Query         005334
Match_columns 701
No_of_seqs    438 out of 2709
Neff          8.1 
Searched_HMMs 13730
Date          Mon Mar 25 22:26:10 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005334.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005334hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r6va_ c.41.1.1 (A:) Fervidol 100.0 3.3E-50 2.4E-54  464.4  23.9  344   22-551    52-443 (671)
  2 d1v6ca_ c.41.1.1 (A:) Alkaline 100.0   1E-49 7.4E-54  440.1  21.7  373   81-564    15-433 (435)
  3 d1dbia_ c.41.1.1 (A:) Thermost 100.0 1.1E-47 8.1E-52  398.5  23.3  264   74-546    13-279 (280)
  4 d1r0re_ c.41.1.1 (E:) Subtilis 100.0 5.2E-47 3.8E-51  392.5  19.3  256   80-546    14-274 (274)
  5 d1thma_ c.41.1.1 (A:) Thermita 100.0 1.8E-46 1.3E-50  389.4  22.7  258   79-546    20-278 (279)
  6 d1gcia_ c.41.1.1 (A:) Subtilis 100.0 1.1E-46 7.7E-51  389.0  20.8  256   79-546    13-269 (269)
  7 d1to2e_ c.41.1.1 (E:) Subtilis 100.0 8.7E-47 6.3E-51  392.2  20.1  258   79-546    13-275 (281)
  8 d2ixta1 c.41.1.1 (A:1-309) Sph 100.0 8.3E-42 6.1E-46  359.0  27.6  287   79-541    15-309 (309)
  9 d2pwaa1 c.41.1.1 (A:1-279) Pro 100.0 9.5E-42 6.9E-46  353.6  18.5  237   85-541    26-271 (279)
 10 d1wmda2 c.41.1.1 (A:1-318) Alk 100.0 1.7E-40 1.2E-44  350.3  24.7  295   81-546    12-317 (318)
 11 d1p8ja2 c.41.1.1 (A:109-442) F 100.0 1.7E-38 1.3E-42  337.0  20.7  283   80-546    27-328 (334)
 12 d2id4a2 c.41.1.1 (A:122-460) K 100.0 1.6E-38 1.2E-42  338.3  17.3  287   79-547    35-334 (339)
 13 d1t1ga_ c.41.1.2 (A:) Serine-c 100.0 4.3E-31 3.1E-35  281.9   3.9  161   85-270    19-193 (357)
 14 d1ga6a_ c.41.1.2 (A:) Serine-c  99.9 2.9E-28 2.1E-32  261.7   5.4  160   86-271    21-204 (369)
 15 d1scjb_ d.58.3.2 (B:) Subtilis  97.8 1.5E-05 1.1E-09   61.9   5.7   43   22-65     28-70  (71)
 16 d1v5ib1 d.58.3.2 (B:1-72) Prot  97.3 0.00011 7.8E-09   57.1   4.9   40   22-61     29-71  (72)
 17 d1w8oa1 b.1.18.2 (A:403-505) S  96.4   0.029 2.1E-06   46.0  12.9   78  616-698    17-97  (103)
 18 d1de4c2 c.8.4.1 (C:190-382) Tr  96.2  0.0034 2.5E-07   57.6   6.5   70  328-397    58-161 (193)
 19 d3bi1a2 c.8.4.1 (A:118-350) Gl  95.4   0.012 8.7E-07   55.5   6.9   38  328-365    76-113 (233)
 20 d1grwa_ b.1.11.2 (A:) Major sp  34.4      56   0.004   26.2   7.5   52  616-671    23-75  (124)
 21 d1v6ca_ c.41.1.1 (A:) Alkaline  31.2      12 0.00087   37.4   3.2   31  417-455   182-212 (435)
 22 d1rowa_ b.1.11.2 (A:) SSP-19 {  30.2   1E+02  0.0074   23.9   8.2   48  620-671    17-65  (107)
 23 d1m1sa_ b.1.11.2 (A:) WR4 {Nem  28.4      99  0.0072   24.0   7.9   48  620-671    20-68  (109)
 24 d1k78a2 a.4.1.5 (A:82-142) Pax  21.8      48  0.0035   23.1   3.9   33  478-510     9-41  (61)
 25 d1wgla_ a.5.2.4 (A:) Toll-inte  21.5      30  0.0022   24.1   2.8   25  486-510    12-36  (59)
 26 d1mzga_ d.224.1.1 (A:) SufE (Y  20.5      31  0.0022   28.8   3.3   33  472-505    66-98  (144)

No 1  
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}
Probab=100.00  E-value=3.3e-50  Score=464.37  Aligned_cols=344  Identities=28%  Similarity=0.305  Sum_probs=251.0

Q ss_pred             cccEEEEecceeeEEEEEeCHHHH----H--HhhcCCCeEEEEeCceeccCCC----CCC--------------------
Q 005334           22 SAAMLYTYKNVIHGFSTRLTAKEA----E--SLQKQPGIVSVLPEVRYELHTT----RTP--------------------   71 (701)
Q Consensus        22 ~~~~~~~y~~~~ng~s~~l~~~~~----~--~L~~~p~V~~V~~~~~~~~~~~----~s~--------------------   71 (701)
                      ..++++.+. .++.+.++++...+    +  ++..+|+|++|+|+...++...    ..+                    
T Consensus        52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (671)
T d1r6va_          52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE  130 (671)
T ss_dssp             TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred             CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence            356777776 57778888764322    2  2335899999999866554210    000                    


Q ss_pred             ---cccCCCCC--CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCC
Q 005334           72 ---EFLGLGKS--ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDG  146 (701)
Q Consensus        72 ---~~~gl~~~--~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~g  146 (701)
                         ..|++..+  ..+|....+|+||+|||||||||++||+|.++..       .+  |+....  .......++.|..|
T Consensus       131 ~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~~~-------~~--~~~~~~--~~~~~~~~~~d~~g  199 (671)
T d1r6va_         131 LSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVI-------AG--YRPAFD--EELPAGTDSSYGGS  199 (671)
T ss_dssp             TGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTTBC-------CE--EEGGGT--EEECTTCBCCTTCS
T ss_pred             ccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCCcc-------cC--cccccc--CCCCCCCcCcccCC
Confidence               11222221  2233345689999999999999999999987622       11  111111  01112234667889


Q ss_pred             ChhHHHHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCC------C-CChHHHHHHHHHHHHcCCeEEEEeccC
Q 005334          147 HGTHTSTTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLA------G-CFGSDILAGMDKAIEDGVNVMSMSIGG  219 (701)
Q Consensus       147 HGThvAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~------g-~~~~~i~~ai~~ai~~gvdVInlSlG~  219 (701)
                      |||||||||||+...         ..+.||||+|+|+++|++++.      + .....+++||+||+++|++|||||||+
T Consensus       200 HGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~  270 (671)
T d1r6va_         200 AGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG  270 (671)
T ss_dssp             HHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEB
T ss_pred             CCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccc
Confidence            999999999997421         124899999999999999642      3 566789999999999999999999998


Q ss_pred             CCCCCccCHHHHHHHHHHHCCCEEEEecCCCCCCC-CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCC
Q 005334          220 GLTDYYRDTVAIGAFTAMAQGIFVSCSAGNGGPYA-NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRP  298 (701)
Q Consensus       220 ~~~~~~~d~i~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~  298 (701)
                      ..   ....+..++..|.++|+++|+||||++... ...+...|++|+|||.+...                        
T Consensus       271 ~~---~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------  323 (671)
T d1r6va_         271 WG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------  323 (671)
T ss_dssp             SC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------
T ss_pred             cc---CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------
Confidence            43   345667777889999999999999998754 45677889999999842110                        


Q ss_pred             CCCceeeEEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccc
Q 005334          299 LSGSMVPIVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQL  378 (701)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~  378 (701)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (671)
T d1r6va_         324 --------------------------------------------------------------------------------  323 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCC
Q 005334          379 LPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGP  458 (701)
Q Consensus       379 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~  458 (701)
                                                            ....++.||+|||..        ||+|||++|+++++.....
T Consensus       324 --------------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~  357 (671)
T d1r6va_         324 --------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSI  357 (671)
T ss_dssp             --------------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTST
T ss_pred             --------------------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCcc
Confidence                                                  011678999999976        9999999999998754322


Q ss_pred             CCC-----CCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCC
Q 005334          459 TGL-----ESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFD  533 (701)
Q Consensus       459 ~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~  533 (701)
                      ...     ........|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+            .+..
T Consensus       358 ~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~~~~  425 (671)
T d1r6va_         358 GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHD  425 (671)
T ss_dssp             TCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTT
T ss_pred             ccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCCC
Confidence            111     11123457999999999999999999999999999999999999999999875332            2348


Q ss_pred             CCccccCccccCCCCccc
Q 005334          534 FGAGHVDPVAALDPGLVY  551 (701)
Q Consensus       534 ~G~G~vn~~~A~~~glv~  551 (701)
                      ||||+||+.+|++..+..
T Consensus       426 ~G~G~vna~~Av~~~~~~  443 (671)
T d1r6va_         426 TGYGLVKLDAALQGPLPT  443 (671)
T ss_dssp             TBTCBCCHHHHHHCCCCS
T ss_pred             cccChhCHHHHhhCcCCC
Confidence            999999999999865543


No 2  
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=100.00  E-value=1e-49  Score=440.10  Aligned_cols=373  Identities=25%  Similarity=0.326  Sum_probs=237.2

Q ss_pred             CCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334           81 TLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV  160 (701)
Q Consensus        81 ~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~  160 (701)
                      .+|.  .+|+||+|||||||||++||+|.++...       +  ++     .....+..++.|.+||||||||||||+..
T Consensus        15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~~~~-------~--~~-----~~~~~~~~~~~d~~gHGThvAgiiag~~~   78 (435)
T d1v6ca_          15 VLSD--SQAGNRTICIIDSGYDRSHNDLNANNVT-------G--TN-----NSGTGNWYQPGNNNAHGTHVAGTIAAIAN   78 (435)
T ss_dssp             GSCC--TTGGGCEEEEEESCCCTTSTTTTTSEEE-------E--CC-----CTTSCCTTCCCSSCCHHHHHHHHHHCCCS
T ss_pred             hhhh--cCCCCcEEEEEcCCCCCCChhhccCeee-------e--ec-----cCCCCCCCCCCCCCCcHHHHHHHHhccCC
Confidence            3554  4799999999999999999999875211       1  11     11122344578899999999999999752


Q ss_pred             CCCcccccCCCceeeecC--CCeEEEEEeecCCC-CChHHHHHHHHHHHH-cCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334          161 NGASLFGFASGTARGMAA--QARVATYKVCWLAG-CFGSDILAGMDKAIE-DGVNVMSMSIGGGLTDYYRDTVAIGAFTA  236 (701)
Q Consensus       161 ~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~~~~~d~i~~a~~~a  236 (701)
                      .    .|     +.||||  +++|+.+|++.... +...++++||+++++ .|++|||+|||...   ....+..++..+
T Consensus        79 ~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~---~~~~~~~a~~~~  146 (435)
T d1v6ca_          79 N----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTH  146 (435)
T ss_dssp             S----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHH
T ss_pred             C----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCC---CCHHHHhhhhhc
Confidence            2    12     489999  89999999998764 677789999999996 59999999999854   234556677788


Q ss_pred             HHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEE--EEEEeecCCCCCCceeeE-EEcCCCC
Q 005334          237 MAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSF--SGVSLYSRRPLSGSMVPI-VDAANVS  313 (701)
Q Consensus       237 ~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~--~g~s~~~~~~~~~~~~~l-~~~~~~~  313 (701)
                      .++|+++|+||||+|+...+.++.++++|+|||++.+........++....+  +|..++.........+.. .......
T Consensus       147 ~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~  226 (435)
T d1v6ca_         147 YNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSY  226 (435)
T ss_dssp             HHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEEC
T ss_pred             cccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCcccccccCCcee
Confidence            9999999999999999988888999999999998766543221111111111  011111000000000000 0000000


Q ss_pred             C-----------CcCCCc---------------c--CCCCCCCCCccceEEEEecCCC-----chhhhhHHHhHcCceEE
Q 005334          314 S-----------TSSGNL---------------C--MTGSLIPAKVAGKIVVCDRGGN-----SRVEKGVEVKDAGGVGM  360 (701)
Q Consensus       314 ~-----------~~~~~~---------------C--~~~~~~~~~~~gkiv~~~~g~~-----~~~~~~~~~~~~Ga~g~  360 (701)
                      .           ......               |  ....+....+.+++.++.+...     ............++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (435)
T d1v6ca_         227 FSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGI  306 (435)
T ss_dssp             GGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEE
T ss_pred             eccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCccccceeeeeceeecccCCcce
Confidence            0           000000               0  0011112233444444443211     12222333333333333


Q ss_pred             EEeecCCCCccccccccccceEEechhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCC--CCCCC
Q 005334          361 ILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPIT--PEILK  438 (701)
Q Consensus       361 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~--~~~lK  438 (701)
                      +.                                                            .+++.+|....  ....|
T Consensus       307 ~~------------------------------------------------------------~~~~~~~~~~~~~~~~~~  326 (435)
T d1v6ca_         307 IV------------------------------------------------------------YSNSALPGLQNPFLVDAN  326 (435)
T ss_dssp             EE------------------------------------------------------------ECCSSSCSCCCCEEECTT
T ss_pred             EE------------------------------------------------------------eccCCCCCcCCccccccC
Confidence            32                                                            23333333321  25679


Q ss_pred             CcEEecCCcEEecccCCCCC----CCCCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 005334          439 PDLIAPGVNILAGWTGAVGP----TGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTN  514 (701)
Q Consensus       439 PDI~APG~~I~sa~~~~~~~----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~  514 (701)
                      |||.+||..|.+++......    ...........|..|||||||||||||++|||||+||+||+++||++||+||++++
T Consensus       327 ~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~  406 (435)
T d1v6ca_         327 SDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLS  406 (435)
T ss_dssp             CCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS
T ss_pred             CceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC
Confidence            99999999887664321000    00001112346999999999999999999999999999999999999999999774


Q ss_pred             CCCcccccCCCCCCCCCCCCCccccCccccCCCCccccCChhhHHhhhhc
Q 005334          515 GNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCA  564 (701)
Q Consensus       515 ~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~  564 (701)
                                  .++++++||+|+||+.+|++           ||...|.
T Consensus       407 ------------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~  433 (435)
T d1v6ca_         407 ------------VAGRDNQTGYGMINAVAAKA-----------YLDESCT  433 (435)
T ss_dssp             ------------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred             ------------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence                        23456799999999999965           8888775


No 3  
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}
Probab=100.00  E-value=1.1e-47  Score=398.54  Aligned_cols=264  Identities=30%  Similarity=0.359  Sum_probs=209.9

Q ss_pred             cCCCC--CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHH
Q 005334           74 LGLGK--SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHT  151 (701)
Q Consensus        74 ~gl~~--~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThv  151 (701)
                      |+++.  ++.+|+++.+|+||+|||||||||++||+|.++.       ..+.+         .......+.|..+|||||
T Consensus        13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~~-------~~~~~---------~~~~~~~~~d~~~HGT~v   76 (280)
T d1dbia_          13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKV-------IKGYD---------FVDNDYDPMDLNNHGTHV   76 (280)
T ss_dssp             CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTE-------EEEEE---------TTTTBSCCCCSSSHHHHH
T ss_pred             cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCCe-------eeccc---------ccCCCCccccccccccce
Confidence            44443  3569999999999999999999999999998752       11111         112233467899999999


Q ss_pred             HHhhcccccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHH
Q 005334          152 STTAAGSVVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVA  230 (701)
Q Consensus       152 AgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~  230 (701)
                      ||+|+|....        .+.+.||||+|+|+.+|+++..+ +...++++||++++++|++|||+|||...   ..+...
T Consensus        77 ag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~---~~~~~~  145 (280)
T d1dbia_          77 AGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC---HTTTLE  145 (280)
T ss_dssp             HHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC---CCHHHH
T ss_pred             eEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc---cchhHH
Confidence            9999987533        23358999999999999998766 78899999999999999999999999853   234455


Q ss_pred             HHHHHHHHCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334          231 IGAFTAMAQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA  310 (701)
Q Consensus       231 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~  310 (701)
                      .+...+.++|+++|+||||+|......+...|++|+|||.+                                       
T Consensus       146 ~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~---------------------------------------  186 (280)
T d1dbia_         146 NAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD---------------------------------------  186 (280)
T ss_dssp             HHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC---------------------------------------
T ss_pred             HHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec---------------------------------------
Confidence            66678899999999999999987777778889999999831                                       


Q ss_pred             CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334          311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD  390 (701)
Q Consensus       311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~  390 (701)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (280)
T d1dbia_         187 --------------------------------------------------------------------------------  186 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCccccee
Q 005334          391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSF  470 (701)
Q Consensus       391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y  470 (701)
                                                ..+.++.||++||..        |++|||.+|++.....             .|
T Consensus       187 --------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~~-------------~~  219 (280)
T d1dbia_         187 --------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITGN-------------RY  219 (280)
T ss_dssp             --------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETTT-------------EE
T ss_pred             --------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccCc-------------ce
Confidence                                      122678899999876        9999999999988764             79


Q ss_pred             EeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          471 NIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       471 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      ..++|||||||+|||++|||++.  .+++.+||++|++||+++..              +...||+|+||+.+||+
T Consensus       220 ~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~--------------~~~~~G~G~ln~~~Al~  279 (280)
T d1dbia_         220 AYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG--------------TGTYFKYGRINSYNAVT  279 (280)
T ss_dssp             EEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT--------------BTTTBSSEECCHHHHHT
T ss_pred             eccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC--------------CCCcCCCCeEcHHHHcC
Confidence            99999999999999999999995  55899999999999987642              12379999999999986


No 4  
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}
Probab=100.00  E-value=5.2e-47  Score=392.46  Aligned_cols=256  Identities=29%  Similarity=0.415  Sum_probs=209.9

Q ss_pred             CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334           80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV  159 (701)
Q Consensus        80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~  159 (701)
                      ..+|.++++|+||+|||||||||++||+|+..         .+.+         .......+.|.+||||||||||++..
T Consensus        14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~---------~~~~---------~~~~~~~~~d~~gHGT~vAgii~~~~   75 (274)
T d1r0re_          14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVV---------GGAS---------FVAGEAYNTDGNGHGTHVAGTVAALD   75 (274)
T ss_dssp             HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------EEEE---------CSTTCCTTCCSSSHHHHHHHHHHCCS
T ss_pred             HHHHHcCCCCCCeEEEEECCCCCCCChhhccc---------CCcc---------ccCCCCCCCCcccccccccccccccc
Confidence            45899999999999999999999999999532         1111         11222346788899999999999875


Q ss_pred             cCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHHH
Q 005334          160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAMA  238 (701)
Q Consensus       160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~~  238 (701)
                      ...         ...|+||+|+|+.+|+++..+ +..++++++++++.+++++|+|+|||....   .........++.+
T Consensus        76 ~~~---------~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~---~~~~~~~~~~a~~  143 (274)
T d1r0re_          76 NTT---------GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG---STAMKQAVDNAYA  143 (274)
T ss_dssp             SSS---------BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC---CHHHHHHHHHHHH
T ss_pred             ccc---------cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccccccc---hhhhhHHHHHHhh
Confidence            321         237999999999999998776 678899999999999999999999998543   3445556668889


Q ss_pred             CCCEEEEecCCCCCCCC----ccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334          239 QGIFVSCSAGNGGPYAN----SISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS  314 (701)
Q Consensus       239 ~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~  314 (701)
                      +++++|+||||+|....    ..+...|++|+|||.+                                           
T Consensus       144 ~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~-------------------------------------------  180 (274)
T d1r0re_         144 RGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD-------------------------------------------  180 (274)
T ss_dssp             TTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC-------------------------------------------
T ss_pred             CceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC-------------------------------------------
Confidence            99999999999986532    3445677888888732                                           


Q ss_pred             CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334          315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN  394 (701)
Q Consensus       315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~  394 (701)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (274)
T d1r0re_         181 --------------------------------------------------------------------------------  180 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334          395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS  474 (701)
Q Consensus       395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s  474 (701)
                                            ..+.++.||++||.        |||+|||++|+++...+             .|..++
T Consensus       181 ----------------------~~~~~~~~s~~g~~--------~di~APG~~i~~~~~~~-------------~~~~~s  217 (274)
T d1r0re_         181 ----------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPTN-------------TYATLN  217 (274)
T ss_dssp             ----------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETTT-------------EEEEEC
T ss_pred             ----------------------CCCCcccccCCCCC--------EEEEecCCCcccccCCC-------------CeEeec
Confidence                                  11266889999984        59999999999998764             789999


Q ss_pred             cccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          475 GTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       475 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      |||||||+|||++|||+|++|+|++++||++|++||+++..               .+.||+|+||+.+|++
T Consensus       218 GTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~---------------~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS---------------SFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC---------------HHHHTTCBCCHHHHTC
T ss_pred             CCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCceEcCeecHHHhcC
Confidence            99999999999999999999999999999999999987631               2389999999999986


No 5  
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=100.00  E-value=1.8e-46  Score=389.36  Aligned_cols=258  Identities=27%  Similarity=0.388  Sum_probs=214.7

Q ss_pred             CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334           79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS  158 (701)
Q Consensus        79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~  158 (701)
                      ++.+|+.+ +|+||+|+|||||||++||+|.++..       .+  +       +.......+.|..+||||||++|++.
T Consensus        20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~~~-------~~--~-------~~~~~~~~~~d~~~HGT~vag~i~~~   82 (279)
T d1thma_          20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV-------GG--W-------DFVDNDSTPQNGNGHGTHCAGIAAAV   82 (279)
T ss_dssp             HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE-------EE--E-------ETTTTBSCCCCSSSHHHHHHHHHHCC
T ss_pred             HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCCee-------cc--c-------cccccCcccccccccccccceeeeec
Confidence            35689887 89999999999999999999987521       11  1       11223345778899999999999998


Q ss_pred             ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334          159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM  237 (701)
Q Consensus       159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~  237 (701)
                      ...+        ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|||...   .......+...+.
T Consensus        83 ~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~---~~~~~~~a~~~a~  151 (279)
T d1thma_          83 TNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSGLQQAVNYAW  151 (279)
T ss_dssp             CSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHH
T ss_pred             cCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc---cchhHHHHHHHHH
Confidence            5332        3358999999999999998776 78889999999999999999999999853   3345566667888


Q ss_pred             HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334          238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS  317 (701)
Q Consensus       238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~  317 (701)
                      ++|+++|+|+||+|......+...|++++|||++                                              
T Consensus       152 ~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~----------------------------------------------  185 (279)
T d1thma_         152 NKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD----------------------------------------------  185 (279)
T ss_dssp             HTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC----------------------------------------------
T ss_pred             hcCceEEEeccccccCCCcccccccccccccccc----------------------------------------------
Confidence            9999999999999988877788889999999832                                              


Q ss_pred             CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334          318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS  397 (701)
Q Consensus       318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~  397 (701)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (279)
T d1thma_         186 --------------------------------------------------------------------------------  185 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334          398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS  477 (701)
Q Consensus       398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS  477 (701)
                                         ..+.++.||++|+..        ||.|||.+|+++.+.+             .|..++|||
T Consensus       186 -------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~-------------~~~~~sGTS  225 (279)
T d1thma_         186 -------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTS  225 (279)
T ss_dssp             -------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETTT-------------EEEEECSHH
T ss_pred             -------------------CCCCCccccCCCceE--------EEeeeeeccccccCcc-------------cccccCCcc
Confidence                               122678899999986        9999999999998775             799999999


Q ss_pred             chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      ||||||||++|||+|.+|  ++.+||++|++||+++..              ....||+|+||+.+|++
T Consensus       226 ~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g--------------~~~~~G~G~vn~~~Av~  278 (279)
T d1thma_         226 MATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG--------------TGTYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             HHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--------------BTTTBSSEECCHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--------------CCCcceeeeEcHHHhhC
Confidence            999999999999999765  789999999999987641              22389999999999985


No 6  
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Probab=100.00  E-value=1.1e-46  Score=389.04  Aligned_cols=256  Identities=31%  Similarity=0.422  Sum_probs=213.7

Q ss_pred             CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334           79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS  158 (701)
Q Consensus        79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~  158 (701)
                      +..+|..+++|+||+||||||||+ +||+|....         +.         +.......+.|.++|||||||+|++.
T Consensus        13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~~---------~~---------~~~~~~~~~~d~~~HGT~vAgii~~~   73 (269)
T d1gcia_          13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIRG---------GA---------SFVPGEPSTQDGNGHGTHVAGTIAAL   73 (269)
T ss_dssp             HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEEE---------EE---------ECSTTCCSCSCSSSHHHHHHHHHHCC
T ss_pred             cHHHHhCCCCCCCeEEEEECCCCC-CCcccCccc---------cc---------cccCCCCCccccchhhheeccccccc
Confidence            356999999999999999999998 899996431         11         11122335678899999999999987


Q ss_pred             ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334          159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM  237 (701)
Q Consensus       159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~  237 (701)
                      ...         ....|+||+|+|+.+|++...+ .....+.+++++++.+++++||+|||...   .......+...+.
T Consensus        74 ~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~---~~~~~~~a~~~a~  141 (269)
T d1gcia_          74 NNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSAT  141 (269)
T ss_dssp             CSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHH
T ss_pred             CCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc---ccchHHHHHHhhc
Confidence            422         2247999999999999998776 67778999999999999999999999753   2344555667889


Q ss_pred             HCCCEEEEecCCCCCCCCccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCCcC
Q 005334          238 AQGIFVSCSAGNGGPYANSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSSTSS  317 (701)
Q Consensus       238 ~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~~~  317 (701)
                      ++|++||+||||+|......+...|++|+|||.+                                              
T Consensus       142 ~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------------  175 (269)
T d1gcia_         142 SRGVLVVAASGNSGAGSISYPARYANAMAVGATD----------------------------------------------  175 (269)
T ss_dssp             HTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----------------------------------------------
T ss_pred             cCceEEEeccCCCCCCCccCccccCCceEEEEEc----------------------------------------------
Confidence            9999999999999988778888899999999832                                              


Q ss_pred             CCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHhHh
Q 005334          318 GNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYIS  397 (701)
Q Consensus       318 ~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~  397 (701)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (269)
T d1gcia_         176 --------------------------------------------------------------------------------  175 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecccc
Q 005334          398 SDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTS  477 (701)
Q Consensus       398 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS  477 (701)
                                         ..+.++.||++||..        ||+|||.++..+....             .|..++|||
T Consensus       176 -------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~-------------~~~~~sGTS  215 (269)
T d1gcia_         176 -------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------------TYASLNGTS  215 (269)
T ss_dssp             -------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETTT-------------EEEEECSHH
T ss_pred             -------------------cCCCcccccCCCCCc--------eEEEeeecceeccCCC-------------ceEecCCcc
Confidence                               112667899999875        9999999999988764             799999999


Q ss_pred             chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      ||||+|||++|||+|++|+|++++||++|++||+++..               ...||+|+||+++|++
T Consensus       216 ~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------------~~~~G~G~ln~~~Avk  269 (269)
T d1gcia_         216 MATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------------TNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC---------------HHHHTTCBCCHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcccCeEcHHHhcC
Confidence            99999999999999999999999999999999987642               1278999999999985


No 7  
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}
Probab=100.00  E-value=8.7e-47  Score=392.23  Aligned_cols=258  Identities=31%  Similarity=0.457  Sum_probs=211.2

Q ss_pred             CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334           79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS  158 (701)
Q Consensus        79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~  158 (701)
                      ++.+|+++++|+||+|||||||||++||+|+...         +.++  .      ..+.....+..+|||||||||+|.
T Consensus        13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~~---------~~~~--~------~~~~~~~~~~~~HGT~vAgiiag~   75 (281)
T d1to2e_          13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG---------GASM--V------PSETNPFQDNNSHGTHVAGTVAAL   75 (281)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE---------EEEC--C------TTCCCTTCCSSSHHHHHHHHHHCC
T ss_pred             cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhcC---------Cccc--c------CCCCCCCcCcCCCCceeecccccC
Confidence            4569999999999999999999999999996431         1111  0      011112234678999999999987


Q ss_pred             ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHHH
Q 005334          159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTAM  237 (701)
Q Consensus       159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a~  237 (701)
                      ...         ....|+||+|+|+.+|++..++ ....+++++|+++++.+++|+|+|||..   .....+..++..+.
T Consensus        76 ~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~---~~~~~~~~ai~~~~  143 (281)
T d1to2e_          76 NNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP---SGSAALKAAVDKAV  143 (281)
T ss_dssp             SSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHHHHHHHHHHH
T ss_pred             CCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC---cchHHHHHHHHHHH
Confidence            422         1247999999999999998776 6788899999999999999999999974   34456777778899


Q ss_pred             HCCCEEEEecCCCCCCC----CccccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCC
Q 005334          238 AQGIFVSCSAGNGGPYA----NSISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVS  313 (701)
Q Consensus       238 ~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~  313 (701)
                      ++|+++|+||||+|...    ...+...+++|+|||.+                                          
T Consensus       144 ~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~------------------------------------------  181 (281)
T d1to2e_         144 ASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD------------------------------------------  181 (281)
T ss_dssp             HTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC------------------------------------------
T ss_pred             hcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec------------------------------------------
Confidence            99999999999998653    23455678888888732                                          


Q ss_pred             CCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 005334          314 STSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIK  393 (701)
Q Consensus       314 ~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~  393 (701)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (281)
T d1to2e_         182 --------------------------------------------------------------------------------  181 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEee
Q 005334          394 NYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNII  473 (701)
Q Consensus       394 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~  473 (701)
                                             ..+.++.||++||..        |+.|||.+|+++.+.+             .|..+
T Consensus       182 -----------------------~~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~-------------~~~~~  217 (281)
T d1to2e_         182 -----------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAY  217 (281)
T ss_dssp             -----------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETTT-------------EEEEE
T ss_pred             -----------------------CCCCCCcccCCCCCc--------cccCCCCCceeecCCC-------------eeEcc
Confidence                                   112667899999976        9999999999998764             78999


Q ss_pred             ccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          474 SGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       474 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      +|||||||+|||++|||+|++|+|++++||++|++||+++..               ...||+|+||+.+|++
T Consensus       218 ~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~---------------~~~~G~G~ld~~~A~~  275 (281)
T d1to2e_         218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD---------------SFYYGKGLINVQAAAQ  275 (281)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC---------------HHHHTTCBCCHHHHTS
T ss_pred             cCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcccCcccHHHHHh
Confidence            999999999999999999999999999999999999997641               2279999999999998


No 8  
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=100.00  E-value=8.3e-42  Score=359.03  Aligned_cols=287  Identities=26%  Similarity=0.329  Sum_probs=211.5

Q ss_pred             CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334           79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS  158 (701)
Q Consensus        79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~  158 (701)
                      ++.+|..+++|+||+|||||||||++||+|.++.       +.+  ++....   .........|..||||||||||+|.
T Consensus        15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~~-------~~~--~~~~~~---~~~~~~~~~d~~gHGT~VAgiiaa~   82 (309)
T d2ixta1          15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNV-------EQC--KDFTGA---TTPINNSCTDRNGHGTHVAGTALAD   82 (309)
T ss_dssp             TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTE-------EEE--EESSSS---SSCEETCCCCSSSHHHHHHHHHHCB
T ss_pred             ChhhhccCCCCCCeEEEEEccCCCCCChhHhccc-------ccc--ccccCC---CCCCCCCcccccccccccccccccc
Confidence            4679999999999999999999999999998752       111  111110   1111234567889999999999987


Q ss_pred             ccCCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCeEEEEeccCCCCCCccCHHHHH
Q 005334          159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-----GVNVMSMSIGGGLTDYYRDTVAIG  232 (701)
Q Consensus       159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-----gvdVInlSlG~~~~~~~~d~i~~a  232 (701)
                      ...+       ...+.||||+|+|+.+|++...+ +...+++.+++++++.     ...|+|+|++...   .......+
T Consensus        83 ~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~---~~~~~~~~  152 (309)
T d2ixta1          83 GGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---NNSLISSA  152 (309)
T ss_dssp             CCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS---CCHHHHHH
T ss_pred             cccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccccccc---cccchhcc
Confidence            5332       22348999999999999988776 7788899999998875     3478999998743   23445556


Q ss_pred             HHHHHHCCCEEEEecCCCCCCCCc--cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcC
Q 005334          233 AFTAMAQGIFVSCSAGNGGPYANS--ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAA  310 (701)
Q Consensus       233 ~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~  310 (701)
                      ...+.++|+++|+||||++.....  .+...+++++|++..........                               
T Consensus       153 ~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-------------------------------  201 (309)
T d2ixta1         153 VNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-------------------------------  201 (309)
T ss_dssp             HHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE-------------------------------
T ss_pred             ccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc-------------------------------
Confidence            668889999999999999866543  33456777777763211110000                               


Q ss_pred             CCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 005334          311 NVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGD  390 (701)
Q Consensus       311 ~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~  390 (701)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (309)
T d2ixta1         202 --------------------------------------------------------------------------------  201 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCccccee
Q 005334          391 AIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSF  470 (701)
Q Consensus       391 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y  470 (701)
                                             ..........++++|+..  ....||||+|||.+|+++....             .|
T Consensus       202 -----------------------~~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~~-------------~~  243 (309)
T d2ixta1         202 -----------------------RVADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYNG-------------GY  243 (309)
T ss_dssp             -----------------------EECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTTS-------------SE
T ss_pred             -----------------------cccccccccccccccccc--cCCCcceeecCCCceeeecCCC-------------cc
Confidence                                   000111334566777765  3567999999999999997764             78


Q ss_pred             EeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334          471 NIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP  541 (701)
Q Consensus       471 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~  541 (701)
                      ..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+..     ......++.+|+|++|+
T Consensus       244 ~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~-----g~~~~~~~~~g~G~~~v  309 (309)
T d2ixta1         244 NTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY-----GAAIGDDYASGFGFARV  309 (309)
T ss_dssp             EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST-----TCCSSSBTTTBTCBCCC
T ss_pred             eeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc-----CCccCCCcccCCCEecC
Confidence            9999999999999999999999999999999999999999988654321     12344566889999874


No 9  
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}
Probab=100.00  E-value=9.5e-42  Score=353.64  Aligned_cols=237  Identities=33%  Similarity=0.414  Sum_probs=191.9

Q ss_pred             CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334           85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS  164 (701)
Q Consensus        85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~  164 (701)
                      ...+|+||+|||||||||++||+|.++.       +...+            ....+.|.+||||||||||+|+.     
T Consensus        26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~~-------~~~~~------------~~~~~~d~~gHGT~VAgiia~~~-----   81 (279)
T d2pwaa1          26 DESAGQGSCVYVIDTGIEASHPEFEGRA-------QMVKT------------YYYSSRDGNGHGTHCAGTVGSRT-----   81 (279)
T ss_dssp             CTTTTTTEEEEEEESCCCTTCGGGTTCE-------EEEEE------------SSSCSSCSSSHHHHHHHHHHCTT-----
T ss_pred             cCCCCCCeEEEEECcCCCCCChhhcCCc-------eeccC------------CCCCcccccCccccccccccccc-----
Confidence            4558999999999999999999998751       11111            11235678899999999999863     


Q ss_pred             ccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-------CCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334          165 LFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-------GVNVMSMSIGGGLTDYYRDTVAIGAFTA  236 (701)
Q Consensus       165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-------gvdVInlSlG~~~~~~~~d~i~~a~~~a  236 (701)
                               .|+||+|+|+.+|++.... ...+++..+++++...       +++|+|+|||..    ..+.+..++..+
T Consensus        82 ---------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~  148 (279)
T d2pwaa1          82 ---------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARL  148 (279)
T ss_dssp             ---------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHH
T ss_pred             ---------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc----cccccchhhhhh
Confidence                     6999999999999987765 6778889999998874       356999999974    345566777788


Q ss_pred             HHCCCEEEEecCCCCCCCCc-cccCCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCCC
Q 005334          237 MAQGIFVSCSAGNGGPYANS-ISNVAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSST  315 (701)
Q Consensus       237 ~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~~  315 (701)
                      .++|+++|+||||++..... .+...|++|+|||.+                                            
T Consensus       149 ~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~--------------------------------------------  184 (279)
T d2pwaa1         149 QSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD--------------------------------------------  184 (279)
T ss_dssp             HHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------------------------------
T ss_pred             hhCCcEEEEeCccccccccccCCccCCceEEeeeEe--------------------------------------------
Confidence            99999999999999876433 455778899998732                                            


Q ss_pred             cCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHh
Q 005334          316 SSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNY  395 (701)
Q Consensus       316 ~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~  395 (701)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (279)
T d2pwaa1         185 --------------------------------------------------------------------------------  184 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeecc
Q 005334          396 ISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISG  475 (701)
Q Consensus       396 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG  475 (701)
                                           ..+.++.||++||..        ||+|||.+|+++++.+             .|..++|
T Consensus       185 ---------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~~-------------~~~~~sG  222 (279)
T d2pwaa1         185 ---------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSISG  222 (279)
T ss_dssp             ---------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------------EEEEECS
T ss_pred             ---------------------ecCCCccccCCCCcc--------ccccccccccccccCC-------------cccCCCc
Confidence                                 123678899999975        9999999999998765             7999999


Q ss_pred             ccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCc
Q 005334          476 TSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP  541 (701)
Q Consensus       476 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~  541 (701)
                      ||||||+|||++|||+|++|.++++++|. |++||++.+                ...+|+|++|.
T Consensus       223 TS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~~~~g~g~~n~  271 (279)
T d2pwaa1         223 TSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------LSNIPFGTVNL  271 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------CBSCCTTSCCE
T ss_pred             chhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------CCCCCCCChhh
Confidence            99999999999999999999999887775 777887542                12789999986


No 10 
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}
Probab=100.00  E-value=1.7e-40  Score=350.35  Aligned_cols=295  Identities=25%  Similarity=0.277  Sum_probs=215.4

Q ss_pred             CCCCC-CCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334           81 TLFPT-SEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV  159 (701)
Q Consensus        81 ~~~~~-~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~  159 (701)
                      .+|.. +++|+||+|||||||||++||+|....      .|.+......     ......++.|..||||||||||+|+.
T Consensus        12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~~~~~~~~~-----~~~~~~~~~d~~gHGT~vAgiiag~~   80 (318)
T d1wmda2          12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AFRGKITALY-----ALGRTNNANDTNGHGTHVAGSVLGNG   80 (318)
T ss_dssp             HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TTTTCEEEEE-----ETTTTTCCCCSSSHHHHHHHHHHCCS
T ss_pred             hHHHccCccccCeEEEEEcCCcCCCCcccccCc------ccCCcEEeec-----CCCCCCCCCCCCCCCccceeeccccc
Confidence            35664 899999999999999999999997642      1222111110     01122346788999999999999974


Q ss_pred             cCCCcccccCCCceeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHHcCCeEEEEeccCCCCCCccCHHHHHHHHH
Q 005334          160 VNGASLFGFASGTARGMAAQARVATYKVCWLAG---CFGSDILAGMDKAIEDGVNVMSMSIGGGLTDYYRDTVAIGAFTA  236 (701)
Q Consensus       160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~~~~d~i~~a~~~a  236 (701)
                      ..           ..||||+|+|+.+|+++..+   .....+..+++++...+++|+|+|||.............+...+
T Consensus        81 ~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~~~~~~~~~~~  149 (318)
T d1wmda2          81 ST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYV  149 (318)
T ss_dssp             SS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCCHHHHHHHHHH
T ss_pred             cc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccccccchhHHHHHHHH
Confidence            22           27999999999999998765   34455788999999999999999999876555555666666677


Q ss_pred             HHCCCEEEEecCCCCCCCCcccc--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceeeEEEcCCCCC
Q 005334          237 MAQGIFVSCSAGNGGPYANSISN--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVPIVDAANVSS  314 (701)
Q Consensus       237 ~~~Gi~vV~AAGN~G~~~~~~~~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~l~~~~~~~~  314 (701)
                      .++++++|+|+||.|.....+..  ..++++++.+........                                     
T Consensus       150 ~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------------------  192 (318)
T d1wmda2         150 RKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------------------------------  192 (318)
T ss_dssp             HHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------------------------------
T ss_pred             hhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------------------------------
Confidence            89999999999999876554432  345556555422110000                                     


Q ss_pred             CcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 005334          315 TSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKN  394 (701)
Q Consensus       315 ~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~  394 (701)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (318)
T d1wmda2         193 --------------------------------------------------------------------------------  192 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCcccceeEeec
Q 005334          395 YISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS  474 (701)
Q Consensus       395 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s  474 (701)
                                       .........+..+|++||..  ....|||+.|||.+|+++.......... .......|..++
T Consensus       193 -----------------~~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~  252 (318)
T d1wmda2         193 -----------------GSYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMG  252 (318)
T ss_dssp             -----------------CGGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEEC
T ss_pred             -----------------ccccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCcc-ccCCCcceeecc
Confidence                             00011223667889999987  4678999999999999987765332111 111224678899


Q ss_pred             cccchhhhHhHHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccCC
Q 005334          475 GTSMSCPHVSGLAALLKAAH-----PEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALD  546 (701)
Q Consensus       475 GTSmAaP~VAG~aALl~~~~-----P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~  546 (701)
                      |||||||||||++|||+|++     +.|+|.+||++|++||++...            ..+...||||+||+.+||+
T Consensus       253 GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~------------~~~~~~~G~G~ld~~~Al~  317 (318)
T d1wmda2         253 GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------------GYPNGNQGWGRVTLDKSLN  317 (318)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS------------CSSCTTTTTCBCCHHHHHT
T ss_pred             CcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC------------CCCCCCeeeceecHHHHhC
Confidence            99999999999999999975     468999999999999987642            2344589999999999986


No 11 
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.7e-38  Score=337.03  Aligned_cols=283  Identities=16%  Similarity=0.171  Sum_probs=187.7

Q ss_pred             CCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccc
Q 005334           80 ETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSV  159 (701)
Q Consensus        80 ~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~  159 (701)
                      +.+|..+.+|+||+|||||||||++||+|.++...       +..|..... ...........|..+|||||||||+|..
T Consensus        27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~gHGT~vAgiia~~~   98 (334)
T d1p8ja2          27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP-------GASFDVNDQ-DPDPQPRYTQMNDNRHGTRCAGEVAAVA   98 (334)
T ss_dssp             HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG-------GGCEETTTT-BSCCCCCCCTTCTTCHHHHHHHHHHCCS
T ss_pred             HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcccc-------CCCccccCC-CCccccccccccCccchhhhhhhhhhcc
Confidence            45899999999999999999999999999875221       111221111 1111222335578899999999999986


Q ss_pred             cCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH-cCCeEEEEeccCCCC-CCcc--------CHH
Q 005334          160 VNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE-DGVNVMSMSIGGGLT-DYYR--------DTV  229 (701)
Q Consensus       160 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~-~gvdVInlSlG~~~~-~~~~--------d~i  229 (701)
                      .++.        ...|+||+++++.+|+...   ...+.+.++.++++ ++++++|+|||.... ....        ..+
T Consensus        99 ~n~~--------~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~  167 (334)
T d1p8ja2          99 NNGV--------CGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFF  167 (334)
T ss_dssp             SSSS--------SCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHH
T ss_pred             cccc--------ccccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHH
Confidence            4322        1379999999999998753   34456677777765 689999999997542 1111        112


Q ss_pred             HHHHHHHHHCCCEEEEecCCCCCCCCcccc----CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceee
Q 005334          230 AIGAFTAMAQGIFVSCSAGNGGPYANSISN----VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVP  305 (701)
Q Consensus       230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~  305 (701)
                      ..+...+..+|+++|+||||++........    ..+.+++|++.+                                  
T Consensus       168 ~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------------  213 (334)
T d1p8ja2         168 RGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT----------------------------------  213 (334)
T ss_dssp             HHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC----------------------------------
T ss_pred             HHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc----------------------------------
Confidence            223335567999999999998754432211    223344444321                                  


Q ss_pred             EEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEec
Q 005334          306 IVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG  385 (701)
Q Consensus       306 l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~  385 (701)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (334)
T d1p8ja2         214 --------------------------------------------------------------------------------  213 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCc-----EEecccCCCCCCC
Q 005334          386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVN-----ILAGWTGAVGPTG  460 (701)
Q Consensus       386 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-----I~sa~~~~~~~~~  460 (701)
                                                     ..+..+.||++|+...      .+..+||..     +.+...       
T Consensus       214 -------------------------------~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------  249 (334)
T d1p8ja2         214 -------------------------------QFGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTDLR-------  249 (334)
T ss_dssp             -------------------------------TTSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEETT-------
T ss_pred             -------------------------------cCCceeeecccCCccc------cccccccccccccccccccC-------
Confidence                                           1223445555555431      133334322     222211       


Q ss_pred             CCCCcccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccC
Q 005334          461 LESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVD  540 (701)
Q Consensus       461 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn  540 (701)
                            ...|..++|||||||||||++|||+|++|+|++.|||++|++||++.......+.... ........||+|+||
T Consensus       250 ------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~-~~~~~~~~~G~G~ln  322 (334)
T d1p8ja2         250 ------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG-VGRKVSHSYGYGLLD  322 (334)
T ss_dssp             ------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT-TSCEEBTTTBTCBCC
T ss_pred             ------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccC-CCcccCCCCcceEeC
Confidence                  1378899999999999999999999999999999999999999998765443332221 122233488999999


Q ss_pred             ccccCC
Q 005334          541 PVAALD  546 (701)
Q Consensus       541 ~~~A~~  546 (701)
                      +.+||+
T Consensus       323 a~~Av~  328 (334)
T d1p8ja2         323 AGAMVA  328 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987


No 12 
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.6e-38  Score=338.26  Aligned_cols=287  Identities=17%  Similarity=0.145  Sum_probs=198.2

Q ss_pred             CCCCCCCCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccc
Q 005334           79 SETLFPTSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGS  158 (701)
Q Consensus        79 ~~~~~~~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~  158 (701)
                      +..+|..+++|+||+|||||||||++||+|.++..       ...+|+...    .........+..+||||||++|+|.
T Consensus        35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~HGT~vag~iaa~  103 (339)
T d2id4a2          35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------AEGSWDFND----NTNLPKPRLSDDYHGTRCAGEIAAK  103 (339)
T ss_dssp             CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------GGGCEETTT----TBSCCCCCSTTTTHHHHHHHHHHCC
T ss_pred             HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------ccccccccc----CCCccCCCcccccccceeeeccccc
Confidence            34589999999999999999999999999987522       122232221    1122233556789999999999987


Q ss_pred             ccCCCcccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHHcCCeEEEEeccCCCCC-C---cc----CH-H
Q 005334          159 VVNGASLFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIEDGVNVMSMSIGGGLTD-Y---YR----DT-V  229 (701)
Q Consensus       159 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~~gvdVInlSlG~~~~~-~---~~----d~-i  229 (701)
                      ...+.        ...|+||+|+|+.+++... .....++..++.++++. .+|+|+|+|..... .   ..    .. .
T Consensus       104 ~~~~~--------~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~  173 (339)
T d2id4a2         104 KGNNF--------CGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALV  173 (339)
T ss_dssp             SSSSS--------SCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHH
T ss_pred             ccccc--------cccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCCcccccCccchhHHHHH
Confidence            53332        2479999999999998753 36677788888877665 58999999974311 1   11    11 2


Q ss_pred             HHHHHHHHHCCCEEEEecCCCCCCCCccc--c--CCCceEEecCCccCceeeeEEEcCCCcEEEEEEeecCCCCCCceee
Q 005334          230 AIGAFTAMAQGIFVSCSAGNGGPYANSIS--N--VAPWITTVGAGTLDRNFPTYVSLGNGKSFSGVSLYSRRPLSGSMVP  305 (701)
Q Consensus       230 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~ap~vitVgAst~~~~~~~~~~l~~g~~~~g~s~~~~~~~~~~~~~  305 (701)
                      ..+...+..+|+++|+||||++.......  .  ..+.+++|+++                                   
T Consensus       174 ~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  218 (339)
T d2id4a2         174 KGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI-----------------------------------  218 (339)
T ss_dssp             HHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE-----------------------------------
T ss_pred             HHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc-----------------------------------
Confidence            23333556799999999999875432211  1  12223333221                                   


Q ss_pred             EEEcCCCCCCcCCCccCCCCCCCCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCccccccccccceEEec
Q 005334          306 IVDAANVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVG  385 (701)
Q Consensus       306 l~~~~~~~~~~~~~~C~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~  385 (701)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (339)
T d2id4a2         219 --------------------------------------------------------------------------------  218 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHhHhcCCCCeEEEEecceeecccCCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCc
Q 005334          386 EKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDK  465 (701)
Q Consensus       386 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~  465 (701)
                                                    ...+..+.||++|+..    ...++..+||..+.+.....          
T Consensus       219 ------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~----------  254 (339)
T d2id4a2         219 ------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING----------  254 (339)
T ss_dssp             ------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT----------
T ss_pred             ------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC----------
Confidence                                          1223556667777654    23457778899888776543          


Q ss_pred             ccceeEeeccccchhhhHhHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCccccCccccC
Q 005334          466 RHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAAL  545 (701)
Q Consensus       466 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~  545 (701)
                        ..|..++|||||||||||++|||+|++|+||+.+||.+|++||+.++...................||||+||+.+||
T Consensus       255 --~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av  332 (339)
T d2id4a2         255 --RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLI  332 (339)
T ss_dssp             --CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHH
T ss_pred             --CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCHHHHH
Confidence              368899999999999999999999999999999999999999998764432211111122333447999999999999


Q ss_pred             CC
Q 005334          546 DP  547 (701)
Q Consensus       546 ~~  547 (701)
                      +.
T Consensus       333 ~~  334 (339)
T d2id4a2         333 EM  334 (339)
T ss_dssp             HH
T ss_pred             HH
Confidence            73


No 13 
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}
Probab=99.96  E-value=4.3e-31  Score=281.90  Aligned_cols=161  Identities=16%  Similarity=0.217  Sum_probs=107.9

Q ss_pred             CCCCCCCCEEEEEccCCCCCCCCccCCCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhcccccCCCc
Q 005334           85 TSEVQSEVIVGVLDTGVWPEIKSFDDTGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVVNGAS  164 (701)
Q Consensus        85 ~~~~G~gVvVgVIDtGId~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~~~~~  164 (701)
                      .+++|+||+|||||||||++||+|.+.        |+..         ........+.|.++|+||+++++++...... 
T Consensus        19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---------~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~-   80 (357)
T d1t1ga_          19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---------GVSAPQVVSVSVDGATNQPTGDPNGPDGEVE-   80 (357)
T ss_dssp             TTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---------TCCCCCEEEEESTTCCCCCCSCTTSTHHHHH-
T ss_pred             CCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---------CCCCCCCceeCCCCCCCCCCCcccccccccc-
Confidence            588999999999999999999999753        1100         0001111234566788888887765432110 


Q ss_pred             ccccCCCceeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHH---cCCeEEEEeccCCCCCC---ccCHHHHHHHHHHH
Q 005334          165 LFGFASGTARGMAAQARVATYKVCWLAGCFGSDILAGMDKAIE---DGVNVMSMSIGGGLTDY---YRDTVAIGAFTAMA  238 (701)
Q Consensus       165 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ai~---~gvdVInlSlG~~~~~~---~~d~i~~a~~~a~~  238 (701)
                         .....+.||||+|+|+.+|+..    ....++.+|++++.   .+++|||+|||......   +...+......+..
T Consensus        81 ---~d~~~~~GvAp~A~i~~~~~~~----~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~  153 (357)
T d1t1ga_          81 ---LDIEVAGALAPGAKIAVYFAPN----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAA  153 (357)
T ss_dssp             ---HHHHHHHHHSTTSEEEEEECCS----SHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHH
T ss_pred             ---CCcccceeecccCeEEEEeccc----CCCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHHHHHhhhhhcc
Confidence               0011248999999999999974    33455666666664   58999999999754221   22345556667778


Q ss_pred             CCCEEEEecCCCCCCCC--------ccccCCCceEEecCC
Q 005334          239 QGIFVSCSAGNGGPYAN--------SISNVAPWITTVGAG  270 (701)
Q Consensus       239 ~Gi~vV~AAGN~G~~~~--------~~~~~ap~vitVgAs  270 (701)
                      +|+++|+|+||+|....        ..+...+++++|++.
T Consensus       154 ~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  193 (357)
T d1t1ga_         154 LGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGT  193 (357)
T ss_dssp             HTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEE
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCCcceeeeee
Confidence            99999999999985432        223356788888774


No 14 
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}
Probab=99.94  E-value=2.9e-28  Score=261.73  Aligned_cols=160  Identities=19%  Similarity=0.205  Sum_probs=115.0

Q ss_pred             CCCCCCCEEEEEccCCCCC-CCCccC----CCCCCCCCccceeeEecccCCccCCCCCCCCCCCCCChhHHHHhhccccc
Q 005334           86 SEVQSEVIVGVLDTGVWPE-IKSFDD----TGMGPVPRGWKGVWYEEAVGPIDETAESKSPRDDDGHGTHTSTTAAGSVV  160 (701)
Q Consensus        86 ~~~G~gVvVgVIDtGId~~-Hp~f~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~~gHGThvAgiaAG~~~  160 (701)
                      ..+|+||+|||||+|.++. |++|..    .+++..                + ........+..+||||+++++.+...
T Consensus        21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~e~~ld   83 (369)
T d1ga6a_          21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLASV----------------N-TQTIQTGSSNGDYSDDQQGQGEWDLD   83 (369)
T ss_dssp             SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCC----------------C-EEEEECSCTTSCCCBCHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCCC----------------C-CCeecCCCCCCCCCCCCCcceeeccc
Confidence            4489999999999998765 566642    111100                0 00011133566899999999876531


Q ss_pred             CCCcccccCCCceeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHHc-CCeEEEEeccCCC----CCCccCHHHHHHH
Q 005334          161 NGASLFGFASGTARGMAAQARVATYKVCWLAG-CFGSDILAGMDKAIED-GVNVMSMSIGGGL----TDYYRDTVAIGAF  234 (701)
Q Consensus       161 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ai~~-gvdVInlSlG~~~----~~~~~d~i~~a~~  234 (701)
                      .         ..+.|+||+|+|+++|++.+.+ ....+++++|++|+++ +++|||+|||...    .....+.+..++.
T Consensus        84 ~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~  154 (369)
T d1ga6a_          84 S---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFA  154 (369)
T ss_dssp             H---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHH
T ss_pred             c---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHHHHH
Confidence            1         1247999999999999998776 6778899999999965 7999999999753    2334455667777


Q ss_pred             HHHHCCCEEEEecCCCCCCCC-------------ccccCCCceEEecCCc
Q 005334          235 TAMAQGIFVSCSAGNGGPYAN-------------SISNVAPWITTVGAGT  271 (701)
Q Consensus       235 ~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~ap~vitVgAst  271 (701)
                      +|.++|++||+||||+|....             ..+...|++++|+++.
T Consensus       155 ~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~  204 (369)
T d1ga6a_         155 TAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT  204 (369)
T ss_dssp             HHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred             HHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence            888999999999999986432             2334678999999853


No 15 
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=97.77  E-value=1.5e-05  Score=61.89  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             cccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 005334           22 SAAMLYTYKNVIHGFSTRLTAKEAESLQKQPGIVSVLPEVRYEL   65 (701)
Q Consensus        22 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~   65 (701)
                      +.++.+.|+ .||||+++|++++++.|++.|+|.+||+|..++.
T Consensus        28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a   70 (71)
T d1scjb_          28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE   70 (71)
T ss_dssp             TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred             CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence            578999998 7999999999999999999999999999998764


No 16 
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=97.31  E-value=0.00011  Score=57.06  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=34.8

Q ss_pred             cccEEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eEEEEeCc
Q 005334           22 SAAMLYTYK-NVIHGFSTRLTAKEAESLQKQPG--IVSVLPEV   61 (701)
Q Consensus        22 ~~~~~~~y~-~~~ng~s~~l~~~~~~~L~~~p~--V~~V~~~~   61 (701)
                      ...+.+.|. +.|+||+++|+++.+++|+++|.  |.+||+|.
T Consensus        29 ~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1          29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            456777777 68999999999999999999665  99999986


No 17 
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=96.36  E-value=0.029  Score=45.98  Aligned_cols=78  Identities=12%  Similarity=0.045  Sum_probs=55.1

Q ss_pred             eeEEEEEEEeeCCCCCe--EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEeeeCCC-CCeEEEEEEEEcCCeEE
Q 005334          616 STVKYTRTLTNVGTPTT--YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPS-GTTSFARLQWSDGKHVV  692 (701)
Q Consensus       616 ~~~~~~rtvtnv~~~~~--y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~-~~~~~G~~~~~~~~~~v  692 (701)
                      .+.+++.+|+|.|....  -++.+. .|+|=+++..+.  .+ ++||+++++++++...... +.|.. .+..+++....
T Consensus        17 ~~~~~~vtVtN~g~~~~~~~~~~~~-~P~GW~v~~~~~--~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i-~~~a~~~~~~~   91 (103)
T d1w8oa1          17 QQVTVPVAVTNQSGIAVPKPSLQLD-ASPDWQVQGSVE--PL-MPGRQAKGQVTITVPAGTTPGRYRV-GATLRTSAGNA   91 (103)
T ss_dssp             CEEEEEEEEECCSSSCBSSCEEEEE-CCTTSEEEEEEC--CB-CTTCEEEEEEEEECCTTCCCEEEEE-EEEEEETTEEE
T ss_pred             CeEEEEEEEEeCCCCceeeeeEEEc-CCCCccccCcce--ee-CCCCcEEEEEEEECCCCCCCceEEE-EEEEEeCCcce
Confidence            68999999999988764  677778 999998865554  45 7999999999999875443 33333 35555554444


Q ss_pred             EeeEEE
Q 005334          693 GSPIAF  698 (701)
Q Consensus       693 ~~P~~v  698 (701)
                      ...+-+
T Consensus        92 s~t~tv   97 (103)
T d1w8oa1          92 STTFTV   97 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433


No 18 
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.18  E-value=0.0034  Score=57.56  Aligned_cols=70  Identities=14%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeecCCCCcc------------------cc----------------
Q 005334          328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEE------------------LV----------------  373 (701)
Q Consensus       328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------~~----------------  373 (701)
                      ..+++|||+|+++|.+.+.+|..+|++.||.|+|+|.+..+...                  +.                
T Consensus        58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~  137 (193)
T d1de4c2          58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS  137 (193)
T ss_dssp             SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred             ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence            35789999999999999999999999999999999976543110                  00                


Q ss_pred             ccccccceEEechhhHHHHHHhHh
Q 005334          374 ADAQLLPSANVGEKAGDAIKNYIS  397 (701)
Q Consensus       374 ~~~~~~p~~~i~~~~g~~l~~~~~  397 (701)
                      ...-.||+.-|+..+++.|+..++
T Consensus       138 ~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         138 SGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCcCCeeeCCHHHHHHHHHHcC
Confidence            012347999999999999998874


No 19 
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.37  E-value=0.012  Score=55.52  Aligned_cols=38  Identities=32%  Similarity=0.367  Sum_probs=35.6

Q ss_pred             CCCccceEEEEecCCCchhhhhHHHhHcCceEEEEeec
Q 005334          328 PAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNT  365 (701)
Q Consensus       328 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~  365 (701)
                      .-+++|||+|+++|.+.+.+|..+|++.||.|+|++++
T Consensus        76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD  113 (233)
T d3bi1a2          76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD  113 (233)
T ss_dssp             CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence            35899999999999999999999999999999999986


No 20 
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=34.45  E-value=56  Score=26.21  Aligned_cols=52  Identities=15%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             eeEEEEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEee
Q 005334          616 STVKYTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTAS  671 (701)
Q Consensus       616 ~~~~~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~  671 (701)
                      ...+...+++|.++..- |+++.. .|.-.  .|.|..=.+ .++++..++|++.+.
T Consensus        23 ~~~~~~l~l~N~s~~~vafKvktt-~p~~y--~v~P~~G~i-~p~~~~~i~V~~~~~   75 (124)
T d1grwa_          23 DKHTYHIKVINSSARRIGYGIKTT-NMKRL--GVDPPCGVL-DPKEAVLLAVSCDAF   75 (124)
T ss_dssp             SCEEEEEEEEECSSSCEEEEEEES-CTTTE--EEESSEEEE-CTTCEEEEEEEECCC
T ss_pred             cEEEEEEEEECCCCCeEEEEEEeC-CCceE--EEECCCCEE-CCCCEEEEEEEEecC
Confidence            35666789999988877 999988 88755  556776555 689999999999763


No 21 
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=31.16  E-value=12  Score=37.41  Aligned_cols=31  Identities=29%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CCCceecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 005334          417 PSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGA  455 (701)
Q Consensus       417 ~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~  455 (701)
                      ....++.||++|+..        ||.|||.+|+++.+..
T Consensus       182 ~~~~~~~~s~~g~~v--------dv~apG~~i~st~~~g  212 (435)
T d1v6ca_         182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG  212 (435)
T ss_dssp             TTCCBCTTSCCCSSE--------EEEEECSSEEEECSTT
T ss_pred             CCCCcccccCCCCce--------EEeecccceeeeeecC
Confidence            445788999999876        9999999999987654


No 22 
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=30.20  E-value=1e+02  Score=23.87  Aligned_cols=48  Identities=23%  Similarity=0.200  Sum_probs=37.0

Q ss_pred             EEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEee
Q 005334          620 YTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTAS  671 (701)
Q Consensus       620 ~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~  671 (701)
                      .+.+++|.++..- |+++.. .|.-.  .|.|..=.+ +++++..+.|+....
T Consensus        17 ~~~~l~N~s~~~vafKvKtt-~~~~y--~V~P~~G~i-~P~~~~~I~I~~~~~   65 (107)
T d1rowa_          17 STHKLVNGGAEKIVFKIKSS-NNNEY--RIAPVFGFV-DPSGSKDVVITRTAG   65 (107)
T ss_dssp             EEEEEEECSSSCEEEEEEES-CSSSE--EEECSEEEE-CTTEEEEEEEEECSC
T ss_pred             EEEEEEcCCCCeEEEEEEcC-CCCeE--EEECCEEEE-CCCCEEEEEEEeCCC
Confidence            4678999988877 999987 77655  556777666 789999988877543


No 23 
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=28.42  E-value=99  Score=23.96  Aligned_cols=48  Identities=15%  Similarity=0.065  Sum_probs=36.9

Q ss_pred             EEEEEeeCCCCCe-EEEEEEecCCceEEEEeeCeEEEeecceeEEEEEEEEee
Q 005334          620 YTRTLTNVGTPTT-YMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTAS  671 (701)
Q Consensus       620 ~~rtvtnv~~~~~-y~~~v~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~  671 (701)
                      -+.|++|.++..- |+++.. .|.-.  .|.|..=.+ +++++..+.|+....
T Consensus        20 ~~~~l~N~s~~~vafKiktt-~~~~y--~V~P~~G~I-~P~~~~~i~I~~~~~   68 (109)
T d1m1sa_          20 STHNITSESDSRLAFKVKSS-NNEHY--RVRPVYGFV-DAKGKSKLDINRLPG   68 (109)
T ss_dssp             EEEEEEECSSSEEEEEEEES-CTTTE--EEECSEEEE-CTTCEEEEEEEECSC
T ss_pred             EEEEEECCCCCcEEEEEEcC-CCCeE--EEeCCeeEE-CCCCeEEEEEEeCCC
Confidence            3568999988776 998887 77655  556777666 789999999988654


No 24 
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.76  E-value=48  Score=23.08  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             chhhhHhHHHHHHHhhCCCCCHHHHHHHHHhcc
Q 005334          478 MSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA  510 (701)
Q Consensus       478 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA  510 (701)
                      .|+|-|-.-.+-+++.+|.+-.-|||+.|..-.
T Consensus         9 vaTP~V~~kI~~yK~enP~iFaWEIRd~Li~eg   41 (61)
T d1k78a2           9 VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAER   41 (61)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Confidence            579999999999999999999999999998754


No 25 
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49  E-value=30  Score=24.12  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=21.2

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHhcc
Q 005334          486 LAALLKAAHPEWSPSAIKSALMTTA  510 (701)
Q Consensus       486 ~aALl~~~~P~~sp~~Ik~~L~~TA  510 (701)
                      ...-|++.||++...-|+..|...-
T Consensus        12 ~i~~LkeMFP~~D~~vI~~VL~a~~   36 (59)
T d1wgla_          12 DLKAIQDMFPNMDQEVIRSVLEAQR   36 (59)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHHTTTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence            4567899999999999999998753


No 26 
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Probab=20.55  E-value=31  Score=28.76  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             eeccccchhhhHhHHHHHHHhhCCCCCHHHHHHH
Q 005334          472 IISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSA  505 (701)
Q Consensus       472 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~  505 (701)
                      .+.|.|= |++|-|++|||...+-..+|++|.++
T Consensus        66 ~f~~dSd-a~IvkGl~ail~~~~~g~t~~eI~~~   98 (144)
T d1mzga_          66 ELQGDSD-AAIVKGLIAVVFILYDQMTPQDIVNF   98 (144)
T ss_dssp             EEEEEES-SHHHHHHHHHHHHHTTTCCHHHHHHC
T ss_pred             EEEeeCc-hHHHHHHHHHHHHHHCCCCHHHHHhc
Confidence            3445553 58999999999999999999998764


Done!