Query 005338
Match_columns 701
No_of_seqs 396 out of 1488
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 8.3E-50 2.8E-54 391.4 10.6 161 247-409 13-175 (180)
2 2yu6_A YTH domain-containing p 100.0 4.7E-49 1.6E-53 372.9 13.4 137 258-399 4-140 (141)
3 2d9n_A Cleavage and polyadenyl 99.5 5.7E-15 2E-19 126.2 4.8 69 71-139 6-76 (77)
4 2rhk_C Cleavage and polyadenyl 99.3 4.1E-13 1.4E-17 113.6 2.9 57 70-126 11-67 (72)
5 2cqe_A KIAA1064 protein; CCCH 99.2 1.5E-11 5.1E-16 109.8 5.7 77 64-175 3-80 (98)
6 1m9o_A Tristetraproline; Cys3H 99.1 1.6E-11 5.4E-16 103.7 3.5 67 70-153 7-75 (77)
7 3d2q_A Muscleblind-like protei 99.1 3.6E-11 1.2E-15 100.9 2.1 61 72-152 3-64 (70)
8 2e5s_A Otthump00000018578; ZF- 99.0 3.9E-11 1.3E-15 107.2 1.6 62 71-152 16-78 (98)
9 3d2n_A Muscleblind-like protei 99.0 8.8E-11 3E-15 102.1 2.9 62 69-152 3-65 (83)
10 2rpp_A Muscleblind-like protei 99.0 1.4E-10 4.8E-15 102.0 3.6 68 60-152 5-73 (89)
11 2d9n_A Cleavage and polyadenyl 98.9 5.3E-10 1.8E-14 95.4 3.8 65 35-110 8-73 (77)
12 2rhk_C Cleavage and polyadenyl 98.6 1.9E-08 6.5E-13 85.0 2.8 53 100-154 13-69 (72)
13 3d2q_A Muscleblind-like protei 98.5 2E-08 6.8E-13 84.3 1.6 25 128-152 5-30 (70)
14 3u9g_A Zinc finger CCCH-type a 98.5 2.1E-08 7.3E-13 101.1 1.6 91 76-174 90-226 (229)
15 2cqe_A KIAA1064 protein; CCCH 98.4 6.5E-08 2.2E-12 86.3 1.1 58 35-107 11-69 (98)
16 3d2n_A Muscleblind-like protei 98.4 1.3E-07 4.5E-12 82.1 2.6 26 128-153 8-34 (83)
17 2e5s_A Otthump00000018578; ZF- 98.3 6.8E-08 2.3E-12 86.3 -0.1 66 25-99 8-79 (98)
18 2rpp_A Muscleblind-like protei 98.2 3.2E-07 1.1E-11 80.7 2.2 36 119-154 6-43 (89)
19 1m9o_A Tristetraproline; Cys3H 98.2 2.5E-07 8.6E-12 77.9 1.0 59 34-99 9-75 (77)
20 2lhn_A Nuclear polyadenylated 97.2 1.1E-06 3.9E-11 75.9 0.0 66 74-153 8-73 (80)
21 3u9g_A Zinc finger CCCH-type a 97.2 0.00034 1.2E-08 70.7 5.6 70 39-126 91-197 (229)
22 2lhn_A Nuclear polyadenylated 96.2 6.8E-05 2.3E-09 64.8 0.0 68 34-127 6-73 (80)
23 2hd9_A UPF0310 protein PH1033; 96.6 0.014 4.8E-07 55.2 11.3 130 263-397 2-144 (145)
24 2d9m_A Zinc finger CCCH-type d 96.6 0.0013 4.3E-08 55.4 3.5 29 72-100 17-45 (69)
25 2p5d_A UPF0310 protein mjecl36 95.5 0.029 1E-06 53.1 7.6 128 262-396 4-147 (147)
26 2d9m_A Zinc finger CCCH-type d 95.4 0.005 1.7E-07 51.8 1.8 32 121-152 12-43 (69)
27 2fc6_A Nuclear, target of EGR1 94.5 0.023 7.7E-07 44.9 2.9 28 73-100 18-46 (50)
28 2fc6_A Nuclear, target of EGR1 94.4 0.015 5E-07 46.0 1.8 26 128-153 19-45 (50)
29 3u1l_A PRE-mRNA-splicing facto 91.2 0.042 1.5E-06 56.0 0.3 24 74-97 69-92 (240)
30 3u1l_A PRE-mRNA-splicing facto 91.2 0.093 3.2E-06 53.5 2.8 23 130-152 71-93 (240)
31 3pgw_B SM B; protein-RNA compl 77.9 15 0.00051 37.4 11.0 18 482-499 129-146 (231)
32 3eop_A Thymocyte nuclear prote 62.8 10 0.00036 37.0 5.8 135 263-398 2-168 (176)
33 3pgw_B SM B; protein-RNA compl 62.8 12 0.00042 38.0 6.5 26 292-321 7-32 (231)
34 2eve_A Hypothetical protein ps 48.3 58 0.002 31.3 8.2 131 263-396 2-148 (157)
35 2ar1_A Hypothetical protein; s 32.0 72 0.0025 31.1 6.1 64 262-326 19-87 (172)
36 3j21_k Acidic ribosomal protei 29.0 12 0.0004 39.9 0.0 10 351-360 232-241 (339)
37 2gbs_A Hypothetical protein RP 27.9 80 0.0027 29.9 5.5 123 263-397 2-135 (145)
38 1zce_A Hypothetical protein AT 25.3 64 0.0022 30.9 4.3 64 263-327 3-72 (155)
39 3bbo_G Ribosomal protein L4; l 24.7 16 0.00053 38.5 0.0 12 175-186 109-120 (293)
40 1kp8_A Groel protein; chaperon 23.9 16 0.00056 41.1 0.0 14 293-306 235-248 (547)
41 4gyx_A Type III collagen fragm 22.8 99 0.0034 21.6 3.7 8 536-543 12-19 (31)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=8.3e-50 Score=391.36 Aligned_cols=161 Identities=40% Similarity=0.618 Sum_probs=148.3
Q ss_pred CCCCCCCCCCCCCCccEEEEEeeCChhhHHHHHHcCeeeeccccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCC
Q 005338 247 PNQTNRNATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKI 326 (701)
Q Consensus 247 ~~~~nr~~~~~p~~~aRFFIIKS~n~enI~~Sik~gVWaTt~~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~ 326 (701)
.+|||+..+.+ .++|||||||+|++||++|++|||||||++|+++|++||+++++||||||||+||+|||||+|+|++
T Consensus 13 ~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~ 90 (180)
T 2yud_A 13 KDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSES 90 (180)
T ss_dssp CCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEE
T ss_pred hhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCC
Confidence 37888877654 5789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCccccCC--CCCcCCcceeeeEEeeecCccccccccCCCCCCCccccCCCCcccChHHHHHHHHHhhcCCCch
Q 005338 327 GGSVGGGNWKYAHG--TAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLAALLYLEPDSE 404 (701)
Q Consensus 327 ~~~~~~~~W~~~~~--~~~~gg~F~VeWl~v~~LpF~~~~HL~Np~NenkPV~~sRDGQEIe~~~G~qL~~Lf~~~p~s~ 404 (701)
+.......|....+ ..+|++.|+|+||++++|||+.++||+||||+||||+++||||||++++|++||+||..+++++
T Consensus 91 ~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~ 170 (180)
T 2yud_A 91 HHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESID 170 (180)
T ss_dssp ECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSC
T ss_pred CCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCcc
Confidence 87776778975432 3579999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhh
Q 005338 405 LMAIS 409 (701)
Q Consensus 405 l~~~~ 409 (701)
+..+.
T Consensus 171 ~~~~~ 175 (180)
T 2yud_A 171 LYQVI 175 (180)
T ss_dssp SHHHH
T ss_pred HHHHH
Confidence 87665
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=372.86 Aligned_cols=137 Identities=47% Similarity=0.733 Sum_probs=130.7
Q ss_pred CCCccEEEEEeeCChhhHHHHHHcCeeeeccccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCCCCCcCCCCccc
Q 005338 258 PQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKY 337 (701)
Q Consensus 258 p~~~aRFFIIKS~n~enI~~Sik~gVWaTt~~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~~~~~~~~~W~~ 337 (701)
++.++|||||||+|++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++. .....|..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~~~W~~ 82 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGR-EKSQDWGS 82 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSS-CCCCCCSC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCC-CCCccccc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999988 56778976
Q ss_pred cCCCCCcCCcceeeeEEeeecCccccccccCCCCCCCccccCCCCcccChHHHHHHHHHhhc
Q 005338 338 AHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLAALLYL 399 (701)
Q Consensus 338 ~~~~~~~gg~F~VeWl~v~~LpF~~~~HL~Np~NenkPV~~sRDGQEIe~~~G~qL~~Lf~~ 399 (701)
.+|++.|+|+||++++|||+.++||+||||+||||+++||||||++++|++||+||..
T Consensus 83 ----~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 83 ----AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp ----SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred ----cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 4999999999999999999999999999999999999999999999999999999964
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.7e-15 Score=126.17 Aligned_cols=69 Identities=43% Similarity=1.037 Sum_probs=61.7
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcc--cCccccccCccCC
Q 005338 71 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTN--EDIKECNMYKLGF 139 (701)
Q Consensus 71 ~~~Kt~VCrfFlrG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~--~~~~iC~~F~~G~ 139 (701)
.++|++||+||++|.|++|++|+|+|+++..++++|++|...|.|.+++|+|+|.. .++.+|.+|++|.
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g~ 76 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPSS 76 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTTC
T ss_pred CCCcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccCC
Confidence 45689999999999999999999999999889999999966699998899999987 3567999999773
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.32 E-value=4.1e-13 Score=113.61 Aligned_cols=57 Identities=46% Similarity=1.130 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcc
Q 005338 70 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTN 126 (701)
Q Consensus 70 ~~~~Kt~VCrfFlrG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~ 126 (701)
..+.+++||+||++|.|++|++|+|+|+++..++++|++|...|.|.+++|+|+|+.
T Consensus 11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~y~H~~ 67 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHID 67 (72)
T ss_dssp SSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSBTTCCSBCCC
T ss_pred CCCCcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCCCCeeccCCC
Confidence 355688999999999999999999999987766666666633355555445555543
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.18 E-value=1.5e-11 Score=109.83 Aligned_cols=77 Identities=22% Similarity=0.564 Sum_probs=58.5
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCc-cCCCCC
Q 005338 64 VPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYK-LGFCPN 142 (701)
Q Consensus 64 f~H~r~~~~~Kt~VCrfFlrG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~-~G~C~~ 142 (701)
++|.... .+|+++|+||++|.|++|++|+|+|+ ..+|++|+ .|.|++
T Consensus 3 ~sH~~~~-~~k~~lC~~f~~G~C~~G~~C~f~H~-------------------------------~~~C~~f~~~G~C~~ 50 (98)
T 2cqe_A 3 SGSSGEL-PKKRELCKFYITGFCARAENCPYMHG-------------------------------DFPCKLYHTTGNCIN 50 (98)
T ss_dssp CCCCCCC-SCCCSBCTTTTTTCCSCSTTCSSBSS-------------------------------SSBCSHHHHTSCCSS
T ss_pred ccccCCC-CCCCccCcccccCcCCCCCCCCCCCC-------------------------------CCcCcCcccCCcCCC
Confidence 5676543 35899999999999999999999996 13788884 999999
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHhhhhccccCC
Q 005338 143 GPDCRYRHVKLPGPPPSVEEVLQKIQQISSYNH 175 (701)
Q Consensus 143 G~~Crf~H~~~p~~~p~v~e~lqki~~l~s~~y 175 (701)
|++|+|.|.... ....+++.+++....++-
T Consensus 51 G~~C~f~H~~~~---~~~~~~l~~~l~~~~~~~ 80 (98)
T 2cqe_A 51 GDDCMFSHDPLT---EETRELLDKMLADDAEAG 80 (98)
T ss_dssp CTTCSSBCCCCC---HHHHHHHHHHHHHHHHSC
T ss_pred CCCCcccCCCCc---ccchhHHhhhcchhhhhc
Confidence 999999998653 234456666665555543
No 6
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.14 E-value=1.6e-11 Score=103.72 Aligned_cols=67 Identities=24% Similarity=0.617 Sum_probs=28.4
Q ss_pred CCCcccccccccc-cCCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccC-ccCCCCCCCCCC
Q 005338 70 RRSFRQTVCRHWL-RSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMY-KLGFCPNGPDCR 147 (701)
Q Consensus 70 ~~~~Kt~VCrfFl-rG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F-~~G~C~~G~~Cr 147 (701)
...+|+++|++|+ .|.|++|++|+|+|+....+.. ..|...++.+|++| +.|.|++|.+|+
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~-----------------~~~~~~k~~~C~~f~~~G~C~~G~~C~ 69 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA-----------------NRHPKYKTELCHKFKLQGRCPYGSRCH 69 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT-----------------C--------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc-----------------cccccccCCcccchhhCcCCCCcCcCC
Confidence 3567999999996 7999999999999987643321 12444456799865 499999999999
Q ss_pred CCCCCC
Q 005338 148 YRHVKL 153 (701)
Q Consensus 148 f~H~~~ 153 (701)
|+|...
T Consensus 70 f~H~~~ 75 (77)
T 1m9o_A 70 FIHNPT 75 (77)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999753
No 7
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.06 E-value=3.6e-11 Score=100.94 Aligned_cols=61 Identities=30% Similarity=0.685 Sum_probs=44.0
Q ss_pred CcccccccccccCCCCCCC-CCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCccCCCCCCCCCCCCC
Q 005338 72 SFRQTVCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRH 150 (701)
Q Consensus 72 ~~Kt~VCrfFlrG~C~kGd-~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~~G~C~~G~~Crf~H 150 (701)
+.+..||++|++|.|.+|+ .|+|+|+...... .....++.+|++|++|.|.+| +|+|.|
T Consensus 3 ~~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~-------------------~~~~~~~~vC~~flkG~C~r~-~C~y~H 62 (70)
T 3d2q_A 3 TDRLEVCREYQRGNCNRGENDCRFAHPADSTMI-------------------DTNDNTVTVCMDYIKGRCSRE-KCKYFH 62 (70)
T ss_dssp -CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCC-------------------BTTTTEEEBCHHHHTTCCCCT-TCCSBC
T ss_pred cccchhCHHHhcCCCCCCCCCCCCccCcccccc-------------------cccCCcceeccccCcCCCCCC-CcCeeC
Confidence 4578999999999999999 5999997653211 011234567888888888887 888888
Q ss_pred CC
Q 005338 151 VK 152 (701)
Q Consensus 151 ~~ 152 (701)
..
T Consensus 63 ~~ 64 (70)
T 3d2q_A 63 PP 64 (70)
T ss_dssp CC
T ss_pred CH
Confidence 64
No 8
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.9e-11 Score=107.22 Aligned_cols=62 Identities=29% Similarity=0.678 Sum_probs=47.7
Q ss_pred CCcccccccccccCCCCCCC-CCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCccCCCCCCCCCCCC
Q 005338 71 RSFRQTVCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYR 149 (701)
Q Consensus 71 ~~~Kt~VCrfFlrG~C~kGd-~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~~G~C~~G~~Crf~ 149 (701)
.+.|.+||++|++|.|.+|+ .|+|+|+.+..... -...+..+|.+|++|.|.++ +|+|.
T Consensus 16 ~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~-------------------~~~~~~~vC~~flkG~C~r~-~C~y~ 75 (98)
T 2e5s_A 16 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMID-------------------TSDNTVTVCMDYIKGRCMRE-KCKYF 75 (98)
T ss_dssp CSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCC-------------------TTTCEEEBCHHHHHTCCCCT-TCCSB
T ss_pred ChhhhhhhHHHhcCcCCCCCCCCCCcCCchhcccc-------------------ccCCccccchhhccCCCCCC-CcCcc
Confidence 44578999999999999998 79999987532110 01234568999999999997 89999
Q ss_pred CCC
Q 005338 150 HVK 152 (701)
Q Consensus 150 H~~ 152 (701)
|+.
T Consensus 76 H~~ 78 (98)
T 2e5s_A 76 HPP 78 (98)
T ss_dssp CCC
T ss_pred CCh
Confidence 965
No 9
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.01 E-value=8.8e-11 Score=102.06 Aligned_cols=62 Identities=26% Similarity=0.563 Sum_probs=47.3
Q ss_pred CCCCcccccccccccCCCCCCC-CCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCccCCCCCCCCCC
Q 005338 69 GRRSFRQTVCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCR 147 (701)
Q Consensus 69 ~~~~~Kt~VCrfFlrG~C~kGd-~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~~G~C~~G~~Cr 147 (701)
..+|.+..||++|++|.|.++| .|+|+|...... ....+..+|.+|++|.|.++ .|+
T Consensus 3 ~~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~---------------------~~~~~~~vC~dflkG~C~r~-~C~ 60 (83)
T 3d2n_A 3 DTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQ---------------------VENGRVIACFDSLKGRCSRE-NCK 60 (83)
T ss_dssp -CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCC---------------------EETTEEECCHHHHTTCCCCS-SCS
T ss_pred CcccccchhcHHHhcCCCCCCCCCCCCcCCCcccc---------------------ccCCceeehhHhhhccccCC-Ccc
Confidence 4578899999999999999997 999999865210 01223568888888888886 888
Q ss_pred CCCCC
Q 005338 148 YRHVK 152 (701)
Q Consensus 148 f~H~~ 152 (701)
|.|..
T Consensus 61 y~H~~ 65 (83)
T 3d2n_A 61 YLHPP 65 (83)
T ss_dssp SCCCC
T ss_pred eeCCh
Confidence 88864
No 10
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-10 Score=102.05 Aligned_cols=68 Identities=28% Similarity=0.609 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCcccccccccccCCCCCCC-CCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCccC
Q 005338 60 ASAPVPHHSGRRSFRQTVCRHWLRSLCMKGD-ACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLG 138 (701)
Q Consensus 60 ~sC~f~H~r~~~~~Kt~VCrfFlrG~C~kGd-~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~~G 138 (701)
..+.+++ .++.+..||++|++|.|.+++ .|+|+|....... ...+..+|.+|++|
T Consensus 5 ~~~~~~~---~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v---------------------~~~~~~vC~dflkG 60 (89)
T 2rpp_A 5 SSGPVRD---TKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQV---------------------ENGRVIACFDSLKG 60 (89)
T ss_dssp CCSCCCS---CSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCC---------------------BTTBEEBCHHHHHT
T ss_pred ccccccC---CCcchhhhchHHhcCCCCCCCCCCCCcCCCccccc---------------------cCCceeeehhhhhC
Confidence 3444444 466788999999999999998 9999998653110 01234577777777
Q ss_pred CCCCCCCCCCCCCC
Q 005338 139 FCPNGPDCRYRHVK 152 (701)
Q Consensus 139 ~C~~G~~Crf~H~~ 152 (701)
.|.++ .|+|.|..
T Consensus 61 ~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 61 RCSRE-NCKYLHPP 73 (89)
T ss_dssp CCCCT-TCCSBCCC
T ss_pred cCCCC-CcceecCH
Confidence 77774 77777753
No 11
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.3e-10 Score=95.41 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=57.2
Q ss_pred hHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc-CCCCCCCCCCCCCCCCCCCCccccccc
Q 005338 35 TAAAAAAAANANHAAPSSSGAAPDHASAPVPHHSGRRSFRQTVCRHWLR-SLCMKGDACGFLHQYDKSRMPVCRFFR 110 (701)
Q Consensus 35 s~aa~C~ff~ass~a~t~sg~C~~G~sC~f~H~r~~~~~Kt~VCrfFlr-G~C~kGd~C~FaH~~~~~r~p~C~~F~ 110 (701)
...++|+||. .|.|.+|+.|.|+|+... .++.+|+||++ |.|. ++.|+|+|.....+.++|.+|.
T Consensus 8 ~k~~~C~~fl--------~G~C~~G~~C~fsH~~~~--~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~C~~f~ 73 (77)
T 2d9n_A 8 EKTVVCKHWL--------RGLCKKGDQCEFLHEYDM--TKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWSG 73 (77)
T ss_dssp CTTSBCHHHH--------TTCCSCTTSSSSBCSCCT--TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSSSSCCT
T ss_pred CcceeCHhHc--------cCcCCCCCCCCCcccccc--CcCCCCcccCCCCccC-CCCeeccCCCccccCCCCcccc
Confidence 3457899999 688999999999998754 46789999999 9999 7999999998888899999994
No 12
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.57 E-value=1.9e-08 Score=85.04 Aligned_cols=53 Identities=28% Similarity=0.782 Sum_probs=45.6
Q ss_pred CCCCcccccccccCccCC-CCCCCCCcc--cCccccccCcc-CCCCCCCCCCCCCCCCC
Q 005338 100 KSRMPVCRFFRLFGECRE-QDCVYKHTN--EDIKECNMYKL-GFCPNGPDCRYRHVKLP 154 (701)
Q Consensus 100 ~~r~p~C~~F~~~G~C~~-~dC~FsH~~--~~~~iC~~F~~-G~C~~G~~Crf~H~~~p 154 (701)
..+..+|++| +.|.|.+ ++|.|+|.. .+.++|++|++ |.|.+ ++|+|.|+..+
T Consensus 13 ~~k~~vCk~f-l~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 13 GEKTVVCKHW-LRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCCSBCHHH-HTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcCeeCHHH-hcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 4567799999 6699999 579999986 35679999998 99999 99999998764
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.52 E-value=2e-08 Score=84.26 Aligned_cols=25 Identities=36% Similarity=0.911 Sum_probs=21.1
Q ss_pred CccccccCccCCCCCCC-CCCCCCCC
Q 005338 128 DIKECNMYKLGFCPNGP-DCRYRHVK 152 (701)
Q Consensus 128 ~~~iC~~F~~G~C~~G~-~Crf~H~~ 152 (701)
+..+|++|++|.|.+|+ .|+|+|..
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCc
Confidence 35689999999999998 59999965
No 14
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.50 E-value=2.1e-08 Score=101.06 Aligned_cols=91 Identities=22% Similarity=0.456 Sum_probs=68.1
Q ss_pred ccccccccCCCC----CCCCCCCCCCCCCC------------------------------CCcccccccc----cCccCC
Q 005338 76 TVCRHWLRSLCM----KGDACGFLHQYDKS------------------------------RMPVCRFFRL----FGECRE 117 (701)
Q Consensus 76 ~VCrfFlrG~C~----kGd~C~FaH~~~~~------------------------------r~p~C~~F~~----~G~C~~ 117 (701)
=+||+|+.|.|. .+..|+|+|++... --.+|.+| + .|.|+.
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 489999999993 34789999985321 12389999 5 368999
Q ss_pred -CCCCCCCcccCccccccCccCCCCCCCCCCCCCCCCCCCC-C------ChHHHHHhhhhccccC
Q 005338 118 -QDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPP-P------SVEEVLQKIQQISSYN 174 (701)
Q Consensus 118 -~dC~FsH~~~~~~iC~~F~~G~C~~G~~Crf~H~~~p~~~-p------~v~e~lqki~~l~s~~ 174 (701)
..|..+| +|.+|++|.|++ ..|+..|....... . -..+++.+|+.+|.++
T Consensus 169 ~~~C~kLH------IC~~Fl~G~C~f-~~CkRsH~~~~~~~l~~L~~~Gls~~~i~nl~~iy~~~ 226 (229)
T 3u9g_A 169 PQPCERLH------ICEHFTRGNCSY-LNCLRSHNLMDRKVLTIMREHGLSPDVVQNIQDICNNK 226 (229)
T ss_dssp SSCCCSBC------SCHHHHTTCCCC-SSCSSCCCTTSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccee------ccchhhcCCcCC-CCccCccCccCchHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6899999 899999999999 89999999853210 0 1134566777776654
No 15
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.37 E-value=6.5e-08 Score=86.29 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=47.9
Q ss_pred hHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc-cCCCCCCCCCCCCCCCCCCCCcccc
Q 005338 35 TAAAAAAAANANHAAPSSSGAAPDHASAPVPHHSGRRSFRQTVCRHWL-RSLCMKGDACGFLHQYDKSRMPVCR 107 (701)
Q Consensus 35 s~aa~C~ff~ass~a~t~sg~C~~G~sC~f~H~r~~~~~Kt~VCrfFl-rG~C~kGd~C~FaH~~~~~r~p~C~ 107 (701)
....+|+||. .|.|..|+.|.|.|+ +.+|++|+ .|.|.+|+.|+|+|......++.|.
T Consensus 11 ~k~~lC~~f~--------~G~C~~G~~C~f~H~-------~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l 69 (98)
T 2cqe_A 11 KKRELCKFYI--------TGFCARAENCPYMHG-------DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELL 69 (98)
T ss_dssp CCCSBCTTTT--------TTCCSCSTTCSSBSS-------SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHH
T ss_pred CCCccCcccc--------cCcCCCCCCCCCCCC-------CCcCcCcccCCcCCCCCCCcccCCCCcccchhHH
Confidence 3567899998 688999999999996 68999995 8999999999999986544444443
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.36 E-value=1.3e-07 Score=82.12 Aligned_cols=26 Identities=19% Similarity=0.695 Sum_probs=22.0
Q ss_pred CccccccCccCCCCCCC-CCCCCCCCC
Q 005338 128 DIKECNMYKLGFCPNGP-DCRYRHVKL 153 (701)
Q Consensus 128 ~~~iC~~F~~G~C~~G~-~Crf~H~~~ 153 (701)
+..+|++|++|.|.+|+ .|+|+|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 35689999999999996 999999864
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6.8e-08 Score=86.29 Aligned_cols=66 Identities=14% Similarity=0.318 Sum_probs=54.5
Q ss_pred CCCCCCCCchhHHHHhhhhhhcCCCCCCCCCCCCCC-CCCCCCCCCC-----CCcccccccccccCCCCCCCCCCCCCCC
Q 005338 25 ASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHA-SAPVPHHSGR-----RSFRQTVCRHWLRSLCMKGDACGFLHQY 98 (701)
Q Consensus 25 as~P~~~~dks~aa~C~ff~ass~a~t~sg~C~~G~-sC~f~H~r~~-----~~~Kt~VCrfFlrG~C~kGd~C~FaH~~ 98 (701)
++.+....+.....+|++|. .|.|..++ .|+|.|.... ...++.+|++|++|.|.++ .|+|+|..
T Consensus 8 ~~~~~K~~~~~k~~VCr~Fl--------rG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 8 STATQKLLRTDKLEVCREFQ--------RGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPP 78 (98)
T ss_dssp SSCCCCCCCSSEEEBCSHHH--------HTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCC
T ss_pred ccccccccChhhhhhhHHHh--------cCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCCh
Confidence 44667777777788999999 68899999 7999998753 2357889999999999998 89999964
Q ss_pred C
Q 005338 99 D 99 (701)
Q Consensus 99 ~ 99 (701)
.
T Consensus 79 ~ 79 (98)
T 2e5s_A 79 A 79 (98)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.23 E-value=3.2e-07 Score=80.72 Aligned_cols=36 Identities=17% Similarity=0.520 Sum_probs=28.0
Q ss_pred CCCCCCcc-cCccccccCccCCCCCCC-CCCCCCCCCC
Q 005338 119 DCVYKHTN-EDIKECNMYKLGFCPNGP-DCRYRHVKLP 154 (701)
Q Consensus 119 dC~FsH~~-~~~~iC~~F~~G~C~~G~-~Crf~H~~~p 154 (701)
.+++.++. .+..+|++|++|.|.+|+ .|+|+|....
T Consensus 6 ~~~~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 6 SGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp CSCCCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred cccccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 35566655 346799999999999997 9999998653
No 19
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.21 E-value=2.5e-07 Score=77.89 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=24.2
Q ss_pred hhHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC-------Ccccccccccc-cCCCCCCCCCCCCCCCC
Q 005338 34 STAAAAAAAANANHAAPSSSGAAPDHASAPVPHHSGRR-------SFRQTVCRHWL-RSLCMKGDACGFLHQYD 99 (701)
Q Consensus 34 ks~aa~C~ff~ass~a~t~sg~C~~G~sC~f~H~r~~~-------~~Kt~VCrfFl-rG~C~kGd~C~FaH~~~ 99 (701)
+....+|.+|. .++.|..|+.|.|.|+.... .+++.+|++|. .|.|.+|+.|+|+|...
T Consensus 9 ~~kt~~C~~f~-------~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYS-------ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGG-------GTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred CccchhCHHhh-------hCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 44568899885 15789999999999987532 25688998554 79999999999999754
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.19 E-value=1.1e-06 Score=75.88 Aligned_cols=66 Identities=24% Similarity=0.544 Sum_probs=53.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcccCccccccCccCCCCCCCCCCCCCCCC
Q 005338 74 RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHVKL 153 (701)
Q Consensus 74 Kt~VCrfFlrG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~~~~~iC~~F~~G~C~~G~~Crf~H~~~ 153 (701)
-.++||||. .|++ +.|.|.|... ...|+++ ..|++.+|.|.|.. .+.|+|+.. |.+ ..|.|.|...
T Consensus 8 ~~e~CKf~~--~Ctn-~~C~f~Hp~~---~~~Cr~g---~~C~~~~C~f~HP~--~~~Crf~~~--C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 8 SLEQCKFGT--HCTN-KRCKYRHARS---HIMCREG---ANCTRIDCLFGHPI--NEDCRFGVN--CKN-IYCLFRHPPG 73 (80)
Confidence 357899996 5999 8899999632 3479988 79999999999963 247999874 999 8999999653
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.17 E-value=0.00034 Score=70.74 Aligned_cols=70 Identities=20% Similarity=0.472 Sum_probs=57.5
Q ss_pred HhhhhhhcCCCCCCCCCC----CCCCCCCCCCCCCCC----------------------------Cccccccccccc---
Q 005338 39 AAAAANANHAAPSSSGAA----PDHASAPVPHHSGRR----------------------------SFRQTVCRHWLR--- 83 (701)
Q Consensus 39 ~C~ff~ass~a~t~sg~C----~~G~sC~f~H~r~~~----------------------------~~Kt~VCrfFlr--- 83 (701)
+|++|. .|.| ..+..|.|+|+.... +.-.+||.+| +
T Consensus 91 LCK~~l--------~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g 161 (229)
T 3u9g_A 91 LCKLNL--------LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEG 161 (229)
T ss_dssp CCHHHH--------TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSS
T ss_pred echhhh--------cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCC
Confidence 688888 6789 356889999987431 1124689999 7
Q ss_pred --CCCCCCCCCCCCCCCCCCCCcccccccccCccCCCCCCCCCcc
Q 005338 84 --SLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKHTN 126 (701)
Q Consensus 84 --G~C~kGd~C~FaH~~~~~r~p~C~~F~~~G~C~~~dC~FsH~~ 126 (701)
|.|+..+.|..+| +|.+| +.|.|+...|+-+|.-
T Consensus 162 ~~g~C~~~~~C~kLH--------IC~~F-l~G~C~f~~CkRsH~~ 197 (229)
T 3u9g_A 162 RKQTCGQPQPCERLH--------ICEHF-TRGNCSYLNCLRSHNL 197 (229)
T ss_dssp SCCSCSSSSCCCSBC--------SCHHH-HTTCCCCSSCSSCCCT
T ss_pred CCCcCCCCCCCccee--------ccchh-hcCCcCCCCccCccCc
Confidence 5899999999999 69999 8999999999999976
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.21 E-value=6.8e-05 Score=64.81 Aligned_cols=68 Identities=19% Similarity=0.411 Sum_probs=54.1
Q ss_pred hhHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccC
Q 005338 34 STAAAAAAAANANHAAPSSSGAAPDHASAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFG 113 (701)
Q Consensus 34 ks~aa~C~ff~ass~a~t~sg~C~~G~sC~f~H~r~~~~~Kt~VCrfFlrG~C~kGd~C~FaH~~~~~r~p~C~~F~~~G 113 (701)
......|+|+. .|+. ..|+|.|.. ...+|+|+. .|++ ..|.|+|.. ...|+|+ .
T Consensus 6 ~~~~e~CKf~~----------~Ctn-~~C~f~Hp~-----~~~~Cr~g~--~C~~-~~C~f~HP~----~~~Crf~---~ 59 (80)
T 2lhn_A 6 EKSLEQCKFGT----------HCTN-KRCKYRHAR-----SHIMCREGA--NCTR-IDCLFGHPI----NEDCRFG---V 59 (80)
Confidence 34567899988 5888 899999954 246899994 6998 679999962 2469888 6
Q ss_pred ccCCCCCCCCCccc
Q 005338 114 ECREQDCVYKHTNE 127 (701)
Q Consensus 114 ~C~~~dC~FsH~~~ 127 (701)
.|++.+|.|.|...
T Consensus 60 ~C~n~~C~F~Hp~g 73 (80)
T 2lhn_A 60 NCKNIYCLFRHPPG 73 (80)
Confidence 89999999999653
No 23
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.62 E-value=0.014 Score=55.21 Aligned_cols=130 Identities=19% Similarity=0.293 Sum_probs=81.5
Q ss_pred EEEEEeeCChhhHHHHHHcCeeeeccccHHHHHHHhccCCcEEEEEEeCCC--------CceeEEEEeccCCCCCcCCCC
Q 005338 263 RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRT--------RHFQGCAKMTSKIGGSVGGGN 334 (701)
Q Consensus 263 RFFIIKS~n~enI~~Sik~gVWaTt~~ne~kLn~AF~~~~~V~LfFSVN~S--------g~FqG~ArM~S~~~~~~~~~~ 334 (701)
+|.|+|| +.+++...++.|+|-. .+..+..-++-+. ...+|||+-+.. ..|.|+|++++.+-...+ ..
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~mk~-GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t-~~ 77 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRVKP-GDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFS-RI 77 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCCT-TCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCC-CC
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhCCC-CCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCC-cc
Confidence 5999999 8899999999999977 5444444444344 467777876654 799999999986533322 22
Q ss_pred ccccCC-CCCcCCcceeeeEEeeecCcccccc----ccCCCCCCCccccCCCCcccChHHHHHHHHHh
Q 005338 335 WKYAHG-TAHYGRNFSVKWLKLCELSFHKTRH----LRNPYNENLPVKISRDCQELEPSIGEQLAALL 397 (701)
Q Consensus 335 W~~~~~-~~~~gg~F~VeWl~v~~LpF~~~~H----L~Np~NenkPV~~sRDGQEIe~~~G~qL~~Lf 397 (701)
|..... ...+--...|+++.+..|++..+.. |+|.-+=...+ .-+--++|+.+..+.||+.|
T Consensus 78 ~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 78 FKPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp SCCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221100 0122234568888888888876654 22211111222 02337999999999988765
No 24
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=55.44 Aligned_cols=29 Identities=21% Similarity=0.638 Sum_probs=25.2
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCC
Q 005338 72 SFRQTVCRHWLRSLCMKGDACGFLHQYDK 100 (701)
Q Consensus 72 ~~Kt~VCrfFlrG~C~kGd~C~FaH~~~~ 100 (701)
..+..||+.|..|.|.+|++|.|+|...+
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHH
Confidence 34679999999999999999999998543
No 25
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=95.51 E-value=0.029 Score=53.12 Aligned_cols=128 Identities=9% Similarity=0.202 Sum_probs=80.2
Q ss_pred cEEEEEeeCChhhHHHHHHcCeeeeccccHHHHHHHhccCCcEEEEEEeC------CCCceeEEEEeccCCCCCcCCCCc
Q 005338 262 SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVN------RTRHFQGCAKMTSKIGGSVGGGNW 335 (701)
Q Consensus 262 aRFFIIKS~n~enI~~Sik~gVWaTt~~ne~kLn~AF~~~~~V~LfFSVN------~Sg~FqG~ArM~S~~~~~~~~~~W 335 (701)
.+|.|+||.- +++...++.|+|-. .+..+.+-++-+.. ..+|||.+. .-..|.|+|++++..-... +..|
T Consensus 4 m~YWL~~se~-~~~~~~~~~g~wGV-n~~arn~lr~Mk~G-D~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~-t~~d 79 (147)
T 2p5d_A 4 MAYWLCITNE-DNWKVIKEKKIWGV-AERYKNTINKVKVG-DKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS-SKIF 79 (147)
T ss_dssp CCEEEEEECH-HHHHHHHHHCEEEE-CGGGHHHHTTCCTT-CEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC-CCCS
T ss_pred ccceeeecCH-HHHHHHHHcCeeec-CHHHHHHHHhCCCC-CEEEEEEecccCCCCCCCEEEEEEEEecccccCC-cccC
Confidence 3699999865 67999999999976 44444444444444 555666332 3458999999998643322 2233
Q ss_pred cccC--CCCCcCCcceeeeEEe--eecCcccccc----ccC--CCCCCCccccCCCCcccChHHHHHHHHH
Q 005338 336 KYAH--GTAHYGRNFSVKWLKL--CELSFHKTRH----LRN--PYNENLPVKISRDCQELEPSIGEQLAAL 396 (701)
Q Consensus 336 ~~~~--~~~~~gg~F~VeWl~v--~~LpF~~~~H----L~N--p~NenkPV~~sRDGQEIe~~~G~qL~~L 396 (701)
.... .....--..+|+|+.. ..|++..++. |++ .|.+ .-|+.+ -++|+.+.-+.||+|
T Consensus 80 p~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 80 KPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred cCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 2210 0112234778999988 8888887772 222 2223 224566 899999988888753
No 26
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.45 E-value=0.005 Score=51.85 Aligned_cols=32 Identities=25% Similarity=0.651 Sum_probs=26.0
Q ss_pred CCCCcccCccccccCccCCCCCCCCCCCCCCC
Q 005338 121 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHVK 152 (701)
Q Consensus 121 ~FsH~~~~~~iC~~F~~G~C~~G~~Crf~H~~ 152 (701)
.|.+...+..+|..|..|.|++|++|.|+|..
T Consensus 12 ~~R~P~~k~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 12 QHRFPTGYFSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCCCCCSCCSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred cccCCCCCcccCcccCcCCCCCCCccCCcCCH
Confidence 34444445579999999999999999999975
No 27
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.45 E-value=0.023 Score=44.91 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=24.3
Q ss_pred ccccccccccc-CCCCCCCCCCCCCCCCC
Q 005338 73 FRQTVCRHWLR-SLCMKGDACGFLHQYDK 100 (701)
Q Consensus 73 ~Kt~VCrfFlr-G~C~kGd~C~FaH~~~~ 100 (701)
.++.||+-|.. |.|.+|.+|+++|+.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 47889998877 99999999999998763
No 28
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.38 E-value=0.015 Score=45.96 Aligned_cols=26 Identities=31% Similarity=0.792 Sum_probs=22.0
Q ss_pred CccccccCc-cCCCCCCCCCCCCCCCC
Q 005338 128 DIKECNMYK-LGFCPNGPDCRYRHVKL 153 (701)
Q Consensus 128 ~~~iC~~F~-~G~C~~G~~Crf~H~~~ 153 (701)
.+.+|..|. .|+|++|..|+++|..-
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 456899887 99999999999999763
No 29
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.22 E-value=0.042 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.782 Sum_probs=21.7
Q ss_pred ccccccccccCCCCCCCCCCCCCC
Q 005338 74 RQTVCRHWLRSLCMKGDACGFLHQ 97 (701)
Q Consensus 74 Kt~VCrfFlrG~C~kGd~C~FaH~ 97 (701)
+.-+|-||.+|.|.+|++|.|+|.
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBS
T ss_pred CCeEcCccccCCCCCCCCCCccCC
Confidence 345999999999999999999995
No 30
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.19 E-value=0.093 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=21.4
Q ss_pred cccccCccCCCCCCCCCCCCCCC
Q 005338 130 KECNMYKLGFCPNGPDCRYRHVK 152 (701)
Q Consensus 130 ~iC~~F~~G~C~~G~~Crf~H~~ 152 (701)
.+|.||.+|.|.+|..|+|.|..
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred eEcCccccCCCCCCCCCCccCCC
Confidence 49999999999999999999975
No 31
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=77.88 E-value=15 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCcccCCCC
Q 005338 482 RPVPGMRGFPPMMIGADG 499 (701)
Q Consensus 482 ~p~~g~~~~~~~~~~~~~ 499 (701)
-|+-|..+-.+.+|.|.|
T Consensus 129 gp~~g~g~p~~~~~~p~~ 146 (231)
T 3pgw_B 129 GPVRGVGGPSQQVMTPQG 146 (231)
T ss_pred cccccccCCCcccccCCC
Confidence 345666665566665444
No 32
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=62.79 E-value=10 Score=37.05 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=81.4
Q ss_pred EEEEEee-------------CChhhHHHH-HHcCeeee-ccccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCCC
Q 005338 263 RYFIVKS-------------CNRENLELS-VQQGVWAT-QRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIG 327 (701)
Q Consensus 263 RFFIIKS-------------~n~enI~~S-ik~gVWaT-t~~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~~ 327 (701)
+|.|+|| |+.+++..+ .+...|.= .....+.+-++-+..+.|++.-|..+.-...|+|++++..-
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~y 81 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 81 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeeccc
Confidence 5888886 566777665 34567883 33334445556666666666667768899999999987532
Q ss_pred CC-----cCCCCcccc--CCCCCcCCcceeeeEEe--eecCcccccccc-------CCCCCCCccccCC-CCcccChHHH
Q 005338 328 GS-----VGGGNWKYA--HGTAHYGRNFSVKWLKL--CELSFHKTRHLR-------NPYNENLPVKISR-DCQELEPSIG 390 (701)
Q Consensus 328 ~~-----~~~~~W~~~--~~~~~~gg~F~VeWl~v--~~LpF~~~~HL~-------Np~NenkPV~~sR-DGQEIe~~~G 390 (701)
.. ..+.+|.-- ....+| ..+.|+-++. ..|+...++... -.|.+..-|+.+| --|-|..+.-
T Consensus 82 pD~T~fDp~s~YyDpkS~~~~prW-~~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew 160 (176)
T 3eop_A 82 PDHTQFEKNNPHYDPSSKEDNPKW-SMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176)
T ss_dssp ECGGGTCTTSTTCCTTCCTTSCSC-EEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred cCCcccCCCCCCCCccCcCCCCCE-EEEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHH
Confidence 11 122333211 112244 3466777665 346666666653 2555655566665 3467788888
Q ss_pred HHHHHHhh
Q 005338 391 EQLAALLY 398 (701)
Q Consensus 391 ~qL~~Lf~ 398 (701)
..||.|-.
T Consensus 161 ~~I~~l~~ 168 (176)
T 3eop_A 161 DFVLSLEE 168 (176)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 88887754
No 33
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=62.77 E-value=12 Score=37.97 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=12.3
Q ss_pred HHHHHHhccCCcEEEEEEeCCCCceeEEEE
Q 005338 292 AKLNEAFDSAENVILIFSVNRTRHFQGCAK 321 (701)
Q Consensus 292 ~kLn~AF~~~~~V~LfFSVN~Sg~FqG~Ar 321 (701)
.+|.+...+ .|.+.+ ++...|.|.=+
T Consensus 7 ~kL~klIdK--rV~V~L--kdGRel~GtLk 32 (231)
T 3pgw_B 7 SKMLQHIDY--RMRCIL--QDGRIFIGTFK 32 (231)
T ss_pred HHHHHhcCC--eEEEEE--CCCcEEEEEEE
Confidence 345443333 444443 45566666543
No 34
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=48.25 E-value=58 Score=31.33 Aligned_cols=131 Identities=11% Similarity=0.158 Sum_probs=75.0
Q ss_pred EEEEEee----CChhhHHHHHHcCeeeec-cccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCCCCCc-----CC
Q 005338 263 RYFIVKS----CNRENLELSVQQGVWATQ-RSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGGSV-----GG 332 (701)
Q Consensus 263 RFFIIKS----~n~enI~~Sik~gVWaTt-~~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~~~~~-----~~ 332 (701)
+|.|+|| ++.+++.. ....+|.-. ....+.+-++-+..+.|++.-|........|+|++++...... .+
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~s 80 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDS 80 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTTS
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCcccccccC
Confidence 4889998 47777777 455789733 3333455556666666655556668999999999987532211 12
Q ss_pred CCcccc--CCCCCcCCcceeeeEEe--eecCccccccccCCCCCCCcccc-CC-CCcccChHHHHHHHHH
Q 005338 333 GNWKYA--HGTAHYGRNFSVKWLKL--CELSFHKTRHLRNPYNENLPVKI-SR-DCQELEPSIGEQLAAL 396 (701)
Q Consensus 333 ~~W~~~--~~~~~~gg~F~VeWl~v--~~LpF~~~~HL~Np~NenkPV~~-sR-DGQEIe~~~G~qL~~L 396 (701)
..|.-- ....+| ..+.|+-+.. ..|+...++... .|.+..-|+. +| --|-|..+.-..||+|
T Consensus 81 ~YyDpks~~~~prw-~~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l 148 (157)
T 2eve_A 81 HYHDAKATTEKNPW-SALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILAL 148 (157)
T ss_dssp TTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred cCcCcccCCCCCCE-EEEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHH
Confidence 333210 011223 2444555543 455555555542 3444444555 23 3477888888888776
No 35
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=31.95 E-value=72 Score=31.06 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=44.9
Q ss_pred cEEEEEeeC----ChhhHHHHHHcCeeeecc-ccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCC
Q 005338 262 SRYFIVKSC----NRENLELSVQQGVWATQR-SNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKI 326 (701)
Q Consensus 262 aRFFIIKS~----n~enI~~Sik~gVWaTt~-~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~ 326 (701)
-+|.|+||- +.+++.. .....|.-.+ ...+.+-++-+..+.|+|.-|......+.|+|++++..
T Consensus 19 M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ 87 (172)
T 2ar1_A 19 IHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLA 87 (172)
T ss_dssp CCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEE
T ss_pred cceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeec
Confidence 479999985 6777776 4446797333 33344555667766666666766899999999998753
No 36
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.97 E-value=12 Score=39.93 Aligned_cols=10 Identities=0% Similarity=-0.084 Sum_probs=0.0
Q ss_pred eeEEeeecCc
Q 005338 351 KWLKLCELSF 360 (701)
Q Consensus 351 eWl~v~~LpF 360 (701)
-|.....+|.
T Consensus 232 ~ypT~~svp~ 241 (339)
T 3j21_k 232 AYPTPQTIEA 241 (339)
T ss_dssp ----------
T ss_pred CCCCHHHHHH
Confidence 3444444443
No 37
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=27.91 E-value=80 Score=29.93 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=65.0
Q ss_pred EEEEEeeC----ChhhHHHHHH-cCeeeecc-ccHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCC--CCCcCCCC
Q 005338 263 RYFIVKSC----NRENLELSVQ-QGVWATQR-SNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKI--GGSVGGGN 334 (701)
Q Consensus 263 RFFIIKS~----n~enI~~Sik-~gVWaTt~-~ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~--~~~~~~~~ 334 (701)
+|.++||- +.+++...-. .-.|.-.+ ..-+.+-++-+..+.|+|.-| |....+.|+|++++.. |.......
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqArn~mr~Mk~GD~~ffYHS-~~~~gIvGi~eVv~e~ypD~t~~~pr 80 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHS-NEGKEIVGIAEIIREAYPDPTDASGK 80 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHHHHHHHCCTTCEEEEEET-TTTCEEEEEEEEEEEEEECTTCTTSC
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHHHHHHhcCCCCEEEEEEe-CCCCceEEEEEEEEeccCCCCCCCCC
Confidence 48999985 5566665332 13497333 223444456566555554445 5899999999999864 32222222
Q ss_pred ccccCCCCCcCCcceeeeEEe--eecCccccccccCCCCCCCccccCC-CCcccChHHHHHHHHHh
Q 005338 335 WKYAHGTAHYGRNFSVKWLKL--CELSFHKTRHLRNPYNENLPVKISR-DCQELEPSIGEQLAALL 397 (701)
Q Consensus 335 W~~~~~~~~~gg~F~VeWl~v--~~LpF~~~~HL~Np~NenkPV~~sR-DGQEIe~~~G~qL~~Lf 397 (701)
|. .+.|+-+.. ..|+...++.. -.|.+..-|+.+| --|-|..+.-..||.|-
T Consensus 81 w~----------~VdV~~v~~~~~pvtL~elK~~-~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~ 135 (145)
T 2gbs_A 81 FV----------CVDIKADKPLKTPVTLAAVKAE-PRLADMALMKYSRLSVQPVTAEEWKLVCKMG 135 (145)
T ss_dssp SE----------EEEEEEEEEEEEEEEHHHHHHC-TTGGGSHHHHCTTCSSEEECHHHHHHHHHHT
T ss_pred EE----------EEEEEEceecCCcccHHHHhcC-cCcccCeeeeccCCCceeeCHHHHHHHHHhh
Confidence 32 344555533 34444444432 1222222233333 23456666666666654
No 38
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=25.28 E-value=64 Score=30.94 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=42.2
Q ss_pred EEEEEeeC----ChhhHHHHHHc-Ceeeeccc-cHHHHHHHhccCCcEEEEEEeCCCCceeEEEEeccCCC
Q 005338 263 RYFIVKSC----NRENLELSVQQ-GVWATQRS-NEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIG 327 (701)
Q Consensus 263 RFFIIKS~----n~enI~~Sik~-gVWaTt~~-ne~kLn~AF~~~~~V~LfFSVN~Sg~FqG~ArM~S~~~ 327 (701)
+|.|+||- +.+++...-.. -.|.-.++ .-+.+-++-+..+.|+|.-| |....+.|+|++++...
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~WdGVRNyqArN~mr~Mk~GD~~fFYHS-~~~~gIvGi~eVv~e~y 72 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHS-NEGLDVVGIVEVCALSH 72 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHHHHHHTCCTTCEEEEEET-TTTCEEEEEEEEEEEEE
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceecCcccHHHHHHHHhccCCCEEEEEEe-CCCCceEEEEEEeeecc
Confidence 59999985 66777764442 46974332 22444456566555555545 58999999999998643
No 39
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.75 E-value=16 Score=38.46 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.8
Q ss_pred CCCCCcccccCC
Q 005338 175 HGNPNKHFQQRG 186 (701)
Q Consensus 175 yg~~~Kf~q~r~ 186 (701)
.|.-.|-|.++|
T Consensus 109 ~GgGRKp~RQKG 120 (293)
T 3bbo_G 109 RGGGRKPYPQKK 120 (293)
T ss_dssp SSSCCCCCCCSS
T ss_pred ccCCCceeccCC
Confidence 344445555555
No 40
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=23.91 E-value=16 Score=41.13 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=6.7
Q ss_pred HHHHHhccCCcEEE
Q 005338 293 KLNEAFDSAENVIL 306 (701)
Q Consensus 293 kLn~AF~~~~~V~L 306 (701)
.|.+..+...+|+|
T Consensus 235 ~le~i~~~g~~lvI 248 (547)
T 1kp8_A 235 VLEAVAKAGKPLLI 248 (547)
T ss_dssp HHHHHHGGGCCEEE
T ss_pred HHHHHHhcCCCEEE
Confidence 44444444445444
No 41
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=22.81 E-value=99 Score=21.60 Aligned_cols=8 Identities=75% Similarity=1.369 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 005338 536 PGGMMFPG 543 (701)
Q Consensus 536 ~~~~m~~g 543 (701)
|+-|.|||
T Consensus 12 pgvmgfpg 19 (31)
T 4gyx_A 12 PGVMGFPG 19 (31)
T ss_dssp CCCCCCCC
T ss_pred CccccCCC
Confidence 34444554
Done!