BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005334
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 254/655 (38%), Positives = 351/655 (53%), Gaps = 59/655 (9%)
Query: 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYE 126
TTR+ +FLG T+ S+V+S ++VGVLDTG+WPE SFDD G P P WKG
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 127 E---------------AVGPIDETAESKSPRXXXXXXXXXXXXXXXXVVNGASLFGFASG 171
+G + PR +V+ A+L+G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 172 TARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGG-LTDYYRDTVA 230
TARG AR+A YKVCW GC +DILA D AI DGV+++S+S+GG Y+ D +A
Sbjct: 119 TARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIA 178
Query: 231 IGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSG 290
IG+F A+ +GI S SAGNGGP + ++++PW+ +V A T+DR F T V +GNG+SF G
Sbjct: 179 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238
Query: 291 VSLYSRRPLSGSMVPIVDAANVSST----SSGNLCMTGSLIPAKVAGKIVVCDRG-GNSR 345
VS+ + P+V ++ +T S+ C S+ P + GKIVVC+ G
Sbjct: 239 VSINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHE 295
Query: 346 VEKGVEVKDAGGVGMILT-NTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMA 404
K ++ G G+++T NT Y AD+ LPS+ + A YI S P A
Sbjct: 296 FFKSLD----GAAGVLMTSNTRDY-----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGA 346
Query: 405 TIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESD 464
TI T L +PVV +FSSRGPN T +++KPD+ PGV ILA W +V P G
Sbjct: 347 TIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVG--GI 402
Query: 465 KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDIS 524
+R+ FNIISGTSMSCPH++G+A +K +P WSP+AIKSALMTTA N +
Sbjct: 403 RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN---------A 453
Query: 525 TGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLS 584
P F +G+GHV+P+ A+ PGLVYDA DY+ FLC Y++ +++ T AC S
Sbjct: 454 RFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTS 513
Query: 585 SKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSV 644
T + D+NYPSF + + T + RTLT+V + ++ S +
Sbjct: 514 GNTGRVWDLNYPSFGLSVSPSQ--------TFNQYFNRTLTSVAPQASTYRAMISAPQGL 565
Query: 645 KILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFS 699
I V P LSF+ ++KS+ +T S G A L WSDG H V SPI +
Sbjct: 566 TISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 348 bits (894), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 244/669 (36%), Positives = 347/669 (51%), Gaps = 62/669 (9%)
Query: 67 TTRTPEFLGLGKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGV--- 123
TT T +FL L S L+P S + +VIV VLD+G+WPE SF D GM +P+ WKG+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 124 -----------------WYEEAVGPIDETAE--SKSPRXXXXXXXXXXXXXXXXVVNGAS 164
++ + + D T S R G S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 165 LFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY 224
FG+A GTARG+A +AR+A YK + G F SD++A MD+A+ DGV+++S+S G
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 225 YRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGN 284
Y D ++I +F AM +G+ VS SAGN GP S++N +PWI V +G DR F ++LGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 285 GKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN- 343
G G SL+ R P++ +S SS L ++ P IV+CD G+
Sbjct: 241 GLKIRGWSLFPARAFVRDS-PVIYNKTLSDCSSEEL-LSQVENPENT---IVICDDNGDF 295
Query: 344 ---------SRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394
+R++ + + + GV T + P V +K G + N
Sbjct: 296 SDQMRIITRARLKAAIFISEDPGVFRSATFPN-------------PGVVVNKKEGKQVIN 342
Query: 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTG 454
Y+ + P ATI + T L +P+PVVAA S+RGP+ I KPD++APGV ILA +
Sbjct: 343 YVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402
Query: 455 AVGPTGLESD-KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513
V T + ++ + + SGTSM+ PH +G+AA+LKAAHPEWSPSAI+SA+MTTA
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462
Query: 514 NGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIK 573
+ K + D + +TP D GAGHVDP ALDPGLVYDAT QDY++ LC+L+++ Q K
Sbjct: 463 DNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFK 522
Query: 574 QATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGT-PTT 632
R A + S D+NYPSF + + G + + K+ RT+TNVG T
Sbjct: 523 TIA-RSSASHNCSNPS-ADLNYPSF-IALYSIEGNFTLLEQ----KFKRTVTNVGKGAAT 575
Query: 633 YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQW--SDGKH 690
Y + + S I V P+ L F + EK+SY +T + + + W +G H
Sbjct: 576 YKAKLKAPKNST-ISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNH 634
Query: 691 VVGSPIAFS 699
V SPI S
Sbjct: 635 SVRSPIVTS 643
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTG 454
Y P + +I+ G + V+ FSSRGP LKP+++APG W
Sbjct: 286 YTVGSPAAASKVITVGA---VDKYDVITDFSSRGPT--ADNRLKPEVVAPG-----NWII 335
Query: 455 AVGPTGLESDK-RHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513
A +G + + + GT+M+ PHV+G+AALL AHP W+P +K+AL+ TA
Sbjct: 336 AARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETA--- 392
Query: 514 NGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544
DI +GAG V+ A
Sbjct: 393 --------DIVKPDEIADIAYGAGRVNAYKA 415
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 169 ASGTARGMAAQARVATYKVCWLAGCFG-SDILAGMDKAIED----GVNVMSMSIGGGLTD 223
++G +GMA A++ KV G SDI+ G+D A+++ G+ V+++S+G +
Sbjct: 195 SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS 254
Query: 224 YYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDR 274
D+++ A G+ V +AGN GP ++ + A + G +D+
Sbjct: 255 DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 99/422 (23%), Positives = 162/422 (38%), Gaps = 72/422 (17%)
Query: 161 NGASLFGFASGTA----------RGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGV 210
+G + G SG A G +A++ +V + G +D +AI D V
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGL--ADYARNYAQAIRDAV 154
Query: 211 N----VMSMSIGGGLTDYYR--DTVAIGAFTAMAQGIFVSCSAGN----GGPYANSISNV 260
N V++MS G Y D A ++G+ + SAGN GG +++
Sbjct: 155 NLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLAD- 213
Query: 261 APWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNL 320
P VG + T S K + + +P++ + +
Sbjct: 214 HPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPNKAYDY 273
Query: 321 CMTGSLIP----AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL-VAD 375
+ V GKI + +RG +K K AG VG+++ + G + + +
Sbjct: 274 AYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPN 333
Query: 376 AQLLPSANVGEKAG----DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNP 431
+P+A + K G D K I+ + P + T+L + FSS G
Sbjct: 334 VDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKL--------SRFSSWG--- 382
Query: 432 ITPE-ILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
+T + +KPD+ APG +IL+ + +SGTSMS P V+G+ LL
Sbjct: 383 LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLL 429
Query: 491 KA----AHPEWSPSA----IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPV 542
+ +P+ +PS K LM++A + L D +P GAG VD
Sbjct: 430 QKQYETQYPDMTPSERLDLAKKVLMSSATA-------LYDEDEKAYFSPRQQGAGAVDAK 482
Query: 543 AA 544
A
Sbjct: 483 KA 484
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A FSS GP + D++APGV+I + G + +SGTSM+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTSMASP 216
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G AAL+ + HP W+ + ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 159 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN---- 203
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 204 ---------KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 13/71 (18%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G+AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTA 510
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 159 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN---- 203
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGTSM+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 204 ---------KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I++ G
Sbjct: 159 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIVSTLPGN---- 203
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGT+M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 204 ---------KYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I++ G
Sbjct: 159 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIVSTLPGN---- 203
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGT+M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 204 ---------KYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A FSS GP + D++APGV+I + G + +SGT+M+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTAMASP 216
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G AAL+ + HP W+ + ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 159 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN---- 203
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 204 ---------KYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN---- 212
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 213 ---------KYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I W+
Sbjct: 156 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSI---WST----- 196
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
L +K + SGT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 197 -LPGNK----YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN---- 212
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
+ SGT M+ PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 213 ---------KYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 500 SAIKSALMTTAYS 512
I++ L TA S
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAKSGTSMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 443 APGVNILAGWTGAVGPTGLESDKRHV------SFNIISGTSMSCPHVSGLAALLKAAHPE 496
APGV IL+ G G E +V +++ GTSM+ PHV+G+ A+L P
Sbjct: 342 APGVTILSTVPGE-DSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPN 400
Query: 497 WSPSAIKSALMTTAYSTNGNG 517
P I+ L TA+ NGNG
Sbjct: 401 AKPWQIRKLLENTAFDFNGNG 421
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 24/110 (21%)
Query: 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT 459
PG ++I+ G + S A+FSS GP + D++APGV+I + G
Sbjct: 168 PGKYPSVIAVGA---VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPG----- 211
Query: 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509
++ ++N GTS + PHV+G AAL+ + HP W+ + ++S+L T
Sbjct: 212 -----NKYGAYN---GTSXASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS GP + D++APGV+I + G + SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTT 509
HV+G AAL+ + HP W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ APG +I + W + T N ISGTSM+ PHV+G+AAL +P SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 500 SAIKSALMTTAYSTNGNGKTLLDISTGQPS 529
+ + + L T A + + D TG P+
Sbjct: 247 AQVTNLLKTRATA-----DKVTDAKTGSPN 271
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS G + D++APGV+I + G ++ +GTSM+ P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQSTLPGG-------------TYGAYNGTSMATP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G AAL+ + HP W+ + ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 463 SDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
S++ + + +GTSM+ PHVSG+A L+ + HPE S S +++AL TA
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 400 PGPMATIISRGTQLGIQPSPV--VAAFSSRGPNPITPEIL----KPDLIAPGVNILAGWT 453
PG + I+ +Q + VA +SSRG + + ++ APG ++ + W
Sbjct: 180 PGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW- 238
Query: 454 GAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513
+ +N ISGTSM+ PHVSGLAA + A +P S + ++S L A S
Sbjct: 239 ------------YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
Query: 514 N 514
+
Sbjct: 287 D 287
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 29/157 (18%)
Query: 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRG--TQLGIQPSPVVAAF 424
SY + + D A V AG+ +N ++ P ++S G T GI+ A+F
Sbjct: 183 SYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASF 237
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVS--FNIISGTSMSCPH 482
S+ G + DL APG +IL+ T +R VS ++ ++GTSM+ PH
Sbjct: 238 SNYG--------VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPH 281
Query: 483 VSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNG 515
VSG+AAL+ +A + +P+ +K L++T NG
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG 318
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 29/157 (18%)
Query: 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRG--TQLGIQPSPVVAAF 424
SY + + D A V AG+ +N ++ P ++S G T GI+ A+F
Sbjct: 183 SYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASF 237
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVS--FNIISGTSMSCPH 482
S+ G + DL APG +IL+ T +R VS ++ ++GTSM+ PH
Sbjct: 238 SNYG--------VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPH 281
Query: 483 VSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNG 515
VSG+AAL+ +A + +P+ +K L++T NG
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG 318
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGV+I + G ++ +GT M+ PHV+G AAL+ + HP W+
Sbjct: 197 DVMAPGVSIQSTLPGG-------------TYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 500 SAIKSALMTTA 510
+ ++ L +TA
Sbjct: 244 AQVRDRLESTA 254
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 29/157 (18%)
Query: 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRG--TQLGIQPSPVVAAF 424
SY + + D A V AG+ +N ++ P ++S G T GI+ A+F
Sbjct: 183 SYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASF 237
Query: 425 SSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVS--FNIISGTSMSCPH 482
S+ G + DL APG +IL+ T +R VS ++ ++GTSM+ PH
Sbjct: 238 SNYG--------VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPH 281
Query: 483 VSGLAALLKAA----HPEWSPSAIKSALMTTAYSTNG 515
VSG+AAL+ +A + +P+ +K L++T NG
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG 318
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
DL APG +I + W SD + N GTSM+ PHV+G+AAL +P +P
Sbjct: 196 DLFAPGASIPSAW--------YTSDTATQTLN---GTSMATPHVAGVAALYLEQNPSATP 244
Query: 500 SAIKSALMTTA 510
+++ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 400 PGPMATIISRGTQLGIQPSPV--VAAFSSRGPNPITPEIL----KPDLIAPGVNILAGWT 453
PG + I+ +Q + VA +SSRG + + ++ APG ++ + W
Sbjct: 180 PGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW- 238
Query: 454 GAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513
+ +N ISGT M+ PHVSGLAA + A +P S + ++S L A S
Sbjct: 239 ------------YNGGYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
Query: 514 N 514
+
Sbjct: 287 D 287
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS G + D++APGV+I + G ++ +GT M+ P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQSTLPGG-------------TYGAYNGTCMATP 225
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G AAL+ + HP W+ + ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GTSM+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 398 SDPGPMATIISRGTQLGIQPS--------PVVAAFSSRGPNPITPEILKPDLIAPGVNIL 449
S PG I+ G ++PS VA FSSRGP +KPD++APG IL
Sbjct: 171 SAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFIL 228
Query: 450 AGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEW-----SPSAIKS 504
+ + ++ P + + GTSM+ P V+G A L+ + PS +K+
Sbjct: 229 SARS-SLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKA 287
Query: 505 ALMTTAYST-----NGN---GKTLLDIS 524
AL+ A NGN G+ LD S
Sbjct: 288 ALIAGAADIGLGYPNGNQGWGRVTLDKS 315
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 469 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
++ ++GT M+ PHV+G AAL+ + HP S S +++ L +TA
Sbjct: 212 TYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D++APGV+I++ TG + +SGTSM+ PHV+GLAALL A +
Sbjct: 202 DVVAPGVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALL--ASQGRNN 246
Query: 500 SAIKSALMTTAYSTNGNG 517
I+ A+ TA +G G
Sbjct: 247 IEIRQAIEQTADKISGTG 264
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
D+ APG NIL+ W G + N ISGTSM+ PH+ GL A L
Sbjct: 203 DIFAPGSNILSTWIGG-------------TTNTISGTSMATPHIVGLGAYL 240
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 21/89 (23%)
Query: 422 AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481
A+FSS G + +++APGV++ + + P+ ++ ++GTSM+ P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTY-----PSN--------TYTSLNGTSMASP 224
Query: 482 HVSGLAALLKAAHPEWSPSAIKSALMTTA 510
HV+G AAL+ + +P S S +++ L +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 247
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 135 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 189
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 190 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 233
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 250 PHVSGVVALIQAAY 263
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 137 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 191
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 192 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 235
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 215 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 269
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 270 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 313
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 500 SAIK 503
SA +
Sbjct: 247 SACR 250
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 215 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 269
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 270 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 313
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG A D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 215 GDGIIAGDPDA--DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 269
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 270 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 313
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 196 SDILAGMDKAI--EDGV------------------NVMSMSIGGGLTDYYRDTVAIGAFT 235
SDI G+++AI DGV V+SMS+GG D Y + I A+
Sbjct: 194 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSYLYDMIIQAYN 253
Query: 236 AMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295
A GI + ++GN G + S P + VGA + N ++ + S GV + S
Sbjct: 254 A---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 310
Query: 296 RRP 298
P
Sbjct: 311 TYP 313
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 146 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 200
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 201 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 244
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 325 PHVSGVVALIQAAY 338
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 212 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 266
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 267 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 310
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 146 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 200
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 201 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 244
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 421 VAAFSSRGPNPITPE--ILKPD--LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476
VA FSSRG + I K D + APG + + W + ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG-------------GYATISGT 248
Query: 477 SMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
SM+ PH +GLAA + A P S ++ L T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
D+ APG +I + W G G T N ISGTSM+ PH++GLAA L
Sbjct: 201 DIFAPGTSITSTWIG--GRT-----------NTISGTSMATPHIAGLAAYL 238
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 441 LIAPGVNILAGW-TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAH----P 495
L APG NIL+ G GP S+ + +GTSM+ PHVSG+AAL+ +A
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISAANSIGK 299
Query: 496 EWSPSAIKSALMTTAYSTNG 515
+PS + L+ T NG
Sbjct: 300 TLTPSELSDILVRTTSRFNG 319
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTXMAT 247
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 135 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 189
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 190 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 233
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 421 VAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480
+A+FS+R +P++ APGV+IL+ + S+ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTCMAT 247
Query: 481 PHVSGLAALLKAAH 494
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 195 GSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA 254
G I+AG +D V+SMS+GG D Y + I A+ A GI + ++GN G +
Sbjct: 135 GDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPS 189
Query: 255 NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP 298
S P + VGA + N ++ + S GV + S P
Sbjct: 190 PSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYP 233
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTSILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 500 SAIK 503
SA +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTSILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 500 SAIK 503
SA +
Sbjct: 247 SACR 250
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 441 LIAPGVNILAGW-TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAH----P 495
L APG NIL+ G GP S+ + +GTSM+ PHVSG+AAL+ +A
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISAANSIGK 299
Query: 496 EWSPSAIKSALMTTAYSTNG 515
+PS + L+ T NG
Sbjct: 300 TLTPSELSDILVRTTSRFNG 319
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 31/221 (14%)
Query: 331 VAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL-VADAQLLPSANVGEKAG 389
V GKI + +RG +K + K AG VG+++ + G + + + P+A + K G
Sbjct: 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG 338
Query: 390 ----DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPE-ILKPDLIAP 444
D + I+ + P + GT+L + FSS G +T + +KPD+ AP
Sbjct: 339 LLLKDNPQKTITFNATPKVLPTASGTKL--------SRFSSWG---LTADGNIKPDIAAP 387
Query: 445 GVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKS 504
G +IL+ + +SGTS S P V+G+ LL+ + P S
Sbjct: 388 GQDILSSVANN-------------KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS 434
Query: 505 ALMTTAYSTNGNGKT-LLDISTGQPSTPFDFGAGHVDPVAA 544
+ A + T L D +P GAG VD A
Sbjct: 435 ERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 398 SDPGPMATIISRGTQLGIQPS--------PVVAAFSSRGPNPITPEILKPDLIAPGVNIL 449
S PG I+ G ++PS VA FSSRGP +KPD++APG IL
Sbjct: 171 SAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFIL 228
Query: 450 AGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEW-----SPSAIKS 504
+ + ++ P + GTS + P V+G A L+ + PS +K+
Sbjct: 229 SARS-SLAPDSSFWANHDSKYAYXGGTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKA 287
Query: 505 ALMTTAYST-----NGN---GKTLLDIS 524
AL+ A NGN G+ LD S
Sbjct: 288 ALIAGAADIGLGYPNGNQGWGRVTLDKS 315
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 499
DL APG I + W + ISGTSM+ PHV+G+AAL + +P
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 500 SAIKSALMTTA 510
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 471 NIISGTSMSCPHVSGLAAL----LKAAHPEWSPSAIKSALMTTA 510
+ +GTS + PHV+G AL LK + E+SP +IK A+ TA
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA 499
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNG 517
+SGTSM+ PHV+G+A LL A S S I++A+ TA +G G
Sbjct: 221 LSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG 263
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNG 517
+SGTSM+ PHV+G+A LL A S S I++A+ TA +G G
Sbjct: 221 LSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG 263
>pdb|2WMI|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen
Length = 606
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 493 AHPEWSPSAI---KSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGL 549
AHP S S + + YS GNGK ++++T + TP + G + + A+ PG+
Sbjct: 342 AHPAPSKSKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPL-YMTGRYNVIPAI-PGV 399
Query: 550 VYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYP 596
+ +++ ++ S QIK+ T+ +F+ ++ L + YP
Sbjct: 400 LKTDKLKE------SVSSSRIQIKEITSPEFSSTQARKEYLNKL-YP 439
>pdb|2WMK|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen.
pdb|2WMK|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen
Length = 606
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 493 AHPEWSPSAIK-----SALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDP 547
AHP +PS K + YS GNGK ++++T + TP + G + + A+ P
Sbjct: 342 AHP--APSKEKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPL-YMTGRYNVIPAI-P 397
Query: 548 GLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYP 596
G++ +++ ++ S QIK+ T+ +F+ ++ L + YP
Sbjct: 398 GVLKTDKLKE------SVSSSRIQIKEITSPEFSSTQARKEYLNKL-YP 439
>pdb|2WMI|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen.
pdb|2WMJ|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen.
pdb|2WMJ|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen
Length = 606
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 493 AHPEWSPSAIK-----SALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDP 547
AHP +PS K + YS GNGK ++++T + TP + G + + A+ P
Sbjct: 342 AHP--APSKEKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPL-YMTGRYNVIPAI-P 397
Query: 548 GLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYP 596
G++ +++ ++ S QIK+ T+ +F+ ++ L + YP
Sbjct: 398 GVLKTDKLKE------SVSSSRIQIKEITSPEFSSTQARKEYLNKL-YP 439
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 483 VSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPS-TPFDFGAGHVDP 541
V+ + LL ++ + M + G G +D + S T F G+G V
Sbjct: 76 VAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYA 135
Query: 542 VAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVN 594
+D G YD V++ A D + I QAT RD YS G VN
Sbjct: 136 YGVMDRGYSYDLKVEE------AYDLARRAIYQATYRD-------AYSGGAVN 175
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
D++APGV G++S + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGV-------------GIKSTYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 297 RPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAG 356
RPL + IV V + S+G + +TGS G+++ GN R+ + EVK
Sbjct: 4 RPLHDRV--IVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAV---GNGRILENGEVKPLD 58
Query: 357 -GVGMILTNTDSYG 369
VG I+ D YG
Sbjct: 59 VKVGDIVIFNDGYG 72
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL-----KAAH 494
D++APGV G++S + +SGT+M+ PHV+G AL+ A
Sbjct: 226 DIVAPGV-------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 495 PEWSPSAIKSALMTTA------YSTNGNGKTLLDI 523
S + I + L+ A GNG LD+
Sbjct: 273 RSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDL 307
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL-----KAAH 494
D++APGV G++S + +SGT+M+ PHV+G AL+ A
Sbjct: 226 DIVAPGV-------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 495 PEWSPSAIKSALMTTA------YSTNGNGKTLLDI 523
S + I + L+ A GNG LD+
Sbjct: 273 RSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDL 307
>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
Length = 297
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 497 WSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQ 556
WSP SA M T++ NG+G+ L+D P D PG YDA Q
Sbjct: 188 WSPC---SAYMITSFLDNGHGECLMDKPQNPIQLPGDL------------PGTSYDANRQ 232
Query: 557 DYLDF 561
F
Sbjct: 233 CQFTF 237
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALL 490
D++APGV G++S + +SGT+M+ PHV+G AL+
Sbjct: 208 DIVAPGV-------------GIKSTYLDSGYAELSGTAMAAPHVAGALALI 245
>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
Length = 300
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 497 WSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQ 556
WSP SA M T++ NG+G+ L+D P D PG YDA Q
Sbjct: 191 WSPC---SAYMITSFLDNGHGECLMDKPQNPIQLPGDL------------PGTSYDANRQ 235
Query: 557 DYLDF 561
F
Sbjct: 236 CQFTF 240
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 473 ISGTSMSCPHVSGLAALL------KAAHPEWSPSAIKSALMTTAYSTN 514
+SGTS + P VSG+AALL + P+ P +K+AL+ +A N
Sbjct: 220 LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASATPCN 265
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 510
+++GTS + P SG ALL +A+P+ S ++ L +A
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSA 369
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 654 SFSRQYEKKSYVVTFTASSMPSGTTSF---ARLQWSDGKHVVGSPIA 697
+FSR+++KK + A +G+ F A W DGKHVV +A
Sbjct: 91 NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVA 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,085,167
Number of Sequences: 62578
Number of extensions: 900809
Number of successful extensions: 1895
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 156
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)