BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005336
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 172 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 228
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168
Query: 229 -----ATSFN---KSVLQSTIPLLELIP 248
AT+F VL +P L L P
Sbjct: 169 ANPESATTFKVLAAKVLNLVLPNLSLGP 196
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 172 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 228
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150
Query: 229 -----ATSFN---KSVLQSTIPLLELIP 248
AT+F VL S +P L P
Sbjct: 151 ANPESATTFKVLAAKVLNSVLPNLSSGP 178
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 172 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 228
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 108 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 167
Query: 229 -----ATSFN---KSVLQSTIPLLELIP 248
AT+F VL +P L L P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 172 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPD------IDLVLIL 225
+ F V+ V V S P PV+L+G S G IA+ AA P + L+L
Sbjct: 108 SDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL 167
Query: 226 VNP--ATSFN---KSVLQSTIPLLELIP 248
NP AT+F VL +P L L P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 195 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 251
R +YLVG S G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 195 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 251
R +YLVG + G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 195 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 251
R +YLVG + G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 193 PKRPVYLVGESLGACIALAVAARNPDIDLVLILV 226
P +P+ LVG S+GA +A A+A+ P LILV
Sbjct: 93 PDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 618 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 676
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 73 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 131
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 618 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 676
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 82 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 618 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 676
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 82 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|2XFL|A Chain A, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|B Chain B, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|C Chain C, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|D Chain D, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|E Chain E, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|F Chain F, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|G Chain G, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|H Chain H, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
Length = 142
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 368 LEDGVDLVTIIKGASYYRRGRNHDYVSDFMPPTSSEFNKICEDFRWMRVLSSPVMLSTLA 427
L DG+ LVT+ A +Y G D V M + ++I F ++RV P L LA
Sbjct: 48 LADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRVAPGPPTL--LA 105
Query: 428 NGK 430
G+
Sbjct: 106 QGR 108
>pdb|2XEM|A Chain A, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|B Chain B, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|C Chain C, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|D Chain D, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
Length = 150
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 368 LEDGVDLVTIIKGASYYRRGRNHDYVSDFMPPTSSEFNKICEDFRWMRVLSSPVMLSTLA 427
L DG+ LVT+ A +Y G D V M + ++I F ++RV P L LA
Sbjct: 56 LADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRVAPGPPTL--LA 113
Query: 428 NGK 430
G+
Sbjct: 114 QGR 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,014,824
Number of Sequences: 62578
Number of extensions: 835620
Number of successful extensions: 1843
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1832
Number of HSP's gapped (non-prelim): 13
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)