Query 005331
Match_columns 702
No_of_seqs 373 out of 1859
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 100.0 8E-107 3E-111 924.0 56.0 552 4-602 4-577 (579)
2 2hiv_A Thermostable DNA ligase 100.0 8E-101 3E-105 884.0 54.0 550 3-604 17-608 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 5E-100 2E-104 865.9 51.0 528 7-603 4-552 (558)
4 2cfm_A Thermostable DNA ligase 100.0 2E-99 7E-104 864.6 50.4 532 7-602 1-551 (561)
5 1x9n_A DNA ligase I; 5'-adenyl 100.0 1.9E-99 7E-104 878.6 43.3 553 5-604 54-670 (688)
6 1vs0_A Putative DNA ligase-lik 100.0 8.6E-64 2.9E-68 532.3 26.0 307 218-592 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 6.9E-54 2.4E-58 463.9 21.6 304 216-582 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 1.8E-48 6.2E-53 411.8 21.2 265 223-587 2-297 (297)
9 4htp_A DNA ligase 4; helical d 100.0 1.1E-45 3.8E-50 377.8 20.5 215 1-216 8-238 (240)
10 1p16_A GTP--RNA, mRNA capping 100.0 1.4E-35 4.9E-40 325.1 19.5 313 194-603 20-364 (395)
11 1ckm_A MRNA capping enzyme; nu 100.0 9.8E-31 3.3E-35 279.7 18.2 168 242-457 72-248 (330)
12 3vnn_A DNA ligase 4; non-homol 100.0 1E-28 3.5E-33 231.8 9.7 127 247-376 1-135 (139)
13 3kyh_C MRNA-capping enzyme sub 99.9 3.5E-24 1.2E-28 234.7 10.3 186 240-457 60-263 (461)
14 3rtx_A MRNA-capping enzyme; gu 99.9 5.6E-24 1.9E-28 227.3 7.8 177 243-456 61-247 (343)
15 2vug_A PAB1020; RNA, ligase, A 99.5 2.2E-13 7.5E-18 147.9 17.3 156 244-445 94-253 (389)
16 3qwu_A DNA ligase; structural 99.4 1.8E-12 6.2E-17 137.7 16.0 151 238-426 66-222 (370)
17 2ep8_A Pescadillo homolog 1; A 98.0 3.7E-06 1.2E-10 73.7 5.2 48 651-701 7-65 (100)
18 2hvq_A ORF1, hypothetical 37.6 98.0 2.2E-05 7.7E-10 83.5 12.1 107 241-366 25-146 (335)
19 1ta8_A DNA ligase, NAD-depende 98.0 8.8E-06 3E-10 85.9 8.9 172 246-444 114-319 (332)
20 1s68_A RNA ligase 2; ribonucle 98.0 4.1E-05 1.4E-09 78.2 13.0 107 241-366 24-145 (249)
21 2ebw_A DNA repair protein REV1 97.9 1.1E-05 3.6E-10 70.1 5.9 49 652-701 8-57 (97)
22 1b04_A Protein (DNA ligase); D 97.8 1.6E-05 5.3E-10 83.6 6.5 173 245-444 107-313 (318)
23 4id3_A DNA repair protein REV1 97.7 3.3E-05 1.1E-09 66.0 5.8 48 653-701 4-53 (92)
24 4glx_A DNA ligase; inhibitor, 97.6 0.00019 6.6E-09 81.3 10.4 223 245-509 108-368 (586)
25 4glw_A DNA ligase; inhibitor, 97.5 0.00037 1.3E-08 73.0 10.9 167 243-438 100-297 (305)
26 1zau_A DNA ligase; AMP; HET: D 97.5 1.5E-05 5.1E-10 84.0 -0.3 167 245-438 116-319 (328)
27 3uq8_A DNA ligase; adenylated 97.3 0.0014 4.8E-08 68.8 12.7 174 246-444 108-317 (322)
28 1xk5_A Snurportin-1; protein-R 97.3 0.00036 1.2E-08 68.3 7.5 179 225-446 5-186 (204)
29 3gjx_B Snurportin-1; transport 97.2 0.0011 3.8E-08 69.4 9.6 179 225-446 106-287 (365)
30 3jsl_A DNA ligase; NAD+-depend 97.1 0.00081 2.8E-08 70.4 7.8 174 244-444 104-311 (318)
31 1xdn_A RNA editing ligase MP52 97.1 0.00085 2.9E-08 68.2 7.6 120 242-366 30-190 (277)
32 1kzy_C Tumor suppressor P53-bi 97.1 0.00052 1.8E-08 70.4 5.9 52 650-701 9-94 (259)
33 2owo_A DNA ligase; protein-DNA 97.0 0.0028 9.5E-08 73.0 11.9 221 246-509 109-368 (671)
34 2c5u_A RNA ligase, T4 RNA liga 96.9 0.0089 3E-07 64.4 14.1 140 245-444 93-245 (375)
35 1wf6_A Similar to S.pombe -RAD 96.8 0.0015 5.1E-08 59.9 6.3 59 642-701 26-84 (132)
36 2d8m_A DNA-repair protein XRCC 96.8 0.0011 3.7E-08 60.6 4.8 48 653-701 19-66 (129)
37 3l3e_A DNA topoisomerase 2-bin 96.6 0.0011 3.8E-08 58.4 3.7 49 651-700 10-58 (107)
38 3pc6_A DNA repair protein XRCC 96.6 0.002 6.7E-08 56.6 4.8 48 654-701 5-52 (104)
39 3sgi_A DNA ligase; HET: DNA AM 96.6 0.0039 1.3E-07 70.9 8.3 192 246-471 117-348 (615)
40 1dgs_A DNA ligase; AMP complex 96.4 0.0064 2.2E-07 69.9 9.0 192 246-472 110-337 (667)
41 4e6n_A Metallophosphoesterase; 95.8 0.044 1.5E-06 57.7 11.0 182 234-428 67-336 (427)
42 3l46_A Protein ECT2; alternati 95.8 0.004 1.4E-07 55.4 2.8 46 655-701 20-65 (112)
43 3pc7_A DNA ligase 3; DNA repai 95.7 0.0038 1.3E-07 52.9 2.2 47 653-701 13-60 (88)
44 2cou_A ECT2 protein; BRCT doma 95.3 0.0065 2.2E-07 53.7 2.2 47 654-701 10-56 (109)
45 2k6g_A Replication factor C su 94.5 0.056 1.9E-06 47.7 6.0 48 654-701 30-77 (109)
46 3u3z_A Microcephalin; DNA repa 94.4 0.017 5.8E-07 56.6 2.8 47 653-700 116-162 (199)
47 1l7b_A DNA ligase; BRCT, autos 94.2 0.039 1.4E-06 47.1 4.3 48 653-701 4-51 (92)
48 2l42_A DNA-binding protein RAP 93.9 0.031 1.1E-06 47.6 2.9 39 654-692 9-51 (106)
49 2ebu_A Replication factor C su 93.8 0.082 2.8E-06 46.8 5.7 48 654-701 20-67 (112)
50 2hiv_A Thermostable DNA ligase 93.6 0.049 1.7E-06 62.6 5.0 88 122-209 19-121 (621)
51 3olc_X DNA topoisomerase 2-bin 93.3 0.046 1.6E-06 57.0 3.8 47 654-701 103-149 (298)
52 2nte_A BARD-1, BRCA1-associate 93.3 0.081 2.8E-06 51.9 5.4 36 654-689 102-137 (210)
53 2jw5_A DNA polymerase lambda; 93.1 0.021 7E-07 50.2 0.5 50 652-701 7-57 (106)
54 1t15_A Breast cancer type 1 su 92.7 0.1 3.5E-06 51.0 5.1 41 653-693 112-152 (214)
55 1l0b_A BRCA1; TANDEM-BRCT, thr 91.9 0.14 4.6E-06 50.9 4.8 39 655-693 116-154 (229)
56 2cok_A Poly [ADP-ribose] polym 91.7 0.2 6.7E-06 44.5 5.1 46 654-700 8-53 (113)
57 3sqd_A PAX-interacting protein 89.9 0.44 1.5E-05 47.2 6.4 38 653-691 119-156 (219)
58 3pa6_A Microcephalin; BRCT dom 89.7 0.43 1.5E-05 41.8 5.4 47 655-701 6-55 (107)
59 3olc_X DNA topoisomerase 2-bin 89.4 0.17 5.7E-06 52.8 2.9 47 654-701 197-244 (298)
60 2coe_A Deoxynucleotidyltransfe 89.2 0.29 9.7E-06 43.8 3.9 49 653-701 17-66 (120)
61 3ef0_A RNA polymerase II subun 88.5 0.34 1.2E-05 52.0 4.6 49 653-701 279-330 (372)
62 2cfm_A Thermostable DNA ligase 87.8 0.34 1.2E-05 54.9 4.3 85 125-209 2-100 (561)
63 3ii6_X DNA ligase 4; XRCC4, NH 87.8 0.41 1.4E-05 48.8 4.6 49 653-701 161-218 (263)
64 3gde_A DNA ligase; DNA-binding 87.7 0.51 1.8E-05 53.4 5.7 85 124-208 4-103 (558)
65 3l41_A BRCT-containing protein 86.9 0.55 1.9E-05 46.6 4.8 38 654-691 111-149 (220)
66 3ef1_A RNA polymerase II subun 85.6 0.46 1.6E-05 52.0 3.6 49 653-701 349-400 (442)
67 2etx_A Mediator of DNA damage 84.0 0.99 3.4E-05 44.1 5.0 38 654-692 113-150 (209)
68 1x9n_A DNA ligase I; 5'-adenyl 83.8 0.71 2.4E-05 53.5 4.4 87 121-207 53-156 (688)
69 1z56_C DNA ligase IV; DNA repa 80.5 0.53 1.8E-05 47.7 1.5 49 652-700 156-204 (264)
70 2dun_A POL MU, DNA polymerase 80.5 0.55 1.9E-05 42.5 1.4 49 653-701 7-56 (133)
71 1kzy_C Tumor suppressor P53-bi 67.0 6.6 0.00022 39.6 5.7 38 654-691 153-190 (259)
72 4htp_A DNA ligase 4; helical d 62.4 8.1 0.00028 38.6 5.2 87 121-207 11-133 (240)
73 3al2_A DNA topoisomerase 2-bin 58.1 4.9 0.00017 40.0 2.7 45 654-700 133-181 (235)
74 2k2w_A Recombination and DNA r 52.5 12 0.0004 33.1 3.8 35 653-690 10-44 (118)
75 2owo_A DNA ligase; protein-DNA 48.9 3.6 0.00012 47.3 0.0 48 654-701 595-642 (671)
76 1dgs_A DNA ligase; AMP complex 43.4 5 0.00017 46.1 0.0 47 654-701 585-631 (667)
77 3l2p_A DNA ligase 3; DNA ligas 40.0 71 0.0024 36.0 8.8 87 5-114 116-202 (579)
78 2l5q_A Uncharacterized protein 39.1 30 0.001 31.3 4.3 39 12-64 62-108 (142)
79 3b4u_A Dihydrodipicolinate syn 24.8 1.3E+02 0.0044 30.5 7.0 65 344-425 41-107 (294)
80 3flu_A DHDPS, dihydrodipicolin 22.3 1.2E+02 0.004 30.9 6.2 57 352-425 55-111 (297)
81 2vxb_A DNA repair protein RHP9 22.2 69 0.0024 31.6 4.2 49 652-700 147-209 (241)
82 3qze_A DHDPS, dihydrodipicolin 21.9 1.2E+02 0.0041 31.1 6.2 65 344-425 61-127 (314)
83 3na8_A Putative dihydrodipicol 21.8 1.1E+02 0.0038 31.4 5.9 64 344-424 62-127 (315)
84 3s5o_A 4-hydroxy-2-oxoglutarat 21.5 1.6E+02 0.0055 30.0 7.0 64 344-424 52-117 (307)
85 2ehh_A DHDPS, dihydrodipicolin 20.9 1.3E+02 0.0046 30.4 6.2 65 344-425 38-104 (294)
86 3cpr_A Dihydrodipicolinate syn 20.8 1.4E+02 0.0049 30.4 6.4 65 344-425 54-120 (304)
87 3tak_A DHDPS, dihydrodipicolin 20.2 1.2E+02 0.004 30.8 5.6 57 352-425 49-105 (291)
88 1xky_A Dihydrodipicolinate syn 20.2 1.4E+02 0.0048 30.4 6.2 65 344-425 50-116 (301)
89 3a5f_A Dihydrodipicolinate syn 20.2 1.4E+02 0.0048 30.2 6.2 65 344-425 39-105 (291)
90 3si9_A DHDPS, dihydrodipicolin 20.1 1.3E+02 0.0043 31.0 5.8 57 352-425 70-126 (315)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=8e-107 Score=924.02 Aligned_cols=552 Identities=25% Similarity=0.413 Sum_probs=450.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC----chHhhhHhhcCCCCCCCccccCCCHHHHHHHHHHHhC
Q 005331 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (702)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~----~~~~~~lrLllp~~d~~r~~ygike~~L~k~~~~~~~ 79 (702)
.++|+|++||++|++|++++++.+|+++|++||++|..+ .++||++|||+|+.|+ ++|||+|++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccC--cccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998643 5899999999999984 6999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhc--cCC-CCCCCCHHHHHHHHHHHHhhhchHhHHHHHHHHHHhC
Q 005331 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRR--QGM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (702)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r--~~~-~~~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~ 156 (702)
++.++ ..++ | ..||||.+|..++..+ +.. .+++|||.|||+.|++||..++...+.++|+.|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 99753 3333 3 3599999988876543 222 3579999999999999999999888889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCccccccccccCcCHHHHHhhhCCHHHHHHHHhhhhc---------ccccCCcccCCccccc
Q 005331 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (702)
Q Consensus 157 t~~E~k~l~RiIlk~lriG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~---------~~~~~~i~~~~~~~Pm 227 (702)
||.|+|||+|+|+++||+|+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988864211 1223557889999999
Q ss_pred cccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc-chhhHHHHHHhhc-cccceeeeceEEE
Q 005331 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (702)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~-~~p~l~~~~~~~~-~~~~~ILDGE~v~ 305 (702)
||+++.+++++++++.+ .|++|+||||+|+|+|++|+++++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCCC-CeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 99999999888888754 6999999999999999999999999999999842 2223333333333 2468999999999
Q ss_pred eeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCc
Q 005331 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (702)
Q Consensus 306 ~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (702)
||+.+++++||+.+|...+.. ..+.+++|++|||||+||++|++.||.+||++|++++.+.++++.+..
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~----~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~------- 378 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSE------- 378 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH----CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECC-------
T ss_pred EeCCCCcccCHHHHHHHhhhh----cccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEee-------
Confidence 998778889999987543221 124689999999999999999999999999999999988766654321
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccC---CCcceEEEEEEEec
Q 005331 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYG 462 (702)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~---g~~~DlvVIG~~~G 462 (702)
.....+.++++++|++++++|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||+|+|
T Consensus 379 ----------~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G 446 (579)
T 3l2p_A 379 ----------MKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYG 446 (579)
T ss_dssp ----------EEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECC
T ss_pred ----------eEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEeC
Confidence 223467889999999999999999999999999999988 899999999874 47999999999999
Q ss_pred CCCCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcE
Q 005331 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542 (702)
Q Consensus 463 ~G~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdv 542 (702)
+|+++|.+|+|+||++|+++ +.|+++||||||||++++++|.++|.+++... +...+|.|+... ....||+
T Consensus 447 ~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd~ 517 (579)
T 3l2p_A 447 QGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPDF 517 (579)
T ss_dssp CTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC-----------------------
T ss_pred CCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCcE
Confidence 99999999999999998653 37999999999999999999999999987652 112245576542 3468999
Q ss_pred EEeCCCceEEEEEeeeceeecccccC-CCceeeccEEEEEecCCCccCCCCHHHHHHHHHc
Q 005331 543 WIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 602 (702)
Q Consensus 543 wi~~P~~s~v~ev~a~~~~~~s~~~~-~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~~~ 602 (702)
|+..|+.++|+||+++.. ..|+.|+ .|++||||||.|+|+||+|+||+|++++.+||+.
T Consensus 518 ~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~ 577 (579)
T 3l2p_A 518 IVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQL 577 (579)
T ss_dssp -------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHT
T ss_pred EEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhh
Confidence 984488889999997543 3577775 7999999999999999999999999999999964
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=7.7e-101 Score=883.99 Aligned_cols=550 Identities=26% Similarity=0.471 Sum_probs=471.3
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCchHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHh
Q 005331 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDAL 78 (702)
Q Consensus 3 ~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lrLl----lp~~d~~r~~ygike~~L~k~~~~~~ 78 (702)
...+|+|..||++|++|++|+++.+|+++|.+||.++ .+++++|+++|+ +|+.+. |++|||+++.|++++++++
T Consensus 17 ~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~~-~~~~gi~~~~L~k~~~~~~ 94 (621)
T 2hiv_A 17 RGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFLG-YPELGIGEKFLIKAISIAT 94 (621)
T ss_dssp ----CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGGC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCcCccccc-ccccCCCHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999986 578899999996 677763 4489999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--C-------CCCCCCHHHHHHHHHHHHhhhc---hHhHH
Q 005331 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSEN---RAEKI 146 (702)
Q Consensus 79 ~l~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~--~-------~~~~lTi~eVn~~Ld~La~~~~---~~~k~ 146 (702)
|++++.... .|+ ..||||++|+.+++++.. . .+++|||.+||+.|++||..++ +++|.
T Consensus 95 g~~~~~~~~----~~~------~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~ 164 (621)
T 2hiv_A 95 NTDENSVEN----LYK------TIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKI 164 (621)
T ss_dssp TCCHHHHHH----HHH------HHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CcCHHHHHH----HHH------hcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHH
Confidence 999765432 343 479999999999988752 1 3678999999999999999877 35688
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhhccCccccccccc----c------CcCHHHHHhhhCCHHHHHHHHhhh-hccccc
Q 005331 147 SVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----F------HPDAEDLFNVTCDLKLVCEKLKDR-NQRHKR 215 (702)
Q Consensus 147 ~~l~~ll~~~t~~E~k~l~RiIlk~lriG~~e~~il~~----~------hpda~~~~~~~~dL~~V~~~L~~~-~~~~~~ 215 (702)
.+|..|+.+||+.|++||+|||+++||||+++++|+.+ | |++++++|++++||+.||+.|+++ ..++..
T Consensus 165 ~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~ 244 (621)
T 2hiv_A 165 RLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKT 244 (621)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhccccccHHHHHHHHhcCCCHHHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999984 3 366889999999999999999874 346777
Q ss_pred CCcccCCccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHhhcccc
Q 005331 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295 (702)
Q Consensus 216 ~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~ 295 (702)
..+++|.|++||||++...++++++++++ +|++|+||||+|||+|++|+++++|||||+++|..||++.+.+.+.+...
T Consensus 245 ~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~ 323 (621)
T 2hiv_A 245 LKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK 323 (621)
T ss_dssp CCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS
T ss_pred CCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCc
Confidence 88999999999999999988888888764 79999999999999999999999999999999999999988775555557
Q ss_pred ceeeeceEEEeeCCCCccccccchHHHHHHhhcCC---CCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCC
Q 005331 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG 372 (702)
Q Consensus 296 ~~ILDGE~v~~d~~~~~~~~F~~lq~~~~~~r~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~ 372 (702)
++|||||||+||+.+++++||+.+|.. ++ +... ....+++|++|||||+||+++++.||.+|+++|++++.+. +
T Consensus 324 ~~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~ 400 (621)
T 2hiv_A 324 EFIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D 400 (621)
T ss_dssp SEEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S
T ss_pred CeEEeEEEEEeecCCCCcCCHHHHhhh-cc-ccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-C
Confidence 999999999999777888999888775 21 1110 1235899999999999999999999999999999999764 4
Q ss_pred cccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecC--CCCcccCCCCCCeEEEccccccC-C
Q 005331 373 RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-G 449 (702)
Q Consensus 373 ~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~--ds~Y~~G~Rs~~WlKvK~~y~~~-g 449 (702)
++.+. ....+.+.++++++|++++++|+||||+|++ +|+|+||+|+.+|+|+|++|+++ |
T Consensus 401 ~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~ 463 (621)
T 2hiv_A 401 YVKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMA 463 (621)
T ss_dssp SEEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSC
T ss_pred cEEEe-----------------eeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcC
Confidence 44322 1345678999999999999999999999999 99999999999999999999984 7
Q ss_pred CcceEEEEEEEecCCCCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCc
Q 005331 450 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 529 (702)
Q Consensus 450 ~~~DlvVIG~~~G~G~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~ 529 (702)
+++|+||||+++|+|+++|.+|+|+||++++++ +.|+++|+||||||++++++|.+.+++++... .||.+
T Consensus 464 dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~ 533 (621)
T 2hiv_A 464 DTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV 533 (621)
T ss_dssp EEEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE
T ss_pred ceeEEEEEEEEcCCCCCCCcccceEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCc
Confidence 899999999999999999999999999998653 38999999999999999999999999998652 24432
Q ss_pred ccccCCCCCCCcEEEeCCCceEEEEEeeeceeecccccC---------CCceeeccEEEEEecCCCccCCCCHHHHHHHH
Q 005331 530 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600 (702)
Q Consensus 530 ~~~~~~~~~~pdvwi~~P~~s~v~ev~a~~~~~~s~~~~---------~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~ 600 (702)
. ...+|++||+ |. .|+||+++.. ..|+.|+ .|++||||||.|+|+||+|+||+|++++.+|+
T Consensus 534 ~-----~~~~~~vwv~-P~--~V~EV~~~~~-t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~ 604 (621)
T 2hiv_A 534 N-----SKMEPDIWVE-PV--YVAEIIGSEI-TISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMY 604 (621)
T ss_dssp E-----CSSCCSEEEC-SC--CEEEEEESEE-EEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHH
T ss_pred c-----cCCCceEEec-Cc--eEEEEEEEEE-EcCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHH
Confidence 1 2467999999 74 6999987543 3567787 68899999999999999999999999999999
Q ss_pred HccC
Q 005331 601 HSSN 604 (702)
Q Consensus 601 ~~~~ 604 (702)
+.+.
T Consensus 605 ~~q~ 608 (621)
T 2hiv_A 605 NKQP 608 (621)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 7543
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.7e-100 Score=865.90 Aligned_cols=528 Identities=24% Similarity=0.426 Sum_probs=457.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCc-hHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHhCCC
Q 005331 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMS 81 (702)
Q Consensus 7 ~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~~-~~~~~lrLl----lp~~d~~r~~ygike~~L~k~~~~~~~l~ 81 (702)
|+|..||++|++|++|+++.+|+++|++||.++. ++ +++++++|+ +|+.+ +++|||+++.|++++++++|++
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-chhhHHHHHHHHcCCCCcccc--cceeCcChHHHHHHHHHHHCcC
Confidence 8999999999999999999999999999999984 45 899999997 57766 4689999999999999999999
Q ss_pred cChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhcc--CCCCCCCCHHHHHHHHHHHHhhhc---hHhHHHHHHHHHHhC
Q 005331 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKT 156 (702)
Q Consensus 82 ~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~--~~~~~~lTi~eVn~~Ld~La~~~~---~~~k~~~l~~ll~~~ 156 (702)
....+. .|+ ..||||.+|+.+++++. ...+++|||.+||+.|++||..++ +++|..+|..|+.+|
T Consensus 81 ~~~~~~----~~~------~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~ 150 (558)
T 3gde_A 81 RSEIES----MIR------EYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA 150 (558)
T ss_dssp HHHHHH----HHH------HHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HHH------hcCCHHHHHHHHHhhccCCCCCCCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC
Confidence 875543 343 57999999999987654 223578999999999999999877 477889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCccccccccc----cC--cC-HHHHHhhhCCHHHHHHHHhh-hhcccccCCcccCCcccccc
Q 005331 157 NAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQL 228 (702)
Q Consensus 157 t~~E~k~l~RiIlk~lriG~~e~~il~~----~h--pd-a~~~~~~~~dL~~V~~~L~~-~~~~~~~~~i~~~~~~~PmL 228 (702)
++.|++||+|+|+++||||+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.|++|||
T Consensus 151 ~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~PmL 230 (558)
T 3gde_A 151 TPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMML 230 (558)
T ss_dssp CHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCCE
T ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHhCCCHHHHHHHhccCCchHHHHHHHhhcCcccccccCCCCCCCCCCee
Confidence 9999999999999999999999999976 55 43 57899999999999999875 55567778899999999999
Q ss_pred ccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHhhccccceeeeceEEEeeC
Q 005331 229 AMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDT 308 (702)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGE~v~~d~ 308 (702)
|++..++++.+.++ .+|++|+||||+|||+|++|++|++|||||+++|..||++.+.+...+. .+||||||||+|+
T Consensus 231 A~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~-~~~iLDGElv~~~- 306 (558)
T 3gde_A 231 AQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVK-PGVILDGEVIAVK- 306 (558)
T ss_dssp EEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBC-SSEEEEEEEEEEE-
T ss_pred CCcCCChHHHhhhc--cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCC-CCeEEEeEEEEcC-
Confidence 99998888888877 4799999999999999999999999999999999999999887755454 3499999999994
Q ss_pred CCCccccccchHHHHHHhhcCC---CCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCc
Q 005331 309 SLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (702)
Q Consensus 309 ~~~~~~~F~~lq~~~~~~r~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (702)
.++++||+.+|...++.. .. ..+.+++|++|||||+|| ++++.||.+|+++|++++.+ ++++.+..
T Consensus 307 -~g~~~~F~~L~~r~~~~~-~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~~------- 375 (558)
T 3gde_A 307 -EGKPMPFQHVLRRFRRKH-DVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLAK------- 375 (558)
T ss_dssp -TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEECC-------
T ss_pred -CCcCCCHHHHHHHhcccc-chhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEee-------
Confidence 367789988776543211 00 013579999999999999 99999999999999999975 44443321
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEEEEEecCCC
Q 005331 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR 465 (702)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVIG~~~G~G~ 465 (702)
...+.+.++++++|++++++|+||||+|+++|+|.||+|+.+|+|+||++ +++|+||||+++|+|+
T Consensus 376 ----------~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 376 ----------QIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp ----------EEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTT
T ss_pred ----------eEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCC
Confidence 34567889999999999999999999999999999999999999999974 6899999999999999
Q ss_pred CCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcEEEe
Q 005331 466 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 545 (702)
Q Consensus 466 r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~ 545 (702)
++|.+|+|+||++|+++ +.|+++|+||||||++++++|.+.+++++... ..|++||+
T Consensus 442 r~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~ 498 (558)
T 3gde_A 442 RSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI 498 (558)
T ss_dssp GGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC
T ss_pred ccCccceEEEEEeeCCC-----CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec
Confidence 99999999999998643 38999999999999999999999999887541 23689999
Q ss_pred CCCceEEEEEeeeceeecccccCCCceeeccEEEEEecCCCccCCCCHHHHHHHHHcc
Q 005331 546 SPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (702)
Q Consensus 546 ~P~~s~v~ev~a~~~~~~s~~~~~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~~~~ 603 (702)
|. +|+||+++. +..|+.|++|++||||||+|+|+||+|+||+|++++.+||+.+
T Consensus 499 -P~--lV~EV~~~~-~t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 499 -PK--YVFEVAYQE-IQKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp -SC--CEEEEECSE-EEECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred -Cc--EEEEEEEee-eecCCccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHh
Confidence 74 699998653 2367889999999999999999999999999999999999743
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=2e-99 Score=864.58 Aligned_cols=532 Identities=25% Similarity=0.451 Sum_probs=463.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCchHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHhCCCc
Q 005331 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (702)
Q Consensus 7 ~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lrLl----lp~~d~~r~~ygike~~L~k~~~~~~~l~~ 82 (702)
|+|+.||++|++|++|+++.+|+++|.+||.++ .+++++|+++|+ +|+++ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCCCcccc--ccccCCCHHHHHHHHHHHHCcCH
Confidence 799999999999999999999999999999986 578899999996 67776 46899999999999999999997
Q ss_pred ChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--CCCCCCCHHHHHHHHHHHHhhhc---hHhHHHHHHHHHHhCC
Q 005331 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKTN 157 (702)
Q Consensus 83 ~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~--~~~~~lTi~eVn~~Ld~La~~~~---~~~k~~~l~~ll~~~t 157 (702)
+..+. .| ...||||++|+.++++++. ..+++|||.+||+.|++||..++ +++|..+|..++.+||
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HhcCCHHHHHHHHhccCcCcCcCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 75542 23 3479999999999988753 22478999999999999999887 3568899999999999
Q ss_pred HHHHHHHHHHHhhhhccCccccccccc----c---CcCHHHHHhhhCCHHHHHHHHhhhh-cccccCCcccCCccccccc
Q 005331 158 AQEMKWIIMIILKDLKLGISEKSIFHE----F---HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (702)
Q Consensus 158 ~~E~k~l~RiIlk~lriG~~e~~il~~----~---hpda~~~~~~~~dL~~V~~~L~~~~-~~~~~~~i~~~~~~~PmLA 229 (702)
+.|++||+|+|+++||||+++++|+.+ | |++++++|++++||+.||+.|+++. .++....+++|.|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCHHHHHHHHccCCCHHHHHHHHHhcccccccccCCCCCCCCCCeeC
Confidence 999999999999999999999999985 3 4678999999999999999988743 3456778999999999999
Q ss_pred cccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHhhccccceeeeceEEEeeCC
Q 005331 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGE~v~~d~~ 309 (702)
++..+++++++++++ +|++|+||||+|||+|++++++++|||+|+++|..||++.+.+...+...++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCcceEeeeEEEEEc-C
Confidence 999888888887754 79999999999999999999999999999999999999988776555567999999999999 5
Q ss_pred CCccccccchHHHHHHhhc--CCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccc
Q 005331 310 LNRFAEFGSNQEIAKAARD--GLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHV 387 (702)
Q Consensus 310 ~~~~~~F~~lq~~~~~~r~--~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v 387 (702)
+++++||+.+|...++... ......+++|++|||||+||+++++.||.+|+++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~---------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA---------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC----------
T ss_pred CCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEe----------
Confidence 6778899888876432110 001136899999999999999999999999999999999764 344321
Q ss_pred cCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEEEEEecCCCCC
Q 005331 388 RPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRG 467 (702)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVIG~~~G~G~r~ 467 (702)
....+.+.++++++|++++++|+||||+|+++|+|.||+|+++|+|+|++| +++|++|||+++|+|+++
T Consensus 375 -------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr~ 443 (561)
T 2cfm_A 375 -------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRRA 443 (561)
T ss_dssp -------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGGT
T ss_pred -------eeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCCC
Confidence 134567899999999999999999999999999999999999999999998 689999999999999999
Q ss_pred CccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcEEEeCC
Q 005331 468 GEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP 547 (702)
Q Consensus 468 g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~~P 547 (702)
|.+|+|+||++++++ +.|+++|+||||||++++++|.+.+++++.. ...|++|++ |
T Consensus 444 g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~-P 499 (561)
T 2cfm_A 444 HLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ-P 499 (561)
T ss_dssp TSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-S
T ss_pred CccceEEEEEEeCCC-----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-C
Confidence 999999999998653 3799999999999999999999999887643 134799999 7
Q ss_pred CceEEEEEeeeceeecccccCCCceeeccEEEEEecCCCccCCCCHHHHHHHHHc
Q 005331 548 EKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 602 (702)
Q Consensus 548 ~~s~v~ev~a~~~~~~s~~~~~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~~~ 602 (702)
. .|+||+++.. ..|+.|+.|++||||||.|+|+||+|+||+|++++.+|++.
T Consensus 500 ~--~V~EV~~~~~-t~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~ 551 (561)
T 2cfm_A 500 K--VVIEVTYQEI-QKSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYEL 551 (561)
T ss_dssp C--CEEEEECSEE-ECCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHH
T ss_pred c--eEEEEEEEEE-EcCCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHH
Confidence 4 6999997543 36788999999999999999999999999999999999964
No 5
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.9e-99 Score=878.55 Aligned_cols=553 Identities=25% Similarity=0.434 Sum_probs=464.6
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhc--CCCchHhhhHhhcCCCC--CCCccccCCCHHHHHHHHHHHhCC
Q 005331 5 EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALGM 80 (702)
Q Consensus 5 ~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~--~~~~~~~~~lrLllp~~--d~~r~~ygike~~L~k~~~~~~~l 80 (702)
.+|+|+.||++|++|++|+++.+|+++|.+||.++ .+++|+.++++|+++.+ ++++.+|||+++.|++++++++|+
T Consensus 54 ~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g~ 133 (688)
T 1x9n_A 54 QKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGR 133 (688)
T ss_dssp SCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHCc
Confidence 57999999999999999999999999999999985 36789999999986654 445679999999999999999999
Q ss_pred CcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccCC-CCCCCCHHHHHHHHHHHHhhhch---HhHHHHHHHHHHhC
Q 005331 81 SKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM-ISGGLTIKELNDLLDRLASSENR---AEKISVLSTLIKKT 156 (702)
Q Consensus 81 ~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~~-~~~~lTi~eVn~~Ld~La~~~~~---~~k~~~l~~ll~~~ 156 (702)
+.+.... .| ...||||++|+++++++... .+++|||.+||+.|++||..++. ..|..+|..|+.+|
T Consensus 134 ~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~ 203 (688)
T 1x9n_A 134 QLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVAC 203 (688)
T ss_dssp CHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred CHHHHHH----HH------HhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhC
Confidence 9876543 33 34799999999888765432 45789999999999999998773 45789999999999
Q ss_pred CHHHHHHHHHHHhhhhccCcccccccccc------CcC------------------------------HHHHHhhhCCHH
Q 005331 157 NAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDLK 200 (702)
Q Consensus 157 t~~E~k~l~RiIlk~lriG~~e~~il~~~------hpd------------------------------a~~~~~~~~dL~ 200 (702)
++.|++||+|+|+++||||+++++|+.++ ||. ..++|+.++|++
T Consensus 204 ~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~ 283 (688)
T 1x9n_A 204 RHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLD 283 (688)
T ss_dssp CSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred CHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999999999999753 541 135799999999
Q ss_pred HHHHHHhh-hhccc-ccCCcccCCccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEe-CCEEEEEeCCCCCC
Q 005331 201 LVCEKLKD-RNQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDH 277 (702)
Q Consensus 201 ~V~~~L~~-~~~~~-~~~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~-g~~v~~~SR~g~d~ 277 (702)
.||..|.+ +...+ ....+++|.|++||||++..+++++++++.+..|++|+||||+|||+|++ ++++++|||+|+++
T Consensus 284 ~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d~ 363 (688)
T 1x9n_A 284 RIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDN 363 (688)
T ss_dssp HHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBC
T ss_pred HHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCcc
Confidence 99998764 33333 35679999999999999999888888899888999999999999999995 56899999999999
Q ss_pred CcchhhHHHHHHhhc--cccceeeeceEEEeeCCCCccccccchHHHHHHhhcCCC---CCCceEEEEEEEeeeCCcccc
Q 005331 278 SEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS---SDRQLCYFAFDVLYVGDTSVI 352 (702)
Q Consensus 278 t~~~p~l~~~~~~~~--~~~~~ILDGE~v~~d~~~~~~~~F~~lq~~~~~~r~~~~---~~~~~~~~vFDiL~lng~~l~ 352 (702)
|..||++.+.+...+ ..+++|||||||+||+.+++++||+.+|.. .+.... ...+++|++|||||+||++++
T Consensus 364 t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r---~r~~~~~~~~~~~v~~~vFDlL~l~G~~l~ 440 (688)
T 1x9n_A 364 TGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTR---KRKEVDASEIQVQVCLYAFDLIYLNGESLV 440 (688)
T ss_dssp TTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTS---CSSCCCGGGCCSEEEEEEEEEEEETTEECT
T ss_pred cccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHHH---hhcccchhhcccceEEEEEechhhcCCccc
Confidence 999999987654332 246899999999999877888999766542 222211 235899999999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecC--CCCcc
Q 005331 353 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWE 430 (702)
Q Consensus 353 ~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~--ds~Y~ 430 (702)
+.||.+|+++|++++.+.++++.+.. ...+.+.++++++|++++++|+||||+|++ +|+|+
T Consensus 441 ~~Pl~eRr~~L~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~ 503 (688)
T 1x9n_A 441 REPLSRRRQLLRENFVETEGEFVFAT-----------------SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYE 503 (688)
T ss_dssp TSCHHHHHHHHHHHBCCBTTTEEECC-----------------EECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSC
T ss_pred cCCHHHHHHHHHHhhccCCCcEEEEe-----------------eEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCC
Confidence 99999999999999987666554321 234578899999999999999999999999 99999
Q ss_pred cCCCCCCeEEEccccccC-CCcceEEEEEEEecCCCCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHH
Q 005331 431 PGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV 509 (702)
Q Consensus 431 ~G~Rs~~WlKvK~~y~~~-g~~~DlvVIG~~~G~G~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~ 509 (702)
||+|+.+|+|+|++|+++ ++++|+||||||+|+|+++|.+|+|+||++++++ +.|+++|+||||||++++++|.
T Consensus 504 ~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~ 578 (688)
T 1x9n_A 504 IAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEHH 578 (688)
T ss_dssp TTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHHH
T ss_pred CCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHH
Confidence 999999999999999885 7899999999999999999999999999998753 3899999999999999999999
Q ss_pred HhhccccccccCCCCCCCCcccccCCCCCCCcEEEeCCCceEEEEEeeeceeecccccCC---------CceeeccEEEE
Q 005331 510 TKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRIDR 580 (702)
Q Consensus 510 ~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~~P~~s~v~ev~a~~~~~~s~~~~~---------g~tLRfPr~~r 580 (702)
+.+++++.. .|+.++... ....|++||+ |. .|+||++... ..|+.|++ |++||||||.|
T Consensus 579 ~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~-t~S~~~~~~~g~~~~~~G~sLRfPrf~r 646 (688)
T 1x9n_A 579 QSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL-SLSPIYPAARGLVDSDKGISLRFPRFIR 646 (688)
T ss_dssp HHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-EEESSCCTTTTTSCSSCEEEEESCEEEE
T ss_pred HHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEee-eccccccccccccccCCCceEECcEEEE
Confidence 999998764 133344332 2568999999 74 6999986432 25667765 89999999999
Q ss_pred EecCCCccCCCCHHHHHHHHHccC
Q 005331 581 VRYDKPWHDCLDVQSFVELVHSSN 604 (702)
Q Consensus 581 iR~DK~~~d~~t~~el~~l~~~~~ 604 (702)
+|+||+|+||+|++++.+|++.+.
T Consensus 647 iR~DK~~~ea~t~~~l~~l~~~q~ 670 (688)
T 1x9n_A 647 VREDKQPEQATTSAQVACLYRKQS 670 (688)
T ss_dssp ECTTCCGGGSCBHHHHHHHHHHHC
T ss_pred EeCCCChHHCCCHHHHHHHHHHhH
Confidence 999999999999999999997543
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.6e-64 Score=532.29 Aligned_cols=307 Identities=23% Similarity=0.335 Sum_probs=245.5
Q ss_pred cccCCccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHhhccccce
Q 005331 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (702)
Q Consensus 218 i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ 297 (702)
.++|.|++||||+..+.. . +.+.+|++|+||||+|||+|++++++++|||||+++|..||++.+.+ ..+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~~-~----~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTVA-G----LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCCT-T----CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCccCeECCCcCCC-c----cCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHH-HhCCCccE
Confidence 468899999999998532 1 34568999999999999999999999999999999999999988754 34545689
Q ss_pred eeeceEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCccccc
Q 005331 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (702)
Q Consensus 298 ILDGE~v~~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~ 377 (702)
|||||||+||+. ++ .+|+.+|.. .+ ..+++|++||||++||++++++||.+|+++|++++.+. ++.+.
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~r---~~-----~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~~ 144 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQNR---GR-----DTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTVP 144 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHTC---CT-----TSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCCC
T ss_pred EEeeEEEEECCC-CC-cCHHHHHhh---cc-----CCcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEEC
Confidence 999999999874 33 488666542 11 12589999999999999999999999999999998643 32211
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEE
Q 005331 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (702)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVI 457 (702)
.....+++++|++++++|+||||+|+++|+|.+|+|+.+|+|+|++| ++|++|+
T Consensus 145 ---------------------~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv~ 198 (310)
T 1vs0_A 145 ---------------------ELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVIG 198 (310)
T ss_dssp ---------------------CCCCSSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEEE
T ss_pred ---------------------ccCchHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEEE
Confidence 01112589999999999999999999999999999999999999997 8999999
Q ss_pred EEEecCCCCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCC
Q 005331 458 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 537 (702)
Q Consensus 458 G~~~G~G~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~ 537 (702)
|+++|+|+++|.+|+|+||++|++ .++++|+||||||++++++|.+.+++++.. +|+|....+...
T Consensus 199 G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~-------~~p~~~~~~~~~ 264 (310)
T 1vs0_A 199 GWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD-------ESPFDVPLPARD 264 (310)
T ss_dssp EEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS-------SCSBSSCCCHHH
T ss_pred EEEcCCCCccCccceEEEEEEcCC-------CCEEEEEECCCCCHHHHHHHHHHHHhhccC-------CCCccccCCccc
Confidence 999999999999999999999753 389999999999999999999999998754 122321111134
Q ss_pred CCCcEEEeCCCceEEEEEeeeceeecccccCCCceeeccEEEEEecCCCccCCCC
Q 005331 538 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 592 (702)
Q Consensus 538 ~~pdvwi~~P~~s~v~ev~a~~~~~~s~~~~~g~tLRfPr~~riR~DK~~~d~~t 592 (702)
.+|++|++ |+ +|+||+++ .++.+++||||||+++|+||+|+||+.
T Consensus 265 ~~~~~wv~-P~--~V~ev~~~-------~~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 265 AKGITYVK-PA--LVAEVRYS-------EWTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HTTEEEBC-TT--CEEEEEES-------CBCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCCEEEc-CC--EEEEEEEE-------EEcCCCeEEceEEEEEeCCCCHHHhCC
Confidence 57899998 76 68899763 355688999999999999999999974
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=6.9e-54 Score=463.92 Aligned_cols=304 Identities=19% Similarity=0.233 Sum_probs=237.8
Q ss_pred CCcccCCccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEe-CCEEEEEeCCCCCCCc------chhhHHHHH
Q 005331 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (702)
Q Consensus 216 ~~i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~-g~~v~~~SR~g~d~t~------~~p~l~~~~ 288 (702)
..+++|.|++|||+. +.+++... +.|++|+||||+|||+|++ ++++++|||+|++++. ++|++.+.+
T Consensus 3 ~~~~~~~pv~pmL~~----~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVESA----IKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHHH----HHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred eeccCCCcCchhhhc----HHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHH
Confidence 468899999999943 34445443 4799999999999999998 6899999999999886 788888776
Q ss_pred Hhh--ccccceeeeceEEEeeCCCCccccccchHHHHHHh------------------hcC-----CCCCCceEEEEEEE
Q 005331 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG-----LSSDRQLCYFAFDV 343 (702)
Q Consensus 289 ~~~--~~~~~~ILDGE~v~~d~~~~~~~~F~~lq~~~~~~------------------r~~-----~~~~~~~~~~vFDi 343 (702)
... ..+.++|||||||+|+ .||+.+|...++. +.. .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred hhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEee
Confidence 542 3456999999999974 4999998876521 100 01246899999999
Q ss_pred eeeC----Cccc---cCCCHHHHHHHHHhhccCCCC-cccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHC
Q 005331 344 LYVG----DTSV---IHQSLKERHELLQKVVKPSKG-RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 415 (702)
Q Consensus 344 L~ln----g~~l---~~~pl~eRr~~L~~~~~~~~~-~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~ 415 (702)
|++| |+++ +++||.+|+++|++++...++ ++.+. ....+++.++++++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEe-----------------ccEecCCHHHHHHHHHHHHHc
Confidence 9999 9998 899999999999999875432 22221 134567889999999999999
Q ss_pred CCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEEEEEecCCCC--CCccceEEEEEecCCCCCCCCcceEEE
Q 005331 416 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 493 (702)
Q Consensus 416 g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVIG~~~G~G~r--~g~~gs~llg~~d~~~~~~~~~~~~~v 493 (702)
|+||||+|+++|+|++|+|++ |+|+|++| ++|++|||+++|+|++ +|.+|+|+|+ ++ + +.|+
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~-~~-~------g~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVL-LE-S------GRLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEE-CT-T------SCEE--
T ss_pred CCceEEEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEE-eC-C------CCEE--
Confidence 999999999999999998875 99999998 9999999999999986 7899999985 22 2 2554
Q ss_pred EEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcEEEeCCCceEEEEEeeeceeecccccCCCcee
Q 005331 494 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 573 (702)
Q Consensus 494 ~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~~P~~s~v~ev~a~~~~~~s~~~~~g~tL 573 (702)
+|||||++++++|.+.+++++... ..+| +. . ....+|++|++ |..+.|+||++.. ++.+++|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~~----~~~~-~~-~--~~~~~~~~wv~-P~~g~v~eV~~~~-------~t~~G~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLSQ----WGFF-SP-Y--GIGDNDACTIN-PYDGWACQISYME-------ETPDGSL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTTT----SCCC------------CCCCCC-TTTTCEEEEEESE-------ECTTSCE
T ss_pred --EccCCCHHHHHHHHHHHhhhcccc----CCCc-cc-c--cCCCCCcEEEc-CCCcEEEEEEeee-------ecCCCce
Confidence 379999999999999999887531 1233 21 1 12467899998 8888999998643 3434599
Q ss_pred eccEEEEEe
Q 005331 574 RFPRIDRVR 582 (702)
Q Consensus 574 RfPr~~riR 582 (702)
|||||.++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCeEeEeC
Confidence 999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=1.8e-48 Score=411.78 Aligned_cols=265 Identities=17% Similarity=0.231 Sum_probs=200.2
Q ss_pred ccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHHHHhhccccceeeece
Q 005331 223 AVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302 (702)
Q Consensus 223 ~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGE 302 (702)
+|+||||++...+.+ ...+|++|+||||+|||+ + + ++|||+|+++|. |++.+.+...+ ++|||||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~--~-g--~l~SR~g~~~t~--p~l~~~~~~~~---~~iLDGE 66 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK--Q-T--QMLSRTFKPIRN--SVMNRLLTELL---PEGSDGE 66 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE--S-S--SEECTTSCBCSC--HHHHHHHHHHS---CTTEEEE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe--c-C--EEECCCCcccCc--HHHHHHHHhcC---CeeEEEE
Confidence 689999999876521 146899999999999998 4 3 999999999996 88877665432 8999999
Q ss_pred EEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCC-----ccccc
Q 005331 303 MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLETL 377 (702)
Q Consensus 303 ~v~~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~-----~~~~~ 377 (702)
+|++. .+|+.+|.+.+... .....+++|+||||||+| ++.||.+|+++|++++.+.+. ++.++
T Consensus 67 lv~~~------~~F~~l~~~~~~~~--~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~ 134 (297)
T 1fvi_A 67 ISIEG------ATFQDTTSAVMTGH--KMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKII 134 (297)
T ss_dssp EECTT------SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEEE
T ss_pred EEECC------CCHHHHHHHhccCC--CCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceEEEc
Confidence 99932 46877766543211 113468999999999998 789999999999999875432 23221
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCC----CeEEEccccccCCCcce
Q 005331 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDLD 453 (702)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~----~WlKvK~~y~~~g~~~D 453 (702)
. .....+.+.++++++|++++++|+||||+|+++|+|++| |+. +|+|+|+++ ++|
T Consensus 135 ~---------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~d 193 (297)
T 1fvi_A 135 P---------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DAE 193 (297)
T ss_dssp E---------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EEE
T ss_pred C---------------cceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CEE
Confidence 1 002345688999999999999999999999999999999 888 999999986 899
Q ss_pred EEEEEEEec---------------------CCCC-CCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHh
Q 005331 454 VLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 511 (702)
Q Consensus 454 lvVIG~~~G---------------------~G~r-~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~ 511 (702)
++|||+++| +|++ .|.+|+|+|+.. + ++|+||||||++++++|.+.
T Consensus 194 ~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~~ 261 (297)
T 1fvi_A 194 ATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQN 261 (297)
T ss_dssp EEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHHT
T ss_pred EEEEEEEeCccccccccccccccccccccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHhh
Confidence 999999999 9998 889999999852 2 26799999999999998664
Q ss_pred hccccccccCCCCCCCCcccccCCCCCCCcEEEeCCCceEEEEEeeeceeecccccCCCceeeccEEEEEecCCCc
Q 005331 512 LKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587 (702)
Q Consensus 512 l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~~P~~s~v~ev~a~~~~~~s~~~~~g~tLRfPr~~riR~DK~~ 587 (702)
+. | + ...|+||++.. ++..++||||||.++|+||+|
T Consensus 262 ~~-------------p-~-------------------~g~v~ev~~~~-------~t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 262 KE-------------S-Y-------------------IGKMVKFKYFE-------MGSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp HH-------------H-H-------------------TTCEEEEEEEC-------C-----CEEEEEEEEC-----
T ss_pred cC-------------c-c-------------------cCcEEEEEEEE-------eCCCCCccCCeEEEEEcCCCC
Confidence 32 1 1 01266776532 333458999999999999986
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=1.1e-45 Score=377.82 Aligned_cols=215 Identities=41% Similarity=0.647 Sum_probs=192.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcC------------CCchHhhhHhhcCCCCCCCccccCCCHH
Q 005331 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------DSVDYFSALRLILPSLDRERGSYGLKES 68 (702)
Q Consensus 1 ~~~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~------------~~~~~~~~lrLllp~~d~~r~~ygike~ 68 (702)
|+++++|||+.||++|++|++++++.+|+.+|.+||++|+ .++++||++||++|++|++|++|||||+
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred cccccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHH
Confidence 6889999999999999999999999999999999999983 2679999999999999998889999999
Q ss_pred HHHHHHHHHhCCCcChHHHHHHhhhhcCCC-CCCCCCHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhhc---hHh
Q 005331 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (702)
Q Consensus 69 ~L~k~~~~~~~l~~~s~~~~~L~~wk~~~~-~~~~gD~~~~~~~v~~~r~~~~~~~lTi~eVn~~Ld~La~~~~---~~~ 144 (702)
+|+|+|++++|+++++.++.+|.|||+++. ....||||.+|++++++|+... ++|||.+||+.|++||..++ ++.
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~~-~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQK-GSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCCS-CCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCCCC-CCcCHHHHHHHHHHHHHhhCcccHHH
Confidence 999999999999999999999999998854 4678999999999998887643 78999999999999999876 345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhccCccccccccccCcCHHHHHhhhCCHHHHHHHHhhhhcccccC
Q 005331 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216 (702)
Q Consensus 145 k~~~l~~ll~~~t~~E~k~l~RiIlk~lriG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~~~~~~ 216 (702)
|..+|..||.+||+.|+|||+|+|+++||||+++++|+.+|||+++++|++|+||+.||+.|++|..++...
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~ 238 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDI 238 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChhHHHHHHhhCCHHHHHHHHhCchhhHhhc
Confidence 668999999999999999999999999999999999999999999999999999999999999988877654
No 10
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=1.4e-35 Score=325.09 Aligned_cols=313 Identities=16% Similarity=0.171 Sum_probs=213.0
Q ss_pred hhhCCHHHHHHHHhhhhcccccCCcccCCccccccccccCChHHHH-HHcCCCceEEEEecceEEEEEEE-----eCCEE
Q 005331 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW-RKLHGKEVVIECKFDGDRIQIHK-----NGSEI 267 (702)
Q Consensus 194 ~~~~dL~~V~~~L~~~~~~~~~~~i~~~~~~~PmLA~~~~~~~~~~-~~~~~~~~~~E~K~DG~R~qvh~-----~g~~v 267 (702)
.+.++|+.+|..|.+.. ...|...+|+... ...+ ..+...+|++|+||||+|+|+|+ +|+.+
T Consensus 20 ~~~~~l~~~v~~l~~~~-------~~~FPg~~Pvsl~-----~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v 87 (395)
T 1p16_A 20 EETKELRLMVAELLGRR-------NTGFPGSQPVSFE-----RRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGV 87 (395)
T ss_dssp HHHHHHHHHHHHHHTCS-------CCSCCCEEEEECC-----HHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHCCC-------CCCCCCCceeccc-----HHHHHHhhCcCCEEEEECccceEEEEEEeecccCCCEE
Confidence 45567888888876421 1222223343211 1222 33445679999999999999999 56789
Q ss_pred EEEeCCCCCCC---cchhhHHHHHHh-hccccceeeeceEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEE
Q 005331 268 HYFSRSFLDHS---EYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDV 343 (702)
Q Consensus 268 ~~~SR~g~d~t---~~~p~l~~~~~~-~~~~~~~ILDGE~v~~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDi 343 (702)
.++||+|++++ .+||++.+.... .....++|||||||+++.. ....+++|++|||
T Consensus 88 ~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~---------------------~~~~~~~f~~FDl 146 (395)
T 1p16_A 88 FLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRN---------------------VSEPVLRYVIFDA 146 (395)
T ss_dssp EEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCS---------------------SSCCEEEEEEEEE
T ss_pred EEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccC---------------------CCcceeEEEEEEE
Confidence 99999999964 478987653210 1235789999999997642 0125789999999
Q ss_pred eeeCCccccCCCHHHHHHHHHhhc-cCCCCcccc---cccCCCCCccccCCCCCccccccCCHHHHHHHHHH--HHHCCC
Q 005331 344 LYVGDTSVIHQSLKERHELLQKVV-KPSKGRLET---LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRD 417 (702)
Q Consensus 344 L~lng~~l~~~pl~eRr~~L~~~~-~~~~~~~~~---~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~--ai~~g~ 417 (702)
|++||++|+++||.+|+++|++++ .+....+.. +......+++++.. .......++++|+. ++.+|.
T Consensus 147 L~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~-------~~~~~~~~~~~~~~~~~~~~g~ 219 (395)
T 1p16_A 147 LAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFK-------TMLTSYHADDVLSKMDKLFHAS 219 (395)
T ss_dssp EEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEEC-------CCEEGGGTHHHHTTGGGCSSCE
T ss_pred EEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEe-------cchhHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999954 321100000 00000011222110 11233455667765 345899
Q ss_pred ceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEEEEEe--------cCCCCCCcc---ce----EEEEEecCCC
Q 005331 418 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALAERPA 482 (702)
Q Consensus 418 EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVIG~~~--------G~G~r~g~~---gs----~llg~~d~~~ 482 (702)
||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|+++|. |+|++ +.+ ++ |.+.+++.+.
T Consensus 220 EGlI~K~~ds~Y~~G-r~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~~ 294 (395)
T 1p16_A 220 DGLIYTCAETPYVFG-TDQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVWQGSN 294 (395)
T ss_dssp EEEEEEESSSCCCSE-EEEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEECSTT
T ss_pred CeEEEEeCCCCcCCC-CccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEEeCCc
Confidence 999999999999998 4569999999764 599999988875 67766 444 33 7778886542
Q ss_pred CCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcEEEeCCCceEEEEEeeeceee
Q 005331 483 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI 562 (702)
Q Consensus 483 ~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi~~P~~s~v~ev~a~~~~~ 562 (702)
.++.|+++ |||++++++|.+.+.+ ....|+|+..+.
T Consensus 295 ------~~~~f~~~--~ltd~e~~~l~~~~~~---------------------------------~~~~IvEc~~~~--- 330 (395)
T 1p16_A 295 ------VHTDFAKL--DLSDDDWERLKALEQP---------------------------------LQGRIAECRQST--- 330 (395)
T ss_dssp ------CEEEEEEE--CCCHHHHHHHHHSSSC---------------------------------CTTCEEEEEECS---
T ss_pred ------ccceeeEE--EeCHHHHHHhHhhccc---------------------------------CCCEEEEEEeec---
Confidence 46678887 9999999988653321 112467886532
Q ss_pred cccccCCCceeeccEEEEEecCCC-ccCCCCHHHHHHHHHcc
Q 005331 563 RSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHSS 603 (702)
Q Consensus 563 ~s~~~~~g~tLRfPr~~riR~DK~-~~d~~t~~el~~l~~~~ 603 (702)
+ ..| ||||.|+|+||+ +++..|++++.+++...
T Consensus 331 -~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~~ 364 (395)
T 1p16_A 331 -T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKDG 364 (395)
T ss_dssp -S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHHS
T ss_pred -C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHcc
Confidence 1 234 999999999999 88888888888887643
No 11
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.97 E-value=9.8e-31 Score=279.66 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=127.7
Q ss_pred cCCCceEEEEecceEEEEEEEe---C-CEEEEEeCCCCCCCcchhhHHHHHHhhccccceeeeceEEEeeCCCCcccccc
Q 005331 242 LHGKEVVIECKFDGDRIQIHKN---G-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (702)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qvh~~---g-~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGE~v~~d~~~~~~~~F~ 317 (702)
+...+|++|+||||+|+|+|++ | +.+.++||+|++++..+|++.. ....++|||||||++...
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-----~~~~~~vLDGElv~~~~~-------- 138 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCVDIVE-------- 138 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-----TGGGCEEEEEEEEEETTT--------
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-----ccCCCeeEEEEEEEEcCC--------
Confidence 3445799999999999999999 4 7899999999999988887632 235799999999995310
Q ss_pred chHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCcccc
Q 005331 318 SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSL 397 (702)
Q Consensus 318 ~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~ 397 (702)
..++|++||+|++||++|++.||.+|+++|++++....... ..+++++.. . ..
T Consensus 139 ----------------~~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~-------~~~~~i~~~---~-~~ 191 (330)
T 1ckm_A 139 ----------------KKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVP-------EDPAILRYK---E-WI 191 (330)
T ss_dssp ----------------TEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCT-------TSSSEEEEC---C-CE
T ss_pred ----------------CeEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccC-------CCCeEEEEE---E-EE
Confidence 12789999999999999999999999999999986321000 001111110 0 11
Q ss_pred ccCCHHHHHHHH---HHHHHC--CCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEE
Q 005331 398 VAHNVDEVEKFF---KETIEN--RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (702)
Q Consensus 398 ~~~~~~~i~~~~---~~ai~~--g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVI 457 (702)
.. +++++| ..++.+ |.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|+
T Consensus 192 ---~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY~~G-r~~~~lKwK~~~~---~tvDfvi~ 248 (330)
T 1ckm_A 192 ---PL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYG-RNFNLFKLKPGTH---HTIDFIIM 248 (330)
T ss_dssp ---ET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCCCCE-EEEEEEEECSTTC---CCEEEEEC
T ss_pred ---eh-hHHHHHHHHHHHHhccCCCceEEEeeCCCcccCC-CccCeEEEEeCCC---ceEEEEEE
Confidence 12 445555 467778 99999999999999998 6689999999654 59999777
No 12
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=231.78 Aligned_cols=127 Identities=35% Similarity=0.614 Sum_probs=98.5
Q ss_pred eEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcchhhHHHH------HHhhc--cccceeeeceEEEeeCCCCccccccc
Q 005331 247 VVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKI------IEQNV--LVDRCILDGEMLVWDTSLNRFAEFGS 318 (702)
Q Consensus 247 ~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~p~l~~~------~~~~~--~~~~~ILDGE~v~~d~~~~~~~~F~~ 318 (702)
|++|+||||+|||+|++|+++++|||||+|+|..||++.+. +...+ ...+||||||||+||+.++.|.+++.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~ 80 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT 80 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC--
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHh
Confidence 68999999999999999999999999999999999986531 11222 24789999999999987766665543
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccc
Q 005331 319 NQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 376 (702)
Q Consensus 319 lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~ 376 (702)
...+.+. ......++||++|||||+||++|++.||.+||++|++++.+.++++++
T Consensus 81 ~~~~~~~---~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 81 KFDIKRM---VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp --------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred hhhhhhh---hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 2111110 112246899999999999999999999999999999999988877654
No 13
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.5e-24 Score=234.66 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=134.0
Q ss_pred HHcCCCceEEEEecceEEEEEEEe-----C-CEEEEEeCCCCCCC---cchhhHHHH----HHhhccccceeeeceEEEe
Q 005331 240 RKLHGKEVVIECKFDGDRIQIHKN-----G-SEIHYFSRSFLDHS---EYGHAMSKI----IEQNVLVDRCILDGEMLVW 306 (702)
Q Consensus 240 ~~~~~~~~~~E~K~DG~R~qvh~~-----g-~~v~~~SR~g~d~t---~~~p~l~~~----~~~~~~~~~~ILDGE~v~~ 306 (702)
..+...+|++++|+||+|+|+++. | +.+.++||++.+++ ..||++.+. +... ...++|||||||++
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~-~~~~TlLDGElV~d 138 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET-LQDGTLLDGELVIQ 138 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC-CCCSEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc-cCCCeEEEEEEEec
Confidence 456678899999999999999987 3 68999999999985 468876542 1111 35789999999996
Q ss_pred eCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccC-CCCcccccccCC--CC
Q 005331 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRLETLVPDH--GL 383 (702)
Q Consensus 307 d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~-~~~~~~~~~p~~--~~ 383 (702)
... + ....+++|++||||++||+++++.||.+|+++|++++.. ....+. ..|.. ..
T Consensus 139 ~~~------~--------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~-~~p~~~~~~ 197 (461)
T 3kyh_C 139 TNP------M--------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRA-AYPNRCTTF 197 (461)
T ss_dssp ECT------T--------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHH-HCSTTCSCC
T ss_pred cCC------C--------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhh-ccccccccC
Confidence 531 1 013578999999999999999999999999999988632 111010 00000 00
Q ss_pred CccccCCCCCccccccCCHHHHHHHHHHH--HHCCCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEEE
Q 005331 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKET--IENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (702)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~~i~~~~~~a--i~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvVI 457 (702)
++.|+.. ......+++++|+.+ +.+|.||||+|+.+++|.+|.|+.+|+|+||.++ .++|++++
T Consensus 198 pF~V~~K-------~~~~~~~~~~l~~~~~~l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~ 263 (461)
T 3kyh_C 198 PFKISMK-------HMDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLI 263 (461)
T ss_dssp CSEEEEC-------CCEEGGGHHHHHHHHTTCSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEE
T ss_pred CcEEEec-------cchhhhhHHHHHHhhhhccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEE
Confidence 1111110 011234567777743 7799999999999999999879999999999764 59998665
No 14
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.89 E-value=5.6e-24 Score=227.30 Aligned_cols=177 Identities=19% Similarity=0.355 Sum_probs=116.4
Q ss_pred CCCceEEEEecceEEEEEEEe-CCEEEEEeCCCCCCC---cchhhHHHHHHhhccccceeeeceEEEeeCCCCccccccc
Q 005331 243 HGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGS 318 (702)
Q Consensus 243 ~~~~~~~E~K~DG~R~qvh~~-g~~v~~~SR~g~d~t---~~~p~l~~~~~~~~~~~~~ILDGE~v~~d~~~~~~~~F~~ 318 (702)
...+|++|+||||+|+|+++. ++++.++||+|.+++ ..||++.+. .....++|||||||+++.. +
T Consensus 61 ~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~---~~~~~~tvLDGElV~~~~~-g------- 129 (343)
T 3rtx_A 61 EQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL---RMHLSNTLLDGEMIIDKVN-G------- 129 (343)
T ss_dssp HHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE---EEECCSEEEEEEEEEEESS-S-------
T ss_pred ccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh---hccCCCeEEEEEEEEecCC-C-------
Confidence 345799999999999999998 789999999999985 378886542 2346789999999997642 1
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhh-ccCCCCccc-ccccCCCCCccccCCCCCccc
Q 005331 319 NQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKV-VKPSKGRLE-TLVPDHGLNSHVRPQGEPCWS 396 (702)
Q Consensus 319 lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~-~~~~~~~~~-~~~p~~~~~~~v~~~~~~~~~ 396 (702)
...+.|++||+|++||+++++.||.+|+++|++. +.+....+. -.......++.|+... .
T Consensus 130 --------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~----~ 191 (343)
T 3rtx_A 130 --------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQ----F 191 (343)
T ss_dssp --------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECC----C
T ss_pred --------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEE----e
Confidence 1246899999999999999999999999999974 432110000 0000001122232210 1
Q ss_pred cccCCHHHHHHHH----HHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccCCCcceEEE
Q 005331 397 LVAHNVDEVEKFF----KETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 456 (702)
Q Consensus 397 ~~~~~~~~i~~~~----~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~g~~~DlvV 456 (702)
+ ....+.++| ..++.++.||||+++.+ +|.+| |+.+|+|+||.+. .++|+.+
T Consensus 192 ~---~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 192 F---DINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp E---EGGGHHHHSCC----------CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred E---ehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 1 223334444 67889999999999999 99997 7889999999764 4899865
No 15
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.51 E-value=2.2e-13 Score=147.87 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=110.9
Q ss_pred CCceEEEEecceEEEEEEEeCCEEEEEeCCCCC--CCc-chhh-HHHHHHhhccccceeeeceEEEeeCCCCccccccch
Q 005331 244 GKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD--HSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSN 319 (702)
Q Consensus 244 ~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d--~t~-~~p~-l~~~~~~~~~~~~~ILDGE~v~~d~~~~~~~~F~~l 319 (702)
...|++|+|+||.|+++|+.+|+++++||++.. +|. .+|+ +...+... ..+++||||+++++. +|...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~--~~~l~L~GEvv~~~~------~f~~~ 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKD--NPNLILVGEMAGPES------PYLVE 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH--CTTEEEEEEEESSSC------SSCSC
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC--CCcEEEEEEEEecCC------hHHHh
Confidence 468999999999999999999999999999998 543 4455 22222211 567999999988652 34211
Q ss_pred HHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCcccccc
Q 005331 320 QEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVA 399 (702)
Q Consensus 320 q~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~ 399 (702)
. ......++.|++|||++.++.. ..|+.+|+++|+++--+....+. ....
T Consensus 166 n--------~~np~r~l~F~vFDV~~~~~g~--~~s~~er~~~L~~lG~~~vp~~~--------------------~~~~ 215 (389)
T 2vug_A 166 G--------PPYVKEDIQFFLFDVQEIKTGR--SLPVEERLKIAEEYGINHVEVFG--------------------KYTK 215 (389)
T ss_dssp C--------CTTCCSSCEEEEEEEEETTTCC--BCCHHHHHHHHHHHTCCBCCEEE--------------------EEEG
T ss_pred c--------ccCcccCCEEEEEEeeccCCCC--cCCHHHHHHHHHHcCCCCCCeEE--------------------EEcC
Confidence 0 0012568999999998876332 27899999999998433221110 1122
Q ss_pred CCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEcccc
Q 005331 400 HNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 445 (702)
Q Consensus 400 ~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y 445 (702)
.+.+++.++++.+...+.||||+|..+ +. .|+|++..+
T Consensus 216 ~~~eel~~~i~~~~~~~~EGvViK~~d-------~~-~~lkyt~~~ 253 (389)
T 2vug_A 216 DDVDELYQLIERLSKEGREGIIMKSPD-------MK-KIVKYVTPY 253 (389)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECTT-------SC-CEEEEECHH
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEECC-------hh-hhcCceecC
Confidence 267899999999999999999999876 33 688887754
No 16
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.42 E-value=1.8e-12 Score=137.74 Aligned_cols=151 Identities=20% Similarity=0.211 Sum_probs=104.5
Q ss_pred HHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCC---CcchhhHHH-HHHhhccccceeeeceEEEeeCCCCcc
Q 005331 238 AWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH---SEYGHAMSK-IIEQNVLVDRCILDGEMLVWDTSLNRF 313 (702)
Q Consensus 238 ~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~---t~~~p~l~~-~~~~~~~~~~~ILDGE~v~~d~~~~~~ 313 (702)
.++....++|++|+|+||+++-+.+.+|++..+||+|... |...|++.+ .+.+.+ ++++|||||++-+ +
T Consensus 66 ~i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~--P~l~LdGEl~g~~---n-- 138 (370)
T 3qwu_A 66 GLREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDEN--PDLVICAEVAGPE---N-- 138 (370)
T ss_dssp HHHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHC--TTEEEEEEEECTT---C--
T ss_pred hhhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcC--CCeEEEEEEEcCC---C--
Confidence 3343334689999999999998877778899999999875 344454432 233322 6999999998832 1
Q ss_pred ccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCC
Q 005331 314 AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 393 (702)
Q Consensus 314 ~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~ 393 (702)
||.. ........++.|+||||...+ ....+|+.+|+++|+++-.+....+.
T Consensus 139 -py~~--------~s~~y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll~~~~lp~V~ii~------------------ 189 (370)
T 3qwu_A 139 -PYIE--------ESPPYVKEDVQLFVFDFMKKN--EQGFLSQEEKMELIEKYNLPHVEILG------------------ 189 (370)
T ss_dssp -SSCS--------CCCTTCCSSCEEEEEEEEETT--CCSCCCHHHHHHHHHHHTCCBCCEEE------------------
T ss_pred -Cccc--------cCCcccccCceEEEEeCcccc--CCCcCCHHHHHHHHHHCCCCCccEEE------------------
Confidence 3310 000012357899999999753 34467999999999987654321110
Q ss_pred ccccccC--CHHHHHHHHHHHHHCCCceEEEecCC
Q 005331 394 CWSLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 426 (702)
Q Consensus 394 ~~~~~~~--~~~~i~~~~~~ai~~g~EGlV~K~~d 426 (702)
+.... +.+++.+++++..+.|.||||+|+++
T Consensus 190 --~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 190 --RFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp --EECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred --EeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 22334 57788999999999999999999986
No 17
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=3.7e-06 Score=73.66 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=40.9
Q ss_pred cccccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEec-----------CCCeeEEEec
Q 005331 651 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-----------NNSVTHCVAN 701 (702)
Q Consensus 651 ~~~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~-----------~~~~~~~i~~ 701 (702)
.+.++||+|+.|||.. ..++++||.+|++|||++++++ ...+||||+.
T Consensus 7 ~~~~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~d 65 (100)
T 2ep8_A 7 GKHKKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVD 65 (100)
T ss_dssp SCSCCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECS
T ss_pred CchHHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEec
Confidence 3468999999999975 4689999999999999999985 2479999974
No 18
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=98.04 E-value=2.2e-05 Score=83.52 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=70.2
Q ss_pred HcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc----chhhHHH-------HHHhhcc---ccceeeeceEEEe
Q 005331 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (702)
Q Consensus 241 ~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~----~~p~l~~-------~~~~~~~---~~~~ILDGE~v~~ 306 (702)
.+.+.+|++++|+||..+-+...++++.+.||++.-.+. .+..... .+.+.+. ..+++|=||++..
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred ccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 355678999999999999999999999999999864221 1111111 1111111 2689999999973
Q ss_pred eCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEe-eeCCccccCCCHHHHHHHHHhh
Q 005331 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (702)
Q Consensus 307 d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL-~lng~~l~~~pl~eRr~~L~~~ 366 (702)
.-. .+..-. +..|++|||. ..++..-.-+|..+|+++++.+
T Consensus 105 ~Iq------------------~~i~Y~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 GIQ------------------KNVDYG-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp TTB------------------SSCCCC-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred ccc------------------CCcccC-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 210 011111 4489999997 4343223457999999999985
No 19
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=98.04 E-value=8.8e-06 Score=85.85 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=109.2
Q ss_pred ceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhc-cccceeeeceEEEeeCC----------
Q 005331 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS---------- 309 (702)
Q Consensus 246 ~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-~~~~~ILDGE~v~~d~~---------- 309 (702)
.|++|+|+||..+.+.+.+|. ++..|| .|+|+|.-...+.. +...+ .+..+.+-||++.-...
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~p~~leVRGEv~m~~~~F~~lN~~~~~ 192 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRS-VPMRLTEPISVEVRGECYMPKQSFVALNEEREE 192 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcC-CccccCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 599999999999999998887 799999 78899864433221 10111 13458899999873210
Q ss_pred CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCC
Q 005331 310 LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN 384 (702)
Q Consensus 310 ~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~ 384 (702)
.|. .+|..-+..+ ...| ..+ ...++.|++|++...+|.. -.+..++.+.|.++-=++...
T Consensus 193 ~g~-~~faNPRNaAAGsLr-qld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~----------- 257 (332)
T 1ta8_A 193 NGQ-DIFANPRNAAAGSLR-QLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPE----------- 257 (332)
T ss_dssp TTC-CCCSSHHHHHHHHHT-CSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTT-----------
T ss_pred cCC-ccccChHHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc-----------
Confidence 000 2343222221 1112 112 2468999999995333322 268899999999875433211
Q ss_pred ccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCccc----CCCCCCe---EEEccc
Q 005331 385 SHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 444 (702)
Q Consensus 385 ~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~~----G~Rs~~W---lKvK~~ 444 (702)
...+.+.+++.++++...+. .-.|||+|--+..|.. ..|++.| +|+.++
T Consensus 258 -----------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 258 -----------RQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp -----------CEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred -----------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 22457889999999988765 6699999976655542 3467788 555554
No 20
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=98.01 E-value=4.1e-05 Score=78.24 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=69.9
Q ss_pred HcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCC--Cc--chhhHHH-------HHHhhcc---ccceeeeceEEEe
Q 005331 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH--SE--YGHAMSK-------IIEQNVL---VDRCILDGEMLVW 306 (702)
Q Consensus 241 ~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~--t~--~~p~l~~-------~~~~~~~---~~~~ILDGE~v~~ 306 (702)
.+.+.+|.+++|+||.-+-+...++++.++||++.-. +. .+..+.. .+.+.+. ..+++|=||++..
T Consensus 24 ~~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 24 GLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp TCSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred ccCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 3556789999999999999998988999999998642 21 1111111 1111111 3789999999973
Q ss_pred eCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEe-eeCCccccCCCHHHHHHHHHhh
Q 005331 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (702)
Q Consensus 307 d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL-~lng~~l~~~pl~eRr~~L~~~ 366 (702)
.-.. ...-. +..|++|||. ..++....-+|..+|+++++.+
T Consensus 104 ~Iq~------------------~v~Y~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 GIQK------------------NVDYC-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TTSS------------------SCCCC-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cccC------------------CcccC-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 2100 10111 4589999996 4343223457999999999885
No 21
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=97.93 E-value=1.1e-05 Score=70.09 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=40.8
Q ss_pred ccccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecC-CCeeEEEec
Q 005331 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAN 701 (702)
Q Consensus 652 ~~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~-~~~~~~i~~ 701 (702)
..+.+|+|+.||| ++....++++|+++|.+|||++++... ..+||+|+.
T Consensus 8 ~~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~ 57 (97)
T 2ebw_A 8 TSSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIAT 57 (97)
T ss_dssp CCCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECS
T ss_pred CCCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEec
Confidence 4678999999995 665556799999999999999887554 469999986
No 22
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=97.84 E-value=1.6e-05 Score=83.57 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=108.5
Q ss_pred CceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhc-cccceeeeceEEEeeCC---------
Q 005331 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS--------- 309 (702)
Q Consensus 245 ~~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-~~~~~ILDGE~v~~d~~--------- 309 (702)
-.|++|+|+||..+.+++.+|. ++..|| .|+|+|+-...+... ...+ .+..+.+-||++.-...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSL-PLRLKEPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCC-CcccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 3599999999999999998775 789999 888998644333221 0111 13458899999873210
Q ss_pred -CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCC
Q 005331 310 -LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 383 (702)
Q Consensus 310 -~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~ 383 (702)
.+. .+|..-+..+ ...| ..+ ...++.|++|++...+|.. -.+..++.+.|.++-=++...
T Consensus 186 ~~g~-~~faNpRNaAAGsLr-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~---------- 251 (318)
T 1b04_A 186 ARGE-ELFANPRNAAAGSLR-QLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPE---------- 251 (318)
T ss_dssp HC---CCCSCHHHHHHHHHH-SSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTT----------
T ss_pred HcCC-CccchhhHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 000 1333222211 1112 112 1368999999995333322 268899999999875433211
Q ss_pred CccccCCCCCccccccCCHHHHHHHHHHHHH------CCCceEEEecCCCCccc----CCCCCCe---EEEccc
Q 005331 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 444 (702)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~------~g~EGlV~K~~ds~Y~~----G~Rs~~W---lKvK~~ 444 (702)
...+.+.+++.+++++..+ -.-.|||+|--+-.|.. ..|++.| +|+.++
T Consensus 252 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpae 313 (318)
T 1b04_A 252 ------------RRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAE 313 (318)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCCC
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCcc
Confidence 2245788999999988765 46689999976655542 3467888 455554
No 23
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=97.74 E-value=3.3e-05 Score=65.97 Aligned_cols=48 Identities=35% Similarity=0.529 Sum_probs=39.2
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecC--CCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN--NSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~--~~~~~~i~~ 701 (702)
.+++|+|+.|||.... ..++++|+++|.+|||+++++.. ..+||+|+.
T Consensus 4 ~~~~f~g~~~~i~g~~-~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~ 53 (92)
T 4id3_A 4 SSKIFKNCVIYINGYT-KPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVAS 53 (92)
T ss_dssp --CTTTTCEEEECSCC-SSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECS
T ss_pred cccccCCEEEEEeCCC-CcCHHHHHHHHHHCCCEEEEEecCCCceEEEEec
Confidence 5789999999995322 23689999999999999999987 679999985
No 24
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.57 E-value=0.00019 Score=81.34 Aligned_cols=223 Identities=18% Similarity=0.246 Sum_probs=130.9
Q ss_pred CceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhc----cccceeeeceEEEeeCC------
Q 005331 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------ 309 (702)
Q Consensus 245 ~~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~----~~~~~ILDGE~v~~d~~------ 309 (702)
..|++|+|+||.-+.+.+.+|. ++..|| .|.|+|+....+.. +...+ .+..+.+=||++.-...
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~~~~F~~ln~ 186 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEEhhhccccch
Confidence 4699999999999998888776 799999 47788853222211 00011 13457788999872110
Q ss_pred ----CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccC
Q 005331 310 ----LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380 (702)
Q Consensus 310 ----~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~ 380 (702)
.+ -.+|..-+..+ ...| ..+ ...++.|++|++...+|..+. ....++.+.|.++-=+....
T Consensus 187 ~~~~~g-~~~faNpRNaaAGslr-qld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~~------- 256 (586)
T 4glx_A 187 DARRTG-GKVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSDR------- 256 (586)
T ss_dssp HHHHTT-CCCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCTT-------
T ss_pred hhhhcc-CccchhhHHHHhcccc-ccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCccc-------
Confidence 00 01233322221 1111 111 246899999999988775532 46788999998863222111
Q ss_pred CCCCccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCccc--C--CCCCCe---EEEcccccc
Q 005331 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP--G--DRSGKW---LKLKPEYIR 447 (702)
Q Consensus 381 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~~--G--~Rs~~W---lKvK~~y~~ 447 (702)
...+.+.+++.+++++.... .-.|||+|--+-.+.. | .+++.| +|+.++
T Consensus 257 ---------------~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e--- 318 (586)
T 4glx_A 257 ---------------VTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (586)
T ss_dssp ---------------CEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCC---
T ss_pred ---------------eeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccch---
Confidence 23456788888888776554 4489999964433321 2 367788 455443
Q ss_pred CCCcceEEEEEEEecCCCCCCccceEEEEEecCCC-CCCCCcceEEEEEecCCCCHHHHHHHH
Q 005331 448 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPA-PDTYPRRFISFCRVGTGLSDEELDAVV 509 (702)
Q Consensus 448 ~g~~~DlvVIG~~~G~G~r~g~~gs~llg~~d~~~-~~~~~~~~~~v~kVgtG~s~~~~~~l~ 509 (702)
..--.|.+-.|..|| .|.+.-.. ..++-. + + .+|.++ |..+.++.+++.
T Consensus 319 ---~~~T~v~~I~~qVGR-TG~iTPvA--~lePV~l~----G--~tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 319 ---EQMTFVRDVEFQVGR-TGAITPVA--RLEPVHVA----G--VLVSNA-TLHNADEIERLG 368 (586)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEEE--EEEEEEET----T--EEEEEE-ECCCHHHHHHHT
T ss_pred ---hheeEeEEEEEecCC-ceEEEEEE--EEeeEEeC----C--EEEEec-ccCCHHHHHhcC
Confidence 455577777777765 45554331 112100 0 1 245555 888888888763
No 25
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.51 E-value=0.00037 Score=73.02 Aligned_cols=167 Identities=20% Similarity=0.212 Sum_probs=99.0
Q ss_pred CCCceEEEEecceEEEEEEEeCCE-EEEEeCC----CCCCCcchhhHHHHHHhhc-cccceeeeceEEEeeCC-------
Q 005331 243 HGKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS------- 309 (702)
Q Consensus 243 ~~~~~~~E~K~DG~R~qvh~~g~~-v~~~SR~----g~d~t~~~p~l~~~~~~~~-~~~~~ILDGE~v~~d~~------- 309 (702)
....|++|+|+||.-+.+.+.+|. ++..||. |.|+|+-...+.. +...+ ....+.+=||++.-...
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~~~~~levRGEv~m~~~~F~~~n~~ 178 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLPEELDITVRGECYMPRASFDQVNQA 178 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCCCcccccccceEEeehhhHHHHHHH
Confidence 456799999999999998887776 7999998 7788863322211 10111 13457889999872110
Q ss_pred ---CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCC
Q 005331 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (702)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (702)
.+ -.+|..-+..+ ...+ ..+ ...++.|++|++..-+|. ....++.+.|.++-=+...
T Consensus 179 ~~~~g-~~~faNpRNaaAGslr-q~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~~~~--------- 243 (305)
T 4glw_A 179 RQENG-EPEFANPRNAAAGTLR-QLDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFVVNP--------- 243 (305)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHS-SSBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCCCCC---------
T ss_pred HHhcC-CccchhhhHHHhhhhh-ccCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCccCC---------
Confidence 00 01333222221 1111 111 135799999998765552 3678888989886322211
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCcc--cC--CCCCCe
Q 005331 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE--PG--DRSGKW 438 (702)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~--~G--~Rs~~W 438 (702)
....+.+.+++.+++++..+. .-.|||+|--+-.+. .| .+++.|
T Consensus 244 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~lG~tsk~PrW 297 (305)
T 4glw_A 244 -------------KRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKW 297 (305)
T ss_dssp -------------CCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECBHHHHHHHCBCSSSBSS
T ss_pred -------------ceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeCHHHHHHcCCcCCCCCc
Confidence 123457889999888877553 234999995433322 12 356667
No 26
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=97.47 E-value=1.5e-05 Score=84.03 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=104.5
Q ss_pred CceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhc---c----ccceeeeceEEEeeCC---
Q 005331 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV---L----VDRCILDGEMLVWDTS--- 309 (702)
Q Consensus 245 ~~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~---~----~~~~ILDGE~v~~d~~--- 309 (702)
..|++|+|+||..+.+++.+|. ++..|| .|+|+|.-...+.. +...+ . +..+.+-||++.-...
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~g~~~~~p~~leVRGEv~m~~~~F~~ 194 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSS-CCSBCCCBTTBCCCSCCEEEEEEBCCHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcC-CChhhccCCcCCCCCeEEEEEEEEEEHHHHHH
Confidence 3699999999999999987765 789999 78899864433321 11112 0 2347899999874210
Q ss_pred -------CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCccccc
Q 005331 310 -------LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (702)
Q Consensus 310 -------~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~ 377 (702)
.+. .+|..-+..+ ...|. .+ ...++.|++|++...++.. -.+..++.+.|.++-=++..
T Consensus 195 lN~~~~~~g~-~~faNPRNaAAGsLrq-ld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~~----- 265 (328)
T 1zau_A 195 LNASLVEEGK-APFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE----- 265 (328)
T ss_dssp HHHSCSSTTS-CCCSSHHHHHHHHHTC-SSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCCC-----
T ss_pred HHHHHHHcCC-ccccChHHHHHHHHHc-cChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCCC-----
Confidence 011 2454333322 11121 11 1357999999996545432 25788999999886433211
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCccc----CCCCCCe
Q 005331 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW 438 (702)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~~----G~Rs~~W 438 (702)
....+.+.+++.+++++..+. .-.|||+|--+-.|.. ..|++.|
T Consensus 266 -----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 266 -----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRW 319 (328)
T ss_dssp -----------------CCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSS
T ss_pred -----------------ceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCc
Confidence 122456788999999888655 5689999976655532 2466777
No 27
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=97.34 E-value=0.0014 Score=68.85 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=104.5
Q ss_pred ceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhc----cccceeeeceEEEeeCC-------
Q 005331 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------- 309 (702)
Q Consensus 246 ~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~----~~~~~ILDGE~v~~d~~------- 309 (702)
.|++|+|+||.-+-+.+.+|. ++..|| .|.|+|+-...+.. +...+ .+..+.+=||++.-...
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IPl~L~~~~~p~~leVRGEv~m~~~~F~~lN~~ 186 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRN-VPLQLLTDNPPARLEVRGEVFMPHAGFERLNKY 186 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTT-SCSBCSCSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcC-CCccccCCCCCceEEEEEEEEeeHHHHHHHHHH
Confidence 699999999999999887776 789999 46788853322211 10111 13457789999873210
Q ss_pred ---CCccccccchHHHH-HHhhcC---CCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCC
Q 005331 310 ---LNRFAEFGSNQEIA-KAARDG---LSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (702)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~r~~---~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~ 382 (702)
.+. .+|..-+..+ ...|.. .....++.|++|.+...+|..+ ..+..++.+.|.++-=++..
T Consensus 187 ~~~~g~-~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~---------- 254 (322)
T 3uq8_A 187 ALEHNE-KTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNP---------- 254 (322)
T ss_dssp HHHTTC-CCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCT----------
T ss_pred HHHhCC-ccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCC----------
Confidence 000 2333222221 111210 0124689999999987766432 35788999999886432221
Q ss_pred CCccccCCCCCccccccCCHHHHHHHHHHHHHCC------CceEEEecCCCCccc--C--CCCCCe---EEEccc
Q 005331 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWEP--G--DRSGKW---LKLKPE 444 (702)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g------~EGlV~K~~ds~Y~~--G--~Rs~~W---lKvK~~ 444 (702)
....+.+.+++.++++...+.+ -.|||+|--+-.+.. | .|.+.| +|+.++
T Consensus 255 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpae 317 (322)
T 3uq8_A 255 ------------EIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQ 317 (322)
T ss_dssp ------------TCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHHHHHHHCEETTEETTEEEEECCCG
T ss_pred ------------CcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHHHHHHcCccCCCCCceEEEcCCcc
Confidence 1234578899999999886543 369999965433321 1 355667 455543
No 28
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=97.33 E-value=0.00036 Score=68.29 Aligned_cols=179 Identities=12% Similarity=0.096 Sum_probs=118.0
Q ss_pred ccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHhhccccceeeec
Q 005331 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (702)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t---~~~p~l~~~~~~~~~~~~~ILDG 301 (702)
+.||++-+.++++-+. .+|++=+===|-||+|+...|....+||+|.-+. ...|+=... ......-+|||+
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCCTTCCEEEEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCCCCCCEEEEE
Confidence 5688887766544332 3698888889999999999999999999998653 222321000 000124689998
Q ss_pred eEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCC
Q 005331 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (702)
Q Consensus 302 E~v~~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (702)
= |++. .-+|+|.|+|..||.++.+-..+-|.-.|++-+.+.++.-+.- ...
T Consensus 79 I---~~e~-------------------------~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s-~~n 129 (204)
T 1xk5_A 79 I---YNEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKT-KLN 129 (204)
T ss_dssp E---EEGG-------------------------GTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCB-TTB
T ss_pred E---EecC-------------------------CcEEEEEEEEEECCceeecCcHHHHHHHHHHHhcccccccccc-ccC
Confidence 3 3321 0159999999999999999999999999999887754211100 000
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccc
Q 005331 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 446 (702)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~ 446 (702)
...+... ..+. -+.+.+.+++.....--.+|+.+=..++.|.+| .++-+.=+||..+
T Consensus 130 ~~~f~~l------p~~~-c~~~~l~~~~~~~~~~~~DGlLFyHK~a~Y~~G-~TPLv~WLkp~ml 186 (204)
T 1xk5_A 130 PFKFVGL------KNFP-CTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPG-STPLVGWLRPYMV 186 (204)
T ss_dssp SSEEEEC------CEEE-CSHHHHHHHHTCCCSSCEEEEEEEESSCCCCSE-EEEEEEEECGGGH
T ss_pred CcceEec------cccc-CCHHHHHHHHccCCCCCcceEEEEeccccccCC-CCChhhhcchhhc
Confidence 0011110 1222 246667776665555788999999999999999 4664444577544
No 29
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=97.18 E-value=0.0011 Score=69.45 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=116.6
Q ss_pred ccccccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCC---cchhhHHHHHHhhccccceeeec
Q 005331 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (702)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t---~~~p~l~~~~~~~~~~~~~ILDG 301 (702)
+.||++-+-.+++-+. .+|++=+===|.||+|....|....+||+|.-+. ...|+=...- .....-+||||
T Consensus 106 qlMlsEWl~dvP~dL~----~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~~~--s~~~~~TILDC 179 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRN--STAKDYTILDC 179 (365)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC------CCCCEEEEE
T ss_pred hHHHHHhcccCCcccc----cCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCccc--cCCCCCEEEEE
Confidence 5788887655543221 3688888888999999999999999999997643 2334311100 01245789998
Q ss_pred eEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCC
Q 005331 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (702)
Q Consensus 302 E~v~~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (702)
+|+.. .-+|+|.|||..+|.++.+.+..-|.-.|.+-+.+.++--+. ....
T Consensus 180 ---Iy~e~-------------------------~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~-s~~n 230 (365)
T 3gjx_B 180 ---IYNEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEK-TKLN 230 (365)
T ss_dssp ---EEETT-------------------------TTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSC-CSSC
T ss_pred ---EeecC-------------------------CceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccc-ccCC
Confidence 34431 116999999999999999999999999999988765321100 0000
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccc
Q 005331 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 446 (702)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~ 446 (702)
...+... | .+. .+.+.+..++..-..--..||.+=...+.|.+| .++-+.=+||..+
T Consensus 231 p~~Fv~l----p--~~~-C~~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G-~TPLVgWLkPyMv 287 (365)
T 3gjx_B 231 PFKFVGL----K--NFP-CTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPG-STPLVGWLRPYMV 287 (365)
T ss_dssp CSEEEEC----C--EEE-CCHHHHHHHTTCCCSSCEEEEEEEETTCCCCSE-EEEEEEEECHHHH
T ss_pred CCceecc----C--CCC-cCHHHHHHHhccCCCCccceEEEEeccccccCC-CCccceecchhhh
Confidence 0011100 1 222 345666666655455568899999999999998 4665555667544
No 30
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=97.10 E-value=0.00081 Score=70.44 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=103.8
Q ss_pred CCceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhcc-ccceeeeceEEEeeC---------
Q 005331 244 GKEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-VDRCILDGEMLVWDT--------- 308 (702)
Q Consensus 244 ~~~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~~-~~~~ILDGE~v~~d~--------- 308 (702)
.-.|++|+|+||.-+-+.+.+|. ++..|| .|.|+|.-...+.. +...+. ...+.+=||++.--.
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~levRGEv~m~~~~F~~lN~~~ 182 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHA-IPLKMKEPLNVEVRGEAYMPRRSFLRLNEEK 182 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcC-CccccCCCCcEEEEEEEEEcHHHHHHHHHHH
Confidence 34799999999999999887775 689999 57788853322211 000111 235788999987211
Q ss_pred -CCCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCC
Q 005331 309 -SLNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (702)
Q Consensus 309 -~~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~ 382 (702)
..+. .+|..-+..+ ...| ..+ ...++.|++|++...+|.. -.+..++.+.|.++-=++..
T Consensus 183 ~~~g~-~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~---------- 248 (318)
T 3jsl_A 183 EKNDE-QLFANPRNAAAGSLR-QLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNK---------- 248 (318)
T ss_dssp BTTBC-CCCSSHHHHHHHHHS-CSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCT----------
T ss_pred HHhCC-ccccChHHHHHHHHH-ccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCC----------
Confidence 0011 2444333322 1122 111 1368999999998765533 24788999999887432211
Q ss_pred CCccccCCCCCccccccCCHHHHHHHHHHHHH------CCCceEEEecCCCCccc--C--CCCCCe---EEEccc
Q 005331 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP--G--DRSGKW---LKLKPE 444 (702)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~------~g~EGlV~K~~ds~Y~~--G--~Rs~~W---lKvK~~ 444 (702)
....+.+.+++.+++++..+ -.-.|||+|--+-.+.. | .|.+.| +|+.++
T Consensus 249 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~ 311 (318)
T 3jsl_A 249 ------------NRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAE 311 (318)
T ss_dssp ------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC--
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCc
Confidence 12345788999999888743 34579999965433321 1 356677 566554
No 31
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=97.09 E-value=0.00085 Score=68.18 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=72.3
Q ss_pred cCCCceEEEEecceEEEEEEE--eCCE--EEEEeCCCC-----CCCcc---hhhHHHHHH---hhc-------cccceee
Q 005331 242 LHGKEVVIECKFDGDRIQIHK--NGSE--IHYFSRSFL-----DHSEY---GHAMSKIIE---QNV-------LVDRCIL 299 (702)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qvh~--~g~~--v~~~SR~g~-----d~t~~---~p~l~~~~~---~~~-------~~~~~IL 299 (702)
+.+..|.+.+|.||...-+.. +++. +++.||++. ++-.+ .+.+...+. +.+ ....+++
T Consensus 30 l~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~V 109 (277)
T 1xdn_A 30 LAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVL 109 (277)
T ss_dssp GGGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEE
T ss_pred CCCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 345689999999999999888 7887 999999974 22211 133322221 111 1478999
Q ss_pred eceEEEeeC---CC-----------CccccccchHHHHHHhhcCC--CCCCceEEEEEEEeeeCC---ccccCCCHHHHH
Q 005331 300 DGEMLVWDT---SL-----------NRFAEFGSNQEIAKAARDGL--SSDRQLCYFAFDVLYVGD---TSVIHQSLKERH 360 (702)
Q Consensus 300 DGE~v~~d~---~~-----------~~~~~F~~lq~~~~~~r~~~--~~~~~~~~~vFDiL~lng---~~l~~~pl~eRr 360 (702)
=||+..|.- .. .+..|+.. + ..+.+. .-.....|+||||.+.++ .+...+++.+=.
T Consensus 110 yGELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~-~----~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~ 184 (277)
T 1xdn_A 110 NGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG-V----QIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFV 184 (277)
T ss_dssp EEEEEEEECCCTTSCCCCCEEECTTSCEEEGGG-C----CSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHH
T ss_pred EEEEecCccCCccccccccccccCccccCcccc-c----ccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHH
Confidence 999998861 10 00012100 0 001121 111268899999998752 334578988877
Q ss_pred HHHHhh
Q 005331 361 ELLQKV 366 (702)
Q Consensus 361 ~~L~~~ 366 (702)
+.+.+.
T Consensus 185 ~~~~~~ 190 (277)
T 1xdn_A 185 EFSSKV 190 (277)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777764
No 32
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.06 E-value=0.00052 Score=70.43 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=40.6
Q ss_pred ccccccccCCcEEEEEeCCC----------------------------CCCHHHHHHHHHHcCCEEEEecCCC------e
Q 005331 650 IKGETSIFSDMVFYFVNVPP----------------------------AYSLDSLHKMVVENGGTFSMNLNNS------V 695 (702)
Q Consensus 650 ~~~~s~~f~g~~f~v~~~~~----------------------------~~~k~~l~~~i~~~gG~~~~n~~~~------~ 695 (702)
+...+.||.|+.||+-.... .++|++|+++|++|||++++..... .
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~ 88 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQ 88 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCE
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCC
Confidence 34578899999999943221 2588999999999999999876542 7
Q ss_pred eEEEec
Q 005331 696 THCVAN 701 (702)
Q Consensus 696 ~~~i~~ 701 (702)
|||||.
T Consensus 89 t~LIa~ 94 (259)
T 1kzy_C 89 CLLIAD 94 (259)
T ss_dssp EEEEES
T ss_pred eEEEcC
Confidence 899984
No 33
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.02 E-value=0.0028 Score=72.96 Aligned_cols=221 Identities=18% Similarity=0.233 Sum_probs=129.4
Q ss_pred ceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhcc----ccceeeeceEEEeeCC-------
Q 005331 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (702)
Q Consensus 246 ~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~~----~~~~ILDGE~v~~d~~------- 309 (702)
.|++|+|+||.-+-+.+.+|. ++..|| .|+|+|+-...+.. +...+. +..+.+=||++.-...
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~~~~F~~lN~~ 187 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINED 187 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 699999999999999888776 688999 56778753222211 000111 2337889999873210
Q ss_pred ---CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEeeeCC-ccccCCCHHHHHHHHHhhccCCCCcccccccC
Q 005331 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGD-TSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380 (702)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~r~~~~----~~~~~~~~vFDiL~lng-~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~ 380 (702)
.+. .+|..-+..+ ...| ..+ ...++.|++|++...+| .. -.+..++.+.|.++-=+....
T Consensus 188 ~~~~g~-~~faNpRNaaAGsLr-qld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~------- 256 (671)
T 2owo_A 188 ARRTGG-KVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSDR------- 256 (671)
T ss_dssp HHHSSC-CCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCTT-------
T ss_pred HHhcCC-CcccChHHHHHHHHH-hcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCCc-------
Confidence 000 2343322221 1112 111 24689999999976554 32 257889999999875332211
Q ss_pred CCCCccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCcc----cCCCCCCe---EEEcccccc
Q 005331 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIR 447 (702)
Q Consensus 381 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~----~G~Rs~~W---lKvK~~y~~ 447 (702)
...+.+.+++.+++++..+. .-.|+|+|--+-.+. .-.|.+.| +|+.++
T Consensus 257 ---------------~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae--- 318 (671)
T 2owo_A 257 ---------------VTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (671)
T ss_dssp ---------------CEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC---
T ss_pred ---------------ceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc---
Confidence 23457889999999887543 458999996544332 12467888 677775
Q ss_pred CCCcceEEEEEEEecCCCCCCccceEEEEEecCCC-CCCCCcceEEEEEecCCCCHHHHHHHH
Q 005331 448 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPA-PDTYPRRFISFCRVGTGLSDEELDAVV 509 (702)
Q Consensus 448 ~g~~~DlvVIG~~~G~G~r~g~~gs~llg~~d~~~-~~~~~~~~~~v~kVgtG~s~~~~~~l~ 509 (702)
..--.|.+-.|.-|| .|.+.-. |..+|-. + + .+|.++ |-.+.++.+++.
T Consensus 319 ---~~~T~l~~I~~qVGR-TG~iTPv--A~lePV~l~----G--~tVsrA-TLHN~d~i~~~d 368 (671)
T 2owo_A 319 ---EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHVA----G--VLVSNA-TLHNADEIERLG 368 (671)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEET----T--EEEEEE-ECCSHHHHHHHT
T ss_pred ---eEEEEEEEEEEecCC-CceeeeE--EEEEeEEEC----C--EEEEec-cCCCHHHHHHcC
Confidence 444566776776664 4555432 2222210 0 1 234444 666777776654
No 34
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.91 E-value=0.0089 Score=64.40 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=87.4
Q ss_pred CceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc--chhh---------HHHHHHhhccccceeeeceEEEeeCCCCcc
Q 005331 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHA---------MSKIIEQNVLVDRCILDGEMLVWDTSLNRF 313 (702)
Q Consensus 245 ~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~--~~p~---------l~~~~~~~~~~~~~ILDGE~v~~d~~~~~~ 313 (702)
.++.+++|+||.-+.+...+|++.+.||++..... .+.. +.+.+ ..+...++.+=||++. +. +++
T Consensus 93 ~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~-~~l~~~~~t~~fE~~~--pe-n~h 168 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRL-KELAEDGFTANFEFVA--PT-NRI 168 (375)
T ss_dssp GEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHH-HHHHHTTEEEEEEEEC--TT-SCS
T ss_pred CCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHH-HHhcCCCCEEEEEEcC--CC-Cce
Confidence 47999999999998887889999999999965431 1111 11111 1123578899999987 32 222
Q ss_pred -ccccchHHHHHHhhcCCCCCCceEEEEEEEeeeC-CccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCC
Q 005331 314 -AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG-DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQG 391 (702)
Q Consensus 314 -~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~ln-g~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~ 391 (702)
+++ .. ..+++||+-..+ |+- +|+.++.++.+ .--+...
T Consensus 169 Vl~Y----------------~~-~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~------------------- 208 (375)
T 2c5u_A 169 VLAY----------------QE-MKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVE------------------- 208 (375)
T ss_dssp SSCC----------------SS-CEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCC-------------------
T ss_pred eccC----------------CC-CCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCc-------------------
Confidence 222 12 469999998754 443 79999876654 2111110
Q ss_pred CCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccc
Q 005331 392 EPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPE 444 (702)
Q Consensus 392 ~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~ 444 (702)
++. -+..++.+.... ..+.||+|++..+ | .++|+|.+
T Consensus 209 --~~~---~~l~ell~~~~~--~~~~EGfVir~~~-----g----~~~K~Kt~ 245 (375)
T 2c5u_A 209 --RYE---IDSPKWIEEAKN--AENIEGYVAVMKD-----G----SHFKIKSD 245 (375)
T ss_dssp --EEE---CSSTHHHHHHHH--CSSCCEEEEEETT-----S----CEEEEECH
T ss_pred --eee---ccHHHHHHHHhh--CCCCceEEEEecC-----C----CEEEEecH
Confidence 111 112333333322 5789999999874 2 49999995
No 35
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=96.84 E-value=0.0015 Score=59.92 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=45.9
Q ss_pred cccCCccCccccccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 642 FLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 642 ~~~~~~~~~~~~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+..|+.-....+.+|+|+.|||. +......+.|+.+|..|||+++...++.+||+|+.
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i~-G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~ 84 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYLC-GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVG 84 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEEE-SCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEES
T ss_pred hhhcCcccccccccccCCEEEEEE-CCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEEC
Confidence 344454444556789999999997 33345678899999999999998877789999985
No 36
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.0011 Score=60.59 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=41.2
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.+|+|+.||| ++....++++|+++|.++||++..+....+||+|++
T Consensus 19 ~~~~f~g~~i~i-tG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~ 66 (129)
T 2d8m_A 19 LGKILQGVVVVL-SGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICA 66 (129)
T ss_dssp HTTTSTTEEEEE-ESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEES
T ss_pred ccccCCCeEEEE-eCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEec
Confidence 456899999997 444456789999999999999998888789999986
No 37
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=96.63 E-value=0.0011 Score=58.36 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=39.4
Q ss_pred cccccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEe
Q 005331 651 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700 (702)
Q Consensus 651 ~~~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~ 700 (702)
...+.+|+|+.|||-.... .++.+|+++|.++||++....+..+||+|+
T Consensus 10 ~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~ 58 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIY 58 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEEC
T ss_pred ccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEe
Confidence 3467899999999863333 688999999999999999988888999998
No 38
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=96.58 E-value=0.002 Score=56.59 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=40.6
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
-++|.|+.||+-.......+..|+.+|.++||+++-..++.+||+|+.
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~ 52 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITA 52 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEES
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeC
Confidence 469999999997654345788999999999999887787789999985
No 39
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=96.55 E-value=0.0039 Score=70.86 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=116.8
Q ss_pred ceEEEEecceEEEEEEEeCCE-EEEEeC----CCCCCCcchhhHHHHHHhhcc-------ccceeeeceEEEeeC-----
Q 005331 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-------VDRCILDGEMLVWDT----- 308 (702)
Q Consensus 246 ~~~~E~K~DG~R~qvh~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~~-------~~~~ILDGE~v~~d~----- 308 (702)
.|++|+|+||.-+-+.+.+|. ++..|| .|+|+|+-...+.. +...+. +..+.+=||++.--.
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSS-SCSSCCCCSSCCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcC-cchhhcCCcccCCCCeEEEEEEEEEeHHHHHHH
Confidence 699999999999999988776 689999 67888853222111 000111 335788999987311
Q ss_pred --C---CCccccccchHHHH-HHhhcCCCC----CCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccc
Q 005331 309 --S---LNRFAEFGSNQEIA-KAARDGLSS----DRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 378 (702)
Q Consensus 309 --~---~~~~~~F~~lq~~~-~~~r~~~~~----~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~ 378 (702)
. .+. .+|..-+..+ ...|. .++ ..++.|++|++...+|.. -....++.+.|.++-=+...
T Consensus 196 N~~~~~~g~-~~faNpRNaAAGsLRq-ld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~------ 265 (615)
T 3sgi_A 196 NASLVEEGK-APFANPRNSAAGSLRQ-KDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE------ 265 (615)
T ss_dssp HTTCSSSSS-CCCSSHHHHHHHHHTC-SSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCC------
T ss_pred HHHHHHcCC-CcCCChHHHHHHHHHc-CChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCC------
Confidence 0 111 3454433322 22221 222 368999999998776532 23566888888876322211
Q ss_pred cCCCCCccccCCCCCccccccCCHHHHHHHHHHHH------HCCCceEEEecCCCCccc----CCCCCCe---EEEcccc
Q 005331 379 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI------ENRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEY 445 (702)
Q Consensus 379 p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai------~~g~EGlV~K~~ds~Y~~----G~Rs~~W---lKvK~~y 445 (702)
....+.+.+++.+++++.. .-.-.|||+|--+-.+.. -.|.+.| +|+.++
T Consensus 266 ----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpae- 328 (615)
T 3sgi_A 266 ----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE- 328 (615)
T ss_dssp ----------------CCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCS-
T ss_pred ----------------CeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCc-
Confidence 1234578899999887763 345689999975544322 2367889 787776
Q ss_pred ccCCCcceEEEEEEEecCCCCCCccc
Q 005331 446 IRAGSDLDVLIIGGYYGSGRRGGEVA 471 (702)
Q Consensus 446 ~~~g~~~DlvVIG~~~G~G~r~g~~g 471 (702)
+.--.|.+-.+.-|| .|.+.
T Consensus 329 -----e~~T~l~~I~~qVGR-TG~iT 348 (615)
T 3sgi_A 329 -----EAQTKLLDIRVNVGR-TGRIT 348 (615)
T ss_dssp -----EEEEECCEECCCBCS-SSCBC
T ss_pred -----eeEEEEEEEEEecCC-Cceee
Confidence 334455666666654 45554
No 40
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.40 E-value=0.0064 Score=69.90 Aligned_cols=192 Identities=18% Similarity=0.197 Sum_probs=114.7
Q ss_pred ceEEEEecceEEEEEEEeCCEEEEEeC----CCCCCCcchhhHHHHHHhhcc--ccceeeeceEEEeeCCC---C-----
Q 005331 246 EVVIECKFDGDRIQIHKNGSEIHYFSR----SFLDHSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSL---N----- 311 (702)
Q Consensus 246 ~~~~E~K~DG~R~qvh~~g~~v~~~SR----~g~d~t~~~p~l~~~~~~~~~--~~~~ILDGE~v~~d~~~---~----- 311 (702)
.|++|+|+||.-+ +.+.+|. +..|| .|+|+|+-...+.. +...+. +..+.+=||++.-...- +
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~~l~~~p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTT-SCSBCSSCCSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcC-CCcccCCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 4999999999999 8888888 99999 57789864333221 111111 33478899998731100 0
Q ss_pred -ccccccchHHHH-HHhhcCCC----CCCce--EEEEEEEee-eCCccccCCCHHHHHHHHHhhccCCCCcccccccCCC
Q 005331 312 -RFAEFGSNQEIA-KAARDGLS----SDRQL--CYFAFDVLY-VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (702)
Q Consensus 312 -~~~~F~~lq~~~-~~~r~~~~----~~~~~--~~~vFDiL~-lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~ 382 (702)
.-.+|..-+..+ ...| ..+ ...++ .|++|++++ .++.. -.+..++.+.|.++-=+....
T Consensus 187 ~g~~~faNpRNaaAGsLr-qld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~--------- 254 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLR-QKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEHC--------- 254 (667)
T ss_dssp HTCCCCSSHHHHHHHHHS-CSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCSC---------
T ss_pred cCCCcccChHHHHHHHHH-hcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCcc---------
Confidence 001232222211 1111 111 13578 999999851 13221 257888999998864332211
Q ss_pred CCccccCCCCCccccccCCHHHHHHHHHHHHHC------CCceEEEecCCCCccc----CCCCCCe---EEEccccccCC
Q 005331 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEYIRAG 449 (702)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~ds~Y~~----G~Rs~~W---lKvK~~y~~~g 449 (702)
...+.+.+++.+++++.-+. .-.|+|+|--+-.+.. -.|.+.| +|+.++
T Consensus 255 -------------~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae----- 316 (667)
T 1dgs_A 255 -------------YEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE----- 316 (667)
T ss_dssp -------------EEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCC-----
T ss_pred -------------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCc-----
Confidence 22456789999999887653 4589999965544321 2467888 677775
Q ss_pred CcceEEEEEEEecCCCCCCccce
Q 005331 450 SDLDVLIIGGYYGSGRRGGEVAQ 472 (702)
Q Consensus 450 ~~~DlvVIG~~~G~G~r~g~~gs 472 (702)
..--.|.+-.|.-|| .|.+.-
T Consensus 317 -~~~T~l~~I~~qVGR-TG~iTP 337 (667)
T 1dgs_A 317 -EKETRLLDVVFQVGR-TGRVTP 337 (667)
T ss_dssp -CEEEEEEEEEEEECT-TSBEEE
T ss_pred -eEEEEEEEEEEecCC-Cceeee
Confidence 444566777776664 455543
No 41
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=95.83 E-value=0.044 Score=57.67 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=109.2
Q ss_pred ChHHHHHHcC---CCceEEEEecceEEEEEEEe--------------CCEEEEEeCCCCCCCcchhhHH----HHHHh--
Q 005331 234 DAHAAWRKLH---GKEVVIECKFDGDRIQIHKN--------------GSEIHYFSRSFLDHSEYGHAMS----KIIEQ-- 290 (702)
Q Consensus 234 ~~~~~~~~~~---~~~~~~E~K~DG~R~qvh~~--------------g~~v~~~SR~g~d~t~~~p~l~----~~~~~-- 290 (702)
.+.+++..+. =....+|+|.=|-|+++.+. |..-.+|||+|..+-+. +++. +.+..
T Consensus 67 HP~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~ 145 (427)
T 4e6n_A 67 HPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVL 145 (427)
T ss_dssp CHHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHH
Confidence 4556665442 24799999999999987642 22457999999987531 2222 22211
Q ss_pred -------hccccceeeeceEEEeeCCCC-----ccccccchH---------HHHHHhh--------------cC------
Q 005331 291 -------NVLVDRCILDGEMLVWDTSLN-----RFAEFGSNQ---------EIAKAAR--------------DG------ 329 (702)
Q Consensus 291 -------~~~~~~~ILDGE~v~~d~~~~-----~~~~F~~lq---------~~~~~~r--------------~~------ 329 (702)
.+..+=+.||||++.|+-+.+ .+.|-|.-. .+..+.. .+
T Consensus 146 ~~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~L 225 (427)
T 4e6n_A 146 DKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINEL 225 (427)
T ss_dssp HHHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHH
T ss_pred HhcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHH
Confidence 122344789999999974321 111111100 0000000 00
Q ss_pred ------------------------CCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCc
Q 005331 330 ------------------------LSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (702)
Q Consensus 330 ------------------------~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (702)
.++-..+.+.-|-||-..|....+.|-.-=.+.+..+....++.+ .+..-+
T Consensus 226 l~r~~~r~~~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l~---~~T~~~-- 300 (427)
T 4e6n_A 226 LQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLI---MATNHI-- 300 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTTB---CCCCEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCccce---eccccE--
Confidence 011235899999999999999999999988888888776554321 111000
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCC
Q 005331 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK 428 (702)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~ 428 (702)
.|.+ ....+.++...++.+.-+.|.||+|+|..+..
T Consensus 301 ~VDl-------~d~~s~~~a~~WW~~lT~~GgEGMVVKP~~~~ 336 (427)
T 4e6n_A 301 LVDV-------TDAESVDKGIKWWEDLTASGGEGMVVKPYDFI 336 (427)
T ss_dssp EEET-------TCHHHHHHHHHHHHHHHHTTCCEEEEEESSSS
T ss_pred EeeC-------CCHHHHHHHHHHHHHHhcCCCceeEecchhhh
Confidence 0000 01134566778999999999999999987544
No 42
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=95.82 E-value=0.004 Score=55.38 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred cccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 655 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 655 ~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+|+|+.+|+- +-....+.+|+++|.+|||++........||.|+.
T Consensus 20 p~F~g~~Ic~s-Gf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~ 65 (112)
T 3l46_A 20 PPFQDCILSFL-GFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVE 65 (112)
T ss_dssp CTTTTCEECEE-SCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEEC
T ss_pred CccCCeEEEEe-CCCHHHHHHHHHHHHHcCCEECcccCCCceEEEec
Confidence 48999999994 43345689999999999999998877789999985
No 43
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=95.74 E-value=0.0038 Score=52.91 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=37.7
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCC-CeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-SVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~-~~~~~i~~ 701 (702)
-.++|.|+.|+|-.+-... ..|+..|.++||++++..+. .+||+|+.
T Consensus 13 LpdiFsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~~~~~vTHvI~~ 60 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEFDMTSATHVLGS 60 (88)
T ss_dssp CCCCSTTCEECCCTTSTTH--HHHHHHHHHTTCEECCGGGGGGCSEEESC
T ss_pred CChhhcCeEEEccCCcCch--hhheeeeeecCCEEecccCCCcCeEEecC
Confidence 3579999999996554322 68999999999999997654 69999974
No 44
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.28 E-value=0.0065 Score=53.67 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=39.1
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
..+|+|+.+|+- +-....+.+|.++|.+|||++..+....+||.|+.
T Consensus 10 ~~~F~g~~i~~s-g~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~ 56 (109)
T 2cou_A 10 VPPFQDCILSFL-GFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVE 56 (109)
T ss_dssp CCTTTTCBEEEE-SSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEEC
T ss_pred CCcCCCeEEEec-CCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEe
Confidence 458999999984 33334678999999999999998777789999985
No 45
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=94.48 E-value=0.056 Score=47.66 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=39.4
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.|.|+.||+--.-..+++++++++|.++||++.-+++...+|+|+.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G 77 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMG 77 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEEC
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEEC
Confidence 356999999876444567999999999999999998888766777764
No 46
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=94.42 E-value=0.017 Score=56.63 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.9
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEe
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~ 700 (702)
...+|+|+.|+.+++....++++|+.+|..+||++++++.. .++||+
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-~~iiI~ 162 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-ASIVIG 162 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG-CSEEES
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCC-CEEEEe
Confidence 35799999876676666678899999999999999998864 556654
No 47
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=94.20 E-value=0.039 Score=47.12 Aligned_cols=48 Identities=6% Similarity=0.141 Sum_probs=38.2
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
..+.|.|+.||+--.-.. ++++++++|.++||++.-+.+...+|.|+.
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g 51 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVG 51 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEEC
T ss_pred CCCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeC
Confidence 345799999986533334 999999999999999998888767777764
No 48
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.031 Score=47.63 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=32.2
Q ss_pred ccccCCcEEEEEeCCC----CCCHHHHHHHHHHcCCEEEEecC
Q 005331 654 TSIFSDMVFYFVNVPP----AYSLDSLHKMVVENGGTFSMNLN 692 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~----~~~k~~l~~~i~~~gG~~~~n~~ 692 (702)
..+|+|+.|++-.+.. ...+++|+++|..|||+|+....
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP 51 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKP 51 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECC
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCc
Confidence 4569999999976553 34689999999999999998853
No 49
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.82 E-value=0.082 Score=46.83 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=38.9
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.|.|+.||+--.-..+++++++++|.++||++.-+.....+|+|+.
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G 67 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMG 67 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEEC
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEec
Confidence 356999999875444567999999999999999998888766777764
No 50
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=93.64 E-value=0.049 Score=62.59 Aligned_cols=88 Identities=25% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHhhhchHhHHHHHHHHHHhCCHHHHHHHHHHHhhhh--------ccCccccccccccCc------
Q 005331 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLGISEKSIFHEFHP------ 187 (702)
Q Consensus 122 ~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~t~~E~k~l~RiIlk~l--------riG~~e~~il~~~hp------ 187 (702)
+++...++-++|++|+..+++.+|.++|..+|+..++++.-|.++++++.| +.|++++++.+++..
T Consensus 19 ~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g~~~ 98 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDE 98 (621)
T ss_dssp --CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHTCCH
T ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHCcCH
Confidence 568899999999999999999999999999999999999999999998775 789999988776522
Q ss_pred -CHHHHHhhhCCHHHHHHHHhhh
Q 005331 188 -DAEDLFNVTCDLKLVCEKLKDR 209 (702)
Q Consensus 188 -da~~~~~~~~dL~~V~~~L~~~ 209 (702)
...+.|+...||+.|+..+...
T Consensus 99 ~~~~~~~~~~GDlg~~a~~~~~~ 121 (621)
T 2hiv_A 99 NSVENLYKTIGDLGEVARRLKSK 121 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Confidence 3456788899999999988753
No 51
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=93.32 E-value=0.046 Score=57.00 Aligned_cols=47 Identities=30% Similarity=0.390 Sum_probs=40.2
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
+..|+|+.||+-.-+ ...+++|.++|.++||+++.+.+..+||+|+.
T Consensus 103 ~~~l~g~~~~~tG~~-~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~ 149 (298)
T 3olc_X 103 NMVMSDVTISCTSLE-KEKREEVHKYVQMMGGRVYRDLNVSVTHLIAG 149 (298)
T ss_dssp CCTTTTCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCTTCCEEEES
T ss_pred ccccCCeEEEeCCCc-HHhHHHHHHHHHHCCCEEecCcCCCeeEEEEe
Confidence 568999999995433 34789999999999999999988889999986
No 52
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=93.30 E-value=0.081 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=31.7
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEE
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM 689 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~ 689 (702)
..+|+|+.||+.......++++|+.+|.++||+++.
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~ 137 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILS 137 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEES
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEe
Confidence 579999999998755567899999999999999995
No 53
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=93.07 E-value=0.021 Score=50.23 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=38.4
Q ss_pred ccccccCCcEEEEEeCCCCCCH-HHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 652 GETSIFSDMVFYFVNVPPAYSL-DSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 652 ~~s~~f~g~~f~v~~~~~~~~k-~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
....+|+|+.||++......+. +-..+.++++||+++...++.+||+|+.
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd 57 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVD 57 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEEC
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEc
Confidence 3578999999999755433333 3345588999999998887789999984
No 54
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=92.69 E-value=0.1 Score=51.05 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=34.6
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCC
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN 693 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~ 693 (702)
...+|+|+.||+...-...++++|+.+|..+||+++.+...
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~ 152 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS 152 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGG
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccc
Confidence 45799999999986555568999999999999999988643
No 55
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=91.87 E-value=0.14 Score=50.87 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=32.9
Q ss_pred cccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCC
Q 005331 655 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN 693 (702)
Q Consensus 655 ~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~ 693 (702)
.+|+|+.||+.......++++|+.+|..+||+++.+...
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~ 154 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPL 154 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSC
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCccc
Confidence 699999999976544567999999999999999998754
No 56
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=91.71 E-value=0.2 Score=44.45 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=35.5
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEe
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~ 700 (702)
...|.|+.|+|. +.-..+.+++.++|.++||++.-......+|.|+
T Consensus 8 ~~~l~G~~~ViT-G~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~ 53 (113)
T 2cok_A 8 DKPLSNMKILTL-GKLSRNKDEVKAMIEKLGGKLTGTANKASLCIST 53 (113)
T ss_dssp CCSSSSCEEEEC-SCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECC
T ss_pred CCCcCCCEEEEE-ecCCCCHHHHHHHHHHCCCEEcCccccCccEEEE
Confidence 457999998765 4333499999999999999998887774455554
No 57
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=89.90 E-value=0.44 Score=47.17 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=31.4
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEec
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL 691 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~ 691 (702)
...+|+|+.||+..+ ...+.++|+.+|..+||+++.+.
T Consensus 119 ~~~LF~G~~f~it~~-~~~~~~~l~~lI~~~GG~v~~~~ 156 (219)
T 3sqd_A 119 VSPLFKAKYFYITPG-ICPSLSTMKAIVECAGGKVLSKQ 156 (219)
T ss_dssp HSCTTTTEEEEECTT-CSSCHHHHHHHHHHTTCEEESSC
T ss_pred cccccCCcEEEEeCC-CCCCHHHHHHHHHHCCCEEECCC
Confidence 457999999998654 23468999999999999999874
No 58
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=89.70 E-value=0.43 Score=41.77 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=37.5
Q ss_pred cccCCcEEEE-EeC-CCC-CCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 655 SIFSDMVFYF-VNV-PPA-YSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 655 ~~f~g~~f~v-~~~-~~~-~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+|+|+.+|| +.. +.. ..-+.|..++..+||+++......+||+|+.
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~ 55 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFK 55 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEE
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEe
Confidence 3899999999 332 222 2346799999999999999988889999984
No 59
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=89.36 E-value=0.17 Score=52.76 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=38.7
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecC-CCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~-~~~~~~i~~ 701 (702)
..+|+|+.||+-. -...++++|.++|.++||+++.... ..+||+|+.
T Consensus 197 ~~~f~g~~i~~tG-~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~ 244 (298)
T 3olc_X 197 CPIFLGCIICVTG-LCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQ 244 (298)
T ss_dssp CCTTTTCEEEECS-CCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECS
T ss_pred ccccCCeEEEEeC-CCCccHHHHHHHHHHcCCEEeceecCCCceEEEEe
Confidence 4689999998853 3233789999999999999998877 579999985
No 60
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.24 E-value=0.29 Score=43.84 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=38.7
Q ss_pred cccccCCcEEEEEeCCC-CCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~-~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
...+|.|+..|++...- +.-.+=+.+++..+||+++-...+.+||+|+.
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve 66 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAE 66 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEES
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEec
Confidence 45799999999976542 22345668899999999998777789999985
No 61
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=88.50 E-value=0.34 Score=51.99 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred cccccCCcEEEEEeC---CCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNV---PPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~---~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.+|+|..||+-.- ..+....+|.++|.++||+++.+.+..+||+||+
T Consensus 279 k~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~ 330 (372)
T 3ef0_A 279 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAA 330 (372)
T ss_dssp HTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEEC
T ss_pred HhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEc
Confidence 357899999988432 1234568999999999999999988889999986
No 62
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=87.83 E-value=0.34 Score=54.93 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhhhchHhHHHHHHHHHHhCCHHHHHHHHHHHhhhhc-------cCccccccccccCc-------CHH
Q 005331 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-------LGISEKSIFHEFHP-------DAE 190 (702)
Q Consensus 125 Ti~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~t~~E~k~l~RiIlk~lr-------iG~~e~~il~~~hp-------da~ 190 (702)
...++-+++++|+..+++.+|.++|..+|+..++++..|.++++++.+- .|++++++.+++.. ...
T Consensus 2 ~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~~~~~ 81 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDAKEIE 81 (561)
T ss_dssp BHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4567889999999999999999999999999999999999999987653 69999988876521 245
Q ss_pred HHHhhhCCHHHHHHHHhhh
Q 005331 191 DLFNVTCDLKLVCEKLKDR 209 (702)
Q Consensus 191 ~~~~~~~dL~~V~~~L~~~ 209 (702)
+.|+...||+.++..+...
T Consensus 82 ~~~~~~GDlg~~~~~~~~~ 100 (561)
T 2cfm_A 82 ESVKDTGDLGESIALAVKK 100 (561)
T ss_dssp HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcc
Confidence 6788899999999988754
No 63
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=87.76 E-value=0.41 Score=48.76 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=36.8
Q ss_pred cccccCCcEEEEEeC-----C-CCC---CHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNV-----P-PAY---SLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~-----~-~~~---~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
...||+|+.|||-.. + ... ..+-++.+|..+||+++-+.++.+||+|+.
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~ 218 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIG 218 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEEC
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEEC
Confidence 468999999999421 1 111 223358899999999999888889999985
No 64
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=87.74 E-value=0.51 Score=53.36 Aligned_cols=85 Identities=18% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhhhchHhHHHHHHHHHHhCCHH-HHHHHHHHHhhhh-------ccCcccccccccc----Cc---C
Q 005331 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-EMKWIIMIILKDL-------KLGISEKSIFHEF----HP---D 188 (702)
Q Consensus 124 lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~t~~-E~k~l~RiIlk~l-------riG~~e~~il~~~----hp---d 188 (702)
+...++-+++++|+..+++.+|.++|+.+|+..+|+ +.-++++++++.+ .+|++++++.+++ +- .
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~~~~ 83 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVKRSE 83 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcCHHH
Confidence 678889999999999999999999999999999998 8899999998765 3699999886644 21 2
Q ss_pred HHHHHhhhCCHHHHHHHHhh
Q 005331 189 AEDLFNVTCDLKLVCEKLKD 208 (702)
Q Consensus 189 a~~~~~~~~dL~~V~~~L~~ 208 (702)
..+.|+...||+.++..+..
T Consensus 84 ~~~~~~~~GDlg~~a~~~~~ 103 (558)
T 3gde_A 84 IESMIREYGDLGLVAEQLIK 103 (558)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 45678889999999988754
No 65
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=86.94 E-value=0.55 Score=46.57 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=31.5
Q ss_pred ccccCCcEEEEEeCCC-CCCHHHHHHHHHHcCCEEEEec
Q 005331 654 TSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNL 691 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~-~~~k~~l~~~i~~~gG~~~~n~ 691 (702)
..+|+|+.||+..... ..+.++|+.+|+.+||+++..|
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p 149 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLN 149 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEEC
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhh
Confidence 5799999999875431 4578999999999999999844
No 66
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=85.59 E-value=0.46 Score=51.97 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred cccccCCcEEEEEeC---CCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNV---PPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~---~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.+|+|..||+--- ....+.++|.++|.++||+++......+||.||+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~ 400 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAA 400 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEEC
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeC
Confidence 578999999988532 2234568999999999999999988889999986
No 67
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=83.99 E-value=0.99 Score=44.11 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=31.1
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecC
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN 692 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~ 692 (702)
..+|+|+.||+.... ..+.++|..+|..+||+++....
T Consensus 113 ~~lF~g~~~~~~~~~-~~~~~~l~~li~~~GG~v~~~~~ 150 (209)
T 2etx_A 113 RRLLEGYEIYVTPGV-QPPPPQMGEIISCCGGTYLPSMP 150 (209)
T ss_dssp SCTTTTCEEEECTTC-SSCHHHHHHHHHHTTCEECSSCC
T ss_pred CCCcCCcEEEEeCCC-CCCHHHHHHHHHHCCCEEECCCC
Confidence 479999999997543 34678999999999999987654
No 68
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=83.77 E-value=0.71 Score=53.54 Aligned_cols=87 Identities=14% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhchHhHHHHHHHHHHh---CCHHHHHHHHHHHhhhh-------ccCccccccccccCc---
Q 005331 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKK---TNAQEMKWIIMIILKDL-------KLGISEKSIFHEFHP--- 187 (702)
Q Consensus 121 ~~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~---~t~~E~k~l~RiIlk~l-------riG~~e~~il~~~hp--- 187 (702)
.+++...++-+++++|+..+++.+|..+|..+|+. ++|.++-|.+.++++.+ .+|++++++.+++..
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 46789999999999999999999999999999998 89999999999999765 469999988765421
Q ss_pred ----CHHHHHhhhCCHHHHHHHHh
Q 005331 188 ----DAEDLFNVTCDLKLVCEKLK 207 (702)
Q Consensus 188 ----da~~~~~~~~dL~~V~~~L~ 207 (702)
...+.|+...||+.|+..+.
T Consensus 133 ~~~~~~~~~~~~~GDlg~va~~~~ 156 (688)
T 1x9n_A 133 RQLESVRAEAAEKGDVGLVAENSR 156 (688)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCC--
T ss_pred cCHHHHHHHHHhcCCHHHHHHHHH
Confidence 24567888899999886543
No 69
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=80.52 E-value=0.53 Score=47.72 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=21.6
Q ss_pred ccccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEe
Q 005331 652 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700 (702)
Q Consensus 652 ~~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~ 700 (702)
....+|+|+.||+.........+-|+.+|..+||+++-.....+||+|+
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~ 204 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIP 204 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEe
Confidence 3467999999999754333445667899999999998776654555554
No 70
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=80.50 E-value=0.55 Score=42.53 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=39.5
Q ss_pred cccccCCcEEEEEeCC-CCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 653 ETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~-~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+..|.|+..||+.-. .+.-.+=|++++.++||++.-..++.|||+|+.
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E 56 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVME 56 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEES
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEec
Confidence 3568999999998642 333356789999999999988888889999985
No 71
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=67.03 E-value=6.6 Score=39.64 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=31.4
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL 691 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~ 691 (702)
..+|+|+.||+......-.++.+..++..+||+++...
T Consensus 153 ~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~ 190 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQH 190 (259)
T ss_dssp CCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEecc
Confidence 57999999999876544456788899999999988775
No 72
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=62.43 E-value=8.1 Score=38.57 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhchHhHHHHHHHHHHhC-------------CHHHHHHHHHHHhhhh-----ccCccccccc
Q 005331 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT-------------NAQEMKWIIMIILKDL-----KLGISEKSIF 182 (702)
Q Consensus 121 ~~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~-------------t~~E~k~l~RiIlk~l-----riG~~e~~il 182 (702)
..++.-.++-+++++|+..+++.+|..+|..+|++. .+.+.-.++|.|+=+. ..|++++++.
T Consensus 11 ~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~ 90 (240)
T 4htp_A 11 ASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLA 90 (240)
T ss_dssp GGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHH
Confidence 357889999999999999999999999999999873 3556788888888764 3899999887
Q ss_pred ccc----C--c---CHHHH---------HhhhCCHHHHHHHHh
Q 005331 183 HEF----H--P---DAEDL---------FNVTCDLKLVCEKLK 207 (702)
Q Consensus 183 ~~~----h--p---da~~~---------~~~~~dL~~V~~~L~ 207 (702)
+++ + + ++.++ |.-..||+.||..+.
T Consensus 91 Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~ 133 (240)
T 4htp_A 91 KLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVL 133 (240)
T ss_dssp HHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHH
Confidence 653 2 1 23333 344579999998765
No 73
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=58.10 E-value=4.9 Score=39.98 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=33.3
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecC----CCeeEEEe
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN----NSVTHCVA 700 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~----~~~~~~i~ 700 (702)
..+|+|+.||+...+ ...+.|+.+|...||+++.... ...|||++
T Consensus 133 ~~lF~g~~v~l~~~~--~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~v 181 (235)
T 3al2_A 133 EGAFSGWKVILHVDQ--SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFS 181 (235)
T ss_dssp SSTTTTCEEEEECCH--HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEE
T ss_pred CCCCCCcEEEEecCC--CcHHHHHHHHHcCCcEEecCCCCCccccCceEEE
Confidence 469999999998642 2457899999999999985421 12578865
No 74
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=52.51 E-value=12 Score=33.08 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=27.9
Q ss_pred cccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEe
Q 005331 653 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMN 690 (702)
Q Consensus 653 ~s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n 690 (702)
...||+|..|.++|...- ..|..+|...||...-.
T Consensus 10 ~~~LF~GKtFvFLn~KQ~---kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAKQY---KKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEESCSSTH---HHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEEeCHHHH---HHHHHHHHhcCceEEec
Confidence 357999999999986532 56889999999997544
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=48.92 E-value=3.6 Score=47.28 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.|.|+.||+--.-..+++++++++|.++||++.-+.+...++.|+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G 642 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAG 642 (671)
T ss_dssp ------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEEC
Confidence 457999999875444567899999999999999998888755555543
No 76
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=43.36 E-value=5 Score=46.11 Aligned_cols=47 Identities=9% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccccCCcEEEEEeCCCCCCHHHHHHHHHHcCCEEEEecCCCeeEEEec
Q 005331 654 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAN 701 (702)
Q Consensus 654 s~~f~g~~f~v~~~~~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~~ 701 (702)
.+.|.|+.||+--.-.. ++++++++|.++||++.-+.+...+|.|+.
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G 631 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVG 631 (667)
T ss_dssp ------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEEC
Confidence 45799999987533334 899999999999999998888755555543
No 77
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=39.99 E-value=71 Score=35.99 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCchHhhhHhhcCCCCCCCccccCCCHHHHHHHHHHHhCCCcCh
Q 005331 5 EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84 (702)
Q Consensus 5 ~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lrLllp~~d~~r~~ygike~~L~k~~~~~~~l~~~s 84 (702)
+++.-.++-+.|++|++.++...+..+|..++.+. .+.+.-=++|+|+-++. .|++++++-.+++. +
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~-~~~E~k~l~R~i~~~lr-----iG~~e~~vl~a~~~------~- 182 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC-TANDLKCIIRLIKHDLK-----MNSGAKHVLDALDP------N- 182 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC-CSHHHHHHHHHHTTCCS-----SSCCHHHHHHTTCT------T-
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhh-----cccchhHHHHHhCH------H-
Confidence 46788999999999999998888888899998764 67888889999998872 89999988777652 2
Q ss_pred HHHHHHhhhhcCCCCCCCCCHHHHHHHHhh
Q 005331 85 ADAVRLINWRKGGAAPNAGNFPMVAAEVLQ 114 (702)
Q Consensus 85 ~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~ 114 (702)
+.++.+ .++|+..+|..++.
T Consensus 183 --a~~~~~--------~~~~l~~v~~~~~~ 202 (579)
T 3l2p_A 183 --AYEAFK--------ASRNLQDVVERVLH 202 (579)
T ss_dssp --HHHHHH--------HSCCHHHHHHHHHH
T ss_pred --HHHHHh--------hcCCHHHHHHHHHh
Confidence 333322 24688888766543
No 78
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=39.06 E-value=30 Score=31.32 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcC-C-------hhHHHHHHHHHhhhcCCCchHhhhHhhcCCCCCCCccccC
Q 005331 12 LVSLFNWIQKTK-P-------AAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYG 64 (702)
Q Consensus 12 l~~~~e~i~~~~-~-------~~~k~~~l~~~l~~~~~~~~~~~~lrLllp~~d~~r~~yg 64 (702)
|.++|++|.... + ...-..-|+.||.. +||+.|++| +|-
T Consensus 62 L~eVf~~i~~ke~g~~~~i~~~Kas~~eL~~yf~e-------------VLP~yD~dR-Vy~ 108 (142)
T 2l5q_A 62 LSEVLEAVKKKENGAVASINYKKASADELHAYFAE-------------VLPNYDRDR-VHN 108 (142)
T ss_dssp HHHHHHHHHTTTTTCCCSSCTTTSCHHHHHHHHTT-------------TCTTCCSSS-TTS
T ss_pred HHHHHHHHHHHhcCCccccccccCCHHHHHHHHHH-------------hCCCCcccc-cch
Confidence 446777776532 1 11123456677765 699999985 783
No 79
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.82 E-value=1.3e+02 Score=30.52 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=48.3
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
++..|. ....++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|++
T Consensus 41 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavl 103 (294)
T 3b4u_A 41 VTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVT-----------------GVLVDSIEDAADQSAEALNAGARNIL 103 (294)
T ss_dssp EEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEE-----------------EECCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCccHHHHHHHHHHHHhcCCCEEE
Confidence 444542 23568999999999999987777754331 23345778888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 104 v~~P 107 (294)
T 3b4u_A 104 LAPP 107 (294)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9754
No 80
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.30 E-value=1.2e+02 Score=30.87 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=44.9
Q ss_pred cCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecC
Q 005331 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (702)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (702)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.+
T Consensus 55 ~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 55 ATLSVEEHTAVIEAVVKHVAKRVPVIA-----------------GTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 577999999999999887767654331 223467888899999999999999999754
No 81
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=22.20 E-value=69 Score=31.61 Aligned_cols=49 Identities=6% Similarity=-0.042 Sum_probs=30.4
Q ss_pred ccccccCCcEEEEEeCCCC-----CCH-------HHHHHHHHHcCCEE--EEecCCCeeEEEe
Q 005331 652 GETSIFSDMVFYFVNVPPA-----YSL-------DSLHKMVVENGGTF--SMNLNNSVTHCVA 700 (702)
Q Consensus 652 ~~s~~f~g~~f~v~~~~~~-----~~k-------~~l~~~i~~~gG~~--~~n~~~~~~~~i~ 700 (702)
....+|+|..+|++.+... ++| +.+..++..+||++ +.......++.|.
T Consensus 147 ~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~ 209 (241)
T 2vxb_A 147 ARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLIL 209 (241)
T ss_dssp HCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEE
T ss_pred hcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEE
Confidence 3468999999998865321 122 67788899999999 4322223444444
No 82
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.87 E-value=1.2e+02 Score=31.11 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=48.0
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
++.+|. ....++..||+++++.++....+++.++. ...+.+..+..++.+.+.+.|..|++
T Consensus 61 l~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia-----------------Gvg~~st~eai~la~~A~~~Gadavl 123 (314)
T 3qze_A 61 IVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIA-----------------GTGANSTREAVALTEAAKSGGADACL 123 (314)
T ss_dssp EEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCcCHHHHHHHHHHHHHcCCCEEE
Confidence 445542 23567899999999999887777654331 22345788888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 124 v~~P 127 (314)
T 3qze_A 124 LVTP 127 (314)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9753
No 83
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.79 E-value=1.1e+02 Score=31.43 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=47.5
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
++.+|. ....++..||+++++.++....+++.++. ...+.+..+..++.+.+.+.|..|++
T Consensus 62 i~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia-----------------Gvg~~~t~~ai~la~~A~~~Gadavl 124 (315)
T 3na8_A 62 IAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIV-----------------SVSDLTTAKTVRRAQFAESLGAEAVM 124 (315)
T ss_dssp EECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 445552 23567899999999999887766654331 22346788889999999999999999
Q ss_pred Eec
Q 005331 422 LKD 424 (702)
Q Consensus 422 ~K~ 424 (702)
+=.
T Consensus 125 v~~ 127 (315)
T 3na8_A 125 VLP 127 (315)
T ss_dssp ECC
T ss_pred ECC
Confidence 954
No 84
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=21.54 E-value=1.6e+02 Score=30.03 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=47.8
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
++..|. ....++..||+++++.++....+++.++. ..-+.+..+..++-+.+.+.|..|++
T Consensus 52 l~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavl 114 (307)
T 3s5o_A 52 FVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLA-----------------GSGCESTQATVEMTVSMAQVGADAAM 114 (307)
T ss_dssp EEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 455553 23567899999999999887777754331 12345778888999999999999999
Q ss_pred Eec
Q 005331 422 LKD 424 (702)
Q Consensus 422 ~K~ 424 (702)
+=.
T Consensus 115 v~~ 117 (307)
T 3s5o_A 115 VVT 117 (307)
T ss_dssp EEC
T ss_pred EcC
Confidence 964
No 85
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.86 E-value=1.3e+02 Score=30.39 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=47.6
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
+...|. ....++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|++
T Consensus 38 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavl 100 (294)
T 2ehh_A 38 ILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIA-----------------GTGGNATHEAVHLTAHAKEVGADGAL 100 (294)
T ss_dssp EEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE-----------------ECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 444542 23467999999999998877666654331 22345778888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 101 v~~P 104 (294)
T 2ehh_A 101 VVVP 104 (294)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9854
No 86
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.82 E-value=1.4e+02 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=48.2
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
|...|. ....++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|++
T Consensus 54 l~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~st~~ai~la~~A~~~Gadavl 116 (304)
T 3cpr_A 54 LVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIA-----------------GVGTNNTRTSVELAEAAASAGADGLL 116 (304)
T ss_dssp EEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEE-----------------ECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEe-----------------cCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 445552 23568999999999999877666654331 22345778888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 117 v~~P 120 (304)
T 3cpr_A 117 VVTP 120 (304)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9865
No 87
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.21 E-value=1.2e+02 Score=30.78 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=44.5
Q ss_pred cCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecC
Q 005331 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (702)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (702)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3tak_A 49 STLSMEEHTQVIKEIIRVANKRIPIIA-----------------GTGANSTREAIELTKAAKDLGADAALLVTP 105 (291)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEE-----------------eCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 567999999999999887767654331 223457888889999999999999999754
No 88
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.19 E-value=1.4e+02 Score=30.37 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
+...|. ....++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|++
T Consensus 50 l~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia-----------------Gvg~~~t~~ai~la~~A~~~Gadavl 112 (301)
T 1xky_A 50 IVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIA-----------------GTGSNNTHASIDLTKKATEVGVDAVM 112 (301)
T ss_dssp EEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEe-----------------CCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 445542 23467899999999998877666653321 22345778888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 113 v~~P 116 (301)
T 1xky_A 113 LVAP 116 (301)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9865
No 89
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.18 E-value=1.4e+02 Score=30.15 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=47.8
Q ss_pred eeeCCc--cccCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEE
Q 005331 344 LYVGDT--SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 421 (702)
Q Consensus 344 L~lng~--~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV 421 (702)
+...|. ....++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|++
T Consensus 39 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~-----------------Gvg~~~t~~ai~la~~a~~~Gadavl 101 (291)
T 3a5f_A 39 IIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIA-----------------GTGSNNTAASIAMSKWAESIGVDGLL 101 (291)
T ss_dssp EEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCcccHHHHHHHHHHHHhcCCCEEE
Confidence 445553 23568999999999998876666653321 22345778888999999999999999
Q ss_pred EecC
Q 005331 422 LKDL 425 (702)
Q Consensus 422 ~K~~ 425 (702)
+=.+
T Consensus 102 v~~P 105 (291)
T 3a5f_A 102 VITP 105 (291)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9854
No 90
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.05 E-value=1.3e+02 Score=31.03 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=44.9
Q ss_pred cCCCHHHHHHHHHhhccCCCCcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecC
Q 005331 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (702)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (702)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.+
T Consensus 70 ~~Ls~~Er~~v~~~~v~~~~grvpVia-----------------Gvg~~st~~ai~la~~A~~~Gadavlv~~P 126 (315)
T 3si9_A 70 PTLTHEEHKRIIELCVEQVAKRVPVVA-----------------GAGSNSTSEAVELAKHAEKAGADAVLVVTP 126 (315)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 567899999999999887666654331 223467888899999999999999999754
Done!