34 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH
Q 005329 521 ACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~ 597 (702)
-|.++|++++|+..|.... .+.| ++.++..-..+|.+..++..|..-.+.+.. +.-...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3555666666666666544 3345 455555555566666666655555444433 122334555555555667788
Q ss_pred HHHHHHHHHHHhCCCCchhH
Q 005329 598 CGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~~~~ 617 (702)
+|.+-++.++++.|++.+.-
T Consensus 183 EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHhhCcccHHHH
Confidence 88888888888888765433
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.84 E-value=1.6 Score=38.43 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=60.9
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhc
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS------KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQ 593 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~ 593 (702)
+...|++++|..-|..++.. -|. ...|..-..++.+.+.++.|+.-..+... .|. ..++..-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44556666666666665543 222 22333344566677777777776666655 332 22333345567778
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
.+++.|++-|+++++.+|.....-...+.+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 889999999999999999776555544444
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.65 E-value=0.87 Score=38.16 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 592 VQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
..++.+.++.++..+.-+.|+.++.-..-++++...|+|.||..++..+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35555555555555555555555555555555555555555555555554433
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.60 E-value=0.31 Score=46.33 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005329 555 IDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
.+-|.++|.+++|++.|.+... .| +++++..-..+|.+...+..|+.-.+.++.++......|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4568899999999999988776 56 888888889999999999999999999999988778888888888888888888
Q ss_pred HHHHHHHHHh
Q 005329 633 AAEVRKMMRS 642 (702)
Q Consensus 633 A~~~~~~~~~ 642 (702)
|.+-.+...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8877766654
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.44 E-value=0.2 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 614 AGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+..+..++.+|...|++++|++.+++..+..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999987643
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=4.2 Score=35.96 Aligned_cols=90 Identities=21% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005329 554 MIDLLCRAGRLSDAENMIENMPHQKDDVVWS-----TLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+...+...|++++|..-++.....|....+. .|.......|+++.|...+....+.+= .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 3566889999999999999887755544443 355567789999999988876544221 2334567799999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 005329 629 RWREAAEVRKMMRSKG 644 (702)
Q Consensus 629 ~~~~A~~~~~~~~~~~ 644 (702)
+.++|+..|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998764
No 286
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.02 E-value=6.9 Score=33.20 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 005329 177 WTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADS 222 (702)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 222 (702)
...++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455556655566666666666665554 24455555566555543
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.94 E-value=27 Score=39.94 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHH--HHHHHHHHhcc
Q 005329 448 IKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVT--FMGVLTACSHA 525 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 525 (702)
.|.+..+.+...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+..++.. .-+... -..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 334444445556777777766665432 12245677778888888888777652 223322 24567777788
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 526 GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
++.-+|-++..+...+ ..--+..|++...|++|..+......
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 8888888877766532 23446677888889999988877663
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.87 E-value=0.27 Score=29.51 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
..|..+|.+|...|++++|+..++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999988743
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.74 E-value=7.7 Score=33.80 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=83.4
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCC
Q 005329 194 LIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTR 273 (702)
Q Consensus 194 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 273 (702)
.+.++.+.+.+++|+...+..+++.+.+.|++... ..++..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 35566667788899999999999999988886544 444555655665544444333322 223333333333322
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHh
Q 005329 274 DVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRL 339 (702)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 339 (702)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...--.+++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2235677788888999999999988775332 2233355667777777666555555555543
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.42 E-value=26 Score=38.59 Aligned_cols=93 Identities=8% Similarity=-0.117 Sum_probs=58.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHhcCChH
Q 005329 555 IDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH---PSCAGTHITLANIYAAKGRWR 631 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 631 (702)
+..+...|...+|...+..+....+......+.......|.++.++....+....+ -..+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 45567789999999888887776666666777777778899888888776554321 112334555666666655666
Q ss_pred HHHHHHHHHHhCCCcc
Q 005329 632 EAAEVRKMMRSKGVIK 647 (702)
Q Consensus 632 ~A~~~~~~~~~~~~~~ 647 (702)
.+.-+--.-.+.+..+
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 6554322223444444
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.38 E-value=1.1 Score=43.31 Aligned_cols=164 Identities=13% Similarity=-0.008 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhC--CCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhh
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMV--GLRP---DSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEH 550 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~ 550 (702)
++..+..+.+..|++++++..--.-++. .... -...|..+.+++.+..++.+++.+-+.-....|..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555666666667666665432111110 0011 1135666777777777777777777665544454452 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CC-----
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH------QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHP----SC----- 613 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~----- 613 (702)
...|..++.-.+.++++++.|+.+.. .| .-.++-.|...|....|+++|.-...++.++-. ++
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44577788888899999999988765 12 234778899999999999999999999988631 22
Q ss_pred -chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 614 -AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 614 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
....++++-+|..+|+.-+|.+.-++..+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34567788899999999999998887765
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.14 E-value=0.49 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 586 LLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
++.++...|++++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444555555555555555555553
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.86 E-value=13 Score=36.21 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHc--cC----chHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCHH
Q 005329 292 ENAFDAFVRMQESDVKPNEYTFAAIISASAN--LA----RIQWGEQLHAHVLRLGL---VDSLSVANSIMAMYSKCGQLT 362 (702)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 362 (702)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++.-. .++..++..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566788888999988888777653333222 22 24566777777776532 2222333333221 111111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCc--HHHHHHHHHHHH
Q 005329 363 STSIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF--AFASVLSVCGNMAI--LEQGKQIHAHVM 438 (702)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~ 438 (702)
. -.+.+..+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.
T Consensus 157 ~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 E---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred H---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 1245666777777767655433 33333333332222 346667788888
Q ss_pred HhCCCCChhHHHHHH
Q 005329 439 SIGLERTAMIKSALI 453 (702)
Q Consensus 439 ~~~~~~~~~~~~~li 453 (702)
+.|+++....|..+.
T Consensus 210 ~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 210 KNGVKIKYMHYPTLG 224 (297)
T ss_pred HcCCccccccccHHH
Confidence 888887777766544
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.83 E-value=10 Score=32.86 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=82.5
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHH-----HHHHHh
Q 005329 487 YAEHGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCM-----IDLLCR 560 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 560 (702)
+.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. .|.+.....+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456788899999998888877544332 2222333456788999999999988644 3433333222 234677
Q ss_pred cCCHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 561 AGRLSDAENMIENMPHQ--K-DDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 561 ~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
.|.+++...-.+-+..+ | ....-..|.-+-.+.|++..|...|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88999888888777663 2 234556777788899999999999998876
No 295
>PRK10941 hypothetical protein; Provisional
Probab=90.76 E-value=2.4 Score=40.48 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.-.|.+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 446677788999999999999999999999999999999999999999999999998887754
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.69 E-value=1.3 Score=42.04 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.++..++..+...|+.+.+.+.++++++.+|-+...|..+..+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35555666677777777777777777777777777777777777777777777777777655
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=14 Score=34.06 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCC---CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005329 480 WTAMINGYAEHGYSQEAIHLFEKVPMVG---LRPDSVTFMGVLTACSHAGLVDLGFHY 534 (702)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~A~~~ 534 (702)
|.+.|-.+....++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4444455555566666666666533221 112334555566555 34555554443
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.11 E-value=11 Score=32.76 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--CHHHHHHHHhcCC
Q 005329 295 FDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCG--QLTSTSIVFHGMI 372 (702)
Q Consensus 295 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 372 (702)
.+.++.+.+.|++|+...+..++..+.+.|.+.... .+...++-+|.......+-.+.... -.+-+.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345566667778888888888888888877765433 3344455444443333322222111 1233344444432
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHH
Q 005329 373 RRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMS 439 (702)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (702)
..+..++..+...|++-+|+++.+..... +......++.+....++...--.++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888888765222 112223455555555555554444444443
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.09 E-value=7 Score=34.73 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHH--H
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS--VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGC--M 554 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~--l 554 (702)
.+..+..-|.+.|+.+.|++.|.++.+....|.. ..+-.++..+...+++..+.....++........|...-+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666667777777777777776665444433 24455666666667777666666655432111111111111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHhCCC
Q 005329 555 --IDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 555 --~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
+-.+...|++.+|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 1123456777777777666544
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.88 E-value=18 Score=34.29 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
++......|...|.+.+|.++-++++.++|-+...+..|..+|...|+--+|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445566788999999999999999999999999999999999999999888888887754
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.81 E-value=0.72 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999998763
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.79 E-value=6.6 Score=38.25 Aligned_cols=126 Identities=11% Similarity=0.167 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCC---CCchhHHHHHHHHhhhCCCh
Q 005329 190 NKEGLIYFAEMWRSKEQGDSYTFAIVLKASAD--SG----ALNFGREIHTIMLKRGF---DVVSFVANSLATMYSKCGKL 260 (702)
Q Consensus 190 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 260 (702)
+++.+.+++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|++... .++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888888888888777664333322 22 24568888888888643 2344455555433 23332
Q ss_pred ----HHHHHHHhccCC-----CCcchHHHHHHHHHhc-CC--hhHHHHHHHHHHHCCCCCChhhHHHHH
Q 005329 261 ----DYSLRLFERMST-----RDVISWTTIITSYVQM-GE--EENAFDAFVRMQESDVKPNEYTFAAII 317 (702)
Q Consensus 261 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll 317 (702)
+.++.+|+.+.+ .|..-+-+-+-++... .. ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 233344443332 1222222222222211 11 335666666677777666666655443
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=34 Score=37.27 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=24.5
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005329 559 CRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGR 600 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 600 (702)
.+.++.++|.++..+ +.|...|..|+..+...-.+-.++
T Consensus 672 ~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 672 NELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 344555556555544 568888888888876655544444
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.62 E-value=0.75 Score=39.95 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005329 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
+++|+.-|++++.++|+...++.+++.+|...|
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345556666666666766666666666666554
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.41 E-value=9.5 Score=33.00 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHH-----H
Q 005329 513 VTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKDDVVWS-----T 585 (702)
Q Consensus 513 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~-----~ 585 (702)
..|...++ +.+.++.++|+.-|..+.+. |...- .-..-.+.......|+...|...|+++.. .|.+.... .
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 44544443 45678889999999998654 44322 11222344567789999999999999877 33333332 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 586 LLRACMVQGDVNCGRHTAEKILEL-HPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 586 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
-...+...|-++......+.+-.- +|-....-..|+.+-.+.|++.+|...|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 233456888888877766654332 344456667899999999999999999998765
No 306
>PRK09687 putative lyase; Provisional
Probab=89.39 E-value=22 Score=34.49 Aligned_cols=134 Identities=12% Similarity=-0.100 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhhCCCCChhhHHHH
Q 005329 476 DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAG-LVDLGFHYFNLMSDKYGFVPSKEHYGCM 554 (702)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l 554 (702)
+...-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++...+ ....+...+..+.. .++..+-..-
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33344444444544443 344444444443 233333333344443332 12234444444332 3344455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 555 IDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLAN 622 (702)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 622 (702)
+.++.+.|+ ..|+..+-+....++ .....+.++...|+. +|+..+.++.+.+| |..+-....+
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~ 275 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAID 275 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHH
Confidence 556666555 344444444443333 223455555555653 56666666666555 4444333333
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.32 E-value=0.46 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 616 THITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998754
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.23 E-value=22 Score=34.43 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=14.9
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005329 621 ANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~ 641 (702)
+....+.++|++|.++++-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445667788888888887543
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.15 E-value=0.66 Score=29.26 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.++..|+.+|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988865
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.92 E-value=23 Score=34.28 Aligned_cols=17 Identities=6% Similarity=-0.206 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHH
Q 005329 590 CMVQGDVNCGRHTAEKI 606 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~ 606 (702)
+.+.++++.|.+.|+-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34556666666666543
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.89 E-value=6.3 Score=39.77 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHH
Q 005329 558 LCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAE 635 (702)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 635 (702)
+...|+++.+...+..... .....+...++......|+++.|....+.++...-++++....-+-.-...|-++++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 3444555555555444333 22333444555555555555555555555555544444444444444444455555555
Q ss_pred HHHHHHhCCCccCCee
Q 005329 636 VRKMMRSKGVIKEPGW 651 (702)
Q Consensus 636 ~~~~~~~~~~~~~~~~ 651 (702)
.|+++.....+...||
T Consensus 413 ~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 413 YWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHhccCChhcccc
Confidence 5555554444444443
No 312
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.80 E-value=12 Score=30.78 Aligned_cols=140 Identities=11% Similarity=0.134 Sum_probs=74.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 005329 285 YVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYSKCGQLTST 364 (702)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 364 (702)
..-.|..++..++..+.... .+..-++.++.-....-+ ..-+++.+.+.|--.|.. .+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~---C~yvv~~LdsIGkiFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAAD---CDYVVETLDSIGKIFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH-----HHHHHHHHHHHGGGS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhc---hhHHHHHHHHHhhhcCch----------hhcchHHH
Confidence 34467777777777777654 244445555544333222 333344444444333322 22333333
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCC
Q 005329 365 SIVFHGMIRRDIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGL 442 (702)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 442 (702)
...+-.+.. +......-+..+.++|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 76 i~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 76 IECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333322211 2233455667778888888888888888653 467777778888899999999999888888877774
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.79 E-value=0.65 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 005329 615 GTHITLANIYAAKGRWREAAEVRK 638 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~ 638 (702)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887765
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.76 E-value=3.6 Score=39.16 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhhHHH
Q 005329 478 VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSD----KYGFVPSKEHYGC 553 (702)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 553 (702)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777777777777777777643 44667777777777777777777777776644 2366776665554
Q ss_pred HHHH
Q 005329 554 MIDL 557 (702)
Q Consensus 554 l~~~ 557 (702)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.50 E-value=8.8 Score=34.12 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCcHHHHHHHHHHHH
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF--AFASVLSVCGNMAILEQGKQIHAHVM 438 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (702)
.+..+...|.+.|+.++|++.|.++.+....+... .+-.++..+...+++..+......+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555666666666666666666665543333222 33444555555555555555544443
No 316
>PRK09687 putative lyase; Provisional
Probab=88.36 E-value=25 Score=34.00 Aligned_cols=137 Identities=9% Similarity=-0.005 Sum_probs=69.8
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 005329 172 RNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSG-ALNFGREIHTIMLKRGFDVVSFVANSL 250 (702)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 250 (702)
++...--..+.++.+.++ ..++..+-.+.+ .+|...-...+.++...+ +...+...+..+.. .++..+...-
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 344444455555555554 345555555544 233334444444444432 12344444444442 4556666666
Q ss_pred HHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005329 251 ATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISAS 320 (702)
Q Consensus 251 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 320 (702)
+.++.+.|+......+.+.+..++ ..-..+.++...|+. +|+..+..+.+. .||...-...+.++
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 777777776544444444444433 233456666666764 567777766653 24555444444433
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=42 Score=36.41 Aligned_cols=148 Identities=13% Similarity=0.116 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHH---Hh----cCC
Q 005329 491 GYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLL---CR----AGR 563 (702)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~ 563 (702)
.+...|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.+. |.+.....-..+.... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccc
Confidence 35677777777777766 3332222222333333 5555555555444332 3222111111111111 11 225
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhc-C--ChHHHHHH
Q 005329 564 LSDAENMIENMPHQKDDVVWSTLLRACMVQ----GDVNCGRHTAEKILELHPSCAGTHITLANIYAAK-G--RWREAAEV 636 (702)
Q Consensus 564 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~ 636 (702)
.+.+...+.+...+.+......+...|... .+++.|...|.++.+.. +....+++..+... | ++..|.++
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 566677777766666777777777776533 46888999999888877 77888888887654 1 26788888
Q ss_pred HHHHHhCC
Q 005329 637 RKMMRSKG 644 (702)
Q Consensus 637 ~~~~~~~~ 644 (702)
+++..+.+
T Consensus 532 ~~~~~~~~ 539 (552)
T KOG1550|consen 532 YDQASEED 539 (552)
T ss_pred HHHHHhcC
Confidence 88876643
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=22 Score=33.20 Aligned_cols=239 Identities=14% Similarity=0.158 Sum_probs=130.1
Q ss_pred CCHHHHHHHHhcCCCC-------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHcccCc
Q 005329 359 GQLTSTSIVFHGMIRR-------DIISWSTIIGGYSQGGYEEEAFEYLALMRRE---G--PRPNEFAFASVLSVCGNMAI 426 (702)
Q Consensus 359 g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~p~~~~~~~ll~~~~~~~~ 426 (702)
.++++|+.-|+++.+- ...+.-.+|..+.+.|++++.++.+.+|..- . -.-+..+.+.++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4556666666655221 2234556777888888888888888777531 1 12234456666666665555
Q ss_pred HHHHHHHHHHHHHh-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C-------CHHHHHHHHHH
Q 005329 427 LEQGKQIHAHVMSI-----GLERTAMIKSALINMYSKCGSIKEASQIFYETES--------D-------DIVSWTAMING 486 (702)
Q Consensus 427 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~ 486 (702)
.+....+++.-.+. +-...-.+-+.|...|...+.+.+...+++++.. . -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555554433221 1112222334566777777777777777776541 1 12466667788
Q ss_pred HHHcCChHHHHHHHHHchhC-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhhCC--CCC---hhhHHHHH
Q 005329 487 YAEHGYSQEAIHLFEKVPMV-GLRPDSVTFMGVLTAC-----SHAGLVDLGFHYFNLMSDKYGF--VPS---KEHYGCMI 555 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~p~---~~~~~~l~ 555 (702)
|...++-.+-..++++.... ..-|-+... .+|+-| .+.|.+++|..-|=++.+.+.- .|. .--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88887777777788776532 223444333 344544 3567888775433333333221 222 22355666
Q ss_pred HHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005329 556 DLLCRAGR----LSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTA 603 (702)
Q Consensus 556 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 603 (702)
+++.+.|- -.+|. -....|...+...++.+|.. ++..+.++++
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 77777662 11111 01113566677788888754 4444433333
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.19 E-value=0.32 Score=46.49 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=67.9
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005329 559 CRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
...|.++.|++.|..... +|....|..-..++.+.++...|++-+..+++++|+....|-.-+.+..-.|+|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 345677888888777766 345556666666777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCcc
Q 005329 637 RKMMRSKGVIK 647 (702)
Q Consensus 637 ~~~~~~~~~~~ 647 (702)
+....+.++..
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88887776654
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.54 E-value=11 Score=31.77 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005329 524 HAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPHQK-DDVVWSTLLRACM 591 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 591 (702)
..++.+++..+++.|. .+.|+ ...-..-+..+...|+|++|..+|++....+ ....-..|+..|.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 4778888888888775 45665 2222233555678888888888888888743 3333334444443
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.13 E-value=92 Score=39.04 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
-..+|....+.++..|.++.|...+-.+.+.. -+..+.-.+..+..+|+...|+.++++-.+..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45688899999999999999999988888877 46788889999999999999999999887643
No 322
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=86.44 E-value=39 Score=34.14 Aligned_cols=69 Identities=7% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005329 349 NSIMAMYSKCGQLTSTSIVFHGMIRR---DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVC 421 (702)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (702)
..|+.-|...|++.+|..+++++--| ....+.+++.+.-+.|+....+++++..-..|. .|.+.+-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 34777788899999999999888555 456788889998888888888888887766553 3444444444
No 323
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.41 E-value=0.62 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHH
Q 005329 545 VPS-KEHYGCMIDLLCRAGRLSDAE 568 (702)
Q Consensus 545 ~p~-~~~~~~l~~~~~~~g~~~~A~ 568 (702)
.|+ ...|..+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444 566666666666666666654
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.30 E-value=1 Score=38.44 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005329 181 ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHT 233 (702)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 233 (702)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444444555555555555544433444445555555555544444444443
No 325
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.04 E-value=6.1 Score=35.53 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=73.3
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNC 598 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~ 598 (702)
|-..|-+..|+-=|.... .+.|+ +..||.|.--+...|+++.|.+.|+...+ .|. ..+...-+-++.--|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 445566667766666655 67787 77888888888889999999999988877 443 2233333334456788888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHH--hcCChHHHHHHH
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYA--AKGRWREAAEVR 637 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~ 637 (702)
|.+-+.+-.+.+|+||. .-.|.|. ..=+..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHH
Confidence 88888888888887763 2234443 333555665543
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.96 E-value=1.5 Score=25.09 Aligned_cols=29 Identities=34% Similarity=0.332 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 583 WSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
|..++..+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444555555555555444444
No 327
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=2.2 Score=38.83 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=50.6
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHH
Q 005329 521 ACSHAGLVDLGFHYFNLMSDKYGFVPSKEH-YGCMIDLLCRAGRLSDAENMIENMPH-QKDDV-VWSTLLRACMVQGDVN 597 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~-~~~~l~~~~~~~g~~~ 597 (702)
.|.....++.|+..|.+.+ .+.|+..+ |..=+-++.+..+++.+..-..+... .|+.. ..-.+.........++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555666777777666655 45676533 34445556666677666655555544 44433 3344555555666677
Q ss_pred HHHHHHHHHHHh
Q 005329 598 CGRHTAEKILEL 609 (702)
Q Consensus 598 ~A~~~~~~~~~~ 609 (702)
.|+..++++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777777777554
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.91 E-value=3.9 Score=27.60 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
-.+.-++.+.|+++.|.+..+.+++.+|+|.....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34667788999999999999999999998765543
No 329
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.37 E-value=1.1e+02 Score=38.37 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
..+|-...+...++|+++.|...+-.+.+..-+..+-..+.-....|+...|..++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 556777777777788888888777666653344555666677778888888888888888654
No 330
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.36 E-value=1.4 Score=37.59 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=62.3
Q ss_pred HHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHH
Q 005329 114 ALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEG 193 (702)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 193 (702)
+++.+...+.+.....+++.+...+...+....+.++..|++.++.+...+.++... ..-...+++.+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 456666777888888888888877766778889999999999988888888888433 24445677777777777777
Q ss_pred HHHHHHH
Q 005329 194 LIYFAEM 200 (702)
Q Consensus 194 ~~~~~~m 200 (702)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7777765
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.25 E-value=2.3 Score=26.69 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 609 (702)
.+++.|...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888888889999999999888874
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.00 E-value=3.7 Score=31.58 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 600 RHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
...+++.++.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456677777888888888888888888888888888877776653
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.44 E-value=6.7 Score=35.07 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=56.0
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCchhHHHHHHHHHhcCChHH
Q 005329 559 CRAGRLSDAENMIENMPHQK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELH----PSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
.+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++.+++++. ..|+..+..|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34455 66777777776644 33444445556666889999999999999975 2368899999999999999998
Q ss_pred HH
Q 005329 633 AA 634 (702)
Q Consensus 633 A~ 634 (702)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.44 E-value=5 Score=35.06 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005329 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVI 646 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 646 (702)
+++|.+.|+++++.+|.|......|-.. ++|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhh
Confidence 6788889999999999766555544332 3466676666665543
No 335
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.14 E-value=3.4 Score=42.70 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=78.7
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVN 597 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~ 597 (702)
....|+...|...+..+. ...|. ....-.|.+.+.+.|...+|..++..... ...+.++..+++++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 345788888888887765 44554 33445677788888888888888877654 345567888999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005329 598 CGRHTAEKILELHPSCAGTHITLANIYA 625 (702)
Q Consensus 598 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 625 (702)
.|++.+++++++.|+++.+-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999998888766655
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.09 E-value=9 Score=29.80 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=41.6
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005329 495 EAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 495 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
+..+-+..+....+.|++....+.+++|.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666667889999999999999999999999999998877633 33447776664
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=12 Score=35.79 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------CHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC
Q 005329 441 GLERTAMIKSALINMYSKCGSIKEASQIFYETES-D--------DIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD 511 (702)
Q Consensus 441 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (702)
|.+.+..+...++..-....+++.+...+-+++. | ...+|-.+ +..-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4444444555555555556777777777766653 2 22233222 233467899999988889999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005329 512 SVTFMGVLTACSHAGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 512 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 541 (702)
..+++.+|..+.+.+++..|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887776654
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.04 E-value=73 Score=35.13 Aligned_cols=164 Identities=7% Similarity=-0.020 Sum_probs=87.7
Q ss_pred cchHHHHHHHHH-cCCChhHHHHHHHHhhhCCCCCCCHH----H-HHHHHHHhhccCCchhhhHHHHHHHHhcCC----C
Q 005329 72 EISWTTLISGYV-KAMDSIEALALFSRVWVEPQMNMDPF----I-LSLALKACALNVNVNYGESLHGYTVKTGFV----N 141 (702)
Q Consensus 72 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~----~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~ 141 (702)
..++-.+...+. ...+.++|...+++.+... -+++-. . -..+++.+.+.+... |....+..++.--. +
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 335555566555 5778888888888765331 112211 1 223345555555444 77777776654222 2
Q ss_pred chhHHHHH-HHhhhcCCChhHHHHHhccCC-------CCCcchHHHHHHHHH--hCCChHHHHHHHHHHHHCCC------
Q 005329 142 SVFVGSAL-LDMYTKLGKIELGCRVFDEMP-------LRNVVSWTAIITGLV--RAGHNKEGLIYFAEMWRSKE------ 205 (702)
Q Consensus 142 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~------ 205 (702)
-...+.-+ +..+...++...|.+.++.+. .+....+-.++.+.+ +.+.++++++.+.++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23333333 333333378888888887664 122233333444333 45666777777776633211
Q ss_pred ---CCChhhHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 005329 206 ---QGDSYTFAIVLKASA--DSGALNFGREIHTIMLK 237 (702)
Q Consensus 206 ---~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 237 (702)
.|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234456666666654 56777677766665544
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.73 E-value=13 Score=28.72 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005329 225 LNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQES 304 (702)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (702)
.++|..+-+.+...+- ....+--.-+..+.+.|++++|..+.+.+..||...|-+|-.. +.|-.+....-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 4566666655555431 1333333344667789999999999999999999999877654 667777777777788777
Q ss_pred CCCCChhhHH
Q 005329 305 DVKPNEYTFA 314 (702)
Q Consensus 305 g~~p~~~t~~ 314 (702)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 45555553
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.44 E-value=18 Score=37.92 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 005329 459 CGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSV-TFMGVLTACSHAGLVDLGFHYFNL 537 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~ 537 (702)
.|+++.|..++..++++ ..+.++.-+.+.|-.++|+++ .+|+. -|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 45666666655555432 233444555566666666543 23322 2222 2356777777776654
Q ss_pred hHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005329 538 MSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 538 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
.. +..-|..|.++....|++..|.+.|.+... |..|+-.+-..|+.+.-..+...+.+.+..|..
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-- 727 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-- 727 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCChhHHHHHHHHHHhhcccchH--
Confidence 42 455678888888888888888888877653 455666666667666555555555554443332
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 005329 618 ITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
-.+|...|++++..+++.+
T Consensus 728 ---F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ---FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHcCCHHHHHHHHHh
Confidence 2345667788777777654
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.32 E-value=15 Score=35.12 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=71.3
Q ss_pred hCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 005329 238 RGFDVVSFVANSLATMYSKCGKLDYSLRLFERMST-RD-----VISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEY 311 (702)
Q Consensus 238 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (702)
.|.+....+...++..-....+++.+...+-++.. |+ ..+-.++++ ++-.-++++++.++..=...|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666666777888777766652 11 111122222 233446778888888888899999999
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 005329 312 TFAAIISASANLARIQWGEQLHAHVLRLG 340 (702)
Q Consensus 312 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 340 (702)
+++.+|+.+.+.++...|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776654
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.23 E-value=53 Score=35.59 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 005329 527 LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRA---GRLSDAENMIENMPHQKDDVVWSTLLRACM----VQGDVNCG 599 (702)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A 599 (702)
+.+.|..+|....+. | .|+... .+..++... .+...|.++|..+........+-.+...|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 556677777666433 2 222222 233333222 345677777777666444444444433332 23467777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCcc
Q 005329 600 RHTAEKILELHPSCAGTHITLANIYAAK-GRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 647 (702)
...++++-+.+ ++.+...++..+.-. ++++.+.-.+..+.+.|.+.
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 77777777776 233333333333222 66666666666665555433
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.68 E-value=9.3 Score=29.37 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 005329 494 QEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMID 556 (702)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 556 (702)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+....+.+ .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 34555556666666788888889999999999999999999988765533 24446655554
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=40 Score=31.00 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=52.4
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-h---hhHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHH-----HHHHHHH-h
Q 005329 526 GLVDLGFHYFNLMSDKYGFVPS-K---EHYGCMIDLLCRAGRLSDAENMIENMPH---QKDDVVWS-----TLLRACM-V 592 (702)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~-----~l~~~~~-~ 592 (702)
.+++.|+..|+...+-+...-. . ..+--....-...+++.+|+++|++... ..+..-|. .-...|. .
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5667777777766544322222 1 1222233334567889999999988755 11222221 1122233 3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCchh
Q 005329 593 QGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 593 ~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
..|.-.+...+++-.+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 478888888888888999976554
No 345
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=35 Score=33.94 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=134.8
Q ss_pred cCcHHHHHHHHHHHHH-----hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHH-HHHcCChHHHH
Q 005329 424 MAILEQGKQIHAHVMS-----IGLERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMING-YAEHGYSQEAI 497 (702)
Q Consensus 424 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 497 (702)
.++.+.+.+-+-...+ .+...+..++..++..|...++|+.--+ .+.. .-++|+...|+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne---------------~i~~Lskkrgqlk~ai 89 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNE---------------QIRLLSKKRGQLKQAI 89 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHH---------------HHHHHHHHhhHHHHHH
Confidence 4556665553332221 2334455556666666666666655322 2222 23566666665
Q ss_pred HHH-HH-chhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005329 498 HLF-EK-VPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS---KEHYGCMIDLLCRAGRLSDAENMIE 572 (702)
Q Consensus 498 ~~~-~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (702)
... ++ |.-..-.||..|-..++..+. ...+. .+-.. ...-..|...+...|+.++|..++.
T Consensus 90 ~~Mvq~~~~y~~~~~d~~~k~~li~tLr-------------~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~ 155 (439)
T KOG1498|consen 90 QSMVQQAMTYIDGTPDLETKIKLIETLR-------------TVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILC 155 (439)
T ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHH-------------HhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 422 22 221122455555555554432 11111 11111 1222346777888999999999988
Q ss_pred hCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------chhHHHHHHHHHhcCChHHHHHHH
Q 005329 573 NMPHQ--------KDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC-------AGTHITLANIYAAKGRWREAAEVR 637 (702)
Q Consensus 573 ~~~~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 637 (702)
+.... --....---++.|...+|+-.|.-+-+++....-+. ...|..++......+.+-++-+.+
T Consensus 156 el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Y 235 (439)
T KOG1498|consen 156 ELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSY 235 (439)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 87652 111222344677889999999999999987754222 246788888888999999999999
Q ss_pred HHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHH--HHHHhcCCCCCCccc
Q 005329 638 KMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDL--LASRESDIDDLDSLV 697 (702)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~--l~~~~~~~~~~~~~~ 697 (702)
+.....|..+...--|+.+-..+..|..- -|+.-+....+.+ ..+++.-.|++..++
T Consensus 236 raiy~t~~vk~d~~kw~~vL~~iv~f~~L---Ap~dneQsdll~~is~dKkL~e~p~~k~lL 294 (439)
T KOG1498|consen 236 RAIYDTGNVKEDPEKWIEVLRSIVSFCVL---APHDNEQSDLLARISNDKKLSELPDYKELL 294 (439)
T ss_pred HHHhcccccccChhhhhhhhhhheeEEee---cCCCcHHHHHHHHHhcccccccCccHHHHH
Confidence 99988887776554555543333233322 2333333333333 334444456665554
No 346
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=83 Score=34.30 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=16.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005329 212 FAIVLKASADSGALNFGREIHTIMLK 237 (702)
Q Consensus 212 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 237 (702)
|..+.+++.-..+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33445556666666666666666665
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.91 E-value=68 Score=33.26 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHH
Q 005329 408 RPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES---DDIVSWTAMI 484 (702)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 484 (702)
..|.....+++..+.......-++.+..++...|- +...+..++++|... ..+.-..+++++.+ .|++.-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34556666777777777777766666666666542 334455555555555 33444444443332 2333333333
Q ss_pred HHHHHcCChHHHHHHHHHchh
Q 005329 485 NGYAEHGYSQEAIHLFEKVPM 505 (702)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~ 505 (702)
.-|-+ ++.+.+..+|.++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH
Confidence 33333 455555555555443
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.28 E-value=92 Score=34.31 Aligned_cols=46 Identities=30% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 005329 177 WTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSG 223 (702)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 223 (702)
-=++|-.+.|.|++++|.++..+..+ ........|...+..+....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 33678889999999999999966544 35666778888888887753
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.28 E-value=5.8 Score=35.72 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCA 614 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 614 (702)
.+.-+..+.+.+...+|+...++-.+ +| +......+.+.++-.|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788888888888766555 55 455667788888888999998888888888888653
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.54 E-value=3.4 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 618 ITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468888999999999999999888654
No 351
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=8.5 Score=37.10 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH----QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
+|--=++-|.+.+++..|...|.+... .| +...|+.-..+-...|++..|+.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 344446678889999999999988766 23 345666666677788999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHH
Q 005329 624 YAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~ 641 (702)
+....++.+|....++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999888877766543
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.26 E-value=15 Score=33.81 Aligned_cols=57 Identities=16% Similarity=0.014 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.+.+...|++-++++.-..++..+|.|..+|..-+.+.+..=+..+|..-|.++.+.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334457788888888888888888888888888888888887888888877777653
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.96 E-value=3.9 Score=23.13 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887754
No 354
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.39 E-value=8.5 Score=29.89 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC---------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSC---------AGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..+.|++..|.+.+.+.++..... ......++.+....|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457888999988888887754221 23456678888999999999999998876
No 355
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=77.32 E-value=2.3 Score=34.61 Aligned_cols=43 Identities=40% Similarity=0.520 Sum_probs=30.2
Q ss_pred eeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCccccCCC
Q 005329 650 GWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDSLVHDAE 701 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 701 (702)
+.||.+. +.|.++|..||+...+. -....+..|++..++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~-----~~~~~~~~~~~~~~~~~~~ 44 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN-----KMKEEGYVPDTKEVGHDVD 44 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH-----HHHHcCCcchhhhhCCCch
Confidence 4567754 99999999999983322 2244577788888877654
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.13 E-value=6.2 Score=22.79 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005329 594 GDVNCGRHTAEKILELHPSCAGTHITLANI 623 (702)
Q Consensus 594 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 623 (702)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877653
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.12 E-value=32 Score=26.74 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=57.2
Q ss_pred CchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005329 123 NVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWR 202 (702)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (702)
..++|.-+-+.+...+-. ...+--..++.+...|++++|..+.+.+..||...|-+|-.. +.|-.+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356666666665554422 233333344567788999999999999999999998877553 56677777777777766
Q ss_pred CCCCCChhhH
Q 005329 203 SKEQGDSYTF 212 (702)
Q Consensus 203 ~~~~p~~~~~ 212 (702)
+| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.03 E-value=61 Score=29.88 Aligned_cols=55 Identities=5% Similarity=-0.134 Sum_probs=35.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSCAG-------THITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
-...+++.+|+.+|+++-...-+|+- .+..-+.++.-.++.-.+...+++-.+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 45778999999999999876654432 23333444444466666667777665543
No 359
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.95 E-value=15 Score=24.88 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
..++.++..+.+.|++++|.++.+.+.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35678899999999999999999999873
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.63 E-value=6.8 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCchhHH---HHHHHHHhcCChHHHHHH
Q 005329 592 VQGDVNCGRHTAEKILELHPSCAGTHI---TLANIYAAKGRWREAAEV 636 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 636 (702)
...+.+.|+..|+++++..++.+.-+. .|+.+|...|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888887766554444 455667788888887765
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.53 E-value=35 Score=28.90 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHhhhcCCChhHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCChhhHHHH
Q 005329 146 GSALLDMYTKLGKIELGCRVFDEMP---------LRNVVSWTAIITGLVRAGH-NKEGLIYFAEMWRSKEQGDSYTFAIV 215 (702)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 215 (702)
.|.++.-....+++....++++.+. ..+..+|++++.+..+..- ---+..+|..|++.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555556666655555543 1244566666666654444 22355666666666666676677777
Q ss_pred HHHHhcc
Q 005329 216 LKASADS 222 (702)
Q Consensus 216 l~~~~~~ 222 (702)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6666543
No 362
>PRK12798 chemotaxis protein; Reviewed
Probab=76.51 E-value=92 Score=31.63 Aligned_cols=206 Identities=15% Similarity=0.239 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHhhCCC----CCHHHHHHHHHH-HHHcCChHHHHHHHHHchhCCCCCCH----HHHHHHHHHHhccCcHH
Q 005329 459 CGSIKEASQIFYETES----DDIVSWTAMING-YAEHGYSQEAIHLFEKVPMVGLRPDS----VTFMGVLTACSHAGLVD 529 (702)
Q Consensus 459 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 529 (702)
.|+.++|.+.+..+.. +....+-.|+.+ .....++.+|+++|+...-. -|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888887763 345566666655 34567899999999887642 3433 23444455567889999
Q ss_pred HHHHHHHHhHHhhCCCCChhhHH-HHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005329 530 LGFHYFNLMSDKYGFVPSKEHYG-CMIDLLCRAG---RLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
++..+-..-..+|.-.|-...|. .++..+.+.+ ..+.-..++..|...-....|..+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88777776666655555433332 3333333333 4455555666665444566888899999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHH
Q 005329 606 ILELHPSCAGTHITLANIYA-----AKGRWREAAEVRKMMRSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRML 680 (702)
Q Consensus 606 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 680 (702)
+..+.+ ....-...+..|. -..+.++|.+.+..+... ..+|.+..+....
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 999873 2333334444443 335677777766554332 3567788888877
Q ss_pred HHHHHHhcCCC
Q 005329 681 DLLASRESDID 691 (702)
Q Consensus 681 ~~l~~~~~~~~ 691 (702)
..+...+..-|
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 77777777666
No 363
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.09 E-value=56 Score=35.47 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=98.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChh
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEF----------AFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAM 447 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (702)
+...++-.|-...+++...++.+.+.. -||.. .|...++---+-|+-+.|..+.-.+.+..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 334455556666667777777666654 23221 22223333334466666666544444332221111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHH---HHHHHHHHhc
Q 005329 448 IKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVT---FMGVLTACSH 524 (702)
Q Consensus 448 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~ 524 (702)
+||-+|++ |++|- +-+.|...+..+.|++.|++.-+ +.|+... +..|+.+-.+
T Consensus 280 -------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 -------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred -------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 23334432 22221 12334455566778888888775 4666543 3334333211
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
.++...++- .+ | -.|-..+++.|..++-..+|+... .+.+-.-.+++.+|.+..+
T Consensus 336 --~Fens~Elq-~I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 --HFENSLELQ-QI----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred --hccchHHHH-HH----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHH
Confidence 111111111 00 1 224456678888888777776532 3445556788999999999
Q ss_pred HHHHhCCCCchh
Q 005329 605 KILELHPSCAGT 616 (702)
Q Consensus 605 ~~~~~~p~~~~~ 616 (702)
.|+++.|.....
T Consensus 391 ~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 391 MMFKLKPPVWYL 402 (1226)
T ss_pred HHhccCCceehH
Confidence 999998865443
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.85 E-value=2.3 Score=42.99 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcC
Q 005329 518 VLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEH-YGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQG 594 (702)
Q Consensus 518 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g 594 (702)
-+......+.++.|..++.+++ .+.|+-.. |..=..++.+.+++..|+.=+..+.+ .|. ...|-.-+.+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3455667788999999999888 45887444 33334778888888888877766665 443 345556667788888
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005329 595 DVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 595 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
.+.+|...++....+.|+++.....+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 999999999999999998776655443
No 365
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.64 E-value=83 Score=30.68 Aligned_cols=115 Identities=12% Similarity=-0.027 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005329 527 LVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAG-------RLSDAENMIENMPHQKDDVVWSTLLRACMV----QGD 595 (702)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 595 (702)
+..+|..+|+++.+. |..+.......+...|...+ +...|...+.++...-+......+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666544 43322222333344443321 223566666666554455555555544432 337
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 005329 596 VNCGRHTAEKILELHPSCAGTHITLANIYAAKG---------------RWREAAEVRKMMRSKGV 645 (702)
Q Consensus 596 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 645 (702)
..+|...|+++-+.+. ......++ ++...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7888888888887776 55566666 555555 66777777777766554
No 366
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.42 E-value=21 Score=27.52 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005329 192 EGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKR 238 (702)
Q Consensus 192 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 238 (702)
++.+-+..+....+.|++......+++|.+.+++..|.++++.++..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555556667777777777777777777777777777766643
No 367
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.77 E-value=98 Score=31.10 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 548 KEHYGCMIDLLCRAGRLSDAENMIENMPHQK------DDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
..++..+++.+.+.|+++.|...+..+.... .+.....-+......|+..+|...++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555666666666666666665554411 233333444555556666666666655555
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.55 E-value=49 Score=33.75 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=33.8
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 005329 486 GYAEHGYSQEAIHLFEKVPMVGLRPDSV--TFMGVLTACS--HAGLVDLGFHYFNLMSD 540 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~~ 540 (702)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667788888888877765 555444 3444444443 35567777777776654
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.41 E-value=32 Score=36.24 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred hhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHH
Q 005329 254 YSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLH 333 (702)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 333 (702)
..+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556666666665543 2445577777777777777777777766543 344555556666666555555
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 005329 334 AHVLRLGLVDSLSVANSIMAMYSKCGQLTSTSIVFHGMIR 373 (702)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (702)
....+.|. . |....+|...|+++++.+++.+-.+
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 55555552 1 2333456677888888888766533
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.30 E-value=6.5 Score=21.73 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 005329 553 CMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~ 571 (702)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444455555554444
No 371
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.00 E-value=22 Score=27.78 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 192 EGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 192 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
+..+-+..+....+.|++......+++|.+.+++..|.++++.++..- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 444555555556677777777777777777777777777777766543 22222555444
No 372
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.56 E-value=35 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005329 223 GALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQ 302 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (702)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456777778777777653 334444444566788899999966555666788888877654 37788888888888777
Q ss_pred HCC
Q 005329 303 ESD 305 (702)
Q Consensus 303 ~~g 305 (702)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 665
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.19 E-value=29 Score=32.00 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHHhC--CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 582 VWSTLLRACMVQGDVN-------CGRHTAEKILELH--PSC----AGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
.+..+.+.|...|+.+ .|.+.|+++++.. |.. ......+|.+..+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4444556666666643 4555555555544 222 4577789999999999999999999988754
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.07 E-value=6.7 Score=35.60 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 590 CMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 590 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
..+.++.+.+-+++.+++++-|+....|..++..-.+.|+++.|...+++..+..+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34677888888888888888888888888888888888888888888888777554
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.45 E-value=33 Score=30.88 Aligned_cols=74 Identities=9% Similarity=-0.067 Sum_probs=35.2
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 005329 494 QEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYG--FVPSKEHYGCMIDLLCRAGRLSDAE 568 (702)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 568 (702)
+.|.+.|-++...+.--++.....|.. |....+.+++++++....+..+ -.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555544432223333333333 2234555556555555544321 1344556666666666666665553
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.11 E-value=17 Score=30.04 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchh
Q 005329 545 VPSKEHYGCMIDLLCRAGRLS---DAENMIENMPH--QK--DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGT 616 (702)
Q Consensus 545 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 616 (702)
.++..+--.+..++.+..+.+ +.+.++++..+ .| +.....-|.-++.+.++++.+.++.+..++.+|+|...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 556666666777777766544 45567777664 23 23444556777889999999999999999999976643
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.52 E-value=1.6e+02 Score=32.14 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhccCCchhhhHHHH
Q 005329 108 PFILSLALKACALNVNVNYGESLHG 132 (702)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (702)
+.-|. .+..+.-.|.++.|.+++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 44555 5566666677777777663
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=47 Score=31.46 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 005329 618 ITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.-++.++.+.|++.+|+.++..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 357788889999999988766553
No 379
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.53 E-value=23 Score=35.99 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHhcCCCCCCccccCCCC
Q 005329 682 LLASRESDIDDLDSLVHDAED 702 (702)
Q Consensus 682 ~l~~~~~~~~~~~~~~~~~~~ 702 (702)
.++..+.-|.++..-+|+||+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~ 549 (831)
T PRK15180 529 KIHDVFEAWNNTALSLHSVDD 549 (831)
T ss_pred HHHHHHHHhccceeeeechhh
Confidence 455666678888888877763
No 380
>PRK10941 hypothetical protein; Provisional
Probab=69.34 E-value=35 Score=32.72 Aligned_cols=68 Identities=9% Similarity=-0.048 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHH
Q 005329 551 YGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHI 618 (702)
Q Consensus 551 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 618 (702)
.+.+-.+|.+.++++.|+.+.+.+.. +.++.-+.--+-.|.+.|.+..|..-++.-++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34566678888999999998888877 445666777788888999999999999999998887776543
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.24 E-value=2e+02 Score=32.37 Aligned_cols=215 Identities=15% Similarity=0.048 Sum_probs=112.2
Q ss_pred cccCcHHHHHHHHHHHHHhCCCCChh-------HHHHHHH-HHHhcCCHHHHHHHHhhCC--------CCCHHHHHHHHH
Q 005329 422 GNMAILEQGKQIHAHVMSIGLERTAM-------IKSALIN-MYSKCGSIKEASQIFYETE--------SDDIVSWTAMIN 485 (702)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 485 (702)
....++.+|..+..++...-..|+.. .++++-. .....|+++.|.++-+... ...+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777777766665433222211 1222211 2234678888877765533 235677788888
Q ss_pred HHHHcCChHHHHHHHHHchhCCCCCCHHH---HHHHH--HHHhccCcH--HHHHHHHHHhHHhhCC-CC----ChhhHHH
Q 005329 486 GYAEHGYSQEAIHLFEKVPMVGLRPDSVT---FMGVL--TACSHAGLV--DLGFHYFNLMSDKYGF-VP----SKEHYGC 553 (702)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll--~~~~~~g~~--~~A~~~~~~~~~~~~~-~p----~~~~~~~ 553 (702)
+..-.|++++|..+.++..+..-.-+... +..+. ..+...|.. .+....|......+.- .| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999888776654321223322 22222 234556632 2223333333222111 11 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-----CC--CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-c-hhH---HH
Q 005329 554 MIDLLCRAGRLSDAENMIENMPH-----QK--DDV--VWSTLLRACMVQGDVNCGRHTAEKILELHPSC-A-GTH---IT 619 (702)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~~~-----~p--~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-~~~---~~ 619 (702)
+..++.+ ++.+..-.....+ .| -.. .+..|+......|+.+.|...+.++..+.-+. + ..| ..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333333222222 22 222 22367777889999999999999988765322 1 111 12
Q ss_pred HHHH--HHhcCChHHHHHHHHH
Q 005329 620 LANI--YAAKGRWREAAEVRKM 639 (702)
Q Consensus 620 l~~~--~~~~g~~~~A~~~~~~ 639 (702)
.+.+ -..+|+.++|...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2467898888887765
No 382
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.21 E-value=21 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHHhCC
Q 005329 583 WSTLLRACMVQGDVNCGRHT--AEKILELHP 611 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p 611 (702)
|-.+...+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555566666666666 335555544
No 383
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.70 E-value=57 Score=27.16 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005329 577 QKDDVVWSTLLRACMVQG---DVNCGRHTAEKILE-LHPSC-AGTHITLANIYAAKGRWREAAEVRKMMRSK 643 (702)
Q Consensus 577 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 643 (702)
.++..+--.+.+++.++. +..+.+.+++.+++ -.|.. ....+.|+-.+.+.|.|++++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456666667778877665 56778899999997 34443 567778889999999999999999998874
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.00 E-value=12 Score=27.64 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=7.4
Q ss_pred cCcHHHHHHHHHHhHHh
Q 005329 525 AGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~ 541 (702)
....++|+..|....++
T Consensus 19 ~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 19 QNETQQALQKWRKALEK 35 (80)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 33344444444444433
No 385
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.98 E-value=1.6e+02 Score=30.75 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=63.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005329 375 DIISWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALIN 454 (702)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 454 (702)
|-...-+++..+..+....-+..+..+|..- ..+-..|..++.+|... ..+.-..+|+.+.+..+. +...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 4556667788888888888888888888874 45667777888887777 556667778877776554 2333344555
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 005329 455 MYSKCGSIKEASQIFYET 472 (702)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~ 472 (702)
.|-+ ++.+.+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 5555 6666666666654
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.81 E-value=1.2e+02 Score=29.16 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCchHHHHHHHHHHHH-----hCCCCchHHHH
Q 005329 278 WTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASANLARIQWGEQLHAHVLR-----LGLVDSLSVAN 349 (702)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 349 (702)
++...+.|..+|.+.+|.++-+...... +.+...+-.++..++..|+--.+.+-++.+.+ .|+..+..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4445567888889999988888877654 55666777888888888887767666665533 45555544443
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.53 E-value=1.2e+02 Score=29.16 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=40.2
Q ss_pred CCCchhHHHHHHHHhhhCCChHHHHHHHhccC-----CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 005329 240 FDVVSFVANSLATMYSKCGKLDYSLRLFERMS-----TRDVISWTTIITSYVQMGEEENAFDAFV 299 (702)
Q Consensus 240 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (702)
-.++..+...++..+++.+++..-.++++... ..|...|..+|+.....|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 35566666777777777777777777776543 2366777777777777777765544443
No 388
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.25 E-value=2.1e+02 Score=31.73 Aligned_cols=146 Identities=9% Similarity=-0.032 Sum_probs=83.3
Q ss_pred HHHHHccCChHHHHHHhhcCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccC
Q 005329 48 LKHLVKSGYLHDARKMFDTMTQR-----DEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNV 122 (702)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 122 (702)
++=+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-+|. .-+...|..-+..++..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHHhcccc
Confidence 44455778888888887765432 12356677888888999999988888886 335566666666666555
Q ss_pred CchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhH---HHHHh-----------ccCC------CCCcchHHHHHH
Q 005329 123 NVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIEL---GCRVF-----------DEMP------LRNVVSWTAIIT 182 (702)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~-----------~~~~------~~~~~~~~~li~ 182 (702)
+...... .+.......++.+|..++..+.. .+... .++.| +... ..+...-..|+.
T Consensus 438 ~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 438 QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred ccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 5433222 11111122344455555544443 22111 11111 1111 012223344778
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 005329 183 GLVRAGHNKEGLIYFAEMWR 202 (702)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~ 202 (702)
-|...+++..|+.++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888999999888877643
No 389
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.56 E-value=2.6e+02 Score=32.66 Aligned_cols=184 Identities=8% Similarity=-0.020 Sum_probs=93.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHh
Q 005329 444 RTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACS 523 (702)
Q Consensus 444 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 523 (702)
+++.+-...++.+...+.. ....+...+..+|...-...+.++...+..+. +..+. -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444455555443211 12233444556666666666666665544322 11222 2445555555555555
Q ss_pred ccCcHHH-HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005329 524 HAGLVDL-GFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 524 ~~g~~~~-A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
..+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+...++...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2333334332 345666666677777777655554455555555666666666666666654 344455
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 603 AEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 603 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
+..+++ +| +...-..-++++.+.+.-.++...+..+.+
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 444442 23 455555556666554333455555555544
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.36 E-value=1.7e+02 Score=30.36 Aligned_cols=147 Identities=7% Similarity=-0.071 Sum_probs=60.0
Q ss_pred HHhhhcCCChhHHHHHhccCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHhccC
Q 005329 150 LDMYTKLGKIELGCRVFDEMPLR----NVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYT--FAIVLKASADSG 223 (702)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 223 (702)
+...++.|+.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 33444556666666666543211 111122 22333344444 34444445555544321 112333344555
Q ss_pred ChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhhCCChHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHH
Q 005329 224 ALNFGREIHTIMLKRGFDVVSF--VANSLATMYSKCGKLDYSLRLFERMSTRDVI---SWTTIITSYVQMGEEENAFDAF 298 (702)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 298 (702)
+.+-+..+ .+.|..++.. .-.+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 55443333 3344332211 1112233344456665555555543333221 1123333334445443 34
Q ss_pred HHHHHCCCCCC
Q 005329 299 VRMQESDVKPN 309 (702)
Q Consensus 299 ~~m~~~g~~p~ 309 (702)
+.+.+.|..++
T Consensus 219 ~~Ll~~gad~n 229 (413)
T PHA02875 219 RLFIKRGADCN 229 (413)
T ss_pred HHHHHCCcCcc
Confidence 44455565554
No 391
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.17 E-value=2.1e+02 Score=31.52 Aligned_cols=74 Identities=18% Similarity=0.111 Sum_probs=43.1
Q ss_pred hhHHHHHHccCChHHHHHHhhcCC-C-CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccC
Q 005329 45 NSQLKHLVKSGYLHDARKMFDTMT-Q-RDEISWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNV 122 (702)
Q Consensus 45 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 122 (702)
-.++++|.+..-.... .....-. . .+...| .+|--|.|+|++++|.++....... .......|...+..+....
T Consensus 84 ~~~V~afv~~~~~~~~-~~~~~~l~~~~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 84 YNKVRAFVNVRLKRPG-AWTDSGLEIVNGDPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHHHCTTBESS-CBSSTT--EETTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhcccC-CCcccccccCCCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCC
Confidence 3456677665443222 1111111 1 244456 4555788999999999999666533 3555677888888887653
No 392
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.04 E-value=1.1e+02 Score=28.06 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhhHHHHH
Q 005329 480 WTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS----KEHYGCMI 555 (702)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 555 (702)
.+.-++.+.+.++..+++...+.-++.. +.|..+-..+++.++-.|++++|..-++-.. .+.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445667778888899988887766642 3455667778888999999999988777664 34454 45565555
Q ss_pred HHHHhcCCHHHHH-HHHHhCCCC----CCHHHHHH-HHHHHH--hcCCHHHHHHHHHHHHHhCCCCch
Q 005329 556 DLLCRAGRLSDAE-NMIENMPHQ----KDDVVWST-LLRACM--VQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 556 ~~~~~~g~~~~A~-~~~~~~~~~----p~~~~~~~-l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.+ +.+. ++|.--..+ .....|.. |..+.. ..|..+.+..+-+.+++..|..+.
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 53 2222 233332221 12334433 333333 334555566777777877775544
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.84 E-value=9 Score=34.83 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005329 559 CRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC 613 (702)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 613 (702)
.+.|+.+.|.+++.++.. +.....|-.+...-.+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345555555555555554 2234455555555566666666666666666666554
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.78 E-value=36 Score=29.94 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChH
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWR 631 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 631 (702)
+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+...+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 3446666666666666666666 5555544334444433333333
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.74 E-value=17 Score=23.37 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCC
Q 005329 382 IIGGYSQGGYEEEAFEYLALMRREG 406 (702)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g 406 (702)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5666777777777777777776543
No 396
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.66 E-value=13 Score=37.83 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=77.4
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhc
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMG-VLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRA 561 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 561 (702)
+..+...+.++.|+.++.+.++ +.||...|-. =..++.+.+++..|..=+..+.+ ..|+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4556677899999999999997 5787765443 34778899999999887777764 3565 44555555667777
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh
Q 005329 562 GRLSDAENMIENMPH-QKDDVVWSTLLRACMV 592 (702)
Q Consensus 562 g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~ 592 (702)
+.+.+|...|+.... .|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 888899999888877 7887777777666643
No 397
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.52 E-value=59 Score=26.35 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCchhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 005329 582 VWSTLLRACMVQGDVNCGRHTAEKIL-------ELHPSCAGTH----ITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 582 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
.+..|..++...|++++++...+.++ +++.+....| .+-+.++...|+.++|...|+...
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 33445555555566555555444444 3444333333 345667778899999988887653
No 398
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.34 E-value=1.6e+02 Score=29.21 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=73.8
Q ss_pred hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHh---cCCHHHHH
Q 005329 493 SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVP-SKEHYGCMIDLLCR---AGRLSDAE 568 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~ 568 (702)
.+.-+.+++++.+.+ +-+......++..+.+..+.+...+-|+.+... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 355677888877762 334556777888888888888888888888765 34 46667666665443 22455555
Q ss_pred HHHHhCCC-------C------C----CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005329 569 NMIENMPH-------Q------K----DDV---VWSTLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 569 ~~~~~~~~-------~------p----~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
.+|.+... . + ... .+..+...+...|-.+.|..+++.+++.+
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55544322 1 1 111 22233334568999999999999999987
No 399
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.06 E-value=1.8e+02 Score=30.12 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=78.6
Q ss_pred HHHhhhcCCChhHHHHHhccCCCCCcc--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHHhccC
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPLRNVV--SWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSY---TFAIVLKASADSG 223 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~ 223 (702)
.+...++.|+.+-+.-+++.=..++.. ...+.+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|
T Consensus 38 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~ 113 (413)
T PHA02875 38 PIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILK 113 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhC
Confidence 334444556666555555432222211 11223455556777766555544 33211110 0112333344456
Q ss_pred ChHHHHHHHHHHHHhCCCCchhH--HHHHHHHhhhCCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCChhHHHHHH
Q 005329 224 ALNFGREIHTIMLKRGFDVVSFV--ANSLATMYSKCGKLDYSLRLFERMSTR---DVISWTTIITSYVQMGEEENAFDAF 298 (702)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 298 (702)
+.+ +.+.+.+.|..|+... -.+.+...+..|+.+-+..+++.-... |..-++.+.. .+..|+.+ +.
T Consensus 114 ~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv 184 (413)
T PHA02875 114 KLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII-AMAKGDIA----IC 184 (413)
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HH
Confidence 553 4455556665554321 123344555667777666666543322 2222333332 23344433 44
Q ss_pred HHHHHCCCCCChhhH---HHHHHHHHccCchHHHHHHHHHHHHhCCCCc
Q 005329 299 VRMQESDVKPNEYTF---AAIISASANLARIQWGEQLHAHVLRLGLVDS 344 (702)
Q Consensus 299 ~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (702)
+.+.+.|..|+...- .+++...+..|+.+ +.+.+.+.|..++
T Consensus 185 ~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 445556655543321 23333334445443 3333444554443
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.54 E-value=2.7e+02 Score=31.44 Aligned_cols=85 Identities=11% Similarity=0.064 Sum_probs=48.6
Q ss_pred hhCCChHHHHHHHhccC----CCCc-------chHHHHHH-HHHhcCChhHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 005329 255 SKCGKLDYSLRLFERMS----TRDV-------ISWTTIIT-SYVQMGEEENAFDAFVRMQES----DVKPNEYTFAAIIS 318 (702)
Q Consensus 255 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~ 318 (702)
....++++|..++.++. .|+. ..|+.+-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44567777777766543 2221 13444422 334567777777776665443 12334445555666
Q ss_pred HHHccCchHHHHHHHHHHHHh
Q 005329 319 ASANLARIQWGEQLHAHVLRL 339 (702)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~ 339 (702)
+..-.|++++|..+.....+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 666677777777777666554
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.70 E-value=1.5e+02 Score=28.28 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=21.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 005329 282 ITSYVQMGEEENAFDAFVRMQESDVKPNEYTF 313 (702)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 313 (702)
.+...+.+++++|+..+.+...+|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34455667777888888887777776665544
No 402
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.85 E-value=3.3e+02 Score=31.86 Aligned_cols=155 Identities=11% Similarity=0.014 Sum_probs=85.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHchhCCCCCCHHHHHHHHHH
Q 005329 443 ERTAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQE-AIHLFEKVPMVGLRPDSVTFMGVLTA 521 (702)
Q Consensus 443 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~ 521 (702)
.++..+-...+.++.+.+..+. +......++...-...+.++...+..+. +...+..+.. .+|...-...+.+
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~a 798 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAA 798 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3444444555555555444322 2333445566666666666666654432 3344444442 4556666666777
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
+...|..+.+...+..+.+ .++..+-...+.++.+.+. +++...+..+...|+...-...+.++.+.+....+..
T Consensus 799 Lg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~ 873 (897)
T PRK13800 799 LAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARD 873 (897)
T ss_pred HHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHH
Confidence 7776665544333433332 2454555556666666665 4566666666666777776667777666533445666
Q ss_pred HHHHHHH
Q 005329 602 TAEKILE 608 (702)
Q Consensus 602 ~~~~~~~ 608 (702)
.+..+++
T Consensus 874 ~L~~al~ 880 (897)
T PRK13800 874 ALTTALT 880 (897)
T ss_pred HHHHHHh
Confidence 6665555
No 403
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=60.76 E-value=35 Score=32.27 Aligned_cols=61 Identities=21% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKG 644 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 644 (702)
+.+-.++.+.++++.|....++.+.++|+++.-..--|.+|.+.|.+.-|++-++...+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 4455668899999999999999999999999999999999999999999999888866643
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.47 E-value=84 Score=26.03 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 598 CGRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 598 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
.+.++|+.+...+ -..+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888888754 667788888999999999999999988753
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.43 E-value=1e+02 Score=28.57 Aligned_cols=114 Identities=9% Similarity=-0.006 Sum_probs=79.5
Q ss_pred HHHcCChHHHHHHHHHchhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCH
Q 005329 487 YAEHGYSQEAIHLFEKVPMVGLRPDSVT-FMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRL 564 (702)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 564 (702)
|....+++.|+..|.+.+. +.|+..+ |..=+-++.+..+++.+.+=-.... .+.|+ +.....+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4556678999998877775 5787754 4555666777888888877666665 56787 44445567778888899
Q ss_pred HHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005329 565 SDAENMIENMPH-------QKDDVVWSTLLRACMVQGDVNCGRHTAEK 605 (702)
Q Consensus 565 ~~A~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 605 (702)
++|+..+++... .+....+..|..+-...=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999998888733 34556777777775555556666665554
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.20 E-value=1.1e+02 Score=29.67 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=27.2
Q ss_pred HHHHHHHcCChHHHHHHHHHchhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHH
Q 005329 483 MINGYAEHGYSQEAIHLFEKVPMVGLRPDS---VTFMGVLTACSHAGLVDLGFHYFN 536 (702)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~ 536 (702)
|.-+-.+.|+..+|.+.|+.+.+. .|-. .....|+.+|....-+.+...++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567777777777666543 1211 123446666665554444444443
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.14 E-value=68 Score=24.34 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=28.1
Q ss_pred hcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005329 458 KCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAI 497 (702)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 497 (702)
..|+.+.|.+++..++ ..+..|..+++++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777777655543
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.97 E-value=3.3e+02 Score=31.23 Aligned_cols=286 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHhhccCccccccccccCcccCchhhhhHHHHHHccCChHHHHHHhhcCCCCCcchHHHHHHHHHc
Q 005329 5 STRHRVGRLFASSAIACTERRPLLLFQGTQLPVYVSTPEVNSQLKHLVKSGYLHDARKMFDTMTQRDEISWTTLISGYVK 84 (702)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 84 (702)
+....+...+.+.|..|-..-+ ...-+.+++.=...-.+++...++.+... |..|+.-|..
T Consensus 456 ~~~~~~~~~IDttLlk~Yl~~n--------------~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~ 516 (877)
T KOG2063|consen 456 SDLNDILELIDTTLLKCYLETN--------------PGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYAT 516 (877)
T ss_pred cchHHHHHHHHHHHHHHHHhcC--------------chhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHh
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHH
Q 005329 85 AMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCR 164 (702)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 164 (702)
.|..++|+.+|.+. .-.+. .......+.-..+.+.+.+.+.+...-.+....-.+. .+.+...+
T Consensus 517 kg~h~~AL~ll~~l----~d~~~----------~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~--~~p~~gi~ 580 (877)
T KOG2063|consen 517 KGMHEKALQLLRDL----VDEDS----------DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN--KNPEAGIQ 580 (877)
T ss_pred ccchHHHHHHHHHH----hcccc----------ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc--cCchhhee
Q ss_pred HhccCCCCCcchHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCC
Q 005329 165 VFDEMPLRNVVSWTAI-ITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGA-LNFGREIHTIMLKRGFDV 242 (702)
Q Consensus 165 ~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~ 242 (702)
+|-.-.+....+.+.- +-.|+....++-++..++.+....-.++..-.+.++..|+..=+ ......--++..+.+
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~--- 657 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT--- 657 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh---
Q ss_pred chhHHHHHHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005329 243 VSFVANSLATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 243 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
+...+..+....+.=....+++......-.-..+++.+ +.|+-++|+.++-....
T Consensus 658 ----~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~------------------- 712 (877)
T KOG2063|consen 658 ----VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHELD------------------- 712 (877)
T ss_pred ----HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHhc-------------------
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005329 323 LARIQWGEQLHAHVLRLGLVDSLSVANSIMAMYS 356 (702)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (702)
+++.|..+.....+ ..+++...|..++..|.
T Consensus 713 --d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 713 --DIDAAESYCLPQYE-SDKTNKEIYLTLLRIYL 743 (877)
T ss_pred --chhHHHHHHHHhcc-CCCcccHHHHHHHHHHh
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.60 E-value=50 Score=25.02 Aligned_cols=66 Identities=6% Similarity=0.042 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHH
Q 005329 127 GESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGL 194 (702)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 194 (702)
+.++++...+.|+ .+......+..+-...|+.+.|..+++.++ +.+..|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3456666666663 233333333333335578888888888888 77778888888888777665553
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.23 E-value=1.2e+02 Score=28.91 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=37.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---
Q 005329 383 IGGYSQGGYEEEAFEYLALMRR--EGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYS--- 457 (702)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 457 (702)
|.+++..+++.+++...-+--+ ..++|.. ...-|-.|.+.+....+.++-..-.+..-+-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4555566666665554333222 1122222 22222334455555555554444433332333333444444443
Q ss_pred --hcCCHHHHHHHH
Q 005329 458 --KCGSIKEASQIF 469 (702)
Q Consensus 458 --~~g~~~~A~~~~ 469 (702)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 346666666554
No 411
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.12 E-value=1.2e+02 Score=25.81 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHH
Q 005329 176 SWTAIITGLVRAGHNKEGLIYFAEMWRSK-----EQGDSYTFAIVLKASADSGA-LNFGREIHTIMLKRGFDVVSFVANS 249 (702)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (702)
..|+++.-....+++...+.+++.+.... -..+...|.+++++.+.... --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46788888888888888888888774321 13466789999999977766 5567888999998888999999999
Q ss_pred HHHHhhhCC
Q 005329 250 LATMYSKCG 258 (702)
Q Consensus 250 li~~~~~~g 258 (702)
++.++.+..
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 999887653
No 412
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.48 E-value=29 Score=33.10 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhH
Q 005329 560 RAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTH 617 (702)
Q Consensus 560 ~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 617 (702)
+.|+.++|..+|+.+.. +.++..+..++...-..++.-+|.++|-+++...|.|...+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 44555555555555444 22333444444444444555555555555555555554443
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.97 E-value=81 Score=30.01 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhc
Q 005329 76 TTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTK 155 (702)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 155 (702)
..-|++++..+++.+++...-+..+.+. ...+.+...-|-.|.+.+....+.++-...++..-.-+..-|.++...|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pE-klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPE-KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3457888899999998866555543321 122233333344455666666666655555554322233335555544433
Q ss_pred -----CCChhHHHHHh
Q 005329 156 -----LGKIELGCRVF 166 (702)
Q Consensus 156 -----~g~~~~A~~~~ 166 (702)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 35555555555
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.62 E-value=41 Score=30.38 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005329 577 QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHP 611 (702)
Q Consensus 577 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 611 (702)
.|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 67777777777777777888888888777777777
No 415
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.28 E-value=1e+02 Score=23.68 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhcCChH
Q 005329 579 DDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSC--AGTHITLANIYAAKGRWR 631 (702)
Q Consensus 579 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 631 (702)
|......+...+...|+++.|.+.+-.++..+|.. ...-..|+.++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 44566666677777777777777777777766443 455566666666666543
No 416
>PRK09169 hypothetical protein; Validated
Probab=53.03 E-value=6.1e+02 Score=32.55 Aligned_cols=366 Identities=12% Similarity=0.016 Sum_probs=189.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH---C----CCCCChhhHHHHHHHHHccCchHHHHHHHHHHHH-------hC
Q 005329 275 VISWTTIITSYVQMGEEENAFDAFVRMQE---S----DVKPNEYTFAAIISASANLARIQWGEQLHAHVLR-------LG 340 (702)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~ 340 (702)
......+++++.|-.+-+.+...-..+-. . ....|...+...++++++-.+-+.+......+-. ..
T Consensus 246 ~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~ 325 (2316)
T PRK09169 246 AQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLL 325 (2316)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhh
Confidence 33455566666665554433332222211 0 0124556666777777776554433322222111 11
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHH----HHhcCC-------CCChhhHHHHHHHHHcCCChHH----HHHHHHHHHHC
Q 005329 341 LVDSLSVANSIMAMYSKCGQLTSTSI----VFHGMI-------RRDIISWSTIIGGYSQGGYEEE----AFEYLALMRRE 405 (702)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~-------~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~ 405 (702)
-..+..-....+++++|..+.+.+.. +-+.+. .-+..-....+.+++|-++.+. +..+...+...
T Consensus 326 ~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~ 405 (2316)
T PRK09169 326 QAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARD 405 (2316)
T ss_pred hhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhc
Confidence 12344445556677777666554322 222221 1255556667778887665442 22233333221
Q ss_pred -C--CCCCHHHHHHHHHHHcccCcHHHHHHHHHHHH---Hh----CCCCChhHHHHHHHHHHhcCCHHHH----HHHHhh
Q 005329 406 -G--PRPNEFAFASVLSVCGNMAILEQGKQIHAHVM---SI----GLERTAMIKSALINMYSKCGSIKEA----SQIFYE 471 (702)
Q Consensus 406 -g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~----~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~ 471 (702)
+ -.-|..-....+++|++.+.-+.+......+. .. .-..+..-....+.+++|-++-+.+ ..+...
T Consensus 406 ~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~r 485 (2316)
T PRK09169 406 AGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAAR 485 (2316)
T ss_pred hhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 22466677788888888876554433322221 11 1233455566677778776654422 223332
Q ss_pred CC-------CCCHHHHHHHHHHHHHcCChHHHHH----HHHHchhC---CCCCCHHHHHHHHHHHhccCcHHHH----HH
Q 005329 472 TE-------SDDIVSWTAMINGYAEHGYSQEAIH----LFEKVPMV---GLRPDSVTFMGVLTACSHAGLVDLG----FH 533 (702)
Q Consensus 472 ~~-------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~A----~~ 533 (702)
+. .-+..-....+.++.+-++.+.+.. +...+... --.-|..-+.+.+.++++-.+.+.+ ..
T Consensus 486 l~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~a 565 (2316)
T PRK09169 486 LAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEA 565 (2316)
T ss_pred HhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 22 1245566777888888777655432 22222211 1123556677888888887664332 23
Q ss_pred HHHHhHHhhC--CCCChhhHHHHHHHHHhcCCHHH----HHHHHHhCCCC------CCHHHHHHHHHHHHhcCCHHHHHH
Q 005329 534 YFNLMSDKYG--FVPSKEHYGCMIDLLCRAGRLSD----AENMIENMPHQ------KDDVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 534 ~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~------p~~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
+...+..+.+ -..+.......++++.+-+.... |..+...+... -+..-+..+++++.+-.+.+....
T Consensus 566 LA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~ 645 (2316)
T PRK09169 566 LAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQ 645 (2316)
T ss_pred HHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHH
Confidence 3333322211 12345667778888888775432 33344443332 366777888899888887766555
Q ss_pred HHHHHHHh--------CCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 602 TAEKILEL--------HPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 602 ~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
....+-+. .--++..+.++.+++.+-.+...+.+....+
T Consensus 646 Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 646 AAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444331 1234566677778888877766544444433
No 417
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.84 E-value=2.9e+02 Score=28.72 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=30.3
Q ss_pred HHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005329 379 WSTIIGGYSQ---GGYEEEAFEYLALMRREGPRPNEFAFASVLSVC 421 (702)
Q Consensus 379 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (702)
+..++.++.+ .++++.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4445555554 578999999999999999888765555444444
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.13 E-value=52 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005329 543 GFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 543 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 576 (702)
...|++.+|..++.++...|+.++|.+..+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467777777777777777777777777666654
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.71 E-value=3.1e+02 Score=28.76 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhc-CCCchhHHHHHHHhhhcCCChhHHHHHhcc
Q 005329 90 EALALFSRVWVEPQMNMDPFILSLALKACALNVNVNYGESLHGYTVKTG-FVNSVFVGSALLDMYTKLGKIELGCRVFDE 168 (702)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 168 (702)
....+|+....+ .+-|...|..-+..|.+.+.+.+...++..|+... ..|+..++.+.-. |-...+++.|..+|..
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHH
Confidence 445566666544 35588899999998888888999999999988754 4566666554433 3444458888888876
Q ss_pred CC
Q 005329 169 MP 170 (702)
Q Consensus 169 ~~ 170 (702)
-.
T Consensus 166 gL 167 (568)
T KOG2396|consen 166 GL 167 (568)
T ss_pred Hh
Confidence 54
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.66 E-value=86 Score=33.13 Aligned_cols=134 Identities=17% Similarity=0.077 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHhCCC-CC--CHHH
Q 005329 509 RPDSVTFMGVLTACSHA--GLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLL-CRAGRLSDAENMIENMPH-QK--DDVV 582 (702)
Q Consensus 509 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~-~p--~~~~ 582 (702)
-|+..+...++.-...- ...+-+-.++..|. + .+.|--.+.|. ...| ...|+...|...+..+.. .| ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555555544333221 22344555555553 2 23333222222 2233 346899999999888765 44 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 583 WSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 583 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
.-.|.+...+.|-...|-.++.+.+.+....+-++..++++|....+.+.|++.++.+.+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 667888888889999999999999999987888999999999999999999999998877543
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.36 E-value=1.2e+02 Score=24.96 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=40.8
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 005329 497 IHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI 555 (702)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 555 (702)
.+-+..+..-.+.|++......+++|.+.+|+..|..+|+.+..+ +.+....|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 334445555567899988889999999999999999999988655 333344455544
No 422
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=2.4e+02 Score=26.75 Aligned_cols=126 Identities=9% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 564 LSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVN-CGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 564 ~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
..+-+++++++.. +.+-..|..--......|+.. .-++..+.|+..+..|-.+|..--|++..-+.+++-+.+-.++
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555666666655 445666655444445566666 7788999999999889999999999999999999999999999
Q ss_pred HhCCCccCCeeeEEEECCEEEEEEcCCCCCCChhHHHHHHHHHHHHhcCCCCCCc
Q 005329 641 RSKGVIKEPGWSRIKVKDQVSAFVSSDRRHSQGEDIYRMLDLLASRESDIDDLDS 695 (702)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~ 695 (702)
.+..+..+++|..-- +.+..... --....+.+.+..+.+++.-.|+.++
T Consensus 174 le~Di~NNSAWN~Ry-----fvi~~~~~-~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRY-----FVITNTKG-VISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred HHHhhhccchhheee-----EEEEeccC-CccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 999888888775321 11111111 12235667778888887777777654
No 423
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.75 E-value=1e+02 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHH
Q 005329 565 SDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWRE 632 (702)
Q Consensus 565 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 632 (702)
+.|.++.+-|- ...............|++.-|.++.+.++..+|+|...-...+.+|.+.|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34555555543 233344455566789999999999999999999999999999988887765443
No 424
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.57 E-value=2.6e+02 Score=27.07 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHcCCChHHHH
Q 005329 377 ISWSTIIGGYSQGGYEEEAF 396 (702)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~ 396 (702)
-.|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45777777777777766543
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.20 E-value=1.6e+02 Score=24.40 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 005329 530 LGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIEN 573 (702)
Q Consensus 530 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (702)
.+.++|+.|..+ |+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777666 66555 56667777777777787777777764
No 426
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.47 E-value=45 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.+|..|+.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888999999988888877654
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.21 E-value=2.6e+02 Score=26.70 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHHccCchH-HHHH
Q 005329 257 CGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAF----VRMQESDVKPNEYTFAAIISASANLARIQ-WGEQ 331 (702)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~ 331 (702)
++++++|.+++..- ...+.+.|+...|-++- +-..+.+.++|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666654321 23344455544433332 22333455555555555555444332211 2333
Q ss_pred HHHHHHHh---CC--CCchHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 005329 332 LHAHVLRL---GL--VDSLSVANSIMAMYSKCGQLTSTSIVFHGMIRR 374 (702)
Q Consensus 332 ~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (702)
+.+.+.+. +- .-++.....+...|.+.|++.+|+..|-.-..+
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 33333332 21 235677788888888889888888777544333
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.13 E-value=25 Score=33.49 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=41.6
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 005329 522 CSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK 578 (702)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p 578 (702)
..+.|+.++|..+|+.+. .+.|+ +....-+.......++.-+|-.+|-++.. .|
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 347899999999999887 56776 66776777777777788888888877766 44
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.99 E-value=3e+02 Score=27.22 Aligned_cols=110 Identities=15% Similarity=-0.011 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHHhhCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005329 528 VDLGFHYFNLMSDKYGF---VPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAE 604 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 604 (702)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++......++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888887763111 345666667777778888877766667666667788888899999999999999899999
Q ss_pred HHHHhC-CCCchhHHHHHHHHHhcCCh--HHHHHHHH
Q 005329 605 KILELH-PSCAGTHITLANIYAAKGRW--REAAEVRK 638 (702)
Q Consensus 605 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 638 (702)
.++..+ -........+. .+...+.. +.+.++++
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHH
Confidence 998853 22333333333 33323332 55555443
No 430
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.46 E-value=3.3e+02 Score=27.60 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHH-HhcCCHHHHHHHHHhC
Q 005329 519 LTACSHAGLVDLGFHYFNLMSDKYGFVPS--KEHYGCMIDLL-CRAGRLSDAENMIENM 574 (702)
Q Consensus 519 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 574 (702)
+..+.+.|-+..|.++.+-+. .+.|+ +.....+|+.| .++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 334455666666666666555 33444 22223334443 3555555555555543
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.42 E-value=1.1e+02 Score=31.22 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 614 AGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
..+++.+|-+|...+|+.+|++.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.38 E-value=2.3e+02 Score=27.55 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----------cCCHHHH
Q 005329 396 FEYLALMRREGPRPNEFAFASVLSVCGNMAILEQGKQIHAHVMSIGLERTAMIKSALINMYSK----------CGSIKEA 465 (702)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A 465 (702)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+...... |..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 457777777888888888877777777777777888888777653222 4444444432 3555555
Q ss_pred HHHHhhCCCCCHHH
Q 005329 466 SQIFYETESDDIVS 479 (702)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (702)
.++++.-+..|+..
T Consensus 338 mkLLQ~yp~tdi~~ 351 (370)
T KOG4567|consen 338 MKLLQNYPTTDISK 351 (370)
T ss_pred HHHHhcCCCCCHHH
Confidence 55555555444443
No 433
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.65 E-value=1.7e+02 Score=24.14 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005329 599 GRHTAEKILELH--PSCAGTHITLANIYAAKGRWREAAEVRK 638 (702)
Q Consensus 599 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (702)
..++|+.+...+ -..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777654 5567788888999999999999998885
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.60 E-value=66 Score=24.88 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELH 610 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 610 (702)
-.+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334555667788888888888887764
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.29 E-value=70 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=20.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005329 286 VQMGEEENAFDAFVRMQESDVKPNEYTFAAIIS 318 (702)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 318 (702)
.+.|-.+++...+++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666777766666666666555443
No 436
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.02 E-value=3.9e+02 Score=28.05 Aligned_cols=98 Identities=7% Similarity=0.014 Sum_probs=70.9
Q ss_pred CCChhh-HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005329 545 VPSKEH-YGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACM--VQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 545 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.|+..+ -+.+++-+.+.|-..+|...+..... +|+...+..++..-. ..=+..-+..+|+.++.....++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 455433 45678888888999999999988877 456667777666532 2224777888888888776678888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 005329 620 LANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
....-...|+.+.+-.++.++.+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 77777788888887777666554
No 437
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.71 E-value=3.2e+02 Score=26.97 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=81.5
Q ss_pred hHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHH
Q 005329 493 SQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH------AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLS 565 (702)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 565 (702)
++++..++++....+ .|.+......|.+|-. .-+|.....+|+.+. .+.|+ +.+.|.-+ ++.+..-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhhHH
Confidence 567888888887776 4877777777766532 246778888888876 35677 34444333 344445567
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCch
Q 005329 566 DAENMIENMPHQKD----DVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAG 615 (702)
Q Consensus 566 ~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 615 (702)
.++.+.+.+...|. ...+..-...+.+.|+.++|...|++++.+-++..+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77888887777542 233444566688999999999999999999875544
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.45 E-value=1.2e+02 Score=26.95 Aligned_cols=67 Identities=7% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhhH-----HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005329 528 VDLGFHYFNLMSDKYGFVPS-KEHY-----GCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQG 594 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 594 (702)
.+.|+-+|+.+.+....+-+ ...- ...+-.|.+.|.+++|.+++++....|+.......+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 45666666666544221100 1111 1234567888999999999888877666555555444444333
No 439
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.24 E-value=63 Score=19.16 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005329 595 DVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 595 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788899999988887 676666554
No 440
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.92 E-value=1.1e+02 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005329 597 NCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEV 636 (702)
Q Consensus 597 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 636 (702)
-.+++.+.+...+.|+.+..+..|+.-+...--|+++..-
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3567788888888888877777776655555555555443
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.22 E-value=2.8e+02 Score=25.85 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=58.0
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 005329 480 WTAMINGYA--EHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDL 557 (702)
Q Consensus 480 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 557 (702)
|..++.++. .++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.... .-.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 334444443 456677777766332 12233221 356666667888888888876521 11112223333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005329 558 LCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQG 594 (702)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 594 (702)
...+.+.+|..+.+....+-....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 566888888888777765333456666666665433
No 442
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.14 E-value=2.2e+02 Score=31.16 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=22.3
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 005329 163 CRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHT 233 (702)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 233 (702)
..++.+.+-++...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|...+..+.+.|+...+..+-+
T Consensus 394 ~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 394 EELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3334444433434444455555555555555555554422211 11234444444444444444443333
No 443
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.06 E-value=3e+02 Score=26.11 Aligned_cols=182 Identities=8% Similarity=0.042 Sum_probs=112.2
Q ss_pred cCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHHHH---hC--CCCChhHHHHHHHHHHhc
Q 005329 388 QGGYEEEAFEYLALMRREGPRP---NEFAFASVLSVCGNMAILEQGKQIHAHVMS---IG--LERTAMIKSALINMYSKC 459 (702)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~ 459 (702)
+..++++|+.-|.+..+....- .......++....+.+++++....+.++.. +. -..+....|++++..+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3458899999999987743222 233455667788888999888887777653 21 233566677777777766
Q ss_pred CCHHHHHHHHhhCCC-----CCH----HHHHHHHHHHHHcCChHHHHHHHHHchhCCCC----CC-------HHHHHHHH
Q 005329 460 GSIKEASQIFYETES-----DDI----VSWTAMINGYAEHGYSQEAIHLFEKVPMVGLR----PD-------SVTFMGVL 519 (702)
Q Consensus 460 g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~~~~~ll 519 (702)
.+.+--.++|+.-.+ .+. .+-.-|...|...+.+.+..++++++..+.-. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666666555554221 122 13345667777778888888888777643111 11 12455666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHHHH----HHHHhcCCHHHHHH
Q 005329 520 TACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMI----DLLCRAGRLSDAEN 569 (702)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~ 569 (702)
..|....+-..-..+|++...-..-.|.+.....+- .+..+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 677777777777777776654434456655554432 23456778877754
No 444
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.96 E-value=54 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 615 GTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
......+..|...|++++|.++++.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455566666666666666666554
No 445
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.62 E-value=2.4e+02 Score=29.27 Aligned_cols=48 Identities=8% Similarity=-0.019 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005329 188 GHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKR 238 (702)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 238 (702)
+.+++-+++++.+.+.| .+| ....-|++|.+.++++.|...+++-.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 34567777777777764 223 3444577888888888888888877664
No 446
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.33 E-value=1.8e+02 Score=23.25 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=20.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCC
Q 005329 456 YSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVG 507 (702)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (702)
+.+.|++++|+..=.....||...|-+|. -.+.|-.+++...+.++..+|
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 44455555553333333345555554432 234455555555555554433
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.58 E-value=1.8e+02 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.488 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchh
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPM 505 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (702)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.83 E-value=95 Score=20.40 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005329 223 GALNFGREIHTIMLKRGFDVVSFVANSLA 251 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li 251 (702)
|-++++...++.|.+.|+..+...+..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44444555555555555544444444443
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.29 E-value=1.9e+02 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRR 404 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (702)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578889999999999999999998876
No 450
>PRK09857 putative transposase; Provisional
Probab=40.09 E-value=1.5e+02 Score=28.95 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
..++......|+.++-.++++.+.+..|...+...+++.-+.+.|+.+++.+..++|...|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444566777777778877777777777788889999999998888999999998888754
No 451
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.98 E-value=2.8e+02 Score=24.90 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=14.9
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHh
Q 005329 315 AIISASANLARIQWGEQLHAHVLRL 339 (702)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~~~~~ 339 (702)
+++-.|.+.-++.++.++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666554
No 452
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.80 E-value=1.6e+02 Score=24.31 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005329 194 LIYFAEMWRSKEQGDSYTFAIVLKASADSGALNFGREIHTIMLKR 238 (702)
Q Consensus 194 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 238 (702)
.+-+..+..-.+.|++......+++|.+.+++..|.++|+.++..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344444445556677777777777777777777777777666544
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.06 E-value=4.4e+02 Score=26.86 Aligned_cols=54 Identities=15% Similarity=-0.073 Sum_probs=30.9
Q ss_pred HHHHHHcCChHHHHHHHHHchhCCCCCCHHHH----HHHHHHHh--ccCcHHHHHHHHHH
Q 005329 484 INGYAEHGYSQEAIHLFEKVPMVGLRPDSVTF----MGVLTACS--HAGLVDLGFHYFNL 537 (702)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~--~~g~~~~A~~~~~~ 537 (702)
+..+.+.+++..|.++|+++.+...+|....+ ..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33556677888888888888776554444332 23333332 23455666666654
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.79 E-value=3.8e+02 Score=26.08 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhcCCHHHH
Q 005329 550 HYGCMIDLLCRAGRLSDA 567 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A 567 (702)
.|..|+.+++.+|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 467777777777776544
No 455
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.65 E-value=3.6e+02 Score=25.80 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhc
Q 005329 445 TAMIKSALINMYSKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSH 524 (702)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 524 (702)
++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ +...-. .+--|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHH
Confidence 5677777888888889888888877554443333332233322222322222 111112 2223455
Q ss_pred cCcHHHHHHHHHHhHHh
Q 005329 525 AGLVDLGFHYFNLMSDK 541 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~ 541 (702)
.++...|...++...++
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67778787777766544
No 456
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=4.1e+02 Score=26.32 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=22.3
Q ss_pred ccCcHHHHHHHHHHhHHhhC--CCCChhhH--HHHHHHHHhcCCHHHHHHHHHh
Q 005329 524 HAGLVDLGFHYFNLMSDKYG--FVPSKEHY--GCMIDLLCRAGRLSDAENMIEN 573 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~--~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 573 (702)
+.++.++|.++++++.++.. -.|+...| ..++.++...|+..++.+.+++
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34455566666655544321 12232222 2333444455555555554443
No 457
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.14 E-value=42 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=24.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005329 186 RAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKAS 219 (702)
Q Consensus 186 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 219 (702)
..|.-..|..+|+.|++.|.+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677889999999999999985 55565543
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.09 E-value=1.1e+02 Score=23.82 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=16.8
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005329 611 PSCAGTHITLANIYAAKGRWREAAEVRKM 639 (702)
Q Consensus 611 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (702)
+.-|..+.+|+.+|.+.|+-+.|.+-|+.
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 44455556666666666666666555554
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.05 E-value=54 Score=31.59 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005329 176 SWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTF 212 (702)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 212 (702)
-||..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567777777777777777777777777765444444
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.93 E-value=3.3e+02 Score=25.20 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHchhCCCCC---CHHH--HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhhHHH
Q 005329 479 SWTAMINGYAEHGYSQEAIHLFEKVPMVGLRP---DSVT--FMGVLTACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYGC 553 (702)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 553 (702)
-.|.|+--|.-+..+.+|.+.|.+- .|+.| |..+ -..-|......|+++.|++..+.+... -+.-|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 3445555555555555555555432 23444 2222 233455667788888888877776544 33334333332
Q ss_pred HHH----HHHhcCCHHHHHHHHHhCCC
Q 005329 554 MID----LLCRAGRLSDAENMIENMPH 576 (702)
Q Consensus 554 l~~----~~~~~g~~~~A~~~~~~~~~ 576 (702)
|.. -+.+.|..++|+++.+.-..
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 222 24577788888888776543
No 461
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.59 E-value=1.2e+02 Score=32.43 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 553 CMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
.|.-+|....+.|.|.++++++.+ +| ++.+---...+....|+-++|..+......
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 344444555555555555555544 22 222222233344455555555555554443
No 462
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.41 E-value=3.8e+02 Score=25.64 Aligned_cols=155 Identities=11% Similarity=0.023 Sum_probs=74.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccCCc-----hhhhHHHHHHHHhcCCCchhHHHH
Q 005329 74 SWTTLISGYVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKACALNVNV-----NYGESLHGYTVKTGFVNSVFVGSA 148 (702)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ 148 (702)
..+.+++.+.+++...+|+.+.+++... +.=...+..++......... ......+....+.- ..-+ .|-.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l---~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~f~-~~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL---PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QEFP-EYLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC---CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-HcCc-chHH
Confidence 4567788888888888888888888633 33344555555443222111 11122222222210 0011 1222
Q ss_pred HHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC-----ChhhHHHHHHHHhcc
Q 005329 149 LLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEGLIYFAEMWRSK-EQG-----DSYTFAIVLKASADS 222 (702)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-----~~~~~~~ll~~~~~~ 222 (702)
++..|.|.=+...=..+|+....| ..|+..|.+.|+.+.|..++--+...+ ... +...-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333344433333334445544322 255666666677776666655554322 111 122233444555555
Q ss_pred CChHHHHHHHHHHHHh
Q 005329 223 GALNFGREIHTIMLKR 238 (702)
Q Consensus 223 ~~~~~a~~~~~~~~~~ 238 (702)
++++-+.++.+-+...
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 6666666665555543
No 463
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.31 E-value=3.9e+02 Score=25.85 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005329 442 LERTAMIKSALINMYSKCGSIKEASQIFYETE-----SDDIVSWTAMINGYAEHGYSQEAIHLFEK 502 (702)
Q Consensus 442 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (702)
-.++..+...+++.++..+++..-.++++... ..|...|..+|......|+..-..++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34455555566666677777777666666543 23666777777777777776655555543
No 464
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.97 E-value=5e+02 Score=26.95 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhCCChHHHHHHHhcc---CCCCcchHHHHH
Q 005329 206 QGDSYTFAIVLKASADSGALNFGREIHTIMLKRGFDVVSFVANSLATMYSKCGKLDYSLRLFERM---STRDVISWTTII 282 (702)
Q Consensus 206 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 282 (702)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444555554433 6888888888877654421111 11222222211 112223344455
Q ss_pred HHHHh---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005329 283 TSYVQ---MGEEENAFDAFVRMQESDVKPNEYTFAAIISASAN 322 (702)
Q Consensus 283 ~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 322 (702)
.++.+ .++++.|+.++..|.+.|..|....-..++.++-.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55554 58899999999999999977765554444444433
No 465
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.35 E-value=39 Score=33.05 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=35.6
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005329 525 AGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QKD-DVVWSTLLRACMVQGDVNCGRH 601 (702)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~ 601 (702)
.|.++.|++.|...++. .|. ...|..=..++.+.++...|++=++.... .|| ...|-.-..+.+..|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34444555544444322 222 33333334444445555555444444433 222 1223233333444555555555
Q ss_pred HHHHHHHhC
Q 005329 602 TAEKILELH 610 (702)
Q Consensus 602 ~~~~~~~~~ 610 (702)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555544
No 466
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.31 E-value=4.1e+02 Score=25.75 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=83.0
Q ss_pred CCHHHHHHHHhhCCCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHchhCCCCCCHHHHHHHHHHHhcc-------Cc
Q 005329 460 GSIKEASQIFYETESD-DIVSWTAMINGYAE----HGYSQEAIHLFEKVPMVGLRPDSVTFMGVLTACSHA-------GL 527 (702)
Q Consensus 460 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------g~ 527 (702)
.+..+|..+|...-+. .+.....|...|.. ..+..+|..+|++..+.|..+...+...+...+... -+
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 3456666666644432 33344445554444 337788888888888877544322233333333322 13
Q ss_pred HHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------
Q 005329 528 VDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCR----AGRLSDAENMIENMPHQKDDVVWSTLLRACMVQG--------- 594 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 594 (702)
...|...|.++... + +......+...|.. ..+.++|..+|.......+......+. .+...|
T Consensus 171 ~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhc
Confidence 34688888887655 3 44455555555543 347888999998887755544444444 444444
Q ss_pred ------CHHHHHHHHHHHHHhCC
Q 005329 595 ------DVNCGRHTAEKILELHP 611 (702)
Q Consensus 595 ------~~~~A~~~~~~~~~~~p 611 (702)
+...|...+....+..+
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 55556666666555543
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.06 E-value=1.8e+02 Score=29.85 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 005329 348 ANSIMAMYSKCGQLTSTSIVFHGMIR-----------RDIISWSTIIGGYSQGGYEEEAFEYLALMR 403 (702)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 403 (702)
...|++.++-.|++..|+++++.+.- -.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888777621 144566667777888888888888887664
No 468
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=2.9e+02 Score=28.05 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=74.8
Q ss_pred HHHHHHHHHHH--HHcCChHHHHHHHHHchhCCCCCCHHHHHHHHH--------HHhccCcHHHHHHHHHHhHHhhCCCC
Q 005329 477 IVSWTAMINGY--AEHGYSQEAIHLFEKVPMVGLRPDSVTFMGVLT--------ACSHAGLVDLGFHYFNLMSDKYGFVP 546 (702)
Q Consensus 477 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--------~~~~~g~~~~A~~~~~~~~~~~~~~p 546 (702)
+.+|--++..+ ...+++.+|..+-+.....-..-|..++..+.. ++...|+...-..++......-.+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 44555554443 345778888887776654433445555554332 22344555555555555444323443
Q ss_pred C----hhhHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005329 547 S----KEHYGCMIDLLCRAGRLSDAENMIENMPHQ--KDDVVW----STLLRACMVQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 547 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 612 (702)
| ....|.|++.|...+.++.|..+..+..-+ .+..-| --++..-.-++++..|.+.+-.++...|+
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4 333455666667777777777777766541 111111 11233334567777777777777777775
No 469
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.57 E-value=73 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005329 378 SWSTIIGGYSQGGYEEEAFEYLALMRREGPRPNEFAFAS 416 (702)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 416 (702)
-|+.-|..-.+.||+++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888899999999999999999887765555544
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.76 E-value=5.1e+02 Score=26.42 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHchh
Q 005329 449 KSALINMYSKCGSIKEASQIFYETES------DDIVSWTAMINGYAEHGYSQEAIHLFEKVPM 505 (702)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (702)
+.-+.+.|..+|+++.|.+.|.+.+. .-+..|-.+|.+-.-.|++........+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44567777888888888888877553 1334566666666667777776666665554
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.72 E-value=1.1e+02 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 005329 553 CMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
.|...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666666666666666665
No 472
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.33 E-value=3.9e+02 Score=24.91 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHch
Q 005329 451 ALINMYSKCGSIKEASQIFYETESD--DIVSWTAMINGYAEHGYSQEAIHLFEKVP 504 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (702)
.++..+...|+.+.|..+++.+..+ +......++.. ..++...+|+.+-+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 3555555566666666666665532 22223333333 44566666666555544
No 473
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=33.98 E-value=2.2e+02 Score=29.82 Aligned_cols=57 Identities=11% Similarity=0.231 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005329 549 EHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHTAEKILE 608 (702)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 608 (702)
..|..++.-|...++|++|.++.+-.. ....|.++......+.+..-++..|-.+.+
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~ 630 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQ 630 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhc
Confidence 344455555566666666666655443 334555555554455554444444444433
No 474
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.79 E-value=4e+02 Score=24.88 Aligned_cols=34 Identities=3% Similarity=0.012 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCC
Q 005329 579 DDVVWSTLLRACM---------VQGDVNCGRHTAEKILELHPS 612 (702)
Q Consensus 579 ~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~ 612 (702)
....|..++..+. ..++...|...++++++++|.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3445556666663 445778999999999999983
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=63 Score=35.88 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=31.5
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005329 524 HAGLVDLGFHYFNLMSDKYGFVPSKEHYGCMIDLLCRAGRLSDAENMIENMPHQKDDVVWSTLLRACMVQGDVNCGRHT 602 (702)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 602 (702)
..|+.+.|.+.-..+ -+..+|..|+..-.++|+.+-|+..|++.. .|+-|--.|.-.|+.++-..+
T Consensus 655 e~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred hcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHHH
Confidence 345555555443332 134455555555555555555555555543 233333344455555443333
No 476
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.27 E-value=1.9e+02 Score=23.93 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhcC
Q 005329 587 LRACMVQGDVNCGRHTAEKILELHPSCAGTHITLANIYAAKG 628 (702)
Q Consensus 587 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 628 (702)
-..+...-+.+.|+.+|+++++..|++-..+..++..+....
T Consensus 83 q~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~~ 124 (139)
T PF12583_consen 83 QCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSPE 124 (139)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHS
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcHH
Confidence 334455557799999999999999999999998888776543
No 477
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.23 E-value=79 Score=30.49 Aligned_cols=75 Identities=8% Similarity=0.092 Sum_probs=48.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005329 547 SKEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWST-LLRACMVQGDVNCGRHTAEKILELHPSCAGTHITLA 621 (702)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 621 (702)
|+..|...+.-..+.|.+.+...++.++.. .| +...|-. -..-+...++++.+..++.+.+.++|++|..|....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 455555555544555666666666666555 33 4445433 223355778899999999999999998888776543
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.72 E-value=6.4e+02 Score=26.95 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC
Q 005329 451 ALINMYSKCGSIKEASQIFYETE 473 (702)
Q Consensus 451 ~li~~~~~~g~~~~A~~~~~~~~ 473 (702)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 35666777777777777777765
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.04 E-value=54 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 005329 552 GCMIDLLCRAGRLSDAENMIENM 574 (702)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~ 574 (702)
-.++.+|...|++++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455666666666666665554
No 480
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.95 E-value=5e+02 Score=25.48 Aligned_cols=165 Identities=12% Similarity=0.170 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCC
Q 005329 433 IHAHVMSIGLERTAMIKSALINMYSKCGSIKEASQIFYETES-DDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPD 511 (702)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (702)
+++.+...++-+........++.+.+.+..+-+..++..... .+.. +.+. . +-.+.+.-++++.+. +.|-
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~~----e--kr~~Vla~lkeLe~e-v~pi 92 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NALV----E--KRTEVLAELKELEEE-VAPI 92 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHHH----H--HHHHHHHHHHHHHHH-HHHH
Confidence 344444555556666666677777777888888888777631 1110 0110 0 011122222222211 1110
Q ss_pred HHHH-H-HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH---HhCCCCCCHHHHHH
Q 005329 512 SVTF-M-GVLTACSHAGLVDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMI---ENMPHQKDDVVWST 585 (702)
Q Consensus 512 ~~~~-~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~p~~~~~~~ 585 (702)
...+ + -++.... ........++.+.+++++.|+ ..+.-.+.+....+|++..|-.++ +....+|+....++
T Consensus 93 v~~le~Pd~~~~~~---~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsa 169 (432)
T KOG2758|consen 93 VKVLENPDLIAALR---SDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSA 169 (432)
T ss_pred HHHHcCHHHHHHHH---hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHH
Confidence 0000 0 0112211 122236677788888899998 677777788888899998887763 44555666544444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHh
Q 005329 586 LLRAC---MVQGDVNCGRHTAEKILEL 609 (702)
Q Consensus 586 l~~~~---~~~g~~~~A~~~~~~~~~~ 609 (702)
+-.-+ .-..+++.|.+-+.++.+.
T Consensus 170 lwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 170 LWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 43322 2445788888877777663
No 481
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.93 E-value=1.4e+02 Score=20.95 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=22.7
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHh
Q 005329 82 YVKAMDSIEALALFSRVWVEPQMNMDPFILSLALKAC 118 (702)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 118 (702)
+...|++-+|-++++.+... ...+....+..+|+.+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~-~~~~~~~~lqglIq~A 44 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKA-APGPERDFLQGLIQLA 44 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCC-T-CCHHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHH-CCcchHHHHHHHHHHH
Confidence 45688888888888888754 2233555566666554
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.88 E-value=1.2e+02 Score=23.00 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHH
Q 005329 128 ESLHGYTVKTGFVNSVFVGSALLDMYTKLGKIELGCRVFDEMPLRNVVSWTAIITGLVRAGHNKEG 193 (702)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 193 (702)
..+++.+.+.|+-.. . ..-..-+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~-~---~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP-D---MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH-H---HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666663221 1 1112223445678888888888888888888888888777765444
No 483
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=30.77 E-value=4.8e+02 Score=24.91 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=73.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh-----HHHHHHHHHHHHhCCCCchhHHHH
Q 005329 175 VSWTAIITGLVRAGHNKEGLIYFAEMWRSKEQGDSYTFAIVLKASADSGAL-----NFGREIHTIMLKRGFDVVSFVANS 249 (702)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ 249 (702)
...+.+++.+.+.+....|+.+.+.+... +-=......++......... ......+....+-- .. ...|-.
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~ 158 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLE 158 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHH
Confidence 34567778888878878888877777542 22233333344332211111 11112222222110 00 112333
Q ss_pred HHHHhhhCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-----ChhhHHHHHHHHHcc
Q 005329 250 LATMYSKCGKLDYSLRLFERMSTRDVISWTTIITSYVQMGEEENAFDAFVRMQESD-VKP-----NEYTFAAIISASANL 323 (702)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~t~~~ll~~~~~~ 323 (702)
++..|.|.-+...=..+|+.+..| ..++.-|.+.|+.+.|-.++--+...+ ... +...-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 444444444444444455544322 245556666777776666655554332 111 122233455555666
Q ss_pred CchHHHHHHHHHHHHh
Q 005329 324 ARIQWGEQLHAHVLRL 339 (702)
Q Consensus 324 ~~~~~a~~~~~~~~~~ 339 (702)
++++.+.++.+-+...
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 6666666666665543
No 484
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=30.66 E-value=1.1e+02 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 005329 553 CMIDLLCRAGRLSDAENMI 571 (702)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~ 571 (702)
.|+-+|.+.++.+-|+.-.
T Consensus 233 klv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHhhhhcCCCchHHHHH
Confidence 3455666666666665543
No 485
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.50 E-value=1.1e+02 Score=29.47 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005329 599 GRHTAEKILELHPSCAGTHITLANIYAAKGRWREAAEVRKMMR 641 (702)
Q Consensus 599 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (702)
|++.|.++..+.|.+...|+.||-++...|+.-+|.-++-+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 5677888888888888888888888888777777765555443
No 486
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.10 E-value=5.6e+02 Score=25.44 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh---cCCHHHHHH
Q 005329 528 VDLGFHYFNLMSDKYGFVPS-KEHYGCMIDLLCRAGRLSDAENMIENMPH-QK-DDVVWSTLLRACMV---QGDVNCGRH 601 (702)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~---~g~~~~A~~ 601 (702)
.+.-+.+++++.+. .|+ ......++..+.+..+.++..+-++++.. .| +...|...+..... .-.++....
T Consensus 47 ~E~klsilerAL~~---np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH---NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45667788888765 454 66777788888888888888888998887 34 67889888888764 336778888
Q ss_pred HHHHHHHhC---C--------CCc-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005329 602 TAEKILELH---P--------SCA-------GTHITLANIYAAKGRWREAAEVRKMMRSKGV 645 (702)
Q Consensus 602 ~~~~~~~~~---p--------~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (702)
+|.+.+..- . +-+ ..+..+...+...|-.+.|...++.+.+.++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 888887631 1 111 2344455556788999999999999988655
No 487
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.80 E-value=1.3e+02 Score=29.68 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005329 597 NCGRHTAEKILELHPS---CAGTHITLANIYAAKGRWREAAEVRKMMRSKGVIK 647 (702)
Q Consensus 597 ~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (702)
++...++..++..-|+ .+..|.+++.++...|.+++.+.+|++++..|..|
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
No 488
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.71 E-value=6e+02 Score=25.36 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=18.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005329 207 GDSYTFAIVLKASADSGALNFGREIHTIMLKR 238 (702)
Q Consensus 207 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 238 (702)
||......++++++...........++.+.+.
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQS 259 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcC
Confidence 66666666666666655555554445555544
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.41 E-value=5e+02 Score=24.31 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHchhCCCCCCH
Q 005329 473 ESDDIVSWTAMINGYAEHGYSQEAIHLFEKVPMVGLRPDS 512 (702)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (702)
.+|.+.....++..+. .+++++|.+++.++-+.|+.|..
T Consensus 235 d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 3455655555555443 45677777777777777776654
No 490
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.37 E-value=2.6e+02 Score=21.12 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.2
Q ss_pred HhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChHHH
Q 005329 457 SKCGSIKEASQIFYETESDDIVSWTAMINGYAEHGYSQEA 496 (702)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (702)
+...+.+.|.++++.++..+..+|..+..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888888888777765544
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.11 E-value=3e+02 Score=29.88 Aligned_cols=72 Identities=6% Similarity=-0.039 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHchhCC--CCCCHHHHHHHHHHHhccCcHH------HHHHHHHHhHHhhCCCCChhhHHH
Q 005329 482 AMINGYAEHGYSQEAIHLFEKVPMVG--LRPDSVTFMGVLTACSHAGLVD------LGFHYFNLMSDKYGFVPSKEHYGC 553 (702)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~------~A~~~~~~~~~~~~~~p~~~~~~~ 553 (702)
+|..+|...|++-.+.++++.+.... -+.=...+|..++...+.|.++ .|.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 56677777777777777777666432 1112245666666666666543 223333322 24445556655
Q ss_pred HHHH
Q 005329 554 MIDL 557 (702)
Q Consensus 554 l~~~ 557 (702)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 5544
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.82 E-value=6.7e+02 Score=25.64 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 005329 347 VANSIMAMYSKCGQLTSTSIVFHGMIRR------DIISWSTIIGGYSQGGYEEEAFEYLALMR 403 (702)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 403 (702)
.+.-+.+.|..+|+++.|.+.|.+..+- -+..|-.+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3455666666677777776666663221 12234444444444555555554444443
No 493
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.64 E-value=6.4e+02 Score=25.34 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHhhccCCchhhhHHHHHHHHhcCCCchhHHHHHHHhhhcCCCh----hHHHHHhccCCCCC---cchH
Q 005329 105 NMDPFILSLALKACALNVNVNYGESLHGYTVKTGFVNSVFVGSALLDMYTKLGKI----ELGCRVFDEMPLRN---VVSW 177 (702)
Q Consensus 105 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~---~~~~ 177 (702)
.|++.+...+++-+....+.++.+.+-..... +.+.+-..+.+.+.. .-..+.++.|...+ +...
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H 143 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIH 143 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhH
Confidence 57777777777777666664443332222111 122233333333222 22222333333211 2234
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCChhhHHHHHHH---HhccCChHHHHHHHHHHHH
Q 005329 178 TAIITGLVRAGHNKEGLIYFAEMWR-----SKEQGDSYTFAIVLKA---SADSGALNFGREIHTIMLK 237 (702)
Q Consensus 178 ~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 237 (702)
..++..+.+.+++..+...++.-.. .+.-|-...+.....+ |....+++.|..+++..+-
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 4566666777776665554433211 1111111111111111 3456788888888887765
No 494
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.02 E-value=3.9e+02 Score=25.31 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005329 584 STLLRACMVQGDVNCGRHTAEKILELHPS------CAGTHITLANIYAAKGRWREAAEVRKMM 640 (702)
Q Consensus 584 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (702)
..+...|...|++++|...++.+...... ...+...+..++...|+.++.+.+-=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677799999999999999999665322 2446667888888899998887764443
No 495
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.01 E-value=7e+02 Score=25.54 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=39.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 005329 182 TGLVRAGHNKEGLIYFAEMWRSKEQGDSY--TFAIVLKASA--DSGALNFGREIHTIMLKR 238 (702)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 238 (702)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999876 555554 3444555543 456778888888877665
No 496
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.74 E-value=5.5e+02 Score=24.23 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHH
Q 005329 550 HYGCMIDLLCRAGRLSDAENMIENMPH--QKDDVVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHIT 619 (702)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 619 (702)
.+..+..++...|++-++++-..+... +.+..+|-.-..+....-+.++|.+-+.++++++|.-..+...
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 344556677778888888877777666 3455677666777777778899999999999999855444433
No 497
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.35 E-value=2.7e+02 Score=30.22 Aligned_cols=74 Identities=8% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhhCCChH------HHHHHHhccC-CCCcchHHHHHHH
Q 005329 214 IVLKASADSGALNFGREIHTIMLKRG--FDVVSFVANSLATMYSKCGKLD------YSLRLFERMS-TRDVISWTTIITS 284 (702)
Q Consensus 214 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 284 (702)
+++.+|..+|++..+.++++.+.... -..-...+|..|+...+.|.++ .|.+.+++.. .-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888888888888888888887643 1222345677777777777653 2333333332 2355566666555
Q ss_pred HHh
Q 005329 285 YVQ 287 (702)
Q Consensus 285 ~~~ 287 (702)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 498
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.31 E-value=3.5e+02 Score=24.58 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCchhHHHH-HHHHHhcCChHHHHHHHHHHHh
Q 005329 581 VVWSTLLRACMVQGDVNCGRHTAEKILELHPSCAGTHITL-ANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 581 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
.....++..|...||++.|-++|--++...+-|......+ +.++.+.+.-....++++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3455667777777777777777777777665554433333 4555555555555566666654
No 499
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.25 E-value=50 Score=24.60 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHHhC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005329 592 VQGDVNCGRHTAEKILELH------PSCAGTHITLANIYAAKGRWREAAEVRKMMRS 642 (702)
Q Consensus 592 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (702)
..|+.+.|+..|++.+..- |.. .......|++|..+.++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~---------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP---------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC---------cccccHHHHHHHHHHHHHHH
Confidence 4577888888888776631 211 34455678888888888865
No 500
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=7.2e+02 Score=25.44 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=68.9
Q ss_pred hcCCHHHHHHHHhhCCC----CCHHHHHHHH--------HHHHHcCChHHHHHHHHHchh-CCCCCCH----HHHHHHHH
Q 005329 458 KCGSIKEASQIFYETES----DDIVSWTAMI--------NGYAEHGYSQEAIHLFEKVPM-VGLRPDS----VTFMGVLT 520 (702)
Q Consensus 458 ~~g~~~~A~~~~~~~~~----~~~~~~~~li--------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~----~~~~~ll~ 520 (702)
.+.++.+|..+-+.... -|-.++..+. .+|-..|+...-..++..... ..+.-|. ...|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 45677777776655432 2334443332 233456676666666655443 2233333 45677888
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 005329 521 ACSHAGLVDLGFHYFNLMSDKYGFVPSKEHYG-------CMIDLLCRAGRLSDAENMIENMPH-QKD 579 (702)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~-~p~ 579 (702)
.|...+.++.|..+..+.. -|+...-+ .+.....-++++..|.+.|-.+.. .|.
T Consensus 218 ~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8889999999988877553 34322222 233444557788889888776655 454
Done!