Query 005337
Match_columns 701
No_of_seqs 343 out of 1519
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 21:52:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 138.5 12.0 85 367-452 28-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.3E-13 7.1E-18 142.1 12.0 82 370-452 266-351 (352)
3 KOG0149 Predicted RNA-binding 99.4 2.3E-13 4.9E-18 138.4 7.1 79 368-448 7-89 (247)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.4E-12 3E-17 137.4 11.0 80 372-452 2-85 (352)
5 KOG0111 Cyclophilin-type pepti 99.4 2E-13 4.3E-18 137.8 4.0 81 371-452 8-92 (298)
6 KOG0125 Ataxin 2-binding prote 99.4 1E-12 2.2E-17 138.7 8.2 80 370-450 93-174 (376)
7 PF00076 RRM_1: RNA recognitio 99.3 3.9E-12 8.4E-17 102.8 8.5 67 376-443 1-70 (70)
8 PLN03120 nucleic acid binding 99.3 4E-12 8.6E-17 132.0 10.4 76 373-450 4-80 (260)
9 TIGR01659 sex-lethal sex-letha 99.3 3.1E-12 6.7E-17 138.0 10.0 80 370-450 104-187 (346)
10 TIGR01659 sex-lethal sex-letha 99.3 4.2E-12 9.1E-17 137.0 9.8 83 371-454 191-279 (346)
11 KOG0153 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 130.7 10.6 81 367-450 222-303 (377)
12 TIGR01628 PABP-1234 polyadenyl 99.2 2.1E-11 4.5E-16 137.6 10.6 88 370-458 282-372 (562)
13 TIGR01645 half-pint poly-U bin 99.2 1.9E-11 4E-16 140.0 10.2 79 371-450 202-284 (612)
14 TIGR01645 half-pint poly-U bin 99.2 4.9E-11 1.1E-15 136.6 11.6 77 371-448 105-185 (612)
15 PLN03121 nucleic acid binding 99.2 8.2E-11 1.8E-15 121.0 10.4 78 371-450 3-81 (243)
16 PLN03213 repressor of silencin 99.2 5.2E-11 1.1E-15 130.7 8.9 78 372-450 9-88 (759)
17 PF14259 RRM_6: RNA recognitio 99.1 1.6E-10 3.4E-15 95.0 8.6 67 376-443 1-70 (70)
18 smart00362 RRM_2 RNA recogniti 99.1 2.3E-10 5.1E-15 90.3 9.3 70 375-445 1-72 (72)
19 KOG4207 Predicted splicing fac 99.1 7.3E-11 1.6E-15 118.6 6.9 79 371-450 11-93 (256)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.2E-10 4.7E-15 128.0 11.5 81 370-451 272-352 (481)
21 TIGR01628 PABP-1234 polyadenyl 99.1 2E-10 4.3E-15 129.7 10.8 88 370-458 175-269 (562)
22 COG0724 RNA-binding proteins ( 99.1 2.6E-10 5.7E-15 109.8 9.9 76 373-449 115-194 (306)
23 KOG0107 Alternative splicing f 99.1 1.5E-10 3.2E-15 113.9 8.0 79 372-452 9-87 (195)
24 KOG0126 Predicted RNA-binding 99.1 4.5E-11 9.7E-16 118.2 4.2 78 373-451 35-116 (219)
25 KOG0148 Apoptosis-promoting RN 99.1 1E-10 2.3E-15 121.2 7.0 76 375-451 64-143 (321)
26 TIGR01622 SF-CC1 splicing fact 99.1 3.5E-10 7.6E-15 123.9 11.3 80 371-451 184-267 (457)
27 KOG0148 Apoptosis-promoting RN 99.1 2.6E-10 5.5E-15 118.4 9.5 85 368-455 159-243 (321)
28 KOG0113 U1 small nuclear ribon 99.1 2.3E-10 5E-15 119.9 9.0 82 370-452 98-183 (335)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.8E-10 1.1E-14 124.2 12.0 80 371-451 293-376 (509)
30 PF13893 RRM_5: RNA recognitio 99.1 4.3E-10 9.2E-15 89.7 7.9 56 391-447 1-56 (56)
31 KOG0122 Translation initiation 99.1 3.3E-10 7.1E-15 116.2 9.0 77 373-450 189-269 (270)
32 KOG0144 RNA-binding protein CU 99.1 1.4E-10 2.9E-15 126.1 6.4 87 371-458 122-214 (510)
33 TIGR01622 SF-CC1 splicing fact 99.1 5.3E-10 1.2E-14 122.5 10.5 79 370-450 86-168 (457)
34 KOG0124 Polypyrimidine tract-b 99.1 1.8E-10 3.8E-15 123.1 6.4 165 375-563 115-291 (544)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 5.4E-10 1.2E-14 124.8 10.5 75 373-450 2-78 (481)
36 smart00360 RRM RNA recognition 99.0 1.1E-09 2.4E-14 86.0 8.7 63 383-445 5-71 (71)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 8.3E-10 1.8E-14 126.1 10.7 77 371-452 231-309 (578)
38 TIGR01648 hnRNP-R-Q heterogene 99.0 7.3E-10 1.6E-14 126.6 9.8 79 370-449 55-137 (578)
39 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.9E-14 91.4 7.8 57 388-444 2-69 (70)
40 cd00590 RRM RRM (RNA recogniti 99.0 3.2E-09 6.9E-14 84.2 9.6 71 375-446 1-74 (74)
41 KOG0131 Splicing factor 3b, su 99.0 5.4E-10 1.2E-14 110.6 5.2 77 372-449 8-88 (203)
42 KOG0108 mRNA cleavage and poly 98.9 2E-09 4.3E-14 119.4 8.8 84 370-454 14-102 (435)
43 KOG0121 Nuclear cap-binding pr 98.9 1.7E-09 3.7E-14 102.1 6.2 78 370-448 33-114 (153)
44 KOG4205 RNA-binding protein mu 98.9 8.3E-10 1.8E-14 117.8 4.3 81 372-454 5-89 (311)
45 KOG0114 Predicted RNA-binding 98.9 6.2E-09 1.3E-13 95.4 8.1 81 370-451 15-96 (124)
46 KOG0147 Transcriptional coacti 98.8 5.9E-09 1.3E-13 116.3 6.7 79 376-455 281-363 (549)
47 TIGR01642 U2AF_lg U2 snRNP aux 98.7 2.8E-08 6E-13 110.4 9.6 78 368-449 170-259 (509)
48 KOG0117 Heterogeneous nuclear 98.7 2.3E-08 5E-13 109.5 8.5 78 371-453 257-334 (506)
49 KOG0127 Nucleolar protein fibr 98.7 2.3E-08 5E-13 111.6 8.4 81 373-454 117-200 (678)
50 KOG0145 RNA-binding protein EL 98.7 4.4E-08 9.5E-13 101.6 8.9 82 370-452 38-123 (360)
51 KOG4205 RNA-binding protein mu 98.7 1.6E-08 3.5E-13 108.1 5.8 82 372-455 96-181 (311)
52 KOG0117 Heterogeneous nuclear 98.7 4.4E-08 9.5E-13 107.4 9.1 79 370-449 80-163 (506)
53 KOG0132 RNA polymerase II C-te 98.7 5.7E-08 1.2E-12 111.8 8.8 85 367-454 415-499 (894)
54 KOG0123 Polyadenylate-binding 98.6 6.8E-08 1.5E-12 105.6 8.7 77 376-454 79-157 (369)
55 KOG0105 Alternative splicing f 98.6 4.9E-08 1.1E-12 97.2 6.8 80 370-450 3-83 (241)
56 KOG0145 RNA-binding protein EL 98.6 1.1E-07 2.4E-12 98.7 9.1 77 373-450 278-358 (360)
57 KOG0124 Polypyrimidine tract-b 98.6 2.8E-08 6.2E-13 106.6 5.0 127 319-448 155-288 (544)
58 KOG0127 Nucleolar protein fibr 98.6 5.2E-08 1.1E-12 108.8 6.8 79 374-453 6-88 (678)
59 KOG0130 RNA-binding protein RB 98.6 4.5E-08 9.9E-13 93.4 5.4 86 366-452 65-154 (170)
60 KOG0144 RNA-binding protein CU 98.6 9E-08 1.9E-12 104.6 7.1 85 369-454 30-121 (510)
61 KOG4206 Spliceosomal protein s 98.6 1.5E-07 3.2E-12 95.9 7.7 83 371-454 7-94 (221)
62 KOG4212 RNA-binding protein hn 98.4 4.8E-07 1.1E-11 99.1 8.1 79 368-447 39-121 (608)
63 KOG0109 RNA-binding protein LA 98.4 4.7E-07 1E-11 95.3 6.3 74 375-453 4-77 (346)
64 KOG0415 Predicted peptidyl pro 98.4 6.7E-07 1.5E-11 96.0 7.1 80 370-450 236-319 (479)
65 KOG0131 Splicing factor 3b, su 98.3 5E-07 1.1E-11 89.9 5.1 83 371-454 94-181 (203)
66 KOG0109 RNA-binding protein LA 98.3 6.5E-07 1.4E-11 94.3 5.7 81 368-453 73-153 (346)
67 KOG0123 Polyadenylate-binding 98.3 1.2E-06 2.6E-11 95.9 8.0 73 375-451 3-76 (369)
68 KOG0110 RNA-binding protein (R 98.3 1.9E-06 4.2E-11 98.9 8.1 73 375-448 517-596 (725)
69 KOG0146 RNA-binding protein ET 98.2 2.8E-06 6E-11 88.8 6.7 82 372-454 18-105 (371)
70 KOG0110 RNA-binding protein (R 98.2 1.5E-06 3.3E-11 99.8 4.9 79 373-452 613-695 (725)
71 KOG4454 RNA binding protein (R 98.1 1.7E-06 3.7E-11 88.3 3.6 85 366-452 2-89 (267)
72 KOG4661 Hsp27-ERE-TATA-binding 98.1 4E-06 8.6E-11 94.3 6.4 77 372-449 404-484 (940)
73 KOG0146 RNA-binding protein ET 98.0 3.5E-06 7.6E-11 88.1 4.3 80 372-452 284-367 (371)
74 KOG4208 Nucleolar RNA-binding 98.0 1.2E-05 2.7E-10 81.4 7.2 78 372-450 48-130 (214)
75 KOG0116 RasGAP SH3 binding pro 98.0 1.5E-05 3.2E-10 88.6 7.4 74 374-449 289-366 (419)
76 KOG0106 Alternative splicing f 97.8 1.6E-05 3.6E-10 81.4 4.3 71 375-450 3-73 (216)
77 KOG0151 Predicted splicing reg 97.8 4.6E-05 1E-09 87.9 7.7 81 368-449 169-256 (877)
78 KOG0226 RNA-binding proteins [ 97.7 2.3E-05 5E-10 81.6 4.1 84 374-458 191-278 (290)
79 KOG0533 RRM motif-containing p 97.7 0.00011 2.4E-09 76.7 8.3 80 368-448 78-160 (243)
80 KOG4212 RNA-binding protein hn 97.7 6.8E-05 1.5E-09 82.8 6.9 76 368-446 531-607 (608)
81 KOG4209 Splicing factor RNPS1, 97.7 5E-05 1.1E-09 78.6 5.6 78 371-450 99-180 (231)
82 KOG2135 Proteins containing th 97.5 0.0002 4.4E-09 79.8 7.3 82 367-451 366-447 (526)
83 KOG0147 Transcriptional coacti 97.4 6.1E-05 1.3E-09 85.0 2.1 75 373-449 179-257 (549)
84 PF00642 zf-CCCH: Zinc finger 97.3 6.6E-05 1.4E-09 53.1 0.2 24 230-253 2-26 (27)
85 KOG4660 Protein Mei2, essentia 97.2 0.0002 4.3E-09 81.1 3.0 74 368-443 70-143 (549)
86 KOG1190 Polypyrimidine tract-b 97.1 0.0014 3.1E-08 72.2 8.2 76 373-449 297-372 (492)
87 KOG1548 Transcription elongati 96.9 0.0025 5.4E-08 69.2 7.5 78 370-448 131-219 (382)
88 KOG4211 Splicing factor hnRNP- 96.8 0.0029 6.3E-08 71.2 7.9 68 381-450 17-86 (510)
89 smart00356 ZnF_C3H1 zinc finge 96.8 0.00065 1.4E-08 46.9 1.7 22 232-253 5-26 (27)
90 KOG1457 RNA binding protein (c 96.7 0.0058 1.3E-07 63.3 8.2 82 371-453 32-121 (284)
91 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0038 8.2E-08 50.7 5.4 51 374-429 2-53 (53)
92 KOG4210 Nuclear localization s 96.5 0.0015 3.2E-08 69.8 2.8 82 371-453 182-267 (285)
93 KOG4211 Splicing factor hnRNP- 96.5 0.013 2.9E-07 66.1 9.8 117 329-448 59-180 (510)
94 COG5175 MOT2 Transcriptional r 96.4 0.0063 1.4E-07 66.0 6.6 81 370-450 111-203 (480)
95 KOG0106 Alternative splicing f 96.4 0.0021 4.7E-08 66.1 2.9 67 374-445 100-166 (216)
96 PF04059 RRM_2: RNA recognitio 96.2 0.021 4.6E-07 52.2 8.2 75 373-448 1-85 (97)
97 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.019 4.1E-07 52.7 7.7 64 379-448 13-90 (100)
98 KOG2185 Predicted RNA-processi 96.2 0.0022 4.7E-08 70.8 1.8 25 230-254 139-163 (486)
99 PF11608 Limkain-b1: Limkain b 96.0 0.013 2.9E-07 52.6 5.4 72 374-452 3-79 (90)
100 KOG1548 Transcription elongati 96.0 0.029 6.2E-07 61.2 8.8 85 367-451 259-353 (382)
101 KOG0120 Splicing factor U2AF, 95.7 0.023 5.1E-07 64.9 7.4 61 389-449 424-491 (500)
102 PF00658 PABP: Poly-adenylate 95.7 0.01 2.2E-07 51.5 3.3 50 8-60 22-71 (72)
103 KOG1456 Heterogeneous nuclear 95.5 0.077 1.7E-06 58.6 9.9 78 372-450 286-363 (494)
104 PF14608 zf-CCCH_2: Zinc finge 95.3 0.0092 2E-07 39.3 1.5 18 233-252 1-18 (19)
105 KOG1995 Conserved Zn-finger pr 95.1 0.026 5.6E-07 61.7 4.7 83 370-453 63-157 (351)
106 KOG2314 Translation initiation 95.0 0.025 5.4E-07 64.8 4.7 59 389-447 79-141 (698)
107 PF08952 DUF1866: Domain of un 94.7 0.1 2.2E-06 51.2 7.4 75 370-449 24-106 (146)
108 KOG0120 Splicing factor U2AF, 94.7 0.024 5.2E-07 64.8 3.6 81 371-452 287-371 (500)
109 smart00517 PolyA C-terminal do 94.7 0.022 4.7E-07 48.6 2.3 50 8-60 11-60 (64)
110 KOG4307 RNA binding protein RB 94.4 0.05 1.1E-06 63.7 5.2 81 371-452 432-516 (944)
111 KOG1677 CCCH-type Zn-finger pr 94.2 0.022 4.8E-07 61.0 1.8 28 227-254 173-201 (332)
112 PF08777 RRM_3: RNA binding mo 94.2 0.11 2.3E-06 47.9 5.9 55 376-433 4-58 (105)
113 KOG0129 Predicted RNA-binding 93.9 0.14 3E-06 58.5 7.2 105 370-481 256-370 (520)
114 KOG4206 Spliceosomal protein s 93.9 0.19 4.1E-06 52.2 7.6 77 370-448 143-220 (221)
115 KOG1855 Predicted RNA-binding 93.5 0.044 9.6E-07 61.2 2.4 63 371-434 229-308 (484)
116 KOG2202 U2 snRNP splicing fact 92.8 0.045 9.8E-07 57.7 1.1 59 389-447 83-145 (260)
117 KOG0129 Predicted RNA-binding 92.7 0.32 7E-06 55.6 7.7 87 358-448 357-452 (520)
118 KOG1457 RNA binding protein (c 91.3 0.21 4.6E-06 52.1 4.0 69 368-437 205-273 (284)
119 KOG1996 mRNA splicing factor [ 90.9 0.5 1.1E-05 51.1 6.3 62 388-449 300-366 (378)
120 KOG1456 Heterogeneous nuclear 90.8 1.1 2.4E-05 49.8 9.1 79 372-451 119-200 (494)
121 KOG3152 TBP-binding protein, a 90.1 0.17 3.6E-06 53.6 2.0 68 373-441 74-157 (278)
122 PF08675 RNA_bind: RNA binding 90.1 1.1 2.4E-05 40.5 6.8 57 371-433 7-63 (87)
123 KOG1039 Predicted E3 ubiquitin 87.4 0.21 4.6E-06 55.0 0.7 22 232-253 9-30 (344)
124 KOG4307 RNA binding protein RB 86.6 2 4.2E-05 51.1 7.7 67 380-446 873-943 (944)
125 KOG1190 Polypyrimidine tract-b 86.4 1.7 3.7E-05 48.9 6.8 77 371-448 412-489 (492)
126 KOG4849 mRNA cleavage factor I 85.8 0.86 1.9E-05 50.3 4.2 74 374-448 81-160 (498)
127 KOG2068 MOT2 transcription fac 85.8 0.29 6.3E-06 53.4 0.6 80 371-450 75-163 (327)
128 KOG4285 Mitotic phosphoprotein 85.5 1.6 3.4E-05 47.6 5.8 61 387-450 209-270 (350)
129 PF15023 DUF4523: Protein of u 85.4 3.3 7.1E-05 41.1 7.5 75 370-448 83-160 (166)
130 KOG4676 Splicing factor, argin 84.6 1.5 3.2E-05 49.1 5.3 74 375-450 9-89 (479)
131 PF04847 Calcipressin: Calcipr 84.2 2.8 6E-05 42.6 6.7 62 387-450 8-71 (184)
132 PF10309 DUF2414: Protein of u 81.6 5.9 0.00013 33.8 6.6 54 374-432 6-62 (62)
133 KOG0112 Large RNA-binding prot 81.4 1.6 3.5E-05 53.0 4.3 83 369-454 451-535 (975)
134 KOG2891 Surface glycoprotein [ 81.2 1.4 3.1E-05 47.4 3.5 35 374-408 150-195 (445)
135 KOG2193 IGF-II mRNA-binding pr 81.1 2.7 5.9E-05 47.5 5.7 77 374-453 2-79 (584)
136 KOG0128 RNA-binding protein SA 78.1 0.35 7.6E-06 58.1 -2.4 67 371-438 665-735 (881)
137 KOG1365 RNA-binding protein Fu 78.0 4.3 9.3E-05 45.5 5.9 75 370-445 156-238 (508)
138 KOG0115 RNA-binding protein p5 76.7 1.6 3.4E-05 46.6 2.1 74 374-448 32-112 (275)
139 KOG0128 RNA-binding protein SA 76.2 1.4 2.9E-05 53.3 1.7 75 373-448 736-813 (881)
140 PF03880 DbpA: DbpA RNA bindin 75.6 7.9 0.00017 33.2 5.8 68 375-447 2-74 (74)
141 KOG2494 C3H1-type Zn-finger pr 73.9 1.1 2.4E-05 49.0 0.2 23 231-253 37-60 (331)
142 KOG1763 Uncharacterized conser 73.0 1.3 2.8E-05 48.0 0.4 22 232-253 93-114 (343)
143 KOG2416 Acinus (induces apopto 68.7 4.7 0.0001 47.3 3.7 81 366-449 437-521 (718)
144 COG5084 YTH1 Cleavage and poly 67.8 2.6 5.7E-05 45.6 1.4 24 231-254 134-158 (285)
145 KOG0112 Large RNA-binding prot 67.8 1.3 2.9E-05 53.7 -0.9 79 370-449 369-450 (975)
146 KOG1040 Polyadenylation factor 64.3 4.1 8.9E-05 44.8 2.1 25 228-252 74-98 (325)
147 KOG0105 Alternative splicing f 60.9 26 0.00056 36.3 6.8 69 375-447 117-187 (241)
148 KOG1365 RNA-binding protein Fu 58.5 9.6 0.00021 42.9 3.6 73 375-448 282-360 (508)
149 KOG1595 CCCH-type Zn-finger pr 57.2 5.3 0.00011 46.4 1.4 25 229-253 234-258 (528)
150 KOG1492 C3H1-type Zn-finger pr 55.7 4.9 0.00011 42.2 0.7 22 232-253 207-229 (377)
151 PF07576 BRAP2: BRCA1-associat 55.5 51 0.0011 31.0 7.3 65 375-439 14-81 (110)
152 KOG4210 Nuclear localization s 49.8 9.2 0.0002 41.3 1.7 80 371-451 86-169 (285)
153 COG5152 Uncharacterized conser 48.8 6.9 0.00015 40.6 0.6 23 231-253 141-164 (259)
154 PF10650 zf-C3H1: Putative zin 48.6 9.9 0.00021 26.7 1.1 19 233-252 2-21 (23)
155 KOG2591 c-Mpl binding protein, 48.1 23 0.00049 41.7 4.5 70 371-443 172-245 (684)
156 KOG1040 Polyadenylation factor 44.0 8.8 0.00019 42.3 0.5 25 229-253 132-156 (325)
157 KOG1677 CCCH-type Zn-finger pr 43.2 12 0.00025 40.4 1.2 27 227-253 128-156 (332)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 40.2 30 0.00066 34.7 3.6 67 372-439 6-82 (176)
159 COG5084 YTH1 Cleavage and poly 39.0 15 0.00033 39.9 1.3 24 230-253 103-126 (285)
160 KOG4454 RNA binding protein (R 38.8 6.4 0.00014 41.5 -1.4 64 382-445 92-158 (267)
161 COG5252 Uncharacterized conser 37.2 12 0.00026 39.8 0.2 22 232-253 86-107 (299)
162 KOG4574 RNA-binding protein (c 35.3 24 0.00053 43.3 2.3 76 371-449 296-373 (1007)
163 KOG2333 Uncharacterized conser 32.9 36 0.00078 39.7 3.1 28 233-260 116-144 (614)
164 KOG2494 C3H1-type Zn-finger pr 30.0 24 0.00052 39.0 1.1 23 230-253 70-92 (331)
165 KOG1813 Predicted E3 ubiquitin 28.5 19 0.00042 39.3 0.1 25 229-253 184-209 (313)
166 KOG2253 U1 snRNP complex, subu 28.4 27 0.00059 41.7 1.2 70 371-446 38-107 (668)
167 KOG1492 C3H1-type Zn-finger pr 27.9 22 0.00048 37.4 0.4 22 232-254 262-283 (377)
168 PF15513 DUF4651: Domain of un 27.6 78 0.0017 27.3 3.5 18 389-406 9-26 (62)
169 PF01837 DUF39: Domain of unkn 21.4 91 0.002 34.9 3.5 94 368-469 240-338 (340)
170 PF11767 SET_assoc: Histone ly 20.3 5.7E+02 0.012 22.1 7.5 57 383-444 9-65 (66)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.3e-14 Score=138.48 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 005337 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (701)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L 442 (701)
++....+++|||+++ +++++|++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 28 ~~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 28 GSLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455566789999966 678999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 005337 443 LVKPYKEKGK 452 (701)
Q Consensus 443 ~Vk~Ak~K~k 452 (701)
+|+++.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.46 E-value=3.3e-13 Score=142.10 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=75.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
....++|||+++ ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.|||..|+||.|+|.
T Consensus 266 ~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 266 DGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344568999977 578999999999999999999999987 799999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005337 446 PYKEKGK 452 (701)
Q Consensus 446 ~Ak~K~k 452 (701)
++..|.+
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9988765
No 3
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.3e-13 Score=138.38 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~ 443 (701)
..+...++|||+++ .|+++.|+|++||++||+|+++.|+.| |+||||||||.+.|.|.+|++. ....|+||+..
T Consensus 7 ~~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aN 84 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKAN 84 (247)
T ss_pred CCCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccc
Confidence 35677899999976 699999999999999999999999997 9999999999999999999999 56789999999
Q ss_pred EEecc
Q 005337 444 VKPYK 448 (701)
Q Consensus 444 Vk~Ak 448 (701)
|+.|.
T Consensus 85 cnlA~ 89 (247)
T KOG0149|consen 85 CNLAS 89 (247)
T ss_pred cchhh
Confidence 98875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=1.4e-12 Score=137.43 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
..++|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3689999977 678999999999999999999999986 68999999999999999999999999999999999998
Q ss_pred ccCCC
Q 005337 448 KEKGK 452 (701)
Q Consensus 448 k~K~k 452 (701)
+++..
T Consensus 81 ~~~~~ 85 (352)
T TIGR01661 81 RPSSD 85 (352)
T ss_pred ccccc
Confidence 76653
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2e-13 Score=137.75 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
-..|||||+.+++ +++|.-|...|-.||.|.+|.||.| |+||||||+|...|+|..|+++||..+|.||.|+|..
T Consensus 8 ~~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4679999998876 7999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cccCCC
Q 005337 447 YKEKGK 452 (701)
Q Consensus 447 Ak~K~k 452 (701)
|++.+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 987643
No 6
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1e-12 Score=138.67 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=74.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
...-+.|||.++ .|++.|-||+.+|.+||+|.||.|+.. -+||||||||++.++|++|-++|++..|.||+|.|..|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345678999966 789999999999999999999999985 79999999999999999999999999999999999999
Q ss_pred ccC
Q 005337 448 KEK 450 (701)
Q Consensus 448 k~K 450 (701)
..|
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 876
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=3.9e-12 Score=102.84 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 005337 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (701)
Q Consensus 376 IYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~ 443 (701)
|||+++ +.++|+++|+++|++||+|..|.|+.+ +++|||||+|.+.++|++|++.|+++.|.|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799966 568999999999999999999999884 8899999999999999999999999999999986
No 8
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4e-12 Score=132.03 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
.++|||+++ ++++||++|+++|+.||+|++|+|+.| .++|||||+|.++++|+.||. |++..|.||.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999976 678999999999999999999999998 478999999999999999996 7999999999999997644
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=3.1e-12 Score=137.99 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
....++|||+++ ++++||++|+++|++||+|++|+|++| ++||||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 457899999966 678999999999999999999999986 789999999999999999999999999999999999
Q ss_pred ecccC
Q 005337 446 PYKEK 450 (701)
Q Consensus 446 ~Ak~K 450 (701)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88754
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=4.2e-12 Score=136.97 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~G--R~L~V 444 (701)
...++|||+++ ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++||+.||++.|+| ++|+|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 45678999966 678999999999999999999999986 678999999999999999999999999977 78999
Q ss_pred EecccCCCCc
Q 005337 445 KPYKEKGKVP 454 (701)
Q Consensus 445 k~Ak~K~k~~ 454 (701)
++++++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998775543
No 11
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=130.66 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEE
Q 005337 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (701)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~l-ng~~L~GR~L~Vk 445 (701)
+..+...+||||+++.+ .++|.+|+++|.+||+|+.|+|.. .+++|||+|.+.+.|+.|.++. |...|+|++|.|+
T Consensus 222 pPeD~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 35578889999998866 899999999999999999999988 7889999999999999998765 6788999999999
Q ss_pred ecccC
Q 005337 446 PYKEK 450 (701)
Q Consensus 446 ~Ak~K 450 (701)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 98883
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.25 E-value=2.1e-11 Score=137.60 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=78.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
.....+|||+++ ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|+..||+..|+|++|+|.+
T Consensus 282 ~~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999966 568999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred cccCCCCchHHH
Q 005337 447 YKEKGKVPDKYR 458 (701)
Q Consensus 447 Ak~K~k~~~e~r 458 (701)
++.|..+....+
T Consensus 361 a~~k~~~~~~~~ 372 (562)
T TIGR01628 361 AQRKEQRRAHLQ 372 (562)
T ss_pred ccCcHHHHHHHH
Confidence 988766544433
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.9e-11 Score=139.97 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
...++|||+++ +.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 202 ~~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 34579999976 568999999999999999999999986 6899999999999999999999999999999999998
Q ss_pred cccC
Q 005337 447 YKEK 450 (701)
Q Consensus 447 Ak~K 450 (701)
+...
T Consensus 281 Ai~p 284 (612)
T TIGR01645 281 CVTP 284 (612)
T ss_pred cCCC
Confidence 8754
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=4.9e-11 Score=136.57 Aligned_cols=77 Identities=18% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
...++|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+||.|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34578999966 789999999999999999999999986 7999999999999999999999999999999999986
Q ss_pred cc
Q 005337 447 YK 448 (701)
Q Consensus 447 Ak 448 (701)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=8.2e-11 Score=121.01 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
+...+|||+++ ++++||++|+++|+.||+|++|+|++| +.+|||||+|.+++.|+.|+. |+|..|.+++|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 45589999966 789999999999999999999999998 778999999999999999995 599999999999998765
Q ss_pred C
Q 005337 450 K 450 (701)
Q Consensus 450 K 450 (701)
-
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=5.2e-11 Score=130.74 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCH--HHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~--E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
....||||++ .|+++++||+..|++||.|.+|.||+.+.||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999966 7899999999999999999999999887799999999987 789999999999999999999999886
Q ss_pred C
Q 005337 450 K 450 (701)
Q Consensus 450 K 450 (701)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1.6e-10 Score=94.99 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 005337 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (701)
Q Consensus 376 IYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~ 443 (701)
|||++++ +.+++++|+++|+.||.|..|++.++ +.+|+|||+|.+.++|++|++..+++.|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7899774 57999999999999999999999985 4689999999999999999999888999999985
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.3e-10 Score=90.30 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
+|||+++ +..+++++|+++|.+||+|..|+++.+ +++|+|||+|.+.+.|+.|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899977 557899999999999999999999875 468999999999999999999999999999999874
No 19
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=7.3e-11 Score=118.59 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
..-.+|-|-++ .+.++.++|+.+|++||.|-||.||.| ++||||||-|.+..+|+.|++.|+|..|+|+.|+|..
T Consensus 11 ~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 33456777644 689999999999999999999999998 8999999999999999999999999999999999988
Q ss_pred cccC
Q 005337 447 YKEK 450 (701)
Q Consensus 447 Ak~K 450 (701)
|+--
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 7644
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.13 E-value=2.2e-10 Score=127.96 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
.+.+++|||+++....+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|..|++.||++.|.|++|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4567899999886557999999999999999999999986 589999999999999999999999999999999998865
Q ss_pred CC
Q 005337 450 KG 451 (701)
Q Consensus 450 K~ 451 (701)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 53
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=2e-10 Score=129.74 Aligned_cols=88 Identities=16% Similarity=0.282 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARV 442 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~----GR~L 442 (701)
....++|||+++ ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|.+|++.|++..|. |+.|
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 456689999976 568999999999999999999999986 78999999999999999999999999999 9999
Q ss_pred EEEecccCCCCchHHH
Q 005337 443 LVKPYKEKGKVPDKYR 458 (701)
Q Consensus 443 ~Vk~Ak~K~k~~~e~r 458 (701)
.|.+++.+.++....+
T Consensus 254 ~v~~a~~k~er~~~~~ 269 (562)
T TIGR01628 254 YVGRAQKRAEREAELR 269 (562)
T ss_pred EeecccChhhhHHHHH
Confidence 9999988876654443
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.12 E-value=2.6e-10 Score=109.77 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
.++|||+++ ++++++++|+++|.+||+|..|+|+.| ++||||||+|.+.++|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999976 589999999999999999999999886 899999999999999999999999999999999999965
Q ss_pred c
Q 005337 449 E 449 (701)
Q Consensus 449 ~ 449 (701)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 23
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.5e-10 Score=113.93 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=72.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K~ 451 (701)
..++|||+++ ..++++.+|+..|+.||+|.+|.|-+ ...|||||+|+++.+|+.|+..|++..|||.+|+|+....+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3689999976 56899999999999999999999987 689999999999999999999999999999999999887654
Q ss_pred C
Q 005337 452 K 452 (701)
Q Consensus 452 k 452 (701)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=4.5e-11 Score=118.18 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=71.5
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
+--|||+++ +++.||.||-.+|++||+|++|.+++| +++||||+.|+++.+...|+++|||..|.||.|+|....
T Consensus 35 sA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 457999965 689999999999999999999999997 999999999999999999999999999999999997665
Q ss_pred cCC
Q 005337 449 EKG 451 (701)
Q Consensus 449 ~K~ 451 (701)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 433
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1e-10 Score=121.21 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
-+||+++ ...++-|+||+.|.+||+|.+++|++| |+||||||.|-+.++|+.||..|||+.|.+|.|+-.||..|
T Consensus 64 hvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 64 HVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 5788865 457899999999999999999999998 99999999999999999999999999999999999999887
Q ss_pred C
Q 005337 451 G 451 (701)
Q Consensus 451 ~ 451 (701)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 6
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.10 E-value=3.5e-10 Score=123.86 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
+..++|||+++ ++.++|++|+++|++||.|..|+|+++ ++||||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45799999977 468999999999999999999999975 6799999999999999999999999999999999999
Q ss_pred cccCC
Q 005337 447 YKEKG 451 (701)
Q Consensus 447 Ak~K~ 451 (701)
+....
T Consensus 263 a~~~~ 267 (457)
T TIGR01622 263 AQDST 267 (457)
T ss_pred ccCCC
Confidence 88443
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.6e-10 Score=118.35 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=77.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
...+.+.++||++++. -+||++||+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+.+|.|..|++.|-
T Consensus 159 Qssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 4568899999998866 689999999999999999999998 6799999999999999999999999999999999998
Q ss_pred ccCCCCch
Q 005337 448 KEKGKVPD 455 (701)
Q Consensus 448 k~K~k~~~ 455 (701)
++-.....
T Consensus 236 Ke~~~~~~ 243 (321)
T KOG0148|consen 236 KEGDDGIN 243 (321)
T ss_pred ccCCCCCC
Confidence 87655443
No 28
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.3e-10 Score=119.87 Aligned_cols=82 Identities=13% Similarity=0.306 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
.-.-+||||..+ .++++|..|++.|+.||+|+.|+||+| ++||||||+|++..+...|.+..++..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 356789999965 578999999999999999999999997 999999999999999999999999999999999998
Q ss_pred ecccCCC
Q 005337 446 PYKEKGK 452 (701)
Q Consensus 446 ~Ak~K~k 452 (701)
.-..+..
T Consensus 177 vERgRTv 183 (335)
T KOG0113|consen 177 VERGRTV 183 (335)
T ss_pred ecccccc
Confidence 7655543
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=4.8e-10 Score=124.22 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
...++|||+++ ++.+++++|+++|++||.|..|.|+++ +++|||||+|.+.+.|..|++.||+..|.|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999976 678999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred cccCC
Q 005337 447 YKEKG 451 (701)
Q Consensus 447 Ak~K~ 451 (701)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 86543
No 30
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.3e-10 Score=89.74 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 391 Lre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
|.++|++||+|++|.+...+ +++|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 699999999999999999999999999999999875
No 31
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.3e-10 Score=116.20 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=72.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
..+|-|+++ +-+++|++|+++|.+||.|..|.|.+| .+||||||+|...++|.+|++.|||+-++.-.|+|.|++
T Consensus 189 ~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 457999976 458999999999999999999999987 899999999999999999999999999999999999998
Q ss_pred cC
Q 005337 449 EK 450 (701)
Q Consensus 449 ~K 450 (701)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.4e-10 Score=126.15 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=75.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCe-EE--cCeEEEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDARVLV 444 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~-~L--~GR~L~V 444 (701)
...++|||+.+ ...+||.+|+++|++||.|+||+|++| .+||||||+|.+.|.|..|++.||+. .+ |..+|.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 45788999955 568999999999999999999999997 99999999999999999999999973 45 5588999
Q ss_pred EecccCCCCchHHH
Q 005337 445 KPYKEKGKVPDKYR 458 (701)
Q Consensus 445 k~Ak~K~k~~~e~r 458 (701)
++|..++.+..+..
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99988776665543
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=5.3e-10 Score=122.47 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
....++|||+++ ++++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|.+||. |++..|.|+.|.|+
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 456789999976 578999999999999999999999986 789999999999999999997 59999999999998
Q ss_pred ecccC
Q 005337 446 PYKEK 450 (701)
Q Consensus 446 ~Ak~K 450 (701)
....+
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.8e-10 Score=123.12 Aligned_cols=165 Identities=15% Similarity=0.286 Sum_probs=111.9
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
.|||+-+ .|++.|+.||..|..||+|.+|.+-.| ++|||+||+|+-+|.|+.|++.||+..+.||.|+|.+-..-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 4788844 789999999999999999999999776 99999999999999999999999999999999999844322
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccccccCchh----HHHHHHHHHHHHHH---HHHHHHhHHhh
Q 005337 451 GKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQ----DMLWRRKMEEQADL---QQALELQSRRL 523 (701)
Q Consensus 451 ~k~~~e~rkqqq~~erG~fs~~~sp~g~D~~~pfd~~~G~Rm~~n~~~----eml~RrklEEq~el---qqAiElqrRrL 523 (701)
..-..-.-.-+++... | .|+|..+.| |.-+|.-+|.=.+. +-|-.--.|..
T Consensus 194 pQAQpiID~vqeeAk~-----------------f-----nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKK-----------------F-----NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred cccchHHHHHHHHHHh-----------------h-----heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 2111100001112111 1 123322222 11112222211100 00111134678
Q ss_pred hcCCcccccccc-ccccccCCCCCCCCCCCCCCCCCCccCC
Q 005337 524 MGLQLLDVKKHH-HHRALSTGSPIPSPTHSPNIFHQNLVFP 563 (701)
Q Consensus 524 ~~lq~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (701)
.+++++++.|-+ .+.+++.++-+++.++. .+++-|+-.|
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQy-LRVGk~vTPP 291 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQY-LRVGKCVTPP 291 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccce-EecccccCCC
Confidence 889999999954 78899999999999998 7888887444
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.06 E-value=5.4e-10 Score=124.82 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHh--CCCeEEcCeEEEEEecccC
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~--lng~~L~GR~L~Vk~Ak~K 450 (701)
+|+|||+++ +++++|++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++. +++..|.|+.|+|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 789999966 67899999999999999999999997 789999999999999999986 4789999999999998754
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=1.1e-09 Score=85.98 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 383 ~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
++.+++++|+++|++||.|..|.|..+ +++|||||+|.+.++|..|++.+++..+.|+.|+|.
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 567899999999999999999999875 458999999999999999999999999999999873
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=8.3e-10 Score=126.15 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcC--CCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqF--G~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
...++|||+++ +++++|++|+++|++| |+|++|++++ +||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999966 6789999999999999 9999998864 799999999999999999999999999999999998
Q ss_pred cCCC
Q 005337 449 EKGK 452 (701)
Q Consensus 449 ~K~k 452 (701)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7654
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.02 E-value=7.3e-10 Score=126.62 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~-GR~L~Vk 445 (701)
.....+|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345589999966 568999999999999999999999987 89999999999999999999999998885 7887776
Q ss_pred eccc
Q 005337 446 PYKE 449 (701)
Q Consensus 446 ~Ak~ 449 (701)
.+.+
T Consensus 134 ~S~~ 137 (578)
T TIGR01648 134 ISVD 137 (578)
T ss_pred cccc
Confidence 6543
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.3e-09 Score=91.36 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.5
Q ss_pred HHHHHHhhh----cCCCeeEEE-Eeec------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 005337 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (701)
Q Consensus 388 EEdLre~FS----qFG~V~dVr-Ip~D------ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~V 444 (701)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|++.||+..++||.|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 688999999 999999995 5443 57999999999999999999999999999999986
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=3.2e-09 Score=84.22 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
+|||+++ ++.+++++|+++|..||+|..+.+..+ +.+|+|||+|.+.+.|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4888866 456899999999999999999999886 3589999999999999999999999999999999863
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.96 E-value=5.4e-10 Score=110.57 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=71.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
+..||||+++ +..++++-|.++|-+.|+|++|+||+| +++|||||+|.++|+|+-|++.||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4569999976 568999999999999999999999997 79999999999999999999999999999999999988
Q ss_pred cc
Q 005337 448 KE 449 (701)
Q Consensus 448 k~ 449 (701)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 73
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=2e-09 Score=119.40 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=76.2
Q ss_pred CCCc-ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 005337 370 NPAS-RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (701)
Q Consensus 370 ~~~s-RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~V 444 (701)
++.. +.||||++ .++++|++|..+|++.|.|.++++++| +.|||||++|.+.+++..|++.||+.++.||+|+|
T Consensus 14 ~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 14 SPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred CcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 3444 99999965 789999999999999999999999997 99999999999999999999999999999999999
Q ss_pred EecccCCCCc
Q 005337 445 KPYKEKGKVP 454 (701)
Q Consensus 445 k~Ak~K~k~~ 454 (701)
.++..+....
T Consensus 93 ~~~~~~~~~~ 102 (435)
T KOG0108|consen 93 NYASNRKNAE 102 (435)
T ss_pred ecccccchhH
Confidence 9987665443
No 43
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.7e-09 Score=102.14 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
.+.+.||||+++ ++-++||.|.++|+++|+|..|.|-.| ..-||+||+|-..++|+.|+.-+++..|+.|.|+|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 367889999965 788999999999999999999988776 556999999999999999999999999999999998
Q ss_pred ecc
Q 005337 446 PYK 448 (701)
Q Consensus 446 ~Ak 448 (701)
|--
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 743
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=8.3e-10 Score=117.83 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=74.6
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
...+|||+.+ +|++++|.|++||++||+|.+|.|++| ++||||||+|++++.+.++|.. ..|.|+||.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5679999966 899999999999999999999999997 9999999999999999999887 889999999999999
Q ss_pred ccCCCCc
Q 005337 448 KEKGKVP 454 (701)
Q Consensus 448 k~K~k~~ 454 (701)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9886543
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=6.2e-09 Score=95.41 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
...+|-+||.++ ++++|.|++-++|++||.|..|||-.. .-||-|||.|++..+|++|++.|++..+++|.+.|-.++
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 355788999955 789999999999999999999999765 789999999999999999999999999999999999987
Q ss_pred cCC
Q 005337 449 EKG 451 (701)
Q Consensus 449 ~K~ 451 (701)
+..
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.80 E-value=5.9e-09 Score=116.30 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=73.2
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 005337 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (701)
Q Consensus 376 IYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K~ 451 (701)
+||+++ +++++|++|+.+|+.||.|+.|.+++| ++||||||||.+.++|++|+++||+.+|-||.|+|....++-
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999965 889999999999999999999999987 899999999999999999999999999999999999888776
Q ss_pred CCch
Q 005337 452 KVPD 455 (701)
Q Consensus 452 k~~~ 455 (701)
+..+
T Consensus 360 ~~~~ 363 (549)
T KOG0147|consen 360 DTKE 363 (549)
T ss_pred cccc
Confidence 6543
No 47
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.74 E-value=2.8e-08 Score=110.37 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=66.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcC------------CCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCe
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqF------------G~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~ 435 (701)
...+..|+|||+++ ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 45678899999977 5789999999999974 4566666655 78999999999999999995 8999
Q ss_pred EEcCeEEEEEeccc
Q 005337 436 FVCDARVLVKPYKE 449 (701)
Q Consensus 436 ~L~GR~L~Vk~Ak~ 449 (701)
.|.|+.|+|.....
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999975543
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=2.3e-08 Score=109.49 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
..-+-|||+++. -++|||.|++.|++||.|+.|..++| ||||-|.+.++|.+|++.||+..|+|..|.|..|++-
T Consensus 257 s~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 455789999775 47999999999999999999999876 9999999999999999999999999999999999875
Q ss_pred CCC
Q 005337 451 GKV 453 (701)
Q Consensus 451 ~k~ 453 (701)
.+.
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 543
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.3e-08 Score=111.55 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=72.0
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
.-.|.|. +.+|.+.+.+|..+|+.||.|.+|.||+. +-+|||||+|.+..+|..|++.+|++.|+||+|-|.||.+
T Consensus 117 k~rLIIR-NLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIR-NLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEee-cCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 3456666 45799999999999999999999999973 6779999999999999999999999999999999999998
Q ss_pred CCCCc
Q 005337 450 KGKVP 454 (701)
Q Consensus 450 K~k~~ 454 (701)
|..-.
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 86543
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=4.4e-08 Score=101.61 Aligned_cols=82 Identities=12% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
+.+.+++.|.+++ -.+|+|+||.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+||..|..+.|+|.
T Consensus 38 ~~skTNLIvNYLP-Q~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLP-QNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred Ccccceeeeeecc-cccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 4566677777664 58999999999999999999999998 888999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005337 446 PYKEKGK 452 (701)
Q Consensus 446 ~Ak~K~k 452 (701)
+|.+...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9988653
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=1.6e-08 Score=108.10 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=75.1
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
..++|||+.+ +..++|+++++||.+||.|.++.|++| ++||||||+|.+.+.+++++.. .-|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 5679999966 568999999999999999999999997 9999999999999999999988 899999999999999
Q ss_pred ccCCCCch
Q 005337 448 KEKGKVPD 455 (701)
Q Consensus 448 k~K~k~~~ 455 (701)
.+|.....
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 99876543
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=4.4e-08 Score=107.38 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEE-cCeEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVLV 444 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L-~GR~L~V 444 (701)
.+.-..|||+.+ ..++.|++|.-+|++.|+|-++|||.| .+||||||||.+.+.|++|++.+|+++| .|+.|.|
T Consensus 80 p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 366679999977 458999999999999999999999997 9999999999999999999999999988 7888888
Q ss_pred Eeccc
Q 005337 445 KPYKE 449 (701)
Q Consensus 445 k~Ak~ 449 (701)
.....
T Consensus 159 c~Sva 163 (506)
T KOG0117|consen 159 CVSVA 163 (506)
T ss_pred EEeee
Confidence 66553
No 53
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=5.7e-08 Score=111.81 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
.....-+|||+|+.+ +.+++|.||+.+|+.||+|++|.++- .||+|||+.....+|.+|+.+|+.+.+.++.|+|.|
T Consensus 415 d~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred cceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 355678899999977 56899999999999999999999988 999999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 005337 447 YKEKGKVP 454 (701)
Q Consensus 447 Ak~K~k~~ 454 (701)
+..++-+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99988766
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=6.8e-08 Score=105.55 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=71.0
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCC
Q 005337 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (701)
Q Consensus 376 IYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K~k~ 453 (701)
|||.++ +..++..+|.+.|+.||+|++|+|++| -+||| ||.|+++++|++|++.||+..+.|+.|.|..+..+.++
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999966 557999999999999999999999987 79999 99999999999999999999999999999998877654
Q ss_pred c
Q 005337 454 P 454 (701)
Q Consensus 454 ~ 454 (701)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 4
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4.9e-08 Score=97.23 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
...+++|||++++ .++.|.+|+++|.+||.|.+|.+..- ..-.||||+|+++.+|+.||..-++..++|-+|+|..+.
T Consensus 3 gr~~~~iyvGNLP-~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 3 GRNSRRIYVGNLP-GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred CcccceEEecCCC-cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3567899999764 58999999999999999999998542 456899999999999999999999999999999999876
Q ss_pred cC
Q 005337 449 EK 450 (701)
Q Consensus 449 ~K 450 (701)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=1.1e-07 Score=98.72 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
---|||-++ ..+.+|..|+++|++||-|..|+|++| +.||||||++.+.++|..|+..|||..+.+|.+.|....
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 446888755 557899999999999999999999998 999999999999999999999999999999999998755
Q ss_pred cC
Q 005337 449 EK 450 (701)
Q Consensus 449 ~K 450 (701)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=2.8e-08 Score=106.57 Aligned_cols=127 Identities=15% Similarity=0.187 Sum_probs=94.7
Q ss_pred hhhhhhhhhhhhHHHHHHHH-HHHHhhhhhhccccCc-ccc-cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhh
Q 005337 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSR-LER-NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYF 395 (701)
Q Consensus 319 k~~~fLLQ~~~~esQR~~~~-~a~ml~ed~~kfg~~R-~eR-sDf~~~g~~gs~~~~sRtIYV~~~~~~~~TEEdLre~F 395 (701)
|.|.|+--+-.+.+|.+-.+ ++.|||.+..|.|+.- ... ....+| +--..+....|||.-. +.+.+|+||+..|
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~--vqeeAk~fnRiYVaSv-HpDLSe~DiKSVF 231 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM--VQEEAKKFNRIYVASV-HPDLSETDIKSVF 231 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHH--HHHHHHhhheEEeeec-CCCccHHHHHHHH
Confidence 55555444335566666655 5779999988888421 000 000011 1112356678999854 5589999999999
Q ss_pred hcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 396 SIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 396 SqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
+.||+|+.|.+.++ .+|||||++|.+......|+..||-..|.|.-++|....
T Consensus 232 EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 232 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999875 899999999999999999999999999999999997664
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=5.2e-08 Score=108.84 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
.||||..+ .++++.++|.++|+.+|+|..|.++.+ .+||||||||.-.|+++.|++..+...+.||.|.|.+++.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999966 578999999999999999999999985 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 005337 450 KGKV 453 (701)
Q Consensus 450 K~k~ 453 (701)
|...
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 7543
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=4.5e-08 Score=93.41 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=74.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 005337 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (701)
Q Consensus 366 ~gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~ 441 (701)
++.-...-=.|||+.+ +...||++|.+.|..||+|..|.+-.| -.|||+.|+|++.++|++|++.||+..|-|..
T Consensus 65 gPqrSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCccceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 3344444557999976 457999999999999999999999776 67899999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 005337 442 VLVKPYKEKGK 452 (701)
Q Consensus 442 L~Vk~Ak~K~k 452 (701)
|.|.|+--+..
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999876554
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=9e-08 Score=104.65 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCe-EEcC--eE
Q 005337 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH-FVCD--AR 441 (701)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~-~L~G--R~ 441 (701)
.+...-++||+.+ .-..+|+|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..++.. .|-| .+
T Consensus 30 ~d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456678999965 457899999999999999999999998 88999999999999999999998654 4444 67
Q ss_pred EEEEecccCCCCc
Q 005337 442 VLVKPYKEKGKVP 454 (701)
Q Consensus 442 L~Vk~Ak~K~k~~ 454 (701)
|.|++|...+++.
T Consensus 109 vqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 109 VQVKYADGERERI 121 (510)
T ss_pred eeecccchhhhcc
Confidence 8999998666653
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=1.5e-07 Score=95.94 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHH----hhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre----~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
..+.||||.++.+ .+..++|++ +|++||.|.+|...+- +.||-|||.|.+.+.|-.|+..|+|..+.|+.+++.
T Consensus 7 ~pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3344999998766 688888888 9999999999988754 899999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 005337 446 PYKEKGKVP 454 (701)
Q Consensus 446 ~Ak~K~k~~ 454 (701)
+|+.+....
T Consensus 86 yA~s~sdii 94 (221)
T KOG4206|consen 86 YAKSDSDII 94 (221)
T ss_pred cccCccchh
Confidence 999886654
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.43 E-value=4.8e-07 Score=99.11 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FS-qFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~ 443 (701)
......|.+||+++ .|++.=.+|+++|. +.|+|+.|.+..| |+||+|.|+|+++|.+++|++.||.+.++||+|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 33455677999966 67888899999995 6899999999987 9999999999999999999999999999999999
Q ss_pred EEec
Q 005337 444 VKPY 447 (701)
Q Consensus 444 Vk~A 447 (701)
||.-
T Consensus 118 vKEd 121 (608)
T KOG4212|consen 118 VKED 121 (608)
T ss_pred Eecc
Confidence 9854
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=4.7e-07 Score=95.30 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K~k~ 453 (701)
++||++++ -++++.+|+.+|.+||+|.+|.|++ .||||-.++...++.|+.+|++-.|+|..|.|+.++.|.+.
T Consensus 4 KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 4 KLFIGNLP-REATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred chhccCCC-cccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 68899764 5899999999999999999999987 79999999999999999999999999999999999888543
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.7e-07 Score=96.04 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
.|.-+-|||--+.+ -+|+|||+-+|+.||+|.+|.|++| .+--||||+|++.+++++|.-+|+...|+.|+|.|.
T Consensus 236 ~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46667788864433 4688999999999999999999998 455699999999999999999999999999999998
Q ss_pred ecccC
Q 005337 446 PYKEK 450 (701)
Q Consensus 446 ~Ak~K 450 (701)
..+.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 76643
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.34 E-value=5e-07 Score=89.94 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEE-EEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dV-rIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
...-+|||+++.. .++|..|.+.|+.||.+.+. .|++| +++|||||.|.+.|.+.+|++.||++.++.|+|.|.
T Consensus 94 ~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 4447899997755 99999999999999998774 55554 899999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 005337 446 PYKEKGKVP 454 (701)
Q Consensus 446 ~Ak~K~k~~ 454 (701)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 988765543
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.32 E-value=6.5e-07 Score=94.26 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
+.+..+++|.|+++ ..+++..+||+.|.+||+|.+|.|++ +|+||.|+-.++|..|+..|++.+++|++++|...
T Consensus 73 sKsk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 73 SKSKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred ccCCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 33568899999976 56899999999999999999999987 79999999999999999999999999999999988
Q ss_pred ccCCCC
Q 005337 448 KEKGKV 453 (701)
Q Consensus 448 k~K~k~ 453 (701)
..|-..
T Consensus 148 tsrlrt 153 (346)
T KOG0109|consen 148 TSRLRT 153 (346)
T ss_pred cccccc
Confidence 776443
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.2e-06 Score=95.90 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.1
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K~ 451 (701)
.+||| .++||.+|.+.|+.+|+|++|+|.+| -+-|||||.|.++++|++|++.||...|.|++|++-|.....
T Consensus 3 sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 67999999999999999999999887 588999999999999999999999999999999999987664
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=1.9e-06 Score=98.89 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-------ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
+|||.+. .|++|.++|..+|.+.|.|.+|+|..- .+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3999965 789999999999999999999999762 23499999999999999999999999999999999988
Q ss_pred c
Q 005337 448 K 448 (701)
Q Consensus 448 k 448 (701)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.8e-06 Score=88.78 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=67.6
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCC-eEEcC--eEEEEE
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP-HFVCD--ARVLVK 445 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng-~~L~G--R~L~Vk 445 (701)
..|++||+-+ ...-.||||+.+|..||+|++|.|.++ .+||++||.|.+.-+|..||..|++ ..+-| ..+.||
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4578888854 446789999999999999999999884 8999999999999999999999886 34544 458889
Q ss_pred ecccCCCCc
Q 005337 446 PYKEKGKVP 454 (701)
Q Consensus 446 ~Ak~K~k~~ 454 (701)
.+...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 887655543
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=1.5e-06 Score=99.76 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
-++|.|.++ .+..+-.+|+++|+.||.|.+||||.- -+||||||+|.++.+|.+|++.|..+-|.||++.+.|++
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 468999966 688999999999999999999999972 679999999999999999999999999999999999998
Q ss_pred cCCC
Q 005337 449 EKGK 452 (701)
Q Consensus 449 ~K~k 452 (701)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7765
No 71
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=1.7e-06 Score=88.27 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 005337 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (701)
Q Consensus 366 ~gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L 442 (701)
+.++.+..|||||.+. ...++||-|.++|-+-|+|..|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+
T Consensus 2 gaaaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 2 GAAAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred CCCCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 3466788899999965 568999999999999999999999875 555 99999999999999999999999999999
Q ss_pred EEEecccCCC
Q 005337 443 LVKPYKEKGK 452 (701)
Q Consensus 443 ~Vk~Ak~K~k 452 (701)
.|++-....-
T Consensus 80 q~~~r~G~sh 89 (267)
T KOG4454|consen 80 QRTLRCGNSH 89 (267)
T ss_pred hcccccCCCc
Confidence 9988765533
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=4e-06 Score=94.30 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=69.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
-.|+++|..+ +..+...||+++|++||+|+-..|++. --|.|||||+.+.++|.++|+.|+.+.|.||.|-|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4579999876 456778999999999999999999985 56889999999999999999999999999999999887
Q ss_pred cc
Q 005337 448 KE 449 (701)
Q Consensus 448 k~ 449 (701)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=3.5e-06 Score=88.05 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=69.2
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
.--+|||-.+ .-++.+.+|..+|-.||.|++.+|--| ++|.||||.|+++.+++.||..|||..|.=++++|...
T Consensus 284 eGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 284 EGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3346777644 346899999999999999999999776 89999999999999999999999999999999999887
Q ss_pred ccCCC
Q 005337 448 KEKGK 452 (701)
Q Consensus 448 k~K~k 452 (701)
++|..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 76654
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=81.40 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=66.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcC-CCeeEEEEee----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqF-G~V~dVrIp~----DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
...-+||..++ .-+.|..+..||.+| |.|..+|+-+ +.+||||||+|++.|.|+-|-+.||+.-|.|+.|.|..
T Consensus 48 ~~g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 34456777553 467899999999999 7888888865 49999999999999999999999999999999999987
Q ss_pred cccC
Q 005337 447 YKEK 450 (701)
Q Consensus 447 Ak~K 450 (701)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6655
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.96 E-value=1.5e-05 Score=88.64 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~----DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
.+|||+++ ..++++.+|++.|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+.-+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 44999966 56899999999999999999999965 35559999999999999999999 89999999999986544
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=1.6e-05 Score=81.38 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=64.3
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
.+||+.+ .+.+.+++|+.+|..||.|.+|.+.. |||||.|.+..+|..|+..+|+.+|+|-++.|.++..+
T Consensus 3 rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRL-PYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeeccc-CCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899955 67899999999999999999999855 99999999999999999999999999999888887753
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=4.6e-05 Score=87.89 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=73.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee-------cCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~-------DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR 440 (701)
..++..+++||+++.+ .++|+.|-..|+.||+|..|+|+. ++-|-+|||.|-+..+|++|++.|++..+.++
T Consensus 169 dgDP~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3478999999997754 799999999999999999999986 27889999999999999999999999999999
Q ss_pred EEEEEeccc
Q 005337 441 RVLVKPYKE 449 (701)
Q Consensus 441 ~L~Vk~Ak~ 449 (701)
.++..|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999998853
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.74 E-value=2.3e-05 Score=81.59 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=70.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
-.||.+-+ .-+++++-|...|.+|=.-...++++| +++|||||.|.++.++..|+..|||..++.|.|+......
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 46777622 335899999999999999999999987 9999999999999999999999999999999999876665
Q ss_pred CCCCchHHH
Q 005337 450 KGKVPDKYR 458 (701)
Q Consensus 450 K~k~~~e~r 458 (701)
|....+..+
T Consensus 270 keRn~dvv~ 278 (290)
T KOG0226|consen 270 KERNLDVVK 278 (290)
T ss_pred HhhhhHHHh
Confidence 554444333
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.70 E-value=0.00011 Score=76.69 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~V 444 (701)
.......+|||.++ ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|..|++.+++.-++|+++.+
T Consensus 78 ~~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 34566689999966 789999999999999999999999887 88899999999999999999999999999999988
Q ss_pred Eecc
Q 005337 445 KPYK 448 (701)
Q Consensus 445 k~Ak 448 (701)
....
T Consensus 157 ~~i~ 160 (243)
T KOG0533|consen 157 EIIS 160 (243)
T ss_pred EEec
Confidence 6554
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.69 E-value=6.8e-05 Score=82.77 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
.+.+...||+|+++ ++++|=..|++-|.+||.|..+.|+.. ++|| .|.|.++++|+.|+..|++..|+||.|.|.+
T Consensus 531 gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 531 GAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 44577788999965 689999999999999999999999763 7886 9999999999999999999999999999975
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.69 E-value=5e-05 Score=78.58 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
...+.+||+++ ++.+|-+.+..+|.-||.|..|.|++| ++|||+||+|.+.+.+..|+. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999965 677777779999999999999999987 679999999999999999999 799999999999987
Q ss_pred cccC
Q 005337 447 YKEK 450 (701)
Q Consensus 447 Ak~K 450 (701)
..-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6654
No 82
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.50 E-value=0.0002 Score=79.78 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 367 gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
|.+....+.+=+.-.+----+-++|..+|.+||+|+.|.|-+ +-=-|.|||.+..+|-.|... .+..|+||.|+|.|
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFW 442 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEE
Confidence 455566666655533222335689999999999999999966 333589999999999888776 89999999999999
Q ss_pred cccCC
Q 005337 447 YKEKG 451 (701)
Q Consensus 447 Ak~K~ 451 (701)
..+-.
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87743
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.42 E-value=6.1e-05 Score=84.96 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
.||+|+-.++ -..++.+|.++|+.+|+|.+|+|+.| ++||.|||+|.+.+.+..|+.. .|+.+.|.+|.|+..+
T Consensus 179 ~Rtvf~~qla-~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLA-RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHh-hcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 3566665443 57889999999999999999999997 8999999999999999999965 9999999999998765
Q ss_pred c
Q 005337 449 E 449 (701)
Q Consensus 449 ~ 449 (701)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 4
No 84
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.28 E-value=6.6e-05 Score=53.11 Aligned_cols=24 Identities=46% Similarity=1.066 Sum_probs=18.2
Q ss_pred CCcccccccc-cccCCCCCCcccCC
Q 005337 230 GWRPCLYFAR-GYCKNGSSCRFVHG 253 (701)
Q Consensus 230 g~kPC~YFar-G~CK~GssCrF~Hg 253 (701)
.-++|.+|.+ |.|++|.+|+|.|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 3579988777 99999999999996
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.0002 Score=81.09 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~ 443 (701)
-.+...++|+|.++ +.++++++|+..|+.||+|..|+.-. .++|..||+|=|..+|++|++.+++..|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34677899999865 56899999999999999999988744 3899999999999999999999999999999998
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.10 E-value=0.0014 Score=72.23 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
+..|-|.++.+..+|.+.|..+|+-||+|.+|.|.+. ++--|.|.|.+...|+.|++.|+|+.|.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6778888888999999999999999999999999985 447899999999999999999999999999999987763
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.87 E-value=0.0025 Score=69.18 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeE--------EEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~d--------VrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~ 438 (701)
...++.|||.+++ .++|-+++.++|++||-|.. |.+-++ +-||=|.++|-..|+|..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 4556679999775 47999999999999998864 334443 88999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 005337 439 DARVLVKPYK 448 (701)
Q Consensus 439 GR~L~Vk~Ak 448 (701)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998875
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.84 E-value=0.0029 Score=71.16 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHhhhcCCCeeEEEEeec--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 381 PADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 381 ~~~~~~TEEdLre~FSqFG~V~dVrIp~D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
-+.|++|++||.++|+.+ .|+++.+++. |..|=|||+|.+.|++++|+++ +...+..|-|.|..+..+
T Consensus 17 GLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 17 GLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 357999999999999999 6888888875 8999999999999999999999 999999999999877544
No 89
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.81 E-value=0.00065 Score=46.86 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005337 232 RPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (701)
.+|.+|.+|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999995
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.69 E-value=0.0058 Score=63.28 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee-c----CCCceEEEEECCHHHHHHHHHhCCCeEE---cCeEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDARV 442 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~-D----ksRGFGFVTF~~~E~A~~ALe~lng~~L---~GR~L 442 (701)
.+-||+||..++ -++...+|..+|..|---+.+.|-+ + -.+-+|||||.+...|.+|+..|||..+ ++..+
T Consensus 32 ~~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 346999998764 4788999999999997777776644 2 2347999999999999999999999998 57889
Q ss_pred EEEecccCCCC
Q 005337 443 LVKPYKEKGKV 453 (701)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (701)
++..|+...|+
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99998876554
No 91
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.67 E-value=0.0038 Score=50.74 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=41.2
Q ss_pred ceEEEc-CCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHH
Q 005337 374 RQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (701)
Q Consensus 374 RtIYV~-~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~AL 429 (701)
+.|-|. ++.+ ..+.|..+|.+||+|+++++.. .+-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~---~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD---LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch---HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 456665 3322 3577889999999999999984 6679999999999999985
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.53 E-value=0.0015 Score=69.76 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
-.+.+||.....++.+++++|..+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+++..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345677733355889999999999999999999999875 8999999999999999999987 88999999999998
Q ss_pred cccCCCC
Q 005337 447 YKEKGKV 453 (701)
Q Consensus 447 Ak~K~k~ 453 (701)
..++.+.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 7776553
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.46 E-value=0.013 Score=66.08 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHhhhhhh-ccccCcccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeE-EEE
Q 005337 329 QNDTQRAAAAAALMLNEDMH-KFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI 406 (701)
Q Consensus 329 ~~esQR~~~~~a~ml~ed~~-kfg~~R~eRsDf~~~g~~gs~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~d-VrI 406 (701)
..+.+.+-+.+..+|+.... +|-. -.+-.|+.---.++......-.|-+.. +.|.+||+||.++|+--=.|.+ |-+
T Consensus 59 eedv~~AlkkdR~~mg~RYIEVf~~-~~~e~d~~~~~~g~~s~~~d~vVRLRG-LPfscte~dI~~FFaGL~Iv~~gi~l 136 (510)
T KOG4211|consen 59 EEDVEKALKKDRESMGHRYIEVFTA-GGAEADWVMRPGGPNSSANDGVVRLRG-LPFSCTEEDIVEFFAGLEIVPDGILL 136 (510)
T ss_pred hHHHHHHHHhhHHHhCCceEEEEcc-CCccccccccCCCCCCCCCCceEEecC-CCccCcHHHHHHHhcCCcccccceee
Confidence 34555555555667776633 3411 112223222111222223334444554 4799999999999998755555 334
Q ss_pred eec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 407 PYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 407 p~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
+.| ++-|=|||.|+++|.|++||.. +...|..|-|.|..+.
T Consensus 137 ~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 137 PMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred eccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 444 8889999999999999999999 8899999999997653
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.0063 Score=65.98 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=61.9
Q ss_pred CCCcceEEEcCCCCCCCCHH---HH--HHhhhcCCCeeEEEEeec-----CCCc-e-EEEEECCHHHHHHHHHhCCCeEE
Q 005337 370 NPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHFV 437 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEE---dL--re~FSqFG~V~dVrIp~D-----ksRG-F-GFVTF~~~E~A~~ALe~lng~~L 437 (701)
.....-+||..+..--..|| -| .+||++||.|..|.|-+. ---+ + -||||...|+|.+++.+.++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 45667789987765545555 33 389999999999988552 1112 2 39999999999999999999999
Q ss_pred cCeEEEEEecccC
Q 005337 438 CDARVLVKPYKEK 450 (701)
Q Consensus 438 ~GR~L~Vk~Ak~K 450 (701)
+||.|+..+...|
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999998765543
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.0021 Score=66.14 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
..|.|. ++...+...+|.++|++||++..+.+ .++++||.|+..++++.|++.+++..+.|+.|.|.
T Consensus 100 ~r~~~~-~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 100 FRLIVR-NLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ceeeec-cchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 345555 33446778999999999999966655 56999999999999999999999999999999993
No 96
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.24 E-value=0.021 Score=52.20 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=59.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhc--CCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEE
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARV 442 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSq--FG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~----GR~L 442 (701)
.+||-|++++ -..|.++|.+++.+ .|...=+.+|.| ...|||||.|.+++.|..-.+.++++... .+.+
T Consensus 1 RTTvMirNIP-n~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 1 RTTVMIRNIP-NKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred CeeEEEecCC-CCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 3688888764 47898888888765 477777888887 67899999999999999999998887764 4556
Q ss_pred EEEecc
Q 005337 443 LVKPYK 448 (701)
Q Consensus 443 ~Vk~Ak 448 (701)
.|.+|.
T Consensus 80 ~i~yAr 85 (97)
T PF04059_consen 80 EISYAR 85 (97)
T ss_pred EEehhH
Confidence 666654
No 97
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.20 E-value=0.019 Score=52.75 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=48.5
Q ss_pred cCCCCCCCCHHHHHHhhhcCCCeeEEE-------------EeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE-E
Q 005337 379 TFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL-V 444 (701)
Q Consensus 379 ~~~~~~~~TEEdLre~FSqFG~V~dVr-------------Ip~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~-V 444 (701)
||+.. ....|-++|++||+|.+.. ++. ...+--|+|+++.+|.+||.+ ||..|.|..+. |
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 56643 5678889999999999885 343 678999999999999999999 99999986554 6
Q ss_pred Eecc
Q 005337 445 KPYK 448 (701)
Q Consensus 445 k~Ak 448 (701)
++.+
T Consensus 87 ~~~~ 90 (100)
T PF05172_consen 87 KPCD 90 (100)
T ss_dssp EE-H
T ss_pred EEcH
Confidence 6653
No 98
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.19 E-value=0.0022 Score=70.76 Aligned_cols=25 Identities=44% Similarity=1.124 Sum_probs=23.7
Q ss_pred CCcccccccccccCCCCCCcccCCC
Q 005337 230 GWRPCLYFARGYCKNGSSCRFVHGG 254 (701)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg~ 254 (701)
..|||.||-.|-|+.|.+|||.||.
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 4899999999999999999999995
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.97 E-value=0.013 Score=52.58 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=46.3
Q ss_pred ceEEEcCCCCCCCCH----HHHHHhhhcCC-CeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 374 RQIYLTFPADSTFRE----EDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 374 RtIYV~~~~~~~~TE----EdLre~FSqFG-~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
..+||.+++. +.+. ..|+.++.-+| .|.+| ..+-|+|.|.+++.|.+|.+.|++..+.|++|.|....
T Consensus 3 s~L~V~NLP~-~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPT-NKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--T-TS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCC-CCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4578887654 3444 44556666775 88887 56899999999999999999999999999999999875
Q ss_pred cCCC
Q 005337 449 EKGK 452 (701)
Q Consensus 449 ~K~k 452 (701)
..+.
T Consensus 76 ~~r~ 79 (90)
T PF11608_consen 76 KNRE 79 (90)
T ss_dssp -S--
T ss_pred Cccc
Confidence 4443
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.96 E-value=0.029 Score=61.24 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCCCCCcceEEEcCC---CCCCCC-------HHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeE
Q 005337 367 GIVNPASRQIYLTFP---ADSTFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (701)
Q Consensus 367 gs~~~~sRtIYV~~~---~~~~~T-------EEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~ 436 (701)
++-.+..+||.+.+. .++..+ +++|++-=++||.|..|.|---...|-+-|+|.+.++|..+|+.|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 345567788888743 223344 4566666789999999966432678999999999999999999999999
Q ss_pred EcCeEEEEEecccCC
Q 005337 437 VCDARVLVKPYKEKG 451 (701)
Q Consensus 437 L~GR~L~Vk~Ak~K~ 451 (701)
++||.|....+..+.
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999988776553
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.023 Score=64.86 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=53.1
Q ss_pred HHHHHhhhcCCCeeEEEEeec-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 389 EdLre~FSqFG~V~dVrIp~D-------ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
|+|+.-+++||.|.+|.|+++ -.-|--||+|.+.+++++|++.|+|..+.||.|...++.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566666889999999999874 3446679999999999999999999999999999988754
No 102
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.67 E-value=0.01 Score=51.50 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005337 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (701)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (701)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999998 46678888887775 5667777777543
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.50 E-value=0.077 Score=58.56 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~K 450 (701)
..--+.|-.+...+++-+.|-++|..||.|++|..|+ .+-|-|.|++.+...+++|+..||+..+.|.+|.|...+..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 3445556567777889999999999999999999998 36789999999999999999999999999999999987643
No 104
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.33 E-value=0.0092 Score=39.30 Aligned_cols=18 Identities=44% Similarity=1.174 Sum_probs=16.6
Q ss_pred ccccccccccCCCCCCcccC
Q 005337 233 PCLYFARGYCKNGSSCRFVH 252 (701)
Q Consensus 233 PC~YFarG~CK~GssCrF~H 252 (701)
||+||.. |++|.+|.|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 6998877 99999999999
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.06 E-value=0.026 Score=61.71 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeE--------EEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~d--------VrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L 437 (701)
...+-+|||-.+.+ .+++.+|.++|.++|.|.. |.|-+| +.||=|-|+|+++-.|+.|+...++..+
T Consensus 63 ~s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 66778999987755 6899999999999998853 233333 8899999999999999999999999999
Q ss_pred cCeEEEEEecccCCCC
Q 005337 438 CDARVLVKPYKEKGKV 453 (701)
Q Consensus 438 ~GR~L~Vk~Ak~K~k~ 453 (701)
+|..|+|..+..+..+
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999988877654
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.025 Score=64.83 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEec
Q 005337 389 EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPY 447 (701)
Q Consensus 389 EdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~-GR~L~Vk~A 447 (701)
.-|.++|+++|+|+.+.+|-+ ..+||.|++|.+...|+.|++.+||+.|+ ..+..|...
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 456688999999999999975 89999999999999999999999998875 455555443
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.75 E-value=0.1 Score=51.19 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCCcceEEEcCCC-----CCCCCH---HHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 005337 370 NPASRQIYLTFPA-----DSTFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (701)
Q Consensus 370 ~~~sRtIYV~~~~-----~~~~TE---EdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~ 441 (701)
.|..-||.|.-.. ...+.+ .+|-+.|.+||+|.=||++- +-=+|||.+-+.|-+|+.. ++..|+|+.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~ 98 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRT 98 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEE
Confidence 3667788886322 113443 35667899999999999987 5689999999999999997 999999999
Q ss_pred EEEEeccc
Q 005337 442 VLVKPYKE 449 (701)
Q Consensus 442 L~Vk~Ak~ 449 (701)
|.|+.-.+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99986443
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.73 E-value=0.024 Score=64.75 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
-.-..|||+++. ..+++..+++....||++...+++.| .++||+|.+|.++.....|++.+||..+.++++.|..
T Consensus 287 ~~~~ki~v~~lp-~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLP-LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCc-CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 445689999774 46899999999999999999999886 7999999999999999999999999999999999998
Q ss_pred cccCCC
Q 005337 447 YKEKGK 452 (701)
Q Consensus 447 Ak~K~k 452 (701)
|..-..
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 865443
No 109
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=94.66 E-value=0.022 Score=48.59 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=37.2
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005337 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (701)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (701)
.-+|.+|++++|+.|.||-|+||= .+..|++.|=-.| .+|..-|..|-.-
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~v 60 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEV 60 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 357999999999999999999985 5557888875544 4555556555443
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.42 E-value=0.05 Score=63.73 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeE-EEE---eecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~d-VrI---p~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
.+..-|||..+ ...+++.++-++|..--.|++ |.| ++++-++-|||.|..++.+..|+..-..+++..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45568999865 467889999999999888888 665 4469999999999998888888877788999999999987
Q ss_pred cccCCC
Q 005337 447 YKEKGK 452 (701)
Q Consensus 447 Ak~K~k 452 (701)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 766544
No 111
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=94.24 E-value=0.022 Score=61.01 Aligned_cols=28 Identities=43% Similarity=0.931 Sum_probs=25.3
Q ss_pred CCCCCcccccccc-cccCCCCCCcccCCC
Q 005337 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGG 254 (701)
Q Consensus 227 ~~~g~kPC~YFar-G~CK~GssCrF~Hg~ 254 (701)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4678899999999 999999999999984
No 112
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.17 E-value=0.11 Score=47.93 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=34.5
Q ss_pred EEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCC
Q 005337 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (701)
Q Consensus 376 IYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~ln 433 (701)
|.+... ...++.++|++.|++||+|..|.+.. .---|||-|.+++.|+.|++.+.
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 344433 34677999999999999999998877 44579999999999999998753
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.89 E-value=0.14 Score=58.47 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee-------cCCCc---eEEEEECCHHHHHHHHHhCCCeEEcC
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRM---FGFVTFVYPETVKIILAKGNPHFVCD 439 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~-------DksRG---FGFVTF~~~E~A~~ALe~lng~~L~G 439 (701)
..-+++|||+++ +|+++|+.|...|..||.|. |..+. --.+| |.|+.|+++..+...+.. ...+.
T Consensus 256 ~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEGE 330 (520)
T ss_pred cccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhcc
Confidence 466899999977 68999999999999999964 45552 15667 999999999999888766 33366
Q ss_pred eEEEEEecccCCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 005337 440 ARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSR 481 (701)
Q Consensus 440 R~L~Vk~Ak~K~k~~~e~rkqqq~~erG~fs~~~sp~g~D~~ 481 (701)
.....+...++-+..+ .+.++|.+-..+|... ....+|.+
T Consensus 331 ~~~yf~vss~~~k~k~-VQIrPW~laDs~fv~d-~sq~lDpr 370 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE-VQIRPWVLADSDFVLD-HNQPIDPR 370 (520)
T ss_pred cceEEEEecCcccccc-eeEEeeEeccchhhhc-cCcccCcc
Confidence 6666655544433322 1223455444444432 23334444
No 114
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.88 E-value=0.19 Score=52.16 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~-GR~L~Vk~Ak 448 (701)
.+.+..++++++++ .++.+.+..+|.+|.--.+||++.. .++.+||+|.+...+..|...+.+..|- ...+.|..++
T Consensus 143 ~ppn~ilf~~niP~-es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPS-ESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCc-chhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 57788899997754 6889999999999999999998763 5789999999999999999988877765 6677776653
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.48 E-value=0.044 Score=61.18 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=52.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee------c-----------CCCceEEEEECCHHHHHHHHHhCC
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~------D-----------ksRGFGFVTF~~~E~A~~ALe~ln 433 (701)
-.+|+|.+.+++.. -.-|.|.++|+.+|.|..|||.. | ..+-+|+|+|+..+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~D-h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLD-HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcc-hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 47899999977554 34489999999999999999965 1 236789999999999999999976
Q ss_pred C
Q 005337 434 P 434 (701)
Q Consensus 434 g 434 (701)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 116
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.78 E-value=0.045 Score=57.67 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHhhh-cCCCeeEEEEee---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 389 EDVSNYFS-IYGPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 389 EdLre~FS-qFG~V~dVrIp~---DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
|+|...|+ +||+|+++.|.. +.-+|=.+|.|...|+|++|++.||+..+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55555555 999999997765 377899999999999999999999999999999998764
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.70 E-value=0.32 Score=55.61 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=67.3
Q ss_pred cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeeEEEEeec----CCCceEEEEECCHHHHHHHHHhC
Q 005337 358 NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG 432 (701)
Q Consensus 358 sDf~~~g~~gs~~~~sRtIYV~~~~~~~~TEEdLre~FS-qFG~V~dVrIp~D----ksRGFGFVTF~~~E~A~~ALe~l 432 (701)
+||... +.......||||||.++ --++.++|..+|. -||-|.-|-|=.| ..||-|=|||.+...-.+||++
T Consensus 357 s~fv~d--~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa- 432 (520)
T KOG0129|consen 357 SDFVLD--HNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA- 432 (520)
T ss_pred chhhhc--cCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-
Confidence 345544 23445678999999774 4689999999999 7999999999776 6789999999999999999987
Q ss_pred CCeEE----cCeEEEEEecc
Q 005337 433 NPHFV----CDARVLVKPYK 448 (701)
Q Consensus 433 ng~~L----~GR~L~Vk~Ak 448 (701)
.-..| -.++|.||+|.
T Consensus 433 rFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 433 RFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred heEEEeccccceeeeeccee
Confidence 32222 23577777776
No 118
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=91.32 E-value=0.21 Score=52.13 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=51.1
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 005337 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L 437 (701)
+..++-.|+||.++ ..+++|++|+.+|+.|--...++|-....--.+||.|++.+.|..|+..|.|..|
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44566679999865 5689999999999999877766664322334688888888888888877665443
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.91 E-value=0.5 Score=51.07 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHhhhcCCCeeEEEEeec-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 005337 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (701)
Q Consensus 388 EEdLre~FSqFG~V~dVrIp~D-----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak~ 449 (701)
|+++.+--++||.|..|.|-.+ .-----||+|...++|.+|+-.|||.++.||.|...++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4667777889999999977442 1112379999999999999999999999999999887753
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.84 E-value=1.1 Score=49.82 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=63.2
Q ss_pred CcceEEEc-CCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEecc
Q 005337 372 ASRQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYK 448 (701)
Q Consensus 372 ~sRtIYV~-~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~G--R~L~Vk~Ak 448 (701)
.+.-|.++ .++-+.+|.+-|..+-...|+|.+|.|.+ |.---|.|+|++.+.|++|.+.|||..|.- =.|+|.+|+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 34445555 56678999999999999999999999987 344469999999999999999999988844 356677777
Q ss_pred cCC
Q 005337 449 EKG 451 (701)
Q Consensus 449 ~K~ 451 (701)
+.+
T Consensus 198 P~r 200 (494)
T KOG1456|consen 198 PTR 200 (494)
T ss_pred cce
Confidence 643
No 121
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=90.11 E-value=0.17 Score=53.62 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=55.9
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCeE
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-------FGFVTFVYPETVKIILAKGNPHF 436 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~-D--------ksRG-------FGFVTF~~~E~A~~ALe~lng~~ 436 (701)
.--||+..++. .++..-||++|++||.|-.|.+-. + +.+| =|+|+|.+...|+.+.+.||+..
T Consensus 74 ~GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35799997755 589999999999999999999854 2 1111 28999999999999999999999
Q ss_pred EcCeE
Q 005337 437 VCDAR 441 (701)
Q Consensus 437 L~GR~ 441 (701)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99873
No 122
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.06 E-value=1.1 Score=40.46 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCC
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~ln 433 (701)
....-.||+||.+| ...||.++|+.||.|.=- .+.| .-|||...+.+.|..|+..+.
T Consensus 7 ~RdHVFhltFPkeW--K~~DI~qlFspfG~I~Vs-Wi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEW--KTSDIYQLFSPFGQIYVS-WIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT----HHHHHHHCCCCCCEEEE-EECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHh--hhhhHHHHhccCCcEEEE-EEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 34457889999998 578999999999997543 3433 569999999999999988754
No 123
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=0.21 Score=54.96 Aligned_cols=22 Identities=41% Similarity=1.020 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCcccCC
Q 005337 232 RPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (701)
.+|+||++|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999995
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=86.58 E-value=2 Score=51.15 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHhhhcCCCe-eEEEEee-c--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 380 FPADSTFREEDVSNYFSIYGPV-QDVRIPY-Q--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 380 ~~~~~~~TEEdLre~FSqFG~V-~dVrIp~-D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
++-.++++=+||-++|..|-.+ .+|+|-+ | +.-|=+-|.|+++++|.+|...++++.|..|+|++..
T Consensus 873 ~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 873 NNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3456899999999999999766 4555554 2 7789999999999999999999999999999998753
No 125
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=86.39 E-value=1.7 Score=48.91 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEEEEecc
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR-~L~Vk~Ak 448 (701)
+.+.||-+.++ +..++||+|++.|.+-|-++....-..+.|-++.+.+.+.|+|..|+-.|+.|.+.+. -++|...+
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 55556666654 3479999999999999998888777777888999999999999999999999999776 78888765
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.83 E-value=0.86 Score=50.27 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCC--CeeEEEEee----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG--~V~dVrIp~----DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
--+||+++. |-+|++||-+....-| .|.++++.. +++||||.|.......+++.++.|....|.|..-.|-.+
T Consensus 81 ~~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 357999764 6677777777766655 344444432 389999999999999999999999999999988777655
Q ss_pred c
Q 005337 448 K 448 (701)
Q Consensus 448 k 448 (701)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.76 E-value=0.29 Score=53.43 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=59.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHH--HhhhcCCCeeEEEEeecC-------CCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 005337 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ-------KRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLr--e~FSqFG~V~dVrIp~Dk-------sRGFGFVTF~~~E~A~~ALe~lng~~L~GR~ 441 (701)
...+-+||..+..--.+|..|+ +||++||.|..|.+-.+. .--=++|||...|+|..+|...++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3445566654433335677776 799999999999886642 1112899999999999999999999999998
Q ss_pred EEEEecccC
Q 005337 442 VLVKPYKEK 450 (701)
Q Consensus 442 L~Vk~Ak~K 450 (701)
++......+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 766554444
No 128
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.52 E-value=1.6 Score=47.57 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=51.1
Q ss_pred CHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE-EEEEecccC
Q 005337 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEK 450 (701)
Q Consensus 387 TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~-L~Vk~Ak~K 450 (701)
....|-.+|++||+|++..... .-.|=+|-|...-+|++||.+ |+..|+|.. |-|++...|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 4577889999999999987764 778999999999999999999 999999865 456665544
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.44 E-value=3.3 Score=41.05 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=55.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHH---hhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 370 NPASRQIYLTFPADSTFREEDVSN---YFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre---~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
.+.-.||.|..+.----..||++. ..+.||+|++|.+. .|--|.|+|.+..+|=.|+.+... ..-|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 466678999854332233455554 46789999999875 456799999999999999998654 56777788876
Q ss_pred cc
Q 005337 447 YK 448 (701)
Q Consensus 447 Ak 448 (701)
-+
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 43
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=84.58 E-value=1.5 Score=49.10 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=59.0
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee---c----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~---D----ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
-|-|+++ +..+|.+.++.+|+-.|+|.+++|+- | ...-.+||.|.+..+|..|--. ....+-++.|.|-+|
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 7888866 55799999999999999999999854 2 3444899999999999888554 666777778888877
Q ss_pred ccC
Q 005337 448 KEK 450 (701)
Q Consensus 448 k~K 450 (701)
-.-
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 544
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.21 E-value=2.8 Score=42.59 Aligned_cols=62 Identities=16% Similarity=0.025 Sum_probs=47.5
Q ss_pred CHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEecccC
Q 005337 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKEK 450 (701)
Q Consensus 387 TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~ln--g~~L~GR~L~Vk~Ak~K 450 (701)
....|+++|..|+++....+.+ +-+=-.|.|.+.+.|.+|...++ +..+.|..++|..++.-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4589999999999999998876 55568999999999999999999 89999999999888543
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.65 E-value=5.9 Score=33.82 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=42.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcC---CCeeEEEEeecCCCceEEEEECCHHHHHHHHHhC
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqF---G~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~l 432 (701)
..|+|.+.. +++.+||..||..| .....|..+-|. -+=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 467887763 57899999999999 234678888763 3679999999999999864
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.39 E-value=1.6 Score=53.00 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=69.6
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEe
Q 005337 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKP 446 (701)
Q Consensus 369 ~~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~G--R~L~Vk~ 446 (701)
.....+.++|+.+..| +....|...|..||.|..|.+-. ..-|++|.|++...++.|+..|.+.-|.| ++++|.+
T Consensus 451 kst~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3455688999988888 57789999999999999976644 66799999999999999999999888866 7799998
Q ss_pred cccCCCCc
Q 005337 447 YKEKGKVP 454 (701)
Q Consensus 447 Ak~K~k~~ 454 (701)
+.+-...+
T Consensus 528 a~~~~~~P 535 (975)
T KOG0112|consen 528 ASPPGATP 535 (975)
T ss_pred ccCCCCCh
Confidence 88766554
No 134
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.25 E-value=1.4 Score=47.40 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=26.6
Q ss_pred ceEEEcCC-CCC----------CCCHHHHHHhhhcCCCeeEEEEee
Q 005337 374 RQIYLTFP-ADS----------TFREEDVSNYFSIYGPVQDVRIPY 408 (701)
Q Consensus 374 RtIYV~~~-~~~----------~~TEEdLre~FSqFG~V~dVrIp~ 408 (701)
.|||+..+ .-| --+|+.|+..|..||+|..|.||.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 47888643 223 146889999999999999999964
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=81.11 E-value=2.7 Score=47.53 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=58.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCC-eEEcCeEEEEEecccCCC
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng-~~L~GR~L~Vk~Ak~K~k 452 (701)
..+|++|+. ..++..||+.+|..--.-..=.++ -+.||+||...+..-|.+|++.+++ ..+.|+++.|....+|+.
T Consensus 2 nklyignL~-p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLS-PQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccC-CCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 358999774 478999999999865111111122 2569999999999999999999886 568999999988877654
Q ss_pred C
Q 005337 453 V 453 (701)
Q Consensus 453 ~ 453 (701)
+
T Consensus 79 r 79 (584)
T KOG2193|consen 79 R 79 (584)
T ss_pred H
Confidence 3
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=78.11 E-value=0.35 Score=58.06 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=55.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEe----ecCCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP----YQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp----~DksRGFGFVTF~~~E~A~~ALe~lng~~L~ 438 (701)
+..-++||.++ +..+.+++|...|+.+|.|..|+|. .++-||+|+|.|..++.+.+|+.....+.+.
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 44457888854 6789999999999999999999886 2489999999999999999999985555554
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=77.99 E-value=4.3 Score=45.55 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=55.5
Q ss_pred CCCcceEEEc-CCCCCCCCHHHHHHhhhc----CCCeeEEEEee--c-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 005337 370 NPASRQIYLT-FPADSTFREEDVSNYFSI----YGPVQDVRIPY--Q-QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (701)
Q Consensus 370 ~~~sRtIYV~-~~~~~~~TEEdLre~FSq----FG~V~dVrIp~--D-ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~ 441 (701)
.+...++.|+ .-..|+.++.+|.++|.+ -|.++.|-.++ | |.-|=|||.|..+++|++||.+ +...|.-|-
T Consensus 156 lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 156 LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 3444566665 345789999999999973 23555665554 3 8889999999999999999998 777666665
Q ss_pred EEEE
Q 005337 442 VLVK 445 (701)
Q Consensus 442 L~Vk 445 (701)
|.+.
T Consensus 235 IElF 238 (508)
T KOG1365|consen 235 IELF 238 (508)
T ss_pred HHHH
Confidence 5543
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.68 E-value=1.6 Score=46.60 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=59.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCC----CeEEcCeEEEEEe
Q 005337 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (701)
Q Consensus 374 RtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~ln----g~~L~GR~L~Vk~ 446 (701)
..|||+++.. -++-+.++.-|+.||+|+...+.-| +.-+=|+|.|...-.+.+|+...+ +-...++++.|.+
T Consensus 32 a~l~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 7899997654 5788999999999999988776655 777889999999999999988753 2455778888865
Q ss_pred cc
Q 005337 447 YK 448 (701)
Q Consensus 447 Ak 448 (701)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.23 E-value=1.4 Score=53.31 Aligned_cols=75 Identities=12% Similarity=0.006 Sum_probs=63.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 373 sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~---DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
+..++|.++ ++..|.+.++.+++.+|.+++++++. ++.+|.+||.|.++.++..++..++...+.-+.+.|....
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 445666654 67899999999999999999999876 3899999999999999999999988888877777776543
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.61 E-value=7.9 Score=33.24 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCC-----CeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYG-----PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG-----~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~A 447 (701)
++||..----.++..+|-.++..-+ .|-+|+|. ..|.||+-... .|..+++.|++..++|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3455322223578889999888775 45566664 36999987554 688899999999999999999875
No 141
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=73.90 E-value=1.1 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.840 Sum_probs=20.9
Q ss_pred CcccccccccccCCCCC-CcccCC
Q 005337 231 WRPCLYFARGYCKNGSS-CRFVHG 253 (701)
Q Consensus 231 ~kPC~YFarG~CK~Gss-CrF~Hg 253 (701)
.-.|+=|.||.|++|.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 45899999999999998 999994
No 142
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=72.99 E-value=1.3 Score=48.00 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=20.6
Q ss_pred cccccccccccCCCCCCcccCC
Q 005337 232 RPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (701)
-.|-||-+|.|.+|.-|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 4699999999999999999997
No 143
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=68.74 E-value=4.7 Score=47.34 Aligned_cols=81 Identities=7% Similarity=0.056 Sum_probs=64.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhh-cCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEE---cCeE
Q 005337 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (701)
Q Consensus 366 ~gs~~~~sRtIYV~~~~~~~~TEEdLre~FS-qFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L---~GR~ 441 (701)
.++-.+.++-|||.++. --||.-.|+++.+ ..|.|++..| |+-|.-|||+|.+.++|.+...+|++... +++.
T Consensus 437 SPsR~~~SnvlhI~nLv-RPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLV-RPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeeccc-ccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 45667788999999664 3589999999999 6788888744 44556699999999999999999988665 7777
Q ss_pred EEEEeccc
Q 005337 442 VLVKPYKE 449 (701)
Q Consensus 442 L~Vk~Ak~ 449 (701)
|.|.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 87776653
No 144
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=67.77 E-value=2.6 Score=45.56 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.6
Q ss_pred Ccccccc-cccccCCCCCCcccCCC
Q 005337 231 WRPCLYF-ARGYCKNGSSCRFVHGG 254 (701)
Q Consensus 231 ~kPC~YF-arG~CK~GssCrF~Hg~ 254 (701)
.-||+|| ..|.|+.|+.|.|.|.+
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 4589999 99999999999999974
No 145
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=67.76 E-value=1.3 Score=53.69 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=63.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 370 ~~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
..+++|+|+++. +.++++.+|+..|..+|.|.+|.|-.- +---||||.|.+.+.+-.|+..+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 577899999965 678999999999999999999998542 3335999999999999999988877777555666655
Q ss_pred ccc
Q 005337 447 YKE 449 (701)
Q Consensus 447 Ak~ 449 (701)
...
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 543
No 146
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=64.32 E-value=4.1 Score=44.85 Aligned_cols=25 Identities=40% Similarity=0.905 Sum_probs=23.5
Q ss_pred CCCCcccccccccccCCCCCCcccC
Q 005337 228 GLGWRPCLYFARGYCKNGSSCRFVH 252 (701)
Q Consensus 228 ~~g~kPC~YFarG~CK~GssCrF~H 252 (701)
..+-..|+||-+|-||+|..|-|+|
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flh 98 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLH 98 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchh
Confidence 5678899999999999999999999
No 147
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=60.94 E-value=26 Score=36.35 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=52.4
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEE--cCeEEEEEec
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPY 447 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L--~GR~L~Vk~A 447 (701)
.+.|..++. .-+=.||+++..+-|.|--..|-+| |.|.|+|...|+.+-|+.+|+.+.+ .|-..++...
T Consensus 117 RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 117 RVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eEEEecCCC-CCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 455554433 3566999999999999987777665 7999999999999999999876554 4555555443
No 148
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=58.51 E-value=9.6 Score=42.94 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=57.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcCCCeeE---EEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqFG~V~d---VrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~Ak 448 (701)
-|-++.+ .|..+.|||-.+|..|-.-++ |.|+.. +.-|=|||.|.+.|.|..|..+-+++....|-|.|-...
T Consensus 282 cvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 282 CVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred eeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 4445544 688999999999999864322 556553 888999999999999999998877788889999998764
No 149
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=57.24 E-value=5.3 Score=46.37 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=22.7
Q ss_pred CCCcccccccccccCCCCCCcccCC
Q 005337 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 229 ~g~kPC~YFarG~CK~GssCrF~Hg 253 (701)
...-||-=|-+|-|++|-+|.|.||
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 3467999999999999999999998
No 150
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=55.72 E-value=4.9 Score=42.18 Aligned_cols=22 Identities=50% Similarity=1.049 Sum_probs=18.6
Q ss_pred ccccc-ccccccCCCCCCcccCC
Q 005337 232 RPCLY-FARGYCKNGSSCRFVHG 253 (701)
Q Consensus 232 kPC~Y-FarG~CK~GssCrF~Hg 253 (701)
-=|+| -+.|.|-+|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 34865 57999999999999995
No 151
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=55.51 E-value=51 Score=31.04 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=48.9
Q ss_pred eEEEcCCCCCCCCHHHHHHhhhcC-CCeeEEEEeec--CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 005337 375 QIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (701)
Q Consensus 375 tIYV~~~~~~~~TEEdLre~FSqF-G~V~dVrIp~D--ksRGFGFVTF~~~E~A~~ALe~lng~~L~G 439 (701)
++-+-..+.+-++-++|..+.+.+ ..|..+||++| ..|=...++|.+.+.|+.-....||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344434455667778887666665 46778899997 567678899999999999999999877644
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=49.77 E-value=9.2 Score=41.31 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=62.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEee----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~----DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
....++|++.. .+.+.+.+...+|.++|.+.++.+.. +.++||+.|.|...+.+..++...-...+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 45778888854 56677777889999999999888765 28999999999999999999998544677777776655
Q ss_pred cccCC
Q 005337 447 YKEKG 451 (701)
Q Consensus 447 Ak~K~ 451 (701)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 55444
No 153
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=48.82 E-value=6.9 Score=40.56 Aligned_cols=23 Identities=43% Similarity=0.963 Sum_probs=20.2
Q ss_pred Cccc-ccccccccCCCCCCcccCC
Q 005337 231 WRPC-LYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 231 ~kPC-~YFarG~CK~GssCrF~Hg 253 (701)
--.| .|=..|||--|-+|+|+|-
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cccccchhhcccccCCchhhhhhh
Confidence 3468 7889999999999999995
No 154
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=48.58 E-value=9.9 Score=26.70 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=15.8
Q ss_pred cccccccc-ccCCCCCCcccC
Q 005337 233 PCLYFARG-YCKNGSSCRFVH 252 (701)
Q Consensus 233 PC~YFarG-~CK~GssCrF~H 252 (701)
-|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 48998888 8865 5899999
No 155
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=48.12 E-value=23 Score=41.73 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=51.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhc--CCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEE
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVL 443 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSq--FG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~ln--g~~L~GR~L~ 443 (701)
..+|.|.|-.-+.-++.+|+|+.+|.- +=++.+|..-. .- =-||||++..+|+.|.+-|. -.+|.|+.|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 345667665444557789999999975 77889998865 22 36999999999999987653 2456666654
No 156
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=43.98 E-value=8.8 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.902 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCCCCCcccCC
Q 005337 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 229 ~g~kPC~YFarG~CK~GssCrF~Hg 253 (701)
-.-|-|.+|.+|||.+|.+|++.|.
T Consensus 132 t~~k~c~~~~~g~c~~g~~c~~~h~ 156 (325)
T KOG1040|consen 132 TAIKKCKWYKEGFCRGGPSCKKRHE 156 (325)
T ss_pred hhhhccchhhhccCCCcchhhhhhh
Confidence 4578999999999999999999996
No 157
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=43.18 E-value=12 Score=40.41 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.8
Q ss_pred CCCCCccc-ccccccccCC-CCCCcccCC
Q 005337 227 SGLGWRPC-LYFARGYCKN-GSSCRFVHG 253 (701)
Q Consensus 227 ~~~g~kPC-~YFarG~CK~-GssCrF~Hg 253 (701)
..+.-..| .|.-.|.||. |.+|||.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 45678899 5567899999 999999987
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=40.21 E-value=30 Score=34.74 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=43.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhhc-CCCe---eEEEEeec------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 005337 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (701)
Q Consensus 372 ~sRtIYV~~~~~~~~TEEdLre~FSq-FG~V---~dVrIp~D------ksRGFGFVTF~~~E~A~~ALe~lng~~L~G 439 (701)
...+|.|+.++ .++||+++.+..+. ++.. ..+.-..+ ..-.-|||.|.+.+++..-.+.++|+.+.+
T Consensus 6 ~~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34588888664 57999999998877 6766 33331111 122349999999999999999999977643
No 159
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=39.01 E-value=15 Score=39.93 Aligned_cols=24 Identities=46% Similarity=1.004 Sum_probs=22.4
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005337 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg 253 (701)
.--+|++|-+|.|+.|-.|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 456999999999999999999998
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=38.82 E-value=6.4 Score=41.46 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHhhhcCCCeeEEEEeec---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 005337 382 ADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (701)
Q Consensus 382 ~~~~~TEEdLre~FSqFG~V~dVrIp~D---ksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk 445 (701)
.+-.++++.+.+.|++-|+|..+|++++ +.|.|+||++.-...+-.++..-.+..+--+++.++
T Consensus 92 ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 92 LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG 158 (267)
T ss_pred hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence 3557899999999999999999999985 799999999988888888877655444444444443
No 161
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=37.19 E-value=12 Score=39.77 Aligned_cols=22 Identities=36% Similarity=0.963 Sum_probs=20.4
Q ss_pred cccccccccccCCCCCCcccCC
Q 005337 232 RPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (701)
-.|-.|..+.|.+|..|+|+||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 4699999999999999999998
No 162
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=35.34 E-value=24 Score=43.26 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeE--EcCeEEEEEecc
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF--VCDARVLVKPYK 448 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~--L~GR~L~Vk~Ak 448 (701)
+.--+.|+.+++ -..+-.-|..+|++||.|.+++..+| -..+.|+|...+.|..|++++.|.+ +.|.+.+|..++
T Consensus 296 plqp~~~~~nn~-v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNA-VNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhccc-ccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 444455565443 35778899999999999999999874 4569999999999999999998765 478888888776
Q ss_pred c
Q 005337 449 E 449 (701)
Q Consensus 449 ~ 449 (701)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 163
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=32.87 E-value=36 Score=39.73 Aligned_cols=28 Identities=32% Similarity=0.772 Sum_probs=22.7
Q ss_pred cc-ccccccccCCCCCCcccCCCCCCCCC
Q 005337 233 PC-LYFARGYCKNGSSCRFVHGGETGSGN 260 (701)
Q Consensus 233 PC-~YFarG~CK~GssCrF~Hg~~~~~~n 260 (701)
-| .|-..|+|..|-+|||+-+++...+|
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~ 144 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDIEGN 144 (614)
T ss_pred ccceeeccccCCccceeehhhcccCcccc
Confidence 47 88899999999999999877654444
No 164
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=29.98 E-value=24 Score=39.02 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=20.1
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005337 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg 253 (701)
-+.=|+=|++|.|.+-+ |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 36678889999999987 999997
No 165
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.52 E-value=19 Score=39.29 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=21.4
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005337 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (701)
Q Consensus 229 ~g~kPC-~YFarG~CK~GssCrF~Hg 253 (701)
+---.| .|=..|||-.|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 344579 7889999999999999995
No 166
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=28.43 E-value=27 Score=41.70 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 005337 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (701)
Q Consensus 371 ~~sRtIYV~~~~~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~Vk~ 446 (701)
+..-++||+++ .+.+..+-+..+...+|-|..+.... |||..|........|+..+....++|..+.++.
T Consensus 38 ~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44556777754 56788888899999999999887665 999999999999999999888889999888866
No 167
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=27.91 E-value=22 Score=37.44 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=18.4
Q ss_pred cccccccccccCCCCCCcccCCC
Q 005337 232 RPCLYFARGYCKNGSSCRFVHGG 254 (701)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg~ 254 (701)
--|+||--|.|.+- +|||+|=+
T Consensus 262 pacryfllgkcnnp-ncryvhih 283 (377)
T KOG1492|consen 262 PACRYFLLGKCNNP-NCRYVHIH 283 (377)
T ss_pred chhhhhhhccCCCC-CceEEEEe
Confidence 34999999999875 89999953
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.61 E-value=78 Score=27.31 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.5
Q ss_pred HHHHHhhhcCCCeeEEEE
Q 005337 389 EDVSNYFSIYGPVQDVRI 406 (701)
Q Consensus 389 EdLre~FSqFG~V~dVrI 406 (701)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999998877
No 169
>PF01837 DUF39: Domain of unknown function DUF39; InterPro: IPR002708 This domain, whose function is not known, is about 320 residues long and is found in proteins that have two C-terminal CBS domains, IPR000644 from INTERPRO. The protein O26943 from SWISSPROT is described as inosine-5'-monophosphate dehydrogenase related protein VIII, based on the sequence simarity it shares to the CBS domains.
Probab=21.39 E-value=91 Score=34.89 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCCCCcceEEEcCCCCCCC-CHHHHHHhhhc----CCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 005337 368 IVNPASRQIYLTFPADSTF-REEDVSNYFSI----YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (701)
Q Consensus 368 s~~~~sRtIYV~~~~~~~~-TEEdLre~FSq----FG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L 442 (701)
.+...--++||+.-..--+ +|+.++..--. .=+|.|+.+|+.....+|.|+|.+. +.-...|+|+.|
T Consensus 240 ~~~~yG~~l~vgigiPIPVLne~i~~~~~v~D~dI~~pV~D~~~p~~~r~~~g~vsYael--------~sG~I~i~g~~v 311 (340)
T PF01837_consen 240 FFTGYGPELYVGIGIPIPVLNEEIARYTAVRDEDIPLPVVDYSYPRRDRPPLGEVSYAEL--------KSGSIEINGKEV 311 (340)
T ss_pred eecccCceeEEeecccccccCHHHHHhhccccccccceeeeeccccCCCCccceecHHHh--------ccceeEecCccc
Confidence 4455556888873323334 55555543322 4578888888876778999999655 224567999999
Q ss_pred EEEecccCCCCchHHHHHHHhhhcCCC
Q 005337 443 LVKPYKEKGKVPDKYRKQQQQVERGEF 469 (701)
Q Consensus 443 ~Vk~Ak~K~k~~~e~rkqqq~~erG~f 469 (701)
.+.+...+.+-.+--..-++.++.|+|
T Consensus 312 pt~~~Ss~~~A~~iA~~LK~~I~~G~F 338 (340)
T PF01837_consen 312 PTAPLSSRKRAREIAEELKEWIESGEF 338 (340)
T ss_pred cccccchHHHHHHHHHHHHHHHhcCce
Confidence 865544332211111123456676665
No 170
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=20.30 E-value=5.7e+02 Score=22.13 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHhhhcCCCeeEEEEeecCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 005337 383 DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (701)
Q Consensus 383 ~~~~TEEdLre~FSqFG~V~dVrIp~DksRGFGFVTF~~~E~A~~ALe~lng~~L~GR~L~V 444 (701)
--.++-++++..+..|+- .+|+. | ..|| ||.|.+.++|++.....++..+.+.++.+
T Consensus 9 ~~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 9 VHGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 346788999999999965 44443 2 4455 89999999999999998888888877664
Done!