BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005338
(701 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/695 (61%), Positives = 485/695 (69%), Gaps = 71/695 (10%)
Query: 1 MEDSEGGLSFDFEGGLDAGPGMPTASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHA 60
MED++G LSFDFEGGLD+GP TAS P +++++AA + AP+ DH+
Sbjct: 1 MEDADG-LSFDFEGGLDSGPVQNTASVPVAPPENSSSAAV------NVAPTY-----DHS 48
Query: 61 SAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDC 120
SA V RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMP+CRFFRL+GECREQDC
Sbjct: 49 SATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDC 108
Query: 121 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEVLQKIQQISSYNHGNPNK 180
VYKHTNEDIKECNMYKLGFCPNGPDCRYRH KLPGPPP VEEVLQKIQQ+++YN+G N+
Sbjct: 109 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGT-NR 167
Query: 181 HFQQRGAFSHQTDKSQFSQGPNAVNQGAAGKSSTAESANVHQQQLVQQPQQQGTQTTQMQ 240
+Q R D+ Q Q P + ES N+ QQQ Q Q Q + +
Sbjct: 168 LYQARNVAPQLQDRPQ-GQVPM--------QGQPQESGNLQQQQQQQPQQSQHQVSQTL- 217
Query: 241 NLPNGLPNQTNRNATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
+PN +QTNR + PLPQG++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 218 -IPNPA-DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDS 275
Query: 301 AENVILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSF 360
ENVILIFSVNRTRHFQGCAKMTS+IGG +GGGNWK+ HGTA YGRNFSVKWLKLCELSF
Sbjct: 276 VENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSF 335
Query: 361 HKTRHLRNPYNENLPVKISRDCQELEPSIGEQLAALLYLEPDSELMAISVAAEAKREEEK 420
HKTR+LRNPYNENLPVKISRDCQELEPS+GEQLA+LLYLEPDSELMAIS+AAEAKREEEK
Sbjct: 336 HKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEK 395
Query: 421 AKGVNPDNGGDNPDIVPF--EDNEEEEEEESEEEEESLGTASQGRGRGRGMMWPGPMPLA 478
AKGVNP++ +NPDIVPF + EEEEE+ESEEEEES+ QGRGRGRG+MWP MPL
Sbjct: 396 AKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEEESMAGGPQGRGRGRGIMWPPQMPLG 455
Query: 479 RGARPVPGMRGFPPMMIG-ADGFSYGVTPDGFP-MPDLFGVAPRPFAPYGPRFSGDFTGP 536
RG RP+PGM GFP ++G D F YG P G+ MPD FG+ PRPF PYGPRF GDF GP
Sbjct: 456 RGIRPMPGMGGFPLGVMGPGDAFPYG--PGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGP 513
Query: 537 G-GMMFPGRPPQPGSVFPPNGFGGMMMGPGRPPFMGGMGPAATNPRGGRPVGVPPPFPNQ 595
GMMFPGRPPQ F G MG PRGGRP+ PP +
Sbjct: 514 VPGMMFPGRPPQ--------QFPHGGYGMMGGGRGPHMGGMGNAPRGGRPMYYPPATSSA 565
Query: 596 PQSSQNSSRAAKRDVRGSINDRNDRYSAGSDQGRAQEMGGPGRGPDDEVQYQQEGSKANQ 655
N + D RG D Q Q+ S +
Sbjct: 566 RPGPSNRKTPERSDERGVSGD----------------------------QQNQDASHDME 597
Query: 656 EDQYGSRNFRN--DESESEDEAPRRSRHGEGKKKR 688
+ + G+ + RN ESE EDEAPRRSRHGEGKK+R
Sbjct: 598 QFEVGN-SLRNEESESEDEDEAPRRSRHGEGKKRR 631
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/696 (57%), Positives = 459/696 (65%), Gaps = 55/696 (7%)
Query: 5 EGGLSFDFEGGLDAGPGMPTASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHASAPV 64
+G LSFDFEGGLD P SD
Sbjct: 3 DGDLSFDFEGGLDQPPAGGGGGPAPHSSDPGGVGGGGGGGGPGDGGGHGRGRGRG----- 57
Query: 65 PHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH 124
S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RMPVCRFFR FGECRE DC YKH
Sbjct: 58 -------SYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKH 110
Query: 125 TNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEVLQKIQQISSYNHGNPNKHFQQ 184
+ +D+KECNMYK+GFCPNGP+CRY+HVKLPGPPP VEEVLQKI QI S+N N ++H
Sbjct: 111 SYDDVKECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRH--- 167
Query: 185 RGAFSHQTDKSQFSQGPNAVNQGAAGKSST--AESANVHQQQLVQQPQQQG--------- 233
++ Q ++ Q QG NQ + ++T A+ A Q Q Q Q
Sbjct: 168 -NNYNQQGERPQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQ 226
Query: 234 -----TQTTQMQNLPNGLPNQTNRNATPLPQGISRYFIVKSCNRENLELSVQQGVWATQR 288
Q+Q++PNG NQ R ATPLPQG SRYFIVKSCNRENLE+SVQQG+WATQR
Sbjct: 227 QQQKPNTNDQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQR 286
Query: 289 SNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNF 348
SNEAKLNEAF+S ENVILIFS+NRTR+FQGCAKMTS+IGG +GGGNWK AHGTAHYGRNF
Sbjct: 287 SNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNF 346
Query: 349 SVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLAALLYLEPDSELMAI 408
S++WLKLCELSF KT HLRNPYN+NLPVKISRDCQELEP IGEQLA+LLYLEPDSEL AI
Sbjct: 347 SIQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAI 406
Query: 409 SVAAEAKREEEKAKGVNPDNGGDNPDIVPFEDNEEEEEEESEEEEESLGTASQGRGRGRG 468
+AAEAK+EEEKAKGV+ D DN DIV F+DNEEEEEEESEEEEE G SQGRGRGRG
Sbjct: 407 LIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGNGQESQGRGRGRG 466
Query: 469 MMWPGPMPLARGARPVPGMRGFPPMMIGADGFSYGVTPDGFPMPDLFGVAPRPFAPYGPR 528
MMWP MP+ RG P+ G RGFPP MIG G MPD FGV PR F P+GPR
Sbjct: 467 MMWPPQMPMLRGVGPMMGGRGFPPNMIGDGFGFGGGF----GMPDPFGV-PRGFPPFGPR 521
Query: 529 FSGDFTGPG---GMMFPGRPPQPGSVFPPNGFGGMMMGPGRPPFMGGMGPAATNPRGGRP 585
F GDF G GM+FPGRPPQPG +FP MMMGPGR P + G R RP
Sbjct: 522 FPGDFARGGPMPGMVFPGRPPQPGGMFPMG--LEMMMGPGRGP-LMGGLGMGGPGRPNRP 578
Query: 586 VGVPPPFPNQPQSSQNSSRAAKRDVRGSINDRNDRYSAGSDQGRAQEMGGPGRGPDDEVQ 645
VG+ PF P N R KR+ R +R DRY SDQG RG D
Sbjct: 579 VGM-APFMPPPPPPNN--RGTKREQRRPGGERGDRYETTSDQG--------SRGHDATGN 627
Query: 646 YQQEGSKANQEDQYGSRNFRNDESESEDE-APRRSR 680
EG+++ D+YG R+D+SES++E APRRSR
Sbjct: 628 SGAEGARSQSGDRYGRSALRDDDSESDEEAAPRRSR 663
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKM 322
RYFI+KS N NLE+S Q+G+W+T SNE KLN AF + V L+FSV + HFQG ++M
Sbjct: 530 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 589
Query: 323 TSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDC 382
+S+IG +W G+A G F V+W++ L F HL NP+N+N V+ISRD
Sbjct: 590 SSEIGRE-KSQDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 644
Query: 383 QELEPSIGEQLAAL 396
QELEP +GEQL L
Sbjct: 645 QELEPQVGEQLLQL 658
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKM 322
RYFI+KS N NLE+S Q+G+W+T SNE KLN AF + V L+FSV + HFQG ++M
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363
Query: 323 TSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDC 382
+S+IG +W G+A G F V+W++ L F HL NP+N+N V+ISRD
Sbjct: 1364 SSEIGRE-KSQDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1418
Query: 383 QELEPSIGEQLAAL 396
QELEP +GEQL L
Sbjct: 1419 QELEPQVGEQLLQL 1432
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKM 322
RYFI+KS N NLE+S Q+G+W+T SNE KLN AF + V L+FSV + HFQG ++M
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRM 1348
Query: 323 TSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDC 382
+S+IG +W G+A G F V+W++ L F HL NP+N+N V+ISRD
Sbjct: 1349 SSEIGRE-KSQDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1403
Query: 383 QELEPSIGEQLAAL 396
QELEP +GEQL L
Sbjct: 1404 QELEPLVGEQLLQL 1417
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 262 SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAK 321
+R+F++KS N EN+ L+ +GVW+T NE KLN AF SA +VILIFSV + FQG A+
Sbjct: 355 ARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFAR 414
Query: 322 MTSKIGGSVGGGNWKYAHGTA--HYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
++S+ +W G + G F + W+ EL F K+ HL NP+NE+ PVKI
Sbjct: 415 LSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIG 474
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+E G QL L
Sbjct: 475 RDGQEIELECGTQLCLLF 492
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Query: 248 NQTNRNATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILI 307
+QT++ + L R+F++KS N EN+ L+ +GVW+T NE KLN AF SA +VILI
Sbjct: 346 DQTSKLKSVLQDA--RFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILI 403
Query: 308 FSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTA--HYGRNFSVKWLKLCELSFHKTRH 365
FSV + FQG A+++S+ +W G + G F + W+ EL F K+ H
Sbjct: 404 FSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAH 463
Query: 366 LRNPYNENLPVKISRDCQELEPSIGEQLAALL 397
L NP+NE+ PVKI RD QE+E G QL L
Sbjct: 464 LTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 495
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 63 PVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVY 122
P H G + VC+HWLR LC KGD C FLHQYD +RMP C F+ FG+C ++C +
Sbjct: 56 PFRHDRGEK---MVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSF 112
Query: 123 KHTNEDIK--ECNMYKLGFCPNGPDCRYRHV 151
H K +C Y GFC +GP C+YRHV
Sbjct: 113 LHVKPAFKSQDCPWYDQGFCKDGPLCKYRHV 143
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 62 APVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCV 121
P H SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FGEC ++C
Sbjct: 55 CPFRHISGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECP 111
Query: 122 YKHTNED--IKECNMYKLGFCPNGPDCRYRHVK 152
+ H + + IK+C Y GFC +GP CR+RH +
Sbjct: 112 FLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR 144
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 8 LSFDFEGGLDAGPGMPTASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHASAPVPHH 67
L FD E ++ G P + + AA S+ G P H
Sbjct: 11 LRFDLELAVEQQLGAQPLPFPGMDK-------SGAAVCEFFLKSACGKG---GMCPFRHI 60
Query: 68 SGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNE 127
SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FGEC ++C + H +
Sbjct: 61 SGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDP 117
Query: 128 D--IKECNMYKLGFCPNGPDCRYRHVK 152
+ IK+C Y GFC +GP CR+RH +
Sbjct: 118 ESKIKDCPWYDRGFCKHGPLCRHRHTR 144
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 62 APVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCV 121
P H SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FGEC ++C
Sbjct: 55 CPFRHISGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECP 111
Query: 122 YKHTN--EDIKECNMYKLGFCPNGPDCRYRHVK 152
+ H + IK+C Y GFC +GP CR+RH +
Sbjct: 112 FLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR 144
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 62 APVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCV 121
P H SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FGEC ++C
Sbjct: 55 CPFRHISGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECP 111
Query: 122 YKHTNED--IKECNMYKLGFCPNGPDCRYRHVK 152
+ H + + IK+C Y GFC +GP CR+RH +
Sbjct: 112 FLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR 144
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 62 APVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCV 121
P H SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FGEC ++C
Sbjct: 55 CPFRHISGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECP 111
Query: 122 YKHTN--EDIKECNMYKLGFCPNGPDCRYRHVK 152
+ H + IK+C Y GFC +GP CR+RH +
Sbjct: 112 FLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR 144
>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=YTH1 PE=3 SV=1
Length = 366
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 74 RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNEDIK-- 130
++TVC+HWLR LC K D C +LH+YD R+P CRF+ FG C DC+Y H + IK
Sbjct: 106 KRTVCKHWLRGLCKKDDQCDYLHEYDMRRIPECRFYATFGFCNSGDDCLYLHVDPAIKRR 165
Query: 131 ECNMYKLGFCPNGPDCRYRHVK 152
EC Y GFCP GP C +HV+
Sbjct: 166 ECERYNRGFCPKGPLCTKKHVR 187
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 62 APVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCV 121
P H SG ++ VC+HWLR LC KGD C FLH+YD ++MP C F+ FG C
Sbjct: 55 CPFRHISGEKT---VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGP----LCR 107
Query: 122 YKHTNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVE 161
++HT I C Y +GFCP GP C++ H + P + E
Sbjct: 108 HRHTRRVI--CVNYLVGFCPEGPSCKFMHPRFELPMGTTE 145
>sp|Q6CKU1|YTH1_KLULA mRNA 3'-end-processing protein YTH1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=YTH1 PE=3 SV=1
Length = 210
Score = 86.7 bits (213), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 75 QTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQ-DCVYKHTNE--DIKE 131
+ VC+HWLR LC K D C +LH+Y+ +MP C FF G C + +C Y H + ++E
Sbjct: 64 KIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEE 123
Query: 132 CNMYKLGFCPNGPDCRYRHVK 152
C Y +GFCP+GP C +HVK
Sbjct: 124 CEDYNMGFCPSGPACTKKHVK 144
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1
Length = 170
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 76 TVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTN--EDIKEC 132
VC+HWLR LC KG+ C FLH+Y+ +MP C F+ G C ++C+Y H + + + C
Sbjct: 52 VVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGVC 111
Query: 133 NMYKLGFCPNGPDCRYRHVKLPGPPP 158
Y +GFCP GP CR +HV+ P P P
Sbjct: 112 AWYNMGFCPLGPICRGKHVRKPRPCP 137
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 85.1 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 55 AAPDHASAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGE 114
+ P + P H S S + VC+HWLR LC KGD C FLH+Y+ +MP C F+ G
Sbjct: 49 SCPQGNNCPNKHVSAMYS-NKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGY 107
Query: 115 CRE-QDCVYKHTN--EDIKECNMYKLGFCPNGPDCRYRHVK 152
C + +C+Y H + I EC Y GFC GP+C+ RHV+
Sbjct: 108 CTQTSECLYLHVDPQSKIPECLNYNQGFCSEGPNCKNRHVR 148
>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=YTH1 PE=3 SV=2
Length = 223
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 10 FDFEGGLDAGPGMPTASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHASAPVPHHSG 69
F FE P + N + D +N N++ P+ S H S+ +
Sbjct: 17 FKFE------PFLLKEYNFGLDPDRPVCQFYNPSNPNNSCPNGSLCPHKHVSSMYSN--- 67
Query: 70 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQ-DCVYKHTN-- 126
+ VC+HWLR LC K D C FLH+Y+ +MP C F+ G C + +C+Y H +
Sbjct: 68 -----KIVCKHWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLYLHVDPQ 122
Query: 127 EDIKECNMYKLGFCPNGPDCRYRHVK 152
I C+ Y+ GFCP+GP C RH++
Sbjct: 123 SKIPPCSSYEKGFCPDGPKCANRHIR 148
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
Query: 53 SGAAPDHASAPVPHHSGRRSFRQT------VCRHWLRSLCMKGDACGFLHQYDKSRMPVC 106
SG P+ P H S ++ + T VC+HWLR LC KG+ C FLH+Y+ +MP C
Sbjct: 48 SGHCPNGTRCPERHVSDSKTSQPTGGLNSLVCKHWLRGLCKKGEHCEFLHEYNLRKMPEC 107
Query: 107 RFFRLFGECREQD-CVYKHTN--EDIKECNMYKLGFCPNGPDCRYRHVK 152
FF G C D C+Y H + + C Y +GFCP GP+C +HV+
Sbjct: 108 NFFMRNGYCSNGDECLYLHIDPQSRLPPCPHYDMGFCPLGPNCSKKHVR 156
>sp|Q06102|YTH1_YEAST mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1
Length = 208
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 75 QTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQ-DCVYKHTN--EDIKE 131
+ VCRHWLR LC K D C +LH+Y+ +MP C FF G C + DC Y H + I +
Sbjct: 64 KIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLHIDPASKIPK 123
Query: 132 CNMYKLGFCPNGPDCRYRHVK 152
C Y++GFCP G C RH+K
Sbjct: 124 CENYEMGFCPLGSSCPRRHIK 144
>sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YTH1
PE=3 SV=1
Length = 209
Score = 80.9 bits (198), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 75 QTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQ-DCVYKHTN--EDIKE 131
+ VC+HWLR LC K D C +LH+Y+ +MP C FF G C + +C Y H + +++
Sbjct: 64 KIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHIDPTSKVQQ 123
Query: 132 CNMYKLGFCPNGPDCRYRHVK 152
C Y++GFCP G C +HVK
Sbjct: 124 CEDYRMGFCPLGTACPCKHVK 144
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ AF S + V L+FSVN + HF G
Sbjct: 390 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGV 449
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + G W + F VKW+ + ++ ++ RH+R N+N PV S
Sbjct: 450 AEMKSPVDYGTSAGVWS----QDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNS 505
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+ +Q+ ++
Sbjct: 506 RDTQEVPLEKAKQVLKII 523
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 73 FRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQD-CVYKHTN--EDI 129
F VC+HWLR LC KG++C FLH+Y+ +MP C FF G C D C+Y H + +
Sbjct: 94 FGSLVCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLHIDPLSRL 153
Query: 130 KECNMYKLGFCPNGPDCRYRHVK 152
C Y+ GFCP GP C +H +
Sbjct: 154 PPCPHYERGFCPLGPRCDKKHFR 176
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S V L+FSVN + HF G
Sbjct: 412 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 471
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F V+W+ + ++ + RH+R NEN PV S
Sbjct: 472 AEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNS 527
Query: 380 RDCQELEPSIGEQLAALL--YLEPDSELMAISVAAEAKREEEKAK 422
RD QE+ +Q+ ++ Y S S + + EEE K
Sbjct: 528 RDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 572
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S V L+FSVN + HF G
Sbjct: 411 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 470
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F V+W+ + ++ + RH+R NEN PV S
Sbjct: 471 AEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNS 526
Query: 380 RDCQELEPSIGEQLAALL--YLEPDSELMAISVAAEAKREEEKAK 422
RD QE+ +Q+ ++ Y S S + + EEE K
Sbjct: 527 RDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 571
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S V L+FSVN + HF G
Sbjct: 411 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 470
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F V+W+ + ++ + RH+R NEN PV S
Sbjct: 471 AEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNS 526
Query: 380 RDCQELEPSIGEQLAALL--YLEPDSELMAISVAAEAKREEEKAK 422
RD QE+ +Q+ ++ Y S S + + EEE K
Sbjct: 527 RDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVK 571
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 78.2 bits (191), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 75 QTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQ-DCVYKHTN--EDIKE 131
+ VC+HWLR LC K D C +LH+Y+ +MP C F+ G C + +C Y H + +
Sbjct: 65 KIVCKHWLRGLCKKNDNCEYLHEYNLRKMPECVFYAKNGFCTQSPECQYLHIDPLSKVPP 124
Query: 132 CNMYKLGFCPNGPDCRYRHVK 152
C Y++GFCP G C RH+K
Sbjct: 125 CEDYEMGFCPKGSACEKRHIK 145
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF---DSAENVILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ AF S V L+FSVN + HF G
Sbjct: 390 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGV 449
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + G W + F V+W+ + ++ ++ RH+R N+N PV S
Sbjct: 450 AEMKSPVDYGTSAGVWS----QDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNS 505
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+ +Q+ ++
Sbjct: 506 RDTQEVPLEKAKQVLKII 523
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 76.3 bits (186), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 55 AAPDHASAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGE 114
+ PD AP + VC+HWLR LC KG C FLH+Y+ +MP C+F+ G
Sbjct: 44 SCPDKHLAPT-------FLNKIVCKHWLRGLCKKGLNCEFLHEYNLQKMPECQFYVKNGF 96
Query: 115 CREQ-DCVYKHTN--EDIKECNMYKLGFCPNGPDCRYRHVK 152
C + DC Y H + I C Y+ GFC GP+C +H++
Sbjct: 97 CTQSPDCQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIR 137
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S + L+FSVN + HF G
Sbjct: 417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGV 476
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F VKW+ + ++ ++ RH+R N+N PV S
Sbjct: 477 AEMKSVVDYNAYAGVWS----QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNS 532
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+ +Q+ ++
Sbjct: 533 RDTQEVPLEKAKQVLKII 550
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S + L+FSVN + HF G
Sbjct: 417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGV 476
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F VKW+ + ++ ++ RH+R N+N PV S
Sbjct: 477 AEMKSVVDYNAYAGVWS----QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNS 532
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+ +Q+ ++
Sbjct: 533 RDTQEVPLEKAKQVLKII 550
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN---VILIFSVNRTRHFQGC 319
R FI+KS + +++ S++ +W + +L+ A+ S + L+FSVN + HF G
Sbjct: 417 RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGV 476
Query: 320 AKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKIS 379
A+M S + + G W + F VKW+ + ++ ++ RH+R N+N PV S
Sbjct: 477 AEMKSVVDYNAYAGVWS----QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNS 532
Query: 380 RDCQELEPSIGEQLAALL 397
RD QE+ +Q+ ++
Sbjct: 533 RDTQEVPLEKAKQVLKII 550
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 262 SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF---DSAENVILIFSVNRTRHFQG 318
SR+F++KS + ++++ S G+W++ +L+EA+ +S V L FS+N + F G
Sbjct: 155 SRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAKVFLFFSINTSGRFCG 214
Query: 319 CAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKI 378
A+M S + + W+ YG+ F V+W+ + +++ + P NE P+
Sbjct: 215 VAEMVSDLKMDLDTSIWE---DEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITH 271
Query: 379 SRDCQELEPSIGEQLAALLYLEPDSELMAI 408
SRD QE+ SIG + L+ DS++ +
Sbjct: 272 SRDTQEIPYSIGISIIN-LFKTQDSDIFSF 300
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNEDIKE--CN 133
VC+H+L+ LC KG C +LH+Y+ RMP C+ F G C DC+Y+H E + C
Sbjct: 91 VCKHFLKGLCKKGLKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 134 MYKLGFCPNGPDCRYRHVK 152
Y GFCP GP C RHV+
Sbjct: 151 HYDRGFCPLGPLCAKRHVR 169
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNED--IKECN 133
VC+H+L+ LC KG C +LH+Y+ RMP C+ F G C DC+Y+H E + C
Sbjct: 91 VCKHFLKGLCKKGMKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 134 MYKLGFCPNGPDCRYRHVK 152
Y GFCP GP C RHV+
Sbjct: 151 HYDQGFCPLGPLCAKRHVR 169
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 71 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNEDI 129
R + TVC+H+LR+LC GD C + H ++ MPVC +F G+C +C+Y H +
Sbjct: 92 REKKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFHPRDRR 151
Query: 130 KECNMYKLGFCPNGPDCRYRHVK 152
EC Y GFC GP+C +H++
Sbjct: 152 VECPDYNRGFCVLGPNCPRKHIR 174
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 71 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNEDI 129
R + TVC+H+LR+LC GD C + H ++ MPVC +F G+C +C+Y H +
Sbjct: 92 REKKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFHPRDRR 151
Query: 130 KECNMYKLGFCPNGPDCRYRHVK 152
EC Y GFC GP+C +H++
Sbjct: 152 VECPDYNRGFCVLGPNCPRKHIR 174
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECRE-QDCVYKHTNED--IKECN 133
VC+H+L+ LC KG C +LH+Y+ RMP C+ F G C DC+Y+H E + C
Sbjct: 91 VCKHFLKGLCKKGLKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 134 MYKLGFCPNGPDCRYRHVK 152
Y GFC GP C RHV+
Sbjct: 151 NYDQGFCELGPLCSKRHVR 169
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 77 VCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH--TNEDIKECN 133
VC ++R C K D +C F H K +MPVC +F L G C +C Y H + + C+
Sbjct: 694 VCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYF-LKGICSNSNCPYSHVYVSRKAEVCS 752
Query: 134 MYKLGFCPNGPDCRYRHVKL 153
+ G+CP G C+ +H L
Sbjct: 753 DFLKGYCPLGAKCKKKHTLL 772
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 77 VCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH--TNEDIKECN 133
VC ++R C K D C F H K +MPVC +F L G C +C Y H + + C+
Sbjct: 699 VCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYF-LKGICSNSNCPYSHVYVSRKAEVCS 757
Query: 134 MYKLGFCPNGPDCRYRHVKL 153
+ G+CP G C+ +H L
Sbjct: 758 DFLKGYCPLGAKCKKKHTLL 777
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 74 RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDC--VYKHTNEDIKE 131
R+T+C +L C K + C H+ D R+P CR+F L G+C +C V+ H +E+
Sbjct: 231 RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYF-LLGKCNNPNCRYVHIHYSENAPI 289
Query: 132 CNMY-KLGFCPNGPDCRYRHV 151
C + K GFC G C+ +H+
Sbjct: 290 CFEFAKYGFCELGTSCKNQHI 310
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYD-KSRMPVCRFFRLFGECRE-QDCVYKHTNEDIKECNM 134
+C+++L C+KGD C F H + + R +C+F+ L G C + ++C+Y H NE C
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFY-LQGYCTKGENCIYMH-NE--FPCKF 332
Query: 135 YKLGF-CPNGPDCRYRHVKL 153
Y G C G +C++ H L
Sbjct: 333 YHSGAKCYQGDNCKFSHDDL 352
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 60 ASAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYD-KSRMPVCRFFRLFGEC-RE 117
+ A + H+ R +Q +C+++L C+KGD C F H + + + +C+F+ + G C R
Sbjct: 180 SQAFINQHTVERKGKQ-ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFY-VQGYCTRG 237
Query: 118 QDCVYKHTNEDIKECNMYKLGF-CPNGPDCRYRHVKLPGPPPSVEEVLQKI 167
++C+Y H C Y G C G C++ H L P +E+L K+
Sbjct: 238 ENCLYLHNEYP---CKFYHTGTKCYQGEYCKFSHAPL---TPETQELLAKV 282
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYD-KSRMPVCRFFRLFGECRE-QDCVYKHTNEDIKECNM 134
+C+++L C+KGD C F H + + + VC+++ L G C + ++C+Y H+ C
Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYY-LQGYCTKGENCIYMHSE---FPCKF 330
Query: 135 YKLGF-CPNGPDCRYRHVKL 153
Y G C G C++ H L
Sbjct: 331 YHSGAKCYQGDKCKFSHDDL 350
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 67 HSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQD-CVYKHT 125
H ++ VC+++L+ C KG+ C ++H S P C+F+ +C + D C + H
Sbjct: 294 HDAELEKKKEVCKYYLQGYCTKGENCIYMH----SEFP-CKFYHSGAKCYQGDKCKFSHD 348
Query: 126 N 126
+
Sbjct: 349 D 349
>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus
GN=Zc3h8 PE=1 SV=2
Length = 305
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 64 VPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYD-KSRMPVCRFFRLFGECRE-QDCV 121
+ H+ R +Q VC+++L C+KGD C F H + + + +C+++ + G C + ++C+
Sbjct: 198 INQHTVERKGKQ-VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYY-VQGYCTKGENCL 255
Query: 122 YKHTNEDIKECNMYKLGF-CPNGPDCRYRHVKLPGPPPSVEEVLQKI 167
Y H+ C Y G C G C + H L +E+L K+
Sbjct: 256 YLHSEYP---CKFYHTGTKCYQGDHCNFSHAPLTA---ETQELLAKV 296
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 77 VCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHT--NEDIKECNM 134
VC +L LC + C H+ RMP C ++ L G C + C Y+H N C+
Sbjct: 273 VCTKFLNGLCANAN-CKLTHKVIPERMPDCSYY-LQGLCNNEACPYRHVHVNPIAPICDG 330
Query: 135 YKLGFCPNGPDCRYRH 150
+ G+C G +CR +H
Sbjct: 331 FLKGYCSEGDECRKKH 346
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 106 CRFFRLFGECREQD--CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEV 163
C+FF FG+C + D C Y H I C + G C N +C+ H +P P
Sbjct: 246 CQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANA-NCKLTHKVIPERMPDCSYY 304
Query: 164 LQ 165
LQ
Sbjct: 305 LQ 306
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 78 CRHWLRSLCMKGDACGFLHQ-YDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYK 136
CRH+L+ C +GD C F H +++ C +F + DC + H N
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDHDLSKYPCNNFIT 415
Query: 137 LGFCPNGPDCRYRH 150
GFC G C + H
Sbjct: 416 KGFCYRGDSCLFSH 429
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 101 SRMPVCRFFRLFGECRE-QDCVYKH---TNEDIKECNMYKLGFCPNGPDCRYRHVKLPGP 156
++ CR+F + G C++ +C Y H T++ C Y+ G C G CRY H K
Sbjct: 52 TKQVTCRYF-MHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTK---- 106
Query: 157 PPSVEEV 163
P EEV
Sbjct: 107 PLKREEV 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 308,997,981
Number of Sequences: 539616
Number of extensions: 15805317
Number of successful extensions: 108144
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 1298
Number of HSP's that attempted gapping in prelim test: 89089
Number of HSP's gapped (non-prelim): 13305
length of query: 701
length of database: 191,569,459
effective HSP length: 125
effective length of query: 576
effective length of database: 124,117,459
effective search space: 71491656384
effective search space used: 71491656384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)