Query 005333
Match_columns 701
No_of_seqs 171 out of 718
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1E-190 3E-195 1605.4 72.3 630 6-683 11-640 (647)
2 PRK14696 tynA tyramine oxidase 100.0 7E-184 1E-188 1562.6 71.3 622 5-679 84-721 (721)
3 COG3733 TynA Cu2+-containing a 100.0 2E-184 3E-189 1477.4 58.6 623 8-678 29-653 (654)
4 PLN02566 amine oxidase (copper 100.0 8E-178 2E-182 1500.2 69.7 607 8-673 21-646 (646)
5 KOG1186 Copper amine oxidase [ 100.0 5E-153 1E-157 1267.7 55.5 629 3-680 22-658 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 1E-143 2E-148 1178.9 36.0 410 262-679 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 5.8E-23 1.3E-27 185.6 10.7 100 134-238 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.7 3.2E-17 6.9E-22 144.2 3.8 85 9-128 1-85 (86)
9 PF09248 DUF1965: Domain of un 34.5 40 0.00086 29.5 2.9 25 205-230 2-31 (74)
10 PRK11055 galM galactose-1-epim 24.5 6.7E+02 0.014 27.8 11.1 125 295-447 27-158 (342)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.2e-190 Score=1605.44 Aligned_cols=630 Identities=53% Similarity=0.933 Sum_probs=594.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCC
Q 005333 6 QTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPP 85 (701)
Q Consensus 6 ~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~ 85 (701)
.+.|||||||++||++|++|||++... ++.++|++|+|+||+|++|+. | ..+. .++
T Consensus 11 ~~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~------------~~g~------~~~ 66 (647)
T PRK11504 11 AVSHPLDPLTAAEIEAAVAILRAEGLL---GESTRFVSIELAEPPKAEVLA---F------------DPGD------PID 66 (647)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEeeccCCCHHHHHh---h------------hcCC------CCC
Confidence 347999999999999999999998642 357999999999999999983 2 1222 237
Q ss_pred ceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCC
Q 005333 86 RRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIED 165 (701)
Q Consensus 86 R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~ 165 (701)
|+|+|++++..++.++|++|+|+ +++|++|+.++++||+++.+|+.+|+++|++||+|+++|++|||++
T Consensus 67 R~a~v~~~~~~~~~~~e~vVdL~-----------~~~V~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~ 135 (647)
T PRK11504 67 RRAFVVLYDRATGKTYEAVVSLT-----------AGEVVSWEEIPGVQPPILLEEFEECEEVVRADPRWQAALAKRGITD 135 (647)
T ss_pred cEEEEEEEECCCCcEEEEEEECC-----------CCEEEEEEECCCccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCC
Confidence 99999999988899999999997 6899999999999999999999999999999999999999999998
Q ss_pred CCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCCCCC
Q 005333 166 MDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRN 245 (701)
Q Consensus 166 ~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~~~~ 245 (701)
+++|+||||++|+++..++.++||+|++||+|. ++.+|+|+||||||.++||++++||++|++.+..|+|+.. .+
T Consensus 136 ~~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~---~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~--~~ 210 (647)
T PRK11504 136 FDLVMVDPWSAGYFGEPEERGRRLARGLAFVRA---DPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED--GN 210 (647)
T ss_pred cceEEEcCccccccCCCCcCCceEEEEEEEEec---CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--CC
Confidence 889999999999988765557999999999996 3578999999999999999999999999998777777654 68
Q ss_pred CCCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEe
Q 005333 246 YTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVV 325 (701)
Q Consensus 246 y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~v 325 (701)
|.+..+. + .|+++||++|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|++ ||||||+|||||+|
T Consensus 211 Y~~~~~~-~-~r~dlkPl~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d~g~~-R~v~YrlslsEm~V 287 (647)
T PRK11504 211 YDPEFIP-P-LRTDLKPLEITQPEGPSFTVDGNEVEWQKWSFRVGFNPREGLVLHQVSYDDGGRE-RPILYRASLSEMVV 287 (647)
T ss_pred CChhHcc-c-cccCCCCcceeCCCCCcEEEcCCEEEECCcEEEEecCCCCceEEEEEEEcCCCCc-ceEEEEeeeeeeee
Confidence 9987654 4 4999999999999999999999999999999999999999999999999998764 89999999999999
Q ss_pred ecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccCCCc
Q 005333 326 PYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGL 405 (701)
Q Consensus 326 pY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~~g~ 405 (701)
|||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|.|++|||+||+++.
T Consensus 288 PYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D~GilwkHt~~r~~~ 367 (647)
T PRK11504 288 PYGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEEDYGILWKHTDFRTGS 367 (647)
T ss_pred ecCCCCcchhhceeeeccccCCcccccccccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeecCCeeeeeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEee
Q 005333 406 AEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDM 485 (701)
Q Consensus 406 ~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~ 485 (701)
++++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++.+++..+||++|+|+++|++|||+|||||||
T Consensus 368 ~~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~ 447 (647)
T PRK11504 368 AEVRRSRRLVISFFATVGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDM 447 (647)
T ss_pred EEEEeccEEEEEEEEecccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999997677789999999999999999999999999
Q ss_pred eccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecC
Q 005333 486 AVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPG 565 (701)
Q Consensus 486 dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~ 565 (701)
|||| .+|||++.++++.+.++.||++++|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|+
T Consensus 448 dIDG----~~Nsv~~~d~~~~p~~~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~ 523 (647)
T PRK11504 448 DVDG----PGNSVYEVNSVPVPMGPDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPG 523 (647)
T ss_pred cccC----CCceEEEEEeEecCCCCCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccC
Confidence 9998 689999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEeeccccCCCC
Q 005333 566 SNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRL 645 (701)
Q Consensus 566 ~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ 645 (701)
+++.+|+.++|+..+||+||+||||||+|+|+|+||||+|+||+.+ .+||++|+++||+|+|||||||||||+||+||+
T Consensus 524 ~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~~Qs~~-~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ 602 (647)
T PRK11504 524 GNPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYAAGDYPNQSAG-GDGLPAYIAADRSIENTDVVLWYTFGITHVPRP 602 (647)
T ss_pred CCccccCCCCchhhhcchhhhCcEEEeccCCCccccCCCCcccCCC-CCCHHHHhcCCCccccCceEEEEecCcccCCCh
Confidence 9999999999999999999999999999999999999999999975 479999999999999999999999999999999
Q ss_pred CCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCCCccc
Q 005333 646 EDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESDLDL 683 (701)
Q Consensus 646 ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~~~~~ 683 (701)
|||||||++++||+|||+|||++||+||+|++.+..+.
T Consensus 603 ED~PvMP~~~~gf~L~P~nFF~~NPaldvp~s~~~~~~ 640 (647)
T PRK11504 603 EDWPVMPVDYAGFKLKPVGFFDRNPALDLPPEPPAACH 640 (647)
T ss_pred hhCCCCccceEEEEEEcCCCCCCCccccCCCccccccc
Confidence 99999999999999999999999999999999875543
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=6.5e-184 Score=1562.64 Aligned_cols=622 Identities=29% Similarity=0.549 Sum_probs=571.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCC
Q 005333 5 AQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLP 84 (701)
Q Consensus 5 ~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p 84 (701)
+.+.|||||||++||++|++|||++... +..++|++|+|+||+|++|+. | +. .+.. .+|
T Consensus 84 ~~~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------~~--~~~~----~~~ 142 (721)
T PRK14696 84 EKRPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLKEPDKEAVWA---F---------AL--ENKP----VDQ 142 (721)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEEEecCCCcHHHHH---H---------Hh--cCCC----CCC
Confidence 4457999999999999999999998641 246999999999999999983 2 11 1211 246
Q ss_pred CceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCC
Q 005333 85 PRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIE 164 (701)
Q Consensus 85 ~R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~ 164 (701)
+|+|+|+++. +..++|++|||+ +++|++|+.++++||+++.+|+.+|+++|++||+|+++|++|||+
T Consensus 143 ~R~A~v~~~~--~~~~~e~vVdL~-----------~~~v~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~ 209 (721)
T PRK14696 143 PRKADVIMLD--GKHVIEAVVDLQ-----------NNKVLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAALKKRGIT 209 (721)
T ss_pred CcEEEEEEEe--CCCEEEEEEECC-----------CCEEEEEEeCCCccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCC
Confidence 8999999984 456999999997 689999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecccccccCCCCC--CCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCC
Q 005333 165 DMDLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADP 242 (701)
Q Consensus 165 ~~~~v~~dpw~~G~~~~~~~--~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~ 242 (701)
++++|+||||++|+++..++ +++|++|++||+|. +++|+||||||||+++||++++||++|++.+..+.|...
T Consensus 210 ~~~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~~----~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~- 284 (721)
T PRK14696 210 DVKKVITTPLTVGYFDGKDGLKQDARLLKVVSYLDV----GDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA- 284 (721)
T ss_pred CCCEEEEeCccccccCCcCccccCceEEEEEEEEcC----CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-
Confidence 88899999999999876643 37999999999973 478999999999999999999999999988664444432
Q ss_pred CCCCCCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeee
Q 005333 243 LRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVE 322 (701)
Q Consensus 243 ~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~E 322 (701)
.+|.+... .|+++||++|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|++ ||||||+||||
T Consensus 285 -~~Y~~~~~----~r~~lKPl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d~g~~-R~v~YrlSlsE 358 (721)
T PRK14696 285 -RPYDGRDR----VAPAVKPLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYNDNGTK-RKVMYEGSLGG 358 (721)
T ss_pred -cCCCcccc----ccCCCCCceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcCCCcc-eeEEEEeeeee
Confidence 58987652 4999999999999999999999999999999999999999999999999998774 99999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccC
Q 005333 323 MVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWR 402 (701)
Q Consensus 323 m~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~ 402 (701)
|+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++|||++++
T Consensus 359 m~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D~G~~wkHt~~~ 438 (721)
T PRK14696 359 MIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMG 438 (721)
T ss_pred EEEeCCCCCchhhhceeeeccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeecCCCceeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCC--------CCcCCccceecCCCcccc
Q 005333 403 TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--------GEVRKYGTIIAPGLYAPV 474 (701)
Q Consensus 403 ~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~--------~~~~~yGt~V~~~~~g~~ 474 (701)
++ ++++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++.. ++..+|||+|+|+++|++
T Consensus 439 ~~-~~~~r~r~LVvr~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~ 517 (721)
T PRK14696 439 QP-NVSTERRELVVRWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTT 517 (721)
T ss_pred CC-cceEeeeEEEEEEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCccccc
Confidence 54 789999999999999999999999999999999999999999999987432 334689999999999999
Q ss_pred ceeeEEEEEeeeccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCC
Q 005333 475 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT 554 (701)
Q Consensus 475 HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~ 554 (701)
|||+||||||||||| .+|||++.++++.+.+..||++++|+++++++++|++|++++++.+.|+ |+|++++|++
T Consensus 518 HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~p~~~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~ 591 (721)
T PRK14696 518 HQHIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRM 591 (721)
T ss_pred ceEEEEEEEcccccC----CcceEEEEeeeEccCCCCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCC
Confidence 999999999999998 6999999999988888899999999999999999999999999999996 8999999999
Q ss_pred CCceeEEEecCC--CCC----CCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceee
Q 005333 555 GQLTGYKLVPGS--NCL----PLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEE 628 (701)
Q Consensus 555 G~p~gYrl~p~~--~~~----~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~ 628 (701)
|+|+||||+|+. +++ +++.|+|+..+||+||+||||||||+|+|+||+|+|+||+++ ++||++|+++||+|+|
T Consensus 592 G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g-~~gl~~w~~~~e~i~n 670 (721)
T PRK14696 592 GNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDN 670 (721)
T ss_pred CCeeeEEEecCCCCccccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccC
Confidence 999999999974 322 268999999999999999999999999999999999999986 5799999999999999
Q ss_pred CCeEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCC
Q 005333 629 TDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 679 (701)
Q Consensus 629 eDiV~W~t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~ 679 (701)
+|||+|||||+||+||+|||||||++++||+|||+||||+||+||+|+..|
T Consensus 671 ~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd~nPaldvp~~~~ 721 (721)
T PRK14696 671 TDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGLLKKDQ 721 (721)
T ss_pred CceEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999998743
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-184 Score=1477.35 Aligned_cols=623 Identities=47% Similarity=0.815 Sum_probs=591.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005333 8 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 87 (701)
Q Consensus 8 ~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~ 87 (701)
+|||||||++||++|++|||+++.. .+.++|..|+|.||+|++|+. | ...+. ++.|.
T Consensus 29 shPLdpLt~~Eik~aVEivr~e~~~---~~~~~F~~VtL~eP~K~~v~~---f-----------~~~~~------~ieR~ 85 (654)
T COG3733 29 SHPLDPLTADEIKQAVEIVRAEADF---KKNFAFTEVTLLEPDKQEVLA---F-----------RLENK------PIERK 85 (654)
T ss_pred CCCCCccCHHHHHHHHHHHHhhccc---CCceeeEEEEecCCchHHHHH---H-----------HhcCC------Ccchh
Confidence 5999999999999999999998765 468999999999999999984 1 01132 56899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCCC
Q 005333 88 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMD 167 (701)
Q Consensus 88 A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~~~ 167 (701)
|++++|..+...++|++|+|+ +.+|.+|+++++++|+|+.+||.+++.++++||+|+|||+||||+|++
T Consensus 86 a~~~~~~~~~~~i~EavV~L~-----------~nkv~~~q~i~~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~ 154 (654)
T COG3733 86 ALAVVYELDGKGIYEAVVDLD-----------NNKVLSWQPIKDAHPMITLDEFASVENIVRNDPRFIEACKKRGITDMD 154 (654)
T ss_pred hhhheeeccCCceEEEEEEcc-----------cceeeeeEeccccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhh
Confidence 999999998899999999998 689999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCCCCCCC
Q 005333 168 LVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNYT 247 (701)
Q Consensus 168 ~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~~~~y~ 247 (701)
+|+||||+.||++.+...++|+++.++|+|.. .++|+|+|||+||+++||+++++|++|++++++|+|... .+|.
T Consensus 155 ~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~---e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~--~ny~ 229 (654)
T COG3733 155 QVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV---EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR--ANYG 229 (654)
T ss_pred ceEeccccccccCccccccceeEEEEEEEEec---CCCCcccccccceeeEEEcccCeEEEecCCCcccccccc--cCcC
Confidence 99999999999987667899999999999974 468999999999999999999999999999999998854 5787
Q ss_pred CCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeec
Q 005333 248 AGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPY 327 (701)
Q Consensus 248 ~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY 327 (701)
.+.+. + .+.++||++|.||+|+||+|+|++|+||+|+||+|||+||||+||||+|+|+|+ +|+|+||+||.||+|||
T Consensus 230 ~e~i~-~-~~~~~KpiqI~QPeg~sf~i~G~~i~W~~w~frig~n~ReGlvl~dVsY~D~g~-~Rpv~YraSl~eMvVPY 306 (654)
T COG3733 230 RERIG-K-ALGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIGMNPREGLVLSDVSYNDNGN-KRPVLYRASLVEMVVPY 306 (654)
T ss_pred HHHhh-h-hcCCCCCceeecCCCceEEEecCEEEEeeeeEEEeccccCCeEEEEEEEcCCCc-cceEEEEeeecceeeec
Confidence 65543 2 367799999999999999999999999999999999999999999999999886 79999999999999999
Q ss_pred CCCCCccccceeeecCCCCCccCCCCCCCCCCCCC-CeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccCCCce
Q 005333 328 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG-YIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLA 406 (701)
Q Consensus 328 ~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg-~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~~g~~ 406 (701)
|||+++|++|++||+||||+|.++++|++| ||.| .|+|||+++++.+|+|+++||||||||+|+|+||||+|||++..
T Consensus 307 GdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed~GvlwKH~d~rs~~~ 385 (654)
T COG3733 307 GDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEEDAGVLWKHQDFRSPNV 385 (654)
T ss_pred CCCCcchhhhhcccccccCccccccchhhc-ccccceeEEEeeeeeccCCceEEecceeEEEeccccceeeehhhcCCcc
Confidence 999999999999999999999999999999 9999 99999999999999999999999999999999999999999999
Q ss_pred eeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCC-ccceecCCCccccceeeEEEEEee
Q 005333 407 EVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRK-YGTIIAPGLYAPVHQHFFVARMDM 485 (701)
Q Consensus 407 ~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~-yGt~V~~~~~g~~HqH~f~~RlD~ 485 (701)
+++|.|.||||+|+||+||||+|+|+|||||+||++++||||+++.+..+++..+ ||++|.|++.|++||||||+||||
T Consensus 386 ~trr~r~LVVs~i~Tv~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm 465 (654)
T COG3733 386 ETRRARGLVVSWIATVANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLDM 465 (654)
T ss_pred ceeeccceEEEEEEeecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeecc
Confidence 9999999999999999999999999999999999999999999999888877655 999999999999999999999999
Q ss_pred eccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecC
Q 005333 486 AVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPG 565 (701)
Q Consensus 486 dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~ 565 (701)
|||| ..|||+++++...+.+++||+||+|.++++++++|++|.+++|+.+.|+|+|+|++|+|..|+|++|||+|+
T Consensus 466 ~VDG----~~Nsv~e~nv~~~P~~~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~ 541 (654)
T COG3733 466 DVDG----ERNSVVEMNVVGAPITKGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPG 541 (654)
T ss_pred cccC----cccceEEEEcccCCCCCCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecC
Confidence 9998 699999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEeeccccCCCC
Q 005333 566 SNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRL 645 (701)
Q Consensus 566 ~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ 645 (701)
.+..+++.++|++.+|++||+||||||+|++.|+||+|+|+||+.+ ++||++|+++||||+|||||+|||||+||+||+
T Consensus 542 ~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ErYp~GdYpnq~~~-~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rp 620 (654)
T COG3733 542 HNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGERYPAGDYPNQSAG-GKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRP 620 (654)
T ss_pred CCCCCcCCCCcchhhhhhhccceEEEeccCcccccCCCCCCCCCCC-CCChhhhhhccccccCcceEEEEecCceeccCc
Confidence 9999999999999999999999999999999999999999999975 479999999999999999999999999999999
Q ss_pred CCCCCcccceeeEEEEeCCCCCCCCCCCCCCCC
Q 005333 646 EDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 678 (701)
Q Consensus 646 ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~ 678 (701)
||||+||++++||+|+|+||||+||++++|.+.
T Consensus 621 ED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~~ 653 (654)
T COG3733 621 EDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRKD 653 (654)
T ss_pred ccCCccccchhceEeccccccccCcccCCCccC
Confidence 999999999999999999999999999999764
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=8.5e-178 Score=1500.21 Aligned_cols=607 Identities=30% Similarity=0.547 Sum_probs=550.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005333 8 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 87 (701)
Q Consensus 8 ~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~ 87 (701)
.|||||||++||++|++|||++.... ...++|++|+|+||+|++|+. | +..++.+. +.|+|+
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------~~~~~~~~----~~p~R~ 82 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGN--LPNLTFHFLDLEEPEKRDVLK---W---------LSSNPSNK----SPPPRR 82 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCC--CCceEEEEEEccCCChHHHHh---h---------hhcccCCC----CCCCcE
Confidence 69999999999999999999986421 135999999999999999984 2 22333332 246899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCC-CCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005333 88 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDV-QPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 166 (701)
Q Consensus 88 A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~-~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~~ 166 (701)
|+|++ ..+..++|++|+|+ +++|++|+.+++. ||+++.+|+.+|+++|++||+|+|+|++|||+.
T Consensus 83 a~v~~--~~~~~~~e~vVdl~-----------~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~- 148 (646)
T PLN02566 83 AKVVV--RAGGETYELIVDLA-----------TGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNI- 148 (646)
T ss_pred EEEEE--ecCCCEEEEEEECC-----------CCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCc-
Confidence 99665 44456999999997 6899999999988 999999999999999999999999999999965
Q ss_pred CeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCCCCCC
Q 005333 167 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 246 (701)
Q Consensus 167 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~~~~y 246 (701)
++|+||||++|+++. + +++|++|++||+|. +++|+|+||||||.++||++++||++|++....|+|+... +
T Consensus 149 ~~V~~dpw~~G~~~~-~-~~~R~~q~~~y~r~----~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~--~- 219 (646)
T PLN02566 149 SEVSCIPFTVGWYGE-T-VTKRALKISCFYRG----GSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEG--T- 219 (646)
T ss_pred ceEEEeCcccccCCC-C-CCcEEEEEEEEEcC----CCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCC--C-
Confidence 789999999999876 3 47999999999993 4789999999999999999999999998875556654331 1
Q ss_pred CCCccCCCCCCCCCCCCeecCCC-CCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCC-ceeEEEEeeeeeEE
Q 005333 247 TAGETRGGVDRSDIKPLQIVQPE-GPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRG-RRPVAHRLSFVEMV 324 (701)
Q Consensus 247 ~~~~~~~~~~r~~lkp~~i~QPe-G~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g-~R~I~Yrlsl~Em~ 324 (701)
+ .|+++||+.|+||| |+||+|+|++|+||||+||||||+|||||||||+|+|.+.+ +||||||+|||||+
T Consensus 220 -------~-~R~d~kPl~i~QPegG~sF~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~ 291 (646)
T PLN02566 220 -------D-FRTKHKPFSFPCNVSDSGFTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETF 291 (646)
T ss_pred -------C-CCcCCCCccccCCCCCCcEEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeE
Confidence 1 38999999999999 59999999999999999999999999999999999985422 48999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecC-CccccccccC-
Q 005333 325 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDH-GILWKHQDWR- 402 (701)
Q Consensus 325 vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~-G~l~rH~d~~- 402 (701)
||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+ |++|||++++
T Consensus 292 VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~ 371 (646)
T PLN02566 292 VPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINV 371 (646)
T ss_pred EecCCCCccccccceeeccccCccccccccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5999999985
Q ss_pred ------CCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCC--CCc---CCccceecCCCc
Q 005333 403 ------TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--GEV---RKYGTIIAPGLY 471 (701)
Q Consensus 403 ------~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~--~~~---~~yGt~V~~~~~ 471 (701)
+|.++ .+||||+|+|||||||||+|+|||||+||+||+|||||+|.+... ++. .+||++|+|+++
T Consensus 372 ~~~~~r~g~~~----~~LVvr~I~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~ 447 (646)
T PLN02566 372 PGRVIRSGEPE----ISLVVRMVATLGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTI 447 (646)
T ss_pred CccccccCcce----EEEEEEEEEEeecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcc
Confidence 34333 399999999999999999999999999999999999999877642 322 589999999999
Q ss_pred cccceeeEEEEEeeeccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecC
Q 005333 472 APVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNT 548 (701)
Q Consensus 472 g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~ 548 (701)
|++|||+||||||||||| .+|||++.++++.+. ++.||++++|+++++.+++|++|++++++++ |.|+|+|+
T Consensus 448 a~~HqH~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~-~~~~i~N~ 522 (646)
T PLN02566 448 AVNHDHFLTYYLDLDVDG----NGNSFVKAKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEP-AELLIVNP 522 (646)
T ss_pred cccceEEEEEEEcccccC----CCCeEEEEeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCC-ceEEEECC
Confidence 999999999999999997 699999999988543 3689999999999999999999999999986 66999999
Q ss_pred CCcCCCCCceeEEEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceee
Q 005333 549 RTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEE 628 (701)
Q Consensus 549 ~~~N~~G~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~ 628 (701)
+++|++|+|+||||+|++++.+|+.++|+..+||+||+||||||||+|+|+||||+|++|+++ +.||++|+++||+|+|
T Consensus 523 ~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g-~~gl~~w~~~~~~I~~ 601 (646)
T PLN02566 523 NKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRG-DDGLAVWSSRNREIEN 601 (646)
T ss_pred CCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCCcccCCCCcCccCCCC-CCChhhhhcCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999986 5699999999999999
Q ss_pred CCeEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCC
Q 005333 629 TDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVD 673 (701)
Q Consensus 629 eDiV~W~t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld 673 (701)
||||+|||||+||+||+|||||||++++||+|||+|||++||+|.
T Consensus 602 ~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 602 KDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred CceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999983
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-153 Score=1267.72 Aligned_cols=629 Identities=36% Similarity=0.591 Sum_probs=562.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCC
Q 005333 3 VRAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTK 82 (701)
Q Consensus 3 ~~~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 82 (701)
..+.+.|||||||+.||.+++.||+....+. ......|++|.|.||.|+.++. +.. ++ ..+
T Consensus 22 s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s-~~~~~~~~av~l~eP~K~~vls---------------w~~-gP--~~~ 82 (670)
T KOG1186|consen 22 SQERPSHPLDPLTELELPKVAAILAHLDPGS-PHPAFEAVAVVLFEPQKQPVLS---------------WLS-GP--LPH 82 (670)
T ss_pred cCCCCCCCcCccchhhhhHHHHHHhhcccCC-CCCceEEEEEEecCCCcCccce---------------ecc-CC--CCC
Confidence 3456789999999999999999999877543 2456889999999999999872 123 22 125
Q ss_pred CCCceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeec-CC-CCCCCCHHHHHHHHHHHhcChhHHHHHHH
Q 005333 83 LPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVV-PD-VQPPMDAVEYAECEAVVKDFPPFREAMKK 160 (701)
Q Consensus 83 ~p~R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~-~~-~~~p~~~~E~~~~~~~~~~~p~~~~a~~~ 160 (701)
+|+|||+||.. ..+.++|++|||+ +++|++.+.. .+ +.|.++.+|+.+..+++.+.+.|...+.+
T Consensus 83 pPpRRA~vVaR--~gg~t~e~~vdls-----------t~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~ 149 (670)
T KOG1186|consen 83 PPPRRALVVER--HGGPTPEARVDLS-----------TAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLR 149 (670)
T ss_pred CCcceeEEEee--cCCCceEEEEecc-----------hheeeecccccccCccccccHHHHHhhhcCCccccccchhhhc
Confidence 78999999854 4477899999997 6788887665 55 68999999999999999999999999999
Q ss_pred cCCCCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCC
Q 005333 161 RGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPA 240 (701)
Q Consensus 161 ~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~ 240 (701)
||+... .|+|.+|..||+++.+...+|+++..||+|.+ ..|+|++||+|++++||++++||+++.+...+|+|..
T Consensus 150 rG~~~s-~vic~~~t~Gwyge~~~g~~Rlik~~~f~~~~----~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~ 224 (670)
T KOG1186|consen 150 RGDRMS-WVVCYPNTSGWYGEHPVGLERLIKHMAFYRAG----WVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKA 224 (670)
T ss_pred cCCcce-eEEEecceeeecccCCcchhhhhhhcccccCC----CeeEEEeecCceEEeeccccceEEEEecccccccCCC
Confidence 998765 47778999998887765568999999999974 4799999999999999999999999999888888876
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeee
Q 005333 241 DPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSF 320 (701)
Q Consensus 241 ~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl 320 (701)
.. .+|...... .-+|++..+|+||||+|+|+.|+|++|+|||||+.|+||+|+||+|.|.+. -|+|+||+|+
T Consensus 225 ~G-t~~Rs~~~p------~~~pLq~isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~~-~r~v~Y~~s~ 296 (670)
T KOG1186|consen 225 KG-TELRSSVLP------GFKPLQPISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFDEDV-YRRVLYKGSL 296 (670)
T ss_pred CC-CccccccCC------CCccccccCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcCCCc-eeeEEEEeee
Confidence 53 455432211 334477777999999999999999999999999999999999999999876 6999999999
Q ss_pred eeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCC-cccccc
Q 005333 321 VEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHG-ILWKHQ 399 (701)
Q Consensus 321 ~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G-~l~rH~ 399 (701)
|||+||||||+++|++|+|||.||||+|..|++|++|||||++|+|||++++..+|+|.+++|||||||+++| ++|||+
T Consensus 297 ~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~ 376 (670)
T KOG1186|consen 297 SEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHT 376 (670)
T ss_pred eeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred cc-CCC--ceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCc-CCccceecCCCccccc
Q 005333 400 DW-RTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEV-RKYGTIIAPGLYAPVH 475 (701)
Q Consensus 400 d~-~~g--~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~-~~yGt~V~~~~~g~~H 475 (701)
|+ ..| ..+++++++|||||++|||||||||||+||+||.||++|+|||||+++++..++. ..|||+|+++++|++|
T Consensus 377 ~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v~~~~ig~~H 456 (670)
T KOG1186|consen 377 EAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIVAENTIGVNH 456 (670)
T ss_pred ccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEEEeeEEEEEeeccccccccccccceeccccccccc
Confidence 94 445 6899999999999999999999999999999999999999999999999876665 6899999999999999
Q ss_pred eeeEEEEEeeeccCCCCCCccEEEEEeeeecC-CCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCC
Q 005333 476 QHFFVARMDMAVDCKPGEAHNQVVEMNVKVEE-PGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT 554 (701)
Q Consensus 476 qH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~-~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~ 554 (701)
||+|+|||||||||. .+|++++..++... .+..+++.+.+.++++++++|++|+.+++..+++.|.|+|++++|+|
T Consensus 457 ~H~~~~rldldvdG~---~n~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~ 533 (670)
T KOG1186|consen 457 DHFVTFRLDLDVDGT---KNNSFVRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKH 533 (670)
T ss_pred ceEEEEEEcccccCC---ccceeeeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCcccc
Confidence 999999999999984 36666665554322 22247778888999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEE
Q 005333 555 GQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 634 (701)
Q Consensus 555 G~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W 634 (701)
|+|+||||+|++++.+|+.++|+.++||+|++||||||+|+++|.||||.|.+|+++ +++|+.|.+.|++|||+|||+|
T Consensus 534 G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~-~~tl~~w~~~nr~ien~DiV~W 612 (670)
T KOG1186|consen 534 GNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEVWASGLYADQSQG-DDTLAVWSQRNRSIENKDIVMW 612 (670)
T ss_pred CCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCccccCcccccccCCCC-CCcceehhhcccccccCceEEE
Confidence 999999999999999999999999999999999999999999999999999999964 5799999999999999999999
Q ss_pred EeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCCC
Q 005333 635 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESD 680 (701)
Q Consensus 635 ~t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~~ 680 (701)
||+||||||++||||+||+...||.|||+|||++||+|++|++...
T Consensus 613 ~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~l~~~p~~~~ 658 (670)
T KOG1186|consen 613 YTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPSLKSPPSKYV 658 (670)
T ss_pred EEcceeecCchhcCCCCcccCCceeeccccccccCccccCCCccee
Confidence 9999999999999999999999999999999999999999998654
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=1.1e-143 Score=1178.90 Aligned_cols=410 Identities=53% Similarity=0.950 Sum_probs=374.4
Q ss_pred CCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeee
Q 005333 262 PLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFD 341 (701)
Q Consensus 262 p~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD 341 (701)
||+|+||||+||+|+|++|+||+|+||++|++||||+||||+|+|++ |+|+||+|||||+||||||+++|++|+|||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~~---~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D 77 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGER---RPILYRLSLQEMVVPYGDPDPPHHRKNAFD 77 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTEE---EEEEEEEEEEEEEEEEE-SSTTHHH-EEEH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCCC---ccEEEEEeeeeeeeecCCCCchhhcccccc
Confidence 78999999999999999999999999999999999999999998521 259999999999999999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccCCCceeeeeccEEEEEEeee
Q 005333 342 AGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT 421 (701)
Q Consensus 342 ~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~~g~~~v~r~r~LVvr~i~T 421 (701)
+||||||.++++|++|||||++|+|||+++++++|+|++++|||||||+|.|++|||++++++..+++|+|+||||+|+|
T Consensus 78 ~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G~l~kH~~~~~~~~~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 78 SGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAGPLWKHTDYRTGRFEVRRSRRLVVRTIST 157 (413)
T ss_dssp HHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEEEEEEEEETTSSEEEEEEEEEEEEEEEEE
T ss_pred ccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCCchhhcccccccccceeeccEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEeeeccCCCCCCccEEEEE
Q 005333 422 VANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 501 (701)
Q Consensus 422 VgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~ 501 (701)
||||||||||+|||||+||++|+|||||+++++.+++..+||++|+++++|++|||+||||||||||| ++|||+++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG----~~Nsv~~~ 233 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG----TNNSVVEV 233 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS----SEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCC----CCCeEEEE
Confidence 99999999999999999999999999999999988878899999999999999999999999999998 69999999
Q ss_pred eeeecCC---CCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecCCCCCCCCCCchhh
Q 005333 502 NVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKV 578 (701)
Q Consensus 502 ~~~~~~~---~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~l~~~~s~~ 578 (701)
++++++. +..||++++|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++++.+|+.|+|+.
T Consensus 234 d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~ 313 (413)
T PF01179_consen 234 DIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWV 313 (413)
T ss_dssp EEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCH
T ss_pred EeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchh
Confidence 9998765 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEeeccccCCCCCCCCCcccceeeE
Q 005333 579 LRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGF 658 (701)
Q Consensus 579 ~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pvmp~~~~~f 658 (701)
.+||+||+||||||||+|+|+||+|+|++|+++. +||++|+++||+|+|||||||+|+|+||+||+|||||||++++||
T Consensus 314 ~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~-~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~gf 392 (413)
T PF01179_consen 314 ARRASFARHHLWVTKYKDSERYASGEYNNQSPGD-VGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPVEWLGF 392 (413)
T ss_dssp HHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSS-SSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEEEEEEE
T ss_pred hhccccccCceEEeecCCCccCCCCCCccCCCCC-CCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCCcEEEE
Confidence 9999999999999999999999999999999864 899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCC
Q 005333 659 MLMPHGFFNCSPAVDVPPNES 679 (701)
Q Consensus 659 ~L~P~nFFd~nP~ld~p~s~~ 679 (701)
+|||+|||++||+||+|++.|
T Consensus 393 ~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 393 MLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEESSSSSSTTTTCTTC--
T ss_pred EEEcCCCCCCCccccCCCCCC
Confidence 999999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=5.8e-23 Score=185.59 Aligned_cols=100 Identities=46% Similarity=0.733 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCC
Q 005333 134 PPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVE 213 (701)
Q Consensus 134 ~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~ 213 (701)
|||+.+|+.+++++++++|+|+++|++||+++.+.|+||||++|+++..+ +++|++|++||+|.. ..|+|+|||+
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~g~Rl~~~~~~~r~~----~~n~YahPi~ 75 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-EGRRLTWVLCFMRDS----GNNFYAHPIE 75 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-TTS-EEEEEEEE-SS----TS-GGGSEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-CCceEEEEEEEEEcC----CCcccccccC
Confidence 78999999999999999999999999999999889999999999988765 689999999999974 2399999999
Q ss_pred CeEEEEeccccEEEEEecCc-eecCC
Q 005333 214 GIHVLVDMQNMVVIEFEDRK-LVHLP 238 (701)
Q Consensus 214 gl~~~vD~~~~~v~~~~~~~-~~~~p 238 (701)
||+++||+++++|++|++.+ .+|.|
T Consensus 76 gl~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 76 GLEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp CEEEEEETTTTEEEEEEEEEEEETT-
T ss_pred ceEEEEECCCCEEEEEEeCCceeeCC
Confidence 99999999999999999988 67764
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.66 E-value=3.2e-17 Score=144.23 Aligned_cols=85 Identities=46% Similarity=0.656 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCceE
Q 005333 9 HPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRRA 88 (701)
Q Consensus 9 HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~A 88 (701)
|||||||++||++|+++|+++... .+++++|.+|+|.||+|.+|+.+ ++|+. .|+|+|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~--~~~~~~F~~I~L~EP~K~~vl~~---------------~~~~~-----~p~R~A 58 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL--AGEKNRFRSIELQEPPKAEVLAF---------------ERGGP-----PPPRRA 58 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT--TTTSEEEEEEEEE---HHHHHHH---------------HCCTT-----TS-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc--CCCCeEEEEEEeCCCCHHHHhcc---------------ccCCc-----CCCeEE
Confidence 999999999999999999998722 24689999999999999999841 45543 479999
Q ss_pred EEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeee
Q 005333 89 RLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 128 (701)
Q Consensus 89 ~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~ 128 (701)
+|+++++.+. +|++|+|+ +|+|++|+.
T Consensus 59 ~vv~~~~~~~--~e~vVdl~-----------~~~V~~~~~ 85 (86)
T PF02727_consen 59 RVVVYDGGQS--YEAVVDLT-----------SGKVVSWKE 85 (86)
T ss_dssp EEEEEETSSS--SEEEEEEE-----------EEECSCEEE
T ss_pred EEEEEECCee--eeEEEECc-----------CCccccCcc
Confidence 9999998666 89999997 688988875
No 9
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=34.53 E-value=40 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=16.8
Q ss_pred CCccCCCCCCeEEEEecccc-----EEEEEe
Q 005333 205 ENGYARPVEGIHVLVDMQNM-----VVIEFE 230 (701)
Q Consensus 205 ~n~y~~Pi~gl~~~vD~~~~-----~v~~~~ 230 (701)
|...++|+ ||++.+|++++ ||++|.
T Consensus 2 d~~tllPl-gl~~~~DiTGrDpS~Wkv~gw~ 31 (74)
T PF09248_consen 2 DSETLLPL-GLYFKIDITGRDPSKWKVLGWV 31 (74)
T ss_dssp S-GGG-EE-EEEEEEE--SS-GGG-EEEEEE
T ss_pred Cccceece-eeEEEEEeccCChHHcEEEEEE
Confidence 34689999 89999999999 566643
No 10
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=24.46 E-value=6.7e+02 Score=27.75 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=67.8
Q ss_pred cceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeE-eeeeeec
Q 005333 295 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKY-FDAHFTN 373 (701)
Q Consensus 295 eGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~Y-lD~~~~~ 373 (701)
-|-.|..+++.|+. | .+.+++.-|.+.. .+.....| .| -=+|+.||.+.-|.=.....+| |+.
T Consensus 27 ~GA~i~~l~vpd~~-g--------~~~dvvlg~~~~~-~y~~~~~~-~G-a~iGr~anRI~~g~f~~~G~~y~L~~---- 90 (342)
T PRK11055 27 WGATWLSCRVPLSD-G--------SVREVLLGCASPE-DYPDQAAY-LG-ASVGRYANRIANSRFTLDGETYQLSP---- 90 (342)
T ss_pred cCcEEEEEEeECCC-C--------CEeeeEECCCCHH-HHhhCCCc-cC-ceeCCcCCcccCCEEEECCEEEEccc----
Confidence 67778888886632 2 2457777786543 22212222 23 4478888888866433333332 111
Q ss_pred CCCceEEeeceEEeeeecCCccccccccCCCceeeeeccEEEEEEeee------ecccceEEEEEEeccccEEEEEEEEE
Q 005333 374 FAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT------VANYEYAFFWHFYQDGKIEAEVKLTG 447 (701)
Q Consensus 374 ~~g~p~~~~naICifE~d~G~l~rH~d~~~g~~~v~r~r~LVvr~i~T------VgNYDYi~~~~F~~dGtIe~~v~aTG 447 (701)
.+ ..-|||=-..|+-+|..+. .......++++..+. -||++--..|.+..++.++++..|++
T Consensus 91 N~-------~~n~lHGg~~G~~~~~W~v-----~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~ 158 (342)
T PRK11055 91 NQ-------GGNQLHGGPEGFDKRRWQI-----VNQNDRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATV 158 (342)
T ss_pred CC-------CCcccCCCCcccCCcEEEE-----EEccCCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEc
Confidence 01 1236664444432222211 111122455666554 35777788888887788888888874
Done!