Query 005334
Match_columns 701
No_of_seqs 438 out of 2709
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.7E-50 3.7E-55 429.1 28.4 281 63-511 1-307 (307)
2 cd05562 Peptidases_S53_like Pe 100.0 9.2E-49 2E-53 406.8 24.7 270 86-546 1-274 (275)
3 PTZ00262 subtilisin-like prote 100.0 5.7E-49 1.2E-53 434.1 24.1 293 72-551 294-618 (639)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 2.9E-48 6.2E-53 400.0 26.4 243 83-514 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 6.2E-48 1.4E-52 406.4 25.0 283 89-510 1-311 (311)
6 cd07478 Peptidases_S8_CspA-lik 100.0 4.1E-46 9E-51 411.9 28.5 402 87-537 1-455 (455)
7 cd07489 Peptidases_S8_5 Peptid 100.0 4.7E-46 1E-50 396.2 27.5 292 80-549 3-301 (312)
8 cd07475 Peptidases_S8_C5a_Pept 100.0 5.7E-46 1.2E-50 401.6 28.2 300 82-546 2-346 (346)
9 cd07476 Peptidases_S8_thiazoli 100.0 5E-46 1.1E-50 385.2 25.4 246 82-515 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.1E-44 2.5E-49 382.9 29.9 283 89-544 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 6E-45 1.3E-49 372.0 23.4 234 92-537 1-239 (239)
12 cd07481 Peptidases_S8_Bacillop 100.0 2.3E-44 4.9E-49 374.1 25.5 247 89-511 1-264 (264)
13 cd04857 Peptidases_S8_Tripepti 100.0 5.1E-44 1.1E-48 383.5 27.5 220 142-513 182-412 (412)
14 cd07483 Peptidases_S8_Subtilis 100.0 1.2E-43 2.6E-48 373.0 24.6 251 90-511 1-291 (291)
15 cd07485 Peptidases_S8_Fervidol 100.0 2.3E-43 5.1E-48 368.3 25.8 261 82-509 2-273 (273)
16 cd07493 Peptidases_S8_9 Peptid 100.0 2E-43 4.4E-48 366.5 24.6 242 91-511 1-261 (261)
17 cd07487 Peptidases_S8_1 Peptid 100.0 5E-43 1.1E-47 364.3 27.4 256 89-511 1-264 (264)
18 cd04847 Peptidases_S8_Subtilis 100.0 2.5E-42 5.5E-47 363.9 21.9 262 93-511 2-291 (291)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 8.6E-42 1.9E-46 353.1 24.2 232 82-512 17-255 (255)
20 cd07494 Peptidases_S8_10 Pepti 100.0 6.7E-42 1.5E-46 359.7 23.6 252 79-515 10-287 (298)
21 cd07484 Peptidases_S8_Thermita 100.0 1.8E-41 3.8E-46 351.9 25.8 241 79-513 18-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.9E-41 8.5E-46 348.1 26.2 253 91-511 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 5.7E-41 1.2E-45 352.5 26.6 256 91-509 1-285 (285)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 3.4E-41 7.4E-46 356.0 24.9 277 85-511 2-293 (293)
25 cd07498 Peptidases_S8_15 Pepti 100.0 6.5E-41 1.4E-45 343.9 24.1 239 92-509 1-242 (242)
26 cd07480 Peptidases_S8_12 Pepti 100.0 1.4E-40 3E-45 351.5 25.0 264 84-542 2-296 (297)
27 cd07473 Peptidases_S8_Subtilis 100.0 2.9E-40 6.3E-45 342.6 25.9 246 90-511 2-259 (259)
28 cd04843 Peptidases_S8_11 Pepti 100.0 7.4E-41 1.6E-45 347.9 21.0 244 80-511 5-277 (277)
29 cd07477 Peptidases_S8_Subtilis 100.0 1.4E-39 3.1E-44 331.0 25.2 225 91-509 1-229 (229)
30 PF00082 Peptidase_S8: Subtila 100.0 2E-40 4.3E-45 348.0 16.9 272 93-546 1-282 (282)
31 KOG1153 Subtilisin-related pro 100.0 2.6E-40 5.6E-45 341.0 15.9 282 31-511 144-461 (501)
32 cd07482 Peptidases_S8_Lantibio 100.0 2.9E-39 6.3E-44 341.4 23.8 149 91-254 1-159 (294)
33 cd07491 Peptidases_S8_7 Peptid 100.0 2E-39 4.3E-44 331.8 20.6 155 89-270 2-169 (247)
34 cd04059 Peptidases_S8_Protein_ 100.0 4E-39 8.7E-44 340.8 19.6 248 79-511 28-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 2.2E-38 4.8E-43 320.8 24.1 221 91-511 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 5.6E-38 1.2E-42 326.4 22.9 242 88-511 1-267 (267)
37 KOG1114 Tripeptidyl peptidase 100.0 1.2E-35 2.6E-40 326.6 24.2 237 145-546 310-557 (1304)
38 KOG4266 Subtilisin kexin isozy 100.0 1.1E-34 2.5E-39 306.4 24.4 337 7-546 64-465 (1033)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1E-32 2.2E-37 281.5 16.6 194 140-510 32-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.6E-31 1.4E-35 267.7 24.8 234 92-509 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 4.7E-23 1E-27 232.7 23.3 248 80-512 130-398 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 1.1E-17 2.4E-22 181.2 13.9 101 172-275 82-199 (361)
43 KOG3526 Subtilisin-like propro 99.7 1.3E-18 2.8E-23 176.0 5.8 152 80-253 151-316 (629)
44 cd02120 PA_subtilisin_like PA_ 99.4 2.5E-12 5.5E-17 118.1 13.1 123 280-405 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.9E-11 4.1E-16 114.7 11.8 117 301-431 25-142 (143)
46 cd04816 PA_SaNapH_like PA_SaNa 98.7 3E-07 6.4E-12 83.8 12.5 97 303-403 18-119 (122)
47 PF02225 PA: PA domain; Inter 98.7 3.9E-08 8.4E-13 86.3 6.3 79 318-396 19-101 (101)
48 cd04818 PA_subtilisin_1 PA_sub 98.6 1.9E-07 4.2E-12 84.5 9.4 86 317-403 26-115 (118)
49 PF05922 Inhibitor_I9: Peptida 98.6 5.7E-08 1.2E-12 81.8 5.4 62 5-66 16-82 (82)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2.6E-07 5.7E-12 82.8 9.1 92 302-399 20-115 (120)
51 cd02127 PA_hPAP21_like PA_hPAP 98.6 3.3E-07 7.2E-12 82.6 9.9 89 318-407 21-117 (118)
52 cd02122 PA_GRAIL_like PA _GRAI 98.6 3.3E-07 7.2E-12 84.9 9.7 89 317-405 43-137 (138)
53 cd00538 PA PA: Protease-associ 98.5 4.4E-07 9.6E-12 83.0 8.9 85 318-402 30-122 (126)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.4 8E-07 1.7E-11 81.3 8.9 85 318-403 27-123 (126)
55 cd02125 PA_VSR PA_VSR: Proteas 98.4 2.3E-06 5E-11 78.2 10.8 87 318-404 22-125 (127)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.4 1.7E-06 3.7E-11 78.8 9.1 94 303-404 23-120 (122)
57 cd02132 PA_GO-like PA_GO-like: 98.3 2.9E-06 6.2E-11 79.0 9.2 83 318-403 48-136 (139)
58 cd04817 PA_VapT_like PA_VapT_l 98.3 2.5E-06 5.5E-11 78.7 8.3 74 326-399 50-134 (139)
59 cd04813 PA_1 PA_1: Protease-as 98.3 3.4E-06 7.3E-11 75.9 8.7 81 317-399 26-112 (117)
60 KOG3525 Subtilisin-like propro 98.3 4E-06 8.6E-11 92.2 10.5 158 79-255 22-189 (431)
61 COG4934 Predicted protease [Po 98.3 1.7E-05 3.7E-10 93.9 16.1 158 81-269 219-395 (1174)
62 cd02124 PA_PoS1_like PA_PoS1_l 98.2 6.7E-06 1.4E-10 75.4 10.1 98 304-403 28-126 (129)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.2 7.7E-06 1.7E-10 77.4 9.2 84 318-401 50-142 (153)
64 PF06280 DUF1034: Fn3-like dom 97.9 0.0001 2.2E-09 66.1 11.3 81 616-697 8-112 (112)
65 cd04819 PA_2 PA_2: Protease-as 97.8 0.00016 3.5E-09 66.3 10.2 91 301-400 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.2 0.0011 2.4E-08 61.3 8.0 77 327-403 34-131 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.5 0.005 1.1E-07 59.5 6.3 72 328-399 51-156 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.1 0.014 3E-07 54.2 6.7 63 302-367 20-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.0 0.022 4.8E-07 52.6 7.0 64 302-368 22-97 (137)
70 KOG2442 Uncharacterized conser 95.9 0.023 4.9E-07 61.5 7.8 79 328-406 91-175 (541)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 95.7 0.034 7.4E-07 52.2 7.2 64 302-368 20-101 (151)
72 cd02121 PA_GCPII_like PA_GCPII 95.2 0.073 1.6E-06 53.3 8.0 40 328-367 67-106 (220)
73 PF10633 NPCBM_assoc: NPCBM-as 94.7 0.17 3.8E-06 41.9 7.8 57 616-673 5-63 (78)
74 PF14874 PapD-like: Flagellar- 94.6 0.76 1.6E-05 40.0 12.2 80 616-699 20-100 (102)
75 cd02131 PA_hNAALADL2_like PA_h 94.4 0.048 1E-06 50.7 4.2 40 329-368 37-76 (153)
76 KOG3920 Uncharacterized conser 93.8 0.076 1.6E-06 48.9 4.2 100 303-409 65-174 (193)
77 KOG4628 Predicted E3 ubiquitin 90.9 0.56 1.2E-05 49.8 6.7 72 328-399 75-150 (348)
78 PF11614 FixG_C: IG-like fold 89.0 3.3 7.1E-05 37.2 9.4 56 616-673 31-87 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 88.7 2 4.4E-05 40.7 8.0 42 325-366 42-102 (157)
80 COG1470 Predicted membrane pro 73.0 15 0.00033 40.4 8.5 70 616-686 397-468 (513)
81 PF00345 PapD_N: Pili and flag 72.8 33 0.00072 30.7 9.7 68 617-686 15-89 (122)
82 PF06030 DUF916: Bacterial pro 68.7 91 0.002 28.2 11.6 69 616-686 27-119 (121)
83 PF07705 CARDB: CARDB; InterP 66.2 51 0.0011 27.8 9.1 51 616-671 19-72 (101)
84 PF07718 Coatamer_beta_C: Coat 66.2 55 0.0012 30.3 9.3 67 617-686 70-138 (140)
85 PF05753 TRAP_beta: Translocon 55.5 64 0.0014 31.4 8.4 66 616-684 38-109 (181)
86 TIGR02745 ccoG_rdxA_fixG cytoc 54.9 54 0.0012 36.6 8.7 55 616-672 346-401 (434)
87 COG1470 Predicted membrane pro 54.1 1.3E+02 0.0029 33.4 11.1 57 616-673 284-346 (513)
88 PF00635 Motile_Sperm: MSP (Ma 51.1 73 0.0016 27.5 7.5 51 617-671 19-70 (109)
89 PLN03080 Probable beta-xylosid 47.4 50 0.0011 39.9 7.5 77 617-695 685-778 (779)
90 smart00635 BID_2 Bacterial Ig- 45.8 59 0.0013 26.8 5.7 38 645-687 4-41 (81)
91 PF02845 CUE: CUE domain; Int 43.5 22 0.00048 25.4 2.4 24 487-510 5-28 (42)
92 PF08821 CGGC: CGGC domain; I 30.2 2.5E+02 0.0053 24.8 7.3 44 174-219 31-75 (107)
93 PRK15098 beta-D-glucoside gluc 29.8 87 0.0019 37.8 5.8 53 616-671 667-728 (765)
94 PF02601 Exonuc_VII_L: Exonucl 29.2 1.6E+02 0.0035 31.2 7.3 73 176-251 38-118 (319)
95 PF12690 BsuPI: Intracellular 27.7 2.7E+02 0.0058 23.2 6.8 19 652-671 53-71 (82)
96 PRK15019 CsdA-binding activato 27.6 52 0.0011 30.8 2.7 31 473-504 79-109 (147)
97 PF04255 DUF433: Protein of un 27.6 48 0.001 25.4 2.1 37 471-507 12-54 (56)
98 smart00546 CUE Domain that may 26.8 84 0.0018 22.4 3.1 25 486-510 5-29 (43)
99 TIGR03391 FeS_syn_CsdE cystein 26.6 57 0.0012 30.3 2.8 33 472-505 73-105 (138)
100 COG1570 XseA Exonuclease VII, 25.2 1.7E+02 0.0036 32.6 6.4 75 174-251 157-236 (440)
101 PF08260 Kinin: Insect kinin p 22.7 39 0.00085 15.3 0.4 6 423-428 3-8 (8)
102 PRK09296 cysteine desufuration 22.7 74 0.0016 29.5 2.7 32 472-504 68-99 (138)
103 PF13940 Ldr_toxin: Toxin Ldr, 21.9 63 0.0014 22.0 1.5 13 478-490 14-26 (35)
104 PF02657 SufE: Fe-S metabolism 21.1 88 0.0019 28.4 2.9 33 472-505 59-91 (125)
105 COG2166 sufE Cysteine desulfur 20.4 81 0.0018 29.4 2.5 31 473-504 74-104 (144)
106 TIGR01451 B_ant_repeat conserv 20.3 3.1E+02 0.0068 20.6 5.3 29 616-644 12-41 (53)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-50 Score=429.13 Aligned_cols=281 Identities=58% Similarity=0.962 Sum_probs=236.3
Q ss_pred eccCCCCCCcccCCCCCCC--CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccC-------Cc-
Q 005334 63 YELHTTRTPEFLGLGKSET--LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVG-------PI- 132 (701)
Q Consensus 63 ~~~~~~~s~~~~gl~~~~~--~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~-------~~- 132 (701)
++++++++++|+|+..... +|..+.+|+||+|||||||||++||+|.+....+.+..|.+.|...... ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4788999999999987655 4778999999999999999999999999988888888888777322110 00
Q ss_pred ---------------cCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecC-CCCChH
Q 005334 133 ---------------DETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWL-AGCFGS 196 (701)
Q Consensus 133 ---------------~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~ 196 (701)
+......++.|..||||||||||||+...+....|...+.+.|+||+|+|+.+|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 1122345678899999999999999987776666776777899999999999999988 448889
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCcee
Q 005334 197 DILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNF 276 (701)
Q Consensus 197 ~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~ 276 (701)
++++||++|++++++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987655667888888889999999999999999988888888999999999820
Q ss_pred eeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcC
Q 005334 277 PTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAG 356 (701)
Q Consensus 277 ~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~G 356 (701)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCC
Q 005334 357 GVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEI 436 (701)
Q Consensus 357 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~ 436 (701)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 437 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 437 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
+||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 478999999999999875311 111223357999999999999999999999999999999999999999985
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=9.2e-49 Score=406.76 Aligned_cols=270 Identities=23% Similarity=0.242 Sum_probs=203.8
Q ss_pred CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcc
Q 005334 86 SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASL 165 (701)
Q Consensus 86 ~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~ 165 (701)
+++|+||+|||||||||..||+|.+...+..+..+.. ........|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~d~~gHGT~vAgii---------- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV------------LGDLDGGSGGGDEGRAMLEII---------- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee------------ccccCCCCCCCchHHHHHHHH----------
Confidence 5789999999999999999886544332222222211 111234568889999999999
Q ss_pred cccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCCc-cCHHHHHHHHHHHC-CCEE
Q 005334 166 FGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYY-RDTVAIGAFTAMAQ-GIFV 243 (701)
Q Consensus 166 ~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~-~d~i~~a~~~a~~~-Gi~v 243 (701)
.||||+|+|+.+|+. ...+++++||+||++.|++|||||||....+.+ ...+..++.++.++ |++|
T Consensus 59 --------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~Gvlv 126 (275)
T cd05562 59 --------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLY 126 (275)
T ss_pred --------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEE
Confidence 489999999999874 457899999999999999999999998654433 34677778888887 9999
Q ss_pred EEecCCCCCCCC-ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccC
Q 005334 244 SCSAGNGGPYAN-SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCM 322 (701)
Q Consensus 244 V~AAGN~G~~~~-~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~ 322 (701)
|+||||+|+... ..+...|++|+|||.+.+....... |.
T Consensus 127 VaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------------------------------~~ 166 (275)
T cd05562 127 FSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------------------------------DP 166 (275)
T ss_pred EEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------------------------cc
Confidence 999999998543 3466889999999964332210000 00
Q ss_pred CCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCC
Q 005334 323 TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGP 402 (701)
Q Consensus 323 ~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 402 (701)
..
T Consensus 167 ----~~-------------------------------------------------------------------------- 168 (275)
T cd05562 167 ----AP-------------------------------------------------------------------------- 168 (275)
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCCCCCCCCCcccceeEeeccccchhh
Q 005334 403 MATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV-NILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCP 481 (701)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 481 (701)
.......+.|++|||+. ++++||||+|||. ++.+.+.. ..|..++|||||||
T Consensus 169 ------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP 221 (275)
T cd05562 169 ------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAP 221 (275)
T ss_pred ------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHH
Confidence 00011345678899987 5789999999975 44444433 27899999999999
Q ss_pred hHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 482 HVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 482 ~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 222 ~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 222 HAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999998742 2234589999999999986
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.7e-49 Score=434.10 Aligned_cols=293 Identities=20% Similarity=0.202 Sum_probs=211.4
Q ss_pred cccCCCC--CCCCCC--CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCC--Cccceee-----E-ecccCCccCCCCCC
Q 005334 72 EFLGLGK--SETLFP--TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVP--RGWKGVW-----Y-EEAVGPIDETAESK 139 (701)
Q Consensus 72 ~~~gl~~--~~~~~~--~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~--~~~~g~~-----~-~~~~~~~~~~~~~~ 139 (701)
..|+++. +..+|+ .+.+|+||+|||||||||++||+|.+....... ...++.. + +...+ ++......
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G-~nfVd~~~ 372 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYG-ANFVNNDG 372 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCccccccc-ccccCCCC
Confidence 3466654 344665 356899999999999999999999875311100 0001110 0 00111 23333445
Q ss_pred CCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEecc
Q 005334 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIG 218 (701)
Q Consensus 140 ~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG 218 (701)
+|.|..||||||||||||...++ ..+.||||+|+|+++|+++..| +..+++++||+||++.|++|||||||
T Consensus 373 ~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG 444 (639)
T PTZ00262 373 GPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFS 444 (639)
T ss_pred CCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccc
Confidence 67899999999999999975332 1248999999999999998776 78899999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCc--------------ccc----CCCceEEecCCccCceeeeEE
Q 005334 219 GGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANS--------------ISN----VAPWITTVGAGTLDRNFPTYV 280 (701)
Q Consensus 219 ~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~ap~vitVgAst~~~~~~~~~ 280 (701)
+.. +...+..++.+|.++|++||+||||+|+.... ++. ..|++|+|||...+..
T Consensus 445 ~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~----- 516 (639)
T PTZ00262 445 FDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN----- 516 (639)
T ss_pred cCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC-----
Confidence 742 34567778889999999999999999864321 111 1345555555321100
Q ss_pred EcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEE
Q 005334 281 SLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGM 360 (701)
Q Consensus 281 ~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~ 360 (701)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCc
Q 005334 361 ILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPD 440 (701)
Q Consensus 361 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 440 (701)
..-..+.||++|.. ++|
T Consensus 517 --------------------------------------------------------~~~s~s~~Snyg~~-------~VD 533 (639)
T PTZ00262 517 --------------------------------------------------------NQYSLSPNSFYSAK-------YCQ 533 (639)
T ss_pred --------------------------------------------------------CcccccccccCCCC-------cce
Confidence 00023345565522 359
Q ss_pred EEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccc
Q 005334 441 LIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTL 520 (701)
Q Consensus 441 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~ 520 (701)
|+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.+|+++|++||.++....
T Consensus 534 IaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~--- 597 (639)
T PTZ00262 534 LAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK--- 597 (639)
T ss_pred EEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC---
Confidence 999999999998764 7999999999999999999999999999999999999999998764211
Q ss_pred ccCCCCCCCCCCCCC-ccccCccccCCCCccc
Q 005334 521 LDISTGQPSTPFDFG-AGHVDPVAALDPGLVY 551 (701)
Q Consensus 521 ~~~~~~~~~~~~~~G-~G~vn~~~A~~~glv~ 551 (701)
. .+| .|+||+.+|++..+-+
T Consensus 598 ---------n--~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 598 ---------N--KVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ---------C--ccccCcEEcHHHHHHHHHhc
Confidence 1 233 3899999999976644
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.9e-48 Score=400.05 Aligned_cols=243 Identities=26% Similarity=0.355 Sum_probs=197.4
Q ss_pred CCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCC
Q 005334 83 FPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNG 162 (701)
Q Consensus 83 ~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~ 162 (701)
|+++++|+||+|||||||||.+||+|.+.... ..| .......|..||||||||||+|+..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~---~~~---------------~~~~~~~d~~gHGT~VAGiIa~~~~-- 60 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKER---TNW---------------TNEKTLDDGLGHGTFVAGVIASSRE-- 60 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccc---ccc---------------CCCCCCCCCCCcHHHHHHHHHccCC--
Confidence 88999999999999999999999999853110 011 1112456788999999999999742
Q ss_pred CcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCC
Q 005334 163 ASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGI 241 (701)
Q Consensus 163 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi 241 (701)
.+.||||+|+|+.+|++.+.+ +..+.++++|++|+++++||||||||... +....+..++.++.++|+
T Consensus 61 ---------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~~~~~~~~gi 129 (255)
T cd07479 61 ---------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKVWELTANNI 129 (255)
T ss_pred ---------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHHHHHHHHCCc
Confidence 248999999999999998776 56778999999999999999999999753 234556667778889999
Q ss_pred EEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCC
Q 005334 242 FVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGN 319 (701)
Q Consensus 242 ~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (701)
+||+||||+|+...+ .+...+++|+|||..
T Consensus 130 ~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------------------------------ 161 (255)
T cd07479 130 IMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------------------------------ 161 (255)
T ss_pred EEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------------------------------
Confidence 999999999976443 345678888888731
Q ss_pred ccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcC
Q 005334 320 LCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 320 ~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceeecccCCCceecccCCCCCCC----CCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334 400 PGPMATIISRGTQLGIQPSPVVAAFSSRGPNPI----TPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG 475 (701)
Q Consensus 400 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 475 (701)
..+.++.|||+|++.. ..+++||||.|||.+|+++.... .|..++|
T Consensus 162 -----------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~sG 211 (255)
T cd07479 162 -----------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALSG 211 (255)
T ss_pred -----------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEecc
Confidence 1226688999996531 25788999999999999876543 6889999
Q ss_pred ccchhhhHhHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 005334 476 TSMSCPHVSGLAALLKAAHP----EWSPSAIKSALMTTAYSTN 514 (701)
Q Consensus 476 TSmAaP~VAG~aALl~~~~P----~~sp~~Ik~~L~~TA~~~~ 514 (701)
||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 212 TS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 212 TSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999999999999999999 7999999999999999864
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-48 Score=406.40 Aligned_cols=283 Identities=28% Similarity=0.288 Sum_probs=189.4
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceee-Ee-cccCCccCC-CCCCCCCCCCCChhHHHHhhcccccCCCcc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVW-YE-EAVGPIDET-AESKSPRDDDGHGTHTSTTAAGSVVNGASL 165 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~-~~-~~~~~~~~~-~~~~~~~D~~gHGThvAgiaAG~~~~~~~~ 165 (701)
|+||+|+|||||||.+||+|.++... .|...+ +. ......+.. .....+.|.+||||||||||||+.....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~~~~~~ 76 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGKMEYNL 76 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCcccccc
Confidence 89999999999999999999754211 111000 00 000001111 111346899999999999999986433322
Q ss_pred cccC-CCceeeecCCCeEEEEEeecCCC-CChHHHHH-------HHHHH--HHcCCeEEEEeccCCCCCCc-----cCHH
Q 005334 166 FGFA-SGTARGMAAQARVATYKVCWLAG-CFGSDILA-------GMDKA--IEDGVNVMSMSIGGGLTDYY-----RDTV 229 (701)
Q Consensus 166 ~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--i~~gvdVInlSlG~~~~~~~-----~d~i 229 (701)
+++. ...+.||||+|+|+.+|++...+ +....+.. +++|+ .+++++|||||||.....+. .+..
T Consensus 77 ~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~ 156 (311)
T cd07497 77 YGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDIS 156 (311)
T ss_pred cccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccccCcCHH
Confidence 2211 23468999999999999996543 32333333 34443 36799999999998542211 1222
Q ss_pred HHHHHH-HHHCCCEEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeE
Q 005334 230 AIGAFT-AMAQGIFVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPI 306 (701)
Q Consensus 230 ~~a~~~-a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l 306 (701)
+..... +.++|+++|+||||+|+...+ .+..++++|+|||++.....+. +..
T Consensus 157 ~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-------------------------~~~ 211 (311)
T cd07497 157 SLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-------------------------YLF 211 (311)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-------------------------hhh
Confidence 222222 238999999999999986443 4557899999999643211000 000
Q ss_pred EEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEech
Q 005334 307 VDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGE 386 (701)
Q Consensus 307 ~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 386 (701)
.+
T Consensus 212 ~~------------------------------------------------------------------------------ 213 (311)
T cd07497 212 GY------------------------------------------------------------------------------ 213 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcc
Q 005334 387 KAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKR 466 (701)
Q Consensus 387 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 466 (701)
.....+.++.||||||+. ++++||||+|||++|+++.+...... ....
T Consensus 214 ---------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~ 261 (311)
T cd07497 214 ---------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDG 261 (311)
T ss_pred ---------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCC
Confidence 001234789999999998 59999999999999999876542200 0111
Q ss_pred cceeEeeccccchhhhHhHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 005334 467 HVSFNIISGTSMSCPHVSGLAALLKAAHP------EWSPSAIKSALMTTA 510 (701)
Q Consensus 467 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~Ik~~L~~TA 510 (701)
...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 262 ~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 262 NEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 24699999999999999999999999986 689999999999997
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.1e-46 Score=411.90 Aligned_cols=402 Identities=23% Similarity=0.244 Sum_probs=227.8
Q ss_pred CCCCCCEEEEEccCCCCCCCCccCC-CCCCCCCccceeeEeccc------C----------C--ccCCCCCCCCCCCCCC
Q 005334 87 EVQSEVIVGVLDTGVWPEIKSFDDT-GMGPVPRGWKGVWYEEAV------G----------P--IDETAESKSPRDDDGH 147 (701)
Q Consensus 87 ~~G~gVvVgVIDtGId~~Hp~f~~~-~~~~~~~~~~g~~~~~~~------~----------~--~~~~~~~~~~~D~~gH 147 (701)
.+|+||+|||||||||+.||+|.+. +..++...|+........ + . .....+.....|..||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 3799999999999999999999954 445566667654411100 0 0 0011112235689999
Q ss_pred hhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-----------CChHHHHHHHHHHHHc-----CCe
Q 005334 148 GTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-----------CFGSDILAGMDKAIED-----GVN 211 (701)
Q Consensus 148 GThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~ai~~-----gvd 211 (701)
||||||||||+..++ ..+.||||+|+|+++|++...+ +..++++.||+|+++. .+.
T Consensus 81 GThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~ 152 (455)
T cd07478 81 GTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPL 152 (455)
T ss_pred hHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCe
Confidence 999999999996442 2348999999999999998765 5678999999999874 478
Q ss_pred EEEEeccCCCC-CCccCHHHHHHHHHHHC-CCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEE
Q 005334 212 VMSMSIGGGLT-DYYRDTVAIGAFTAMAQ-GIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFS 289 (701)
Q Consensus 212 VInlSlG~~~~-~~~~d~i~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~ 289 (701)
|||||||.... ....+.++.++..+.++ |++||+||||+|....+.... +... ...-...+..+.++.-.
T Consensus 153 VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~----~~~~----~~~~~ie~~v~~~~~~~ 224 (455)
T cd07478 153 VINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGG----IVPN----GETKTVELNVGEGEKGF 224 (455)
T ss_pred EEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeee----eccC----CceEEEEEEECCCCcce
Confidence 99999998653 34456777777777765 999999999999754443321 0000 00011122222222111
Q ss_pred EEEeecCCCCCCceeeEEEcCCCCCCcCC-CccCCCCCCCCCccceEEEEecCCCchh--hhhHHHhHcCceEEEEeecC
Q 005334 290 GVSLYSRRPLSGSMVPIVDAANVSSTSSG-NLCMTGSLIPAKVAGKIVVCDRGGNSRV--EKGVEVKDAGGVGMILTNTD 366 (701)
Q Consensus 290 g~s~~~~~~~~~~~~~l~~~~~~~~~~~~-~~C~~~~~~~~~~~gkiv~~~~g~~~~~--~~~~~~~~~Ga~g~i~~n~~ 366 (701)
...++.... ..-.+.++.........-. ..-....+.......++.+..+...... +........-..|++...-.
T Consensus 225 ~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~~ 303 (455)
T cd07478 225 NLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLT 303 (455)
T ss_pred EEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEEE
Confidence 111111110 0001111111110000000 0000000000000111111111000000 00000000111122211111
Q ss_pred CCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceee------c-ccCCCceecccCCCCCCCCCCCCCC
Q 005334 367 SYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQL------G-IQPSPVVAAFSSRGPNPITPEILKP 439 (701)
Q Consensus 367 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~------~-~~~~~~~a~fSS~GP~~~~~~~lKP 439 (701)
...........++|.-.+...+.. ++.. ++..+++...+.. . ......++.||||||+. ++++||
T Consensus 304 ~~~~~~g~~~~Wlp~~~~~~~~t~----f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kp 375 (455)
T cd07478 304 GVSITDGRFDAWLPSRGLLSENTR----FLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKP 375 (455)
T ss_pred eccCCCceEEEEecCcCcCCCCCE----eecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcCc
Confidence 100001112234443333322211 1111 2333444333211 1 12234699999999998 699999
Q ss_pred cEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhC------CCCCHHHHHHHHHhccccC
Q 005334 440 DLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAH------PEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 440 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~sp~~Ik~~L~~TA~~~ 513 (701)
||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|++||+++
T Consensus 376 di~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~ 442 (455)
T cd07478 376 DIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRR 442 (455)
T ss_pred eEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccC
Confidence 9999999999998864 79999999999999999999999975 5679999999999999987
Q ss_pred CCCCcccccCCCCCCCCCCCCCcc
Q 005334 514 NGNGKTLLDISTGQPSTPFDFGAG 537 (701)
Q Consensus 514 ~~~g~~~~~~~~~~~~~~~~~G~G 537 (701)
. ...+++.+||||
T Consensus 443 ~-----------~~~~pn~~~GyG 455 (455)
T cd07478 443 P-----------GDEYPNPEWGYG 455 (455)
T ss_pred C-----------CCCCCCCCCCCC
Confidence 4 234567799998
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-46 Score=396.22 Aligned_cols=292 Identities=30% Similarity=0.371 Sum_probs=225.2
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCC--CCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcc
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGP--VPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAG 157 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG 157 (701)
+.+|+.+++|+||+|||||+|||++||+|.+...+. ....|+-. .+... ..+...+...+.|..||||||||||+|
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~-~~~~~-~~~~~~~~~~~~d~~gHGT~vAgiia~ 80 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFV-GDDYD-GTNPPVPDDDPMDCQGHGTHVAGIIAA 80 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccC-Ccccc-cccCCCCCCCCCCCCCcHHHHHHHHhc
Confidence 468999999999999999999999999998753221 01111100 00000 011123334567889999999999999
Q ss_pred cccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 158 SVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 158 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
...+ .| +.|+||+|+|+.+|++...+ .....++++|++|++++++|||+|||.... +..+.+...+.++
T Consensus 81 ~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~-~~~~~~~~~~~~~ 150 (312)
T cd07489 81 NPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSG-WSEDPWAVVASRI 150 (312)
T ss_pred CCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCC-CCCCHHHHHHHHH
Confidence 8643 12 48999999999999998665 667778999999999999999999998542 2346677777888
Q ss_pred HHCCCEEEEecCCCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 151 ~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------------------------ 188 (312)
T cd07489 151 VDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------------------------ 188 (312)
T ss_pred HHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------------------------------
Confidence 9999999999999986532 2345667788887620
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
+.||++||+. +...||||+|||++++++++... ..|..+
T Consensus 189 ----------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~ 227 (312)
T cd07489 189 ----------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVL 227 (312)
T ss_pred ----------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEee
Confidence 4588999988 47899999999999999887642 158999
Q ss_pred ccccchhhhHhHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCCCCc
Q 005334 474 SGTSMSCPHVSGLAALLKAAH-PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGL 549 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~-P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~gl 549 (701)
+|||||||+|||++|||+|++ |.+++.+||++|++||..+...+.... ....++...+|+|+||+.+|++..-
T Consensus 228 ~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 228 SGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999999999999999 999999999999999998764432111 1123566799999999999999543
No 8
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.7e-46 Score=401.56 Aligned_cols=300 Identities=26% Similarity=0.334 Sum_probs=218.9
Q ss_pred CCCCCC-CCCCCEEEEEccCCCCCCCCccCCCCCCCCC-----ccceeeEec---c-cCC----ccCCCCCCC---CCCC
Q 005334 82 LFPTSE-VQSEVIVGVLDTGVWPEIKSFDDTGMGPVPR-----GWKGVWYEE---A-VGP----IDETAESKS---PRDD 144 (701)
Q Consensus 82 ~~~~~~-~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~-----~~~g~~~~~---~-~~~----~~~~~~~~~---~~D~ 144 (701)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+... . ..+ ++..+.... ..|.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDDG 81 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCCC
Confidence 688877 9999999999999999999998764332100 000000000 0 000 111111111 3478
Q ss_pred CCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecC--C-CCChHHHHHHHHHHHHcCCeEEEEeccCCC
Q 005334 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWL--A-GCFGSDILAGMDKAIEDGVNVMSMSIGGGL 221 (701)
Q Consensus 145 ~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~-g~~~~~i~~ai~~ai~~gvdVInlSlG~~~ 221 (701)
.+|||||||||+|....... ...+.|+||+|+|+.+|+++. . .+....+++|++++++.|++|||||||...
T Consensus 82 ~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 156 (346)
T cd07475 82 SSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156 (346)
T ss_pred CCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 89999999999998644211 223599999999999999973 3 377888999999999999999999999865
Q ss_pred CC-CccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccc----------------cCCCceEEecCCccCceeeeEEEcCC
Q 005334 222 TD-YYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSIS----------------NVAPWITTVGAGTLDRNFPTYVSLGN 284 (701)
Q Consensus 222 ~~-~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVgAst~~~~~~~~~~l~~ 284 (701)
.. .....+..++.++.++|++||+||||+|....... ...+++|+||+...
T Consensus 157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~------------ 224 (346)
T cd07475 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK------------ 224 (346)
T ss_pred CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc------------
Confidence 32 44566777888899999999999999986543211 12334444444210
Q ss_pred CcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEee
Q 005334 285 GKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTN 364 (701)
Q Consensus 285 g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 364 (701)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEec
Q 005334 365 TDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAP 444 (701)
Q Consensus 365 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 444 (701)
.........++.||+|||+. ..++||||+||
T Consensus 225 -----------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 225 -----------------------------------------------KVPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred -----------------------------------------------ccCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 00012334788999999998 58999999999
Q ss_pred CCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCC
Q 005334 445 GVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPSA----IKSALMTTAYSTNGN 516 (701)
Q Consensus 445 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----Ik~~L~~TA~~~~~~ 516 (701)
|.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+...
T Consensus 256 G~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~- 321 (346)
T cd07475 256 GGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLD- 321 (346)
T ss_pred CCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccc-
Confidence 99999987653 7889999999999999999999998 79999877 78899999995321
Q ss_pred CcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 517 GKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 517 g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
.......+.+..+|+|+||+.+|++
T Consensus 322 -----~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 322 -----SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----cCCCCccCCccccCcchhcHHHhhC
Confidence 1112556778899999999999985
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=5e-46 Score=385.20 Aligned_cols=246 Identities=24% Similarity=0.302 Sum_probs=203.3
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
+|..+++|+||+|||||+|||++||+|.+..+.+....| .......|..+|||||||||+|+...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~---------------~~~~~~~~~~gHGT~VAgii~g~~~~ 66 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYA---------------AAACQDGGASAHGTHVASLIFGQPCS 66 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCcc---------------ccCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999999999999876433211111 01224567889999999999987421
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCC-CCccCHHHHHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLT-DYYRDTVAIGAFTAMA 238 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~ 238 (701)
.+.||||+|+|+.+|++...+ +...++++||++|+++|+||||||||.... ......+..++.+|.+
T Consensus 67 ----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~ 136 (267)
T cd07476 67 ----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQ 136 (267)
T ss_pred ----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHH
Confidence 248999999999999997654 457789999999999999999999997542 3345667888888999
Q ss_pred CCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCC
Q 005334 239 QGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSG 318 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (701)
+|++||+||||+|.....++...|++|+|||...
T Consensus 137 ~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------------------- 170 (267)
T cd07476 137 NNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------------------------------- 170 (267)
T ss_pred CCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------------------------------
Confidence 9999999999999877777888899999998321
Q ss_pred CccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhc
Q 005334 319 NLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISS 398 (701)
Q Consensus 319 ~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 398 (701)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccc
Q 005334 399 DPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSM 478 (701)
Q Consensus 399 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 478 (701)
.+.++.||++|+.. .||||+|||.+|+++.+.+ .|..++||||
T Consensus 171 -------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~ 213 (267)
T cd07476 171 -------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSF 213 (267)
T ss_pred -------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHH
Confidence 11456789999764 3889999999999987764 6899999999
Q ss_pred hhhhHhHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 005334 479 SCPHVSGLAALLKAAHPE----WSPSAIKSALMTTAYSTNG 515 (701)
Q Consensus 479 AaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA~~~~~ 515 (701)
|||||||++|||++++|. ++|++||++|++||+++..
T Consensus 214 AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 214 AAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999887 9999999999999999864
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-44 Score=382.85 Aligned_cols=283 Identities=37% Similarity=0.553 Sum_probs=211.9
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCC--------CCCCCCCCCCChhHHHHhhccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETA--------ESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
|+||+|||||+||+++||+|.+..... .++.. .++.......... ......|..+|||||||+|+|...
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~ 77 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPN--DKVKG-GYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGV 77 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCC--Cceee-eeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCC
Confidence 899999999999999999998542110 11111 1211111000000 111245688999999999998854
Q ss_pred CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC
Q 005334 161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ 239 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~ 239 (701)
+ ...+.|+||+|+|+.+|++...+ +...+++++|+++++++++|||||||..... ..+.+..++.++.++
T Consensus 78 n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~~~~~~~~~~~~~~~ 148 (295)
T cd07474 78 N--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-PDDPDAIAINNAVKA 148 (295)
T ss_pred c--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCHHHHHHHHHHhc
Confidence 3 22348999999999999997544 7888999999999999999999999975432 356777788899999
Q ss_pred CCEEEEecCCCCCCCCcc--ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 240 GIFVSCSAGNGGPYANSI--SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 240 Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
|+++|+||||+|...... +...+++|+|||+....
T Consensus 149 gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------------------------------- 185 (295)
T cd07474 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------------------------------- 185 (295)
T ss_pred CCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-------------------------------------------
Confidence 999999999998765543 45788999999853100
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCC-CCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRG-PNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGT 476 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 476 (701)
.........|+++| +.. ...+||||+|||++|++++.... ..|..++||
T Consensus 186 -----------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-----------~~~~~~~GT 235 (295)
T cd07474 186 -----------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-----------TGYARMSGT 235 (295)
T ss_pred -----------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-----------CceEEeccH
Confidence 00111334445544 444 58899999999999999987631 268999999
Q ss_pred cchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCcccc
Q 005334 477 SMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAA 544 (701)
Q Consensus 477 SmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A 544 (701)
|||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 236 S~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcceeccccC
Confidence 999999999999999999999999999999999998864331 222445999999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-45 Score=371.96 Aligned_cols=234 Identities=26% Similarity=0.353 Sum_probs=189.9
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|||||||||.+||+|.++.+. .| . .......|..+|||||||||+|+....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~----~~------------~--~~~~~~~~~~~HGT~vAgiia~~~~~~--------- 53 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA----RL------------F--FAGPGAPAPSAHGTAVASLLAGAGAQR--------- 53 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc----cc------------c--CCCCCCCCCCCCHHHHHHHHhCCCCCC---------
Confidence 78999999999999999765322 00 0 001135678899999999999985321
Q ss_pred ceeeecCCCeEEEEEeecCCC----CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEec
Q 005334 172 TARGMAAQARVATYKVCWLAG----CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSA 247 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AA 247 (701)
.|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...+..++.++.++|++||+||
T Consensus 54 --~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~~gilvv~Aa 127 (239)
T cd05561 54 --PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAARGMVLVAAA 127 (239)
T ss_pred --cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEec
Confidence 6999999999999998642 67788999999999999999999999743 3456777778999999999999
Q ss_pred CCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCC
Q 005334 248 GNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSL 326 (701)
Q Consensus 248 GN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~ 326 (701)
||+|+.. ..++...|++|+|++..
T Consensus 128 GN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------------------------------- 152 (239)
T cd05561 128 GNDGPAAPPLYPAAYPGVIAVTAVD------------------------------------------------------- 152 (239)
T ss_pred CCCCCCCCccCcccCCCceEEEeec-------------------------------------------------------
Confidence 9999753 35666778888888731
Q ss_pred CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEE
Q 005334 327 IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATI 406 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 406 (701)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHH
Q 005334 407 ISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGL 486 (701)
Q Consensus 407 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 486 (701)
..+.++.||++|+.. ||.|||++|+++.+.+ .|..++|||||||||||+
T Consensus 153 ----------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~ 201 (239)
T cd05561 153 ----------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAA 201 (239)
T ss_pred ----------CCCCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHHH
Confidence 112556789999876 9999999999976553 789999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCcc
Q 005334 487 AALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAG 537 (701)
Q Consensus 487 aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 537 (701)
+|||+|++| +++++||++|++||+++... .....||||
T Consensus 202 aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G~G 239 (239)
T cd05561 202 LALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFGYG 239 (239)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcCCC
Confidence 999999999 99999999999999987532 233488987
No 12
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.3e-44 Score=374.11 Aligned_cols=247 Identities=33% Similarity=0.420 Sum_probs=195.6
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
|+||+|||||+||+++||+|.+.-.. |.+..++.....++.......+.|..+|||||||||+|.....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~~------ 69 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-----WGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGDG------ 69 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-----cCCCCcccccccccCCCCCCCCCCCCCchhhhhhheeecCCCC------
Confidence 89999999999999999999875111 1111111111111122223456788999999999999874321
Q ss_pred CCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH------------cCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334 169 ASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE------------DGVNVMSMSIGGGLTDYYRDTVAIGAFTA 236 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~------------~gvdVInlSlG~~~~~~~~d~i~~a~~~a 236 (701)
...|+||+|+|+.+|++...++...+++++++++++ .|++|||||||.... ....+..++..+
T Consensus 70 ---~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~ 144 (264)
T cd07481 70 ---QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DNEWLQPAVAAW 144 (264)
T ss_pred ---CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--CchHHHHHHHHH
Confidence 128999999999999998877888899999999985 789999999998643 234555666678
Q ss_pred HHCCCEEEEecCCCCCCCCc---cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334 237 MAQGIFVSCSAGNGGPYANS---ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS 313 (701)
Q Consensus 237 ~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~ 313 (701)
.++|++||+||||+|..... .+...|++|+|||.+
T Consensus 145 ~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------------------------------ 182 (264)
T cd07481 145 RAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------------------------------ 182 (264)
T ss_pred HHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC------------------------------------------
Confidence 88999999999999865432 456778888888732
Q ss_pred CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334 314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334 394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII 473 (701)
Q Consensus 394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 473 (701)
..+.++.||++||.. .+++||||+|||.+|+++++.+ .|..+
T Consensus 183 -----------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~ 224 (264)
T cd07481 183 -----------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGSS 224 (264)
T ss_pred -----------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEee
Confidence 112567899999988 4899999999999999998764 78899
Q ss_pred ccccchhhhHhHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 005334 474 SGTSMSCPHVSGLAALLKAAHPE--WSPSAIKSALMTTAY 511 (701)
Q Consensus 474 sGTSmAaP~VAG~aALl~~~~P~--~sp~~Ik~~L~~TA~ 511 (701)
+|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 225 ~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 225 SGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999 999999999999985
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=5.1e-44 Score=383.54 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=165.1
Q ss_pred CCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEecc
Q 005334 142 RDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIG 218 (701)
Q Consensus 142 ~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG 218 (701)
.|..+|||||||||||+..++ ..+.|+||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467799999999999985332 2358999999999999986532 23457999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHH-HHHCCCEEEEecCCCCCCCCcccc---CCCceEEecCCccCceeeeEEEcCCCcEEEEEEee
Q 005334 219 GGLTDYYRDTVAIGAFT-AMAQGIFVSCSAGNGGPYANSISN---VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLY 294 (701)
Q Consensus 219 ~~~~~~~~d~i~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~ 294 (701)
..........+...+.+ +.++|+++|+||||+|+...++.. .++++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86431112233333433 457899999999999987766542 46899999995321100000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccc
Q 005334 295 SRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVA 374 (701)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 374 (701)
|.
T Consensus 319 ---------y~--------------------------------------------------------------------- 320 (412)
T cd04857 319 ---------YS--------------------------------------------------------------------- 320 (412)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 005334 375 DAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTG 454 (701)
Q Consensus 375 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 454 (701)
......+.++.||||||+. ++.+||||+|||+.|.+.-..
T Consensus 321 --------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 321 --------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW 360 (412)
T ss_pred --------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC
Confidence 0001234688999999998 699999999999999875221
Q ss_pred CCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 005334 455 AVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 455 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~ 513 (701)
. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 T-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred C-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 1 12688999999999999999999975 579999999999999999864
No 14
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.2e-43 Score=372.97 Aligned_cols=251 Identities=27% Similarity=0.386 Sum_probs=181.9
Q ss_pred CCCEEEEEccCCCCCCCCccCCCCCC---CC--------Cccceee--Eeccc----------CCccC------CCCCCC
Q 005334 90 SEVIVGVLDTGVWPEIKSFDDTGMGP---VP--------RGWKGVW--YEEAV----------GPIDE------TAESKS 140 (701)
Q Consensus 90 ~gVvVgVIDtGId~~Hp~f~~~~~~~---~~--------~~~~g~~--~~~~~----------~~~~~------~~~~~~ 140 (701)
|+|+|||||||||++||+|++..+.. .+ ..|..+| |+... ...+. ......
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998753211 00 0111111 11100 00000 011223
Q ss_pred CCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCC
Q 005334 141 PRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGG 220 (701)
Q Consensus 141 ~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~ 220 (701)
+.+..+|||||||||||...+.. | +.|+||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 45688999999999999854321 2 489999999999999865446778999999999999999999999974
Q ss_pred CCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCcc---c--------cCCCceEEecCCccCceeeeEEEcCCCcEEE
Q 005334 221 LTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSI---S--------NVAPWITTVGAGTLDRNFPTYVSLGNGKSFS 289 (701)
Q Consensus 221 ~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAst~~~~~~~~~~l~~g~~~~ 289 (701)
... ....+..++..|.++|+++|+||||+|...... + ...+++|+|||....
T Consensus 153 ~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (291)
T cd07483 153 FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK---------------- 215 (291)
T ss_pred CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc----------------
Confidence 322 234566677788999999999999998542211 1 122444555542110
Q ss_pred EEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC
Q 005334 290 GVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG 369 (701)
Q Consensus 290 g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 369 (701)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEE
Q 005334 370 EELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNIL 449 (701)
Q Consensus 370 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~ 449 (701)
.....++.||++|+. +|||.|||++|+
T Consensus 216 ----------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~ 242 (291)
T cd07483 216 ----------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIY 242 (291)
T ss_pred ----------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeE
Confidence 011256789999974 459999999999
Q ss_pred ecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 450 AGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 450 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 243 s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 243 STTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 987654 7899999999999999999999999999999999999999984
No 15
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2.3e-43 Score=368.32 Aligned_cols=261 Identities=26% Similarity=0.307 Sum_probs=200.9
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCcc-ceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGW-KGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV 160 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~ 160 (701)
+|..+++|+||+|||||||||++||+|.+.........+ ...++. .+.........|..||||||||||+|+..
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gHGT~VAgiia~~~~ 76 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFV-----PNVGDIDNDVSVGGGHGTHVAGTIAAVNN 76 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccc-----cccCCcCCCCCCCCCCHHHHHHHHHcccC
Confidence 799999999999999999999999999987211000000 000000 00011123456788999999999999754
Q ss_pred CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC
Q 005334 161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ 239 (701)
Q Consensus 161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~ 239 (701)
.....-|.+ .+.|+||+|+|+.+|++...+ +...+++++|++|++.|++|||||||......+...+..++..+.++
T Consensus 77 ~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~ 154 (273)
T cd07485 77 NGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIEN 154 (273)
T ss_pred CCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHHHHHHHHHHHHh
Confidence 332221221 236799999999999998754 77788999999999999999999999865444556677777788888
Q ss_pred -------CCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCC
Q 005334 240 -------GIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANV 312 (701)
Q Consensus 240 -------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~ 312 (701)
|++||+||||+|......+...|++|+||+.+.
T Consensus 155 ~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~---------------------------------------- 194 (273)
T cd07485 155 AGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT---------------------------------------- 194 (273)
T ss_pred cccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC----------------------------------------
Confidence 999999999999887766778899999998421
Q ss_pred CCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 005334 313 SSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 313 ~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 392 (701)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCCCCCCCCCcccceeE
Q 005334 393 KNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGV-NILAGWTGAVGPTGLESDKRHVSFN 471 (701)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 471 (701)
.+.++.||++|+.. ||+|||. .|+++++.... .....|.
T Consensus 195 -------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~ 234 (273)
T cd07485 195 -------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYE 234 (273)
T ss_pred -------------------------CCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeE
Confidence 12556899999876 9999999 88888765311 1123689
Q ss_pred eeccccchhhhHhHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPE-WSPSAIKSALMTT 509 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~Ik~~L~~T 509 (701)
.++|||||||+|||++|||+|++|+ |+|+|||++|++|
T Consensus 235 ~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 235 YLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999986
No 16
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-43 Score=366.46 Aligned_cols=242 Identities=30% Similarity=0.355 Sum_probs=188.0
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCC-CCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKS-PRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
||+||||||||+++||+|....... ..++.+. + +....... ..|..+|||||||+|+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~-~~~i~~~-~-------~~~~~~~~~~~~~~~HGT~vagiia~~~~--------- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFK-NLRILGE-Y-------DFVDNSNNTNYTDDDHGTAVLSTMAGYTP--------- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcccc-CCceeee-e-------cCccCCCCCCCCCCCchhhhheeeeeCCC---------
Confidence 7999999999999999995221100 0011111 1 11112222 36788999999999999742
Q ss_pred CCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCc------------cCHHHHHHH
Q 005334 170 SGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYY------------RDTVAIGAF 234 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~------------~d~i~~a~~ 234 (701)
+...|+||+|+|+.+|+..... ....++++|+++|.+.|++|||||||....... ...+..++.
T Consensus 63 -~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 141 (261)
T cd07493 63 -GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAAN 141 (261)
T ss_pred -CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHH
Confidence 2358999999999999875432 345678999999999999999999998643211 235667778
Q ss_pred HHHHCCCEEEEecCCCCCC---CCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCC
Q 005334 235 TAMAQGIFVSCSAGNGGPY---ANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAAN 311 (701)
Q Consensus 235 ~a~~~Gi~vV~AAGN~G~~---~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~ 311 (701)
.|.++|+++|+||||+|.. ....+...|++|+|||..
T Consensus 142 ~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~---------------------------------------- 181 (261)
T cd07493 142 IAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD---------------------------------------- 181 (261)
T ss_pred HHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec----------------------------------------
Confidence 8999999999999999976 345566788999999731
Q ss_pred CCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHH
Q 005334 312 VSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDA 391 (701)
Q Consensus 312 ~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 391 (701)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeE
Q 005334 392 IKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFN 471 (701)
Q Consensus 392 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 471 (701)
..+.++.||++||.. ++++||||+|||.+|++..... .|.
T Consensus 182 -------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~~-------------~~~ 221 (261)
T cd07493 182 -------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGDG-------------NIT 221 (261)
T ss_pred -------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCCC-------------cEE
Confidence 112567899999987 6899999999999999854432 689
Q ss_pred eeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
.++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 222 ~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 222 YANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5e-43 Score=364.26 Aligned_cols=256 Identities=34% Similarity=0.457 Sum_probs=204.8
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
|+||+|+|||+||+++||+|.+.... .+.. ...........|..+|||||||+|+|.....
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~~~---------~~~~~~~~~~~d~~~HGT~vAgiiag~~~~~------ 61 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FADF---------VNTVNGRTTPYDDNGHGTHVAGIIAGSGRAS------ 61 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cccc---------cccccCCCCCCCCCCchHHHHHHHhcCCccc------
Confidence 89999999999999999999976322 1110 0001123456778899999999999985432
Q ss_pred CCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc----CCeEEEEeccCCCC-CCccCHHHHHHHHHHHCCCE
Q 005334 169 ASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED----GVNVMSMSIGGGLT-DYYRDTVAIGAFTAMAQGIF 242 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~----gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~~Gi~ 242 (701)
.+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|||||||.... ....+.+..++.++.++|++
T Consensus 62 -~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gil 140 (264)
T cd07487 62 -NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIV 140 (264)
T ss_pred -CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCE
Confidence 22358999999999999998776 6778999999999998 99999999998653 45667888888899999999
Q ss_pred EEEecCCCCCCCC--ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCc
Q 005334 243 VSCSAGNGGPYAN--SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNL 320 (701)
Q Consensus 243 vV~AAGN~G~~~~--~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (701)
||+||||+|.... ..+...+++|+|||...+..
T Consensus 141 vv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------------------- 175 (264)
T cd07487 141 VVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------------------- 175 (264)
T ss_pred EEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------------------
Confidence 9999999998765 55567889999998432110
Q ss_pred cCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCC
Q 005334 321 CMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDP 400 (701)
Q Consensus 321 C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 400 (701)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchh
Q 005334 401 GPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSC 480 (701)
Q Consensus 401 ~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 480 (701)
....++.||++||+. ++++||||+|||++|+++.+..... .......|..++||||||
T Consensus 176 ----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 ----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred ----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHH
Confidence 001568899999998 6899999999999999986653111 112224789999999999
Q ss_pred hhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 481 PHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 481 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|||++|||+|++|+|++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-42 Score=363.91 Aligned_cols=262 Identities=26% Similarity=0.237 Sum_probs=185.9
Q ss_pred EEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCc
Q 005334 93 IVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGT 172 (701)
Q Consensus 93 vVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~ 172 (701)
+|||||||||.+||+|.+.... +.++ . .....+.|..||||||||||++..... ..
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~-------~~~~-------~--~~~~~~~d~~gHGT~vAgiia~~~~~~--------~~ 57 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAE-------DDLD-------S--DEPGWTADDLGHGTAVAGLALYGDLTL--------PG 57 (291)
T ss_pred EEEEecCCCCCCChhhhhhhcc-------cccc-------c--cCCCCcCCCCCChHHHHHHHHcCcccC--------CC
Confidence 7999999999999999875211 0000 0 011116789999999999999764321 12
Q ss_pred eeeecCCCeEEEEEeecCCC-----CChHHHHHHHHHHHHcC---CeEEEEeccCCCCCCc--cCHHHHHHH-HHHHCCC
Q 005334 173 ARGMAAQARVATYKVCWLAG-----CFGSDILAGMDKAIEDG---VNVMSMSIGGGLTDYY--RDTVAIGAF-TAMAQGI 241 (701)
Q Consensus 173 ~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~ai~~g---vdVInlSlG~~~~~~~--~d~i~~a~~-~a~~~Gi 241 (701)
..|+||+++|+.+|++...| ....++++||+|+++.+ ++|||||||....... ...+..++. .+.++|+
T Consensus 58 ~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gv 137 (291)
T cd04847 58 NGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDV 137 (291)
T ss_pred CCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHHHhccCCe
Confidence 37999999999999998763 56678999999999853 5999999998653211 123444443 3568999
Q ss_pred EEEEecCCCCCCCCc------------cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEc
Q 005334 242 FVSCSAGNGGPYANS------------ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDA 309 (701)
Q Consensus 242 ~vV~AAGN~G~~~~~------------~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~ 309 (701)
+||+||||+|..... .+..++++|+|||.+.+......-
T Consensus 138 lvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----------------------------- 188 (291)
T cd04847 138 LFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----------------------------- 188 (291)
T ss_pred EEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----------------------------
Confidence 999999999977543 244678999999964432210000
Q ss_pred CCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhH
Q 005334 310 ANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAG 389 (701)
Q Consensus 310 ~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g 389 (701)
.
T Consensus 189 ------------~------------------------------------------------------------------- 189 (291)
T cd04847 189 ------------R------------------------------------------------------------------- 189 (291)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCC-----CCCCCC
Q 005334 390 DAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP-----TGLESD 464 (701)
Q Consensus 390 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~-----~~~~~~ 464 (701)
.+.......+.||+|||.. ++.+||||+|||++|.+........ ......
T Consensus 190 -----------------------~~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd04847 190 -----------------------YSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSS 244 (291)
T ss_pred -----------------------ccccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccC
Confidence 0000001223399999998 6999999999999998865432100 000011
Q ss_pred cccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 465 KRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 465 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
.....|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 245 ~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 22347999999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=8.6e-42 Score=353.13 Aligned_cols=232 Identities=35% Similarity=0.491 Sum_probs=192.3
Q ss_pred CCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccC
Q 005334 82 LFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVN 161 (701)
Q Consensus 82 ~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~ 161 (701)
+|..+++|+||+|||||+||+++||+|.++... + +.. . ......|..+|||||||||+|+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~-------~--~~~-------~-~~~~~~d~~~HGT~vAgiia~~~-- 77 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIW-------G--ADF-------V-GGDPDSDCNGHGTHVAGTVGGKT-- 77 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeee-------e--eec-------C-CCCCCCCCCccHHHHHHHHHccc--
Confidence 666789999999999999999999999875211 0 111 0 11125688899999999999863
Q ss_pred CCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCeEEEEeccCCCCCCccCHHHHHHHH
Q 005334 162 GASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-----GVNVMSMSIGGGLTDYYRDTVAIGAFT 235 (701)
Q Consensus 162 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-----gvdVInlSlG~~~~~~~~d~i~~a~~~ 235 (701)
.||||+|+|+.+|+++..+ ...++++++++++++. +++|||||||... ...+..++.+
T Consensus 78 ------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~~~~~~~~~ 141 (255)
T cd04077 78 ------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----STALDAAVAA 141 (255)
T ss_pred ------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CHHHHHHHHH
Confidence 6999999999999998775 6778899999999987 4899999999854 4556667778
Q ss_pred HHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334 236 AMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS 314 (701)
Q Consensus 236 a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~ 314 (701)
+.++|+++|+||||+|... ...+...|++|+|||.+.
T Consensus 142 ~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------------------------------ 179 (255)
T cd04077 142 AVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------------------------------ 179 (255)
T ss_pred HHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------------------------------
Confidence 9999999999999999765 455667899999998421
Q ss_pred CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334 315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 394 (701)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334 395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 474 (701)
Q Consensus 395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 474 (701)
.+..+.||++||.. ||+|||.+|+++..... ..|..++
T Consensus 180 -----------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-----------~~~~~~~ 217 (255)
T cd04077 180 -----------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-----------TATATLS 217 (255)
T ss_pred -----------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-----------CcEEeeC
Confidence 11467899999987 99999999999876421 3789999
Q ss_pred cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 005334 475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYS 512 (701)
Q Consensus 475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 512 (701)
|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 218 GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 218 GTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999974
No 20
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-42 Score=359.75 Aligned_cols=252 Identities=26% Similarity=0.339 Sum_probs=183.8
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|+.+++|+||+||||||||+..|| |....+. +... .. ........|..|||||||+++
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~~~------~~-~~~~~~~~D~~gHGT~vag~i--- 71 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VRVV------LA-PGATDPACDENGHGTGESANL--- 71 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ceee------cC-CCCCCCCCCCCCcchheeece---
Confidence 4569999999999999999999999898 7654321 1110 00 011234568889999999865
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCC----------ccCH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY----------YRDT 228 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~----------~~d~ 228 (701)
.||||+|+|+.+|+++. ...++++||+||++++++|||||||...... ....
T Consensus 72 ---------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~a 133 (298)
T cd07494 72 ---------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKA 133 (298)
T ss_pred ---------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHH
Confidence 69999999999999864 5677999999999999999999999853211 1335
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEE
Q 005334 229 VAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVD 308 (701)
Q Consensus 229 i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~ 308 (701)
+..++.+|.++|++||+||||++. .++...|++|+|||++.+.. +..
T Consensus 134 l~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------------------- 180 (298)
T cd07494 134 LAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------------------- 180 (298)
T ss_pred HHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------------------
Confidence 777788899999999999999974 46888999999999533211 000
Q ss_pred cCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhh
Q 005334 309 AANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKA 388 (701)
Q Consensus 309 ~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~ 388 (701)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcE----------------EecCCcEEecc
Q 005334 389 GDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDL----------------IAPGVNILAGW 452 (701)
Q Consensus 389 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------------~APG~~I~sa~ 452 (701)
......+.|+| . ..+++.|||+ +|||..|.++.
T Consensus 181 ---------------------------~~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~ 229 (298)
T cd07494 181 ---------------------------RASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSC 229 (298)
T ss_pred ---------------------------cccccccCccc---c-cCCCCccCccccccCcCCcccccccccCCCcceeccc
Confidence 00000011111 1 1245667776 47999987655
Q ss_pred cCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 005334 453 TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNG 515 (701)
Q Consensus 453 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~ 515 (701)
..... .......|..++|||||||||||++|||+|++|+|++++||.+|++||+++..
T Consensus 230 ~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 230 AAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 32110 00112479999999999999999999999999999999999999999997743
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.8e-41 Score=351.86 Aligned_cols=241 Identities=33% Similarity=0.432 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+..+|..+ +|+||+|||||+||+++||+|....+. .. + +.......+.|..+|||||||||++.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~---~~-----~-------~~~~~~~~~~d~~~HGT~vagii~~~ 81 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFV---LG-----Y-------DFVDNDSDAMDDNGHGTHVAGIIAAA 81 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcc---cc-----e-------eccCCCCCCCCCCCcHHHHHHHHhCc
Confidence 35689888 999999999999999999998543211 00 1 11112223668889999999999987
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM 237 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~ 237 (701)
.... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||||||... ....+..++..+.
T Consensus 82 ~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~~~~~~~a~ 150 (260)
T cd07484 82 TNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTALQEAINYAW 150 (260)
T ss_pred cCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHHHHHHHHHH
Confidence 4332 2248999999999999998765 77889999999999999999999999853 4456777777888
Q ss_pred HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++|++||+||||+|.....+++..|++|+||+.+.
T Consensus 151 ~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------------------- 185 (260)
T cd07484 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------------------------------- 185 (260)
T ss_pred HCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------------------------------
Confidence 99999999999999988888889999999998421
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.+..+.||++|+.. |++|||.+|++..+.. .|..++|||
T Consensus 186 --------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------------~~~~~~GTS 224 (260)
T cd07484 186 --------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------------DYAYMSGTS 224 (260)
T ss_pred --------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-------------CEEEeeeHH
Confidence 11456789999766 9999999999887653 789999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYST 513 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~ 513 (701)
||||+|||++|||++++| |++.+||++|++||+++
T Consensus 225 ~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 225 MATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999999999999999 99999999999999875
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-41 Score=348.07 Aligned_cols=253 Identities=36% Similarity=0.459 Sum_probs=187.9
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFAS 170 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~ 170 (701)
||+|||||+|||++||+|.+.... |+ ++.. +.........|..+|||||||||+|+.. .
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~-----~~--~~~~-----~~~~~~~~~~d~~~HGT~vAgiia~~~~---------~ 59 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ-----WA--DFDE-----NRRISATEVFDAGGHGTHVSGTIGGGGA---------K 59 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC-----ce--eccC-----CCCCCCCCCCCCCCcHHHHHHHHhcCCC---------C
Confidence 799999999999999999875321 11 1110 0111223456788999999999999854 1
Q ss_pred CceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH-CCCEEEEecCC
Q 005334 171 GTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA-QGIFVSCSAGN 249 (701)
Q Consensus 171 g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~-~Gi~vV~AAGN 249 (701)
+...|+||+|+|+.+|++...++...+++++|+++++.+++|||||||..... .+.+..++....+ +|++||+||||
T Consensus 60 ~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN 137 (254)
T cd07490 60 GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSNQTGALFVVSAGN 137 (254)
T ss_pred CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHHcCCCEEEEeCCC
Confidence 22479999999999999987778889999999999999999999999986533 4555555444443 69999999999
Q ss_pred CCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCC
Q 005334 250 GGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPA 329 (701)
Q Consensus 250 ~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~ 329 (701)
+|......+...|++|+|||.+.+........
T Consensus 138 ~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------------------------------ 169 (254)
T cd07490 138 EGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------------------------------ 169 (254)
T ss_pred CCCCCCCCCccCCceeEEecccccCCccCccC------------------------------------------------
Confidence 99887777788999999999643221000000
Q ss_pred CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 330 ~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHH
Q 005334 410 GTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489 (701)
Q Consensus 410 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 489 (701)
.........+.+|... ....||||.|||.+|+++.... .....|..++|||||||+|||++||
T Consensus 170 -------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aAl 232 (254)
T cd07490 170 -------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAAL 232 (254)
T ss_pred -------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHHH
Confidence 0001112223333332 4678999999999999975321 1123789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhccc
Q 005334 490 LKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 490 l~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|++|+|++.+||++|++||+
T Consensus 233 ~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 233 LAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-41 Score=352.52 Aligned_cols=256 Identities=30% Similarity=0.371 Sum_probs=189.2
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCC---C---CCccceeeEeccc---CC-------ccCCCCCCCCCCCCCChhHHHHh
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGP---V---PRGWKGVWYEEAV---GP-------IDETAESKSPRDDDGHGTHTSTT 154 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~---~---~~~~~g~~~~~~~---~~-------~~~~~~~~~~~D~~gHGThvAgi 154 (701)
||+|||||||||++||+|.+..... + ....++...+... +. ...........+..+||||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgi 80 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGT 80 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHH
Confidence 7999999999999999999764210 0 0000000000000 00 00001122345678999999999
Q ss_pred hcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH----------HcCCeEEEEeccCCCCCC
Q 005334 155 AAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI----------EDGVNVMSMSIGGGLTDY 224 (701)
Q Consensus 155 aAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai----------~~gvdVInlSlG~~~~~~ 224 (701)
|||...++ .| +.||||+|+|+.+|+++..+...+++++|++|++ .++++|||||||.....
T Consensus 81 iaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~- 151 (285)
T cd07496 81 IAAVTNNG---VG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC- 151 (285)
T ss_pred HhCcCCCC---CC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC-
Confidence 99986422 12 3899999999999999887778899999999998 45789999999985432
Q ss_pred ccCHHHHHHHHHHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCce
Q 005334 225 YRDTVAIGAFTAMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSM 303 (701)
Q Consensus 225 ~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~ 303 (701)
...+..++..+.++|++||+||||+|... ...+...|++|+|||.+.
T Consensus 152 -~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------------- 199 (285)
T cd07496 152 -SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------------------------- 199 (285)
T ss_pred -CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------------------------
Confidence 45677777789999999999999999875 556677889999998421
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSAN 383 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 383 (701)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCC--CC
Q 005334 384 VGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPT--GL 461 (701)
Q Consensus 384 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~--~~ 461 (701)
.+.++.||++|+.. ||.|||++|.+......... ..
T Consensus 200 ----------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~ 237 (285)
T cd07496 200 ----------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTG 237 (285)
T ss_pred ----------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccc
Confidence 12567899999976 99999999998876542110 00
Q ss_pred CCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhc
Q 005334 462 ESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 462 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 238 ~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 238 TTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223468899999999999999999999999999999999999986
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.4e-41 Score=355.97 Aligned_cols=277 Identities=29% Similarity=0.329 Sum_probs=198.0
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334 85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS 164 (701)
Q Consensus 85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~ 164 (701)
++++|+||+|||||+|||++||+|.+....... ......... ........|..+|||||||||+|+......
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~-~~~~~~~~~-------~~~~~~~~d~~~HGT~vAgiia~~~~~~~~ 73 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTN-LFHRKIVRY-------DSLSDTKDDVDGHGTHVAGIIAGKGNDSSS 73 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCcCc-cCcccEEEe-------eccCCCCCCCCCCcchhheeeccCCcCCCc
Confidence 578999999999999999999999764221000 000000000 001112237899999999999998644321
Q ss_pred ccccCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH-H-CC
Q 005334 165 LFGFASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM-A-QG 240 (701)
Q Consensus 165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~-~-~G 240 (701)
...+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||......+ .....++.++. + +|
T Consensus 74 -----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~-~~~~~~~~~~~~~~~g 147 (293)
T cd04842 74 -----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY-TLLARAYDQFAYNNPD 147 (293)
T ss_pred -----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc-chHHHHHHHHHHhCCC
Confidence 11348999999999999998765 566778999999999999999999998654212 23333333333 3 89
Q ss_pred CEEEEecCCCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 241 IFVSCSAGNGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 241 i~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
++||+||||+|.... ..+...+++|+|||.+.......
T Consensus 148 ~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------------------------------- 188 (293)
T cd04842 148 ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------------------------------- 188 (293)
T ss_pred eEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------------------------------------
Confidence 999999999997764 56678899999999654322000
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
..|..
T Consensus 189 -~~~~~-------------------------------------------------------------------------- 193 (293)
T cd04842 189 -EGGLG-------------------------------------------------------------------------- 193 (293)
T ss_pred -ccccc--------------------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.......++.||++||+. .+++||||+|||++|+++...... ........|..++|||
T Consensus 194 ----------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS 251 (293)
T cd04842 194 ----------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG----IGDTSDSAYTSKSGTS 251 (293)
T ss_pred ----------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC----CCCCChhheeecCcHH
Confidence 012234789999999987 689999999999999999765310 0111224788999999
Q ss_pred chhhhHhHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 005334 478 MSCPHVSGLAALLKAAH-----P---EWSPSAIKSALMTTAY 511 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~-----P---~~sp~~Ik~~L~~TA~ 511 (701)
||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 252 ~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 252 MATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999985 4 6677899999999985
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.5e-41 Score=343.89 Aligned_cols=239 Identities=29% Similarity=0.405 Sum_probs=189.2
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|||||+||+++||+|.+... ....|. .......+.|..+|||||||||+|+..+. .
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~--~~~~~~------------~~~~~~~~~~~~~HGT~vAgiiag~~~~~--------~ 58 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK--LVPGWN------------FVSNNDPTSDIDGHGTACAGVAAAVGNNG--------L 58 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC--ccCCcc------------ccCCCCCCCCCCCCHHHHHHHHHhccCCC--------c
Confidence 7899999999999999997410 011121 11112245788999999999999985322 2
Q ss_pred ceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCC-CCccCHHHHHHHHHHH-CCCEEEEecC
Q 005334 172 TARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLT-DYYRDTVAIGAFTAMA-QGIFVSCSAG 248 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~-~~~~d~i~~a~~~a~~-~Gi~vV~AAG 248 (701)
.+.|+||+|+|+.+|++...+ +...++.++++++++.+++|||||||.... ..+...+..++..+.+ +|+++|+|||
T Consensus 59 ~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaG 138 (242)
T cd07498 59 GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAG 138 (242)
T ss_pred eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 248999999999999998764 678889999999999999999999998643 3345667777777888 9999999999
Q ss_pred CCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCC
Q 005334 249 NGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIP 328 (701)
Q Consensus 249 N~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~ 328 (701)
|+|......+...|++|+|||.+.
T Consensus 139 N~g~~~~~~pa~~~~vi~Vga~~~-------------------------------------------------------- 162 (242)
T cd07498 139 NSGRSVSSGYAANPSVIAVAATDS-------------------------------------------------------- 162 (242)
T ss_pred CCCCccCCCCcCCCCeEEEEEeCC--------------------------------------------------------
Confidence 999887767788999999998421
Q ss_pred CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEe
Q 005334 329 AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIIS 408 (701)
Q Consensus 329 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 408 (701)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHH
Q 005334 409 RGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAA 488 (701)
Q Consensus 409 ~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 488 (701)
.+.++.||++||.. |++|||.+++......... .......|..++|||||||+|||++|
T Consensus 163 ---------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~A 221 (242)
T cd07498 163 ---------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAA 221 (242)
T ss_pred ---------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHH
Confidence 12467899999987 9999999998885543111 11123478899999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhc
Q 005334 489 LLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 489 Ll~~~~P~~sp~~Ik~~L~~T 509 (701)
||+|++|+|++++||++|++|
T Consensus 222 ll~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 222 LILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=351.48 Aligned_cols=264 Identities=27% Similarity=0.330 Sum_probs=183.2
Q ss_pred CCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCC
Q 005334 84 PTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGA 163 (701)
Q Consensus 84 ~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~ 163 (701)
..+++|+||+|||||+|||++||+|.+..... . +. .+...+.|..||||||||||+|+...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~-------~---------~~-~~~~~~~d~~gHGT~VAgiiag~~~~-- 62 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDITT-------K---------SF-VGGEDVQDGHGHGTHCAGTIFGRDVP-- 62 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcccC-------c---------cc-CCCCCCCCCCCcHHHHHHHHhcccCC--
Confidence 35789999999999999999999998763210 0 00 11122568899999999999998543
Q ss_pred cccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCC----------CccCHHHHH
Q 005334 164 SLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTD----------YYRDTVAIG 232 (701)
Q Consensus 164 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~----------~~~d~i~~a 232 (701)
+...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||..... .....+...
T Consensus 63 -------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~ 135 (297)
T cd07480 63 -------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAY 135 (297)
T ss_pred -------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHH
Confidence 2237999999999999997654 6777899999999999999999999985411 111122222
Q ss_pred HHHH---------------HHCCCEEEEecCCCCCCCCcccc-----CCCceEEecCCccCceeeeEEEcCCCcEEEEEE
Q 005334 233 AFTA---------------MAQGIFVSCSAGNGGPYANSISN-----VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVS 292 (701)
Q Consensus 233 ~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s 292 (701)
...+ .++|++||+||||+|........ ..+++++|++..
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~--------------------- 194 (297)
T cd07480 136 RQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG--------------------- 194 (297)
T ss_pred HHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC---------------------
Confidence 2223 67999999999999865332111 112222222210
Q ss_pred eecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc
Q 005334 293 LYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL 372 (701)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 372 (701)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecc
Q 005334 373 VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGW 452 (701)
Q Consensus 373 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 452 (701)
.......|+++.+. ...||||+|||.+|++++
T Consensus 195 --------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~ 226 (297)
T cd07480 195 --------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGVDIVSAA 226 (297)
T ss_pred --------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCCCeEeec
Confidence 00011222333222 235789999999999987
Q ss_pred cCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCC
Q 005334 453 TGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPF 532 (701)
Q Consensus 453 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 532 (701)
+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+.......... ......+.
T Consensus 227 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~ 286 (297)
T cd07480 227 PGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-------FAPGLDLP 286 (297)
T ss_pred CCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-------CCCCCChh
Confidence 764 7999999999999999999999999999998888888774332210000 02234556
Q ss_pred CCCccccCcc
Q 005334 533 DFGAGHVDPV 542 (701)
Q Consensus 533 ~~G~G~vn~~ 542 (701)
++|+|++++.
T Consensus 287 ~~g~G~~~~~ 296 (297)
T cd07480 287 DRGVGLGLAP 296 (297)
T ss_pred hcCCceeecC
Confidence 8999999875
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-40 Score=342.60 Aligned_cols=246 Identities=30% Similarity=0.424 Sum_probs=189.3
Q ss_pred CCCEEEEEccCCCCCCCCccCCCCCCC-CCcccee-----eEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCC
Q 005334 90 SEVIVGVLDTGVWPEIKSFDDTGMGPV-PRGWKGV-----WYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGA 163 (701)
Q Consensus 90 ~gVvVgVIDtGId~~Hp~f~~~~~~~~-~~~~~g~-----~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~ 163 (701)
+||+|||||||||++||+|.++..... ...+.+. .|......++......++.|..+|||||||||+|+.....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~~~~~ 81 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGI 81 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcCCCCC
Confidence 689999999999999999998632110 0000000 0100000012222344567889999999999999854332
Q ss_pred cccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCE
Q 005334 164 SLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIF 242 (701)
Q Consensus 164 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~ 242 (701)
.+.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.... ...+..++.++.++|++
T Consensus 82 --------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~~~~~~g~i 150 (259)
T cd07473 82 --------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIARAIDAGIL 150 (259)
T ss_pred --------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHHHHHhCCCE
Confidence 248999999999999998776 888899999999999999999999998533 56677778899999999
Q ss_pred EEEecCCCCCCC---Ccccc--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334 243 VSCSAGNGGPYA---NSISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS 317 (701)
Q Consensus 243 vV~AAGN~G~~~---~~~~~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (701)
||+||||+|... ..++. ..|++|+||+.+.
T Consensus 151 vV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------------------------------- 185 (259)
T cd07473 151 FVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------------------------------- 185 (259)
T ss_pred EEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------------------------------
Confidence 999999998762 23333 3578888887321
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS 397 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 397 (701)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334 398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS 477 (701)
Q Consensus 398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 477 (701)
.+.++.||++||. +||+.|||.++++..... .|..++|||
T Consensus 186 --------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~-------------~~~~~~GTS 225 (259)
T cd07473 186 --------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPGG-------------GYGYMSGTS 225 (259)
T ss_pred --------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCCC-------------cEEEeccHh
Confidence 1245568999985 459999999999966543 789999999
Q ss_pred chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
||||+|||++|||+|++|.+++++||++|++||+
T Consensus 226 ~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 226 MATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999985
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-41 Score=347.93 Aligned_cols=244 Identities=22% Similarity=0.229 Sum_probs=176.4
Q ss_pred CCCCCCC-CCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 80 ETLFPTS-EVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 80 ~~~~~~~-~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
..+|+.. ..|+||+|+|||+|||.+||+|.++.... .....+.|..+|||||||||||.
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------~~~~~~~d~~gHGT~VAGiIaa~ 64 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------ISGLTDQADSDHGTAVLGIIVAK 64 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------cCCCCCCCCCCCcchhheeeeee
Confidence 4578774 45899999999999999999998763221 00112568899999999999986
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH----cCCeEEEEeccCCCCC------CccCH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE----DGVNVMSMSIGGGLTD------YYRDT 228 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~----~gvdVInlSlG~~~~~------~~~d~ 228 (701)
.. .+| +.||||+|+|+.+|++. .++++++|.+|++ .++.+||||||..... .+...
T Consensus 65 ~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~ 130 (277)
T cd04843 65 DN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQA 130 (277)
T ss_pred cC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHH
Confidence 31 122 38999999999999975 3456677777776 3577899999986421 12334
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCccc-------------cCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeec
Q 005334 229 VAIGAFTAMAQGIFVSCSAGNGGPYANSIS-------------NVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYS 295 (701)
Q Consensus 229 i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~ 295 (701)
+..++.+|.++|+++|+||||++....... ...|++|+|||...+
T Consensus 131 ~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~---------------------- 188 (277)
T cd04843 131 NFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST---------------------- 188 (277)
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC----------------------
Confidence 455677888999999999999986421110 012456666653110
Q ss_pred CCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc
Q 005334 296 RRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD 375 (701)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 375 (701)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 005334 376 AQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA 455 (701)
Q Consensus 376 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 455 (701)
....++.||++|+.. ||.|||++|+++....
T Consensus 189 -----------------------------------------~~~~~~~fSn~G~~v--------di~APG~~i~s~~~~~ 219 (277)
T cd04843 189 -----------------------------------------TGHTRLAFSNYGSRV--------DVYGWGENVTTTGYGD 219 (277)
T ss_pred -----------------------------------------CCCccccccCCCCcc--------ceEcCCCCeEecCCCC
Confidence 001378899999976 9999999999998764
Q ss_pred CCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 005334 456 VGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----A-HPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 456 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~Ik~~L~~TA~ 511 (701)
..... ......|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 220 ~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 220 LQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 32100 11112357899999999999999999975 3 499999999999999974
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.4e-39 Score=331.02 Aligned_cols=225 Identities=35% Similarity=0.483 Sum_probs=185.2
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCC-CCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAES-KSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
||+|||||+||+++||+|.+.... .| +..... ....|..+|||||||+|+|.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~----~~------------~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~------- 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVG----GA------------NFTGDDNNDYQDGNGHGTHVAGIIAALDNGV------- 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccC----cc------------cccCCCCCCCCCCCCCHHHHHHHHhcccCCC-------
Confidence 799999999999999999875321 11 000111 346678899999999999975332
Q ss_pred CCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecC
Q 005334 170 SGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAG 248 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAG 248 (701)
.+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||... ....+..++..+.++|+++|+|||
T Consensus 58 --~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~giliv~aaG 132 (229)
T cd07477 58 --GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAGILVVAAAG 132 (229)
T ss_pred --ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCCCEEEEecC
Confidence 248999999999999998776 66789999999999999999999999753 234556666788899999999999
Q ss_pred CCCCCCCcc--ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCC
Q 005334 249 NGGPYANSI--SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSL 326 (701)
Q Consensus 249 N~G~~~~~~--~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~ 326 (701)
|++...... +...|++|+||+.+.
T Consensus 133 N~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------------------------------ 158 (229)
T cd07477 133 NSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------------------------------ 158 (229)
T ss_pred CCCCCCCCccCCCCCCCEEEEEeecC------------------------------------------------------
Confidence 999776654 778899999998421
Q ss_pred CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEE
Q 005334 327 IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATI 406 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 406 (701)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHH
Q 005334 407 ISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGL 486 (701)
Q Consensus 407 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 486 (701)
.+.+..||++|+.. |+.|||.+|+++++.. .|..++|||||||+|||+
T Consensus 159 -----------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~ 206 (229)
T cd07477 159 -----------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGV 206 (229)
T ss_pred -----------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHH
Confidence 11455789999865 9999999999987764 688999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 005334 487 AALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 487 aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
+|||+|++|++++.+||++|++|
T Consensus 207 ~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 207 AALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999986
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2e-40 Score=348.03 Aligned_cols=272 Identities=32% Similarity=0.472 Sum_probs=204.5
Q ss_pred EEEEEccCCCCCCCCcc-CCCCCCCCCcccee--eEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 93 IVGVLDTGVWPEIKSFD-DTGMGPVPRGWKGV--WYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 93 vVgVIDtGId~~Hp~f~-~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
+|||||+|||++||+|. .+- . |... .|..... ........|..+|||||||+|+|.. . .+.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-~-----~~~~~~~~~~~~~----~~~~~~~~~~~~HGT~va~ii~~~~-~-~~~---- 64 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-I-----WSKVPGGYNFVDG----NPNPSPSDDDNGHGTHVAGIIAGNG-G-NNG---- 64 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-E-----EEEEEEEEETTTT----BSTTTSSSTSSSHHHHHHHHHHHTT-S-SSS----
T ss_pred CEEEEcCCcCCCChhHccCCc-c-----cccccceeeccCC----CCCcCccccCCCccchhhhhccccc-c-ccc----
Confidence 69999999999999998 431 1 1110 1111111 1223456778899999999999996 2 222
Q ss_pred CCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH-HcCCeEEEEeccCCC--C-CCccCHHHHHHHHHHHCCCEEEE
Q 005334 170 SGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAI-EDGVNVMSMSIGGGL--T-DYYRDTVAIGAFTAMAQGIFVSC 245 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai-~~gvdVInlSlG~~~--~-~~~~d~i~~a~~~a~~~Gi~vV~ 245 (701)
....|+||+|+|+.+|++...+....+++++|++++ +++++|||||||... . ....+.+..+...+.++|+++|+
T Consensus 65 -~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~ 143 (282)
T PF00082_consen 65 -PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVF 143 (282)
T ss_dssp -SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEE
T ss_pred -cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceee
Confidence 223899999999999998777677888999999999 899999999998832 1 22334455666688899999999
Q ss_pred ecCCCCCCCCc---cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccC
Q 005334 246 SAGNGGPYANS---ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCM 322 (701)
Q Consensus 246 AAGN~G~~~~~---~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~ 322 (701)
||||+|+.... .+...+++|+||+.+
T Consensus 144 aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~--------------------------------------------------- 172 (282)
T PF00082_consen 144 AAGNNGPNDDRNISFPASSPNVITVGAVD--------------------------------------------------- 172 (282)
T ss_dssp E--SSSSBTTBTGEBTTTSTTSEEEEEEE---------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---------------------------------------------------
Confidence 99999877643 445567888888732
Q ss_pred CCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCC
Q 005334 323 TGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGP 402 (701)
Q Consensus 323 ~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 402 (701)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhh
Q 005334 403 MATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPH 482 (701)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 482 (701)
....++.||++|+... ++++||||+|||.+|++.++.... ..|..++|||||||+
T Consensus 173 --------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----------~~~~~~~GTS~Aap~ 227 (282)
T PF00082_consen 173 --------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR----------GSYTSFSGTSFAAPV 227 (282)
T ss_dssp --------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES----------EEEEEEESHHHHHHH
T ss_pred --------------cccccccccccccccc-cccccccccccccccccccccccc----------ccccccCcCCchHHH
Confidence 0114578999976543 689999999999999888866421 258899999999999
Q ss_pred HhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 483 VSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 483 VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
|||++|||+|++|+|++.+||.+|++||++..... .......||||+||+.+|++
T Consensus 228 vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 228 VAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999986211 12233488999999999974
No 31
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=340.95 Aligned_cols=282 Identities=30% Similarity=0.426 Sum_probs=229.1
Q ss_pred ceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccCC-----CCCCcccCCCCCCC-------CCC----CCCCCCCCEE
Q 005334 31 NVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELHT-----TRTPEFLGLGKSET-------LFP----TSEVQSEVIV 94 (701)
Q Consensus 31 ~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~gl~~~~~-------~~~----~~~~G~gVvV 94 (701)
.+|+|..-..+.+-+..+++.|-++.++++...+... .+...-|||.++.. -|- ....|+||..
T Consensus 144 ~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvta 223 (501)
T KOG1153|consen 144 RVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTA 223 (501)
T ss_pred chhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEE
Confidence 3888999999999999999999999999988776543 23333455544211 111 2337999999
Q ss_pred EEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCcee
Q 005334 95 GVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTAR 174 (701)
Q Consensus 95 gVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~ 174 (701)
.|+||||+.+||+|.++. .| |.| + .......|++||||||||+|+|.. .
T Consensus 224 Yv~DTGVni~H~dFegRa------~w-Ga~-------i---~~~~~~~D~nGHGTH~AG~I~sKt--------------~ 272 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGRA------IW-GAT-------I---PPKDGDEDCNGHGTHVAGLIGSKT--------------F 272 (501)
T ss_pred EEecccccccccccccce------ec-ccc-------c---CCCCcccccCCCcceeeeeeeccc--------------c
Confidence 999999999999999872 33 221 0 111235789999999999999884 8
Q ss_pred eecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc---------CCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEE
Q 005334 175 GMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED---------GVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVS 244 (701)
Q Consensus 175 GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~---------gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV 244 (701)
|+|.+++|+++||++++| +..+++++++|++++. +..|.|||+|+.. +-++..|+..|.+.||+++
T Consensus 273 GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa 348 (501)
T KOG1153|consen 273 GVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMAVNAASERGIHFA 348 (501)
T ss_pred ccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHHHHHHhhcCeEEE
Confidence 999999999999999998 8999999999999986 4789999999853 4567888889999999999
Q ss_pred EecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCC
Q 005334 245 CSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMT 323 (701)
Q Consensus 245 ~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~ 323 (701)
+||||+-.+.+. .+..+..+|||||++.
T Consensus 349 ~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------------------- 377 (501)
T KOG1153|consen 349 VAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------------------- 377 (501)
T ss_pred EcCCCcchhhhccCcccccccEEeccccc---------------------------------------------------
Confidence 999999877654 4457889999999642
Q ss_pred CCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCe
Q 005334 324 GSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 324 ~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 403 (701)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhH
Q 005334 404 ATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHV 483 (701)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 483 (701)
.+.+|.||+||++. ||-|||++|+|.|.+... .-.++||||||+|||
T Consensus 378 --------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGTSMasPhv 424 (501)
T KOG1153|consen 378 --------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGTSMASPHV 424 (501)
T ss_pred --------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeecccccCcch
Confidence 12789999999999 999999999999998632 567999999999999
Q ss_pred hHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 005334 484 SGLAALLKAAHPE---------WSPSAIKSALMTTAY 511 (701)
Q Consensus 484 AG~aALl~~~~P~---------~sp~~Ik~~L~~TA~ 511 (701)
||++|..++++|. .||.++|..++.-..
T Consensus 425 aG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 425 AGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999883 388888888877554
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.9e-39 Score=341.41 Aligned_cols=149 Identities=26% Similarity=0.317 Sum_probs=106.6
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCcc-ceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGW-KGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFA 169 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~ 169 (701)
.|+|||||||||++||+|.+...... ..+ ....+... ............|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--------- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYS-KNLVPKGGYDGK--EAGETGDINDIVDKLGHGTAVAGQIAANGN--------- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccc-cccccCCCcCCc--cccccCCCCcCCCCCCcHhHHHHHHhcCCC---------
Confidence 48999999999999999996422100 000 00000000 001111123456789999999999998631
Q ss_pred CCceeeecCCCeEEEEEeecCCCC-ChHHHHHHHHHHHHcCCeEEEEeccCCCCCC--------ccCHHHHHHHHHHHCC
Q 005334 170 SGTARGMAAQARVATYKVCWLAGC-FGSDILAGMDKAIEDGVNVMSMSIGGGLTDY--------YRDTVAIGAFTAMAQG 240 (701)
Q Consensus 170 ~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~--------~~d~i~~a~~~a~~~G 240 (701)
..||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||...... ....+..++..+.++|
T Consensus 69 ---~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g 145 (294)
T cd07482 69 ---IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKG 145 (294)
T ss_pred ---CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCC
Confidence 159999999999999987764 8889999999999999999999999754221 1234556666788999
Q ss_pred CEEEEecCCCCCCC
Q 005334 241 IFVSCSAGNGGPYA 254 (701)
Q Consensus 241 i~vV~AAGN~G~~~ 254 (701)
++||+||||+|...
T Consensus 146 ~lvv~AAGN~g~~~ 159 (294)
T cd07482 146 SIVVAAAGNDGLDV 159 (294)
T ss_pred CEEEEeCCCCCccc
Confidence 99999999998653
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-39 Score=331.84 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=117.3
Q ss_pred CCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCccccc
Q 005334 89 QSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGF 168 (701)
Q Consensus 89 G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~ 168 (701)
+++|+|||||||||++||+|.++... +..+..... +.........|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~-------~~~~~~~~~--~~~~~~~~~~d~~gHGT~vAgiI~------------ 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIG-------GKSFSPYEG--DGNKVSPYYVSADGHGTAMARMIC------------ 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccccc-------CCCCCCCCC--CcccCCCCCCCCCCcHHHHHHHHH------------
Confidence 78999999999999999999875221 111111000 000011123578899999999994
Q ss_pred CCCceeeecCCCeEEEEEeecCCC-------CChHHHHHHHHHHHHcCCeEEEEeccCCCCCC---ccCHHHHHHHHHHH
Q 005334 169 ASGTARGMAAQARVATYKVCWLAG-------CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDY---YRDTVAIGAFTAMA 238 (701)
Q Consensus 169 ~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~---~~d~i~~a~~~a~~ 238 (701)
|+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||...... ....+..++.+|.+
T Consensus 61 ------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~ 134 (247)
T cd07491 61 ------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALD 134 (247)
T ss_pred ------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHh
Confidence 689999999999997653 45678999999999999999999999864321 25667888889999
Q ss_pred CCCEEEEecCCCCCCCC-c--cccCCCceEEecCC
Q 005334 239 QGIFVSCSAGNGGPYAN-S--ISNVAPWITTVGAG 270 (701)
Q Consensus 239 ~Gi~vV~AAGN~G~~~~-~--~~~~ap~vitVgAs 270 (701)
+|++||+||||+|.... . .+...|++|+|||.
T Consensus 135 ~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 135 RGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred CCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 99999999999997654 3 34567899999984
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4e-39 Score=340.84 Aligned_cols=248 Identities=21% Similarity=0.198 Sum_probs=179.5
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCC--CCCCChhHHHHhhc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPR--DDDGHGTHTSTTAA 156 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--D~~gHGThvAgiaA 156 (701)
...+|+.+++|+||+|+|||||||++||+|.++.... ..|. ... ......+. |..||||||||||+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~--~~~~-----~~~-----~~~~~~~~~~~~~gHGT~vAgiia 95 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE--ASYD-----FND-----NDPDPTPRYDDDNSHGTRCAGEIA 95 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc--cccc-----ccC-----CCCCCCCccccccccCcceeeEEE
Confidence 3569999999999999999999999999998763221 1111 100 01111222 78899999999999
Q ss_pred ccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCC----CccCHHHHH
Q 005334 157 GSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTD----YYRDTVAIG 232 (701)
Q Consensus 157 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~----~~~d~i~~a 232 (701)
|+..... ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||..... ........+
T Consensus 96 g~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a 165 (297)
T cd04059 96 AVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRA 165 (297)
T ss_pred eecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHH
Confidence 9853221 23899999999999998754 334455566655544 469999999976422 122334444
Q ss_pred HHHHHH-----CCCEEEEecCCCCCCCCc----cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCce
Q 005334 233 AFTAMA-----QGIFVSCSAGNGGPYANS----ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSM 303 (701)
Q Consensus 233 ~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~ 303 (701)
+.++.+ +|++||+||||+|..... .....|++|+|||.+.
T Consensus 166 ~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------------------------------- 214 (297)
T cd04059 166 LENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------------------------------- 214 (297)
T ss_pred HHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------------------------------
Confidence 445554 699999999999973221 1235678888887321
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSAN 383 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 383 (701)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc-------EEecccCCC
Q 005334 384 VGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN-------ILAGWTGAV 456 (701)
Q Consensus 384 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-------I~sa~~~~~ 456 (701)
.+.++.||++|+.. ++.|||.. |+++....
T Consensus 215 ----------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~- 251 (297)
T cd04059 215 ----------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG- 251 (297)
T ss_pred ----------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC-
Confidence 12567899999987 89999987 66654441
Q ss_pred CCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 457 GPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 457 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 252 ---------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 252 ---------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred ---------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 0126788999999999999999999999999999999999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-38 Score=320.79 Aligned_cols=221 Identities=23% Similarity=0.261 Sum_probs=173.3
Q ss_pred CCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCC
Q 005334 91 EVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFAS 170 (701)
Q Consensus 91 gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~ 170 (701)
||+|||||||||++||+|.+..... .. +. .. ..........|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~-----~~--~~--~~--~~~~~~~~~~d~~gHGT~vAgiia~~------------ 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG-----EV--TI--DL--EIIVVSAEGGDKDGHGTACAGIIKKY------------ 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc-----cc--cc--cc--ccccCCCCCCCCCCcHHHHHHHHHcc------------
Confidence 7999999999999999999763221 00 00 00 01122334568899999999999753
Q ss_pred CceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCC
Q 005334 171 GTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGN 249 (701)
Q Consensus 171 g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN 249 (701)
+|+++|+.+|+++..+ +...++++||+|++++|++|||||||..... ....+..++.++.++|+++|+||||
T Consensus 58 ------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~l~V~aagN 130 (222)
T cd07492 58 ------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGGIIVAAAPN 130 (222)
T ss_pred ------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5999999999998776 7888999999999999999999999986432 2345667777888999999999999
Q ss_pred CCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCC
Q 005334 250 GGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPA 329 (701)
Q Consensus 250 ~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~ 329 (701)
++..... +...|.+|+|++...++
T Consensus 131 ~~~~~~~-Pa~~~~vi~V~~~~~~~------------------------------------------------------- 154 (222)
T cd07492 131 NNDIGTP-PASFPNVIGVKSDTADD------------------------------------------------------- 154 (222)
T ss_pred CCCCCCC-CccCCceEEEEecCCCC-------------------------------------------------------
Confidence 9865433 56678888888732110
Q ss_pred CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 330 KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 330 ~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHH
Q 005334 410 GTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAAL 489 (701)
Q Consensus 410 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 489 (701)
.. +.+++ ++|+.|||.+|+++++.. .|..++|||||||+|||++||
T Consensus 155 ----------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~Al 200 (222)
T cd07492 155 ----------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVAL 200 (222)
T ss_pred ----------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHH
Confidence 00 11122 449999999999987763 789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhccc
Q 005334 490 LKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 490 l~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
|+|++|+|+++|||++|++||+
T Consensus 201 l~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 201 LLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.6e-38 Score=326.42 Aligned_cols=242 Identities=28% Similarity=0.297 Sum_probs=185.5
Q ss_pred CCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccc
Q 005334 88 VQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFG 167 (701)
Q Consensus 88 ~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G 167 (701)
+|+||+|+|||+||+++||+|.+.........+ ..........|..+|||||||+|+|+...
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~HGT~vagiiag~~~~------ 62 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVA------------VNDAGYASNGDGDSHGTHVAGVIAAARDG------ 62 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccc------------cccccCCCCCCCCChHHHHHHHHhcCcCC------
Confidence 599999999999999999999986432111000 00001234567889999999999998543
Q ss_pred cCCCceeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHHcCCeEEEEeccCCCCC------------CccCHHHHHH
Q 005334 168 FASGTARGMAAQARVATYKVCWLAG--CFGSDILAGMDKAIEDGVNVMSMSIGGGLTD------------YYRDTVAIGA 233 (701)
Q Consensus 168 ~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~------------~~~d~i~~a~ 233 (701)
....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||..... .....+....
T Consensus 63 ---~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (267)
T cd04848 63 ---GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAAL 139 (267)
T ss_pred ---CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHH
Confidence 2348999999999999998764 6667889999999999999999999986522 2455666777
Q ss_pred HHHHHCCCEEEEecCCCCCCCCcc---------ccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCcee
Q 005334 234 FTAMAQGIFVSCSAGNGGPYANSI---------SNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304 (701)
Q Consensus 234 ~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~ 304 (701)
..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 140 ~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------------------------ 189 (267)
T cd04848 140 ARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------------------------ 189 (267)
T ss_pred HHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------------------------------
Confidence 788899999999999998654322 23456778887743211
Q ss_pred eEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEe
Q 005334 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANV 384 (701)
Q Consensus 305 ~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 384 (701)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceec--ccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAA--FSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLE 462 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 462 (701)
.... ||++|+.. -.++++|||.+|+++.+...
T Consensus 190 -----------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~------ 223 (267)
T cd04848 190 -----------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG------ 223 (267)
T ss_pred -----------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCCC------
Confidence 1222 47777654 24479999999999876311
Q ss_pred CCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 005334 463 SDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAY 511 (701)
Q Consensus 463 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 511 (701)
..|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 224 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 -----NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 26889999999999999999999999999999999999999985
No 37
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=326.58 Aligned_cols=237 Identities=24% Similarity=0.281 Sum_probs=179.0
Q ss_pred CCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCC-C--CChHHHHHHHHHHHHcCCeEEEEeccCCC
Q 005334 145 DGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA-G--CFGSDILAGMDKAIEDGVNVMSMSIGGGL 221 (701)
Q Consensus 145 ~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~ai~~gvdVInlSlG~~~ 221 (701)
.-|||||||||+|+..... ...|+||+|+|+++++.+.. | -+...+.+|+..+++..+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975542 24799999999999997643 2 45567899999999999999999999765
Q ss_pred -CCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCcccc---CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCC
Q 005334 222 -TDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISN---VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRR 297 (701)
Q Consensus 222 -~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~ 297 (701)
.+.....++..-..+.++|+++|+||||+||...+++. ..-.+|.|||.-.. ..
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp----------------------~m 439 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP----------------------GM 439 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH----------------------HH
Confidence 34445556655555568999999999999998877664 33467777772100 00
Q ss_pred CCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccccc
Q 005334 298 PLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQ 377 (701)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 377 (701)
+ ...|.+.
T Consensus 440 m--~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 440 M--QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred H--Hhhhhhh----------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred ccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCC
Q 005334 378 LLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVG 457 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 457 (701)
.+-......+|||||+. ||-+--.|.|||+.|-+--.-.
T Consensus 448 -------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t-- 486 (1304)
T KOG1114|consen 448 -------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT-- 486 (1304)
T ss_pred -------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh--
Confidence 01123577899999999 7889999999999886532111
Q ss_pred CCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCC
Q 005334 458 PTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFD 533 (701)
Q Consensus 458 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 533 (701)
...-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.. .+|.
T Consensus 487 ---------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~fa 544 (1304)
T KOG1114|consen 487 ---------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFA 544 (1304)
T ss_pred ---------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhc
Confidence 12457899999999999999999865 477899999999999999998632 4689
Q ss_pred CCccccCccccCC
Q 005334 534 FGAGHVDPVAALD 546 (701)
Q Consensus 534 ~G~G~vn~~~A~~ 546 (701)
+|.|+|++.+|.+
T Consensus 545 qG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYE 557 (1304)
T ss_pred cCcceeehhHHHH
Confidence 9999999999986
No 38
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=306.37 Aligned_cols=337 Identities=25% Similarity=0.384 Sum_probs=249.3
Q ss_pred cHHHHHHHhhcccc-c------cccEEEEecceeeEEEEEeC-----HHHHHHhhcCCCeEEEEeCceeccCC-------
Q 005334 7 DHFEWYDSSLKSVS-A------SAAMLYTYKNVIHGFSTRLT-----AKEAESLQKQPGIVSVLPEVRYELHT------- 67 (701)
Q Consensus 7 ~h~~~~~~~l~~~~-~------~~~~~~~y~~~~ng~s~~l~-----~~~~~~L~~~p~V~~V~~~~~~~~~~------- 67 (701)
.|++++++-|.... . ....--.|-.-|.-+-++-. .-+++.|..+|.|+.|.|.+.+....
T Consensus 64 ~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~ 143 (1033)
T KOG4266|consen 64 DRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKK 143 (1033)
T ss_pred HHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccCC
Confidence 47788888776322 1 12222334444555555433 23578999999999999987654310
Q ss_pred -----CCCCcc------------------cC--C----------CCCCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCC
Q 005334 68 -----TRTPEF------------------LG--L----------GKSETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTG 112 (701)
Q Consensus 68 -----~~s~~~------------------~g--l----------~~~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~ 112 (701)
+.+-.+ ++ | -++.-+|+.|++|++|+|||.|||+.-+||.|+..-
T Consensus 144 ~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvK 223 (1033)
T KOG4266|consen 144 RPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVK 223 (1033)
T ss_pred CCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccchh
Confidence 000000 00 0 002449999999999999999999999999998541
Q ss_pred CCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC
Q 005334 113 MGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG 192 (701)
Q Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g 192 (701)
....|. . .....|..||||.|||+|||.. .-.|.||++.|+++|||-+.-
T Consensus 224 ---ERTNWT--------------N-E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q 273 (1033)
T KOG4266|consen 224 ---ERTNWT--------------N-EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ 273 (1033)
T ss_pred ---hhcCCc--------------C-ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce
Confidence 011231 1 1245678899999999999884 137999999999999997765
Q ss_pred -CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCCCccccCCC--ceEEecC
Q 005334 193 -CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYANSISNVAP--WITTVGA 269 (701)
Q Consensus 193 -~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgA 269 (701)
.+.+.+++|+.+|+...+||+|+|+|++ ++.+.++-.-+.....++|++|.|+||+||-.++..|.+. .++.||.
T Consensus 274 VSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG 351 (1033)
T KOG4266|consen 274 VSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG 351 (1033)
T ss_pred eehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc
Confidence 8899999999999999999999999995 3445566666667888999999999999998887766432 2333332
Q ss_pred CccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhh
Q 005334 270 GTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKG 349 (701)
Q Consensus 270 st~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~ 349 (701)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCC
Q 005334 350 VEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGP 429 (701)
Q Consensus 350 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP 429 (701)
.+..+.+|.|||||-
T Consensus 352 -----------------------------------------------------------------IdfdD~IA~FSSRGM 366 (1033)
T KOG4266|consen 352 -----------------------------------------------------------------IDFDDHIASFSSRGM 366 (1033)
T ss_pred -----------------------------------------------------------------ccccchhhhhccCCc
Confidence 123458999999997
Q ss_pred CCC----CCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHh----hCCCCCHHH
Q 005334 430 NPI----TPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPSA 501 (701)
Q Consensus 430 ~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ 501 (701)
+.. .-||+||||++-|.+|....... +...+||||.|+|.|||+++||.+ +.--+.|+.
T Consensus 367 tTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPAS 433 (1033)
T KOG4266|consen 367 TTWELPHGYGRMKPDIVTYGRDVMGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPAS 433 (1033)
T ss_pred ceeecCCcccccCCceEeeccccccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHH
Confidence 653 35999999999999988764443 677899999999999999999976 234468999
Q ss_pred HHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334 502 IKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD 546 (701)
Q Consensus 502 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 546 (701)
+|.+|+..|.++.. ..-|.||+|++|+.++.+
T Consensus 434 mKQaLiegA~kLpg-------------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 434 MKQALIEGAAKLPG-------------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHhHHhhCCC-------------CchhhccCcchhHHHHHH
Confidence 99999999998853 234799999999998876
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-32 Score=281.47 Aligned_cols=194 Identities=21% Similarity=0.152 Sum_probs=140.7
Q ss_pred CCCCCCCChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHH--HHcCCeEEEEec
Q 005334 140 SPRDDDGHGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKA--IEDGVNVMSMSI 217 (701)
Q Consensus 140 ~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--i~~gvdVInlSl 217 (701)
...|.+||||||||||||. .|++|+++|+..++.. .....+..+++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3568999999999999997 4667999998765522 1233466778888 567999999999
Q ss_pred cCCCCCC------ccCHHHHHHHHHHHC-CCEEEEecCCCCCCC-----CccccCCCceEEecCCccCceeeeEEEcCCC
Q 005334 218 GGGLTDY------YRDTVAIGAFTAMAQ-GIFVSCSAGNGGPYA-----NSISNVAPWITTVGAGTLDRNFPTYVSLGNG 285 (701)
Q Consensus 218 G~~~~~~------~~d~i~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g 285 (701)
|...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||......
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 223456666666666 999999999999743 223456788999998432110
Q ss_pred cEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeec
Q 005334 286 KSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNT 365 (701)
Q Consensus 286 ~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 365 (701)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCC--CCCCCCCCCCCCcEEe
Q 005334 366 DSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSR--GPNPITPEILKPDLIA 443 (701)
Q Consensus 366 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~lKPDI~A 443 (701)
....+.||++ +|+. .+..||||+|
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~A 189 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVA 189 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCC--CCCceeEEEE
Confidence 0022345554 4443 5788999999
Q ss_pred cCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 005334 444 PGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWS------PSAIKSALMTTA 510 (701)
Q Consensus 444 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------p~~Ik~~L~~TA 510 (701)
||++|++ +. ..|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 190 PG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 190 PGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9999998 22 2688999999999999999999999987665 456777777653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6.6e-31 Score=267.70 Aligned_cols=234 Identities=35% Similarity=0.496 Sum_probs=175.2
Q ss_pred CEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCcccccCCC
Q 005334 92 VIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGASLFGFASG 171 (701)
Q Consensus 92 VvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~~~G~~~g 171 (701)
|+|+|||+||+++||+|...... ....+. .. ..........+..+||||||++|++......
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~~HGt~va~~i~~~~~~~~-------- 62 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG-GDGGND-----DD----DNENGPTDPDDGNGHGTHVAGIIAASANNGG-------- 62 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC-cccccc-----cc----cCcCCCCCCCCCCCcHHHHHHHHhcCCCCCC--------
Confidence 68999999999999987211000 000000 00 0001112456788999999999999854321
Q ss_pred ceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH-HcCCeEEEEeccCCCCCCccCHHHHHHHHHHHC-CCEEEEecC
Q 005334 172 TARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAI-EDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMAQ-GIFVSCSAG 248 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai-~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~~-Gi~vV~AAG 248 (701)
..|+||+++|+.+|+....+ .....+++++++++ +.+++|||||||..... ....+...+..+.++ |+++|+|+|
T Consensus 63 -~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaG 140 (241)
T cd00306 63 -GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAG 140 (241)
T ss_pred -CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecC
Confidence 27999999999999987765 67788999999999 89999999999986443 345566666677777 999999999
Q ss_pred CCCCCCC---ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCC
Q 005334 249 NGGPYAN---SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGS 325 (701)
Q Consensus 249 N~G~~~~---~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~ 325 (701)
|.+.... ..+...|++|+||+.+.+..
T Consensus 141 N~~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------------------- 170 (241)
T cd00306 141 NDGPDGGTNIGYPAASPNVIAVGAVDRDGT-------------------------------------------------- 170 (241)
T ss_pred CCCCCCCCCccCCccCCceEEEEecCcCCC--------------------------------------------------
Confidence 9998776 46778899999998532211
Q ss_pred CCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEE
Q 005334 326 LIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMAT 405 (701)
Q Consensus 326 ~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 405 (701)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceeecccCCCce-ecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeeccccchhhhHh
Q 005334 406 IISRGTQLGIQPSPVV-AAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVS 484 (701)
Q Consensus 406 i~~~~~~~~~~~~~~~-a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 484 (701)
. ..++++| .|||+.|||.++...... ....+..++|||||||+||
T Consensus 171 ---------------~~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~va 216 (241)
T cd00306 171 ---------------PASPSSNGG--------AGVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVA 216 (241)
T ss_pred ---------------ccCCcCCCC--------CCceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHH
Confidence 1 1233333 467999999999875111 1137899999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhc
Q 005334 485 GLAALLKAAHPEWSPSAIKSALMTT 509 (701)
Q Consensus 485 G~aALl~~~~P~~sp~~Ik~~L~~T 509 (701)
|++|||+|++|++++.++|++|++|
T Consensus 217 G~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 217 GVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-23 Score=232.73 Aligned_cols=248 Identities=33% Similarity=0.455 Sum_probs=184.6
Q ss_pred CCCCCC--CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCC--CCCCCCCChhHHHHhh
Q 005334 80 ETLFPT--SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESK--SPRDDDGHGTHTSTTA 155 (701)
Q Consensus 80 ~~~~~~--~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~D~~gHGThvAgia 155 (701)
...|.. +.+|+||.|+|||+||+..||+|.+..... .+...... ...|..+|||||++++
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~d~~~hGt~vag~i 193 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG----------------GDFVDGDPEPPFLDDNGHGTHVAGTI 193 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc----------------cccccCCCCCCCCCCCCCcceeeeee
Confidence 457777 899999999999999999999998763210 01111111 2578999999999999
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCC-C-CChHHHHHHHHHHHHcC--CeEEEEeccCCCCCCccCHHHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA-G-CFGSDILAGMDKAIEDG--VNVMSMSIGGGLTDYYRDTVAI 231 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~ai~~g--vdVInlSlG~~~~~~~~d~i~~ 231 (701)
++....+ .....|++|+++++.+|++... | ....+++++|+++++.+ +++||||+|..........+..
T Consensus 194 a~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~~~~~~~~~ 266 (508)
T COG1404 194 AAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGD 266 (508)
T ss_pred eeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccccccHHHHH
Confidence 9842111 1124899999999999999866 5 67778899999999999 9999999998522233445556
Q ss_pred HHHHHHHCC-CEEEEecCCCCCCCCc----cccCC--CceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCcee
Q 005334 232 GAFTAMAQG-IFVSCSAGNGGPYANS----ISNVA--PWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMV 304 (701)
Q Consensus 232 a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~ 304 (701)
++..++..| +++|+++||.|..... .+... +.+++|+|..
T Consensus 267 a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------------------------------- 313 (508)
T COG1404 267 ALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------------------------------- 313 (508)
T ss_pred HHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------------------------------
Confidence 666777777 9999999999865421 11111 2344444421
Q ss_pred eEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEe
Q 005334 305 PIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANV 384 (701)
Q Consensus 305 ~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 384 (701)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEe-----cccCCCCCC
Q 005334 385 GEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILA-----GWTGAVGPT 459 (701)
Q Consensus 385 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~ 459 (701)
..+.++.||++|+.. +.++.|||.+|.+ .+.+..
T Consensus 314 --------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~--- 352 (508)
T COG1404 314 --------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG--- 352 (508)
T ss_pred --------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeeeCCc---
Confidence 123778899999752 2299999999998 433321
Q ss_pred CCCCCcccceeEeeccccchhhhHhHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 005334 460 GLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPSAIKSALMTTAYS 512 (701)
Q Consensus 460 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~ 512 (701)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 353 --------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 353 --------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred --------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 2499999999999999999999999999 89999999998888874
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=1.1e-17 Score=181.16 Aligned_cols=101 Identities=28% Similarity=0.272 Sum_probs=81.7
Q ss_pred ceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHc---CCeEEEEeccCCCCC---CccCHHHHHHHHHHHCCCEEEE
Q 005334 172 TARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIED---GVNVMSMSIGGGLTD---YYRDTVAIGAFTAMAQGIFVSC 245 (701)
Q Consensus 172 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~---gvdVInlSlG~~~~~---~~~d~i~~a~~~a~~~Gi~vV~ 245 (701)
.+.||||+|+|+.|++++.. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678889999887 999999999986532 2345677788889999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEecCCccCce
Q 005334 246 SAGNGGPYAN-----------SISNVAPWITTVGAGTLDRN 275 (701)
Q Consensus 246 AAGN~G~~~~-----------~~~~~ap~vitVgAst~~~~ 275 (701)
|+||+|.... ..+..+|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 34678999999999876544
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-18 Score=175.97 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCC--C--CCCChhHHHHhh
Q 005334 80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPR--D--DDGHGTHTSTTA 155 (701)
Q Consensus 80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--D--~~gHGThvAgia 155 (701)
..+|..+++|++|.++|+|.||||-||+++.+--. ...|+... .+++..|+ | .+.|||.|||-+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~nyna-------easydfss-----ndpfpyprytddwfnshgtrcagev 218 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNA-------EASYDFSS-----NDPFPYPRYTDDWFNSHGTRCAGEV 218 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcccCc-------eeeccccc-----CCCCCCCcccchhhhccCcccccee
Confidence 45999999999999999999999999999865100 00122211 12222232 2 478999999988
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCCCCc----cCHHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLTDYY----RDTVA 230 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~~~----~d~i~ 230 (701)
++...++. .| .|||.+.++..+|+++. .+..|+++|-..-.+ ..++|.+-|||.....-. .+...
T Consensus 219 ~aardngi--cg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgprnatm 288 (629)
T KOG3526|consen 219 VAARDNGI--CG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATM 288 (629)
T ss_pred eeeccCCc--ee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHH
Confidence 87765443 23 69999999999999864 455666665322211 357899999997542221 12222
Q ss_pred HHHHHHHH-----CCCEEEEecCCCCCC
Q 005334 231 IGAFTAMA-----QGIFVSCSAGNGGPY 253 (701)
Q Consensus 231 ~a~~~a~~-----~Gi~vV~AAGN~G~~ 253 (701)
.++-+-+. .|-+.|.|.|..|.+
T Consensus 289 raiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 289 RAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred HHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 22223232 356899999988854
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.41 E-value=2.5e-12 Score=118.06 Aligned_cols=123 Identities=51% Similarity=0.805 Sum_probs=100.9
Q ss_pred EEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC-chhhhhHHHhHcCce
Q 005334 280 VSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN-SRVEKGVEVKDAGGV 358 (701)
Q Consensus 280 ~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~ 358 (701)
+.|+||+++.|++++++.. ..+++++............|.+..++..+++||||+|+++.+ .+.++..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6799999999999997553 456777644433334557899888888999999999999999 889999999999999
Q ss_pred EEEEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEE
Q 005334 359 GMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMAT 405 (701)
Q Consensus 359 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 405 (701)
|+|++++.............+|.+.|+..++..|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654433334568999999999999999999998777654
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.30 E-value=1.9e-11 Score=114.74 Aligned_cols=117 Identities=29% Similarity=0.340 Sum_probs=93.4
Q ss_pred CceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccccc-cccc
Q 005334 301 GSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVAD-AQLL 379 (701)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~ 379 (701)
....++++.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+.......... ...+
T Consensus 25 ~~~~~lv~~g~---------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 25 GKTYELVDAGL---------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CcEEEEEEccC---------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 45778888643 3344455678999999999999999999999999999999999887543222222 2568
Q ss_pred ceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCC
Q 005334 380 PSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNP 431 (701)
Q Consensus 380 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 431 (701)
|++.|+..+|..|++|+++ +++|.+..+.. ..+++.++.||||||..
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 67777777666 56788999999999974
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.67 E-value=3e-07 Score=83.83 Aligned_cols=97 Identities=24% Similarity=0.305 Sum_probs=76.3
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc---ccc--ccc
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE---LVA--DAQ 377 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~--~~~ 377 (701)
.-++++... .....|.+..+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+...... ... ...
T Consensus 18 ~~~lv~~~~----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 456666432 23478988888778899999999999999999999999999999999987663211 111 345
Q ss_pred ccceEEechhhHHHHHHhHhcCCCCe
Q 005334 378 LLPSANVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~~~~~ 403 (701)
.+|+++|+..+|+.|++++..+.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776433
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=3.9e-08 Score=86.32 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=64.5
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCC----CCccccccccccceEEechhhHHHHH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS----YGEELVADAQLLPSANVGEKAGDAIK 393 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 393 (701)
...|....+...+++||||||+||.|.+.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677777888999999999999999999999999999999999999211 12233455688999999999999999
Q ss_pred HhH
Q 005334 394 NYI 396 (701)
Q Consensus 394 ~~~ 396 (701)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 48
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.61 E-value=1.9e-07 Score=84.54 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=69.6
Q ss_pred CCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccc----ccccccceEEechhhHHHH
Q 005334 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELV----ADAQLLPSANVGEKAGDAI 392 (701)
Q Consensus 317 ~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 392 (701)
....|.+..+. .+++|||+||+|+.|.+.+|..+++++||.|+|++|+........ .....+|+++++..+|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 34679888774 459999999999999999999999999999999998876422211 1235799999999999999
Q ss_pred HHhHhcCCCCe
Q 005334 393 KNYISSDPGPM 403 (701)
Q Consensus 393 ~~~~~~~~~~~ 403 (701)
++|+..+...+
T Consensus 105 ~~~l~~g~~v~ 115 (118)
T cd04818 105 KAALAAGGTVT 115 (118)
T ss_pred HHHHhcCCcEE
Confidence 99998776443
No 49
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.60 E-value=5.7e-08 Score=81.78 Aligned_cols=62 Identities=45% Similarity=0.770 Sum_probs=49.4
Q ss_pred cccHHHHHHHhhccc-----cccccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccC
Q 005334 5 FNDHFEWYDSSLKSV-----SASAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYELH 66 (701)
Q Consensus 5 ~~~h~~~~~~~l~~~-----~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 66 (701)
+..|.+|+.+++.+. ....+++|+|+..||||+++++++++++|+++|+|++|+||+.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 567889999876653 23789999999999999999999999999999999999999998764
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.58 E-value=2.6e-07 Score=82.84 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc----cccccc
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE----LVADAQ 377 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~ 377 (701)
..+|++... ....|....+.+.+++|||+|++||.|+|.+|..+++++||.++|++|+...... ......
T Consensus 20 ~~~~~~~~~------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 356666643 4567998888888899999999999999999999999999999999998753111 112446
Q ss_pred ccceEEechhhHHHHHHhHhcC
Q 005334 378 LLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 378 ~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
.||+++|+..+|+.|.+.+...
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccC
Confidence 7899999999999999887643
No 51
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.58 E-value=3.3e-07 Score=82.58 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC-cc-c--c----ccccccceEEechhhH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG-EE-L--V----ADAQLLPSANVGEKAG 389 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-~--~----~~~~~~p~~~i~~~~g 389 (701)
...|.+.. +..+++|||+|++||.|.|.+|..+++++||.++|++|+.... .. + . .....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 3567899999999999999999999999999999999876541 11 1 1 1235799999999999
Q ss_pred HHHHHhHhcCCCCeEEEE
Q 005334 390 DAIKNYISSDPGPMATII 407 (701)
Q Consensus 390 ~~l~~~~~~~~~~~~~i~ 407 (701)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999888776653
No 52
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.56 E-value=3.3e-07 Score=84.91 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCccCCCCC--CCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCc-cc---cccccccceEEechhhHH
Q 005334 317 SGNLCMTGSL--IPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGE-EL---VADAQLLPSANVGEKAGD 390 (701)
Q Consensus 317 ~~~~C~~~~~--~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 390 (701)
....|.+... ++.++.|+|+|++||.|+|.+|..+++++||.++|++|+...+. .+ ......+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3567987776 56789999999999999999999999999999999999876221 11 122346899999999999
Q ss_pred HHHHhHhcCCCCeEE
Q 005334 391 AIKNYISSDPGPMAT 405 (701)
Q Consensus 391 ~l~~~~~~~~~~~~~ 405 (701)
.|++++..+.+.+.+
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887665543
No 53
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.50 E-value=4.4e-07 Score=82.96 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCccCCCC--CCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCc-cc-c----ccccccceEEechhhH
Q 005334 318 GNLCMTGS--LIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGE-EL-V----ADAQLLPSANVGEKAG 389 (701)
Q Consensus 318 ~~~C~~~~--~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~-~----~~~~~~p~~~i~~~~g 389 (701)
...|..+. +...+++|||+||+++.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..+|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 45687776 677889999999999999999999999999999999998876321 11 1 1346799999999999
Q ss_pred HHHHHhHhcCCCC
Q 005334 390 DAIKNYISSDPGP 402 (701)
Q Consensus 390 ~~l~~~~~~~~~~ 402 (701)
..|++|+.++.+.
T Consensus 110 ~~l~~~~~~~~~v 122 (126)
T cd00538 110 EALLSLLEAGKTV 122 (126)
T ss_pred HHHHHHHhcCCce
Confidence 9999999876543
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.44 E-value=8e-07 Score=81.29 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCC-----ccc--c-----ccccccceEEec
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYG-----EEL--V-----ADAQLLPSANVG 385 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~--~-----~~~~~~p~~~i~ 385 (701)
...|.+... +..++|||+|++||.|+|.+|..+++++||.++|++|+.... ..+ . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467976543 557899999999999999999999999999999999865432 111 1 124579999999
Q ss_pred hhhHHHHHHhHhcCCCCe
Q 005334 386 EKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~ 403 (701)
..+|+.|++++..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.41 E-value=2.3e-06 Score=78.22 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=66.8
Q ss_pred CCccCCCCCC--CC----CccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-c----------cccccccc
Q 005334 318 GNLCMTGSLI--PA----KVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-L----------VADAQLLP 380 (701)
Q Consensus 318 ~~~C~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~p 380 (701)
...|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+...... . ..+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 3568665432 22 377899999999999999999999999999999998654211 1 11234699
Q ss_pred eEEechhhHHHHHHhHhcCCCCeE
Q 005334 381 SANVGEKAGDAIKNYISSDPGPMA 404 (701)
Q Consensus 381 ~~~i~~~~g~~l~~~~~~~~~~~~ 404 (701)
+++|+..+|+.|+..+..+...+.
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999987765443
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.37 E-value=1.7e-06 Score=78.80 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=72.6
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc----ccccccc
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE----LVADAQL 378 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~~ 378 (701)
.-++++.. ...|.+..+ +.+++|||+|++|+.|.+.+|..+++++||.|+|++|+...+.. ...+...
T Consensus 23 ~g~lv~~~-------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 23 TGPLVVVP-------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred EEEEEEeC-------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCE
Confidence 45666642 246876554 35799999999999999999999999999999999988732211 1123457
Q ss_pred cceEEechhhHHHHHHhHhcCCCCeE
Q 005334 379 LPSANVGEKAGDAIKNYISSDPGPMA 404 (701)
Q Consensus 379 ~p~~~i~~~~g~~l~~~~~~~~~~~~ 404 (701)
+|++.|+..+|+.|++.+.++.+.++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999988776544
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.31 E-value=2.9e-06 Score=79.05 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=66.9
Q ss_pred CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcccc------ccccccceEEechhhHHH
Q 005334 318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELV------ADAQLLPSANVGEKAGDA 391 (701)
Q Consensus 318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 391 (701)
...|.+.. .+++|||+|++||.|++.+|..+++++||.++|++|+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46797654 478999999999999999999999999999999998765321111 113579999999999999
Q ss_pred HHHhHhcCCCCe
Q 005334 392 IKNYISSDPGPM 403 (701)
Q Consensus 392 l~~~~~~~~~~~ 403 (701)
|++.+..+...+
T Consensus 125 L~~~l~~g~~Vt 136 (139)
T cd02132 125 LNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHcCCcEE
Confidence 999998776543
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.29 E-value=2.5e-06 Score=78.71 Aligned_cols=74 Identities=27% Similarity=0.510 Sum_probs=60.4
Q ss_pred CCCCCccceEEEEecCCCc-----hhhhhHHHhHcCceEEEEeecCCC-C-c-cccc---cccccceEEechhhHHHHHH
Q 005334 326 LIPAKVAGKIVVCDRGGNS-----RVEKGVEVKDAGGVGMILTNTDSY-G-E-ELVA---DAQLLPSANVGEKAGDAIKN 394 (701)
Q Consensus 326 ~~~~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~-~-~~~~---~~~~~p~~~i~~~~g~~l~~ 394 (701)
+...+++|||+|++||.|. |.+|.++++++||.|+|++|+... + . .... ....||++.++..+|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 3456799999999999999 999999999999999999998722 1 1 1112 14689999999999999999
Q ss_pred hHhcC
Q 005334 395 YISSD 399 (701)
Q Consensus 395 ~~~~~ 399 (701)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88544
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.28 E-value=3.4e-06 Score=75.92 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=65.3
Q ss_pred CCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc--c----cccccccceEEechhhHH
Q 005334 317 SGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE--L----VADAQLLPSANVGEKAGD 390 (701)
Q Consensus 317 ~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~----~~~~~~~p~~~i~~~~g~ 390 (701)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|++|+...... . ......+|+++++..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679665 567899999999999999999999999999999999987653211 1 123457999999999999
Q ss_pred HHHHhHhcC
Q 005334 391 AIKNYISSD 399 (701)
Q Consensus 391 ~l~~~~~~~ 399 (701)
.|+.++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999887543
No 60
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4e-06 Score=92.18 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334 79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS 158 (701)
Q Consensus 79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~ 158 (701)
+...|..+++|.++.|+|.|+|+...||+..+.- . +...|. .... -+......+......|||-|++-.+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~-~-~~~s~d-----~~~~-~~~p~~~~~~~~~~~~g~~Ca~~~a~~ 93 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNY-D-PLGSYD-----VNRH-DNDPEPRCDGTNENKHGTRCAGCVAAR 93 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCccccccc-C-cceeEe-----eecC-CCCcccccCCCCccccCCCCCcccccc
Confidence 4679999999999999999999999999998642 1 111111 1100 011112222334678999999999887
Q ss_pred ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCCC----CccCHHHHHH
Q 005334 159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLTD----YYRDTVAIGA 233 (701)
Q Consensus 159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~----~~~d~i~~a~ 233 (701)
.... --..|+++++++..++++.. ...+...+...... .-+++-+.|||.+... .-......+.
T Consensus 94 ~~~~--------~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~ 162 (431)
T KOG3525|consen 94 ANNL--------TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREAL 162 (431)
T ss_pred cCCC--------cCCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhh
Confidence 5222 12379999999999988752 11222222222222 3578999999976421 1112222222
Q ss_pred HH-----HHHCCCEEEEecCCCCCCCC
Q 005334 234 FT-----AMAQGIFVSCSAGNGGPYAN 255 (701)
Q Consensus 234 ~~-----a~~~Gi~vV~AAGN~G~~~~ 255 (701)
+. ...+|-+.|++.||.|....
T Consensus 163 ~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 163 VYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred hccccccccCCCCeeEEEecCcccccc
Confidence 22 23568899999999885543
No 61
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-05 Score=93.93 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCEEEEEc-cCCCCCCCCcc--CC--CCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhh
Q 005334 81 TLFPTSEVQSEVIVGVLD-TGVWPEIKSFD--DT--GMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTA 155 (701)
Q Consensus 81 ~~~~~~~~G~gVvVgVID-tGId~~Hp~f~--~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgia 155 (701)
.+.+.+.+|+|+.||||| -|-.+..-++. +. |.++++. .+ ..+ -.-..+|++|=+.=
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~~~~-~~-V~~---------------ig~g~~~~~~g~~E- 280 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPNPIL-SR-VTY---------------IGPGIGSGTGGAEE- 280 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCCCCc-eE-EEE---------------eCCCCCCCCCcccc-
Confidence 456667889999999999 55444333222 11 1111000 00 000 00244566664420
Q ss_pred cccccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCC-eEEEEeccCCC---C--CCccCHH
Q 005334 156 AGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGV-NVMSMSIGGGL---T--DYYRDTV 229 (701)
Q Consensus 156 AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gv-dVInlSlG~~~---~--~~~~d~i 229 (701)
.-++..-..-+||+|+|..+-. .. .....+..|+.+-...-+ -+|-+||+... . +.+-+.+
T Consensus 281 ----------~sLDVE~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~ 347 (1174)
T COG4934 281 ----------TSLDVEWSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLM 347 (1174)
T ss_pred ----------ceeehhhhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHH
Confidence 1112223467999999998866 21 222223333333222211 33445666532 1 1133455
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCc--------cccCCCceEEecC
Q 005334 230 AIGAFTAMAQGIFVSCSAGNGGPYANS--------ISNVAPWITTVGA 269 (701)
Q Consensus 230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 269 (701)
..-.+.|..+||.+++|+|.+|....+ .+..+||+++||.
T Consensus 348 d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 348 DLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 566668889999999999999876542 4458899999997
No 62
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.25 E-value=6.7e-06 Score=75.39 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=71.2
Q ss_pred eeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-ccccccccceE
Q 005334 304 VPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-LVADAQLLPSA 382 (701)
Q Consensus 304 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 382 (701)
+|++..... .......|.+...+..+++|||+|++||.|.+.+|..+++++||.++|++|+...... ...+...+|.+
T Consensus 28 ~p~~~~~~~-~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLD-TSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecc-cCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 555443322 2244578987655556899999999999999999999999999999999987654221 12233345666
Q ss_pred EechhhHHHHHHhHhcCCCCe
Q 005334 383 NVGEKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 383 ~i~~~~g~~l~~~~~~~~~~~ 403 (701)
.+ ..+|+.|++.+..+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 66 999999999998765433
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.18 E-value=7.7e-06 Score=77.42 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCccCCCCCCC---CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc-ccc-----cccccceEEechhh
Q 005334 318 GNLCMTGSLIP---AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE-LVA-----DAQLLPSANVGEKA 388 (701)
Q Consensus 318 ~~~C~~~~~~~---~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~-----~~~~~p~~~i~~~~ 388 (701)
...|.+....+ ..+.|+|+|++||.|+|.+|..+++++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45797766533 7899999999999999999999999999999999998654221 111 24589999999999
Q ss_pred HHHHHHhHhcCCC
Q 005334 389 GDAIKNYISSDPG 401 (701)
Q Consensus 389 g~~l~~~~~~~~~ 401 (701)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999877654
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.95 E-value=0.0001 Score=66.11 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=56.0
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEE-e----c--CCc----------e-EEEEeeCeEEEeecceeEEEEEEEEeee---C
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVS-S----Q--STS----------V-KILVEPESLSFSRQYEKKSYVVTFTASS---M 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~-~----~--p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~---~ 673 (701)
...+++.|++|.|+... |+++.. . . ..| . .+...|..|++ ++|++++++|+|+.++ .
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 45889999999999887 888765 1 1 111 1 67788899999 7999999999999964 2
Q ss_pred CCCCeEEEEEEEEc-CC-eEEEeeEE
Q 005334 674 PSGTTSFARLQWSD-GK-HVVGSPIA 697 (701)
Q Consensus 674 ~~~~~~~G~~~~~~-~~-~~v~~P~~ 697 (701)
..+.|++|+|.+++ .. ..+++|+.
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 45789999999994 44 59999984
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.79 E-value=0.00016 Score=66.31 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=68.9
Q ss_pred CceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC--chhhhhHHHhHcCceEEEEeecCCCCcccc-----
Q 005334 301 GSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN--SRVEKGVEVKDAGGVGMILTNTDSYGEELV----- 373 (701)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----- 373 (701)
....++++.+.. .+..+...+++|||++++++.+ .+.+|..+++++||.|+|++|.........
T Consensus 22 ~~~~~lV~~g~G---------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYG---------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCC---------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 346788886533 1122335579999999999998 888999999999999999998765432211
Q ss_pred --ccccccceEEechhhHHHHHHhHhcCC
Q 005334 374 --ADAQLLPSANVGEKAGDAIKNYISSDP 400 (701)
Q Consensus 374 --~~~~~~p~~~i~~~~g~~l~~~~~~~~ 400 (701)
.....+|++.|+.++++.|...++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999987643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.24 E-value=0.0011 Score=61.34 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCCCccceEEEEecCCC------chhhh-------hHHHhHcCceEEEEeecCCC-------Ccccc-ccccccceEEec
Q 005334 327 IPAKVAGKIVVCDRGGN------SRVEK-------GVEVKDAGGVGMILTNTDSY-------GEELV-ADAQLLPSANVG 385 (701)
Q Consensus 327 ~~~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~i~ 385 (701)
...+++||||++.++.| .+..| ...+.++||.|+|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 68999999999999985321 11111 223469999999
Q ss_pred hhhHHHHHHhHhcCCCCe
Q 005334 386 EKAGDAIKNYISSDPGPM 403 (701)
Q Consensus 386 ~~~g~~l~~~~~~~~~~~ 403 (701)
.+++..|...+..+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988765433
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.55 E-value=0.005 Score=59.54 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc------------------------------ccc---
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE------------------------------LVA--- 374 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------------------~~~--- 374 (701)
..+++|||+|++++.|.+.+|..+|+++||+|+|++++..+... ...
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 45799999999999999999999999999999999987422100 000
Q ss_pred -cccccceEEechhhHHHHHHhHhcC
Q 005334 375 -DAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 375 -~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
....||+.-|+..+++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999987543
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.15 E-value=0.014 Score=54.18 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=50.0
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCC------------------chhhhhHHHhHcCceEEEEe
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGN------------------SRVEKGVEVKDAGGVGMILT 363 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 363 (701)
...|+++.+-.- ....|....+...+++||||++.++.| .+..|...++++||.|+|++
T Consensus 20 ~~aelVfvGyGi---~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 20 KDAPLVFVGYGI---KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred cceeeEEecCCc---CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 457788766431 234687778888899999999998876 45679999999999999999
Q ss_pred ecCC
Q 005334 364 NTDS 367 (701)
Q Consensus 364 n~~~ 367 (701)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 8755
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.95 E-value=0.022 Score=52.56 Aligned_cols=64 Identities=28% Similarity=0.244 Sum_probs=50.1
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCc------------hhhhhHHHhHcCceEEEEeecCCC
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNS------------RVEKGVEVKDAGGVGMILTNTDSY 368 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 368 (701)
...++++.+-.. ....|....+...+++|||||+.++.+. +..|..++.+.||.|+|+++....
T Consensus 22 v~gelVfvGyG~---~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGL---VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCc---CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 456777766432 2356877777788999999999998763 567999999999999999997543
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.91 E-value=0.023 Score=61.51 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCC------CccccccccccceEEechhhHHHHHHhHhcCCC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSY------GEELVADAQLLPSANVGEKAGDAIKNYISSDPG 401 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 401 (701)
...++||++++.||.|.|.+|...++++||.++++.|+..+ +.........||.+++++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 56889999999999999999999999999999999998543 233344567899999999999999886666655
Q ss_pred CeEEE
Q 005334 402 PMATI 406 (701)
Q Consensus 402 ~~~~i 406 (701)
.+..+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 44433
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.68 E-value=0.034 Score=52.24 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=48.8
Q ss_pred ceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCC------------------CchhhhhHHHhHcCceEEEEe
Q 005334 302 SMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGG------------------NSRVEKGVEVKDAGGVGMILT 363 (701)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 363 (701)
..-++|+.+-. .....|....+...+++|||||+.++. |.+..|..++++.||.|+|++
T Consensus 20 vtg~lVfvGyG---i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 20 VTAPVVFAGYG---ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred ceEeEEEecCC---cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 35677776543 224567766777789999999998763 456789999999999999999
Q ss_pred ecCCC
Q 005334 364 NTDSY 368 (701)
Q Consensus 364 n~~~~ 368 (701)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98654
No 72
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.18 E-value=0.073 Score=53.30 Aligned_cols=40 Identities=35% Similarity=0.418 Sum_probs=36.3
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDS 367 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 367 (701)
..+++|||||++++.+.+.+|..+++++||.|+|+++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999888999999999999999998653
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.66 E-value=0.17 Score=41.85 Aligned_cols=57 Identities=28% Similarity=0.233 Sum_probs=38.2
Q ss_pred eeEEEEEEEeeCCCCC-e-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeC
Q 005334 616 STVKYTRTLTNVGTPT-T-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSM 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~-~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 673 (701)
.+.+++.+|+|-|... . .++++. .|.|-.+...|..+.--++|++++++++|++..+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~-~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLS-LPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEe-CCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 6899999999998765 3 888888 8999998889988764489999999999998754
No 74
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.62 E-value=0.76 Score=39.98 Aligned_cols=80 Identities=25% Similarity=0.177 Sum_probs=59.5
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEEcCCeEEEe
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGS 694 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~ 694 (701)
...+.+.+++|.+.... |++... ......++++|..=.+ ++|++.++.|+|.+. ... +.+.+.|...-....+.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~-~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~-~~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQP-ESLSSFFSVEPPSGFL-APGESVELEVTFSPT-KPL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeC-CcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC-CCC-ceEEEEEEEEECCeEEEE
Confidence 46778889999999887 998754 3234567777776556 789999999999965 222 346888988866678888
Q ss_pred eEEEE
Q 005334 695 PIAFS 699 (701)
Q Consensus 695 P~~v~ 699 (701)
|+-+.
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88665
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.42 E-value=0.048 Score=50.69 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCC
Q 005334 329 AKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSY 368 (701)
Q Consensus 329 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 368 (701)
-+++|||++++.|...+..|..++++.||+|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999999999999999999999999987543
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=93.84 E-value=0.076 Score=48.88 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=71.8
Q ss_pred eeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc----------
Q 005334 303 MVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL---------- 372 (701)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---------- 372 (701)
.++|+.+. ....|.... +.-...|.+.+.+||+|+|..|..++.++||..+|+.++......+
T Consensus 65 ~~~lV~ad------Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD------PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC------ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 45666543 456675432 2346778999999999999999999999999999998776554433
Q ss_pred cccccccceEEechhhHHHHHHhHhcCCCCeEEEEec
Q 005334 373 VADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISR 409 (701)
Q Consensus 373 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 409 (701)
..+...+|++++-..+|..+..-+..-..+-+.|...
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 2346789999999988887766665555555555443
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.56 Score=49.84 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccc----cccccccceEEechhhHHHHHHhHhcC
Q 005334 328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEEL----VADAQLLPSANVGEKAGDAIKNYISSD 399 (701)
Q Consensus 328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~~~~~~~ 399 (701)
.......+++..||+|+|.+|..+++++|..++|++|+....... ......++.++++...|+.|..|....
T Consensus 75 ~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred CCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhccc
Confidence 345667899999999999999999999999999999976654332 234567899999999999999885443
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=89.01 E-value=3.3 Score=37.16 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=39.9
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeC
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSM 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 673 (701)
-.-.++.+++|...... |++++. .++|+.+......+.+ ++|++.++.|.+..+..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~-g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVE-GLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEE-S-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEe-cCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 45678889999999888 999999 8889999665588888 79999999999998754
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=88.66 E-value=2 Score=40.70 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCCCCccceEEEEecCCCch-------------------hhhhHHHhHcCceEEEEeecC
Q 005334 325 SLIPAKVAGKIVVCDRGGNSR-------------------VEKGVEVKDAGGVGMILTNTD 366 (701)
Q Consensus 325 ~~~~~~~~gkiv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~n~~ 366 (701)
.+..-+++||||++..+...+ ..|.+.+++.||.|+|+++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 455679999999998765422 238899999999999998764
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.05 E-value=15 Score=40.38 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=56.2
Q ss_pred eeEEEEEEEeeCCCCCe--EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEE
Q 005334 616 STVKYTRTLTNVGTPTT--YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWS 686 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~--y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 686 (701)
...++...+.|.|+.+. -++++. .|.|-++.|+|.++---++|+..++.+|++++......-++=.|.-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~-~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVN-GPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEec-CCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 57888889999998765 888898 99999999999987766899999999999998655444444444444
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=72.85 E-value=33 Score=30.68 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=45.0
Q ss_pred eEEEEEEEeeCCCCCe-EEEEEEec--CCc----eEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEE
Q 005334 617 TVKYTRTLTNVGTPTT-YMVSVSSQ--STS----VKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWS 686 (701)
Q Consensus 617 ~~~~~rtvtnv~~~~~-y~~~v~~~--p~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 686 (701)
..+.+.+|+|-++... +.+.+... ..+ -.+.|+|..+.+ ++|+++.+.| +.....+.+....=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 3466788999988655 77777621 111 257899999999 7999999999 6644333444344455554
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=68.69 E-value=91 Score=28.17 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=48.6
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEe---cCCc--------------e------EEEEeeCeEEEeecceeEEEEEEEEee
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSS---QSTS--------------V------KILVEPESLSFSRQYEKKSYVVTFTAS 671 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~---~p~g--------------~------~v~v~p~~l~~~~~~~~~~~~vt~~~~ 671 (701)
.+.+++.+|+|.++... |.+.+.. ...| + -|+ .|..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEEcC
Confidence 57899999999988876 8887542 1111 0 111 2444777 799999999999887
Q ss_pred eCCCCCeEEEEEEEE
Q 005334 672 SMPSGTTSFARLQWS 686 (701)
Q Consensus 672 ~~~~~~~~~G~~~~~ 686 (701)
...-.+.+-|-|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 655566778888775
No 83
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=66.19 E-value=51 Score=27.76 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=32.7
Q ss_pred eeEEEEEEEeeCCCCCe--EEEEEEecCCceEEEEeeCeE-EEeecceeEEEEEEEEee
Q 005334 616 STVKYTRTLTNVGTPTT--YMVSVSSQSTSVKILVEPESL-SFSRQYEKKSYVVTFTAS 671 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~--y~~~v~~~p~g~~v~v~p~~l-~~~~~~~~~~~~vt~~~~ 671 (701)
...+++.+|+|.|.... +.+.+. ..|..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~--~~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLY--LDGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEE--ETTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEE--ECCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 57899999999999865 777765 334443 11222 45 689999888888775
No 84
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=66.17 E-value=55 Score=30.34 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=49.0
Q ss_pred eEEEEEEEeeCCCCCe--EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEE
Q 005334 617 TVKYTRTLTNVGTPTT--YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWS 686 (701)
Q Consensus 617 ~~~~~rtvtnv~~~~~--y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 686 (701)
...+...+-|-.+..- -++... .-.++++--.|..+++ .+++.++++.+++... ...+++||.|+|.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vEla-t~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELA-TLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEE-ecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 3445556666555433 455554 4567888889999999 6899999999999874 4567899999985
No 85
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.54 E-value=64 Score=31.40 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=42.6
Q ss_pred eeEEEEEEEeeCCCCCeEEEEEEec----CCceEEEEe--eCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEE
Q 005334 616 STVKYTRTLTNVGTPTTYMVSVSSQ----STSVKILVE--PESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQ 684 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~y~~~v~~~----p~g~~v~v~--p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~ 684 (701)
...+|+.+|.|+|+.+.|.+++. . ++++++.-- ..++..-++|+..+..+++++. ..+.+.++...
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~-D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~~a~ 109 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLT-DDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFTPAV 109 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEE-CCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee--eeEEEEccCEE
Confidence 57999999999999877999987 4 234443111 1112222678888888888875 34555554333
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=54.93 E-value=54 Score=36.61 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=46.4
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeee
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASS 672 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 672 (701)
..-.++..+.|.+.... |+.+++ .++|..+...++.+.+ ++|++.++.|++..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~-g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVL-GLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEe-cCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 46678889999988888 999999 8889888876557888 7899999999998763
No 87
>COG1470 Predicted membrane protein [Function unknown]
Probab=54.11 E-value=1.3e+02 Score=33.44 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeC-----eEEEeecceeEEEEEEEEeeeC
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPE-----SLSFSRQYEKKSYVVTFTASSM 673 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~-----~l~~~~~~~~~~~~vt~~~~~~ 673 (701)
.+..|+.++.|.|.... |..++...|+|.+....-. ++.+ ++||++.|+|.+..++.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 57899999999999988 9999987888877776544 4555 68999999999988753
No 88
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=51.12 E-value=73 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred eEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEee
Q 005334 617 TVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTAS 671 (701)
Q Consensus 617 ~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 671 (701)
......+|+|.++..- |++... .|... .|.|..-.+ .++++.++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt-~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTT-NPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES--TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcC-CCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 4666779999998876 999877 77765 566888777 789999999999874
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=47.38 E-value=50 Score=39.90 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=44.1
Q ss_pred eEEEEEEEeeCCCCCe-EEEEEEe-cCCceEEEEee------CeEEEeecceeEEEEEEEEe-ee----CCCCCeE--EE
Q 005334 617 TVKYTRTLTNVGTPTT-YMVSVSS-QSTSVKILVEP------ESLSFSRQYEKKSYVVTFTA-SS----MPSGTTS--FA 681 (701)
Q Consensus 617 ~~~~~rtvtnv~~~~~-y~~~v~~-~p~g~~v~v~p------~~l~~~~~~~~~~~~vt~~~-~~----~~~~~~~--~G 681 (701)
..+++.+|||+|+... ..+.+-. .|.. .+...+ +++.+ ++||++++++++.. .. +..+.|+ -|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCc
Confidence 5889999999998754 4444331 3322 111111 23445 68999999888875 31 2234443 35
Q ss_pred EEEEE--cCCeEEEee
Q 005334 682 RLQWS--DGKHVVGSP 695 (701)
Q Consensus 682 ~~~~~--~~~~~v~~P 695 (701)
...+. +..|.|+++
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 44443 556766654
No 90
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=45.77 E-value=59 Score=26.79 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=28.8
Q ss_pred EEEEeeCeEEEeecceeEEEEEEEEeeeCCCCCeEEEEEEEEc
Q 005334 645 KILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSD 687 (701)
Q Consensus 645 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~ 687 (701)
.|++.|..+++ ..|+++.|++++.... ..- ...+.|+.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~---~~~-~~~v~w~S 41 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS---AKV-TGKVTWTS 41 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC---CCc-cceEEEEE
Confidence 67889999999 5899999999975432 112 67788984
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=43.47 E-value=22 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 005334 487 AALLKAAHPEWSPSAIKSALMTTA 510 (701)
Q Consensus 487 aALl~~~~P~~sp~~Ik~~L~~TA 510 (701)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997653
No 92
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.22 E-value=2.5e+02 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=34.1
Q ss_pred eeec-CCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccC
Q 005334 174 RGMA-AQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGG 219 (701)
Q Consensus 174 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~ 219 (701)
.... ++++|+.+- ...||....++.-+++..+.|+|+|-+|=-.
T Consensus 31 ~~y~~~~~elvgf~--~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGFF--TCGGCPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEEe--eCCCCChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 3444 467887754 4457889999999999999999999988654
No 93
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=29.80 E-value=87 Score=37.82 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=33.5
Q ss_pred eeEEEEEEEeeCCCCCe-EEEEEEe-cCCceEEEEee-------CeEEEeecceeEEEEEEEEee
Q 005334 616 STVKYTRTLTNVGTPTT-YMVSVSS-QSTSVKILVEP-------ESLSFSRQYEKKSYVVTFTAS 671 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~-y~~~v~~-~p~g~~v~v~p-------~~l~~~~~~~~~~~~vt~~~~ 671 (701)
...+++.+|||+|+-.. -.+.+-. .|.+ .+. .| +++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 46899999999998654 3333221 3432 121 23 23445 789999999988865
No 94
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.17 E-value=1.6e+02 Score=31.21 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=51.2
Q ss_pred ecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcC----CeEEEEeccCCC----CCCccCHHHHHHHHHHHCCCEEEEec
Q 005334 176 MAAQARVATYKVCWLAGCFGSDILAGMDKAIEDG----VNVMSMSIGGGL----TDYYRDTVAIGAFTAMAQGIFVSCSA 247 (701)
Q Consensus 176 vAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~g----vdVInlSlG~~~----~~~~~d~i~~a~~~a~~~Gi~vV~AA 247 (701)
-.|.++|..|-+.-..-....+|++||+.+-+.+ +|||-+-=||.+ ..+.+..++. ...+.-+.|+.+-
T Consensus 38 r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var---ai~~~~~PvisaI 114 (319)
T PF02601_consen 38 RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR---AIAASPIPVISAI 114 (319)
T ss_pred hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH---HHHhCCCCEEEec
Confidence 3577777777664333367788999999998865 999999999876 2222333342 2336679999999
Q ss_pred CCCC
Q 005334 248 GNGG 251 (701)
Q Consensus 248 GN~G 251 (701)
|=+-
T Consensus 115 GHe~ 118 (319)
T PF02601_consen 115 GHET 118 (319)
T ss_pred CCCC
Confidence 9874
No 95
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=27.66 E-value=2.7e+02 Score=23.20 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=11.8
Q ss_pred eEEEeecceeEEEEEEEEee
Q 005334 652 SLSFSRQYEKKSYVVTFTAS 671 (701)
Q Consensus 652 ~l~~~~~~~~~~~~vt~~~~ 671 (701)
..++ ++||+++|+.++...
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEE--TT-EEEEEEEESS-
T ss_pred EEEE-CCCCEEEEEEEECCC
Confidence 4555 688888888887654
No 96
>PRK15019 CsdA-binding activator; Provisional
Probab=27.64 E-value=52 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=26.7
Q ss_pred eccccchhhhHhHHHHHHHhhCCCCCHHHHHH
Q 005334 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKS 504 (701)
Q Consensus 473 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 504 (701)
+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33555 58999999999999999999999876
No 97
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=27.64 E-value=48 Score=25.41 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred EeeccccchhhhHhHHHH------HHHhhCCCCCHHHHHHHHH
Q 005334 471 NIISGTSMSCPHVSGLAA------LLKAAHPEWSPSAIKSALM 507 (701)
Q Consensus 471 ~~~sGTSmAaP~VAG~aA------Ll~~~~P~~sp~~Ik~~L~ 507 (701)
-.+.||=+..=.|....+ -+.+.||++++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 355677666555544432 2455699999999999984
No 98
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.80 E-value=84 Score=22.43 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 005334 486 LAALLKAAHPEWSPSAIKSALMTTA 510 (701)
Q Consensus 486 ~aALl~~~~P~~sp~~Ik~~L~~TA 510 (701)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998643
No 99
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.59 E-value=57 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=27.7
Q ss_pred eeccccchhhhHhHHHHHHHhhCCCCCHHHHHHH
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSA 505 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~ 505 (701)
.+.|.| =|+.|-|++|||.+.+-..||++|.+.
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 344666 489999999999999999999998754
No 100
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.23 E-value=1.7e+02 Score=32.61 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=54.9
Q ss_pred eeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcC-CeEEEEeccCCC----CCCccCHHHHHHHHHHHCCCEEEEecC
Q 005334 174 RGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDG-VNVMSMSIGGGL----TDYYRDTVAIGAFTAMAQGIFVSCSAG 248 (701)
Q Consensus 174 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~g-vdVInlSlG~~~----~~~~~d~i~~a~~~a~~~Gi~vV~AAG 248 (701)
+-=.|.++++.|-+.-........|++||+.|-+.+ +|||=+.=|+.+ ..+-++.+.. .....-+.||.|-|
T Consensus 157 ~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaR---Ai~~s~iPvISAVG 233 (440)
T COG1570 157 SRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVAR---AIAASRIPVISAVG 233 (440)
T ss_pred HhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHH---HHHhCCCCeEeecc
Confidence 334688999998876543367788999999999887 999999999876 2233333443 33467899999999
Q ss_pred CCC
Q 005334 249 NGG 251 (701)
Q Consensus 249 N~G 251 (701)
-+-
T Consensus 234 HEt 236 (440)
T COG1570 234 HET 236 (440)
T ss_pred cCC
Confidence 864
No 101
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=22.68 E-value=39 Score=15.35 Aligned_cols=6 Identities=67% Similarity=0.972 Sum_probs=3.9
Q ss_pred cccCCC
Q 005334 423 AFSSRG 428 (701)
Q Consensus 423 ~fSS~G 428 (701)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467766
No 102
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.65 E-value=74 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=27.0
Q ss_pred eeccccchhhhHhHHHHHHHhhCCCCCHHHHHH
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKS 504 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 504 (701)
.+.|.| =|++|-|.+|||.+.+-..||++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 334555 58999999999999999999999875
No 103
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=21.87 E-value=63 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.6
Q ss_pred chhhhHhHHHHHH
Q 005334 478 MSCPHVSGLAALL 490 (701)
Q Consensus 478 mAaP~VAG~aALl 490 (701)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999998754
No 104
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.11 E-value=88 Score=28.44 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=26.5
Q ss_pred eeccccchhhhHhHHHHHHHhhCCCCCHHHHHHH
Q 005334 472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSA 505 (701)
Q Consensus 472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~ 505 (701)
.+.|.|= |+.|-|++|||.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455555 67999999999999999999998764
No 105
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=81 Score=29.37 Aligned_cols=31 Identities=32% Similarity=0.278 Sum_probs=25.4
Q ss_pred eccccchhhhHhHHHHHHHhhCCCCCHHHHHH
Q 005334 473 ISGTSMSCPHVSGLAALLKAAHPEWSPSAIKS 504 (701)
Q Consensus 473 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 504 (701)
+.|=|= +++|.|.+|++.+.+-..||++|..
T Consensus 74 F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 74 FFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred Eeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344443 7999999999999999999999854
No 106
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.31 E-value=3.1e+02 Score=20.59 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=19.8
Q ss_pred eeEEEEEEEeeCCCCCeEEEEEE-ecCCce
Q 005334 616 STVKYTRTLTNVGTPTTYMVSVS-SQSTSV 644 (701)
Q Consensus 616 ~~~~~~rtvtnv~~~~~y~~~v~-~~p~g~ 644 (701)
...+++.+|+|.|......+.+. .-|+|+
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~ 41 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGT 41 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCC
Confidence 58999999999998654444443 145554
Done!