Query 005333
Match_columns 701
No_of_seqs 171 out of 718
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 2E-189 5E-194 1604.1 66.7 635 6-686 20-669 (692)
2 3loy_A Copper amine oxidase; T 100.0 5E-186 2E-190 1567.4 69.3 621 8-678 1-633 (633)
3 1w6g_A Phenylethylamine oxidas 100.0 6E-184 2E-188 1557.0 65.9 622 5-680 4-629 (646)
4 1ksi_A Copper amine oxidase; P 100.0 2E-180 8E-185 1530.2 69.4 624 8-679 2-636 (642)
5 1spu_A Copper amine oxidase; o 100.0 4E-176 1E-180 1517.2 65.8 621 5-678 90-726 (727)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 8E-160 3E-164 1372.8 57.8 609 5-677 15-692 (747)
7 1tu5_A Copper amine oxidase, l 100.0 1E-159 5E-164 1372.2 56.8 611 6-677 38-705 (746)
8 3hi7_A Amiloride-sensitive ami 100.0 6E-156 2E-160 1336.3 49.3 621 9-678 11-694 (731)
9 3pgb_A Putative uncharacterize 100.0 1E-154 4E-159 1326.4 52.2 630 4-677 61-736 (797)
10 1kmt_A RHO GDP-dissociation in 11.0 4.6E+02 0.016 24.3 6.4 63 260-337 34-96 (141)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=1.5e-189 Score=1604.13 Aligned_cols=635 Identities=35% Similarity=0.627 Sum_probs=591.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCC
Q 005333 6 QTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPP 85 (701)
Q Consensus 6 ~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~ 85 (701)
...|||||||++||++|++||+++..+ +.++|++|+|+||+|++|++ | + +.. .++|+
T Consensus 20 ~~~HPLDpLs~~Ei~~a~~iv~~~~~~----~~~~F~~i~L~EP~K~~v~~---~---------~--~~~-----~~~p~ 76 (692)
T 3sxx_A 20 RPAHPLDPLSTAEIKAATNTVKSYFAG----KKISFNTVTLREPARKAYIQ---W---------K--EQG-----GPLPP 76 (692)
T ss_dssp CCSSTTSCCCHHHHHHHHHHHHHHTTT----SCEEEEEEEEECCCHHHHHH---H---------H--HSC-----CCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCC----CCcEEEEEECCCCCHHHHHH---H---------H--hcC-----CCCCC
Confidence 447999999999999999999987653 57999999999999999984 2 1 111 14788
Q ss_pred ceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCC
Q 005333 86 RRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIED 165 (701)
Q Consensus 86 R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~ 165 (701)
|+|+|++++..++.++|++|+|+ +++|++|+.++++||+|+.||+.+||++|++||+|+++|++|||++
T Consensus 77 R~a~v~~~~~~~~~~~e~vVdl~-----------~~~v~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~ 145 (692)
T 3sxx_A 77 RLAYYVILEAGKPGVKEGLVDLA-----------SLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPA 145 (692)
T ss_dssp CEEEEEEEETTCSSEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCG
T ss_pred eEEEEEEEECCCCCEEEEEEECC-----------CCeEEEEEECCCCcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 99999999988889999999997 6899999999999999999999999999999999999999999965
Q ss_pred --CCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCce-ecCCCCCC
Q 005333 166 --MDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKL-VHLPPADP 242 (701)
Q Consensus 166 --~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~-~~~p~~~~ 242 (701)
+++|+||||++|+++.. +.++||+|++||+|.. +++|+|+|||| |+++||++++||++|++... .|+|+..
T Consensus 146 ~~~~~V~~dpw~~G~~~~~-~~~~Rl~~~~~y~r~~---~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~- 219 (692)
T 3sxx_A 146 NEMHKVYCDPWTIGYDERW-GTGKRLQQALVYYRSD---EDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHK- 219 (692)
T ss_dssp GGGGGEEEEEEECCCCTTT-TTSSCEEEEEEEECSS---TTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSC-
T ss_pred cccceEEEccccccccCCC-CCCceEEEEEEEEecC---CCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCC-
Confidence 44599999999998754 4589999999999973 46899999999 99999999999999988754 4554433
Q ss_pred CCCCCCCccC--CCCCCC-CCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEee
Q 005333 243 LRNYTAGETR--GGVDRS-DIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLS 319 (701)
Q Consensus 243 ~~~y~~~~~~--~~~~r~-~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrls 319 (701)
..||.+..+. ++. |+ ++|||+|+||||+||+|+||+|+||||+||||||+||||+||||+|+|+|+ .||||||+|
T Consensus 220 ~~~Y~p~~~~~~~~~-r~~d~kP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~R~V~YrlS 297 (692)
T 3sxx_A 220 HANFYPKHMIEKVGA-MRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGN-VRPIFHRIS 297 (692)
T ss_dssp CCCCSHHHHHHHHSS-CCCCCCCCEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred CCCCChHHccccCCC-CCCCCCCceecCCCCCcEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcCCCc-ceeeeeeee
Confidence 4689876543 344 88 999999999999999999999999999999999999999999999999765 699999999
Q ss_pred eeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCcccccc
Q 005333 320 FVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQ 399 (701)
Q Consensus 320 l~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~ 399 (701)
||||+||||||++||++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++|||+
T Consensus 298 l~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~Gil~kHt 377 (692)
T 3sxx_A 298 LSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHS 377 (692)
T ss_dssp EEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred hheeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeeccCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--ceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCC-cCCccceecCCCccccce
Q 005333 400 DWRTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGE-VRKYGTIIAPGLYAPVHQ 476 (701)
Q Consensus 400 d~~~g--~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~-~~~yGt~V~~~~~g~~Hq 476 (701)
|||++ .++++|+|+||||+|+|||||||||+|+|||||+||++|||||||+++++.+++ ..+|||+|+|+++|++||
T Consensus 378 ~~r~~~~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~Hq 457 (692)
T 3sxx_A 378 DFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQ 457 (692)
T ss_dssp CGGGTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEE
T ss_pred eccCCCceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCcccccee
Confidence 99998 899999999999999999999999999999999999999999999999998776 689999999999999999
Q ss_pred eeEEEEEeeeccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCC
Q 005333 477 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNR 553 (701)
Q Consensus 477 H~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~ 553 (701)
|+||||||||||| .+|||++.++++.+. ++.|||+++|++++|+++||++|++++++.++|+|+|+|++++|+
T Consensus 458 H~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~ 533 (692)
T 3sxx_A 458 HLFSLRIDPRIDG----DGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNP 533 (692)
T ss_dssp EEEEEEEEECTTS----SCBEEEEEEEEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCT
T ss_pred EEEEEEeccccCC----CCceEEEEEeEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCC
Confidence 9999999999998 699999999998775 568999999999999999999999999999999999999999999
Q ss_pred C-CCceeEEEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCC-CChhhhc-ccCCceeeCC
Q 005333 554 T-GQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETD 630 (701)
Q Consensus 554 ~-G~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~-~gl~~~~-~~~esI~~eD 630 (701)
+ |+|+||||+|++++++|+.|+|...+||+||+||||||||+|+|+||||+|+||+++.+ +||++|+ ++||+|+|||
T Consensus 534 ~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~D 613 (692)
T 3sxx_A 534 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 613 (692)
T ss_dssp TTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBC
T ss_pred CCCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCc
Confidence 8 99999999999999888999999999999999999999999999999999999997632 7999999 8999999999
Q ss_pred eEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCCCcccccc
Q 005333 631 IVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESDLDLKDT 686 (701)
Q Consensus 631 iV~W~t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~~~~~~~~ 686 (701)
|||||||||||+||+|||||||++++||+|||+|||++||+||+|++.+..+++++
T Consensus 614 iV~W~t~G~~HiPr~ED~PvMP~~~~gf~LrP~nFFd~NPaldvp~~~~~~~~~v~ 669 (692)
T 3sxx_A 614 ILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAK 669 (692)
T ss_dssp EEEEEEEEEEECCCGGGSSSCCCEEEEEEEEEESSSSSCTTTTSCCSEEECHHHHH
T ss_pred eEEEEecCcccCCchhcCCCCcceEEEEEEECCCcCCCCCcccCCCcccccChhhh
Confidence 99999999999999999999999999999999999999999999999999998876
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=4.8e-186 Score=1567.39 Aligned_cols=621 Identities=34% Similarity=0.575 Sum_probs=572.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005333 8 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 87 (701)
Q Consensus 8 ~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~ 87 (701)
.|||||||++||++|++||+++..+ .+.++|++|+|+||+|++|+.+ +..++.|. +.++|+|+
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~~------------l~~~~~g~--~~~~p~R~ 63 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG---PERPHFIQIDRLDPPKKDMIRY------------LEAERTGK--PLPHISRM 63 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS---SSCEEEEEEEECCCCHHHHHHH------------HHHHHHTC--CCCCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC---CCCcEEEEEECCCCCHHHHHHH------------HhhhhcCC--CCCCCCcE
Confidence 4999999999999999999987653 3579999999999999999842 22222221 22577899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCC-CCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005333 88 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPD-VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 166 (701)
Q Consensus 88 A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~-~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~~ 166 (701)
|+|+++. ++.++|++|+|+ +++|++|+.+++ +||+++.||+.+||++|++||+|+++|++|||+++
T Consensus 64 a~v~~~~--~~~~~e~vVdl~-----------~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~ 130 (633)
T 3loy_A 64 TYVYYYI--GLDFYKALVNVS-----------YGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPH 130 (633)
T ss_dssp EEEEEEE--TTEEEEEEEETT-----------TTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTT
T ss_pred EEEEEEe--CCCEEEEEEECC-----------CCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 9997766 678999999997 689999999997 89999999999999999999999999999999998
Q ss_pred CeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCce------ec---C
Q 005333 167 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKL------VH---L 237 (701)
Q Consensus 167 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~------~~---~ 237 (701)
+.|+||||++|+++ +.++||+||+||+|... ++++|+|+|||+ |+++||++++||++|++... .+ .
T Consensus 131 ~~V~~dpw~~G~d~---~~~~Rl~q~~~y~r~~~-~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~ 205 (633)
T 3loy_A 131 VRVVCDPWMNGTDS---KEDRMLIQCYMYLASAA-HPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAW 205 (633)
T ss_dssp EEEEEEEEECCCSS---CCCSCEEEEEEEEEETT-CTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCC
T ss_pred ceEEEeccccccCC---CCCcEEEEEEEEEecCC-CCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCC
Confidence 89999999999954 35799999999999632 568999999998 88999999999999987411 11 2
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEE
Q 005333 238 PPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHR 317 (701)
Q Consensus 238 p~~~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yr 317 (701)
++ ....+|.++.+. + .|+++||++|+||||+||+|+|++|+||+|+||||||+||||+||||+|+ | ||||||
T Consensus 206 ~~-~~~~~Y~p~~~~-~-~r~d~kp~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~Yr 277 (633)
T 3loy_A 206 DE-FPFVEYHPDLNG-E-TIVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFK----G-RSVVYR 277 (633)
T ss_dssp CC-CCCCCCSTTTSC-C-CCCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEE
T ss_pred CC-CCCCCcChhHcc-c-ccCCCCCcceeCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEEC----C-EEEEEE
Confidence 12 224689976654 3 49999999999999999999999999999999999999999999999997 3 889999
Q ss_pred eeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCcccc
Q 005333 318 LSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWK 397 (701)
Q Consensus 318 lsl~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~r 397 (701)
+|||||+||||||++||++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++||
T Consensus 278 lSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~k 357 (633)
T 3loy_A 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYK 357 (633)
T ss_dssp EEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEeccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCcccccee
Q 005333 398 HQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQH 477 (701)
Q Consensus 398 H~d~~~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH 477 (701)
|++||+|.++++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++.+++..+|||+|+|+++|++|||
T Consensus 358 Ht~~r~~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 437 (633)
T 3loy_A 358 HTNYRTNVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQH 437 (633)
T ss_dssp EECTTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCCTTEEEEETTEEEECEEE
T ss_pred eccccCCceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEEEEEEEEeeeecCCcccCCCcceecCCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred eEEEEEeeeccCCCCCCccEEEEEeeeecCCCC-CCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCC-C
Q 005333 478 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGK-NNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT-G 555 (701)
Q Consensus 478 ~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~-~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~-G 555 (701)
+||||||||||| .+|||++.++++.+.++ .||||++|+++++.+++| |+++++++++|+|+|+|++++|++ |
T Consensus 438 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G 511 (633)
T 3loy_A 438 MLSFRIDPAVDG----YENTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISK 511 (633)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTC
T ss_pred EEEEEecccccC----CCCEEEEEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCC
Confidence 999999999998 69999999988776543 799999999999999886 789999999999999999999995 9
Q ss_pred CceeEEEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEE
Q 005333 556 QLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWY 635 (701)
Q Consensus 556 ~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~ 635 (701)
+|+||||+|+.++++|+.|+|+.++||+||+||||||||+|+|+||||+|+||+.+ ++||++|+++||+|+||||||||
T Consensus 512 ~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~gl~~w~~~~e~i~n~DiV~W~ 590 (633)
T 3loy_A 512 KPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT-DTGLGVWARRDENVRNDNPVVWA 590 (633)
T ss_dssp SEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHTTCCCCCTTBCEEEEE
T ss_pred ccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCCccccCCCCccCCCC-CCChHHHhcCCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999975 57999999999999999999999
Q ss_pred eeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCC
Q 005333 636 VFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 678 (701)
Q Consensus 636 t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~ 678 (701)
||||||+||+|||||||++++||+|||+||||+||+||+|+|.
T Consensus 591 t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nP~ldvp~s~ 633 (633)
T 3loy_A 591 TLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSVPQST 633 (633)
T ss_dssp EEEEEECCCGGGCSSEEEEEEEEEEEEESSSSSCGGGGSCCCC
T ss_pred ecCcccCCCcccCCCCccceeeEEEEcCCcCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999974
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=6e-184 Score=1556.95 Aligned_cols=622 Identities=39% Similarity=0.677 Sum_probs=580.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCC
Q 005333 5 AQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLP 84 (701)
Q Consensus 5 ~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p 84 (701)
....|||||||++||++|++||+++... ++.++|++|+|+||+|++ ++ ++|
T Consensus 4 ~~~~HPldpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~eP~K~~---------------------g~-----~~P 54 (646)
T 1w6g_A 4 IQTASPFRLASAGEISEVQGILRTAGLL---GPEKRIAYLGVLDPARGA---------------------GS-----EAE 54 (646)
T ss_dssp ---CCTTCCCCHHHHHHHHHHHHHTTCC---CTTEEEEEEEECCCCSCC---------------------SS-----SCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcccC---CCCcEEEEEEccCCchhh---------------------CC-----CCC
Confidence 3457999999999999999999997652 357999999999999964 12 267
Q ss_pred CceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEE---eeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHc
Q 005333 85 PRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVIS---SKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKR 161 (701)
Q Consensus 85 ~R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~---~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~ 161 (701)
+|+|+|+++++.++.++|++|+|+ .++|++ |+.++++||+++.+|+.+++++|+++|.|+++|++|
T Consensus 55 ~R~A~vv~~~~~~~~~~E~vV~L~-----------~~~v~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~ 123 (646)
T 1w6g_A 55 DRRFRVFIHDVSGARPQEVTVSVT-----------NGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAAR 123 (646)
T ss_dssp CCEEEEEEEETTSCCCEEEEEETT-----------TTEEEEEEECCHHHHCBCCCCHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CeEEEEEEEECCCCcEEEEEEECC-----------CCeEEecccceeCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHc
Confidence 999999999987888999999997 578998 899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCC
Q 005333 162 GIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPAD 241 (701)
Q Consensus 162 gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~ 241 (701)
||+++..|+| ||++||+++..+.++|++|++||+|.. +.+|+|+|||+||+++||+.++||++|.+.+.++.|.
T Consensus 124 gl~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~-- 197 (646)
T 1w6g_A 124 NLDVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDF---PEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA-- 197 (646)
T ss_dssp TCCGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSS---TTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC--
T ss_pred CCCCCCeeEE-eecccccCCccCCCcEEEEEEEEEecC---CCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC--
Confidence 9998888999 999998776655689999999999873 4589999999999999999999999999876556654
Q ss_pred CCCCCCCCccCCCCCCCCCCCCeecCCCCCeEEEc-ceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeee
Q 005333 242 PLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVN-GHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSF 320 (701)
Q Consensus 242 ~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~-g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl 320 (701)
...+|.+..+.++. |+++|||+|+||||+||+|+ |++|+||||+||||||+||||+||||+|+|+|+ .||||||+||
T Consensus 198 ~~~~y~~~~~~~~~-r~~lkP~~i~QPeGpsF~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~~g~-~R~V~YrlSl 275 (646)
T 1w6g_A 198 EHGNYTDPELTGPL-RTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASI 275 (646)
T ss_dssp SCCCTTCHHHHCSC-CCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEE
T ss_pred CCCccchhhcCCCc-CCCCCCceecCCCCCceEEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcCCCC-ceEEEEEeee
Confidence 24689876554444 99999999999999999999 999999999999999999999999999999765 6999999999
Q ss_pred eeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccc
Q 005333 321 VEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQD 400 (701)
Q Consensus 321 ~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d 400 (701)
|||+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++|||+|
T Consensus 276 sEm~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~GilwkH~~ 355 (646)
T 1w6g_A 276 AEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSD 355 (646)
T ss_dssp EEEEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEEC
T ss_pred eEEEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCCcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEE
Q 005333 401 WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFV 480 (701)
Q Consensus 401 ~~~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~ 480 (701)
|++|.++++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++.+ +..+|||+|+|+++|++|||+||
T Consensus 356 ~r~~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t~~~~~-~~~~yGt~V~~~v~a~~HqH~f~ 434 (646)
T 1w6g_A 356 LWSGINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFTSAFPE-GGSDNISQLAPGLGAPFHQHIFS 434 (646)
T ss_dssp TTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCT-TCCSSEEEEETTEEEECEEEEEE
T ss_pred ccCCceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEeeeecCC-ccCCCcceecCCcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999876 66889999999999999999999
Q ss_pred EEEeeeccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeE
Q 005333 481 ARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGY 560 (701)
Q Consensus 481 ~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gY 560 (701)
||||||||| .+|||++.+++..+.++.|||+++|++++|++++|+||++++++.++|+|+|+|++++|++|+|+||
T Consensus 435 ~RlD~dIdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gY 510 (646)
T 1w6g_A 435 ARLDMAIDG----FTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 510 (646)
T ss_dssp EEEEECTTS----SCBEEEEEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEE
T ss_pred EeecccccC----CCCEEEEEeeEeccCCCCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeE
Confidence 999999998 6999999999988876789999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEeeccc
Q 005333 561 KLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVT 640 (701)
Q Consensus 561 rl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~ 640 (701)
||+|++++++|+.|+|+.++||.|++||||||||+|+|+||+|+|+||+.+ .+||++|+++||+|+|+|||||||||+|
T Consensus 511 kl~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~ 589 (646)
T 1w6g_A 511 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLT 589 (646)
T ss_dssp EEEECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHHTTCCBCTTBCEEEEEEEEEE
T ss_pred EEccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCcccCCC-CCChhHHhhCCCCcccCceEEEEeCccc
Confidence 999999999999999999999999999999999999999999999999976 4699999999999999999999999999
Q ss_pred cCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCCC
Q 005333 641 HIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESD 680 (701)
Q Consensus 641 HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~~ 680 (701)
|+||+|||||||++++||+|||+|||++||+||+|++.|+
T Consensus 590 H~Pr~ED~PvMP~~~~~f~L~P~nFF~~nP~ldvp~~~~~ 629 (646)
T 1w6g_A 590 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQ 629 (646)
T ss_dssp ECCCGGGSSSEEEEEEEEEEEESSCSSSCTTTTCCCC---
T ss_pred cCCCccccCCCCCceEEEEEEecCcCCCCCCccCCCcccc
Confidence 9999999999999999999999999999999999998775
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=2.3e-180 Score=1530.19 Aligned_cols=624 Identities=27% Similarity=0.491 Sum_probs=572.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 005333 8 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 87 (701)
Q Consensus 8 ~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~ 87 (701)
.|||||||++||++|++||+++...+ ...++|++|+|+||+|++|++ | +. +.++ ++|+|+
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------l~-~~~~-----~~P~R~ 61 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPIS--NNRLAFHYIGLDDPEKDHVLR---Y---------ET-HPTL-----VSIPRK 61 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTT--TCCEEEEEEEECCCCHHHHHH---H---------HH-CGGG-----CCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCC--CCceEEEEEECCCCCHHHHHH---H---------Hh-hcCC-----CCCCcE
Confidence 69999999999999999999987521 346899999999999999984 2 11 2232 368999
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCC-CCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 005333 88 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPD-VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 166 (701)
Q Consensus 88 A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~-~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~~~ 166 (701)
|+|+++.+ +.++|++|+|+ +++|++++..+. +||+++.+|+.++++++++||.|+++|+++||+ +
T Consensus 62 A~vv~~~~--~~~~E~vV~L~-----------~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~-~ 127 (642)
T 1ksi_A 62 IFVVAIIN--SQTHEILINLR-----------IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLN-L 127 (642)
T ss_dssp EEEEEEET--TEEEEEEEETT-----------TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCC-G
T ss_pred EEEEEEeC--CeEEEEEEECC-----------CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCC-c
Confidence 99999854 67899999997 578887555542 499999999999999999999999999999997 6
Q ss_pred CeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCCCCCC
Q 005333 167 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 246 (701)
Q Consensus 167 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~~~~y 246 (701)
..|+||||++|+++..+ ++|++|++||++. .++|+|+||||||+++||+.+++|++|++.+.+++|+.. ..+|
T Consensus 128 ~~v~~~pw~~g~~~~~~--~~Rl~~~~~~~~~----~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~-~~~y 200 (642)
T 1ksi_A 128 SEIVCSSFTMGWFGEEK--NVRTVRLDCFMKE----STVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAE-NTEY 200 (642)
T ss_dssp GGEEEEEECCCCCSCSC--CCCEEEEEEEECS----SCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCT-TCCC
T ss_pred cceEEecccccCCCCCC--CcEEEEEEEEEec----CCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCC-CCCc
Confidence 68999999999987653 6899999999995 258999999999999999999999999987667776544 2479
Q ss_pred CCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCC-ceeEEEEeeeeeEEe
Q 005333 247 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRG-RRPVAHRLSFVEMVV 325 (701)
Q Consensus 247 ~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g-~R~I~Yrlsl~Em~v 325 (701)
.+..+.++. |+++||++|+||||+||+|+|++|+||||+||||||+||||+||||+|+|.++| .||||||+|||||+|
T Consensus 201 ~~~~~~~~~-r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~V 279 (642)
T 1ksi_A 201 QVSKQSPPF-GPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFV 279 (642)
T ss_dssp CSTTCCSCC-CCCCCCBEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred cccccCCCC-CCCCCCceecCCCCCCEEEeCcEEeeCCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEE
Confidence 877665554 999999999999999999999999999999999999999999999999985433 489999999999999
Q ss_pred ecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccCCC-
Q 005333 326 PYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG- 404 (701)
Q Consensus 326 pY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~~g- 404 (701)
|||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++|||+|++++
T Consensus 280 PYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~gilwkH~~~r~~~ 359 (642)
T 1ksi_A 280 PYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPN 359 (642)
T ss_dssp EBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEECCSTT
T ss_pred eCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEEEcCCEEEEEeccCCcceeeccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeCCC-----CcCCccceecCCCcccccee
Q 005333 405 --LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPG-----EVRKYGTIIAPGLYAPVHQH 477 (701)
Q Consensus 405 --~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~-----~~~~yGt~V~~~~~g~~HqH 477 (701)
.++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+|.++... +..+|||+|+|+++|++|||
T Consensus 360 ~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH 439 (642)
T 1ksi_A 360 ESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDH 439 (642)
T ss_dssp CCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEE
T ss_pred ceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccceE
Confidence 47899999999999999999999999999999999999999999999877542 24789999999999999999
Q ss_pred eEEEEEeeeccCCCCCCccEEEEEeeeecCCC-CCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCC
Q 005333 478 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPG-KNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 556 (701)
Q Consensus 478 ~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~-~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~ 556 (701)
+||||||||||| .+|||++.+++..+.. +.||++++|+++++++++|++|++++++. +|+|+|+|++++|++|+
T Consensus 440 ~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~-~r~~~i~N~~~~N~~G~ 514 (642)
T 1ksi_A 440 FYIYYLDFDIDG----THNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLA-PAELVVVNPNIKTAVGN 514 (642)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGGGCBCTTSS-CEEEEEEEEEEECTTSC
T ss_pred EEEEeeccCCCC----CCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhhhhhccCCC-ceEEEEEcCCCcCCCCC
Confidence 999999999998 6999999999876654 57999999999999999999999999999 99999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEe
Q 005333 557 LTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYV 636 (701)
Q Consensus 557 p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t 636 (701)
|+||||+|++++++|+.|+|+.++||+||+||||||||+|+|+||+|+|+||+++ ++|+.+|+++||+|+|+|||||||
T Consensus 515 p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~~-~~gl~~~~~~~~~i~~~DiV~W~t 593 (642)
T 1ksi_A 515 EVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRG-DDTLAVWTKQNREIVNKDIVMWHV 593 (642)
T ss_dssp EEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHGGGCCBCSSBCEEEEEE
T ss_pred eeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCCC-CCChhhhhhCCCccccCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999975 579999999999999999999999
Q ss_pred eccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCCC
Q 005333 637 FGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 679 (701)
Q Consensus 637 ~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~~ 679 (701)
||+||+||+|||||||++++||+|||+|||++||+||+|++..
T Consensus 594 ~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~ 636 (642)
T 1ksi_A 594 VGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 636 (642)
T ss_dssp EEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCB
T ss_pred cccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCcc
Confidence 9999999999999999999999999999999999999999864
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=3.7e-176 Score=1517.21 Aligned_cols=621 Identities=28% Similarity=0.543 Sum_probs=566.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCC
Q 005333 5 AQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLP 84 (701)
Q Consensus 5 ~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p 84 (701)
....|||||||++||++|+++|+++... .+.++|.+|+|+||+|++|++ | + ..+++ ++|
T Consensus 90 ~~~~HPLdpLs~~Ei~~a~~il~~~~~~---~~~~~F~~i~L~eP~K~~vl~---~---------~--~~~~~----~~p 148 (727)
T 1spu_A 90 EKRPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLLPPDKEAVWA---F---------A--LENKP----VDQ 148 (727)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHTSTTC---CTTCEEEEEEEECCCHHHHHH---H---------H--HHCCC----CCC
T ss_pred cccCCCCCcCCHHHHHHHHHHHHhcccC---CCCcEEEEEEecCCCHHHHHh---H---------H--hcCCC----CCC
Confidence 3457999999999999999999986432 357999999999999999984 2 1 22332 367
Q ss_pred CceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCC
Q 005333 85 PRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIE 164 (701)
Q Consensus 85 ~R~A~vv~~~~~~~~~~e~~V~L~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~~~~a~~~~gl~ 164 (701)
+|+|+|+++++ +.++|++|+|. +++|++|+.++++||+++.+|+.+++++|+++|.|+++|+++||+
T Consensus 149 ~R~A~vv~~~~--~~~~e~vV~l~-----------~~~v~~~~~~~~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~ 215 (727)
T 1spu_A 149 PRKADVIMLDG--KHIIEAVVDLQ-----------NNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGIT 215 (727)
T ss_dssp CCEEEEEEEET--TEEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCS
T ss_pred CeEEEEEEEeC--CeEEEEEEeCC-----------CCceEEEEeCCCcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCC
Confidence 99999999865 67899999997 689999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecccccccCCCCC--CCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccEEEEEecCceecCCCCCC
Q 005333 165 DMDLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADP 242 (701)
Q Consensus 165 ~~~~v~~dpw~~G~~~~~~~--~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~v~~~~~~~~~~~p~~~~ 242 (701)
++..|+||||++|+++.+++ .++|++|++||+.. +++|+|+|||+||+++||+.++||++|++...+++|...
T Consensus 216 ~~~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~----~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~~- 290 (727)
T 1spu_A 216 DAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDV----GDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTA- 290 (727)
T ss_dssp CTTSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECC----SSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCSC-
T ss_pred ccceEEEccccccccCCCCCCCCCcEEEEEEEEEEC----CCCCccccCccceEEEEecccCEEEEEEcCCccccCCCC-
Confidence 99999999999998774442 47999999999843 358999999999999999999999999987766666433
Q ss_pred CCCCCCCccCCCCCCCCCCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeee
Q 005333 243 LRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVE 322 (701)
Q Consensus 243 ~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~E 322 (701)
.+|.+.. + .|+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .||||||+||||
T Consensus 291 -~~y~~~~---~-~r~~lkP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~r~V~YrlSl~E 364 (727)
T 1spu_A 291 -RPFDGRD---R-VAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGT-KRKVMYEGSLGG 364 (727)
T ss_dssp -CCSSSTT---E-ECCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred -CCccccc---c-ccCCCCCccccCCCCCCEEECCCccccCCcEEEEecCCCCceEEEEEEEcCCCc-eEEEEEEeEeeE
Confidence 4688653 2 489999999999999999999999999999999999999999999999998765 699999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCccccccccC
Q 005333 323 MVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWR 402 (701)
Q Consensus 323 m~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~l~rH~d~~ 402 (701)
|+||||||++||++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+|++|||+||+
T Consensus 365 m~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~G~l~kH~~~~ 444 (727)
T 1spu_A 365 MIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMG 444 (727)
T ss_dssp EEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEECCTT
T ss_pred EEEeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEecccCCcceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEEEEEEEEeeeeC-----CC---CcCCccceecCCCcccc
Q 005333 403 TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQ-----PG---EVRKYGTIIAPGLYAPV 474 (701)
Q Consensus 403 ~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~t~~~~-----~~---~~~~yGt~V~~~~~g~~ 474 (701)
+ .+.++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++. ++ +..+|||+|+|+++|++
T Consensus 445 ~-~~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~ 523 (727)
T 1spu_A 445 Q-PNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523 (727)
T ss_dssp S-CCEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEEC
T ss_pred C-CceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCccccc
Confidence 5 467789999999999999999999999999999999999999999987532 11 23689999999999999
Q ss_pred ceeeEEEEEeeeccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCC
Q 005333 475 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT 554 (701)
Q Consensus 475 HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~ 554 (701)
|||+||||||||||| .+|||++.+++..+.++.||++++|++++|++++|++|++++++.++|+ |+|++++|++
T Consensus 524 HqH~f~~RlD~dVdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~ 597 (727)
T 1spu_A 524 HQHIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRM 597 (727)
T ss_dssp EEEEEEEEEEECTTS----SEEEEEEEEEEEEECCSCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTT
T ss_pred ceeEEEEeecccccC----CCCeEEEEeeEEccCCCCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCC
Confidence 999999999999998 6999999999887776789999999999999999999999999998887 8999999999
Q ss_pred CCceeEEEecC--CC----CCCCCCCchhhhhhhcccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceee
Q 005333 555 GQLTGYKLVPG--SN----CLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEE 628 (701)
Q Consensus 555 G~p~gYrl~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~ 628 (701)
|+|+||||+|. .. +.+++.|+|+.++||+||+||||||||+|+|+||+|+|+||+++ +.||++|+++||+|+|
T Consensus 598 G~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~-~~gl~~~~~~~e~i~~ 676 (727)
T 1spu_A 598 GNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDN 676 (727)
T ss_dssp SCEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHHTTCCBCSS
T ss_pred CCeeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccc
Confidence 99999999993 32 45788999999999999999999999999999999999999975 4699999999999999
Q ss_pred CCeEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCC
Q 005333 629 TDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 678 (701)
Q Consensus 629 eDiV~W~t~G~~HiPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~s~ 678 (701)
+|||||||||+||+||+|||||||++++||+|||+||||+||+||+|++.
T Consensus 677 ~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nPaldvp~~~ 726 (727)
T 1spu_A 677 TDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKD 726 (727)
T ss_dssp EEEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEESSSSSCTTSCCBC--
T ss_pred CCcEEEEecccccCCChhhCCCCcccEEEEEEEeCCCCCCCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999874
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=7.6e-160 Score=1372.81 Aligned_cols=609 Identities=20% Similarity=0.317 Sum_probs=533.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCC-CCce---EEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCC
Q 005333 5 AQTSHPLDPLSAAEISVAVATVRAAGATPEV-RDSM---RFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIP 80 (701)
Q Consensus 5 ~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~-~~~~---~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~ 80 (701)
....|||||||++||++|+++|+++...... ...+ .|..|+|.||+|.+|++ +|+++++
T Consensus 15 ~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~--------------~Ld~~g~--- 77 (747)
T 1w7c_A 15 APKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT--------------YLDEDGD--- 77 (747)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH--------------HHHSCCC---
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHh--------------HhhCCCC---
Confidence 4457999999999999999999987312111 1234 68999999999999984 2455553
Q ss_pred CCCCCceEEEEEEECC--CCcEEEEEEe-CccccccccCCcccceEEEeeecC---C----CCC----CCCHHHHHHHHH
Q 005333 81 TKLPPRRARLVVYNKR--SNETSIWVVE-LSEVHAATRGGHHRGKVISSKVVP---D----VQP----PMDAVEYAECEA 146 (701)
Q Consensus 81 ~~~p~R~A~vv~~~~~--~~~~~e~~V~-L~~~~~~~~~~~~~~~v~~~~~~~---~----~~~----p~~~~E~~~~~~ 146 (701)
+|+|+|+|+++++. .+.++|++|+ |+ .+++++++.++ + .+| +++.+|+.++++
T Consensus 78 --~P~R~A~vv~~~~~~~~~~~~E~vV~PL~-----------~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~ 144 (747)
T 1w7c_A 78 --LPPRNARTVVYFGEGEEGYFEELKVGPLP-----------VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSS 144 (747)
T ss_dssp --CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------CCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHH
T ss_pred --CCCceEEEEEEeCCCCCCceEEEEEcCCC-----------CCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHH
Confidence 68999999999884 3788999998 98 45677787773 2 346 999999999999
Q ss_pred HHhcChhHHHHH------HHcC-CCCCCeEEEeccccccc--CCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEE
Q 005333 147 VVKDFPPFREAM------KKRG-IEDMDLVMVDPWCVGYH--SDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHV 217 (701)
Q Consensus 147 ~~~~~p~~~~a~------~~~g-l~~~~~v~~dpw~~G~~--~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~ 217 (701)
+|+ .+++++ +++| ++... ||+|++|.. +. ..++|++|++|| |.. .+ +|+|+||| ||++
T Consensus 145 ~~~---~~~~~~~~~~l~~~~g~~~~~~---l~~w~~~~~~~~~--~~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~ 211 (747)
T 1w7c_A 145 FLN---KNLNTTIMRDVLEGLIGVPYED---MGCHSAAPQLHDP--ATGATVDYGTCN-INT--EN-DAENLVPT-GFFF 211 (747)
T ss_dssp HHH---HHHTSHHHHHHHHHHHSSCGGG---EEEEECSSCEECT--TTCCEEEEEEEE-ECC--SS-SCGGGCEE-EEEE
T ss_pred HHH---HHHHHHhhccchhhcCCcccce---eeeecccCCcCCC--CCCceEEEEEEE-Eec--CC-CCccccce-eeEE
Confidence 999 666666 6788 76554 899998864 32 247899999996 432 23 79999999 8999
Q ss_pred EEecc-----ccEEEEEecCc------------------eecCCCCCCCCCCC---CCccC-CC-CCCCCCCCCeecCCC
Q 005333 218 LVDMQ-----NMVVIEFEDRK------------------LVHLPPADPLRNYT---AGETR-GG-VDRSDIKPLQIVQPE 269 (701)
Q Consensus 218 ~vD~~-----~~~v~~~~~~~------------------~~~~p~~~~~~~y~---~~~~~-~~-~~r~~lkp~~i~QPe 269 (701)
+||++ +++|++|...+ +.+++.+ ..+|. +..++ ++ .+|+++|||+|+|||
T Consensus 212 ~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p--~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPe 289 (747)
T 1w7c_A 212 KFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID--VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPE 289 (747)
T ss_dssp EEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC--TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTT
T ss_pred EEeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC--CCCCcccchhhcccCCCCcccCCCCCcccCCC
Confidence 99997 57999975432 1111111 12332 22322 21 248999999999999
Q ss_pred CCeEEEccee--EeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeeecCCCCC
Q 005333 270 GPSFRVNGHF--VEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGL 347 (701)
Q Consensus 270 G~sF~V~g~~--V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD~geyG~ 347 (701)
|+||+|+|++ |+||+|+||||||+||||+||||+|+ | ||||||+|||||+||||||++++++++|||.| ||+
T Consensus 290 G~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g-yG~ 363 (747)
T 1w7c_A 290 GRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----G-ERIVYELSLQELIAEYGSDDPFNQHTFYSDIS-YGV 363 (747)
T ss_dssp CCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-HCS
T ss_pred CCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeEC----C-EEEEEEEEeeeEEeccCCCCchhheeeeeccc-cCc
Confidence 9999999999 99999999999999999999999997 4 88999999999999999999999999999999 999
Q ss_pred ccCCCCCCCCCCCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCc-cccccccCCCceeeeeccEEEEEEeeeecccc
Q 005333 348 GKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANYE 426 (701)
Q Consensus 348 G~~a~~L~~G~DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~-l~rH~d~~~g~~~v~r~r~LVvr~i~TVgNYD 426 (701)
|. ||+|++||||||+|+|||++++ ++|+|++++|||||||+|+|+ +|||+|+ +.++++|+|+||||+|+||||||
T Consensus 364 G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~--~~~~v~r~r~LVvr~i~TVgNYd 439 (747)
T 1w7c_A 364 GN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA--SYSAITQNPTLNVRFISTIGNAD 439 (747)
T ss_dssp SS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET--TEEEEECCEEEEEEEEECCCC-C
T ss_pred cc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC--CcceeeeCceEEEEEEEeccccc
Confidence 99 9999999999999999999999 999999999999999999998 8999999 78999999999999999999999
Q ss_pred eEEEEEEeccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEeeeccCCCCCCccEEEEEeeeec
Q 005333 427 YAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVE 506 (701)
Q Consensus 427 Yi~~~~F~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~ 506 (701)
|||+|+|||||+||++|+|||||++.++.+++..+|||+|+++++|++|||+||||||||||| .+|||++.+++++
T Consensus 440 Yif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~ 515 (747)
T 1w7c_A 440 YNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG----TKNRASQYVMKDV 515 (747)
T ss_dssp EEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEE
T ss_pred eEEEEEEecCCeEEEEEEeeEEEeccccCCCCcCCCcceecCCcccCccceEEEEEeccccCC----CCCEEEEEeeEEc
Confidence 999999999999999999999999999987766899999999999999999999999999998 6999999999987
Q ss_pred CCCCCCCCCc-----ceEEEEEEEehHHhhhhccC-CCCCeEEEEecCCCcCCCCCceeEEEecCCC-CCCCCCCchhhh
Q 005333 507 EPGKNNVHNN-----AFYAEEELLKSELQAMRDCN-PLTARHWIIRNTRTVNRTGQLTGYKLVPGSN-CLPLAGSEAKVL 579 (701)
Q Consensus 507 ~~~~~np~~~-----~~~~~~t~~~~e~~a~~~~~-~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~-~~~l~~~~s~~~ 579 (701)
+. .|||++ +|++++|++++|.+|+++++ ..++|+| |+|++++|++|+|+||||+|+++ +++++.++|+..
T Consensus 516 ~~--~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s~~~ 592 (747)
T 1w7c_A 516 DV--EYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGP 592 (747)
T ss_dssp EE--ECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCS
T ss_pred cc--CCCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCchhh
Confidence 76 499999 89999999999999999999 5779999 99999999999999999999998 889999999999
Q ss_pred hhhcccccceEEeecCCCCcCCCCCCCCCCCCCC--CChhhhcccCCceeeCCeEEEEeeccccCCCCCCCCCc--ccce
Q 005333 580 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVG--EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--PVDR 655 (701)
Q Consensus 580 ~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pvm--p~~~ 655 (701)
+||+||+||||||||+|+|+||||+| ||+..++ .+|++|+ +||+|+|+|||||||||+||+||+|||||| |+++
T Consensus 593 ~ra~fa~~~lwVT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~tP~~~ 670 (747)
T 1w7c_A 593 ETQNWARSNLFLTKHKDTELRSSTAL-NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAH 670 (747)
T ss_dssp SSCGGGGSSEEEEECCTTCCCSCCTT-CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSE
T ss_pred hcchhccCcEEEecCCCCccCCCCCc-cccCCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCCCcce
Confidence 99999999999999999999999999 6664322 5799999 999999999999999999999999999999 8899
Q ss_pred eeEEEEeCCCCCCCCCCCCCCC
Q 005333 656 IGFMLMPHGFFNCSPAVDVPPN 677 (701)
Q Consensus 656 ~~f~L~P~nFFd~nP~ld~p~s 677 (701)
+||+|||+|||++||+||+|++
T Consensus 671 ~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 671 ASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp EEEEEEEESSSSSCTTTTCSSE
T ss_pred EEEEEEeCCcCCCCCCccCCCc
Confidence 9999999999999999999998
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=1.4e-159 Score=1372.18 Aligned_cols=611 Identities=22% Similarity=0.291 Sum_probs=509.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCC--C----CCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCC
Q 005333 6 QTSHPLDPLSAAEISVAVATVRAAGATPE--V----RDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPII 79 (701)
Q Consensus 6 ~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~--~----~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~ 79 (701)
...|||||||++||++|+++|+++..... . ..+..+..|+|.||+|.+|++ +|+++++
T Consensus 38 ~~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~--------------~Ld~~~~-- 101 (746)
T 1tu5_A 38 DQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALA--------------HLDRGSP-- 101 (746)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHH--------------HHHHCCC--
T ss_pred CCCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhh--------------hhcCCCC--
Confidence 44699999999999999999988741110 0 112457789999999999984 2355543
Q ss_pred CCCCCCceEEEEEEECC--CCcEEEEEEe-CccccccccCCcccceEEEeeec-----CCCCC----CCCHHHHHHHHHH
Q 005333 80 PTKLPPRRARLVVYNKR--SNETSIWVVE-LSEVHAATRGGHHRGKVISSKVV-----PDVQP----PMDAVEYAECEAV 147 (701)
Q Consensus 80 ~~~~p~R~A~vv~~~~~--~~~~~e~~V~-L~~~~~~~~~~~~~~~v~~~~~~-----~~~~~----p~~~~E~~~~~~~ 147 (701)
+|+|+|+|+++++. .+.++|++|+ |+ .+++ ++.+ .+.+| +++.+|+.+++++
T Consensus 102 ---~P~R~A~vv~~~~~~~~~~v~E~vV~PL~-----------~~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~ 165 (746)
T 1tu5_A 102 ---PPAREALAIVFFGGQPQPNVTELVVGPLP-----------QPSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQM 165 (746)
T ss_dssp ---CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------SCCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHH
T ss_pred ---CCCccEEEEEEeCCCCCCceEEEEecCCC-----------CCcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHH
Confidence 68999999999884 3789999998 97 3443 4444 23455 9999999999999
Q ss_pred HhcChhHHHHHHHcCC---CCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEecc--
Q 005333 148 VKDFPPFREAMKKRGI---EDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQ-- 222 (701)
Q Consensus 148 ~~~~p~~~~a~~~~gl---~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~-- 222 (701)
|+++|.++++++++|+ ++.. +|+++|..|..+.+ .++|++|++|| |.. .+ +|+|+||| ||+++||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~p~~~~--~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~vD~~~~ 237 (746)
T 1tu5_A 166 IFNRELPQAAGVLHHCCSYKQGG-QKLLTMNSAPRGVQ--SGDRSTWFGIY-YNI--TK-GGPYLHPV-GLELLVDHKAL 237 (746)
T ss_dssp HHHTTGGGGHHHHHHHHCTTTTC-CCEEEECCSSCSSS--TTCCEEEEEEE-ECC--SS-SCGGGSEE-EEEEEEECCSS
T ss_pred HHHCHHHHHHHHHhcCCCcccCC-EEEeCccccCCcCC--CCcEEEEEEEE-Eec--CC-CCccccce-eeEEEEeCCCC
Confidence 9999999999999665 5554 88999976654432 47899999886 432 22 79999999 899999997
Q ss_pred ---ccEEEEEecCc-ee----------------cCCCCCCCCCCCCCc--cCCCCCCCCCCCCeecCCCCCeEEEcceeE
Q 005333 223 ---NMVVIEFEDRK-LV----------------HLPPADPLRNYTAGE--TRGGVDRSDIKPLQIVQPEGPSFRVNGHFV 280 (701)
Q Consensus 223 ---~~~v~~~~~~~-~~----------------~~p~~~~~~~y~~~~--~~~~~~r~~lkp~~i~QPeG~sF~V~g~~V 280 (701)
++||++|...+ .. +++.. .+|.+.. .+....|.++ ||+|+||||+||+|+|++|
T Consensus 238 D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p---~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~V 313 (746)
T 1tu5_A 238 DPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIP---DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNRV 313 (746)
T ss_dssp SGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCC---C-----------------------------CEEEETTEE
T ss_pred CcccCEEEEEEECCCccCchhhhhcccccCCcccccCc---cccCcccccccccccCCCC-CcceeCCCCCCEEecCCcc
Confidence 68999987432 11 11111 1244333 2211125555 9999999999999999999
Q ss_pred eeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCC
Q 005333 281 EWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDC 360 (701)
Q Consensus 281 ~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DC 360 (701)
+||||+||||||+||||+||||+|+ | |+||||+|||||+||||||++++.+++|||. +||+|.+||+|++||||
T Consensus 314 ~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~-~yG~G~~a~~L~~GcDC 387 (746)
T 1tu5_A 314 ASSLWTFSFGLGAFSGPRVFDVRFQ----G-ERLAYEISLQEAGAVYGGNTPAAMLTRYMDS-GFGMGYFATPLIRGVDC 387 (746)
T ss_dssp EESSEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGG-GTCTTTTBCCCCBTTTB
T ss_pred cCCCcEEEEecCCCCceEEEeeEEC----C-eeEEEEEEeeeEEeecCCCCchhhcceeecc-ccCcccccccCccCCCC
Confidence 9999999999999999999999997 4 8899999999999999999666666666665 59999999999999999
Q ss_pred CCCeeEeeeeeecCCCceEEeeceEEeeeecCCc-cccccc--cCCCceeeeeccEEEEEEeeeecccceEEEEEEeccc
Q 005333 361 LGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQD--WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDG 437 (701)
Q Consensus 361 pg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~-l~rH~d--~~~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dG 437 (701)
||+|+|||+++++++|+|++++|||||||+|+|+ +|||+| |+ +.++++|+|+||||+|+|||||||||+|+|||||
T Consensus 388 pg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~-~~~~v~r~r~LVvr~i~TVgNYdYi~~w~F~qdG 466 (746)
T 1tu5_A 388 PYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS-HYFGGVAQTVLVFRSVSTMLNADYVWDMVFYPNG 466 (746)
T ss_dssp CTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC-CCCCEEEEEEEEEEEEEEETTEEEEEEEEECTTS
T ss_pred CCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC-CceeeecccEEEEEEEEeecccceEEEEEEecCC
Confidence 9999999999999999999999999999999998 799999 77 6789999999999999999999999999999999
Q ss_pred cEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEeeeccCCCCCCccEEEEEeeeecCCCCCCCCCcc
Q 005333 438 KIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNA 517 (701)
Q Consensus 438 tIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np~~~~ 517 (701)
+||++|+|||||+++++.++ ..+|||+|+++++|++|||+||||||||||| .+|||++.+++..+. .|||+++
T Consensus 467 ~Ie~ev~aTGil~t~~~~~~-~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~~~--~np~~~~ 539 (746)
T 1tu5_A 467 AIEVKLHATGYISSAFLFGA-ARRYGNQVGEHTLGPVHTHSAHYKVDLDVGG----LENWVWAEDMAFVPT--AIPWSPE 539 (746)
T ss_dssp CEEEEEEEEECCCCEECCTT-GGGGEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--EETTEEE
T ss_pred cEEEEEEecceEeeeecCCC-CCCCcceecCCccccccceEEEEEecccccC----CCCEEEEEeeEEccc--CCCCCcc
Confidence 99999999999999988754 4789999999999999999999999999997 699999999998776 4999999
Q ss_pred -----eEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecCCCCCCCCCCchhhhhhhcccccceEEe
Q 005333 518 -----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVT 592 (701)
Q Consensus 518 -----~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT 592 (701)
|++++|++++|++|++++++.++|+| |+|++++|++|+|+||||+|++++.+|+.++|...+||+||+||||||
T Consensus 540 ~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT 618 (746)
T 1tu5_A 540 HQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAIT 618 (746)
T ss_dssp EEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEEE
T ss_pred cccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEEe
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCCCCCCCCCCCC-CC-CChhhhcccCCceeeCCeEEEEeeccccCCCCCCCCCc--ccceeeEEEEeCCCCCC
Q 005333 593 PYAHDEMYPGGEFPNQNPR-VG-EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--PVDRIGFMLMPHGFFNC 668 (701)
Q Consensus 593 ~y~d~E~~asg~y~nq~~~-~~-~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pvm--p~~~~~f~L~P~nFFd~ 668 (701)
||+|+|+||+|+| ||+.. .+ .+|++|+ +||+|+|+|||||||||+||+||+|||||| |++++||+|||+|||++
T Consensus 619 ~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~~ 696 (746)
T 1tu5_A 619 QRKETEPSSSSVF-NQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQ 696 (746)
T ss_dssp ECCTTCCCSSCTT-TTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEEEEEEESSSSS
T ss_pred ccCCCcccCCccc-cccCCCCCCccHhhhc-CCCCccCCceEEEEecccccCCChhccCccCCCccEEEEEEEeCCCCCC
Confidence 9999999999999 65543 22 6799999 999999999999999999999999999999 88999999999999999
Q ss_pred CCCCCCCCC
Q 005333 669 SPAVDVPPN 677 (701)
Q Consensus 669 nP~ld~p~s 677 (701)
||+||+|++
T Consensus 697 nP~ld~p~~ 705 (746)
T 1tu5_A 697 EPSMDSADS 705 (746)
T ss_dssp SCCCC----
T ss_pred CCcccCCCc
Confidence 999999998
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=5.8e-156 Score=1336.31 Aligned_cols=621 Identities=23% Similarity=0.328 Sum_probs=531.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCceE
Q 005333 9 HPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRRA 88 (701)
Q Consensus 9 HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~p~R~A 88 (701)
-++..||++|++++.+.|.++. .+.+.......|.||.|++||++ +|+|+++|.+++++++ +|+|+|
T Consensus 11 ~vf~dLs~~E~~~V~~~L~~~~-------~l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P~R~A 77 (731)
T 3hi7_A 11 GVFSDLSNQELKAVHSFLWSKK-------ELRLQPSSTTTMAKNTVFLIEML-LPKKYHVLRFLDKGER-----HPVREA 77 (731)
T ss_dssp GGGCCCCHHHHHHHHHHHHTCG-------GGCBCCTTSSCSSSEEEEEEEEE-CCCHHHHHHHHHHCCC-----CCCCEE
T ss_pred CccccCCHHHHHHHHHHHhcCC-------CCCCcccccCCccCCeEEEEEec-CCCchhhhhhhcCCCC-----CCCcce
Confidence 4689999999999999999753 24555556777888998888887 7888888999998875 789999
Q ss_pred EEEEEECCC--CcEEEEEE-eCccccccccCCcccceEEEee-----ecCCCCCCCCHHHHHHHHHHHhc-----ChhHH
Q 005333 89 RLVVYNKRS--NETSIWVV-ELSEVHAATRGGHHRGKVISSK-----VVPDVQPPMDAVEYAECEAVVKD-----FPPFR 155 (701)
Q Consensus 89 ~vv~~~~~~--~~~~e~~V-~L~~~~~~~~~~~~~~~v~~~~-----~~~~~~~p~~~~E~~~~~~~~~~-----~p~~~ 155 (701)
+|+++++.+ ...-|++| +||... .+.... .+|+..+|++.-|+.++.+++++ ...++
T Consensus 78 ~vvi~fG~~~~P~v~Ey~VGPLP~p~----------~~~~l~~~~~~~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (731)
T 3hi7_A 78 RAVIFFGDQEHPNVTEFAVGPLPGPC----------YMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFL 147 (731)
T ss_dssp EEEEEECSSSSCEEEEEEEECSSSCC----------EEEEESCCTTCCCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred EEEEEcCCCCCCeeEEEEEcCCCCCC----------eeeecccCCCCcCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999954 45679999 998521 111111 33445589999899999888886 22333
Q ss_pred HHH-HHc-CCCCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEecccc-----EEEE
Q 005333 156 EAM-KKR-GIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNM-----VVIE 228 (701)
Q Consensus 156 ~a~-~~~-gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~-----~v~~ 228 (701)
+.+ ..+ +|++.|+++.+.-|.|+.++ +|.+ |+.|+|. .+++|+||+ ||+++||++++ +|.+
T Consensus 148 ~~~~~~~~~~~~~cL~~~~~~P~~~~sg-----~r~~-W~~~~~~-----~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~ 215 (731)
T 3hi7_A 148 NTTGFSFQDCHDRCLAFTDVAPRGVASG-----QRRS-WLIIQRY-----VEGYFLHPT-GLELLVDHGSTDAGHWAVEQ 215 (731)
T ss_dssp HHHSCBSSSCSSSBEEEEECSSCSSSTT-----CCEE-EEEEEEC-----STTGGGCEE-EEEEEEECCSSSGGGCEEEE
T ss_pred HHhCceecCCCCCEEeeecCCCCccCCC-----CEEE-ehheecc-----CCCceeecc-ceEEEEecCCCChHHcEEEE
Confidence 333 111 35677888888888887543 3665 9999997 467899999 99999999999 4554
Q ss_pred Ee-----------------cCceecC--CCCCCCC----------CCCCCccCCC-CCCCCCCCCeecCCCCCeEEEcce
Q 005333 229 FE-----------------DRKLVHL--PPADPLR----------NYTAGETRGG-VDRSDIKPLQIVQPEGPSFRVNGH 278 (701)
Q Consensus 229 ~~-----------------~~~~~~~--p~~~~~~----------~y~~~~~~~~-~~r~~lkp~~i~QPeG~sF~V~g~ 278 (701)
|. +|.+..+ +...... .|.....++. .+++++|||+|+||||+||+|+|+
T Consensus 216 v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~ 295 (731)
T 3hi7_A 216 VWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGN 295 (731)
T ss_dssp EEETTEECSSHHHHHHHHHTTCCCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETT
T ss_pred EEECCEecCCHHHHHHHHhCCCeeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCC
Confidence 32 2333222 2111101 1332233332 237899999999999999999999
Q ss_pred eEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCC
Q 005333 279 FVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC 358 (701)
Q Consensus 279 ~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~ 358 (701)
+|+||+|+||||||+||||+||||+|+ | |||+||+|||||+||||||++++++|+|||+| ||+|.+||+|++||
T Consensus 296 ~V~W~~W~F~vgfn~reGlvL~dV~y~----g-r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGc 369 (731)
T 3hi7_A 296 AVLYGGWSFAFRLRSSSGLQVLNVHFG----G-ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGI 369 (731)
T ss_dssp EEEEBTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTT
T ss_pred EEEecCcEEEEecCCCCCcEEEeEEEC----C-eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCC
Confidence 999999999999999999999999998 3 88999999999999999999999999999999 99999999999999
Q ss_pred CCCCCeeEeeeeeecCCCceEEeeceEEeeeecCCc-ccccc--ccCCCc--eeeeeccEEEEEEeeeecccceEEEEEE
Q 005333 359 DCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQ--DWRTGL--AEVRRSRRLSVSFICTVANYEYAFFWHF 433 (701)
Q Consensus 359 DCpg~i~YlD~~~~~~~g~p~~~~naICifE~d~G~-l~rH~--d~~~g~--~~v~r~r~LVvr~i~TVgNYDYi~~~~F 433 (701)
||||+|+|||+++++++|+|++++|||||||+|+|+ +|||+ +|+++. .+++|+|+||||+|+|||||||||+|+|
T Consensus 370 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F 449 (731)
T 3hi7_A 370 DCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIF 449 (731)
T ss_dssp TBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEECSSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEE
T ss_pred CCCCCCEEEeeEEecCCCCEEecCCEEEEEEeeCCeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEE
Confidence 999999999999999999999999999999999998 58996 478763 4789999999999999999999999999
Q ss_pred eccccEEEEEEEEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEeeeccCCCCCCccEEEEEeeeecCCCCCCC
Q 005333 434 YQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNV 513 (701)
Q Consensus 434 ~~dGtIe~~v~aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~~~~np 513 (701)
||||+||+||||||||+++++.++ ..+||++|+|+++|++|||+||||||||||| .+|||++.+++..+. .||
T Consensus 450 ~qdGsIe~eVraTGilst~~~~~~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~--~nP 522 (731)
T 3hi7_A 450 YPNGVMEAKMHATGYVHATFYTPE-GLRHGTRLHTHLIGNIHTHLVHYRVDLDVAG----TKNSFQTLQMKLENI--TNP 522 (731)
T ss_dssp CTTSCEEEEEEEEECCCEEECCGG-GGGSEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--ECT
T ss_pred ecCCeEEEEEEEEEEEeecccCCC-CCCCcceecCCcccccceeEEEEEeccccCC----CCCEEEEEeceecCC--CCC
Confidence 999999999999999999988754 4789999999999999999999999999998 699999999988766 688
Q ss_pred CCcc-----eEEEEEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecCCCCCCCCCCchhhhhhhcccccc
Q 005333 514 HNNA-----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHN 588 (701)
Q Consensus 514 ~~~~-----~~~~~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~l~~~~s~~~~ra~fa~~~ 588 (701)
|+++ ++++++++++|++|++++++.++|+|+|+|+ ++|++|+|+||||+|++.+.+++.++|...+||+||+||
T Consensus 523 ~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~ 601 (731)
T 3hi7_A 523 WSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYP 601 (731)
T ss_dssp TCTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCS
T ss_pred CCCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccc
Confidence 8876 5899999999999999999999999999999 889999999999999876666666899888999999999
Q ss_pred eEEeecCCCCcCCCCCCCCCCCCCC-CChhhhcccCCceeeCCeEEEEeeccccCCCCCCCCCc--ccceeeEEEEeCCC
Q 005333 589 LWVTPYAHDEMYPGGEFPNQNPRVG-EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--PVDRIGFMLMPHGF 665 (701)
Q Consensus 589 lwVT~y~d~E~~asg~y~nq~~~~~-~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pvm--p~~~~~f~L~P~nF 665 (701)
||||||+|+|+||||+|++|+++.+ +||++|+++||+|+|||||||||||+||+||+|||||| |++++||+|||+||
T Consensus 602 lwVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nF 681 (731)
T 3hi7_A 602 LAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNF 681 (731)
T ss_dssp EEEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESS
T ss_pred eEEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCC
Confidence 9999999999999999977776544 68999999999999999999999999999999999999 66999999999999
Q ss_pred CCCCCCCCCCCCC
Q 005333 666 FNCSPAVDVPPNE 678 (701)
Q Consensus 666 Fd~nP~ld~p~s~ 678 (701)
||+||+||++.+.
T Consensus 682 Fd~nPalds~~~v 694 (731)
T 3hi7_A 682 FPEDPSLASRDTV 694 (731)
T ss_dssp SSSCGGGGCTTCE
T ss_pred CCCCccccCcceE
Confidence 9999999999874
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=1.3e-154 Score=1326.42 Aligned_cols=630 Identities=20% Similarity=0.303 Sum_probs=530.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCC
Q 005333 4 RAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKL 83 (701)
Q Consensus 4 ~~~~~HPLdpLs~~Ei~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~l~~~~~~~~~~~~~~ 83 (701)
+++-..++..||++|++++.+.|.+... +.+....-..|.||.|+++|++ +|+|+++|.+|+++++ +
T Consensus 61 ~ap~~~vfadLs~~E~~aV~~~L~~~~~-------l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~ 127 (797)
T 3pgb_A 61 KAPKENVWYGLTDDETADVAKWLFGRPE-------LNLTTTENAGEWDNTIALIELH-RPNKSEAIPYLDGSGP-----A 127 (797)
T ss_dssp CCSSCCSSSCCCHHHHHHHHHHHHTCTT-------TCCCCTTTCCSSSEEEEEEEEE-CCCHHHHHHHHHC--------C
T ss_pred cCCCCCcccccCHHHHHHHHHHHhcCCC-------CCCcccccCCccCCeEEEEEee-CCCHHHHHHhhcCCCC-----C
Confidence 4556799999999999999999998642 3444445677888888888887 7888888889998875 7
Q ss_pred CCceEEEEEEECCC--CcEEEEEE-eCccccc-----ccc-CCc-ccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChh
Q 005333 84 PPRRARLVVYNKRS--NETSIWVV-ELSEVHA-----ATR-GGH-HRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPP 153 (701)
Q Consensus 84 p~R~A~vv~~~~~~--~~~~e~~V-~L~~~~~-----~~~-~~~-~~~~v~~~~~~~~~~~p~~~~E~~~~~~~~~~~p~ 153 (701)
|+|+|+|+++++.+ ...-|++| +||.+.. .+- ++. ..| .++...++++..|+..+.+++++-..
T Consensus 128 P~R~A~vvi~fG~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g------~~~~~~r~~~~~e~~~l~~~~~~~~~ 201 (797)
T 3pgb_A 128 PTRHAHVRLNNRATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQG------QVRNVEPDGETVYSEWLFKISASIAD 201 (797)
T ss_dssp CCCEEEEEEEECSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTT------EEECSCCCTTHHHHTTHHHHHHHTHH
T ss_pred CCeeEEEEEEcCCCCCCceEEEEEcCCCCCCcceeEEccccccCCCCC------CCCcccCcchhhHHHHHHHHHHHHHH
Confidence 89999999999954 35679999 9985311 000 000 002 34556788899999999999987555
Q ss_pred HHHHHHH---cCCCCCCeEEEecccccccCCCCCCCcceeEEEEEEecCCCCCCCCccCCCCCCeEEEEeccccE-----
Q 005333 154 FREAMKK---RGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMV----- 225 (701)
Q Consensus 154 ~~~a~~~---~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~y~~Pi~gl~~~vD~~~~~----- 225 (701)
....+.. .|+.+.++++.+.-|.|+.++ +|. +|++|.|.-.+ ..+++|+||+ ||+++||+++++
T Consensus 202 ~~~~l~~~t~~~~~~~~L~~~~~~P~g~~sg-----~r~-~W~~~~~~~~g-~~d~~~lhP~-gl~~lvDh~~~Dps~W~ 273 (797)
T 3pgb_A 202 ITLDLWNGTALGLENDTLDIWGIDPLWQDDG-----RII-RWDMFWNMADD-EFDSETLLPL-GLYLKSDVTGRDPSQWK 273 (797)
T ss_dssp HHHHHHSCCCSSSTTCCEEEEECSSCBCSTT-----CCE-EEEEEEECCCT-TCCCGGGCEE-EEEEEEECCSSCGGGCE
T ss_pred HHHHHhhcccccCCCCeEeeeccCCCCcCCC-----CEE-EeeeeeccCCC-ccccceeecc-ceEEEEecCCCChhHcE
Confidence 5444443 355556788888778886543 355 59999997321 2356999999 899999999884
Q ss_pred EEEEe-----------------cCceecCCCCCCCCCCCCCccCCC-CCCCCCCCCeecCCCCCeEEEc--ceeEeeece
Q 005333 226 VIEFE-----------------DRKLVHLPPADPLRNYTAGETRGG-VDRSDIKPLQIVQPEGPSFRVN--GHFVEWQKW 285 (701)
Q Consensus 226 v~~~~-----------------~~~~~~~p~~~~~~~y~~~~~~~~-~~r~~lkp~~i~QPeG~sF~V~--g~~V~W~~W 285 (701)
|.+|. ++.+..+.+.. ...|.....++. .+|+++|||+|+||||+||+|+ ||+|+||||
T Consensus 274 v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~~-~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~~W 352 (797)
T 3pgb_A 274 LLGWMYNDIFYETTEEFRKAYWSPGFVKLKPNV-DGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDF 352 (797)
T ss_dssp EEEEEETTEEESSHHHHHHHHTSTTCCCCCCCC-CCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEETTE
T ss_pred EEEEEECCEecCCHHHHHHHHhCCCeeecCCCC-CCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeCCc
Confidence 44421 23333332111 123432222322 2488999999999999999997 799999999
Q ss_pred EEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCee
Q 005333 286 NFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIK 365 (701)
Q Consensus 286 ~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~ 365 (701)
+||||||+||||+||||+|+ | ||||||+|||||+|||||+ +|++++++||+||||+|.+||+|++||||||+|+
T Consensus 353 ~F~vgfn~ReGlvL~dV~y~----g-r~V~YrlSlsEm~VPYg~~-~P~~~~~af~D~eyG~G~~an~L~lGcDCpg~i~ 426 (797)
T 3pgb_A 353 SFYIAFNRDTGLSLFDIKYK----G-QRVLYELGLQEALAHYAAN-DPVQSSVAYLDSYYGFGPYAFELLKGYDCPSYAS 426 (797)
T ss_dssp EEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCS-SHHHHHCEEEGGGTCSGGGCCCCCBTTTBCTTCE
T ss_pred EEEEecCCCCceEEEccccC----C-eeEEEEeEeeeeEEeCCCC-ChhhhcceeeecccCCccccccCccCCCCCCCCE
Confidence 99999999999999999997 3 8899999999999999996 5889999999999999999999999999999999
Q ss_pred EeeeeeecCCCceEEeeceEEeeeecCCc-cccccccCCCceeeeeccEEEEEEeeeecccceEEEEEEeccccEEEEEE
Q 005333 366 YFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVK 444 (701)
Q Consensus 366 YlD~~~~~~~g~p~~~~naICifE~d~G~-l~rH~d~~~g~~~v~r~r~LVvr~i~TVgNYDYi~~~~F~~dGtIe~~v~ 444 (701)
|||++++++ |+|++++|||||||+|+|+ +|||+|+ +.++++|+|+||||+|+|||||||||+|+|||||+||+|||
T Consensus 427 YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~--~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVr 503 (797)
T 3pgb_A 427 YLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS--EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGVEVR 503 (797)
T ss_dssp EEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS--SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEE
T ss_pred EeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC--CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEEEEEE
Confidence 999999987 7899999999999999997 8999985 67899999999999999999999999999999999999999
Q ss_pred EEEEEEeeeeCCCCcCCccceecCCCccccceeeEEEEEeeeccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEE
Q 005333 445 LTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAE 521 (701)
Q Consensus 445 aTG~l~t~~~~~~~~~~yGt~V~~~~~g~~HqH~f~~RlD~dVdG~~~g~~Nsv~~~~~~~~~~---~~~np~~~~~~~~ 521 (701)
|||||+++.+. + ..+|||+|+|+++|++|||+||||||||||| .+|||+++++++++. +..+|++++|+++
T Consensus 504 aTGiLst~~~~-~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~~~ 577 (797)
T 3pgb_A 504 ASGYIQSAYYA-N-NQDFGYQIHDSLSGSMHDHVLNFKADFDILG----PNNTIELVSVVPVTKQFSWSGNKTRNTMQLG 577 (797)
T ss_dssp EEECCCCEECT-T-CGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEECTTTTTCEEEEEEEE
T ss_pred EEEEEEecccC-C-CCCccceecCCccccccceEEEEeeccCCCC----CCCeEEEEeeEEccCCCCCCCCcccceeEEE
Confidence 99999999653 4 5789999999999999999999999999998 699999999987643 2233567889999
Q ss_pred EEEEehHHhhhhccCCCCCeEEEEecCCCcCCCCCceeEEEecCCCCCCCCCCchh-hhhhhcccccceEEeecCCCCcC
Q 005333 522 EELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYAHDEMY 600 (701)
Q Consensus 522 ~t~~~~e~~a~~~~~~~~~r~~~i~N~~~~N~~G~p~gYrl~p~~~~~~l~~~~s~-~~~ra~fa~~~lwVT~y~d~E~~ 600 (701)
++++++|.||+++++++++|+|+|+|++++|++|+|+||||+|++++++|+.++|. ..+||+||+||||||||+|+|+|
T Consensus 578 ~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E~~ 657 (797)
T 3pgb_A 578 RSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPT 657 (797)
T ss_dssp EEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTCCC
T ss_pred EEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCccC
Confidence 99999999999999999999999999999999999999999999888888877776 56899999999999999999999
Q ss_pred CCCCCCCCCCCCC-CChhhhcccCCceeeCCeEEEEeeccccCCCCCCCCC--cccceeeEEEEeCCCCCCCCCCCCCCC
Q 005333 601 PGGEFPNQNPRVG-EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPV--MPVDRIGFMLMPHGFFNCSPAVDVPPN 677 (701)
Q Consensus 601 asg~y~nq~~~~~-~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pv--mp~~~~~f~L~P~nFFd~nP~ld~p~s 677 (701)
|||+|++|+++.+ .+|.+|+ +||+|+|||||||||||+||+||+||||| ||++++||+|||+||||+||+||+|.+
T Consensus 658 aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~~~ 736 (797)
T 3pgb_A 658 SAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETVNM 736 (797)
T ss_dssp SCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCSCE
T ss_pred CCCCCcccCCCCCccchhhhc-CCCccccCceEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCccc
Confidence 9999999998644 6789999 99999999999999999999999999999 999999999999999999999999976
No 10
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=10.98 E-value=4.6e+02 Score=24.26 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=45.9
Q ss_pred CCCCeecCCCCCeEEEcceeEeeeceEEEEEecCCcceEEEEEEEecCCCCceeEEEEeeeeeEEeecCCCCCccccc
Q 005333 260 IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRK 337 (701)
Q Consensus 260 lkp~~i~QPeG~sF~V~g~~V~W~~W~F~~gf~~reGl~L~dV~f~d~g~g~R~I~Yrlsl~Em~vpY~dp~~p~~~k 337 (701)
+|-...+=+||..|+| +-+|+|.-+.=.||...++.++- | -+| -...+|+--|+....++...
T Consensus 34 ~k~~~f~iKEG~~Y~i--------ki~F~V~~eivsGLkY~q~v~r~---G-i~V---dk~~~mlGsy~P~~e~y~~~ 96 (141)
T 1kmt_A 34 FKKQSFVLKEGVEYRI--------KISFRVNREIVSGMKYIQHTYRK---G-VKI---DKTDYMVGSYGPRAAAYEFL 96 (141)
T ss_dssp GGGCCEEEETTCEEEE--------EEEEEECSSCEEEEEEEEEEEET---T-EEE---EEEEEEEEEECCCSSCEEEE
T ss_pred hccCceEccCCcEEEE--------EEEEEEccccccCcEEEEEEEEC---C-EEE---CcceEeeeccCCCCCcceec
Confidence 3334444578888887 67799999999999999999983 4 334 45679999999756664433
Done!