Query 005339
Match_columns 701
No_of_seqs 170 out of 196
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 4E-33 8.6E-38 313.5 39.5 371 271-669 108-511 (511)
2 KOG4677 Golgi integral membran 100.0 4.1E-30 8.8E-35 275.4 40.7 378 245-679 157-551 (554)
3 KOG0612 Rho-associated, coiled 99.5 8.6E-12 1.9E-16 147.8 30.8 311 239-588 534-883 (1317)
4 KOG0963 Transcription factor/C 99.3 4.1E-09 9E-14 119.2 30.1 143 301-443 193-342 (629)
5 TIGR02169 SMC_prok_A chromosom 99.0 4.3E-05 9.2E-10 93.5 47.9 7 668-674 614-620 (1164)
6 TIGR02169 SMC_prok_A chromosom 98.9 2.5E-05 5.3E-10 95.5 45.0 7 646-652 564-570 (1164)
7 TIGR02168 SMC_prok_B chromosom 98.9 3.7E-05 8.1E-10 93.6 44.2 58 520-578 966-1023(1179)
8 TIGR02168 SMC_prok_B chromosom 98.9 5E-05 1.1E-09 92.5 45.0 31 544-574 996-1026(1179)
9 PF07888 CALCOCO1: Calcium bin 98.9 0.00015 3.2E-09 83.0 44.9 87 498-588 371-457 (546)
10 KOG0161 Myosin class II heavy 98.9 0.00011 2.3E-09 93.9 47.7 50 435-484 1051-1100(1930)
11 KOG0161 Myosin class II heavy 98.9 4.2E-05 9.2E-10 97.4 43.6 156 243-405 980-1144(1930)
12 PF08172 CASP_C: CASP C termin 98.8 4.8E-08 1E-12 101.9 14.6 49 632-680 195-243 (248)
13 PRK02224 chromosome segregatio 98.7 0.00087 1.9E-08 80.9 48.3 17 246-262 208-224 (880)
14 PRK02224 chromosome segregatio 98.7 0.00081 1.8E-08 81.1 47.8 16 516-531 624-639 (880)
15 COG1196 Smc Chromosome segrega 98.6 0.0018 3.9E-08 80.9 47.5 98 278-376 188-286 (1163)
16 PF10174 Cast: RIM-binding pro 98.6 0.00066 1.4E-08 81.0 40.6 71 511-589 293-363 (775)
17 TIGR00606 rad50 rad50. This fa 98.6 0.0011 2.4E-08 83.6 44.5 35 544-578 1057-1091(1311)
18 COG1196 Smc Chromosome segrega 98.6 0.0019 4.1E-08 80.7 45.4 38 549-586 971-1008(1163)
19 KOG0612 Rho-associated, coiled 98.6 0.0021 4.6E-08 78.3 43.4 185 290-479 494-693 (1317)
20 KOG0971 Microtubule-associated 98.6 0.0014 3E-08 77.6 40.6 119 249-386 229-347 (1243)
21 PF00261 Tropomyosin: Tropomyo 98.6 6.1E-05 1.3E-09 78.0 27.1 83 505-588 134-216 (237)
22 TIGR00606 rad50 rad50. This fa 98.5 0.0018 3.9E-08 81.9 44.9 20 554-573 1053-1072(1311)
23 KOG0977 Nuclear envelope prote 98.5 0.00045 9.8E-09 79.1 35.3 86 496-581 294-382 (546)
24 PF05701 WEMBL: Weak chloropla 98.5 0.0067 1.5E-07 69.9 43.5 88 495-583 320-407 (522)
25 PF00261 Tropomyosin: Tropomyo 98.5 0.00022 4.9E-09 73.9 28.3 225 245-478 2-229 (237)
26 PRK03918 chromosome segregatio 98.4 0.011 2.3E-07 71.4 46.4 27 451-477 403-429 (880)
27 PRK03918 chromosome segregatio 98.4 0.012 2.5E-07 71.1 46.2 10 648-657 816-825 (880)
28 KOG4674 Uncharacterized conser 98.4 0.0091 2E-07 76.1 45.7 100 270-373 655-754 (1822)
29 PF07888 CALCOCO1: Calcium bin 98.4 0.0095 2.1E-07 68.6 44.1 63 248-321 140-202 (546)
30 KOG0976 Rho/Rac1-interacting s 98.3 0.015 3.3E-07 68.5 44.6 32 449-480 280-311 (1265)
31 PF10174 Cast: RIM-binding pro 98.3 0.01 2.3E-07 71.1 41.7 124 280-404 228-361 (775)
32 PF12128 DUF3584: Protein of u 98.3 0.025 5.5E-07 71.2 47.1 23 544-566 603-625 (1201)
33 KOG4674 Uncharacterized conser 98.3 0.015 3.3E-07 74.1 44.2 92 306-398 800-891 (1822)
34 PRK04863 mukB cell division pr 98.3 0.018 3.9E-07 73.5 44.0 293 277-588 287-598 (1486)
35 KOG0976 Rho/Rac1-interacting s 98.3 0.024 5.3E-07 66.8 41.4 103 373-480 272-385 (1265)
36 KOG1029 Endocytic adaptor prot 98.3 0.0046 1E-07 72.5 34.9 146 419-575 445-598 (1118)
37 KOG4643 Uncharacterized coiled 98.2 0.033 7.1E-07 67.3 43.6 264 308-581 261-556 (1195)
38 KOG0996 Structural maintenance 98.2 0.022 4.7E-07 69.7 40.7 63 498-575 542-604 (1293)
39 PF00038 Filament: Intermediat 98.2 0.014 3E-07 62.2 37.2 84 493-576 211-297 (312)
40 PF09726 Macoilin: Transmembra 98.2 0.0019 4.1E-08 76.7 30.6 57 330-386 440-496 (697)
41 PF09726 Macoilin: Transmembra 98.2 0.015 3.3E-07 69.2 38.1 38 361-399 542-579 (697)
42 PRK04863 mukB cell division pr 98.1 0.058 1.3E-06 69.1 44.1 35 493-527 567-601 (1486)
43 KOG0977 Nuclear envelope prote 98.1 0.017 3.8E-07 66.5 35.2 279 280-582 46-369 (546)
44 PF12128 DUF3584: Protein of u 98.1 0.053 1.1E-06 68.4 41.9 26 559-584 508-533 (1201)
45 KOG0996 Structural maintenance 98.0 0.11 2.5E-06 63.8 42.9 46 544-589 545-590 (1293)
46 KOG4673 Transcription factor T 97.9 0.088 1.9E-06 61.6 44.2 35 547-581 724-758 (961)
47 PF00038 Filament: Intermediat 97.9 0.047 1E-06 58.2 37.0 40 496-535 207-246 (312)
48 KOG1029 Endocytic adaptor prot 97.9 0.043 9.4E-07 64.7 34.1 165 358-534 410-578 (1118)
49 PF15070 GOLGA2L5: Putative go 97.9 0.091 2E-06 61.9 36.9 58 246-303 6-63 (617)
50 PF09787 Golgin_A5: Golgin sub 97.9 0.019 4.1E-07 66.1 30.5 139 341-480 107-248 (511)
51 KOG4673 Transcription factor T 97.9 0.12 2.6E-06 60.6 42.3 49 435-483 714-762 (961)
52 PF05701 WEMBL: Weak chloropla 97.8 0.13 2.7E-06 59.6 44.8 141 428-586 277-424 (522)
53 PF12718 Tropomyosin_1: Tropom 97.8 0.0061 1.3E-07 59.1 21.4 139 340-480 4-142 (143)
54 KOG0933 Structural maintenance 97.8 0.1 2.2E-06 63.4 35.1 32 630-661 1012-1043(1174)
55 KOG0971 Microtubule-associated 97.7 0.22 4.9E-06 59.9 46.2 34 349-382 324-357 (1243)
56 PHA02562 46 endonuclease subun 97.7 0.021 4.6E-07 65.3 27.1 38 345-382 215-252 (562)
57 KOG4643 Uncharacterized coiled 97.7 0.3 6.6E-06 59.4 39.7 63 388-454 410-472 (1195)
58 KOG0250 DNA repair protein RAD 97.6 0.18 3.8E-06 61.9 34.1 41 545-585 419-459 (1074)
59 KOG0995 Centromere-associated 97.6 0.29 6.3E-06 56.6 42.5 86 245-331 236-321 (581)
60 KOG0999 Microtubule-associated 97.5 0.12 2.5E-06 59.4 29.0 194 372-588 44-241 (772)
61 PF14662 CCDC155: Coiled-coil 97.5 0.13 2.8E-06 52.3 26.3 102 353-459 63-164 (193)
62 KOG0933 Structural maintenance 97.5 0.52 1.1E-05 57.6 38.0 111 290-407 691-808 (1174)
63 KOG0250 DNA repair protein RAD 97.5 0.49 1.1E-05 58.3 35.1 36 334-369 219-254 (1074)
64 PF15070 GOLGA2L5: Putative go 97.4 0.49 1.1E-05 56.0 45.9 135 252-400 1-136 (617)
65 KOG0994 Extracellular matrix g 97.4 0.66 1.4E-05 57.3 40.0 38 548-585 1710-1747(1758)
66 PF05557 MAD: Mitotic checkpoi 97.3 4.9E-05 1.1E-09 90.2 0.0 14 417-430 256-269 (722)
67 PF01576 Myosin_tail_1: Myosin 97.3 5.3E-05 1.2E-09 91.5 0.0 154 419-573 315-486 (859)
68 KOG0995 Centromere-associated 97.3 0.59 1.3E-05 54.2 40.2 103 275-381 220-325 (581)
69 PF05483 SCP-1: Synaptonemal c 97.3 0.68 1.5E-05 54.6 45.8 228 252-482 223-521 (786)
70 PRK04778 septation ring format 97.2 0.72 1.6E-05 54.0 38.4 24 388-411 284-307 (569)
71 PF09730 BicD: Microtubule-ass 97.2 1 2.2E-05 54.1 41.9 78 305-382 28-115 (717)
72 PRK01156 chromosome segregatio 97.1 1.2 2.6E-05 54.5 43.6 12 644-655 825-836 (895)
73 PF01576 Myosin_tail_1: Myosin 97.0 0.00015 3.2E-09 87.8 0.0 42 439-480 363-404 (859)
74 KOG0964 Structural maintenance 97.0 1.4 3.1E-05 53.9 38.3 55 342-397 236-290 (1200)
75 COG4942 Membrane-bound metallo 97.0 0.75 1.6E-05 51.9 28.6 50 278-327 61-110 (420)
76 PF12718 Tropomyosin_1: Tropom 97.0 0.16 3.4E-06 49.4 20.6 126 278-412 16-141 (143)
77 PRK09039 hypothetical protein; 97.0 0.21 4.6E-06 54.9 24.1 123 275-402 45-167 (343)
78 PF05667 DUF812: Protein of un 97.0 0.58 1.3E-05 55.1 28.7 84 498-587 447-537 (594)
79 KOG1003 Actin filament-coating 97.0 0.47 1E-05 48.4 24.1 115 433-586 68-182 (205)
80 PF06160 EzrA: Septation ring 96.8 1.6 3.4E-05 51.2 38.5 91 388-478 280-376 (560)
81 KOG0980 Actin-binding protein 96.8 2 4.3E-05 52.2 41.3 106 344-475 411-516 (980)
82 KOG0964 Structural maintenance 96.8 2.3 4.9E-05 52.2 38.9 129 271-407 186-321 (1200)
83 PRK04778 septation ring format 96.8 1.8 3.8E-05 50.8 39.3 39 549-587 391-429 (569)
84 PF05557 MAD: Mitotic checkpoi 96.7 0.0019 4.2E-08 76.8 6.1 36 545-580 500-535 (722)
85 PF06160 EzrA: Septation ring 96.7 1.9 4.1E-05 50.5 37.4 39 544-582 375-413 (560)
86 KOG0946 ER-Golgi vesicle-tethe 96.7 0.54 1.2E-05 56.3 25.1 61 244-304 653-713 (970)
87 TIGR02680 conserved hypothetic 96.7 1.7 3.7E-05 55.9 31.7 42 544-585 924-965 (1353)
88 COG4942 Membrane-bound metallo 96.6 1.8 3.9E-05 49.0 30.1 39 284-322 39-77 (420)
89 KOG0994 Extracellular matrix g 96.5 3.6 7.8E-05 51.3 37.6 39 547-585 1695-1733(1758)
90 COG1579 Zn-ribbon protein, pos 96.5 0.78 1.7E-05 48.4 22.5 102 276-386 21-125 (239)
91 COG1579 Zn-ribbon protein, pos 96.5 0.21 4.5E-06 52.5 18.3 83 445-535 51-133 (239)
92 PF05622 HOOK: HOOK protein; 96.5 0.00069 1.5E-08 80.5 0.0 77 303-380 338-414 (713)
93 PRK09039 hypothetical protein; 96.5 1.9 4.1E-05 47.6 26.8 137 434-588 62-198 (343)
94 KOG0978 E3 ubiquitin ligase in 96.5 3.1 6.7E-05 49.8 31.2 60 421-480 541-600 (698)
95 PF09755 DUF2046: Uncharacteri 96.4 2 4.3E-05 46.8 34.1 117 254-386 33-150 (310)
96 PLN03188 kinesin-12 family pro 96.4 4.8 0.0001 50.9 37.9 142 428-588 1100-1244(1320)
97 PF15619 Lebercilin: Ciliary p 96.3 1.5 3.2E-05 44.8 26.1 128 332-473 57-191 (194)
98 PF07111 HCR: Alpha helical co 96.3 3.8 8.3E-05 48.8 43.7 40 408-447 328-367 (739)
99 TIGR03185 DNA_S_dndD DNA sulfu 96.2 4 8.6E-05 48.6 37.4 45 291-335 210-254 (650)
100 TIGR01005 eps_transp_fam exopo 96.2 3.9 8.4E-05 49.3 29.4 36 347-382 191-226 (754)
101 KOG0018 Structural maintenance 96.2 5.3 0.00011 49.6 34.8 37 496-532 861-897 (1141)
102 PF15619 Lebercilin: Ciliary p 96.1 1.9 4.1E-05 44.1 23.9 77 245-332 13-89 (194)
103 PF14662 CCDC155: Coiled-coil 96.1 1.9 4.2E-05 44.0 27.3 124 274-402 13-139 (193)
104 PF09730 BicD: Microtubule-ass 96.1 4.9 0.00011 48.5 41.5 326 251-585 34-463 (717)
105 TIGR03007 pepcterm_ChnLen poly 96.1 3.7 8E-05 46.8 28.0 33 557-589 350-382 (498)
106 PF10473 CENP-F_leu_zip: Leuci 96.0 1.3 2.9E-05 43.1 19.7 96 292-392 5-100 (140)
107 PF13514 AAA_27: AAA domain 96.0 6.9 0.00015 49.4 43.4 19 461-479 855-873 (1111)
108 TIGR02680 conserved hypothetic 96.0 7.9 0.00017 50.1 33.2 36 351-386 787-822 (1353)
109 PF13851 GAS: Growth-arrest sp 95.9 2.5 5.4E-05 43.3 26.0 81 492-572 94-174 (201)
110 PRK11281 hypothetical protein; 95.8 8.1 0.00018 49.0 45.6 33 447-479 300-332 (1113)
111 KOG0999 Microtubule-associated 95.8 5.2 0.00011 46.6 38.1 83 350-437 107-189 (772)
112 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.1 2.3E-05 42.8 18.0 110 352-473 5-118 (132)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.2 2.7E-05 42.4 18.3 121 440-581 11-131 (132)
114 KOG4677 Golgi integral membran 95.7 5.3 0.00011 45.5 24.8 88 388-477 208-295 (554)
115 PF14992 TMCO5: TMCO5 family 95.5 4.3 9.3E-05 43.8 22.8 34 369-403 16-49 (280)
116 PF06705 SF-assemblin: SF-asse 95.5 3.9 8.4E-05 42.8 25.8 127 272-408 81-219 (247)
117 PF08317 Spc7: Spc7 kinetochor 95.3 1.8 3.8E-05 47.3 19.8 123 273-403 146-268 (325)
118 TIGR01843 type_I_hlyD type I s 95.3 5.8 0.00013 43.5 25.6 7 243-249 68-74 (423)
119 KOG2129 Uncharacterized conser 95.2 6 0.00013 44.7 23.2 146 292-454 145-314 (552)
120 PF09728 Taxilin: Myosin-like 95.2 5.9 0.00013 43.3 41.5 65 454-528 203-267 (309)
121 KOG0980 Actin-binding protein 95.1 11 0.00024 46.0 35.6 97 389-485 420-519 (980)
122 KOG0982 Centrosomal protein Nu 95.1 5.1 0.00011 45.4 22.3 143 233-379 264-418 (502)
123 PF05667 DUF812: Protein of un 95.1 10 0.00022 45.1 35.5 43 440-482 441-483 (594)
124 PRK10929 putative mechanosensi 95.0 15 0.00032 46.7 50.5 34 447-480 280-313 (1109)
125 PRK01156 chromosome segregatio 95.0 12 0.00027 45.9 48.6 6 37-42 30-35 (895)
126 PF06818 Fez1: Fez1; InterPro 94.8 5.7 0.00012 41.0 22.4 154 270-427 8-172 (202)
127 PF08614 ATG16: Autophagy prot 94.8 0.26 5.6E-06 49.8 10.8 106 273-382 71-183 (194)
128 PF09728 Taxilin: Myosin-like 94.7 7.9 0.00017 42.3 37.2 114 258-374 39-152 (309)
129 PF05622 HOOK: HOOK protein; 94.6 0.0096 2.1E-07 71.0 0.0 25 544-568 498-522 (713)
130 KOG0946 ER-Golgi vesicle-tethe 94.5 15 0.00033 44.7 31.7 82 502-583 852-939 (970)
131 PF13851 GAS: Growth-arrest sp 94.5 6.5 0.00014 40.3 23.9 95 280-382 38-132 (201)
132 TIGR03007 pepcterm_ChnLen poly 94.5 11 0.00024 43.0 25.1 11 656-666 476-486 (498)
133 PF14915 CCDC144C: CCDC144C pr 94.5 8.9 0.00019 41.7 34.4 30 558-587 217-246 (305)
134 PF10212 TTKRSYEDQ: Predicted 94.3 12 0.00026 43.5 23.7 75 497-575 440-514 (518)
135 COG0419 SbcC ATPase involved i 94.3 18 0.0004 44.7 47.3 13 245-257 233-245 (908)
136 PF05911 DUF869: Plant protein 94.3 18 0.00038 44.3 28.0 120 346-466 592-714 (769)
137 TIGR03185 DNA_S_dndD DNA sulfu 94.3 16 0.00034 43.6 35.6 35 344-378 217-251 (650)
138 PF09755 DUF2046: Uncharacteri 94.0 11 0.00025 41.1 36.0 53 280-332 24-76 (310)
139 PF10168 Nup88: Nuclear pore c 93.9 17 0.00037 44.1 25.2 79 495-577 636-714 (717)
140 PRK10884 SH3 domain-containing 93.7 1 2.2E-05 46.5 12.5 50 331-380 120-169 (206)
141 PF14915 CCDC144C: CCDC144C pr 93.7 13 0.00028 40.6 39.2 202 306-518 33-248 (305)
142 PF04849 HAP1_N: HAP1 N-termin 93.7 13 0.00029 40.7 26.2 24 360-383 163-186 (306)
143 smart00787 Spc7 Spc7 kinetocho 93.6 5.4 0.00012 43.7 18.5 121 274-402 142-262 (312)
144 KOG0018 Structural maintenance 93.4 28 0.00061 43.7 37.6 41 333-373 231-271 (1141)
145 TIGR01005 eps_transp_fam exopo 93.4 23 0.0005 42.7 25.6 25 88-112 70-95 (754)
146 KOG1937 Uncharacterized conser 93.2 19 0.00041 41.3 23.9 71 509-585 356-426 (521)
147 KOG0963 Transcription factor/C 93.1 23 0.0005 42.0 38.7 46 635-681 575-620 (629)
148 PLN02939 transferase, transfer 93.1 30 0.00066 43.3 30.3 140 419-570 258-398 (977)
149 COG4372 Uncharacterized protei 92.9 19 0.00042 40.5 30.9 20 513-532 260-279 (499)
150 PF05010 TACC: Transforming ac 92.9 13 0.00029 38.5 28.1 44 517-575 159-202 (207)
151 PF08614 ATG16: Autophagy prot 92.9 0.5 1.1E-05 47.8 8.7 93 496-589 79-171 (194)
152 TIGR01010 BexC_CtrB_KpsE polys 92.7 18 0.00039 39.7 24.1 35 558-592 274-308 (362)
153 TIGR01843 type_I_hlyD type I s 92.7 18 0.0004 39.6 25.9 32 342-373 150-181 (423)
154 PF04156 IncA: IncA protein; 92.7 7.7 0.00017 38.6 16.8 45 280-324 78-122 (191)
155 KOG1003 Actin filament-coating 92.7 14 0.0003 38.1 27.2 43 431-473 87-129 (205)
156 COG4372 Uncharacterized protei 92.5 22 0.00048 40.1 31.5 37 350-386 116-152 (499)
157 KOG0962 DNA repair protein RAD 92.3 44 0.00095 43.0 37.3 67 492-561 1016-1082(1294)
158 smart00787 Spc7 Spc7 kinetocho 92.2 12 0.00026 41.0 18.8 135 251-400 147-285 (312)
159 KOG1853 LIS1-interacting prote 92.2 19 0.00041 38.5 21.9 95 347-453 49-154 (333)
160 PF07111 HCR: Alpha helical co 92.1 34 0.00074 41.3 42.5 63 324-386 150-212 (739)
161 COG0419 SbcC ATPase involved i 92.0 40 0.00086 41.9 48.3 28 255-282 281-308 (908)
162 COG3883 Uncharacterized protei 91.9 21 0.00045 38.5 25.5 37 347-383 131-167 (265)
163 PF10481 CENP-F_N: Cenp-F N-te 91.8 8 0.00017 41.6 16.1 57 540-596 73-129 (307)
164 KOG4593 Mitotic checkpoint pro 91.6 38 0.00081 40.8 35.3 23 360-382 115-137 (716)
165 PF04156 IncA: IncA protein; 91.6 16 0.00034 36.4 17.6 57 419-475 131-187 (191)
166 PF04849 HAP1_N: HAP1 N-termin 90.5 31 0.00067 37.9 25.6 26 307-332 163-188 (306)
167 KOG0249 LAR-interacting protei 90.4 50 0.0011 40.1 22.2 43 343-386 210-252 (916)
168 PF12325 TMF_TATA_bd: TATA ele 90.1 11 0.00024 35.9 14.0 93 303-404 22-114 (120)
169 PF05911 DUF869: Plant protein 90.0 56 0.0012 40.2 31.3 23 547-569 271-293 (769)
170 PF05483 SCP-1: Synaptonemal c 90.0 52 0.0011 39.7 47.0 26 306-331 351-376 (786)
171 COG3883 Uncharacterized protei 90.0 31 0.00067 37.2 23.0 42 544-585 186-227 (265)
172 KOG4360 Uncharacterized coiled 89.9 14 0.0003 42.9 16.8 136 237-376 159-301 (596)
173 PF12325 TMF_TATA_bd: TATA ele 89.8 19 0.00041 34.4 15.8 13 390-402 72-84 (120)
174 PF05010 TACC: Transforming ac 89.5 29 0.00062 36.1 29.2 42 393-437 118-159 (207)
175 COG2433 Uncharacterized conser 89.5 6.3 0.00014 46.5 14.0 89 288-377 420-508 (652)
176 KOG4360 Uncharacterized coiled 89.4 49 0.0011 38.6 20.8 100 341-441 196-298 (596)
177 KOG0249 LAR-interacting protei 89.4 32 0.00069 41.6 19.6 37 651-687 582-619 (916)
178 PRK10929 putative mechanosensi 89.3 76 0.0016 40.6 42.4 41 546-586 381-421 (1109)
179 PRK11281 hypothetical protein; 89.3 76 0.0017 40.7 33.8 33 340-372 146-178 (1113)
180 PF04111 APG6: Autophagy prote 89.2 11 0.00025 41.1 15.3 83 497-587 49-131 (314)
181 PF10481 CENP-F_N: Cenp-F N-te 89.2 15 0.00032 39.6 15.4 103 364-478 18-120 (307)
182 KOG4593 Mitotic checkpoint pro 89.0 61 0.0013 39.2 43.5 33 434-466 239-271 (716)
183 PF08317 Spc7: Spc7 kinetochor 89.0 39 0.00085 37.0 29.0 109 277-386 76-192 (325)
184 PF10205 KLRAQ: Predicted coil 89.0 6.1 0.00013 36.7 10.9 68 518-593 4-71 (102)
185 PF15254 CCDC14: Coiled-coil d 88.8 66 0.0014 39.4 23.2 44 15-58 12-59 (861)
186 PF11559 ADIP: Afadin- and alp 88.8 15 0.00032 35.5 14.3 55 278-332 68-122 (151)
187 PF13514 AAA_27: AAA domain 88.6 82 0.0018 40.1 46.8 31 449-479 804-834 (1111)
188 PRK10884 SH3 domain-containing 88.5 7.2 0.00016 40.3 12.5 44 356-400 124-167 (206)
189 PF11559 ADIP: Afadin- and alp 88.2 15 0.00032 35.5 13.9 80 273-352 70-149 (151)
190 PF15397 DUF4618: Domain of un 88.2 41 0.00089 36.1 29.0 57 350-407 81-141 (258)
191 COG1340 Uncharacterized archae 88.0 45 0.00097 36.5 33.5 39 544-582 217-255 (294)
192 PRK15178 Vi polysaccharide exp 87.9 41 0.00088 38.7 18.9 79 517-596 291-378 (434)
193 COG2433 Uncharacterized conser 87.9 14 0.00031 43.7 15.4 94 350-459 415-508 (652)
194 TIGR03017 EpsF chain length de 87.7 53 0.0011 36.9 25.8 121 277-405 172-301 (444)
195 PF10473 CENP-F_leu_zip: Leuci 87.1 32 0.00069 33.7 20.8 40 347-386 21-60 (140)
196 PF15397 DUF4618: Domain of un 86.9 49 0.0011 35.6 28.8 63 320-382 65-138 (258)
197 PF06785 UPF0242: Uncharacteri 86.8 26 0.00057 38.8 15.8 109 260-372 73-184 (401)
198 PF10168 Nup88: Nuclear pore c 86.4 90 0.0019 38.2 21.9 35 336-370 600-634 (717)
199 PF10498 IFT57: Intra-flagella 86.4 30 0.00065 38.7 16.6 37 286-322 216-252 (359)
200 PF00769 ERM: Ezrin/radixin/mo 86.3 30 0.00065 36.6 15.8 25 449-473 92-116 (246)
201 PF05335 DUF745: Protein of un 86.3 43 0.00093 34.4 18.1 113 335-466 59-171 (188)
202 PF00769 ERM: Ezrin/radixin/mo 85.9 51 0.0011 34.9 17.9 78 309-398 10-87 (246)
203 PF15450 DUF4631: Domain of un 85.8 80 0.0017 37.0 39.2 114 239-360 121-250 (531)
204 PRK10246 exonuclease subunit S 85.4 1.2E+02 0.0025 38.7 43.4 29 544-572 825-853 (1047)
205 KOG1853 LIS1-interacting prote 85.2 59 0.0013 35.0 22.4 118 347-473 63-184 (333)
206 TIGR03017 EpsF chain length de 84.7 74 0.0016 35.7 31.0 32 558-589 338-369 (444)
207 PF09789 DUF2353: Uncharacteri 84.3 72 0.0016 35.3 25.4 33 446-478 196-228 (319)
208 PF12240 Angiomotin_C: Angiomo 83.8 59 0.0013 33.8 17.0 81 311-407 3-92 (205)
209 PF06818 Fez1: Fez1; InterPro 83.5 60 0.0013 33.7 23.3 40 433-472 67-106 (202)
210 COG4913 Uncharacterized protei 82.8 1.3E+02 0.0028 37.0 27.8 61 509-569 780-851 (1104)
211 KOG0288 WD40 repeat protein Ti 82.8 60 0.0013 37.1 16.7 32 412-443 91-122 (459)
212 PF09304 Cortex-I_coil: Cortex 82.1 45 0.00099 31.4 15.7 17 388-404 60-76 (107)
213 PRK09841 cryptic autophosphory 80.8 1.4E+02 0.0031 36.2 24.3 30 559-588 367-396 (726)
214 PF06005 DUF904: Protein of un 80.7 33 0.00071 30.0 11.1 63 510-587 9-71 (72)
215 PF15254 CCDC14: Coiled-coil d 79.9 1.6E+02 0.0035 36.3 20.7 29 358-386 495-523 (861)
216 TIGR01000 bacteriocin_acc bact 79.8 1.2E+02 0.0025 34.7 22.7 15 283-297 104-118 (457)
217 PF09789 DUF2353: Uncharacteri 79.7 1.1E+02 0.0023 34.1 24.4 41 358-399 10-50 (319)
218 COG5185 HEC1 Protein involved 79.6 1.3E+02 0.0028 35.1 38.1 52 428-479 458-513 (622)
219 PF15290 Syntaphilin: Golgi-lo 79.3 18 0.00038 39.2 10.7 77 431-524 74-150 (305)
220 PF07889 DUF1664: Protein of u 79.1 30 0.00065 33.4 11.3 61 272-332 50-110 (126)
221 PF03148 Tektin: Tektin family 79.0 1.2E+02 0.0026 34.2 29.8 107 353-463 247-362 (384)
222 PRK10246 exonuclease subunit S 78.9 2E+02 0.0043 36.7 39.5 20 451-470 729-748 (1047)
223 PF10267 Tmemb_cc2: Predicted 78.8 1.2E+02 0.0026 34.5 17.7 56 350-408 276-332 (395)
224 PF04111 APG6: Autophagy prote 78.4 47 0.001 36.4 14.1 59 344-403 72-130 (314)
225 TIGR00618 sbcc exonuclease Sbc 78.3 2E+02 0.0043 36.5 43.6 22 278-299 182-203 (1042)
226 PF15294 Leu_zip: Leucine zipp 78.0 1E+02 0.0022 33.6 16.0 23 275-297 131-153 (278)
227 PF10146 zf-C4H2: Zinc finger- 78.0 70 0.0015 33.8 14.7 6 653-658 192-197 (230)
228 PF06705 SF-assemblin: SF-asse 77.8 96 0.0021 32.5 33.4 19 306-324 36-54 (247)
229 TIGR00618 sbcc exonuclease Sbc 77.2 2.1E+02 0.0046 36.2 46.2 12 662-673 657-668 (1042)
230 KOG0978 E3 ubiquitin ligase in 77.1 1.8E+02 0.004 35.4 43.6 78 503-588 529-606 (698)
231 COG1842 PspA Phage shock prote 77.1 1E+02 0.0022 32.4 27.7 95 306-401 47-142 (225)
232 KOG2991 Splicing regulator [RN 76.9 1.1E+02 0.0025 32.9 23.7 66 510-583 234-299 (330)
233 PF12777 MT: Microtubule-bindi 76.5 1.3E+02 0.0028 33.3 22.0 34 348-381 13-46 (344)
234 PF10498 IFT57: Intra-flagella 76.3 1.1E+02 0.0024 34.4 16.4 39 354-392 231-269 (359)
235 PF04012 PspA_IM30: PspA/IM30 76.3 95 0.0021 31.7 26.2 101 286-386 26-127 (221)
236 PF08826 DMPK_coil: DMPK coile 76.3 29 0.00062 29.5 9.1 58 256-324 2-59 (61)
237 KOG0804 Cytoplasmic Zn-finger 75.7 1.6E+02 0.0035 34.2 17.3 45 358-403 348-392 (493)
238 PF04582 Reo_sigmaC: Reovirus 75.4 4.5 9.7E-05 44.5 5.2 52 347-399 102-153 (326)
239 KOG0288 WD40 repeat protein Ti 75.1 79 0.0017 36.2 14.6 60 419-478 14-73 (459)
240 PF07106 TBPIP: Tat binding pr 75.0 47 0.001 32.7 11.9 64 493-569 74-137 (169)
241 KOG4403 Cell surface glycoprot 74.5 1.7E+02 0.0037 33.8 19.1 37 342-379 245-281 (575)
242 PF05384 DegS: Sensor protein 73.9 1E+02 0.0022 30.9 19.7 108 278-386 29-141 (159)
243 PF06120 Phage_HK97_TLTM: Tail 73.6 1.5E+02 0.0032 32.7 16.3 50 242-297 46-95 (301)
244 PF06008 Laminin_I: Laminin Do 72.6 1.3E+02 0.0029 31.7 31.8 47 428-476 123-169 (264)
245 PF10186 Atg14: UV radiation r 72.3 1.3E+02 0.0028 31.5 21.7 26 312-337 21-46 (302)
246 COG1842 PspA Phage shock prote 72.3 1.3E+02 0.0029 31.6 25.6 53 334-386 15-67 (225)
247 PLN03188 kinesin-12 family pro 71.2 3.3E+02 0.0071 35.6 26.5 22 512-533 1218-1239(1320)
248 PF14197 Cep57_CLD_2: Centroso 71.0 61 0.0013 28.1 10.1 62 295-360 3-64 (69)
249 PRK10361 DNA recombination pro 70.3 2.2E+02 0.0048 33.3 24.4 42 286-327 56-97 (475)
250 PRK10698 phage shock protein P 70.1 1.4E+02 0.0031 31.1 25.1 57 287-343 28-84 (222)
251 KOG1850 Myosin-like coiled-coi 70.0 1.9E+02 0.004 32.3 37.7 121 251-372 35-159 (391)
252 PF13870 DUF4201: Domain of un 70.0 1.2E+02 0.0026 30.1 16.3 33 507-539 107-139 (177)
253 PRK12704 phosphodiesterase; Pr 69.8 2.3E+02 0.0051 33.3 24.1 40 343-382 110-149 (520)
254 KOG1103 Predicted coiled-coil 69.8 2E+02 0.0043 32.5 23.8 9 396-404 149-157 (561)
255 TIGR00634 recN DNA repair prot 69.5 2.4E+02 0.0051 33.3 25.9 11 642-652 480-490 (563)
256 PF10186 Atg14: UV radiation r 68.8 1.6E+02 0.0034 30.9 25.9 28 628-656 198-225 (302)
257 PF07058 Myosin_HC-like: Myosi 68.4 1.4E+02 0.003 33.1 14.2 135 257-402 9-159 (351)
258 PF15066 CAGE1: Cancer-associa 67.6 2.5E+02 0.0054 32.8 26.5 35 285-319 319-353 (527)
259 TIGR02231 conserved hypothetic 67.5 50 0.0011 38.3 11.7 6 292-297 80-85 (525)
260 PF10234 Cluap1: Clusterin-ass 67.4 1.9E+02 0.0041 31.4 16.9 66 410-482 147-212 (267)
261 PF10212 TTKRSYEDQ: Predicted 67.1 1.2E+02 0.0027 35.5 14.5 97 249-363 418-514 (518)
262 PRK06975 bifunctional uroporph 66.8 3E+02 0.0064 33.4 18.4 118 347-479 382-501 (656)
263 PF04871 Uso1_p115_C: Uso1 / p 66.3 1.3E+02 0.0029 29.2 14.6 25 343-367 84-108 (136)
264 KOG2991 Splicing regulator [RN 66.2 2E+02 0.0043 31.2 23.3 26 150-175 26-51 (330)
265 PF02841 GBP_C: Guanylate-bind 66.1 2E+02 0.0043 31.1 15.8 59 267-325 199-257 (297)
266 PRK11519 tyrosine kinase; Prov 65.9 3.1E+02 0.0068 33.3 23.3 22 91-112 86-108 (719)
267 KOG4572 Predicted DNA-binding 65.9 3.5E+02 0.0075 33.8 25.1 141 338-488 924-1080(1424)
268 KOG0804 Cytoplasmic Zn-finger 65.8 2.6E+02 0.0057 32.5 16.9 16 150-165 133-148 (493)
269 PF14197 Cep57_CLD_2: Centroso 65.6 81 0.0018 27.3 9.8 38 343-380 5-42 (69)
270 PF09486 HrpB7: Bacterial type 65.1 1.6E+02 0.0034 29.6 14.5 58 229-286 7-64 (158)
271 TIGR02977 phageshock_pspA phag 64.7 1.8E+02 0.0038 30.1 25.8 31 312-342 53-83 (219)
272 COG4026 Uncharacterized protei 64.3 60 0.0013 34.3 10.2 45 435-479 138-182 (290)
273 KOG4302 Microtubule-associated 64.1 3.4E+02 0.0073 33.1 21.8 147 421-585 99-256 (660)
274 PF06008 Laminin_I: Laminin Do 63.8 2E+02 0.0043 30.4 28.4 55 257-311 54-108 (264)
275 PF09304 Cortex-I_coil: Cortex 63.4 1.4E+02 0.0029 28.3 14.8 34 289-322 36-69 (107)
276 PF10267 Tmemb_cc2: Predicted 63.4 2.7E+02 0.0059 31.8 17.6 49 351-403 245-293 (395)
277 KOG0993 Rab5 GTPase effector R 63.4 2.8E+02 0.0061 31.9 31.2 39 544-582 416-454 (542)
278 KOG4603 TBP-1 interacting prot 63.1 60 0.0013 33.0 9.6 40 283-322 79-118 (201)
279 PF08826 DMPK_coil: DMPK coile 63.0 96 0.0021 26.4 9.7 9 316-324 2-10 (61)
280 KOG0979 Structural maintenance 62.8 4.2E+02 0.0091 33.8 29.4 150 270-424 189-356 (1072)
281 PF14257 DUF4349: Domain of un 62.5 1.4E+02 0.0029 31.5 12.9 26 557-582 164-189 (262)
282 PF15290 Syntaphilin: Golgi-lo 62.2 2.4E+02 0.0052 30.9 14.4 48 266-331 62-109 (305)
283 PLN02939 transferase, transfer 62.1 4.3E+02 0.0094 33.7 30.9 10 153-162 72-81 (977)
284 PF05384 DegS: Sensor protein 62.0 1.8E+02 0.0039 29.2 15.2 69 517-585 53-121 (159)
285 PF14988 DUF4515: Domain of un 61.0 2.1E+02 0.0046 29.7 27.7 24 308-331 51-74 (206)
286 PF06548 Kinesin-related: Kine 60.9 3.2E+02 0.007 31.8 36.3 142 428-588 330-474 (488)
287 PF04912 Dynamitin: Dynamitin 60.5 2.9E+02 0.0062 31.1 22.6 10 449-458 249-258 (388)
288 PF15035 Rootletin: Ciliary ro 60.3 2E+02 0.0044 29.3 21.1 27 273-299 13-39 (182)
289 PF02403 Seryl_tRNA_N: Seryl-t 58.9 80 0.0017 28.7 9.2 67 309-376 34-100 (108)
290 COG1340 Uncharacterized archae 58.8 2.8E+02 0.0062 30.5 34.6 8 546-553 240-247 (294)
291 PF04012 PspA_IM30: PspA/IM30 58.5 2.2E+02 0.0047 29.1 24.9 43 435-477 101-143 (221)
292 PF04799 Fzo_mitofusin: fzo-li 58.4 62 0.0013 32.9 8.9 66 248-327 102-167 (171)
293 PF00901 Orbi_VP5: Orbivirus o 57.9 3.7E+02 0.0081 31.6 20.2 80 341-423 138-217 (508)
294 PRK10361 DNA recombination pro 57.8 3.7E+02 0.008 31.5 23.8 11 643-653 352-362 (475)
295 PF06005 DUF904: Protein of un 57.7 1.3E+02 0.0028 26.3 11.1 21 366-386 41-61 (72)
296 PF08172 CASP_C: CASP C termin 57.3 1.6E+02 0.0035 31.4 12.3 31 356-386 85-115 (248)
297 KOG2129 Uncharacterized conser 57.2 3.6E+02 0.0078 31.2 27.7 33 492-527 254-286 (552)
298 PF04102 SlyX: SlyX; InterPro 56.8 51 0.0011 28.2 7.0 49 281-329 2-50 (69)
299 KOG0239 Kinesin (KAR3 subfamil 56.7 3.5E+02 0.0075 33.1 16.3 132 248-380 179-316 (670)
300 KOG4809 Rab6 GTPase-interactin 55.9 4.3E+02 0.0092 31.6 34.4 29 544-572 531-559 (654)
301 PF14992 TMCO5: TMCO5 family 55.8 3.1E+02 0.0067 30.0 14.1 81 347-445 8-97 (280)
302 KOG2077 JNK/SAPK-associated pr 55.3 2.2E+02 0.0048 34.0 13.6 14 235-248 260-273 (832)
303 PF11365 DUF3166: Protein of u 54.5 33 0.00072 31.7 5.8 37 346-382 4-40 (96)
304 TIGR03319 YmdA_YtgF conserved 54.5 4.2E+02 0.0092 31.2 24.0 7 395-401 154-160 (514)
305 PRK10803 tol-pal system protei 54.3 76 0.0016 33.9 9.4 58 419-476 41-98 (263)
306 TIGR02977 phageshock_pspA phag 54.0 2.7E+02 0.0059 28.8 26.3 25 358-382 39-63 (219)
307 PF02994 Transposase_22: L1 tr 53.8 41 0.00089 37.7 7.6 32 355-386 142-173 (370)
308 TIGR01010 BexC_CtrB_KpsE polys 53.5 3.4E+02 0.0074 29.8 17.3 55 349-403 169-231 (362)
309 COG4717 Uncharacterized conser 53.3 5.7E+02 0.012 32.3 30.2 241 330-583 551-809 (984)
310 PF15450 DUF4631: Domain of un 53.2 4.5E+02 0.0098 31.1 45.9 84 314-398 109-212 (531)
311 PRK02119 hypothetical protein; 53.2 78 0.0017 27.6 7.6 45 281-325 7-51 (73)
312 PF08232 Striatin: Striatin fa 52.9 41 0.0009 32.5 6.5 49 282-330 24-72 (134)
313 TIGR00634 recN DNA repair prot 52.8 4.5E+02 0.0098 31.0 27.9 37 543-582 348-384 (563)
314 PF09744 Jnk-SapK_ap_N: JNK_SA 52.6 2.5E+02 0.0055 28.1 15.9 58 309-380 55-112 (158)
315 PRK02793 phi X174 lysis protei 52.4 82 0.0018 27.4 7.6 45 281-325 6-50 (72)
316 KOG0982 Centrosomal protein Nu 52.4 4.3E+02 0.0094 30.7 34.4 36 347-382 308-343 (502)
317 PRK00295 hypothetical protein; 52.4 96 0.0021 26.6 8.0 44 281-324 3-46 (68)
318 PF10046 BLOC1_2: Biogenesis o 51.4 1.9E+02 0.0042 26.3 12.8 84 282-366 13-96 (99)
319 KOG4403 Cell surface glycoprot 51.3 4.5E+02 0.0098 30.6 16.7 86 237-335 235-326 (575)
320 PF12795 MscS_porin: Mechanose 51.0 3.1E+02 0.0067 28.6 21.9 60 516-576 154-213 (240)
321 KOG4571 Activating transcripti 50.9 85 0.0018 34.3 9.0 42 341-382 246-287 (294)
322 PRK15422 septal ring assembly 50.7 1.9E+02 0.0041 26.0 10.0 69 510-586 9-77 (79)
323 PRK09343 prefoldin subunit bet 50.5 2.3E+02 0.0049 26.9 12.3 38 436-473 4-41 (121)
324 PF15175 SPATA24: Spermatogene 50.2 2.4E+02 0.0051 28.2 11.1 64 397-460 7-84 (153)
325 PRK04406 hypothetical protein; 49.4 94 0.002 27.3 7.6 44 281-324 9-52 (75)
326 COG4477 EzrA Negative regulato 49.2 5.3E+02 0.012 30.8 36.8 21 277-297 165-185 (570)
327 PF09738 DUF2051: Double stran 48.4 2.4E+02 0.0053 31.0 12.2 21 508-528 279-299 (302)
328 PRK00106 hypothetical protein; 48.4 5.4E+02 0.012 30.6 24.2 6 647-652 403-408 (535)
329 PRK09841 cryptic autophosphory 47.6 6.1E+02 0.013 31.0 18.2 23 90-112 85-108 (726)
330 PF02403 Seryl_tRNA_N: Seryl-t 47.3 1.5E+02 0.0032 26.9 9.0 33 543-575 69-101 (108)
331 PF05700 BCAS2: Breast carcino 47.2 3.5E+02 0.0076 28.1 12.8 87 288-381 134-220 (221)
332 PRK00736 hypothetical protein; 47.2 1.2E+02 0.0025 26.1 7.7 44 282-325 4-47 (68)
333 smart00806 AIP3 Actin interact 46.7 5.2E+02 0.011 29.9 23.1 17 388-404 157-173 (426)
334 PF09731 Mitofilin: Mitochondr 46.6 5.5E+02 0.012 30.2 23.9 14 396-409 363-376 (582)
335 TIGR01069 mutS2 MutS2 family p 46.5 6.6E+02 0.014 31.1 16.8 24 125-148 248-271 (771)
336 KOG4807 F-actin binding protei 45.9 5.2E+02 0.011 29.7 28.5 23 309-331 350-372 (593)
337 PRK10698 phage shock protein P 45.9 3.7E+02 0.0081 28.0 26.6 46 341-386 22-67 (222)
338 PF06156 DUF972: Protein of un 45.8 86 0.0019 29.4 7.2 45 544-588 11-55 (107)
339 PRK04325 hypothetical protein; 45.7 1.2E+02 0.0026 26.5 7.6 45 280-324 6-50 (74)
340 PRK00409 recombination and DNA 45.6 6.9E+02 0.015 31.0 17.3 24 125-148 253-276 (782)
341 PF05529 Bap31: B-cell recepto 44.7 1.3E+02 0.0028 30.3 8.9 37 549-585 155-191 (192)
342 KOG0962 DNA repair protein RAD 44.2 8.9E+02 0.019 31.9 40.4 58 639-696 1202-1263(1294)
343 PRK10803 tol-pal system protei 44.1 1.4E+02 0.003 31.9 9.4 37 347-383 58-94 (263)
344 PF14073 Cep57_CLD: Centrosome 44.0 3.8E+02 0.0082 27.5 20.9 26 306-331 6-31 (178)
345 KOG1899 LAR transmembrane tyro 43.8 6.9E+02 0.015 30.5 21.3 35 435-469 227-261 (861)
346 TIGR03752 conj_TIGR03752 integ 43.7 2.6E+02 0.0056 32.7 11.9 44 343-386 59-102 (472)
347 PF12761 End3: Actin cytoskele 43.5 2.1E+02 0.0045 29.8 10.1 33 493-525 162-194 (195)
348 KOG3091 Nuclear pore complex, 43.3 2.2E+02 0.0047 33.4 11.2 104 449-557 337-444 (508)
349 PF05266 DUF724: Protein of un 42.8 3.9E+02 0.0085 27.4 14.5 41 548-588 145-185 (190)
350 TIGR01069 mutS2 MutS2 family p 42.7 6E+02 0.013 31.5 15.6 6 648-653 743-748 (771)
351 PF15294 Leu_zip: Leucine zipp 42.7 4.9E+02 0.011 28.5 25.0 22 351-372 133-154 (278)
352 PF07099 DUF1361: Protein of u 42.4 46 0.001 33.2 5.2 49 629-677 107-162 (168)
353 PF05278 PEARLI-4: Arabidopsis 42.4 4.5E+02 0.0097 28.7 12.8 30 499-528 222-251 (269)
354 KOG0972 Huntingtin interacting 42.3 5.2E+02 0.011 28.7 16.9 61 277-337 246-306 (384)
355 PF06632 XRCC4: DNA double-str 42.3 4.2E+02 0.009 29.7 13.0 71 280-360 141-211 (342)
356 PF13747 DUF4164: Domain of un 42.2 2.6E+02 0.0057 25.2 11.5 39 342-380 38-76 (89)
357 PRK13169 DNA replication intia 42.1 1.1E+02 0.0023 29.0 7.2 45 544-588 11-55 (110)
358 TIGR02338 gimC_beta prefoldin, 41.9 2.8E+02 0.0061 25.5 13.1 33 341-373 72-104 (110)
359 PRK00846 hypothetical protein; 41.4 2.3E+02 0.0051 25.2 8.8 10 288-297 11-20 (77)
360 PF09727 CortBP2: Cortactin-bi 41.2 4.3E+02 0.0093 27.4 16.3 95 288-382 79-173 (192)
361 PF10226 DUF2216: Uncharacteri 41.2 4.3E+02 0.0094 27.4 12.8 94 253-378 43-136 (195)
362 PF06428 Sec2p: GDP/GTP exchan 41.1 45 0.00097 30.9 4.5 79 301-382 5-83 (100)
363 PF02994 Transposase_22: L1 tr 40.7 88 0.0019 35.1 7.6 38 345-382 146-183 (370)
364 TIGR03752 conj_TIGR03752 integ 40.6 3.4E+02 0.0073 31.8 12.2 37 350-386 59-95 (472)
365 PF04304 DUF454: Protein of un 40.5 60 0.0013 27.4 5.0 47 625-671 22-69 (71)
366 KOG2264 Exostosin EXT1L [Signa 40.5 1.9E+02 0.0041 34.6 10.2 40 544-583 110-149 (907)
367 KOG3647 Predicted coiled-coil 40.4 4.1E+02 0.0089 29.1 11.9 92 409-503 89-180 (338)
368 KOG0837 Transcriptional activa 40.2 1.6E+02 0.0034 31.9 8.9 62 275-337 206-267 (279)
369 COG4477 EzrA Negative regulato 39.8 7.3E+02 0.016 29.7 37.9 29 376-404 212-240 (570)
370 PF10805 DUF2730: Protein of u 39.7 2.4E+02 0.0052 26.1 9.1 32 551-582 68-99 (106)
371 smart00338 BRLZ basic region l 39.5 1.2E+02 0.0026 25.2 6.6 40 341-380 24-63 (65)
372 PF09753 Use1: Membrane fusion 39.4 71 0.0015 33.6 6.4 20 562-581 163-182 (251)
373 PF15035 Rootletin: Ciliary ro 39.4 4.3E+02 0.0094 26.9 18.1 46 435-480 84-129 (182)
374 PF11802 CENP-K: Centromere-as 39.4 5.4E+02 0.012 28.1 17.4 39 251-289 30-69 (268)
375 KOG3457 Sec61 protein transloc 38.8 23 0.0005 32.0 2.2 19 656-674 67-85 (88)
376 PF11365 DUF3166: Protein of u 38.7 1.1E+02 0.0024 28.4 6.5 42 435-476 4-45 (96)
377 KOG1899 LAR transmembrane tyro 38.6 8.2E+02 0.018 29.9 21.0 16 307-322 107-122 (861)
378 KOG2264 Exostosin EXT1L [Signa 38.5 1.3E+02 0.0029 35.8 8.6 45 340-384 90-134 (907)
379 COG1382 GimC Prefoldin, chaper 38.3 3.7E+02 0.0081 25.9 13.3 40 341-380 68-107 (119)
380 PRK00409 recombination and DNA 38.2 8.8E+02 0.019 30.1 17.4 6 648-653 754-759 (782)
381 KOG1962 B-cell receptor-associ 38.1 2.6E+02 0.0057 29.5 10.0 79 309-387 119-209 (216)
382 KOG4421 Uncharacterized conser 38.1 1.1E+02 0.0025 34.5 7.7 69 513-589 16-84 (637)
383 PF11180 DUF2968: Protein of u 38.0 4.8E+02 0.01 27.1 13.7 76 285-371 107-182 (192)
384 PRK00846 hypothetical protein; 37.8 2.7E+02 0.0059 24.8 8.7 45 281-325 11-55 (77)
385 PRK09343 prefoldin subunit bet 37.8 3.6E+02 0.0078 25.5 14.0 30 347-376 82-111 (121)
386 TIGR00414 serS seryl-tRNA synt 37.3 2.6E+02 0.0055 32.0 10.8 74 307-380 33-106 (418)
387 PF06770 Arif-1: Actin-rearran 37.3 38 0.00082 35.0 3.8 29 648-676 164-192 (196)
388 PF08232 Striatin: Striatin fa 37.1 3.5E+02 0.0077 26.1 10.2 46 351-397 19-64 (134)
389 COG4467 Regulator of replicati 36.7 1.2E+02 0.0026 28.8 6.5 45 543-587 10-54 (114)
390 KOG2391 Vacuolar sorting prote 36.3 2.8E+02 0.0061 31.2 10.3 53 323-375 233-285 (365)
391 PRK04406 hypothetical protein; 35.9 3.1E+02 0.0066 24.2 8.6 44 287-330 8-51 (75)
392 PF12004 DUF3498: Domain of un 35.8 12 0.00026 43.5 0.0 43 333-375 423-465 (495)
393 PF13870 DUF4201: Domain of un 35.6 4.5E+02 0.0098 26.0 22.1 65 336-401 56-120 (177)
394 KOG4603 TBP-1 interacting prot 34.8 2.7E+02 0.006 28.5 9.1 58 343-401 79-138 (201)
395 PF14932 HAUS-augmin3: HAUS au 34.4 5.9E+02 0.013 27.0 13.0 133 215-359 19-151 (256)
396 KOG2629 Peroxisomal membrane a 34.4 4.1E+02 0.0088 29.3 11.0 72 294-379 119-190 (300)
397 KOG0163 Myosin class VI heavy 34.0 1E+03 0.023 29.8 16.8 126 248-390 893-1019(1259)
398 PF02185 HR1: Hr1 repeat; Int 33.6 2.6E+02 0.0057 23.6 7.8 58 312-370 2-60 (70)
399 cd00632 Prefoldin_beta Prefold 33.6 3.7E+02 0.008 24.5 13.8 40 341-380 61-100 (105)
400 PF12329 TMF_DNA_bd: TATA elem 33.5 3.3E+02 0.0071 23.8 10.4 21 512-532 5-25 (74)
401 KOG4460 Nuclear pore complex, 33.3 5.9E+02 0.013 30.6 12.6 125 270-395 597-721 (741)
402 KOG0993 Rab5 GTPase effector R 33.3 8.3E+02 0.018 28.4 25.1 51 416-466 439-489 (542)
403 PRK15178 Vi polysaccharide exp 33.0 8.4E+02 0.018 28.4 19.5 35 560-594 349-383 (434)
404 PF06632 XRCC4: DNA double-str 32.8 7E+02 0.015 28.0 12.9 57 348-404 149-205 (342)
405 cd00089 HR1 Protein kinase C-r 32.8 2.6E+02 0.0056 23.8 7.7 66 306-377 4-69 (72)
406 PF05529 Bap31: B-cell recepto 32.5 4.7E+02 0.01 26.2 10.7 21 311-331 118-138 (192)
407 PF06785 UPF0242: Uncharacteri 32.3 7.9E+02 0.017 27.8 21.4 49 430-478 185-233 (401)
408 KOG2398 Predicted proline-seri 32.1 1E+03 0.022 29.0 22.9 51 373-423 52-102 (611)
409 COG3206 GumC Uncharacterized p 31.8 8.2E+02 0.018 27.9 24.3 21 87-107 77-97 (458)
410 KOG0979 Structural maintenance 31.7 1.2E+03 0.027 29.9 37.7 38 549-586 871-912 (1072)
411 PLN02678 seryl-tRNA synthetase 31.5 3.4E+02 0.0074 31.5 10.6 71 309-380 38-108 (448)
412 PF10458 Val_tRNA-synt_C: Valy 31.4 3E+02 0.0065 23.2 7.7 47 356-402 3-62 (66)
413 PF12761 End3: Actin cytoskele 31.3 4.2E+02 0.0091 27.6 10.1 20 461-480 97-116 (195)
414 PF12004 DUF3498: Domain of un 31.3 16 0.00035 42.5 0.0 81 271-358 396-480 (495)
415 PF06428 Sec2p: GDP/GTP exchan 31.1 91 0.002 28.9 4.9 76 320-400 3-79 (100)
416 PF07246 Phlebovirus_NSM: Phle 31.1 7.3E+02 0.016 27.1 12.1 39 345-383 204-242 (264)
417 PF04100 Vps53_N: Vps53-like, 30.5 8.4E+02 0.018 27.6 19.7 80 303-382 24-106 (383)
418 PF04728 LPP: Lipoprotein leuc 30.3 3.2E+02 0.007 23.1 7.4 44 545-588 7-50 (56)
419 PLN02678 seryl-tRNA synthetase 30.3 3.5E+02 0.0075 31.4 10.4 21 629-649 144-167 (448)
420 PF08647 BRE1: BRE1 E3 ubiquit 30.2 4.2E+02 0.0091 24.0 13.0 9 312-320 32-40 (96)
421 PF06548 Kinesin-related: Kine 30.1 9.6E+02 0.021 28.2 27.5 24 510-533 446-469 (488)
422 PF08409 DUF1736: Domain of un 30.1 54 0.0012 29.2 3.1 24 652-675 21-44 (80)
423 PRK05431 seryl-tRNA synthetase 30.0 3.7E+02 0.008 30.8 10.5 72 308-380 32-103 (425)
424 PF07851 TMPIT: TMPIT-like pro 29.8 5.9E+02 0.013 28.5 11.6 53 345-398 6-58 (330)
425 PLN02320 seryl-tRNA synthetase 29.5 3.4E+02 0.0074 32.0 10.2 67 312-380 101-167 (502)
426 KOG0241 Kinesin-like protein [ 29.4 2.3E+02 0.0051 35.9 8.9 65 493-568 366-431 (1714)
427 PF02183 HALZ: Homeobox associ 29.3 2.2E+02 0.0048 22.7 6.1 20 316-335 3-22 (45)
428 TIGR02894 DNA_bind_RsfA transc 29.0 3.1E+02 0.0067 27.7 8.4 48 285-332 99-146 (161)
429 PF08581 Tup_N: Tup N-terminal 28.8 4.2E+02 0.0092 23.6 11.2 7 393-399 64-70 (79)
430 PRK13729 conjugal transfer pil 28.6 2.2E+02 0.0047 33.3 8.3 45 356-401 75-119 (475)
431 KOG4809 Rab6 GTPase-interactin 28.4 1.1E+03 0.024 28.4 31.7 41 342-382 372-412 (654)
432 cd00632 Prefoldin_beta Prefold 28.4 4.6E+02 0.0099 23.9 12.1 23 279-301 9-31 (105)
433 PF14073 Cep57_CLD: Centrosome 28.3 6.7E+02 0.015 25.8 21.3 37 347-383 68-104 (178)
434 KOG4637 Adaptor for phosphoino 28.2 9.6E+02 0.021 27.6 15.3 19 543-561 264-282 (464)
435 TIGR03794 NHPM_micro_HlyD NHPM 28.1 8.9E+02 0.019 27.2 21.1 23 455-477 229-251 (421)
436 PF00170 bZIP_1: bZIP transcri 27.9 3.5E+02 0.0076 22.4 9.6 39 341-379 24-62 (64)
437 PF12329 TMF_DNA_bd: TATA elem 27.6 4.2E+02 0.009 23.1 10.6 28 359-386 35-62 (74)
438 PF04799 Fzo_mitofusin: fzo-li 27.3 4E+02 0.0088 27.2 9.0 26 353-378 140-165 (171)
439 PF04728 LPP: Lipoprotein leuc 27.2 3.6E+02 0.0078 22.8 7.2 39 343-381 10-48 (56)
440 PF07851 TMPIT: TMPIT-like pro 27.2 6.1E+02 0.013 28.4 11.2 19 658-676 264-282 (330)
441 PF06716 DUF1201: Protein of u 27.1 77 0.0017 25.8 3.1 22 660-681 20-43 (54)
442 PF07439 DUF1515: Protein of u 27.1 4.8E+02 0.01 24.9 8.8 17 313-329 10-26 (112)
443 COG3074 Uncharacterized protei 27.0 4.5E+02 0.0097 23.3 10.4 45 342-386 24-68 (79)
444 PF14282 FlxA: FlxA-like prote 26.9 4E+02 0.0087 24.6 8.4 27 558-584 47-73 (106)
445 COG0172 SerS Seryl-tRNA synthe 26.4 4.4E+02 0.0096 30.5 10.2 74 309-382 34-107 (429)
446 COG1730 GIM5 Predicted prefold 26.1 6.6E+02 0.014 24.9 13.8 42 359-401 96-137 (145)
447 PRK10869 recombination and rep 25.9 1.2E+03 0.025 27.8 26.4 36 544-582 344-379 (553)
448 KOG4571 Activating transcripti 25.8 2.2E+02 0.0047 31.3 7.3 18 544-561 272-289 (294)
449 TIGR02449 conserved hypothetic 25.8 4.4E+02 0.0095 22.8 8.9 29 351-379 15-43 (65)
450 PF03962 Mnd1: Mnd1 family; I 25.6 7.3E+02 0.016 25.3 13.4 23 352-374 71-93 (188)
451 TIGR03495 phage_LysB phage lys 25.5 4.1E+02 0.0089 26.1 8.4 35 247-281 22-56 (135)
452 PF13094 CENP-Q: CENP-Q, a CEN 25.4 5.9E+02 0.013 24.8 9.8 23 353-375 30-52 (160)
453 PRK04325 hypothetical protein; 25.3 4.2E+02 0.0091 23.1 7.7 31 345-375 11-41 (74)
454 KOG0860 Synaptobrevin/VAMP-lik 25.2 2.4E+02 0.0052 27.1 6.6 53 624-677 62-114 (116)
455 PF05791 Bacillus_HBL: Bacillu 25.0 6.5E+02 0.014 25.4 10.2 18 222-239 45-62 (184)
456 PF13863 DUF4200: Domain of un 25.0 5.5E+02 0.012 23.7 14.5 101 385-485 6-106 (126)
457 PF12808 Mto2_bdg: Micro-tubul 25.0 1.8E+02 0.0039 24.1 5.0 39 311-349 4-42 (52)
458 PRK10476 multidrug resistance 24.9 9.2E+02 0.02 26.2 17.6 24 307-330 82-105 (346)
459 PF13094 CENP-Q: CENP-Q, a CEN 24.9 5.6E+02 0.012 25.0 9.5 6 292-297 29-34 (160)
460 KOG3850 Predicted membrane pro 24.8 1.1E+03 0.024 27.2 17.9 14 166-179 219-232 (455)
461 COG1382 GimC Prefoldin, chaper 24.4 6.5E+02 0.014 24.3 13.4 52 538-592 56-107 (119)
462 TIGR03545 conserved hypothetic 24.3 1.2E+03 0.026 27.8 13.7 53 352-404 221-273 (555)
463 PF04880 NUDE_C: NUDE protein, 24.3 1E+02 0.0023 31.1 4.3 22 434-455 2-23 (166)
464 PF02841 GBP_C: Guanylate-bind 24.2 9.2E+02 0.02 26.0 17.0 13 274-286 128-140 (297)
465 PRK05431 seryl-tRNA synthetase 24.1 5.4E+02 0.012 29.5 10.5 11 629-639 140-150 (425)
466 TIGR00414 serS seryl-tRNA synt 24.0 5.2E+02 0.011 29.5 10.3 11 629-639 143-153 (418)
467 PF07989 Microtub_assoc: Micro 23.9 5E+02 0.011 22.8 9.0 55 343-398 14-69 (75)
468 PF03915 AIP3: Actin interacti 23.5 1.2E+03 0.026 27.0 17.2 83 290-378 199-281 (424)
469 PRK00736 hypothetical protein; 23.4 4.7E+02 0.01 22.5 7.5 17 346-362 8-24 (68)
470 COG4985 ABC-type phosphate tra 23.1 9.7E+02 0.021 25.9 11.3 46 435-480 160-206 (289)
471 PF05663 DUF809: Protein of un 23.1 72 0.0016 29.7 2.7 19 654-672 24-42 (138)
472 TIGR02449 conserved hypothetic 23.0 5E+02 0.011 22.5 9.0 38 295-332 5-42 (65)
473 PTZ00464 SNF-7-like protein; P 22.9 8.8E+02 0.019 25.3 15.9 20 278-297 20-39 (211)
474 KOG4687 Uncharacterized coiled 22.8 1.1E+03 0.023 26.2 13.0 50 431-480 15-64 (389)
475 PF01920 Prefoldin_2: Prefoldi 22.8 5.3E+02 0.012 22.7 12.4 80 293-380 1-99 (106)
476 PRK13729 conjugal transfer pil 22.8 2.8E+02 0.0061 32.5 7.8 56 299-365 71-126 (475)
477 PRK00753 psbL photosystem II r 22.7 86 0.0019 24.4 2.5 16 661-676 19-34 (39)
478 PTZ00491 major vault protein; 22.6 1.6E+03 0.036 28.3 16.1 133 401-571 654-789 (850)
479 PF06156 DUF972: Protein of un 22.5 4.4E+02 0.0095 24.7 7.7 49 343-392 8-56 (107)
480 PRK02793 phi X174 lysis protei 22.4 5.2E+02 0.011 22.5 8.1 51 287-337 5-55 (72)
481 PF12240 Angiomotin_C: Angiomo 22.3 9.1E+02 0.02 25.4 10.6 94 498-592 6-100 (205)
482 PF14389 Lzipper-MIP1: Leucine 22.2 3.1E+02 0.0066 24.7 6.5 81 302-382 6-86 (88)
483 PF08647 BRE1: BRE1 E3 ubiquit 22.2 6E+02 0.013 23.1 13.6 95 281-386 1-95 (96)
484 PRK03947 prefoldin subunit alp 22.0 6.8E+02 0.015 23.7 14.0 94 296-394 5-137 (140)
485 KOG3385 V-SNARE [Intracellular 21.8 3.6E+02 0.0079 25.9 7.0 98 536-672 20-117 (118)
486 PRK03947 prefoldin subunit alp 21.7 6.9E+02 0.015 23.7 14.0 94 282-379 5-137 (140)
487 KOG1962 B-cell receptor-associ 21.7 9.7E+02 0.021 25.4 14.6 112 290-403 85-210 (216)
488 PF03915 AIP3: Actin interacti 21.7 1.3E+03 0.028 26.8 18.4 148 312-467 152-320 (424)
489 PF06657 Cep57_MT_bd: Centroso 21.6 5.7E+02 0.012 22.6 8.2 64 300-369 13-76 (79)
490 PRK11546 zraP zinc resistance 21.2 8.2E+02 0.018 24.3 10.2 63 317-379 49-118 (143)
491 KOG2302 T-type voltage-gated C 20.6 1E+02 0.0022 39.0 3.9 33 642-674 176-223 (1956)
492 PF14257 DUF4349: Domain of un 20.6 6.7E+02 0.015 26.3 9.7 80 293-381 105-193 (262)
493 PF14282 FlxA: FlxA-like prote 20.5 6.8E+02 0.015 23.1 8.6 62 512-577 19-80 (106)
494 TIGR03545 conserved hypothetic 20.4 1.5E+03 0.033 27.1 13.9 98 325-423 164-270 (555)
495 PRK10476 multidrug resistance 20.2 1.1E+03 0.024 25.5 17.8 118 306-439 81-201 (346)
496 TIGR00998 8a0101 efflux pump m 20.1 1.1E+03 0.023 25.2 18.7 125 306-442 75-203 (334)
497 PF05377 FlaC_arch: Flagella a 20.1 3.8E+02 0.0081 22.6 6.0 42 337-378 1-42 (55)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=100.00 E-value=4e-33 Score=313.49 Aligned_cols=371 Identities=26% Similarity=0.348 Sum_probs=254.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 271 EARLARVCAGLSSRLQEYKSENAQLEELLVA--------------ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (701)
Q Consensus 271 e~qLa~~~~RLrk~~~elksr~aqLEell~e--------------l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~e 336 (701)
.+++++++++|.+..++++....+|+++-++ +....+.|.+++..|+.++......+......|..
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 4499999999999999999999999997111 11124888889999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHH-H
Q 005339 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------TETRMIQALREELASVERRAEE-E 405 (701)
Q Consensus 337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----------~ekeilqSLE~eLkslq~~le~-E 405 (701)
+...++..+..|+.+.. +...+........+++...+.++..... ++..+++++++.|.+|+.+... .
T Consensus 188 rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~ 266 (511)
T PF09787_consen 188 RTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG 266 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 99999999999999888 4456666666777776666665555544 3788999999999999984333 1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCh
Q 005339 406 RAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484 (701)
Q Consensus 406 ~~aH~a-Tr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~ 484 (701)
...+.. +..+. |..+..-+.+-+..++..+.+-+.++.+++.++. .+.+.+++..+.+.........+
T Consensus 267 ~~~~~~~~el~~------l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 335 (511)
T PF09787_consen 267 FDSSTNSIELEE------LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE---GEQESFREQPQELSQQLEPELTT-- 335 (511)
T ss_pred cccccchhcchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhch--
Confidence 221111 11111 2222222223333444444444444433333222 22233333333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339 485 EEANQAIQMQAWQDEVERARQG----QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (701)
Q Consensus 485 ~ea~q~~qLk~lkeEL~~lRq~----qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK 560 (701)
++ +++-...|+..+++. ...+..++...+.|+++|+.++...- ...+..++|.||+.||+.|++|
T Consensus 336 -e~----e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~K 404 (511)
T PF09787_consen 336 -EA----ELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQK 404 (511)
T ss_pred -HH----HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHH
Confidence 11 122233344333322 23456788889999999999986633 1233579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCcccccchhcccCCCccc-cccchhhhHHHHHHHhH
Q 005339 561 QTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLH-HRHIAGASVQLQKAAKL 637 (701)
Q Consensus 561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr~sr~~--~~~~~dd~~~~~~~p~~~~-~~~~~~~~rrvk~Aa~~ 637 (701)
|+++|.|.+||++|.+|||++...+++ . ....+.++.. ++.|.+|.. ...|.++. .+|++++++||++||++
T Consensus 405 Q~~lE~l~~ek~al~lqlErl~~~l~~-~--~~~~~~~~~~~~~~~~~~d~~--~r~~~~~~~~~~d~~~~~r~~~a~~~ 479 (511)
T PF09787_consen 405 QTQLESLGSEKNALRLQLERLETQLKE-E--ASNNRPSSILMKYSNSEDDAE--SRVPLLMKDSPHDIGVARRVKRAASV 479 (511)
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHHh-h--ccCCCCchhhHhhccCCCchh--hhhhhhccCCCccchHHHHHHHHHHH
Confidence 999999999999999999999999986 1 1112222222 223444433 33555444 45677899999999999
Q ss_pred HhhhhHhHhHhhhcchhHHHHHHHHHHHHHHH
Q 005339 638 LDSGAVRATRFLWRYPIARIILLFYLVFVHLF 669 (701)
Q Consensus 638 lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLW 669 (701)
||+|+||+|+||||||++|+||||||++||||
T Consensus 480 iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 480 IDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred HhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=4.1e-30 Score=275.44 Aligned_cols=378 Identities=15% Similarity=0.139 Sum_probs=248.4
Q ss_pred CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
+|+.....-+.+ ..+..++.-..|++|| ++||++..+.++.++..||.. .-...|++++.-+++.+.+.+
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~ 226 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD 226 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 444444333333 5677888899999999 999999999999999999996 345678889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHhhh---HHHHHHHHHHHHHH
Q 005339 325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES-----IMRNREL---TETRMIQALREELA 396 (701)
Q Consensus 325 ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r-----l~e~l~~---~ekeilqSLE~eLk 396 (701)
+.+.++...|..++-.++.++.++.+-++-+...+-..|.++.+.+...+- .++++.+ .+..|+++.++
T Consensus 227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k--- 303 (554)
T KOG4677|consen 227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK--- 303 (554)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc---
Confidence 999999999999999999999999999999999999999999998888665 2333333 25555555553
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHH
Q 005339 397 SVERRAEEERAAHN-----ATKMAAMEREVELEHRAAEASMALARIQRIADERTA----KAGELEQKVAMLEVECATLQQ 467 (701)
Q Consensus 397 slq~~le~E~~aH~-----aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~a----ea~eLeqQls~LE~ElkqLkQ 467 (701)
+.-.+.+.|...|- +--..++.+...|..+..++..-.-.++..+.+++. +-..+..-...|+.+++-+++
T Consensus 304 stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~ 383 (554)
T KOG4677|consen 304 STASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYH 383 (554)
T ss_pred chhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHH
Confidence 11111112111110 000111112222222211111111111111111110 001111111123444445555
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHH
Q 005339 468 ELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 547 (701)
Q Consensus 468 eLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE 547 (701)
+.++.+....|...+ ...+|-..+.++++|+++++. + + -......++
T Consensus 384 e~e~~~~~~~r~~~~---------------------------~qski~dk~~el~kl~~~l~~-r--~---~~~s~~~l~ 430 (554)
T KOG4677|consen 384 ETEAEGTFSSRVNLK---------------------------KQSKIPDKQYELTKLAARLKL-R--A---WNDSVDALF 430 (554)
T ss_pred HHHHhhhhhhhccch---------------------------hhccCcchHHHHHHHHHHHHH-H--h---hhhhHHHHh
Confidence 555555555544322 234555667777777776532 1 0 001247788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccccchhcccCCCccccccchhh
Q 005339 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGA 627 (701)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr~sr~~~~~~~dd~~~~~~~p~~~~~~~~~~~ 627 (701)
++.+.||+.|++||.+++.+..+++.|.++||+++...- .+ +-....+++.+.+......+..++.+-.+
T Consensus 431 ~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N--~~--------~~v~~~~~~n~~~~~~~~v~~l~~d~~~~ 500 (554)
T KOG4677|consen 431 TTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN--LV--------EDVDTKLNLNTKFKCHDVVIDLYRDLKDR 500 (554)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc--cc--------cccceeeccCCCcccccccchHhhhhhhh
Confidence 999999999999999999999999999999999875431 10 11122333433333333344445554444
Q ss_pred hHHHHHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhch
Q 005339 628 SVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE 679 (701)
Q Consensus 628 ~rrvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~ 679 (701)
.++++|++.||+|++++|.|||+||.||||+++||++|||||||||++|||
T Consensus 501 -~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYTP 551 (554)
T KOG4677|consen 501 -QQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYTP 551 (554)
T ss_pred -HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 899999999999999999999999999999999999999999999999999
No 3
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=8.6e-12 Score=147.78 Aligned_cols=311 Identities=15% Similarity=0.160 Sum_probs=238.1
Q ss_pred hhhcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (701)
Q Consensus 239 ~~~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQa 318 (701)
..-.++|.+++.++|++++..+++|++. +.+|++..+++.+++.++++..+.+.+++..|+.....|-.
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~ 602 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK 602 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999995 99999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Q 005339 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS 397 (701)
Q Consensus 319 eL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek-eilqSLE~eLks 397 (701)
+...++........ ........+.+++.++..|+......+..+.+++...+..++.++++++ .+..-++.+++.
T Consensus 603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~ 678 (1317)
T KOG0612|consen 603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678 (1317)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665555444 2233567788999999999999999999999999988888888888877 446677799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ 470 (701)
Q Consensus 398 lq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~-------aea~eLeqQls~LE~ElkqLkQeLq 470 (701)
+++.++++..+|+.++.. .+ ...+++++..+.+++ +.+..+..++++|.+++.+.++.++
T Consensus 679 ~q~~~eq~~~E~~~~~L~--~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 679 LQNELEQENAEHHRLRLQ--DK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 999999999999988332 22 455677777777777 3346788999999999999999988
Q ss_pred HHHHHHHhcccCChHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH-----------
Q 005339 471 DMEARLKRGQKKSPEEANQAIQ-----------MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM----------- 528 (701)
Q Consensus 471 ~lE~e~~r~qek~~~ea~q~~q-----------Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~----------- 528 (701)
.++.........+.....++++ |+....++++ +.++.+..++..++..+++++
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~ 820 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENAQLRGLN 820 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8888777776555544443332 2222233332 334445555555555554443
Q ss_pred -------HHhhhhh--hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 529 -------AAMKRDA--EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 529 -------~~Lk~ql--e~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
+.++.++ ++|| ...|++++.+..+...++. ++++.|+..+..|.+.+.+.+++.
T Consensus 821 ~~~~~~~k~lq~~leae~~~---~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~ 883 (1317)
T KOG0612|consen 821 RSAWGQMKELQDQLEAEQCF---SSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE 883 (1317)
T ss_pred ccchhhhHHHHHHHHHHHHH---HHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence 3455555 3344 7889999999999999997 889999999999999888777665
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.27 E-value=4.1e-09 Score=119.21 Aligned_cols=143 Identities=14% Similarity=0.204 Sum_probs=89.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 301 el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
..+++...++..+..||..+..-+..+...++.+.+..+++.+++.-+...+..++..+..+..+.+.+..+......+.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44455666777888888888888988999998888888889998888877666666666666665555555543332222
Q ss_pred h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 381 E-------LTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (701)
Q Consensus 381 ~-------~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeE 443 (701)
. +.....+..++.++..|=..+.....+|...+..-......|+.++..+...+.++..+|+.
T Consensus 273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 12334455566666666666665555555555544445555555554444444444444443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.95 E-value=4.3e-05 Score=93.45 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005339 668 LFLMYLL 674 (701)
Q Consensus 668 LWV~~VL 674 (701)
-++.|+|
T Consensus 614 ~~~~~~l 620 (1164)
T TIGR02169 614 PAFKYVF 620 (1164)
T ss_pred HHHHHHC
Confidence 3344433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.94 E-value=2.5e-05 Score=95.49 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.7
Q ss_pred hHhhhcc
Q 005339 646 TRFLWRY 652 (701)
Q Consensus 646 g~fLRRy 652 (701)
-.||+.+
T Consensus 564 i~~l~~~ 570 (1164)
T TIGR02169 564 IELLKRR 570 (1164)
T ss_pred HHHHHhc
Confidence 3344433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=3.7e-05 Score=93.55 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (701)
Q Consensus 520 elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (701)
++..|+.++..|...++.|-.. ......|+..|..++......++.|...+..+....
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~-~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~ 1023 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPV-NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555444321 111224555555555555555555554444444333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=5e-05 Score=92.47 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL 574 (701)
..|..|+..|...+..-...+..+..+...+
T Consensus 996 ~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~ 1026 (1179)
T TIGR02168 996 EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.87 E-value=0.00015 Score=82.96 Aligned_cols=87 Identities=25% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (701)
Q Consensus 498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (701)
.+|.++......++..+.....+.++|+.++...++. ..+--.+..+.|.+|...|.--|..-|.|..|+.-|..-
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~y 446 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEY 446 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555667778888887655542 222345666777788887777777788888888888888
Q ss_pred HHHHHHHHHHH
Q 005339 578 LEKEMNRLQEV 588 (701)
Q Consensus 578 LE~~~~~~~~~ 588 (701)
.+++..|++..
T Consensus 447 i~~Le~r~~~~ 457 (546)
T PF07888_consen 447 IERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.87 E-value=0.00011 Score=93.90 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCh
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~ 484 (701)
..++..+.+......++..++...+.++-+++.++++....+...++...
T Consensus 1051 ~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333334444444555555555555555555555555555555554433
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.85 E-value=4.2e-05 Score=97.39 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=79.6
Q ss_pred CCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 243 DDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 243 ~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
+.|.++.-+.+++.++.|.+.+.....|-.+|...+.+|...+.++.....+=.. ..-.++..+..|+.+|..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~-------~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR-------IRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444444455555555554444444333222222 222233344445555544
Q ss_pred HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh------HHHHHHHHHHH
Q 005339 323 YKSEVT---KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL------TETRMIQALRE 393 (701)
Q Consensus 323 EQ~~l~---q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~------~ekeilqSLE~ 393 (701)
.|+... .....+...+..+..++..|..++......+..+...+.+++....-|.+++.. +.++...-|..
T Consensus 1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ 1132 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE 1132 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 222355556666666666666666666666665555555555555555555554 12333666666
Q ss_pred HHHHHHHHHHHH
Q 005339 394 ELASVERRAEEE 405 (701)
Q Consensus 394 eLkslq~~le~E 405 (701)
+|..++.+++..
T Consensus 1133 ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1133 ELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 677777666654
No 12
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=98.84 E-value=4.8e-08 Score=101.89 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=45.3
Q ss_pred HHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005339 632 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ 680 (701)
Q Consensus 632 k~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~~ 680 (701)
..-++.+|++.+.+|+|+..++.+|.|||||+|+||+|||++|+.+.+.
T Consensus 195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~ 243 (248)
T PF08172_consen 195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS 243 (248)
T ss_pred HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6668899999999999999999999999999999999999999986554
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.00087 Score=80.86 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=7.2
Q ss_pred ChhhhhhHHHHHHHHHh
Q 005339 246 PTKEQDQLDEAQGLLKT 262 (701)
Q Consensus 246 ~~~lqkQLee~n~~Lrs 262 (701)
+..++..+.++...+..
T Consensus 208 l~~~~~~l~el~~~i~~ 224 (880)
T PRK02224 208 LNGLESELAELDEEIER 224 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.00081 Score=81.11 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHh
Q 005339 516 SLEAEVQKMRVEMAAM 531 (701)
Q Consensus 516 slE~elqkLr~e~~~L 531 (701)
.+..++..++.++..+
T Consensus 624 ~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 624 ERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.62 E-value=0.0018 Score=80.87 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=44.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALK 356 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~-es~~~eaLsak~~eie~Le~rl~~Le 356 (701)
..++..-..++..+...|+.. .+.-.+...|..++..++..+...+-..... -..+.+.++.....+.++...+....
T Consensus 188 l~~~~~~~~el~~~l~~L~~q-~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQ-AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE 266 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555542 1222233444444444444333222111111 12344444445555555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 005339 357 KQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 357 ~el~~~K~rleele~E~~rl 376 (701)
.++..++.++.++..+...+
T Consensus 267 ~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 267 KEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.59 E-value=0.00066 Score=81.01 Aligned_cols=71 Identities=20% Similarity=0.366 Sum_probs=53.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 511 e~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
...|...+.++..+..++..+-.+ ..++..+|.-|.+.|..|+...+-|.+++.+|.++|+...+.+..-.
T Consensus 293 ~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 293 KLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445666677777766554432 36778899999999999999999999999999999998877665544
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=0.0011 Score=83.63 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (701)
.++..++..|+-.-.....++..|..+...|..+|
T Consensus 1057 ~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1057 QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555554
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.56 E-value=0.0019 Score=80.71 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (701)
.+.++.+.+.....+.+.+...+..|.-.++.+....+
T Consensus 971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196 971 EYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666555544433
No 19
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.56 E-value=0.0021 Score=78.30 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Q 005339 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA--------- 360 (701)
Q Consensus 290 sr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~--------- 360 (701)
.++.-.++.+....++.+.|.+.+.+++.+|...|....+.... +.....+...|.....-+..+..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~ 569 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDAGKLRKHS 569 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence 33333444444444455555555555555555554444443321 11223333333332222222222
Q ss_pred -HHHhHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 361 -LSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (701)
Q Consensus 361 -~~K~rleele~E~~rl~e~l~~~eke--ilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael 437 (701)
.....+.....+.+.+.+.+.+++.. .+.-..+.+.+.....-.....|.....++..+..+|++.+.....-+...
T Consensus 570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 22222222222333444444443322 222222333333333333344555556666666666666652222222222
Q ss_pred HHHHHHHH-HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 438 QRIADERT-AKAGELEQ--KVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 438 QrkLeEe~-aea~eLeq--Qls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
+. +..+. ....+.++ .-..++..++.+.++++.+..+.+++
T Consensus 650 ~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 650 EE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111 11122222 11223455556666666666666666
No 20
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.56 E-value=0.0014 Score=77.64 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (701)
Q Consensus 249 lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~ 328 (701)
|.-|+.++..+|.+=- .+-++.+.||++ +..++-.+++|++ --..+......||.+|.+.+-+..
T Consensus 229 Lr~QvrdLtEkLetlR-------~kR~EDk~Kl~E-lekmkiqleqlqE-------fkSkim~qqa~Lqrel~raR~e~k 293 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLR-------LKRAEDKAKLKE-LEKMKIQLEQLQE-------FKSKIMEQQADLQRELKRARKEAK 293 (1243)
T ss_pred HHHHHHHHHHHHHHHH-------hhhhhhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556655555554321 122234666654 2334444444444 334455667778888877777666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 329 q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
..+. .-+.-..++.++.+.+..+.-+-...+.|.+.+|.+...++++++.++..
T Consensus 294 eaqe----~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 294 EAQE----AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 22224455666665555544454555566666666666666665555544
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.55 E-value=6.1e-05 Score=78.03 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=59.4
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 505 q~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
.....++.++..++.++..+.+.++.|.-..+.++ .....|+.+|+.|++.|.+-..+++..+.....|..++..+...
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~-~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~e 212 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKAS-EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDE 212 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666666665554443333 55688999999999999999999998888888888888888776
Q ss_pred HHHH
Q 005339 585 LQEV 588 (701)
Q Consensus 585 ~~~~ 588 (701)
+...
T Consensus 213 L~~~ 216 (237)
T PF00261_consen 213 LEKE 216 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.0018 Score=81.86 Aligned_cols=20 Identities=0% Similarity=-0.011 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005339 554 TDLLYYKQTQLETMASEKAA 573 (701)
Q Consensus 554 tE~L~eKQ~qlE~L~~Er~s 573 (701)
..++.....++..|.+.++.
T Consensus 1053 ~~e~~~l~~~~~~l~~~~a~ 1072 (1311)
T TIGR00606 1053 KQEHQKLEENIDLIKRNHVL 1072 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.53 E-value=0.00045 Score=79.10 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (701)
Q Consensus 496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle---~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (701)
..+||...|.....|..++..+|.....|.+++..|+.++. ..|...-.+.+..|..|+++|...-..++.|-.=+-
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki 373 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKI 373 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHh
Confidence 34666666666666667776666666666666666665541 123333466677778888888777777777777777
Q ss_pred HHHHHHHHH
Q 005339 573 AAEFQLEKE 581 (701)
Q Consensus 573 sL~~qLE~~ 581 (701)
+|...+..-
T Consensus 374 ~Ld~EI~~Y 382 (546)
T KOG0977|consen 374 SLDAEIAAY 382 (546)
T ss_pred HHHhHHHHH
Confidence 766665543
No 24
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.47 E-value=0.0067 Score=69.90 Aligned_cols=88 Identities=28% Similarity=0.356 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (701)
Q Consensus 495 ~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL 574 (701)
..+.++..+++.-......+.+++.++.+++.++...+...... ......+-..|..++.+..+-...++....|..-+
T Consensus 320 ~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~-k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~ 398 (522)
T PF05701_consen 320 KEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA-KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKA 398 (522)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666677777777777765544322110 01234556667777766666555555555555555
Q ss_pred HHHHHHHHH
Q 005339 575 EFQLEKEMN 583 (701)
Q Consensus 575 ~~qLE~~~~ 583 (701)
...++.+..
T Consensus 399 k~E~e~~ka 407 (522)
T PF05701_consen 399 KEEAEQTKA 407 (522)
T ss_pred HHHHHHHHH
Confidence 444444433
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.46 E-value=0.00022 Score=73.86 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=134.9
Q ss_pred CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
|+..++.++|++...+..--..|...+. ...+.......+..++..||+-|....+++.....++..++..+....
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~----~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEK----RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555443322111111 233455566677777888888777777777778888888888888887
Q ss_pred HHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (701)
Q Consensus 325 ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (701)
..+..+++ ...+++...+..+.........++..+.....++.-++.++.++-++....+.+ +..|+.+|..+.+.
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~ 156 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 77777775 333444445555555555555566666666666666677777776666666666 67777777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 402 le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
+. ........+..|+..++..+..|..-+.++....+..-.++..|+.++..|+.++...+.+...+..++..
T Consensus 157 lk----~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 157 LK----SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 22233445555666666666555555555555555555555555555555555555555555444444433
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=98.45 E-value=0.011 Score=71.41 Aligned_cols=27 Identities=11% Similarity=0.485 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339 451 LEQKVAMLEVECATLQQELQDMEARLK 477 (701)
Q Consensus 451 LeqQls~LE~ElkqLkQeLq~lE~e~~ 477 (701)
+..++..+......++..+..++..+.
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=98.43 E-value=0.012 Score=71.06 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.3
Q ss_pred hhhcchhHHH
Q 005339 648 FLWRYPIARI 657 (701)
Q Consensus 648 fLRRyP~aRl 657 (701)
++.--|++.+
T Consensus 816 lilDEp~~~l 825 (880)
T PRK03918 816 LILDEPTPFL 825 (880)
T ss_pred EEEeCCCccc
Confidence 3444444444
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.42 E-value=0.0091 Score=76.11 Aligned_cols=100 Identities=13% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (701)
Q Consensus 270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le 349 (701)
.+.=+.+.-..|++....+++.+..++.-+.-..++...|...+..+.++.......+..++ ..+...+..+..+.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~----~~i~~~~q~~~~~s 730 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQ----STISKQEQTVHTLS 730 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34445555666667777777777777776666667777777777766666665554444433 34445566666777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~ 373 (701)
..+..+...++.+...++.+-.|+
T Consensus 731 ~eL~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 731 QELLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776663
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.40 E-value=0.0095 Score=68.57 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~ 321 (701)
.+|.+++++..+... |......|++....++.++..|+..|...++.+..|......+.....
T Consensus 140 ~lQ~qlE~~qkE~ee-----------L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e 202 (546)
T PF07888_consen 140 LLQNQLEECQKEKEE-----------LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSE 202 (546)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888876544322 333567777777888888888888777777777777665555544433
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.35 E-value=0.015 Score=68.46 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 449 ~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
.-|...++..++-++.++.+|+.++.-..+.-
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455556666666666666665544443
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.33 E-value=0.01 Score=71.11 Aligned_cols=124 Identities=23% Similarity=0.345 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLV 349 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~-------rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le 349 (701)
.|+..+..-.+.+..||..|+.+.+-...|+. ....+..+|...+.....+++ ...-.|+.++.++..|.
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666666665555554544 345555566666666666663 45556778888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (701)
.++..+......++..++.+..++......-+.+... +..|+++|......++.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd-ve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD-VEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777777777 77777776666655543
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.33 E-value=0.025 Score=71.16 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLET 566 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~ 566 (701)
..|+.++..+...|...+...+.
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~ 625 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEE 625 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555454444444433333
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.32 E-value=0.015 Score=74.13 Aligned_cols=92 Identities=23% Similarity=0.318 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek 385 (701)
-..++.+|..|+.+|...+..+....+.+.+-....+-.+.+....+..+..++......+..++.....+...++.+.+
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555789999999999998888888777777777777788888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHH
Q 005339 386 RMIQALREELASV 398 (701)
Q Consensus 386 eilqSLE~eLksl 398 (701)
+ +.+.......+
T Consensus 880 ~-l~~~~~~~~~l 891 (1822)
T KOG4674|consen 880 R-LKSAKTQLLNL 891 (1822)
T ss_pred H-HHHhHHHHhhc
Confidence 7 55554443333
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.27 E-value=0.018 Score=73.51 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=140.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005339 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (701)
Q Consensus 277 ~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le 356 (701)
..++.+++..+..+.....|..+.+..+....+..++..|+.+....+.-+...+. +. .....+..+...+..+.
T Consensus 287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~l----r~q~ei~~l~~~LeELe 361 (1486)
T PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-AL----RQQEKIERYQADLEELE 361 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777778888888877776654333332 11 11233334444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005339 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA--------- 427 (701)
Q Consensus 357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~--------- 427 (701)
.++......++++..+...+..++...+.+ +..++..+..+++.+..-... ..........++.+.
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~e----l~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTR----AIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 444444444444444444444444444444 444444444433333321111 111111222233321
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH-HH--H------HHHHHH
Q 005339 428 -AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN-QA--I------QMQAWQ 497 (701)
Q Consensus 428 -aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~-q~--~------qLk~lk 497 (701)
.+|...+...+.++.+....+.++++++.+++..++++++....+.... .++.-..+ .. + +.+.+-
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~----Gkv~~~~a~~~~~~~~~~~~~~~~~~ 512 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIA----GEVSRSEAWDVARELLRRLREQRHLA 512 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455556666666666667777777777777766666665554433222 22222111 00 0 111111
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (701)
Q Consensus 498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (701)
.-+..+|.+..+|+.++. .....+++-.+... .+...+ .....++.=..++...+..-....+++...+..++.+
T Consensus 513 ~~~~~~~~~~~~l~~~~~-~q~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 587 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLR-QQQRAERLLAEFCK---RLGKNL-DDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587 (1486)
T ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222333222222 11112222222111 111101 1234444444555555555566666677777777777
Q ss_pred HHHHHHHHHHH
Q 005339 578 LEKEMNRLQEV 588 (701)
Q Consensus 578 LE~~~~~~~~~ 588 (701)
++.+..++...
T Consensus 588 ~~qL~~~i~~l 598 (1486)
T PRK04863 588 LEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.25 E-value=0.024 Score=66.83 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005339 373 MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER----EVELEHRAAEASMALARIQRIADERT--- 445 (701)
Q Consensus 373 ~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~R----e~eLEee~aeLseALaelQrkLeEe~--- 445 (701)
++.++-..+-+.++ +.-++...+.++..++.+.+. +..+..+ -.-++.++-.+..-.+.++..|-|++
T Consensus 272 m~qlk~kns~L~~E-lSqkeelVk~~qeeLd~lkqt----~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~ 346 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDE-LSQKEELVKELQEELDTLKQT----RTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKA 346 (1265)
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334555 555666666666665554432 2111111 11123333334444445555555555
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 446 ----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 446 ----aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
.+..+|+++..|+..+...+++.+...+.++.++.
T Consensus 347 egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 347 EGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45579999999999999999999988888888775
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0046 Score=72.45 Aligned_cols=146 Identities=15% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH---
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA--- 495 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~--- 495 (701)
++..|.....+|+.-|....-.+.-.+.+++++..++..+-.+..+++++|+++...+-++-......-.++-+...
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~ 524 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK 524 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 33444444445555555555556666666677777777776777777777766666555543211111111111111
Q ss_pred ----HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 005339 496 ----WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-E 570 (701)
Q Consensus 496 ----lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~-E 570 (701)
.+.+|+.++..+..++.. +++.+..|.++...-..+ ..-+..++.+|++.+..+|.+.+.+-. |
T Consensus 525 ~~~~~~s~L~aa~~~ke~irq~---ikdqldelskE~esk~~e--------idi~n~qlkelk~~~~~q~lake~~yk~e 593 (1118)
T KOG1029|consen 525 ETTQRKSELEAARRKKELIRQA---IKDQLDELSKETESKLNE--------IDIFNNQLKELKEDVNSQQLAKEELYKNE 593 (1118)
T ss_pred CcchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234454444443333332 223333333333221111 244567888888888888877777665 5
Q ss_pred HHHHH
Q 005339 571 KAAAE 575 (701)
Q Consensus 571 r~sL~ 575 (701)
+.-+.
T Consensus 594 ~d~~k 598 (1118)
T KOG1029|consen 594 RDKLK 598 (1118)
T ss_pred HHHHH
Confidence 55554
No 37
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.23 E-value=0.033 Score=67.30 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 308 SYEARIKQLEQELSVYKSEVTKVES---NLAEAL--AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaL--sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
.+.+|+..|...-...+++...++. .+..+. .+.+.+|=.|...+..|..+......+++++..|+..++=.-..
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq 340 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ 340 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677777666666666655554 222222 34556666777777777777777788888888886665433222
Q ss_pred H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 005339 383 T----------------ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEH----------RAAEASMALAR 436 (701)
Q Consensus 383 ~----------------ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEe----------e~aeLseALae 436 (701)
+ +..-++.....|.+ -..+..+...|+-|..=-+.+..+.|+ +..-|+.-..+
T Consensus 341 L~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~ 419 (1195)
T KOG4643|consen 341 LDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI 419 (1195)
T ss_pred hhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence 1 11212222233433 235666666666654433333333332 22333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhhh
Q 005339 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERARQGQRDAENKLS 515 (701)
Q Consensus 437 lQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~q-Lk~lkeEL~~lRq~qr~le~kL~ 515 (701)
++..+.+......+|+.-..+|-.+.+.+.++......-+.+.+ ...++-.+... ..-+..+.+.++.+...+-..|.
T Consensus 420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~-~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~ 498 (1195)
T KOG4643|consen 420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQS-LENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN 498 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445554444555555555555544443333331 11111111110 11133344444444444544555
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (701)
Q Consensus 516 slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~ 581 (701)
....++.++-+....++.|+ .....++..+...|.+....+-.++.|++.|.-|+..+
T Consensus 499 ~r~~elsrl~a~~~elkeQ~--------kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 499 NRDLELSRLHALKNELKEQY--------KTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55555555555555555544 12222333334444444444444444444444444433
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.022 Score=69.73 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
.+|..+...+..+.+++.+.+.++.++++++..++ .+++.+++++++.-..+.........|.
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~---------------~~~~~~rqrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLK---------------SQLNKLRQRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 33444444444444555566777777777664433 3556777777776666666555554443
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.21 E-value=0.014 Score=62.21 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh---cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH---YSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~---~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~ 569 (701)
+...+.|+..+|.....+...|.++......|...+..+...+.. -+...-..++..+..|+..+.......+.|..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666665554433300 01112345555555555555555555555555
Q ss_pred HHHHHHH
Q 005339 570 EKAAAEF 576 (701)
Q Consensus 570 Er~sL~~ 576 (701)
-+-+|..
T Consensus 291 ~K~~Ld~ 297 (312)
T PF00038_consen 291 VKLALDA 297 (312)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 4444433
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.17 E-value=0.0019 Score=76.67 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 330 ~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.+.+++.+++...+--..+...|..+..+...+..++..+...+++=++.+..+|++
T Consensus 440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554444444445666666666666666666666666665544444444444
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.17 E-value=0.015 Score=69.17 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (701)
Q Consensus 361 ~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq 399 (701)
.+|.|..+++.|.++|..++-.++.+ +..++.++..++
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr 579 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 46667777777777777777766666 666666654433
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.13 E-value=0.058 Score=69.13 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e 527 (701)
+.++.++.....+....++.++..+...+.++...
T Consensus 567 ~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555666666666666665
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.09 E-value=0.017 Score=66.46 Aligned_cols=279 Identities=19% Similarity=0.246 Sum_probs=160.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEAR--------IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~r--------l~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~r 351 (701)
-|-.++.-|--+++.||..++.|..-...|+.. ..--+.++...+..+... ...+..++..
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~-----------~~~ra~~e~e 114 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET-----------ARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 344455555556666666666555555444441 112233333322222222 2234466777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLs 431 (701)
+..|..++..++.++++.+........++.+.... +..++.+++.++.+... ...-+..|-.++.-+-
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLR 182 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhH
Confidence 88888888888888888888888888777777777 77777777766655432 2224455566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhcc-cCChHH-HHH-HHHHHHHHHHHH---
Q 005339 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPEE-ANQ-AIQMQAWQDEVE--- 501 (701)
Q Consensus 432 eALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk----QeLq~lE~e~~r~q-ek~~~e-a~q-~~qLk~lkeEL~--- 501 (701)
..|..+.+.++.+..--.++.-+++.|..++.-++ ++|......+.+-- ...... .++ ...|+.+..+.+
T Consensus 183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~ 262 (546)
T KOG0977|consen 183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS 262 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888666666667777766666665 45544444444433 111111 000 011222222221
Q ss_pred -HHHHhHHHH-HHhhhhH--------------HHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHH---------
Q 005339 502 -RARQGQRDA-ENKLSSL--------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL--------- 556 (701)
Q Consensus 502 -~lRq~qr~l-e~kL~sl--------------E~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~--------- 556 (701)
+-|+..+.. ..+|... .+++..+|..+..|+-++.... .....|+++|..|.-+
T Consensus 263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e 341 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFE 341 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhh
Confidence 111111111 2333323 3566666666666665552221 2356777888877766
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 557 --LYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 557 --L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
|..|.+.+..|..|...|..+|+.+.
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677888889999999998888875
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.06 E-value=0.053 Score=68.39 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 559 YKQTQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 559 eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
..+.++..+..++..++.++..+...
T Consensus 508 ~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 508 QAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444433
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.11 Score=63.77 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
..++.-|..+.+++.++...+..+..+-..+..+|-.+..++.+..
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777888888888887777777777766665554
No 46
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.93 E-value=0.088 Score=61.59 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (701)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~ 581 (701)
..|...+.+++..-|..++.|..+.+.|...+.+.
T Consensus 724 ~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 724 RNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665555443
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.92 E-value=0.047 Score=58.19 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 005339 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (701)
Q Consensus 496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~ql 535 (701)
...++...+.....+...+.++..++..|+.....|.+++
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 3455666777777777777777777777777766666554
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.043 Score=64.73 Aligned_cols=165 Identities=11% Similarity=0.162 Sum_probs=99.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael 437 (701)
++.-.+.|..++.+++.+=++.+-- .+..+..|..+|++|...+.+=.. |+-+..-.....-+.+..+
T Consensus 410 qlewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~-----------kl~Dvr~~~tt~kt~ie~~ 477 (1118)
T KOG1029|consen 410 QLEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSG-----------KLQDVRVDITTQKTEIEEV 477 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhheeccchHHHHHHHh
Confidence 3555667777777776665554443 333366667777776655432111 2222222222223445556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH---HHHH-HHHHHhHHHHHHh
Q 005339 438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW---QDEV-ERARQGQRDAENK 513 (701)
Q Consensus 438 QrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~l---keEL-~~lRq~qr~le~k 513 (701)
.+..+-.+.+..+|..++..+..-+-.|-.+-+.++.++.+.+....+...+.++|.+. ++.| ++++.+..+++..
T Consensus 478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE 557 (1118)
T KOG1029|consen 478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKE 557 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777788888877777777777777778877777765555554445555553 2222 4555666666666
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q 005339 514 LSSLEAEVQKMRVEMAAMKRD 534 (701)
Q Consensus 514 L~slE~elqkLr~e~~~Lk~q 534 (701)
..|.-.++.-+.+++++|+..
T Consensus 558 ~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 558 TESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 666677777777777777753
No 49
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.88 E-value=0.091 Score=61.93 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=37.0
Q ss_pred ChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER 303 (701)
Q Consensus 246 ~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ 303 (701)
+.+++..-|+....|+.++-.++.|-.+|......|++.-.....++..||..|..++
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666666666666555544
No 50
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.86 E-value=0.019 Score=66.06 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~---~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~ 417 (701)
...+...|..++..+.+++..++..+++++.+..++...... +..+...+|...|.-++.++..+...+..+...++
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl 186 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL 186 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 344555667777777778888888888886665555544443 23333588888899999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 418 ~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
.|..+++.....|.+... ....+.....+..++..++.++.......+++|.+|+....+..
T Consensus 187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL 248 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL 248 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 999999988899999998 44578888899999999999999999999999999996655543
No 51
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.85 E-value=0.12 Score=60.56 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~ 483 (701)
..+++.+..+++++.+.++++..+..++++++.+...++.++++.+.+.
T Consensus 714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999998888888888888888777776543
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.81 E-value=0.13 Score=59.63 Aligned_cols=141 Identities=18% Similarity=0.275 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhH
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQ 507 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~q 507 (701)
..+...+..+...|++.+..+......+..|......|+.+|...+..+.+++++...... .+..++.+|...+..+
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~---~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASS---EVSSLEAELNKTRSEL 353 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHhhHHHHHHHHHHHH
Confidence 3334455566666666666665555555556666666666666666666666543322222 2334555555555444
Q ss_pred HHHH-------HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 508 RDAE-------NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (701)
Q Consensus 508 r~le-------~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (701)
..+. ..+..+-..++.+..+.... +.-.....+++......++.......++..+|+.
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A---------------k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEA---------------KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 22233444444444444332 2333444555555555555555666666666655
Q ss_pred HHHHHH
Q 005339 581 EMNRLQ 586 (701)
Q Consensus 581 ~~~~~~ 586 (701)
+...+.
T Consensus 419 a~ke~e 424 (522)
T PF05701_consen 419 ALKEAE 424 (522)
T ss_pred HHHHHH
Confidence 554433
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.79 E-value=0.0061 Score=59.09 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER 419 (701)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~R 419 (701)
++..+..+...+...++.+++.+..+....+.++..|..++..++.+ +..++..|..++..++.-. .+...-..+..|
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~~-~~~~~~E~l~rr 81 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEESE-KRKSNAEQLNRR 81 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH-HHHHhHHHHHhh
Confidence 45566667778888888888888888888888888888888888888 8888888888888876542 222333466778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 420 e~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
..-||++.......|.....++.+.-.++..+++++..|+.....+-.+++.+..++...+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999988887654
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.1 Score=63.37 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=19.0
Q ss_pred HHHHHHhHHhhhhHhHhHhhhcchhHHHHHHH
Q 005339 630 QLQKAAKLLDSGAVRATRFLWRYPIARIILLF 661 (701)
Q Consensus 630 rvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~ 661 (701)
.++..+..||...-..-..=|+.---+++-||
T Consensus 1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IF 1043 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIF 1043 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56677777886665555555555555554444
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.72 E-value=0.22 Score=59.88 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
++|.++|+.++..++.|+++++.+++=|+.+...
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777777777777766666665
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.67 E-value=0.021 Score=65.30 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+.+++..+..+..++..++..+..++.++..+...+.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~ 252 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444444444444444444444444444444433333
No 57
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.65 E-value=0.3 Score=59.43 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQ 454 (701)
..+|..+...++.++.+.... ..+.....+.|..++..+.......++.+.....+...+.+-
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ 472 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQL 472 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 444555556666665554332 345555777777788778887777777777775444444443
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.60 E-value=0.18 Score=61.92 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
.|...++.+++.+...+.....+..++..+...++--...+
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666544333
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.29 Score=56.60 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=42.1
Q ss_pred CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
.+..++++++++...+. +.+.+..++.-|.+..++|+.....++.-+.+++.....+--+...|..++..-+.++...|
T Consensus 236 ~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665 55555555555666666665555555555555555333322233333334444444444444
Q ss_pred HHHHHHH
Q 005339 325 SEVTKVE 331 (701)
Q Consensus 325 ~~l~q~e 331 (701)
.....++
T Consensus 315 ~~~d~Lk 321 (581)
T KOG0995|consen 315 KENDELK 321 (581)
T ss_pred HHHHHHH
Confidence 3333333
No 60
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.12 Score=59.37 Aligned_cols=194 Identities=24% Similarity=0.253 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (701)
Q Consensus 372 E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eL 451 (701)
++..|+..+..++.+ ..+.+-+|..+++++++=...|+.+-..-..|+..|- ++--++-...
T Consensus 44 eK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLL-----------------qESaakE~~y 105 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESLL-----------------QESAAKEEYY 105 (772)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH-----------------HHHHHhHHHH
Confidence 344555555555555 6667777888888888777777777555555544442 2333344566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH--H-HH-HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--Q-AI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (701)
Q Consensus 452 eqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~--q-~~-qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e 527 (701)
-.++-.|+.++++++++|.....+.+++......... + ++ +-..++.||...+-.-.-+-+..+.+|++.=-|.+.
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 6778888889999999998888888887643332211 1 11 122245555533311111223446678888888888
Q ss_pred HHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 528 ~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
+..|+..- +.---++--|+.|.++..-...+++....=+.--..|||-++-.+..+
T Consensus 186 Vs~LR~sQ-----VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~E 241 (772)
T KOG0999|consen 186 VSNLRQSQ-----VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQE 241 (772)
T ss_pred HHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 87777421 111334556778888888888888887777777777777776555544
No 61
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.49 E-value=0.13 Score=52.31 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM 432 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLse 432 (701)
.+++.++..+|.-+..+++++.+|+...-.++++ .++|..++.+++..-..=...+.-++. +..+|-..+..|-.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~ 137 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQR 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHH
Confidence 4456677777777777888888888777777777 777887777777665543333333322 44444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339 433 ALARIQRIADERTAKAGELEQKVAMLE 459 (701)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE 459 (701)
-+..+..-+...-+.+.+-..++..+.
T Consensus 138 Ql~~~e~l~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 138 QLCEFESLICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444433433344444444444443
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.52 Score=57.57 Aligned_cols=111 Identities=18% Similarity=0.271 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339 290 SENAQLEELLVA---ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366 (701)
Q Consensus 290 sr~aqLEell~e---l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rl 366 (701)
+.++++|..|.. ++.+++.|.+.+.-...+|......+.+-+. . ..-+.+..+..++..++++++.....+
T Consensus 691 ~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~Ike~~~~~ 764 (1174)
T KOG0933|consen 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQIKEKERAL 764 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 3445666666666666665554443333222 1 112233344455555555555555555
Q ss_pred HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 367 ASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA 407 (701)
Q Consensus 367 eele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~ 407 (701)
-+.+.....+-....+ .+.+ +..++++|+.+.++++....
T Consensus 765 k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~ 808 (1174)
T KOG0933|consen 765 KKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSK 808 (1174)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 5555554444333333 2445 78888888888888876544
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.45 E-value=0.49 Score=58.29 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=24.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005339 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (701)
Q Consensus 334 ~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleel 369 (701)
+.+.+....+.|..+++.+..++.++++.+.++..+
T Consensus 219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~ 254 (1074)
T KOG0250|consen 219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL 254 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555566777777777777777777777666643
No 64
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.42 E-value=0.49 Score=55.97 Aligned_cols=135 Identities=23% Similarity=0.274 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 252 QLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
||-+....|..|-+. .+..|+..-.-|+-+++++-+.++.+.+.-.....++..|+..|...+..+....
T Consensus 1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 567778888888775 6777888877888888888888887777777777788888888877665444322
Q ss_pred HHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339 332 SNLAEALAAKNSEI-ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (701)
Q Consensus 332 s~~~eaLsak~~ei-e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (701)
. -.-.+.-++- ..|+.++..|..++..+..++.....++..+..-....+.+ +..++..|..++.
T Consensus 71 ~---~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEer-L~ELE~~le~~~e 136 (617)
T PF15070_consen 71 P---PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEER-LAELEEELERLQE 136 (617)
T ss_pred C---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 0000011111 24555555555555555555555444444442222222333 5555544444443
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.41 E-value=0.66 Score=57.32 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
.+|..|.-....++.+|+...++..-|..+++..+.-.
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 46777777788888888888888888888888766443
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.33 E-value=4.9e-05 Score=90.18 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 005339 417 MEREVELEHRAAEA 430 (701)
Q Consensus 417 ~~Re~eLEee~aeL 430 (701)
+.+..+||.++..+
T Consensus 256 l~~i~~LE~en~~l 269 (722)
T PF05557_consen 256 LAHIRELEKENRRL 269 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666665333
No 67
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.31 E-value=5.3e-05 Score=91.53 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChH-------HHHHH-
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-------EANQA- 490 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~-------ea~q~- 490 (701)
|...|++..-.+..-|.+++..+++....+..|++...-|..++..++.+|+.....+..+.++... ....+
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~ 394 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555555555554444433333222111 00000
Q ss_pred ----------HHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339 491 ----------IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (701)
Q Consensus 491 ----------~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK 560 (701)
...+.+..++-.++.....+...+..++.+...|..++..+..++.... ..-.+|++..+.|-.++.+-
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~-k~v~eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAG-KSVHELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc-cchHHHHHHHHHHHHHHHHH
Confidence 0122344445555555555555555566666666666655554441110 11245555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 005339 561 QTQLETMASEKAA 573 (701)
Q Consensus 561 Q~qlE~L~~Er~s 573 (701)
+.+++.+.+.+..
T Consensus 474 ~~~leE~E~~l~~ 486 (859)
T PF01576_consen 474 QEQLEEAEDALEA 486 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 68
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.59 Score=54.21 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=48.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005339 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (701)
Q Consensus 275 a~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~---rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~r 351 (701)
.+++.||++-.+.....++.|+..++++-++....+. ++..|...-++.|+.....+. +..+ +..-.+.+.+.
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-y~~~---~~~k~~~~~~~ 295 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-YVSQ---MKSKKQHMEKK 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-HHHH---HHhhhHHHHHH
Confidence 3456777777776666666666666666665543333 344444444444444443333 1111 22222234444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 352 IDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
+..+..++..-...++.++.+++.|+-.+.
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 69
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.28 E-value=0.68 Score=54.62 Aligned_cols=228 Identities=21% Similarity=0.227 Sum_probs=135.6
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSR----------LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (701)
Q Consensus 252 QLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~----------~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~ 321 (701)
+++.+...++.++. .|+.+.+.+-.++.+. +++++..+++|++.-..+.+..+........|.++|.
T Consensus 223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 34445555555543 4667777776666554 4566677888888777777776666665555666665
Q ss_pred HHHHHHHHHH----------------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 322 ~EQ~~l~q~e----------------------------s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
..+.++.... .++..+..+....+.+++..+..|+.-+.....|+.+.+.++
T Consensus 300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l 379 (786)
T PF05483_consen 300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL 379 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5444443322 123334444455556677778888888888888888888887
Q ss_pred HHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH--------------HHH--
Q 005339 374 ESIMRNRELTETR------MIQALREELASVERRAEEER------AAHNATKMAAMEREVE--------------LEH-- 425 (701)
Q Consensus 374 ~rl~e~l~~~eke------ilqSLE~eLkslq~~le~E~------~aH~aTr~ea~~Re~e--------------LEe-- 425 (701)
..+.-++..+..+ -.+..+.+|..++.-++.-. ........++..++.+ |+.
T Consensus 380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l 459 (786)
T PF05483_consen 380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL 459 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777766653111 12333344555554444311 1000111111111111 111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339 426 -----RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (701)
Q Consensus 426 -----e~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek 482 (701)
.+..|+..+..+-..+..+..+-.+|-..+..+..+-+++.|+..++-.++...+..
T Consensus 460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 135667777777778887777778888888888888888888888877777666543
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.23 E-value=0.72 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEEERAAHNA 411 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~a 411 (701)
+..+...|..+-..++.|..+++.
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~ 307 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKY 307 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554333
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.15 E-value=1 Score=54.14 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHH
Q 005339 305 LSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNL-------ASLQMNME 374 (701)
Q Consensus 305 k~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rl-------eele~E~~ 374 (701)
+-..|..+|..||.+|...+..+...+. .+.....-.....+.++..+..|..+++..|.|. +++++|+-
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344444555555555554444444442 1222222234445555566666666666666554 34444454
Q ss_pred HHHHHhhh
Q 005339 375 SIMRNREL 382 (701)
Q Consensus 375 rl~e~l~~ 382 (701)
.|+..++-
T Consensus 108 slQKqvs~ 115 (717)
T PF09730_consen 108 SLQKQVSV 115 (717)
T ss_pred HHHHHHHH
Confidence 44444444
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=97.12 E-value=1.2 Score=54.48 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=6.0
Q ss_pred hHhHhhhcchhH
Q 005339 644 RATRFLWRYPIA 655 (701)
Q Consensus 644 r~g~fLRRyP~a 655 (701)
..+.++.--|++
T Consensus 825 ~~~~lilDEpt~ 836 (895)
T PRK01156 825 DKSLLIMDEPTA 836 (895)
T ss_pred CCCeEEEeCCCC
Confidence 344455555553
No 73
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.04 E-value=0.00015 Score=87.84 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 439 rkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
..++.....+..|+++...++..+..++..+..+...+...+
T Consensus 363 ~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 363 SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555554444444444433
No 74
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=1.4 Score=53.88 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (701)
+.++..|++.+..+-++-......+.++++++..+..++..++.. +..|..+..+
T Consensus 236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~-l~~l~~ekeq 290 (1200)
T KOG0964|consen 236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENK-LTNLREEKEQ 290 (1200)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 334444444444444444444444445555555544444444444 4444433333
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.03 E-value=0.75 Score=51.91 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=28.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l 327 (701)
..+|++.++.++..+.+++..+.+-......+..+|..+...|..++...
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55666666666666666666555555555555555555555555544443
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.02 E-value=0.16 Score=49.36 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=88.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK 357 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~ 357 (701)
...++.....+.-++.++|.-+..++.+...|+..+..++..|...+..+...... ....+.|..++..|+.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~--------~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR--------KSNAEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHhHHHHHhhHHHHHH
Confidence 33455566666666777777666666667766666666666666665555444432 2233478888999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT 412 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aT 412 (701)
++.....++..+..-++.+--...+.+.. +..|+.+......+++.-...|..+
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 99999999998888888888888888877 8888887777777777655554443
No 77
>PRK09039 hypothetical protein; Validated
Probab=97.02 E-value=0.21 Score=54.94 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=96.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005339 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (701)
Q Consensus 275 a~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~ 354 (701)
...-.++++.+..+..+++.|=+++.-.+.+...|+.++..++.++...+..+..+++.+. .+......++.++..
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHH
Confidence 3456677777788888888888888888888888999999999998887777777776444 344445678888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (701)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (701)
+..++...+....+..-+...|...+..+..+ +.+++..|..++.+.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~ 167 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88999999999999999999888888888777 777777777666554
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.99 E-value=0.58 Score=55.13 Aligned_cols=84 Identities=14% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 005339 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE-------TMASE 570 (701)
Q Consensus 498 eEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE-------~L~~E 570 (701)
.+|..+|+..+.+...+...++...+|..+++.+.... .-.-|=.||.+.+-.+.-=+..|. .|..|
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~------~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQke 520 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV------NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKE 520 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677777778888888888887766543 134566788887766543334444 45556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 571 KAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 571 r~sL~~qLE~~~~~~~~ 587 (701)
.+++.-+|+|.=+-.|+
T Consensus 521 iN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 521 INSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 66666666665444443
No 79
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.99 E-value=0.47 Score=48.41 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512 (701)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~ 512 (701)
.+.++.-..++.-.+..+.-.++.+.+.+++..-.+.+. .++
T Consensus 68 qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~--------------------------------------~Es 109 (205)
T KOG1003|consen 68 QLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEA--------------------------------------AES 109 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------------------------------HHH
Confidence 344444445555566666677777777665544322221 123
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 513 kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (701)
++..++.++..+.+.++.+...-+.|+ +..-.|+..|+.|++.|-+-.+..+-+..-...|....+++.-++.
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~-q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLE-QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 333344444444444444333323333 5568899999999999998888777777666666666666554443
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.83 E-value=1.6 Score=51.16 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHhHHHH
Q 005339 388 IQALREELASVERRAEEERAAHNATKMA---AMEREVELEHRAAEASMALARIQRIA--D-ERTAKAGELEQKVAMLEVE 461 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTr~e---a~~Re~eLEee~aeLseALaelQrkL--e-Ee~aea~eLeqQls~LE~E 461 (701)
+..+..+|..+=..++.|..+++..... .......+...+..+..-+..+.... . .+...+..+.+++..++..
T Consensus 280 ~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 280 NEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666665554433221 11112222222222222222222211 1 2334445666666666666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005339 462 CATLQQELQDMEARLKR 478 (701)
Q Consensus 462 lkqLkQeLq~lE~e~~r 478 (701)
+..+.+.+..-..-+..
T Consensus 360 ~~~~~~~i~~~~~~yS~ 376 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSE 376 (560)
T ss_pred HHHHHHHHHcCCcCHHH
Confidence 55555555443333333
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.82 E-value=2 Score=52.15 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eL 423 (701)
.+++++......+.++..+|.++.++..+---+.++..+..++ +.+.+.... ++
T Consensus 411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~ 464 (980)
T KOG0980|consen 411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DV 464 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HH
Confidence 3567777778888888888888888888777666666665555 233222211 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (701)
Q Consensus 424 Eee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e 475 (701)
++++..|..-+.++++....--.+..+....++.|+.++..+..+++.++..
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555444433
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=2.3 Score=52.24 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhH
Q 005339 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNS 343 (701)
Q Consensus 271 e~qLa~~~~RLrk~~~elksr~aqLEell~el~ek----~~~Le~rl~~LQaeL~~EQ~~l~q~e---s~~~eaLsak~~ 343 (701)
.-++..+--.+.+++.+|.....-|+.-...-.++ ...+...+...-.+|.+.-..+...- ..+..++....+
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d 265 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 33444455555556666655555554421111111 22233333333333333322222211 234444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~ 407 (701)
++..+. .++..++..+.-+-.+++++..+-+..-+. +..|+-+++.++...+....
T Consensus 266 ~~~~~~-------~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 266 ESEDLK-------CEIKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred HHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhhhhh
Confidence 444444 455555566666666667766666665555 77788889999988766443
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.76 E-value=1.8 Score=50.76 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
++..+.......+..+..|..+-.....+|+.....+..
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 84
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.74 E-value=0.0019 Score=76.80 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (701)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (701)
.+..++..|..++..-+..+..|..++..|..+|+.
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777765
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.72 E-value=1.9 Score=50.53 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
+.+...+.++.+.|.+-......+.....+|...-..+.
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar 413 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAR 413 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555665555555555555555555544444333
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.54 Score=56.27 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=45.3
Q ss_pred CCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (701)
Q Consensus 244 ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~e 304 (701)
|+.-..+-.+-.+.+.|..+.+.++.+...|......|++..+...+..++|.+.+..++-
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456667777777788888888888888888888888888888888886665444
No 87
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.69 E-value=1.7 Score=55.94 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
.++..+|.++...|......+..+..+..++...+..+..+.
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666655555554444
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.62 E-value=1.8 Score=48.96 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 284 ~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
++....+.+++++..+...++....|+..|..++.++..
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~ 77 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.53 E-value=3.6 Score=51.34 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
..+-..|.-+-..|-..|..|+.+...-..+|+...+.+
T Consensus 1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 334444444445555555555555555555555443333
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.51 E-value=0.78 Score=48.36 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=52.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 276 RVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (701)
Q Consensus 276 ~~~~RLrk~~~elksr~aqLEell~el~ek---~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl 352 (701)
++..+.......+.+..+.+|.++..+..+ ...|++.+.+++.++...+.-....+..+... +.. .++
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v--~~~-------~e~ 91 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV--KDE-------REL 91 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccH-------HHH
Confidence 355555556666666666666655544333 33344456666666555554444444433111 122 344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
..|+.++...+.++..++.++..+++.+..+++.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555656666666555555555444
No 91
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.50 E-value=0.21 Score=52.54 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 005339 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKM 524 (701)
Q Consensus 445 ~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkL 524 (701)
..++.+++.+++.++.++..++.++...+..+... .. .-++.++..|+..+.+....|+..|..+..++.++
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-------~~-~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV-------KD-ERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444222 11 22566788888888888888888888888888888
Q ss_pred HHHHHHhhhhh
Q 005339 525 RVEMAAMKRDA 535 (701)
Q Consensus 525 r~e~~~Lk~ql 535 (701)
+.++..++..+
T Consensus 123 ~~~i~~l~~~~ 133 (239)
T COG1579 123 EKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
No 92
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.48 E-value=0.00069 Score=80.48 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 303 ~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.+.+..|..++..|+.+|.....-..++.. +...+...+..+.+...+...+..++..++.++..++.+.+++...+
T Consensus 338 ee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~ 414 (713)
T PF05622_consen 338 EEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER 414 (713)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666554433333322 22222222222223333333444444444444444444444444333
No 93
>PRK09039 hypothetical protein; Validated
Probab=96.48 E-value=1.9 Score=47.58 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005339 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513 (701)
Q Consensus 434 LaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~k 513 (701)
++.+-..+.-+..+...++..+..+...+..++.+-.+++..+............ ++..+..+|..++. .
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~---~~~~l~~~L~~~k~-------~ 131 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG---RAGELAQELDSEKQ-------V 131 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHH---HHHHHHHHHHHHHH-------H
Confidence 3334444445555555555555555555555555444444433321110000011 12223333333322 2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 514 L~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
....--++..|+.++..|+.|+ ..++..|..+.++..+.+.+++.|..+.+....+--.-+.+++++
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Ql--------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQL--------AALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334555666666666666554 445556666666666677777777666666654422223445443
No 94
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=3.1 Score=49.82 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 421 ~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
..+..+...+..++..+.++..+....+..|..++...+..+++++....+...++....
T Consensus 541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777777777777777777777777777777777777766666666554
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.39 E-value=2 Score=46.83 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (701)
Q Consensus 254 ee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~ 333 (701)
..-|+.||.+.++...+-..|+.....|+...-.+.....+=|+- .+..|-.+|..|..+-...--.|.+.+.-
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~------isN~LlKkl~~l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF------ISNTLLKKLQQLKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888888888888888888887777666666555553 45666677777777777766666666653
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhhHHHH
Q 005339 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN-MESIMRNRELTETR 386 (701)
Q Consensus 334 ~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E-~~rl~e~l~~~eke 386 (701)
+.. +|..++..+..+-..+...++.=++- ..+|+..+..++++
T Consensus 107 ltn----------~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 107 LTN----------DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 332 45555555544444444444432222 44555554444444
No 96
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.35 E-value=4.8 Score=50.88 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChH-HHHHHHHHHHHHHHHHHHHHh
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQG 506 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~-ea~q~~qLk~lkeEL~~lRq~ 506 (701)
..|..||..|.|.+++ ..+|+++.-.|-.-.+..+.=+++.+..+.+.= +++ +..+ +.+|..||..+|-.
T Consensus 1100 ~a~q~am~ghar~~e~----ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag--~kg~~~~f---~~alaae~s~l~~e 1170 (1320)
T PLN03188 1100 EAMQMAMEGHARMLEQ----YADLEEKHIQLLARHRRIQEGIDDVKKAAARAG--VRGAESKF---INALAAEISALKVE 1170 (1320)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHH---HHHHHHHHHHHHHH
Confidence 3344444445444432 355555555555444555555555444443331 111 1111 23455566555443
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEH--YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 507 qr~le~kL~slE~elqkLr~e~~~Lk~qle~--~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
.|.|-..|+.+-+.||-||-. --.+...+|=-||++--+-+.--|.+.-.++.|..-+-.|++++..+
T Consensus 1171 ----------reker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1171 ----------REKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred ----------HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766611 12234688889999999999999999999999999999999999988
Q ss_pred HHHH
Q 005339 585 LQEV 588 (701)
Q Consensus 585 ~~~~ 588 (701)
.+.+
T Consensus 1241 h~~e 1244 (1320)
T PLN03188 1241 HENE 1244 (1320)
T ss_pred HHHH
Confidence 8655
No 97
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.34 E-value=1.5 Score=44.84 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 005339 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM-------IQALREELASVERRAEE 404 (701)
Q Consensus 332 s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei-------lqSLE~eLkslq~~le~ 404 (701)
+++-.-+...++++..|..++...+......+.++-+...++.++.+.+.++.+=. -..|...|..++..++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~- 135 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ- 135 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-
Confidence 34444445555666666666666666666666666655555555555554421100 0111222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 405 E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
+...+...|+... .-+-....+.+..+..+..++...+..+..++..|++.|...+
T Consensus 136 ----------~~~~ki~~Lek~l---eL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 136 ----------EKEKKIQELEKQL---ELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred ----------HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222233333322 2222345555566666666666666666666666666665433
No 98
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.27 E-value=3.8 Score=48.83 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK 447 (701)
Q Consensus 408 aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~ae 447 (701)
.|+....++....++||++...-+.--+.++..|+...++
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AE 367 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAE 367 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444455556666665444444444455555444433
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.22 E-value=4 Score=48.55 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 291 r~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (701)
+...||..+..+......+..++..++.++...+..+...+..+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433444444444444455555555444444444444333
No 100
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.22 E-value=3.9 Score=49.26 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
........++.++..++.++++++.++...+.+...
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445567778888888888888888888887776655
No 101
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=5.3 Score=49.64 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 005339 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (701)
Q Consensus 496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk 532 (701)
++..+..+-.....|...|.+++..+.++..++..+-
T Consensus 861 ~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 861 VKKILRRLVKELTKLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 4444444444455566677778888888888865543
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.15 E-value=1.9 Score=44.13 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=35.3
Q ss_pred CChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
|++.|+.++.+++..|..=. -..-=|..+..|-.+++..+.-..+.|-.++ ......+..|...|...+
T Consensus 13 ki~~L~n~l~elq~~l~~l~----~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll-------~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELR----KENKTLKQLQKRQEKALQKYEDTEAELPQLL-------QRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45556666666555544321 1122344455555555554444444444433 333344444444444444
Q ss_pred HHHHHHHH
Q 005339 325 SEVTKVES 332 (701)
Q Consensus 325 ~~l~q~es 332 (701)
......+.
T Consensus 82 ~~~r~~~~ 89 (194)
T PF15619_consen 82 EQERELER 89 (194)
T ss_pred HHHHHHHH
Confidence 44443333
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.12 E-value=1.9 Score=44.00 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005339 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK---SEVTKVESNLAEALAAKNSEIETLVS 350 (701)
Q Consensus 274 La~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ---~~l~q~es~~~eaLsak~~eie~Le~ 350 (701)
|.....||......++-.+...|+.+..+.+.+..|...+..+|+.|...+ +++..++ .-....+++..-|..
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk----~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLK----TLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666666666555442 2222222 222233444445666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (701)
....++++...+-..+..+++++..+...+.-+.++ ...|-.+-.+|+..+
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-SKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-HHHHHHhhHHHHHHH
Confidence 777777777778888888888888877777776666 444443444444433
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.10 E-value=4.9 Score=48.50 Aligned_cols=326 Identities=18% Similarity=0.215 Sum_probs=168.7
Q ss_pred hhHHHHHHH---HHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339 251 DQLDEAQGL---LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (701)
Q Consensus 251 kQLee~n~~---LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l 327 (701)
.++.++... +|.+++...+...+|......|++....+.....+|=+-+++.+.+-..|-..+..|+.+-...|-.+
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444433 44456666666777777888888888777777777777777777776666667777777777777666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHhhhH--HHHHHHHHHHHHHHH---
Q 005339 328 TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM----RNRELT--ETRMIQALREELASV--- 398 (701)
Q Consensus 328 ~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~----e~l~~~--ekeilqSLE~eLksl--- 398 (701)
..+++... .-..++=+|.-|++++. -++..++++..=++=.. +-+..+ |.+.+.+|+++|...
T Consensus 114 s~Lk~sQv-efE~~Khei~rl~Ee~~-------~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 114 SVLKQSQV-EFEGLKHEIKRLEEEIE-------LLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 66665222 11223334444444444 44444443332222111 111111 344466666665541
Q ss_pred ---------HHHH-----------------H-HHHHHH----------------------------------------HH
Q 005339 399 ---------ERRA-----------------E-EERAAH----------------------------------------NA 411 (701)
Q Consensus 399 ---------q~~l-----------------e-~E~~aH----------------------------------------~a 411 (701)
.-.+ + .+...| -.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~ 265 (717)
T PF09730_consen 186 ESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLS 265 (717)
T ss_pred cccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchH
Confidence 1111 0 001111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHhcccCChH----
Q 005339 412 TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR--LKRGQKKSPE---- 485 (701)
Q Consensus 412 Tr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e--~~r~qek~~~---- 485 (701)
--..+...+..++.++..|...|.+.|+.|+.....+.+...++..|-..+..++.-....+.. ..........
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Confidence 0011112233446677888888888888888888777777777777666555555411100000 0111100000
Q ss_pred ---------H------HHHHHHHHHHHHHHHHHHHhHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHH
Q 005339 486 ---------E------ANQAIQMQAWQDEVERARQGQRDAENK----LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546 (701)
Q Consensus 486 ---------e------a~q~~qLk~lkeEL~~lRq~qr~le~k----L~slE~elqkLr~e~~~Lk~qle~~~~~~~~el 546 (701)
+ ...+.++..|+.||..++.....+..+ ....+.+++.|..++..+..... ........|
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r-e~qeri~~L 424 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR-EDQERISEL 424 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 0 001123444555555555443332221 12234444444444433222110 111245788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
+..|+.++...-+.+..+.....|..+.--.|-.+-...
T Consensus 425 E~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 425 EKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888887777776654443
No 105
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.06 E-value=3.7 Score=46.78 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 557 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
+-.++.++..|..+....+...+.+..++.+..
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567777777777777777777777766643
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.03 E-value=1.3 Score=43.14 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005339 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (701)
Q Consensus 292 ~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~ 371 (701)
.-..+..|.+-+.....|++++..|+++|...+..+..+.-. ......++..|+..+..+..++..+...+.-+-.
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788889999999999999998887776642 2335566666666666666666666666666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 005339 372 NMESIMRNRELTETRMIQALR 392 (701)
Q Consensus 372 E~~rl~e~l~~~ekeilqSLE 392 (701)
++..+...+.....+ +..|+
T Consensus 81 Ek~~L~k~lq~~q~k-v~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEK-VSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 666555555554444 33333
No 107
>PF13514 AAA_27: AAA domain
Probab=96.01 E-value=6.9 Score=49.44 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 005339 461 ECATLQQELQDMEARLKRG 479 (701)
Q Consensus 461 ElkqLkQeLq~lE~e~~r~ 479 (701)
.+..+..++..++..+...
T Consensus 855 ~~~~l~~~~~~~~~~l~~~ 873 (1111)
T PF13514_consen 855 ERRELREELEDLERQLERQ 873 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666443
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.01 E-value=7.9 Score=50.09 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.+..+-..+......+..+..+...+.+.+......
T Consensus 787 dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~ 822 (1353)
T TIGR02680 787 SLRAAHRRAAEAERQAESAERELARAARKAAAAAAA 822 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555544444443333
No 109
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.88 E-value=2.5 Score=43.33 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (701)
Q Consensus 492 qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er 571 (701)
++..++.+|..++.....++.++..++.+-..|.......=..+-+-+.-....|++++..|++.|..+..++.++..--
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556666666666666666666666666666543322222122234578999999999999999999999887744
Q ss_pred H
Q 005339 572 A 572 (701)
Q Consensus 572 ~ 572 (701)
+
T Consensus 174 n 174 (201)
T PF13851_consen 174 N 174 (201)
T ss_pred C
Confidence 3
No 110
>PRK11281 hypothetical protein; Provisional
Probab=95.85 E-value=8.1 Score=48.96 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 447 ea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
+...+.++....+..+++++|.+..++.+..-+
T Consensus 300 ~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 300 KLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444445555555555444444443
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=5.2 Score=46.58 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~ae 429 (701)
.++-.|+.+++.++.-+...+++++++...+++.-.- .+.++.+ +.++.-|+..++-........+.+||++|-.
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEENIs 181 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEENIS 181 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 5778888899999999999999999988888874111 2333322 3344445556666666677788999999865
Q ss_pred HHHHHHHH
Q 005339 430 ASMALARI 437 (701)
Q Consensus 430 LseALael 437 (701)
|.+.++.+
T Consensus 182 LQKqVs~L 189 (772)
T KOG0999|consen 182 LQKQVSNL 189 (772)
T ss_pred HHHHHHHH
Confidence 55544443
No 112
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.81 E-value=1.1 Score=42.81 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLs 431 (701)
+..++.++..++..++.+......++.++....+. .+.++..|+.|...|..+-. .+..+..+...+-
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~--------a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKI--------AQEAQQKYERELVKHAEDIK----ELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHH
Confidence 34444455555555555555555555444443333 77888888888888866632 3333433433333
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 432 MALARIQRIADERTAKA----GELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 432 eALaelQrkLeEe~aea----~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
..+..+....+.....+ ..|..+=.+|+.++..++.++.++.
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333 2333333444444444444444444
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.80 E-value=1.2 Score=42.40 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q 005339 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA 519 (701)
Q Consensus 440 kLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~ 519 (701)
.+..-.........++..+..|++.........+..|.+.-..-.. .+..|..++.+++.++.....++..+.+...
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~---~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAE---DIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555556666666666666665554322211 1224555666666666555555555555555
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (701)
Q Consensus 520 elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~ 581 (701)
.+...+..|. .+=..|..++.+.+.+++.|...+.-|--|||.+
T Consensus 88 ~l~~~e~sw~------------------~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 88 ELEESEASWE------------------EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555553 3445566677777777778888888887777753
No 114
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.66 E-value=5.3 Score=45.50 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQ 467 (701)
+.++..+|+-+.+.+..+...+..+-..+..|...+|.+...+.+++.-+.+++.+.+.+++++..++.... +...++
T Consensus 208 l~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~ke 285 (554)
T KOG4677|consen 208 LRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKE 285 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHH
Confidence 566667788888888888777778888899999999999988999999999999999999999998887755 456677
Q ss_pred HHHHHHHHHH
Q 005339 468 ELQDMEARLK 477 (701)
Q Consensus 468 eLq~lE~e~~ 477 (701)
+|-+....-.
T Consensus 286 eL~~s~~~e~ 295 (554)
T KOG4677|consen 286 ELALSHYREH 295 (554)
T ss_pred HHHHHHHHHh
Confidence 7755443333
No 115
>PF14992 TMCO5: TMCO5 family
Probab=95.53 E-value=4.3 Score=43.81 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 369 LQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 369 le~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
+-+.+..+..++...|.. +++|+.++.-.-..++
T Consensus 16 ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~ 49 (280)
T PF14992_consen 16 LDEANQSLLQKIQEKEGA-IQSLEREITKMDHIAD 49 (280)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccC
Confidence 334455555555555555 6666666555444433
No 116
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.50 E-value=3.9 Score=42.83 Aligned_cols=127 Identities=20% Similarity=0.302 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005339 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (701)
Q Consensus 272 ~qLa~~~~RLrk~~~elksr~aqLEell~el~ek--------~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~ 343 (701)
.++..-...+...+..+..++..|+..+...... ...|...+..|...+..++..+...+..+..+
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr------ 154 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR------ 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3444455566666666666777776666654443 34555566666777666666666666544433
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQA----ALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (701)
Q Consensus 344 eie~Le~rl~~Le~el----~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a 408 (701)
|......+...+ ..-...+..+..+.+.+...............-.+|++++.++..|..+
T Consensus 155 ----l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~ 219 (247)
T PF06705_consen 155 ----LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQE 219 (247)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333333 3333444455555555554444445553444667888888888887665
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.31 E-value=1.8 Score=47.27 Aligned_cols=123 Identities=28% Similarity=0.343 Sum_probs=80.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (701)
Q Consensus 273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl 352 (701)
-+.-++..|.+....++.-.+.|...+..+.+..-.+..+...|..++..++........ --..++..+..++
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr~eL 218 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHHHHH
Confidence 344466677777777777777777766666666666777777777777666654443332 1334555666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
..+..++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777776666 6666666666665554
No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.28 E-value=5.8 Score=43.50 Aligned_cols=7 Identities=0% Similarity=-0.220 Sum_probs=2.7
Q ss_pred CCCChhh
Q 005339 243 DDPPTKE 249 (701)
Q Consensus 243 ~ek~~~l 249 (701)
.+.+..+
T Consensus 68 G~~L~~l 74 (423)
T TIGR01843 68 GQVLVEL 74 (423)
T ss_pred CCeEEEE
Confidence 3333333
No 119
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.23 E-value=6 Score=44.71 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 292 NAQLEELLVAERE-LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (701)
Q Consensus 292 ~aqLEell~el~e-k~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele 370 (701)
.-.||.++-..++ -..-|-+++..||.+-...|..+.|+..+...-..+.+.+.+. -+..+=.|+++++
T Consensus 145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa----------lvN~LwKrmdkLe 214 (552)
T KOG2129|consen 145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA----------LVNSLWKRMDKLE 214 (552)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHHH
Confidence 3345554333332 2344555677777776666777777766555222222222222 2445566778888
Q ss_pred HHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 371 MNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA 427 (701)
Q Consensus 371 ~E~~rl~e~l~~-----------------------~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~ 427 (701)
.+++.|+.+++. .++.+++-|+.++.-++..+..=...|..--++....+..+.+++
T Consensus 215 ~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen 294 (552)
T KOG2129|consen 215 QEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREEN 294 (552)
T ss_pred HHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888777754 134444444444444444433333333333343333444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 428 AEASMALARIQRIADERTAKAGELEQK 454 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQ 454 (701)
..+|++|..+.-+-.-|.++
T Consensus 295 -------~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 295 -------ERLQRKLINELERREALCRM 314 (552)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 45556665555444444443
No 120
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.23 E-value=5.9 Score=43.26 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q 005339 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (701)
Q Consensus 454 Qls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~ 528 (701)
++..+-.....|+..|..|-......+..+.-... -...++.|+...-. ++..+|.+...++..+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe---~F~tfk~Emekm~K-------k~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNE---VFETFKKEMEKMSK-------KIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 66666666667777777777666665533311111 12234444443332 3333566666666555
No 121
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.14 E-value=11 Score=46.05 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHR---AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (701)
Q Consensus 389 qSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee---~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqL 465 (701)
...+.....++..+..-...|.......-+..+.++.+ ..++.+-..++.+.+.+-......++.+.....--++++
T Consensus 420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444456666666666677777766666665555443 356666777777777777777777777777777778888
Q ss_pred HHHHHHHHHHHHhcccCChH
Q 005339 466 QQELQDMEARLKRGQKKSPE 485 (701)
Q Consensus 466 kQeLq~lE~e~~r~qek~~~ 485 (701)
++++..+..++.+++..+..
T Consensus 500 ~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 500 RQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88887777777777655433
No 122
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.08 E-value=5.1 Score=45.37 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=101.1
Q ss_pred hhhHHhhhhcCCCChhhhhhHHHHHHHHHhh----hhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS 308 (701)
Q Consensus 233 ~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE----~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~ 308 (701)
-+.+.|+..|.+.+.-.++.-.|+-.++--+ ++.+++++.||.....+|+.-..-+++....|+.-.++..+..-.
T Consensus 264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 5678888889998888888888888777665 588999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE--------GNLASLQMNMESIMRN 379 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K--------~rleele~E~~rl~e~ 379 (701)
+..++...|....+.=..+.+-+. .-.+-...|++|-..+..++....... .|+.+++.+.+++.+.
T Consensus 344 lrlql~~eq~l~~rm~d~Lrrfq~----ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 344 LRLQLICEQKLRVRMNDILRRFQE----EKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccc
Confidence 777777766665555544444333 222334455555544444443322222 5666777776666544
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.07 E-value=10 Score=45.09 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (701)
Q Consensus 440 kLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek 482 (701)
.......++..++.++..+..+++.--+.+..+..++.+.-+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334446667777777777777777666677777777776654
No 124
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.03 E-value=15 Score=46.74 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 447 ea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
+...+.++....+..+.+++|.+..++++..-++
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445555555665555555555444
No 125
>PRK01156 chromosome segregation protein; Provisional
Probab=95.01 E-value=12 Score=45.85 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=2.4
Q ss_pred CCCCCC
Q 005339 37 ASNGQG 42 (701)
Q Consensus 37 ~~~~~~ 42 (701)
|.||.|
T Consensus 30 G~NGsG 35 (895)
T PRK01156 30 GKNGAG 35 (895)
T ss_pred CCCCCC
Confidence 334443
No 126
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.83 E-value=5.7 Score=41.04 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005339 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAE---RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (701)
Q Consensus 270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el---~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie 346 (701)
|.+.++-++..|++...++..+...+=.+=+.+ +......+..+..|+..+..-.-++..-+ ..+..+.++++
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce----~ELqr~~~Ea~ 83 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE----NELQRKKNEAE 83 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH----HHHHHHhCHHH
Confidence 556677778888888777766544333222211 11222222233333333322222222111 22223444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQ---MNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME 418 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele---~E~~rl~e~l~~~-----ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~ 418 (701)
-|...+..++.++..++..+..+- .+...+...-... ....+.+|..++..++..+..|...+......|..
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555555555541 1111100000000 01125566667777777777766665555554444
Q ss_pred HHHHHHHHH
Q 005339 419 REVELEHRA 427 (701)
Q Consensus 419 Re~eLEee~ 427 (701)
-=..+.++.
T Consensus 164 ER~~W~eEK 172 (202)
T PF06818_consen 164 ERRTWQEEK 172 (202)
T ss_pred HHHHHHHHH
Confidence 444555554
No 127
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.77 E-value=0.26 Score=49.79 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005339 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI 345 (701)
Q Consensus 273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~-------rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~ei 345 (701)
.+.....+|++.++++.+....+...|..+......++. +|..|+.++...+..+.... ..+..++..+
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~----~~l~ek~k~~ 146 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLE----EELKEKNKAN 146 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344445556666666666655555555544444333333 44444444444444444433 3444567777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+.|.+++.+|+-++..+..++.+++.|++.|-++.-.
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888887777666554
No 128
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.75 E-value=7.9 Score=42.29 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 258 ~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
+.+..+...+.-+-.+|......++..+.-.......||.++|+++-..+.+......+..+-.. .+..+.+.|...
T Consensus 39 k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~---kR~el~~kFq~~ 115 (309)
T PF09728_consen 39 KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE---KRKELSEKFQAT 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444444444555667777777777777778888899999999888888888876666555433 334455566666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005339 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (701)
Q Consensus 338 Lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~ 374 (701)
+......|+.-......+..+-..+..++..+.++-+
T Consensus 116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555566666666666666655543
No 129
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.59 E-value=0.0096 Score=70.97 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMA 568 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~ 568 (701)
..|+..++...+.+..-+.+++.+.
T Consensus 498 ~~Le~~~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 498 EKLEEENREANEKILELQSQLEELQ 522 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444
No 130
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=15 Score=44.69 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 502 RARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS------REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 502 ~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~------~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
+..+...++..++..+...+.++.+.++++..|.+..+ .+....++-.+-.++++-.+++--+.....-..+|.
T Consensus 852 ~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk 931 (970)
T KOG0946|consen 852 LIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALK 931 (970)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHH
Confidence 33333344444555566666666666555554442110 011122333444555555555444444444444555
Q ss_pred HHHHHHHH
Q 005339 576 FQLEKEMN 583 (701)
Q Consensus 576 ~qLE~~~~ 583 (701)
--|+.+..
T Consensus 932 ~~l~dL~q 939 (970)
T KOG0946|consen 932 EALEDLNQ 939 (970)
T ss_pred HHHHHhCC
Confidence 55555443
No 131
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.53 E-value=6.5 Score=40.34 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el 359 (701)
-+++......+.+..+...+..+.+-...++..+..|+..|.. -+. ....|...+..+..++..+..+.-+.
T Consensus 38 emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-------y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 38 EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-------YEK-DKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555555555555544 222 22234445556667777888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 005339 360 ALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~ 382 (701)
..+..+..+++.+.+.|....+.
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877776
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.52 E-value=11 Score=42.97 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 005339 656 RIILLFYLVFV 666 (701)
Q Consensus 656 Rl~~l~Y~vlL 666 (701)
++|+|+|++++
T Consensus 476 ~~~~~~~~~~~ 486 (498)
T TIGR03007 476 LAAFLASAGLL 486 (498)
T ss_pred HHHHHHHHHHH
Confidence 34444554443
No 133
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.47 E-value=8.9 Score=41.71 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
...+..+-.|.+|.--|+-||+.+..+++.
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456667778888888888888877764
No 134
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.35 E-value=12 Score=43.51 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 497 keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
..|-+.+......++....++..++..+...+..|++.++ +...-||.||..|+|+|+..+.++..-..|+++|.
T Consensus 440 ~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~----TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 440 YAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE----TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555666666666666777776662 34689999999999999999999999999999886
No 135
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.33 E-value=18 Score=44.74 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=5.6
Q ss_pred CChhhhhhHHHHH
Q 005339 245 PPTKEQDQLDEAQ 257 (701)
Q Consensus 245 k~~~lqkQLee~n 257 (701)
.|..+..++.++.
T Consensus 233 e~e~l~~~~~el~ 245 (908)
T COG0419 233 EIEALEERLAELE 245 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 136
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.27 E-value=18 Score=44.31 Aligned_cols=120 Identities=25% Similarity=0.282 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE---RRAEEERAAHNATKMAAMEREVE 422 (701)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq---~~le~E~~aH~aTr~ea~~Re~e 422 (701)
..|..++..++.+-..+...+.+++.+++.++-.+...+.. +.+|+.+|.+++ ..++.++..+.........|...
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 33444444444444444444444444444444444444444 444444433332 23333344444444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (701)
Q Consensus 423 LEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk 466 (701)
++.+...+..-+..++..++.++.-..++..+|..|+.++....
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 66666666666777777777777766666666666665555443
No 137
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.26 E-value=16 Score=43.64 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
++.++..++..+.+++..++..++.++...+.+.+
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333
No 138
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.99 E-value=11 Score=41.14 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
+|+.+...+...+..|...+-..+-+++.|+..+..|-..--..+....+.+.
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE 76 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE 76 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555556666666666666666666665555555554
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.93 E-value=17 Score=44.10 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (701)
Q Consensus 495 ~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL 574 (701)
.+.+||+..+.+.+.+...|......+.+.+..+. .+... . . .....-+.|.+.+++-|.+--..|..+-.+...+
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~-~-~-~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSP-K-K-KSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc-c-C-CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555555555555555443 11110 0 0 1124556788888888888878887777776665
Q ss_pred HHH
Q 005339 575 EFQ 577 (701)
Q Consensus 575 ~~q 577 (701)
...
T Consensus 712 ~~~ 714 (717)
T PF10168_consen 712 KKI 714 (717)
T ss_pred HHh
Confidence 543
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.68 E-value=1 Score=46.46 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 331 es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
..++.+.+...+..+.+|..+...|.+++..++.+++.++.+++.+++..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555666777777777777777777777777766666544
No 141
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.67 E-value=13 Score=40.57 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-- 383 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~-- 383 (701)
..++..+...|+..|.---+.+++.-..|. .++..|..+.+.|..++...|..-+.++.++.+..-++..-
T Consensus 33 iei~Kekn~~Lqk~lKLneE~ltkTi~qy~-------~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~ 105 (305)
T PF14915_consen 33 IEILKEKNDDLQKSLKLNEETLTKTIFQYN-------GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ 105 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666665544444444433333 33445555555566666666666666666665555554441
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhH
Q 005339 384 -ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAML 458 (701)
Q Consensus 384 -ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea----~eLeqQls~L 458 (701)
..+...+.+ .++-++..+...|-..+....-....|...|..|++-|...+.++.-=..+. +.|+++--.+
T Consensus 106 d~dqsq~skr----dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l 181 (305)
T PF14915_consen 106 DHDQSQTSKR----DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL 181 (305)
T ss_pred hHHHHHhhHH----HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111122222222223332233345556666677777776666554433332 4555554444
Q ss_pred HH---HHHHHHHHHHHHHHHHHhcccCChHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhhhhHH
Q 005339 459 EV---ECATLQQELQDMEARLKRGQKKSPEEANQAI----QMQAWQDEVERARQGQRDAENKLSSLE 518 (701)
Q Consensus 459 E~---ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~----qLk~lkeEL~~lRq~qr~le~kL~slE 518 (701)
|. |+.+.+..+..++..+...+.++..-....+ +|--++.|---+|+++.++..+-...+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4555555555555555444433332221111 122234444445555555444443333
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.65 E-value=13 Score=40.67 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhH
Q 005339 360 ALSEGNLASLQMNMESIMRNRELT 383 (701)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~~ 383 (701)
..+..++-.+++||..|..+.+++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555544
No 143
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.58 E-value=5.4 Score=43.68 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=66.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005339 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (701)
Q Consensus 274 La~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~ 353 (701)
|.-++..|.+....++.-...|...+..+.+..-.|..+...|..++..++.....+++ -..++...+..++.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-------~d~~eL~~lk~~l~ 214 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-------CDPTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------CCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555554433333222 12334445555666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (701)
Q Consensus 354 ~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (701)
....++...+..+++++.++..+...+.....+ ++.++.+|+.++.-.
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~ 262 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555 555555555555543
No 144
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.41 E-value=28 Score=43.68 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 333 ~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
.+...+++.++++..+..++..-+.++...+....+.-.+.
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~ 271 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRREL 271 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444444443333
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.40 E-value=23 Score=42.74 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=17.3
Q ss_pred Ccchhhhhhhhccccccccc-ccccc
Q 005339 88 DTATLAVEKETITTGKTQKN-GEQQQ 112 (701)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 112 (701)
+...+.+|.+.|.|..++.- .+++.
T Consensus 70 ~~~~v~tqieiL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 70 DETGVATQVEILSSNEILKQVVDKLG 95 (754)
T ss_pred cHHHHHHHHHHHccHHHHHHHHHHcC
Confidence 44567888899999988854 44443
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=19 Score=41.26 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 509 ~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
.+..++.+.+....+|++++..+=+ .+.-..|..||++++-.+---.+.|-.+..|...|+.|+.....++
T Consensus 356 a~~eei~~~eel~~~Lrsele~lp~------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKLRSELEKLPD------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777654333 2346889999999998766555889999999999999888866554
No 147
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.15 E-value=23 Score=42.00 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=41.3
Q ss_pred HhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 005339 635 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA 681 (701)
Q Consensus 635 a~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~~~~~ 681 (701)
...+|++.+-+|+|+..+-++|.+||||+|+||+.||+||+ +-+.+
T Consensus 575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~s 620 (629)
T KOG0963|consen 575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAAS 620 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 45679999999999999999999999999999999999999 55543
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=93.13 E-value=30 Score=43.33 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD 498 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lke 498 (701)
+...|+.+..-|..++.+++.++-....-+. +++.|..++ +-.+.+.++.-+.+..++....+.-+.+-..++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQEDVS----KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRD 331 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7788888888888888888888755543332 223333333 4444444444444443333222221112223333
Q ss_pred HHHHHHHhHHHH-HHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 499 EVERARQGQRDA-ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (701)
Q Consensus 499 EL~~lRq~qr~l-e~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~E 570 (701)
.+..+.....++ -.++++. .+..|+.+++.++..+ .....+...++.--.+.+.+-|..+..|..|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 332 KVDKLEASLKEANVSKFSSY--KVELLQQKLKLLEERL----QASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHhhHhhhhHH--HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333332222 1222221 2344445555555443 1224566666666777777777777766654
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.93 E-value=19 Score=40.53 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 005339 513 KLSSLEAEVQKMRVEMAAMK 532 (701)
Q Consensus 513 kL~slE~elqkLr~e~~~Lk 532 (701)
++..+|.+...|..++..|.
T Consensus 260 ~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 260 QLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666654443
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.87 E-value=13 Score=38.50 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 517 lE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
...++..|+..++. .+-++.+|.+.|.+|....+.|..=..-|.
T Consensus 159 ~~~e~~aLqa~lkk---------------~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 159 HQAELLALQASLKK---------------EEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666532 234778888888888888777766544443
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.86 E-value=0.5 Score=47.77 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
++.||..+...+..+..+|..+..+++.++..+......+..+ ......|+.++..|.+.|.+|+..++.|.+|..+|.
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp -----------------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444455445555555555443322222111 122477888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005339 576 FQLEKEMNRLQEVQ 589 (701)
Q Consensus 576 ~qLE~~~~~~~~~~ 589 (701)
+++-.++.+++..+
T Consensus 158 l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 158 LQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877654
No 152
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=92.74 E-value=18 Score=39.70 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA 592 (701)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~ 592 (701)
-.+..+++.|..|....+..++.+..++++...++
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777776655433
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.70 E-value=18 Score=39.63 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
+.++..+..++..++.++...+..+..++.+.
T Consensus 150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 150 LAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 154
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.69 E-value=7.7 Score=38.63 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
++...+.+++.+..+++..+..++.....+...+..++..+...+
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555544444444444444444444443333
No 155
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.65 E-value=14 Score=38.13 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
+.-|...+-.|+..-.++.--+.+|..|+.++..+.+.+..+.
T Consensus 87 arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~ 129 (205)
T KOG1003|consen 87 ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS 129 (205)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4445555555555555555555566667777666666665444
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.47 E-value=22 Score=40.08 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.+....++++...+..+.+++.++.++...-.++..+
T Consensus 116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666655544444444
No 157
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.25 E-value=44 Score=42.98 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 005339 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (701)
Q Consensus 492 qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ 561 (701)
+++.+..|+..++.++- ...+++..++..+|..+...+.....- ---...+|+.++..++.+|.+++
T Consensus 1016 q~~e~~re~~~ld~Qi~--~~~~~~~~ee~~~L~~~~~~l~se~~~-~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1016 KLKELERELSELDKQIL--EADIKSVKEERVKLEEEREKLSSEKNL-LLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred HHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhhHhhH-HHHHHHHHHHHHHHHHHHhhhhh
Confidence 44455566666665543 344666777777777775333221100 00235889999999999999776
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.23 E-value=12 Score=41.04 Aligned_cols=135 Identities=20% Similarity=0.200 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 251 kQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
..|++-...|+..-..|..+...+..+.-.|++....++.+..+|...-.+...-+ +.+|...+..+...
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d----------~~eL~~lk~~l~~~ 216 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD----------PTELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC----------HHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555555444444222211111 11222222222222
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 005339 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVER 400 (701)
Q Consensus 331 es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~ 400 (701)
.. .+..+...+.+++.++..+...+...+.+..++..+...+...+.. ..++ +..|...+..++.
T Consensus 217 ~~----ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le~ 285 (312)
T smart00787 217 LQ----EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQS 285 (312)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 21 2223344444555555555555555555555555554444443333 2444 4444444444443
No 159
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.16 E-value=19 Score=38.54 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE 422 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~----ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~e 422 (701)
+|+..+.-++.....+..+-..+..|..+++++..+. .+. ...|+.+|..+. +-+.+...+..+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q-~s~Leddlsqt~-----------aikeql~kyiRe 116 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ-ESQLEDDLSQTH-----------AIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4444444444455555555555555555556555552 333 444444444333 234444556677
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 005339 423 LEHRAAEASMA-------LARIQRIADERTAKAGELEQ 453 (701)
Q Consensus 423 LEee~aeLseA-------LaelQrkLeEe~aea~eLeq 453 (701)
||.+|..|..+ +...+.+|++++-+...|+.
T Consensus 117 LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLES 154 (333)
T KOG1853|consen 117 LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLES 154 (333)
T ss_pred HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777666554 34445555555544444443
No 160
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.06 E-value=34 Score=41.26 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 324 Q~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+..+..+...+.+.+++..+-+..|+.++..++.........+..++.+.+-|.+.++.....
T Consensus 150 qeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~ 212 (739)
T PF07111_consen 150 QEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE 212 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455555677788888888888888888888877777777777777777777776664333
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.99 E-value=40 Score=41.90 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhh
Q 005339 255 EAQGLLKTTISTGQSKEARLARVCAGLS 282 (701)
Q Consensus 255 e~n~~LrsE~e~l~~ke~qLa~~~~RLr 282 (701)
.....++.....|......+.+...++.
T Consensus 281 ~~~~~~~~~~~~L~~~~~e~~~~~~~~~ 308 (908)
T COG0419 281 RLLEELEEKIERLEELEREIEELEEELE 308 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333433333333333333333
No 162
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.92 E-value=21 Score=38.48 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (701)
+|-.|+.++..=+.--+.-++....+...|...-..+
T Consensus 131 D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 131 DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666555555555555555555554444443
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.75 E-value=8 Score=41.63 Aligned_cols=57 Identities=30% Similarity=0.344 Sum_probs=45.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005339 540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596 (701)
Q Consensus 540 ~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr 596 (701)
...+..|++.-.-|+-.|.-|..++.-|+.-.++-..++++++..+.....+++++.
T Consensus 73 ~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 73 MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888889999999999888888888888877766666676654
No 164
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.60 E-value=38 Score=40.83 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 005339 360 ALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~ 382 (701)
...+.+...++.++.+.......
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~ 137 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQA 137 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555554444433333
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.58 E-value=16 Score=36.42 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e 475 (701)
+...+......+.+-+..+++.+.+...++..++..+..+..++..+.+.+++.+.-
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555666666666666655555555555444433
No 166
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.49 E-value=31 Score=37.90 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 307 RSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 307 ~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
..|+.++..|+.+....+.+..++..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55666777777777777776666664
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.37 E-value=50 Score=40.07 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
..++.|+ +...|.+++...|.+++++.-+.+++....+.+-.+
T Consensus 210 ermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 210 ERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444 566777778888888888888877777766665444
No 168
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.11 E-value=11 Score=35.87 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 303 ~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+...+.++.++..++.++.+....+..+..++. ++...+++. .....++..++..+.+++..-+.+.+-+..
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv-~l~~~~e~~-------~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIV-KLMEENEEL-------RALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444555555555554444444444443 122222222 222233333344444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005339 383 TETRMIQALREELASVERRAEE 404 (701)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~ 404 (701)
+..+ ...|+.++..++.-+..
T Consensus 94 K~E~-veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 94 KSEE-VEELRADVQDLKEMYRE 114 (120)
T ss_pred hHHH-HHHHHHHHHHHHHHHHH
Confidence 5555 67777777777766544
No 169
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.02 E-value=56 Score=40.17 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 547 EKRYRELTDLLYYKQTQLETMAS 569 (701)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~ 569 (701)
+--.+.|++-|..|...|+....
T Consensus 271 eeEnk~Lke~l~~k~~ELq~sr~ 293 (769)
T PF05911_consen 271 EEENKMLKEALAKKNSELQFSRN 293 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666555444
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.99 E-value=52 Score=39.71 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
...++..+-.|+.-|..+|..+...+
T Consensus 351 v~e~qtti~~L~~lL~~Eqqr~~~~e 376 (786)
T PF05483_consen 351 VTELQTTICNLKELLTTEQQRLKKNE 376 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455566666665555544444
No 171
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.98 E-value=31 Score=37.16 Aligned_cols=42 Identities=21% Similarity=0.061 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
..|+++..++..-+..-......+..|+.+|..|.....+.+
T Consensus 186 ~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a 227 (265)
T COG3883 186 NSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAA 227 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555667777788888886666655443
No 172
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.87 E-value=14 Score=42.87 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=91.1
Q ss_pred HhhhhcCCCChhhhh---hHHHHHHHHHhhhhhcchHHHHHH-HHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 005339 237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLA-RVCAGLSSRLQEYKSEN---AQLEELLVAERELSRSY 309 (701)
Q Consensus 237 ~~~~~~~ek~~~lqk---QLee~n~~LrsE~e~l~~ke~qLa-~~~~RLrk~~~elksr~---aqLEell~el~ek~~~L 309 (701)
.++.-.-+|...+.+ ||+---+.||+|.=+-..|+.++- ...-+|+.......+-. +++=..+..+++-...|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554444 555666778888766778888888 55556777666655543 33333445677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 310 e~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
.+.|+.++...... ....+++.+.|-...+-...|..++..++.+..+....+.++++++..+
T Consensus 239 lsql~d~qkk~k~~----~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYL----RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888877653 3334456666667777777788888888888888888888888886654
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.77 E-value=19 Score=34.35 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 005339 390 ALREELASVERRA 402 (701)
Q Consensus 390 SLE~eLkslq~~l 402 (701)
.|+.+++.++.++
T Consensus 72 ~L~~el~~l~~ry 84 (120)
T PF12325_consen 72 ELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 174
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.54 E-value=29 Score=36.10 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (701)
Q Consensus 393 ~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALael 437 (701)
.-+.....++..+...|.+.+..+. ..|+.+|.++......+
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~ 159 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKH 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 3344445555555555666666544 23445554444444433
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.50 E-value=6.3 Score=46.46 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 288 lksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rle 367 (701)
+.+++..++..+..+.+-.+.|+..+.+++.++....+.+.++..++. .-..++-++..+..++..|+.++.+.+.+++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443222 1223666777888888888888888888888
Q ss_pred HHHHHHHHHH
Q 005339 368 SLQMNMESIM 377 (701)
Q Consensus 368 ele~E~~rl~ 377 (701)
.|+..+.++.
T Consensus 499 ~L~~~l~~l~ 508 (652)
T COG2433 499 ELERKLAELR 508 (652)
T ss_pred HHHHHHHHHH
Confidence 8887776655
No 176
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.43 E-value=49 Score=38.65 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE---EERAAHNATKMAAM 417 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le---~E~~aH~aTr~ea~ 417 (701)
.+....++..+++-++-.+......|+..-.++-+.+++.+.+..+ +..+.++++-+.-.-+ .-+.+++....+..
T Consensus 196 eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq-l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~ 274 (596)
T KOG4360|consen 196 EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ-LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444456777777777788888777888888888888888887777 5555555544433221 12333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 418 EREVELEHRAAEASMALARIQRIA 441 (701)
Q Consensus 418 ~Re~eLEee~aeLseALaelQrkL 441 (701)
+.+.++|...++...-+.+.+-.|
T Consensus 275 aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 275 AELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555533333333333333
No 177
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.39 E-value=32 Score=41.58 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-HHhhchhhhhhhhH
Q 005339 651 RYPIARIILLFYLVFVHLFLMYL-LHRLQEQADNFAAR 687 (701)
Q Consensus 651 RyP~aRl~~l~Y~vlLHLWV~~V-L~~~~~~~~~~~~~ 687 (701)
+-|++|+-.-+-+.-|-+||-+. ++.-.+.+++.+++
T Consensus 582 ~~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~ 619 (916)
T KOG0249|consen 582 GLPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGA 619 (916)
T ss_pred cCchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhH
Confidence 45777776666677788888655 55555555554443
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.29 E-value=76 Score=40.64 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (701)
++..+..-++-|.+--..+..+-.+...|..--+.+....+
T Consensus 381 l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~ 421 (1109)
T PRK10929 381 LDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALK 421 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444443333333333
No 179
>PRK11281 hypothetical protein; Provisional
Probab=89.28 E-value=76 Score=40.65 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (701)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E 372 (701)
..++++..++.+...++..+.....++.++...
T Consensus 146 ~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 146 EYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555543
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.25 E-value=11 Score=41.10 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (701)
Q Consensus 497 keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~ 576 (701)
..|+..+.+....+...|..++.+...+.+++..++... ..++..-...-...-..+-++-.+..|+.++..
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~--------~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL--------EELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555554444322 112222223333333444555555566666666
Q ss_pred HHHHHHHHHHH
Q 005339 577 QLEKEMNRLQE 587 (701)
Q Consensus 577 qLE~~~~~~~~ 587 (701)
|++.+...++.
T Consensus 121 q~~~~~~~L~~ 131 (314)
T PF04111_consen 121 QYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 181
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.21 E-value=15 Score=39.64 Aligned_cols=103 Identities=15% Similarity=0.259 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (701)
Q Consensus 364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeE 443 (701)
.+|.+++.++++|+.+..... +.|.+++.++......+..-+. ..+.|..++.-|.+....+++.-+-
T Consensus 18 qKIqelE~QldkLkKE~qQrQ--------fQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQ--------FQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 455666666666555444333 4455555555544443333333 4556667777777766666655444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 444 e~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
=...+..-+.++.-||-.+..++..++.++.++.+
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr 120 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKR 120 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666555555555555544444
No 182
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.03 E-value=61 Score=39.17 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (701)
Q Consensus 434 LaelQrkLeEe~aea~eLeqQls~LE~ElkqLk 466 (701)
+..+-.+...++.+..++...++.+-.+++.++
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~r 271 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLR 271 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666555555443
No 183
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.01 E-value=39 Score=36.97 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHH
Q 005339 277 VCAGLSSRLQEYKSENAQLEELLVA-----ERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETL 348 (701)
Q Consensus 277 ~~~RLrk~~~elksr~aqLEell~e-----l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~L 348 (701)
.|--|++...+.+.-...+|..... .++-..+=.+....+...+...+. +.++++ =|.=+..-.+.....|
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~-~aRl~aK~~WYeWR~~ll~gl~~~L 154 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKT-YARLEAKKMWYEWRMQLLEGLKEGL 154 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777787774331 111111111223344455544443 223332 1222233345666677
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
...+..|+.+...+...++.+..-+..+...+..+..+
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e 192 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEE 192 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766666666665555554444444
No 184
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=89.00 E-value=6.1 Score=36.74 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005339 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (701)
Q Consensus 518 E~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~ 593 (701)
-.+..+||.+..-||.-. .+...+...|++.|-.|...|..+..|..+|.|+-+.+..|....+-++.
T Consensus 4 a~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666533 66677889999999999999999999999999999999999888776665
No 185
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.84 E-value=66 Score=39.35 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=32.9
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005339 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH 58 (701)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~ 58 (701)
.||=|-|.-.=|--|.+.+-. +-+|+..=.+|+-.+||||-+++
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh 59 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH 59 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence 588888888878777774322 24677777788888999999888
No 186
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.81 E-value=15 Score=35.51 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=34.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
..+|......++.+++.+|..+.....+.+.+...+..++..+..+++++.+++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555556666777777777777777777666665
No 187
>PF13514 AAA_27: AAA domain
Probab=88.61 E-value=82 Score=40.14 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 449 GELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 449 ~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
..+..++..++..+..+...+..++.++..+
T Consensus 804 ~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 804 ERLQEQLEELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555544443
No 188
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.54 E-value=7.2 Score=40.31 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (701)
++++...+..+.++..++++|.+.+..+.++ ...++.++..++.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~ 167 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3333444444445555555555555554444 4444444444443
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.25 E-value=15 Score=35.50 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=54.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (701)
Q Consensus 273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl 352 (701)
+|.-...||++.+..+...+..++...+.+....+.+...+.....++.+.+..+.+....+.-.+-+++-++.-|.+++
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777777777777777777777777777777777777777777777777666655555555555555443
No 190
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.16 E-value=41 Score=36.15 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA 407 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~ 407 (701)
..+..|++++..++.++.+++.+..-|..=..+ +.=+ +.+|...|..++..-..|..
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665444333333 1223 55555555555544444433
No 191
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.04 E-value=45 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
.++-..+.++.+.++..+..+..+.....+|....-...
T Consensus 217 ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777766666666665554444
No 192
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=87.91 E-value=41 Score=38.68 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 517 lE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
++.++..++.++..|+..+ .+.++.-..++.||..|..++.....++ ....+|-..|..+.+-+...+..
T Consensus 291 Le~qLa~~~aeL~~L~~~~-~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s 369 (434)
T PRK15178 291 FETQLAEAKAEYAQLMVNG-LDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES 369 (434)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443322 0112223555556666655555544333 23455666777777777777766
Q ss_pred HHHHHhhhh
Q 005339 588 VQSEAERSR 596 (701)
Q Consensus 588 ~~~~~~~sr 596 (701)
+.+..+.+|
T Consensus 370 AlaaLE~AR 378 (434)
T PRK15178 370 ALQTLQQGK 378 (434)
T ss_pred HHHHHHHHH
Confidence 665555555
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=14 Score=43.65 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~ae 429 (701)
.++.....++..+...+++++.++..|+..+..+.++ +..|+.+|..+......+...- | +...
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~---------r------ei~~ 478 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKD---------R------EIRA 478 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh---------H------HHHH
Confidence 3444555555666666666666666666666665555 6677777777776665432221 1 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005339 430 ASMALARIQRIADERTAKAGELEQKVAMLE 459 (701)
Q Consensus 430 LseALaelQrkLeEe~aea~eLeqQls~LE 459 (701)
+..-+..++++|.++..++++|+.++..+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456677788888888888887766654
No 194
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.68 E-value=53 Score=36.85 Aligned_cols=121 Identities=11% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005339 277 VCAGLSSRLQEYKSENAQLEELLVAERELSR---------SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (701)
Q Consensus 277 ~~~RLrk~~~elksr~aqLEell~el~ek~~---------~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~ 347 (701)
...-|.+++.+++.+....|..+..-+.+.. ....++..|..++...+..+...+..+... .....+..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 249 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGS--SGKDALPE 249 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcccchh
Confidence 3445555555666666666665555444321 122355555555555554443333322100 00000000
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (701)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E 405 (701)
+ ....-+..++.++.+++.++..+........-. +.+++.+|..++..+..|
T Consensus 250 ~-----~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~-v~~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 250 V-----IANPIIQNLKTDIARAESKLAELSQRLGPNHPQ-YKRAQAEINSLKSQLNAE 301 (444)
T ss_pred h-----hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHH
Confidence 0 111223445555555555555555544443333 444555555555555444
No 195
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.09 E-value=32 Score=33.73 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.|+.++.+|++++.......+.+..++...+..+..+..+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e 60 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE 60 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555444444444444444444444443333
No 196
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.86 E-value=49 Score=35.60 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhhh
Q 005339 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE-----------GNLASLQMNMESIMRNREL 382 (701)
Q Consensus 320 L~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K-----------~rleele~E~~rl~e~l~~ 382 (701)
|...+.++...+..+...++....+...|..++...+.++.-+. -+|..+..+++++.++..+
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555556666666666666555443 2666666666666666555
No 197
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.84 E-value=26 Score=38.79 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=47.5
Q ss_pred HHhhhhhcchHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 260 LKTTISTGQSKEARLARVCAGLSSRLQEY---KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (701)
Q Consensus 260 LrsE~e~l~~ke~qLa~~~~RLrk~~~el---ksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~e 336 (701)
|++.+--+-.++--|...|.-+++++.++ +..+.+|=..|-..++..-...++...||.-+...+++-.+.+-
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql---- 148 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL---- 148 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----
Confidence 33333333344555555555555555443 33344433333333333333333444444444443333222221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (701)
Q Consensus 337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E 372 (701)
+|.+..-+..+.+.+-+.|++|+.+.-.....+-++
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344455555556666666555555554444
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.37 E-value=90 Score=38.17 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (701)
Q Consensus 336 eaLsak~~eie~Le~rl~~Le~el~~~K~rleele 370 (701)
++++...+..+.|..|++.+-+.+....-.++.+|
T Consensus 600 eR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE 634 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 33333444445555555555444433333344444
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.37 E-value=30 Score=38.75 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 286 ~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
+.++.+..+.-.+..............+..|..++..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555555544444333333333333344444444433
No 200
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.29 E-value=30 Score=36.63 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 449 GELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 449 ~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
..|.......+.+...|+.++....
T Consensus 92 ~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 92 ARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443333
No 201
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=86.27 E-value=43 Score=34.36 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM 414 (701)
Q Consensus 335 ~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ 414 (701)
...|..|...++.|+.++..++.-+......|...+........-...-... +..|..-|+.++..+..-...
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl~~a~~~------ 131 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANLANAEQV------ 131 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------
Confidence 3467777788888888888888888888888888877777776666655555 555555566655554321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (701)
Q Consensus 415 ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk 466 (701)
.......|.+-...|+..+.+++.|.+++.....||+..+
T Consensus 132 ------------a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 132 ------------AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222334444556666666666666666555554443
No 202
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.94 E-value=51 Score=34.92 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil 388 (701)
|+.++.+++.+....+.++...+.. +..|+..+..++.+...+..+..+++.++.+|.......+.+ .
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~-----------a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-k 77 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEET-----------AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-K 77 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344444444554444444444332 236666777777777777777777777777766666665444 3
Q ss_pred HHHHHHHHHH
Q 005339 389 QALREELASV 398 (701)
Q Consensus 389 qSLE~eLksl 398 (701)
..|+.++..+
T Consensus 78 ~~Le~e~~e~ 87 (246)
T PF00769_consen 78 EQLEQELREA 87 (246)
T ss_dssp ---HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 203
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=85.76 E-value=80 Score=37.04 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=58.9
Q ss_pred hhhcCCCChhhhhhHHHHHHHHHhhh-------hhcchH--------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 239 ALKADDPPTKEQDQLDEAQGLLKTTI-------STGQSK--------EARLARVCAGLSSRLQEYKSENAQLEELLVAER 303 (701)
Q Consensus 239 ~~~~~ek~~~lqkQLee~n~~LrsE~-------e~l~~k--------e~qLa~~~~RLrk~~~elksr~aqLEell~el~ 303 (701)
++|..++-..+ .|..+++.|+.+- .+|+-+ +-..+++.+++-+--.++..+.-.-|.
T Consensus 121 erk~~~qe~~~--rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~rea------ 192 (531)
T PF15450_consen 121 ERKGSEQEAGL--RLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREA------ 192 (531)
T ss_pred HhhhhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34444443333 5666667777762 112111 223344444444444444444433333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 005339 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALA-AKNSEIETLVSSIDALKKQAA 360 (701)
Q Consensus 304 ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLs-ak~~eie~Le~rl~~Le~el~ 360 (701)
-.|..|+.++..|+.-+.....++-..+..+.+.+. .|.....-.+.++.++....+
T Consensus 193 kl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~e 250 (531)
T PF15450_consen 193 KLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQE 250 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 346677777777777777766666666554543333 344445555556666655544
No 204
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=85.45 E-value=1.2e+02 Score=38.65 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKA 572 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (701)
..++..+..+...+...+..+..+.....
T Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 853 (1047)
T PRK10246 825 EQIQQELAQLAQQLRENTTRQGEIRQQLK 853 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444333
No 205
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.17 E-value=59 Score=34.98 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE 422 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E----~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~e 422 (701)
+|+.+.+.|.-++...|.+.+.-..+ ...|-+.++++ ..|+..+.+-+..|+++-.-=..+-++|-.-+.+=+..
T Consensus 63 dl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt-~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 63 DLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT-HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence 45555555555555555554433333 22333333332 23466666666666665433223334443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 423 LEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
|-.++ +-.+-++..|+|.- .|-.-+..|..+...|+|+|+--.
T Consensus 142 LnqAI----ErnAfLESELdEke----~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 142 LNQAI----ERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHH----HHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22333444444433 333334456677777788775443
No 206
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.68 E-value=74 Score=35.70 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
..++.++..|..+....+..++.+..++.+..
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888887776654
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.31 E-value=72 Score=35.31 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 446 aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
.+-.-|.+++..++.+..-+++.+..|..-+++
T Consensus 196 ~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888888888899999888888874
No 208
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=83.79 E-value=59 Score=33.84 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHH--------HHHHHHHHHhh
Q 005339 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNRE 381 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele--------~E~~rl~e~l~ 381 (701)
.++..||.+|...|.+..+.+. |+-++ ..|++++..++.+-.... .....|++.+-
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~Lr 67 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLR 67 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Confidence 4667778888777776666553 22222 345555555543322111 34667888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 382 LTETRMIQALREELASVERRAEEERA 407 (701)
Q Consensus 382 ~~ekeilqSLE~eLkslq~~le~E~~ 407 (701)
.++.+ +=+||.++--.++++-.|..
T Consensus 68 EkEEr-ILaLEad~~kWEqkYLEEs~ 92 (205)
T PF12240_consen 68 EKEER-ILALEADMTKWEQKYLEESA 92 (205)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88888 67899999999999855533
No 209
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.49 E-value=60 Score=33.74 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (701)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~l 472 (701)
-+..|+..+....+++.-|+.++..++.++..++..+...
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3456777788888889999999999999999999999776
No 210
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.82 E-value=1.3e+02 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHhhhhHHHHHHHHHHHH----HHhhhhh----hhcc--hhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 005339 509 DAENKLSSLEAEVQKMRVEM----AAMKRDA----EHYS--REEHMELEKRYRELTD-LLYYKQTQLETMAS 569 (701)
Q Consensus 509 ~le~kL~slE~elqkLr~e~----~~Lk~ql----e~~~--~~~~~elE~rl~eLtE-~L~eKQ~qlE~L~~ 569 (701)
.|..+|...++.+++|++++ ..-+.+. ...- ...-.+|=.|+++|++ .|-++.+.-..|..
T Consensus 780 ~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN 851 (1104)
T COG4913 780 QLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLN 851 (1104)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 34556777778888888773 2222111 0000 0134678889999975 46666655555543
No 211
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.79 E-value=60 Score=37.07 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 412 TKMAAMEREVELEHRAAEASMALARIQRIADE 443 (701)
Q Consensus 412 Tr~ea~~Re~eLEee~aeLseALaelQrkLeE 443 (701)
-+.....++.++.+..++..++.-+++++..+
T Consensus 91 ~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 91 LRIRSLNEIRELREQKAEFENAELALREMRRK 122 (459)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 34445556666666666666666666555443
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.10 E-value=45 Score=31.36 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEE 404 (701)
Q Consensus 388 lqSLE~eLkslq~~le~ 404 (701)
+..|+..+..+...++.
T Consensus 60 ~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 60 IAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 213
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.77 E-value=1.4e+02 Score=36.23 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 559 eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
.++.++..|+.+....+.-.+.+..|..+.
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665554
No 214
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.72 E-value=33 Score=29.96 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=41.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
|+.++...=+.+..|+.++.. |+.+...|.++-.......+.|..|++++.-+|.-++.++++
T Consensus 9 LE~ki~~aveti~~Lq~e~ee---------------Lke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEE---------------LKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444555555555555555543 334555666666777777778889999999999888887764
No 215
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.91 E-value=1.6e+02 Score=36.27 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+..+.|..++++-.+++.++=++...+++
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 44455555555555555555555554444
No 216
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.84 E-value=1.2e+02 Score=34.67 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 005339 283 SRLQEYKSENAQLEE 297 (701)
Q Consensus 283 k~~~elksr~aqLEe 297 (701)
.....+..+.+.|+.
T Consensus 104 ~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 104 QQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 217
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.71 E-value=1.1e+02 Score=34.07 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq 399 (701)
-+.-+-..|+..+.|.++.+-..+.+..+ .+.+......+.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer-~q~LKkk~~el~ 50 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQER-YQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 35566677778888887777776666555 555554444333
No 218
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.62 E-value=1.3e+02 Score=35.08 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 428 AEASMALARIQRIADERTAK----AGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 428 aeLseALaelQrkLeEe~ae----a~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
..+...+-++.+.+++.... .--|++.+..++.+...+.+++.+++.++...
T Consensus 458 ~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 458 ESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred HhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666555522 23467777777888888888888887766554
No 219
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.33 E-value=18 Score=39.22 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005339 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDA 510 (701)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~l 510 (701)
-.-|++-++.|.++-.++.+|+.|+..|..|- .|.+.+|.. .+..|+..+.||.++++....-
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDW---------IEEECHRVE--------AQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDW---------IEEECHRVE--------AQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666777777766665442 566666654 2225667777888888887776
Q ss_pred HHhhhhHHHHHHHH
Q 005339 511 ENKLSSLEAEVQKM 524 (701)
Q Consensus 511 e~kL~slE~elqkL 524 (701)
++.|......+|+-
T Consensus 137 rssL~ekDkGiQKY 150 (305)
T PF15290_consen 137 RSSLAEKDKGIQKY 150 (305)
T ss_pred HhhhchhhhhHHHH
Confidence 77776666666653
No 220
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.11 E-value=30 Score=33.37 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 272 ~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
.||..+...|...-..+..|+..|...+.++.+......+.+..+...+.+.+..+...+.
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444455566666666777777777777777777777777777777777666666665555
No 221
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=78.98 E-value=1.2e+02 Score=34.19 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE-------ELASVERRAEEERAAHNATKMAAMER--EVEL 423 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~-------eLkslq~~le~E~~aH~aTr~ea~~R--e~eL 423 (701)
.++.+.+.+.+....+++.++..+++++...++. +..|+. =|+-++.+++.=.. + =..+.... ...|
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~-i~~L~~ai~~k~~~lkvaqTRL~~R~~--R-P~vElcrD~~q~~L 322 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN-IEDLEKAIRDKEGPLKVAQTRLENRTQ--R-PNVELCRDPPQYGL 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHhhHhc--C-CchHHHHhhHHHHH
Confidence 4455555555555566666666666555555554 444442 24455555443100 0 01111111 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463 (701)
Q Consensus 424 Eee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~Elk 463 (701)
-.|...+.+.+..++.+|.+.......|......|+.++.
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777776666666666666665543
No 222
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=78.90 E-value=2e+02 Score=36.71 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=7.3
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 005339 451 LEQKVAMLEVECATLQQELQ 470 (701)
Q Consensus 451 LeqQls~LE~ElkqLkQeLq 470 (701)
+..++..+...+..+++++.
T Consensus 729 ~~~~l~~~~~~~~~~~~~~~ 748 (1047)
T PRK10246 729 LHSQLQTLQQQDVLEAQRLQ 748 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 223
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.83 E-value=1.2e+02 Score=34.55 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMN-MESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E-~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a 408 (701)
.++..|.+++..+..+++=.-.| .+-+++.++.-.++ +.-|| ...+|+....|...
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtR-isklE--~~~~Qq~~q~e~~~ 332 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTR-ISKLE--QQQQQQVVQLEGTE 332 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH--HHHhhhhhhhcccc
Confidence 34444444444444433322222 23333333333444 44444 33445554444333
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.36 E-value=47 Score=36.40 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
+...|..++..++.+...++....+.-.+...++-.+....++ .+++...+..+...++
T Consensus 72 e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e-~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 72 EREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE-RDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555554444444 4455544444444443
No 225
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.30 E-value=2e+02 Score=36.46 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=10.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELL 299 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell 299 (701)
..+++++..+++.++..|+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 182 ALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555433
No 226
>PF15294 Leu_zip: Leucine zipper
Probab=78.02 E-value=1e+02 Score=33.62 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 005339 275 ARVCAGLSSRLQEYKSENAQLEE 297 (701)
Q Consensus 275 a~~~~RLrk~~~elksr~aqLEe 297 (701)
...-.||+.....++.+...+|.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~ 153 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEK 153 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444
No 227
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.01 E-value=70 Score=33.77 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.2
Q ss_pred hhHHHH
Q 005339 653 PIARII 658 (701)
Q Consensus 653 P~aRl~ 658 (701)
|.+..+
T Consensus 192 PPMK~C 197 (230)
T PF10146_consen 192 PPMKTC 197 (230)
T ss_pred CCcchh
Confidence 333333
No 228
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=77.83 E-value=96 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ 324 (701)
...+...+..|+..|..+-
T Consensus 36 ~~~i~e~i~~Le~~l~~E~ 54 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEV 54 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444433
No 229
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.20 E-value=2.1e+02 Score=36.21 Aligned_cols=12 Identities=8% Similarity=-0.344 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 005339 662 YLVFVHLFLMYL 673 (701)
Q Consensus 662 Y~vlLHLWV~~V 673 (701)
|--..|-|+---
T Consensus 657 ~~~~~~~~L~~~ 668 (1042)
T TIGR00618 657 QERVREHALSIR 668 (1042)
T ss_pred chhhHHHHHHHH
Confidence 333444444333
No 230
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=1.8e+02 Score=35.44 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=46.6
Q ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 503 lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
++.+.+-+......+..++..+...+..++. ...++...+..|...+..-+++++.+....+.+...|+..-
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk--------~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKK--------KAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444433332 24777888888888888888888888887777777777765
Q ss_pred HHHHHH
Q 005339 583 NRLQEV 588 (701)
Q Consensus 583 ~~~~~~ 588 (701)
.+....
T Consensus 601 ~k~~rl 606 (698)
T KOG0978|consen 601 FKRKRL 606 (698)
T ss_pred HHHHHH
Confidence 443333
No 231
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.08 E-value=1e+02 Score=32.45 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie-~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~e 384 (701)
.-.+-.+-..++..+...+......++.-..+|.+.+.... ..-.+...++..+...+..+..+.....++...+..++
T Consensus 47 ~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le 126 (225)
T COG1842 47 LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALE 126 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666666666655666665553322 12245555555566666655555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 385 TRMIQALREELASVERR 401 (701)
Q Consensus 385 keilqSLE~eLkslq~~ 401 (701)
.. +..++.....+..+
T Consensus 127 ~K-i~e~~~~~~~l~ar 142 (225)
T COG1842 127 QK-IAELRAKKEALKAR 142 (225)
T ss_pred HH-HHHHHHHHHHHHHH
Confidence 55 44444333444333
No 232
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=76.89 E-value=1.1e+02 Score=32.94 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=51.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (701)
.+.+|+.++.++..-++.-.+|+.+ ..+|-.-+.+|++.+.-.|..+=-|..+...-+-+++++..
T Consensus 234 s~Gria~Le~eLAmQKs~seElkss--------q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELKSS--------QEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHh--------HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999888887777743 25666788888888888888888888887777777777543
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.52 E-value=1.3e+02 Score=33.28 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
-...+..++.++...+-.+++...+.+.+++.+.
T Consensus 13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEIE 46 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666555555553
No 234
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.31 E-value=1.1e+02 Score=34.38 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (701)
Q Consensus 354 ~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE 392 (701)
.....+...+..|.++..+....++++...|+-+-+.++
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333456667777888888888888888887777444444
No 235
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.27 E-value=95 Score=31.70 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHh
Q 005339 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEG 364 (701)
Q Consensus 286 ~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie-~Le~rl~~Le~el~~~K~ 364 (701)
.-+.--++.+++.+...+.-..........++..+..........+.....++.+.++.+. ..-.+...++..+..++.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333334445555555555555555555555556555554443 233455555555666666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 005339 365 NLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 365 rleele~E~~rl~e~l~~~eke 386 (701)
.++.+......+...+..++..
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555554444
No 236
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.26 E-value=29 Score=29.52 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 256 ~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
++.-|.+|+-+ +.-+.+.+...++.+-.+|..|.+-..+.+.|..+|..|..++...|
T Consensus 2 lQsaL~~Eira-----------kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRA-----------KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666664 66677777777777777777666666666666666666666655443
No 237
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.68 E-value=1.6e+02 Score=34.16 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
++...|..++.+-.+.+.+....++++++ ..+++..+..++..+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~-kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAE-KKIVERKLQQLQTKLK 392 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 77778888888888888888888887777 6666666666665544
No 238
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.38 E-value=4.5 Score=44.52 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq 399 (701)
+|...+......+..+...+.-+..+...++..++...-. +..|+..+++++
T Consensus 102 ~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~-ItdLe~RV~~LE 153 (326)
T PF04582_consen 102 SLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALN-ITDLESRVKALE 153 (326)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcch-HhhHHHHHHHHh
Confidence 3333333333334444444444444444444444443333 344444444443
No 239
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.07 E-value=79 Score=36.17 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
|..+++++.++-..+...+.-.+.-.+++...+..++...|.++..|+.+...+..+.-+
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444444555555556666666666666666555555444
No 240
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.00 E-value=47 Score=32.73 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~ 569 (701)
+..+..++..++.+... +..++..|+.++..|... .+..++...+.+|+.++...+..++.|..
T Consensus 74 l~~ld~ei~~L~~el~~-------l~~~~k~l~~eL~~L~~~------~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAE-------LKKEVKSLEAELASLSSE------PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445544444444 555555555555554421 22577888888888888888888888876
No 241
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.47 E-value=1.7e+02 Score=33.79 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
+..+.+|+ .++.+++.+..+..+|++++++.+.+--+
T Consensus 245 ~km~kdle-~Lq~aEqsl~dlQk~Lekar~e~rnvave 281 (575)
T KOG4403|consen 245 NKMMKDLE-GLQRAEQSLEDLQKRLEKAREEQRNVAVE 281 (575)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 33444555 45666666666666666666665554333
No 242
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=73.94 E-value=1e+02 Score=30.90 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=68.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS-----VYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~-----~EQ~~l~q~es~~~eaLsak~~eie~Le~rl 352 (701)
+.+|++.+.+++..++..=.....+....+....+++..-..+. ..+.+|..... +.-.|..+...-..|..++
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555555555566666667777766663 34566666665 6667777777777788888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+.|+..+..++.-++.++.=+-++-=-++-+-..
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~d 141 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGD 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888877777777766554443333333333
No 243
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.62 E-value=1.5e+02 Score=32.68 Aligned_cols=50 Identities=26% Similarity=0.225 Sum_probs=33.7
Q ss_pred cCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005339 242 ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEE 297 (701)
Q Consensus 242 ~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEe 297 (701)
|-++....-+.||+++.+|+.=+.. +|+....++++.+.+.+..+..|+.
T Consensus 46 Ar~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~ 95 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQK 95 (301)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777888888888877653 5666666666666666666555555
No 244
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.58 E-value=1.3e+02 Score=31.69 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~ 476 (701)
..+..++++.++.|.+-+.+ .+..+....+++++....=|......+
T Consensus 123 ~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888887777666 355666666666655555444444433
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.35 E-value=1.3e+02 Score=31.46 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
++..+...+...+.+...++..+.+.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555545444
No 246
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.32 E-value=1.3e+02 Score=31.59 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 334 ~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+...+.+.++=..-|.-.|..++.++...+..+..+-....++..++.....+
T Consensus 15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555556666666666666666666666655555554433
No 247
>PLN03188 kinesin-12 family protein; Provisional
Probab=71.20 E-value=3.3e+02 Score=35.58 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.7
Q ss_pred HhhhhHHHHHHHHHHHHHHhhh
Q 005339 512 NKLSSLEAEVQKMRVEMAAMKR 533 (701)
Q Consensus 512 ~kL~slE~elqkLr~e~~~Lk~ 533 (701)
.+....+.|..++.++|..||+
T Consensus 1218 ~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1218 KRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666655553
No 248
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.96 E-value=61 Score=28.06 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (701)
Q Consensus 295 LEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~ 360 (701)
||..+..++.....+..++..-+.++.....++ +.+..++..+-.++..|..++.++.+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER----d~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRER----DSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555554433322 22333333444445555555555554433
No 249
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=70.27 E-value=2.2e+02 Score=33.28 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (701)
Q Consensus 286 ~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l 327 (701)
.++..+..+++..+..++..+..+..++..++..|..++...
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555544443
No 250
>PRK10698 phage shock protein PspA; Provisional
Probab=70.10 E-value=1.4e+02 Score=31.06 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005339 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (701)
Q Consensus 287 elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~ 343 (701)
.+.--++.+++.+...+.-+...-.....++..+...+......+..-..++.++++
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E 84 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE 84 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 333334444444333333333333344455555555555555555444444444443
No 251
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=70.04 E-value=1.9e+02 Score=32.31 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHH
Q 005339 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEAR-IKQLEQELSVYKSEVTK 329 (701)
Q Consensus 251 kQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~r-l~~LQaeL~~EQ~~l~q 329 (701)
+++.+....+..+---++-|+.+....+..++ .+-...-....||+++|+++-..+.+..+ +.+.-.+=.+=..+..+
T Consensus 35 ~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~ 113 (391)
T KOG1850|consen 35 KDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQ 113 (391)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555 33333334568899888888776655552 11111111111122222
Q ss_pred HH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339 330 VE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (701)
Q Consensus 330 ~e---s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E 372 (701)
.+ .++...|+..+..+.-|..+.-.|-+++..+=.++++.+..
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~h 159 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKH 159 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23444444455555555544444444444444444443333
No 252
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.99 E-value=1.2e+02 Score=30.10 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 005339 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS 539 (701)
Q Consensus 507 qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~ 539 (701)
...++..+.....+..+++.....++.+..-|+
T Consensus 107 ~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~ 139 (177)
T PF13870_consen 107 LAKLREELYRVKKERDKLRKQNKKLRQQGGLLG 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333344445556666666666666666554444
No 253
>PRK12704 phosphodiesterase; Provisional
Probab=69.82 E-value=2.3e+02 Score=33.34 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
..+...+..+...++++...+..++++..+...-.+++..
T Consensus 110 ~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333344444444444445555555555444444444444
No 254
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.77 E-value=2e+02 Score=32.47 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005339 396 ASVERRAEE 404 (701)
Q Consensus 396 kslq~~le~ 404 (701)
..|++.++.
T Consensus 149 eqL~QQiEF 157 (561)
T KOG1103|consen 149 EQLQQQIEF 157 (561)
T ss_pred HHHHHHHHH
Confidence 333333333
No 255
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.50 E-value=2.4e+02 Score=33.28 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=5.0
Q ss_pred hHhHhHhhhcc
Q 005339 642 AVRATRFLWRY 652 (701)
Q Consensus 642 sir~g~fLRRy 652 (701)
...++.+|++.
T Consensus 480 ~~~~~~~l~~l 490 (563)
T TIGR00634 480 AQAIAKKLAQL 490 (563)
T ss_pred HHHHHHHHHHH
Confidence 33444555543
No 256
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.78 E-value=1.6e+02 Score=30.89 Aligned_cols=28 Identities=29% Similarity=0.159 Sum_probs=17.5
Q ss_pred hHHHHHHHhHHhhhhHhHhHhhhcchhHH
Q 005339 628 SVQLQKAAKLLDSGAVRATRFLWRYPIAR 656 (701)
Q Consensus 628 ~rrvk~Aa~~lDs~sir~g~fLRRyP~aR 656 (701)
.--++-++.++.-++..+|+=|+ ||+.-
T Consensus 198 saALgyvahlv~lls~yL~v~Lp-y~i~~ 225 (302)
T PF10186_consen 198 SAALGYVAHLVSLLSRYLGVPLP-YPITP 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC-CCccc
Confidence 34566666677777776666665 66443
No 257
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=68.35 E-value=1.4e+02 Score=33.06 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339 257 QGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV----------AERELSRSYEARIKQLEQELSVYKSE 326 (701)
Q Consensus 257 n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~----------el~ek~~~Le~rl~~LQaeL~~EQ~~ 326 (701)
|.+|+-+++--+....=|-...-+==-....|...+..||+.+- ..+-....|......|+.+|++.+-.
T Consensus 9 N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 9 NQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339 327 VTKVESNLAEALAAKNSEIETLV------SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (701)
Q Consensus 327 l~q~es~~~eaLsak~~eie~Le------~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (701)
-.+.-.-.+.. |++...-+. +++..|+.++++++-+|.=++.-... |.+.+.-+...|++|+.
T Consensus 89 aNRVA~vvANE---WKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAka--------EaQLkeK~klRLK~LEe 157 (351)
T PF07058_consen 89 ANRVATVVANE---WKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKA--------EAQLKEKLKLRLKVLEE 157 (351)
T ss_pred hhhhhhhhccc---ccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 005339 401 RA 402 (701)
Q Consensus 401 ~l 402 (701)
++
T Consensus 158 ~L 159 (351)
T PF07058_consen 158 GL 159 (351)
T ss_pred hc
No 258
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=67.64 E-value=2.5e+02 Score=32.82 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (701)
Q Consensus 285 ~~elksr~aqLEell~el~ek~~~Le~rl~~LQae 319 (701)
+..|+-.+.+-+..+..++-...-|+.++..||-.
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 33333334444444444444455555555555544
No 259
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.50 E-value=50 Score=38.32 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005339 292 NAQLEE 297 (701)
Q Consensus 292 ~aqLEe 297 (701)
+.+|++
T Consensus 80 l~~l~~ 85 (525)
T TIGR02231 80 IRELEA 85 (525)
T ss_pred HHHHHH
Confidence 333333
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.42 E-value=1.9e+02 Score=31.38 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (701)
Q Consensus 410 ~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek 482 (701)
+..+..+..|-.++.+-...+..++...+.. +..++.++..+..|...|..+++.-..+++|.++.
T Consensus 147 r~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~-------~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKR 212 (267)
T PF10234_consen 147 REERQRALARPLELNEIEKALKEAIKAVQQQ-------LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKR 212 (267)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444433333334444443333 34455555555555555555555555555555433
No 261
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.06 E-value=1.2e+02 Score=35.55 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (701)
Q Consensus 249 lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~ 328 (701)
-.++++++...|+- ..+|-......|--|.+++....+....+++. .+.+..++..||.+|...+.
T Consensus 418 Y~~RI~eLt~qlQ~----adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee-------L~~a~~~i~~LqDEL~TTr~--- 483 (518)
T PF10212_consen 418 YMSRIEELTSQLQH----ADSKAVHFYAECRALQKRLESAEKEKESLEEE-------LKEANQNISRLQDELETTRR--- 483 (518)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh---
Confidence 34455554444432 23344555556777777766666665555553 23333455555556555444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (701)
Q Consensus 329 q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K 363 (701)
.|.++++.+.+-+..|-++|.....++..+|
T Consensus 484 ----NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 484 ----NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666666655655555
No 262
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=66.77 E-value=3e+02 Score=33.37 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA--HNATKMAAMEREVELE 424 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a--H~aTr~ea~~Re~eLE 424 (701)
.+..++..++.++.........++.-...+..++ ..=++.--++.|+-+.+++-.+..- .-..-..+-.|+..+.
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r---~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~ 458 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR---DDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSD 458 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4445555555555555555444544444444333 3334555667788888877766332 1122222333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 425 ee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
.- .+..+.+-+.+.+..+..+ =..|...+-.+|+.+..+...+
T Consensus 459 ~P------~l~~lR~Ala~Di~~L~~~------~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 459 SP------QAVAVRKAIAQDIERLKAA------PSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred Cc------chHHHHHHHHHHHHHHhcC------CcCCHHHHHHHHHHHHHHHhhC
Confidence 11 1223333333333222211 1345566666666666666655
No 263
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.31 E-value=1.3e+02 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rle 367 (701)
.++.+|-.=+.-++.++...|.||.
T Consensus 84 ~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 84 SELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 264
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.18 E-value=2e+02 Score=31.20 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.0
Q ss_pred CCCCCcccCCCCCccccCCCCCCCCC
Q 005339 150 ATPNGEILNENDSDVHLNHPPSPLPP 175 (701)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (701)
.-+||+|.|+.+.-+.-.-|+|++|.
T Consensus 26 ~~s~~dl~d~e~d~~~s~~~A~~~~t 51 (330)
T KOG2991|consen 26 RRSFGDLEDDEDDIFGSTTVAPGVRT 51 (330)
T ss_pred hhhccCccccccccccCCCCCCCCcc
Confidence 66899999999988777788886654
No 265
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.09 E-value=2e+02 Score=31.07 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 267 l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
|..++.+++....+......+...-....+..-..+.++.+.++.++..|...+..++.
T Consensus 199 L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 199 LTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444433333333333333333444444444444444444444333
No 266
>PRK11519 tyrosine kinase; Provisional
Probab=65.87 E-value=3.1e+02 Score=33.34 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=15.7
Q ss_pred hhhhhhhhccccccccc-ccccc
Q 005339 91 TLAVEKETITTGKTQKN-GEQQQ 112 (701)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~ 112 (701)
.+.+|.|.|.|..+... .+++-
T Consensus 86 ~~~tEieILkSr~v~~~VV~~L~ 108 (719)
T PRK11519 86 ASDAEIQLIRSRLVLGKTVDDLD 108 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHhC
Confidence 57788899999888864 44443
No 267
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=65.85 E-value=3.5e+02 Score=33.85 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=64.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-TETRMIQALREELASVERRAEEERAAHNATKMAA 416 (701)
Q Consensus 338 Lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea 416 (701)
...|.-+|.+|+.-+..-+=..+.++..-+=.++.++.|.-+... ++++ ..+|-++.+..-.+.. -..+
T Consensus 924 ~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~-----~ael~eleqk~le~~e-----Dea~ 993 (1424)
T KOG4572|consen 924 IEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKE-----FAELIELEQKALECKE-----DEAF 993 (1424)
T ss_pred HhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHhh-----hHHH
Confidence 344555555555555555555555554444444444444433332 2222 1222222222111111 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HH-------HHHHHHHHHHHHHHHHHhccc
Q 005339 417 MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAML--------EV-------ECATLQQELQDMEARLKRGQK 481 (701)
Q Consensus 417 ~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~L--------E~-------ElkqLkQeLq~lE~e~~r~qe 481 (701)
.+++.++|-++....-.+.+.-++++.-.++..+++..+-.+ +. --.++..++...+.+..+.+.
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~ 1073 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKD 1073 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhh
Confidence 345666666665555555555555555555544444333221 11 123445566666777776665
Q ss_pred CChHHHH
Q 005339 482 KSPEEAN 488 (701)
Q Consensus 482 k~~~ea~ 488 (701)
......+
T Consensus 1074 ~~~edra 1080 (1424)
T KOG4572|consen 1074 GKCEDRA 1080 (1424)
T ss_pred hhhhhHH
Confidence 5555444
No 268
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.84 E-value=2.6e+02 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=11.5
Q ss_pred CCCCCcccCCCCCccc
Q 005339 150 ATPNGEILNENDSDVH 165 (701)
Q Consensus 150 ~~~~~~~~~~~~~~~~ 165 (701)
-+=||-.-|.-++|+|
T Consensus 133 ~efNGk~Fn~le~e~C 148 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPEVC 148 (493)
T ss_pred HHcCCCcCCCCCccce
Confidence 5567887777777765
No 269
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.64 E-value=81 Score=27.30 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.++..|+++++.+.+++.....-...+-.|.+.+...+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333
No 270
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=65.08 E-value=1.6e+02 Score=29.59 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred hhhchhhHHhhhhcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHH
Q 005339 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQ 286 (701)
Q Consensus 229 ~~~~~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~ 286 (701)
.++++-+.+...+.++.+..+..-++++...|.........+..+|..-..+|.....
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~ 64 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 3455666666666666666666666666655555544444444444444444444444
No 271
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.74 E-value=1.8e+02 Score=30.10 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKN 342 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~ 342 (701)
....++..+...+......+..-..++.+++
T Consensus 53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~ 83 (219)
T TIGR02977 53 DKKELERRVSRLEAQVADWQEKAELALSKGR 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3334444444444444444443444444333
No 272
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.32 E-value=60 Score=34.33 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
.+|.-++++...+-.+|...+..++.++...+.+|..++.+..++
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666665555555443
No 273
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.12 E-value=3.4e+02 Score=33.11 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH--HHHHHHHHHH
Q 005339 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--QAIQMQAWQD 498 (701)
Q Consensus 421 ~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~--q~~qLk~lke 498 (701)
..|.+....+...+-.+....++++++..++-.|+..+..++-.. .-.-........ ....|..++.
T Consensus 99 ~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~-----------~~~~~~~~~D~~dlsl~kLeelr~ 167 (660)
T KOG4302|consen 99 GTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP-----------EDLPSFLIADESDLSLEKLEELRE 167 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------ccCCcccccCcccccHHHHHHHHH
Confidence 356666667777788888888888888877777766665443221 000001100000 1224555555
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 005339 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT---------DLLYYKQTQLETMAS 569 (701)
Q Consensus 499 EL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLt---------E~L~eKQ~qlE~L~~ 569 (701)
.|+.+++.... .-.++..++.+++.+-..|...|+..-+.++..+..-. +.+..-+..++.|.+
T Consensus 168 ~L~~L~~ek~~-------Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~ 240 (660)
T KOG4302|consen 168 HLNELQKEKSD-------RLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKE 240 (660)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHH
Confidence 56655555433 33334444444444444443333322233433333322 234444456666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 005339 570 EKAAAEFQLEKEMNRL 585 (701)
Q Consensus 570 Er~sL~~qLE~~~~~~ 585 (701)
++.-..-.|+.+..++
T Consensus 241 ~k~qr~~kl~~l~~~~ 256 (660)
T KOG4302|consen 241 EKKQRLQKLQDLRTKL 256 (660)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555544443
No 274
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.80 E-value=2e+02 Score=30.38 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005339 257 QGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (701)
Q Consensus 257 n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~ 311 (701)
...|-.+++.|..|...-..-..++.........+...|+..+..+......+..
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~ 108 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIE 108 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555665555555555555555555555555555555555544444444443
No 275
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=63.45 E-value=1.4e+02 Score=28.30 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 289 ksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
.+...+|+..+..++.-......++..|++.+..
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444443333
No 276
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.38 E-value=2.7e+02 Score=31.80 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
++..+.+.+.+.+.|.+.+++++.-+.+-| ..+ +.+|.-+|..++.+++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~E-i~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELH---QNE-IYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHhHHHHHH
Confidence 445555666777777777776654433333 344 5666666666666654
No 277
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.38 E-value=2.8e+02 Score=31.95 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
-.|..+-.++...|..-.--.+.|..|.-+|..|||...
T Consensus 416 ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~ 454 (542)
T KOG0993|consen 416 QLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKER 454 (542)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777888899999999998843
No 278
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.10 E-value=60 Score=33.04 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 283 k~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
+.++-+...+..|++.++.++.-|+.++++|..|+..|..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4566667778888888888888888888888777777754
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.97 E-value=96 Score=26.41 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 005339 316 LEQELSVYK 324 (701)
Q Consensus 316 LQaeL~~EQ 324 (701)
||.+|..|-
T Consensus 2 lQsaL~~Ei 10 (61)
T PF08826_consen 2 LQSALEAEI 10 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 344444333
No 280
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.80 E-value=4.2e+02 Score=33.78 Aligned_cols=150 Identities=16% Similarity=0.243 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------hHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL------SRSYEA-----RIKQLEQELSVYKSEVTKVESNLAEAL 338 (701)
Q Consensus 270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek------~~~Le~-----rl~~LQaeL~~EQ~~l~q~es~~~eaL 338 (701)
++.+|...|..=...+.-++-++..|+...-..+++ ...|+. ....-..++. ++.+........+
T Consensus 189 ~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~----~~k~~~~r~k~~~ 264 (1072)
T KOG0979|consen 189 DEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYN----AYKQAKDRAKKEL 264 (1072)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHH----HHHHHHHHHHHHH
Confidence 344555555555555555555555555544433332 222222 1111122222 2333333344444
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-------ETRMIQALREELASVERRAEEERAAHNA 411 (701)
Q Consensus 339 sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~-------ekeilqSLE~eLkslq~~le~E~~aH~a 411 (701)
-.....+..+......|+.+......+++.+..++..+..++.++ +++ +..+...+.+++.+.+.-...--.
T Consensus 265 r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~-v~~~~~~le~lk~~~~~rq~~i~~ 343 (1072)
T KOG0979|consen 265 RKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE-VEEKKNKLESLKKAAEKRQKRIEK 343 (1072)
T ss_pred HHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777777777776666666653 333 444445566666655543333333
Q ss_pred HHHHHHHHHHHHH
Q 005339 412 TKMAAMEREVELE 424 (701)
Q Consensus 412 Tr~ea~~Re~eLE 424 (701)
++....+....|+
T Consensus 344 ~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 344 AKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHhhhh
Confidence 4444444444443
No 281
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.53 E-value=1.4e+02 Score=31.52 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 557 LYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 557 L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
+..-+.+|..+..|...+..|+..+.
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 282
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.23 E-value=2.4e+02 Score=30.94 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.4
Q ss_pred hcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 266 ~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
-|+.||.-++-+++||++....+.-|- .+|..|-.+|.++|+.--..+
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRe------------------tEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRE------------------TEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888765554442 245555566666665444333
No 283
>PLN02939 transferase, transferring glycosyl groups
Probab=62.08 E-value=4.3e+02 Score=33.68 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=7.0
Q ss_pred CCcccCCCCC
Q 005339 153 NGEILNENDS 162 (701)
Q Consensus 153 ~~~~~~~~~~ 162 (701)
||++.|-++.
T Consensus 72 ~~~~~~~~~~ 81 (977)
T PLN02939 72 NGQLENTSLR 81 (977)
T ss_pred cccccccccc
Confidence 6777777763
No 284
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.03 E-value=1.8e+02 Score=29.20 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 517 lE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
++......|..+....+.+..|+...-.+.=...+.+.-.|.-++.+-..|...|+.|+.+|..+..-.
T Consensus 53 Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~ti 121 (159)
T PF05384_consen 53 LEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETI 121 (159)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544543333333334555666666666777777777777777776665443
No 285
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=60.97 E-value=2.1e+02 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 308 SYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
.|+..+.+-+..+...+..+..+.
T Consensus 51 ~Lq~qLlq~~k~~~~l~~eLq~l~ 74 (206)
T PF14988_consen 51 ELQDQLLQKEKEQAKLQQELQALK 74 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344444444444444444444
No 286
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=60.91 E-value=3.2e+02 Score=31.81 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChH-HHHHHHHHHHHHHHHHHHHHh
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQG 506 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~-ea~q~~qLk~lkeEL~~lRq~ 506 (701)
..|..||..|.|.+++ ..+|+++...|-.--+..+.=+.+.+....+.= .++ ..-+ +.++-.||..+|-.
T Consensus 330 ~al~~A~~GhaR~lEq----YadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg--~kG~~~rF---~~slaaEiSalr~e 400 (488)
T PF06548_consen 330 DALQRAMEGHARMLEQ----YADLQEKHNDLLARHRRIMEGIEDVKKAAAKAG--VKGAESRF---INSLAAEISALRAE 400 (488)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHH---HHHHHHHHHHHHHH
Confidence 4445555555555542 456666666655555555555555555444431 111 1111 22344455544432
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEH--YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 507 qr~le~kL~slE~elqkLr~e~~~Lk~qle~--~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
.|.+-..|+.+-+.|+.|+-. -..+...+|=-|+++--+-...-|.+.-.++.|..-+-.|++.+..+
T Consensus 401 ----------rEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 401 ----------REKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred ----------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666511 11234688889999999999999999999999999999999999988
Q ss_pred HHHH
Q 005339 585 LQEV 588 (701)
Q Consensus 585 ~~~~ 588 (701)
.+.+
T Consensus 471 h~~E 474 (488)
T PF06548_consen 471 HKME 474 (488)
T ss_pred HHHH
Confidence 8765
No 287
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.50 E-value=2.9e+02 Score=31.06 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=4.5
Q ss_pred HHHHHHHHhH
Q 005339 449 GELEQKVAML 458 (701)
Q Consensus 449 ~eLeqQls~L 458 (701)
..|..+++.|
T Consensus 249 ~~L~~~lslL 258 (388)
T PF04912_consen 249 NELERQLSLL 258 (388)
T ss_pred HHHHHHHHhc
Confidence 3444444444
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.29 E-value=2e+02 Score=29.28 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=16.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005339 273 RLARVCAGLSSRLQEYKSENAQLEELL 299 (701)
Q Consensus 273 qLa~~~~RLrk~~~elksr~aqLEell 299 (701)
..+.+..+|+-.+..|+++++-||..+
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666644
No 289
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.94 E-value=80 Score=28.67 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
|-.+...++.++...+..+......+......+ ...+.|..+...+..++..++..+.+++.++..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666555442222 3445555555555555555555555555555444
No 290
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.81 E-value=2.8e+02 Score=30.50 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005339 546 LEKRYREL 553 (701)
Q Consensus 546 lE~rl~eL 553 (701)
|++.|..|
T Consensus 240 ~~k~ik~l 247 (294)
T COG1340 240 LEKKIKAL 247 (294)
T ss_pred HHHHHHHH
Confidence 33333333
No 291
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.54 E-value=2.2e+02 Score=29.08 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~ 477 (701)
..++..++.....+..|+.++..++..+..++.+...+.....
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555544444333
No 292
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=58.44 E-value=62 Score=32.85 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l 327 (701)
+.|..|......|..+++. ...-|+.....+..++..||.. +.+.+.|.++...|+.+|..-+..+
T Consensus 102 QVqqeL~~tf~rL~~~Vd~----------~~~eL~~eI~~L~~~i~~le~~----~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ----------TKNELEDEIKQLEKEIQRLEEI----QSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777764 5666666777777777777763 4457778888888888887766554
No 293
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=57.90 E-value=3.7e+02 Score=31.60 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re 420 (701)
..++++.|+..+.++..=++....++..+..-+.+=-..++.-|..|+...+..+.+|+...+-|+.. +..+|....
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~---m~EEAiqe~ 214 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG---MQEEAIQEI 214 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHH
Confidence 56678888888888888888888888888877777666777779999999999999999999888764 555555554
Q ss_pred HHH
Q 005339 421 VEL 423 (701)
Q Consensus 421 ~eL 423 (701)
.++
T Consensus 215 ~dm 217 (508)
T PF00901_consen 215 ADM 217 (508)
T ss_pred hcc
Confidence 444
No 294
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.80 E-value=3.7e+02 Score=31.52 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=5.7
Q ss_pred HhHhHhhhcch
Q 005339 643 VRATRFLWRYP 653 (701)
Q Consensus 643 ir~g~fLRRyP 653 (701)
+|+..++|||-
T Consensus 352 LrtI~~~Wr~e 362 (475)
T PRK10361 352 LRTIANLWRYE 362 (475)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 295
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.70 E-value=1.3e+02 Score=26.28 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 005339 366 LASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 366 leele~E~~rl~e~l~~~eke 386 (701)
-..+..++.+++++++.-..+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 296
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.28 E-value=1.6e+02 Score=31.43 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
..+=.+.|.|..++|+|+++..+.+..+..+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~E 115 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRRE 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777776655554444444
No 297
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.24 E-value=3.6e+02 Score=31.20 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (701)
Q Consensus 492 qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e 527 (701)
.+.-++.|+.++|...+.++ .+...++.+++.+
T Consensus 254 hi~~l~~EveRlrt~l~~Aq---k~~~ek~~qy~~E 286 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQ---KSYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34557888888876654321 2244444444444
No 298
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.84 E-value=51 Score=28.23 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q 329 (701)
|..++.++..+++-+|+.+..+.+.....+..|..|+..+.....-+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555555555555555544443333
No 299
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=56.67 E-value=3.5e+02 Score=33.06 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHH---HHhhhhHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLAR---VCAGLSSRLQ---EYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~---~~~RLrk~~~---elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~ 321 (701)
.+...+-.....|...........++|.. ....|.+.+. .+...+..|+.+.....++...|++++..|.+.+.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELK 258 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 322 ~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
...........++.+.+.....++..|......+.... ..+..-.++.++...++.++
T Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 259 ELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
No 300
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.93 E-value=4.3e+02 Score=31.63 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKA 572 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (701)
...+.|+......|.+|.+.++.|-.|+.
T Consensus 531 ~~tkarl~stqqslaEke~HL~nLr~err 559 (654)
T KOG4809|consen 531 DATKARLASTQQSLAEKEAHLANLRIERR 559 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777777778888888888777663
No 301
>PF14992 TMCO5: TMCO5 family
Probab=55.81 E-value=3.1e+02 Score=30.03 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT---------ETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~---------ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~ 417 (701)
+|++.++.+...-..+=.++.+.+..+.+|..+++.. ++.+....+..|+.++
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le------------------ 69 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELE------------------ 69 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHH------------------
Confidence 5556666666666666666666666666666665552 1111111222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 418 EREVELEHRAAEASMALARIQRIADERT 445 (701)
Q Consensus 418 ~Re~eLEee~aeLseALaelQrkLeEe~ 445 (701)
..-..||..+..++..+.++|++.++.-
T Consensus 70 ~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 70 LETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred hhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 1234566667777777788888877655
No 302
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.31 E-value=2.2e+02 Score=34.03 Aligned_cols=14 Identities=29% Similarity=0.076 Sum_probs=8.1
Q ss_pred hHHhhhhcCCCChh
Q 005339 235 RKQQALKADDPPTK 248 (701)
Q Consensus 235 ~~~~~~~~~ek~~~ 248 (701)
+.-.++||.+....
T Consensus 260 tqgienkAf~~nt~ 273 (832)
T KOG2077|consen 260 TQGIENKAFDRNTE 273 (832)
T ss_pred cccchhhccccccc
Confidence 33456677776553
No 303
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=54.51 E-value=33 Score=31.67 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
.+|...+++++++..-++.++.+++.++++++.+++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999887766
No 304
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.47 E-value=4.2e+02 Score=31.19 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005339 395 LASVERR 401 (701)
Q Consensus 395 Lkslq~~ 401 (701)
|+.++..
T Consensus 154 ~~~~~~~ 160 (514)
T TIGR03319 154 LEEVEEE 160 (514)
T ss_pred HHHHHHH
Confidence 3333333
No 305
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.31 E-value=76 Score=33.85 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~ 476 (701)
|...||+....-..++.+++..++.-..++..|+.+++.+.+++++++++-.++-.++
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443344555666666666666666666666666666666655554443333
No 306
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=53.96 E-value=2.7e+02 Score=28.76 Aligned_cols=25 Identities=8% Similarity=-0.062 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 358 QAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~ 382 (701)
.+...+..+..+.....++...+..
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~ 63 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSR 63 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333
No 307
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.84 E-value=41 Score=37.67 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 355 LKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+...+..++.+++.++..+..+.+....++++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444444444444444444444
No 308
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.55 E-value=3.4e+02 Score=29.82 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHH
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELT--------ETRMIQALREELASVERRAE 403 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~--------ekeilqSLE~eLkslq~~le 403 (701)
...+..+++++...+.++.+++..+...+.+.... ....++.|+.++..++..+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777766665441 12234455555555554443
No 309
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=53.26 E-value=5.7e+02 Score=32.29 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHH
Q 005339 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-------TETRMIQALREELASVERRA 402 (701)
Q Consensus 330 ~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-------~ekeilqSLE~eLkslq~~l 402 (701)
.++++.....+....+.-++..+..++......+...++.+.+.+.++..+-. .--.+++.+..-.+-.|...
T Consensus 551 ~~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~ 630 (984)
T COG4717 551 VQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKA 630 (984)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 005339 403 EEE-----RAAHNAT-KMAAMEREVELEHRAAEASMALARIQRIADERT--AKAGE-LEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 403 e~E-----~~aH~aT-r~ea~~Re~eLEee~aeLseALaelQrkLeEe~--aea~e-LeqQls~LE~ElkqLkQeLq~lE 473 (701)
++. ...|+.| ......=...++.....++-.....++...-+. -++.- ++.-+.-...-...++++++..+
T Consensus 631 EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~ 710 (984)
T COG4717 631 ELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHR 710 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHH
Q 005339 474 ARLKRGQK--KSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 551 (701)
Q Consensus 474 ~e~~r~qe--k~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~ 551 (701)
.++..+-. .+..+....+ ....-++.+..++++.+++..++..-.+--+|-..+.+ ...-|..++
T Consensus 711 kei~dLfd~~~~~~ed~F~e--------~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~-----~~~~e~E~~ 777 (984)
T COG4717 711 KEILDLFDCGTADTEDAFRE--------AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQ-----RELKEEELA 777 (984)
T ss_pred HHHHHHHhhcccCcHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhh-----hhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 552 ELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (701)
Q Consensus 552 eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (701)
.|-+.+..-..+++.+.+.+.++.++++.++.
T Consensus 778 ~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~ 809 (984)
T COG4717 778 LLEEAIDALDEEVEELHAQVAALSRQIAQLEG 809 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 310
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=53.20 E-value=4.5e+02 Score=31.14 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 314 KQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV---------------SSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 314 ~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le---------------~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
.++..-....+.++...+..+..+|+++.+.+..-+ +.=..+..+..++-.++-++-+|+-.-.-
T Consensus 109 ~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l 188 (531)
T PF15450_consen 109 TQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFL 188 (531)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555555567777776666655444 12233444455555555555555444433
Q ss_pred Hhhh-----HHHHHHHHHHHHHHHH
Q 005339 379 NREL-----TETRMIQALREELASV 398 (701)
Q Consensus 379 ~l~~-----~ekeilqSLE~eLksl 398 (701)
+.+. +.+. ..++|..+++.
T Consensus 189 ~reakl~~~lqk~-f~alEk~mka~ 212 (531)
T PF15450_consen 189 KREAKLCSFLQKS-FLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3333 2444 34566555554
No 311
>PRK02119 hypothetical protein; Provisional
Probab=53.17 E-value=78 Score=27.63 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
+..++..|..+++-.|+.+..+.+....-+..|..|+..|.....
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777666666666666666666666555443
No 312
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.87 E-value=41 Score=32.47 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
.--=++++.+++.||-..+.+.-....|..+|..||-+|.+++.-+...
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344688888999999888888888889999999999999988877653
No 313
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.81 E-value=4.5e+02 Score=30.99 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
-..++.++..+.+++... ...|..-|....-+|+...
T Consensus 348 le~L~~el~~l~~~l~~~---a~~Ls~~R~~~a~~l~~~v 384 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKA---AVALSLIRRKAAERLAKRV 384 (563)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345555666666665444 4444555555555555544
No 314
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.59 E-value=2.5e+02 Score=28.05 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
|.....+|+.+..+++..+.+.+..+...- +.+.++.+.+..+++.++.++++|...+
T Consensus 55 L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E--------------d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 55 LREDNEQLETQYEREKELRKQAEEELLELE--------------DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666665555444222 3444455555555666666666655333
No 315
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.43 E-value=82 Score=27.37 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
+..++.+|..+++-.|+.+..+.+.....+..|..|+..|.....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777776666666666666666666665555443
No 316
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.42 E-value=4.3e+02 Score=30.67 Aligned_cols=36 Identities=14% Similarity=-0.050 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
-|+.+.+.+...+..+|...+++.++..+..+.+..
T Consensus 308 qleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 308 QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 444444444445555555555555555554444443
No 317
>PRK00295 hypothetical protein; Provisional
Probab=52.41 E-value=96 Score=26.65 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
+..++.++..+++-.|+.+..+.+.....+..|..|+..|....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777666666666655555655555555443
No 318
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=51.42 E-value=1.9e+02 Score=26.33 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~ 361 (701)
.-.+........-||.++.....++..|.+....+...+.....-+..++. +...+...+..+..|+.-...|+.=.++
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~-~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP-YLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677889988888888888888888888888777776666665 4434444444555555544444444444
Q ss_pred HHhHH
Q 005339 362 SEGNL 366 (701)
Q Consensus 362 ~K~rl 366 (701)
++.++
T Consensus 92 LE~k~ 96 (99)
T PF10046_consen 92 LESKF 96 (99)
T ss_pred HHHHh
Confidence 44443
No 319
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.35 E-value=4.5e+02 Score=30.58 Aligned_cols=86 Identities=26% Similarity=0.255 Sum_probs=41.0
Q ss_pred HhhhhcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHH---HHHHHhHHHH
Q 005339 237 QQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE---YKSENAQLEELLV---AERELSRSYE 310 (701)
Q Consensus 237 ~~~~~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~e---lksr~aqLEell~---el~ek~~~Le 310 (701)
+|-.++-++.+.+-+-|+.+++ +|.+ |.++--+|.++..+ ...+.-.||..+. ++++....++
T Consensus 235 ~Qnk~akehv~km~kdle~Lq~---aEqs--------l~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e 303 (575)
T KOG4403|consen 235 RQNKKAKEHVNKMMKDLEGLQR---AEQS--------LEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVE 303 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHHH--------HHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchh
Confidence 3444556667777776666654 2322 33344444444333 2223333444333 2233222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 311 ARIKQLEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (701)
..... .+|...+.++...+.++.
T Consensus 304 ~e~~r--kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 304 NETSR--KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 32222 477777777777665444
No 320
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.95 E-value=3.1e+02 Score=28.57 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (701)
Q Consensus 516 slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~ 576 (701)
.+..++..+..++..++.-+.. .......|..|+..++-.+...+..+..|..-.+..+.
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s-~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLS-NNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544443332211 12345777777777777777777777777777666543
No 321
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.92 E-value=85 Score=34.34 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+..+.++|.+++..|+.+-.++|.++++++.|++.+++-+..
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999998877655
No 322
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.66 E-value=1.9e+02 Score=25.99 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (701)
|+.||...=+.|.-|+-++.+||..- ..+...+..+...-..-....+.|..|.+++.-+|--++-+++
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn--------~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKN--------NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444555555555544321 2222223333333333445566677788888877777666554
No 323
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.52 E-value=2.3e+02 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
.++..++....+...+.+++..+......+...+...+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~ 41 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREIN 41 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777888888877777666555555554443
No 324
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=50.23 E-value=2.4e+02 Score=28.19 Aligned_cols=64 Identities=27% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 397 SVERRAEEERAAHNATKMAAMEREV--------------ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEV 460 (701)
Q Consensus 397 slq~~le~E~~aH~aTr~ea~~Re~--------------eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ 460 (701)
.+...++.|..+|..|+.-+..... .|+.+......++..++.+...+..+.+.|..+|+.++.
T Consensus 7 ~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ 84 (153)
T PF15175_consen 7 AVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIES 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543333322 234555666777888888888888888888888887753
No 325
>PRK04406 hypothetical protein; Provisional
Probab=49.42 E-value=94 Score=27.31 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
+..++..|..+++-+|+.+..+.+.....+..|..|+..|....
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655555555555555554443
No 326
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=49.17 E-value=5.3e+02 Score=30.76 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=8.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHH
Q 005339 277 VCAGLSSRLQEYKSENAQLEE 297 (701)
Q Consensus 277 ~~~RLrk~~~elksr~aqLEe 297 (701)
+..-|.+.+........|.+.
T Consensus 165 ~~~~lEk~Le~i~~~l~qf~~ 185 (570)
T COG4477 165 AAPELEKKLENIEEELSQFVE 185 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 327
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.44 E-value=2.4e+02 Score=31.03 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=10.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 005339 508 RDAENKLSSLEAEVQKMRVEM 528 (701)
Q Consensus 508 r~le~kL~slE~elqkLr~e~ 528 (701)
+++-..|+.+.+.+++...++
T Consensus 279 rdanrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 279 RDANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555544
No 328
>PRK00106 hypothetical protein; Provisional
Probab=48.38 E-value=5.4e+02 Score=30.63 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=2.2
Q ss_pred Hhhhcc
Q 005339 647 RFLWRY 652 (701)
Q Consensus 647 ~fLRRy 652 (701)
.++++|
T Consensus 403 ~ll~~~ 408 (535)
T PRK00106 403 EFARKY 408 (535)
T ss_pred HHHHHc
Confidence 333333
No 329
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.57 E-value=6.1e+02 Score=30.97 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=15.4
Q ss_pred chhhhhhhhccccccccc-ccccc
Q 005339 90 ATLAVEKETITTGKTQKN-GEQQQ 112 (701)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-~~~~~ 112 (701)
..+.+|.|.|.|..++.. .+.+.
T Consensus 85 ~~~~teieiLkSr~v~~~VV~~L~ 108 (726)
T PRK09841 85 PESAPEIQLLQSRMILGKTIAELN 108 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhC
Confidence 345667788888888764 44444
No 330
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.33 E-value=1.5e+02 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
...+..++..+.+++.....++..+..+.+.+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777766654
No 331
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=47.22 E-value=3.5e+02 Score=28.10 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 288 lksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rle 367 (701)
+...+.+||. ....|+..+..+..+....-..|...|......|...+..-.++-.+.-.++..+..++..+.
T Consensus 134 W~~~n~~Le~-------~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 134 WLIHNEQLEA-------MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 005339 368 SLQMNMESIMRNRE 381 (701)
Q Consensus 368 ele~E~~rl~e~l~ 381 (701)
.+..+....++++.
T Consensus 207 ~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 207 QLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHhcccc
No 332
>PRK00736 hypothetical protein; Provisional
Probab=47.19 E-value=1.2e+02 Score=26.13 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
..++.+|..+++-+|+.+..+.+....-+..|..|+..|....+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666666666555566555555554443
No 333
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=46.71 E-value=5.2e+02 Score=29.94 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEE 404 (701)
Q Consensus 388 lqSLE~eLkslq~~le~ 404 (701)
+++|+.+|..+++-+..
T Consensus 157 l~~lrrdLavlRQ~~~~ 173 (426)
T smart00806 157 LKSLQRELAVLRQTHNS 173 (426)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666655555444
No 334
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=46.63 E-value=5.5e+02 Score=30.20 Aligned_cols=14 Identities=21% Similarity=0.518 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 005339 396 ASVERRAEEERAAH 409 (701)
Q Consensus 396 kslq~~le~E~~aH 409 (701)
+.++..++.|+..|
T Consensus 363 ~~i~~~v~~Er~~~ 376 (582)
T PF09731_consen 363 KEIKEKVEQERNGR 376 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555443
No 335
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.48 E-value=6.6e+02 Score=31.13 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=11.8
Q ss_pred ccccccccCccCcccccccccccc
Q 005339 125 EQSKDMSKHDADRVEIPETFTDLD 148 (701)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (701)
.|...+.++......+....+.+|
T Consensus 248 ~L~~~i~~~~~~l~~~~~~l~~lD 271 (771)
T TIGR01069 248 TLSEKVQEYLLELKFLFKEFDFLD 271 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444444
No 336
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=45.93 E-value=5.2e+02 Score=29.74 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
.+..+..||....++-+-+.+.+
T Consensus 350 HQkkiEdLQRqHqRELekLreEK 372 (593)
T KOG4807|consen 350 HQKKIEDLQRQHQRELEKLREEK 372 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777766655554444444
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=45.85 E-value=3.7e+02 Score=28.04 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.++=...|.--+..++..+..++..+..+.....++...+......
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~ 67 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ 67 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555555555555555555555554433
No 338
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.79 E-value=86 Score=29.37 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
..++.++..|.+++.+...++..|..|.+.|.+..+.+..++...
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999988887664
No 339
>PRK04325 hypothetical protein; Provisional
Probab=45.65 E-value=1.2e+02 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
.+..++.+|..+++-.|+.+..|.+....-+..|..|+..|....
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777666666666655555555555554443
No 340
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.56 E-value=6.9e+02 Score=31.03 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=12.0
Q ss_pred ccccccccCccCcccccccccccc
Q 005339 125 EQSKDMSKHDADRVEIPETFTDLD 148 (701)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (701)
.|...+.++......+....+.+|
T Consensus 253 ~l~~~i~~~~~~l~~~~~~l~~lD 276 (782)
T PRK00409 253 ELSAKVAKNLDFLKFLNKIFDELD 276 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444
No 341
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.68 E-value=1.3e+02 Score=30.29 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
....+.+++.....+++..+.|..+|..|.+.+...|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555555555555556666666777766665544
No 342
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.25 E-value=8.9e+02 Score=31.95 Aligned_cols=58 Identities=9% Similarity=-0.033 Sum_probs=31.2
Q ss_pred hhhhHhHhHhhhcchhHHHH-HHHHHHHHHHHHHHHHHhhchhhh---hhhhHHHHHhhccc
Q 005339 639 DSGAVRATRFLWRYPIARII-LLFYLVFVHLFLMYLLHRLQEQAD---NFAAREVAESMGLT 696 (701)
Q Consensus 639 Ds~sir~g~fLRRyP~aRl~-~l~Y~vlLHLWV~~VL~~~~~~~~---~~~~~~~~~~~~~~ 696 (701)
+.|+.--|++=+-=|+.++= -.+-.++-||-=||=+.+++.--. -+|++-..+.+|.+
T Consensus 1202 Etf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~ 1263 (1294)
T KOG0962|consen 1202 ETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRS 1263 (1294)
T ss_pred HHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhc
Confidence 56666677777777777653 233334445555555555444322 23555555555554
No 343
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.05 E-value=1.4e+02 Score=31.91 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (701)
+|..+|..|++++.+++..++++.-++++++++--++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777777766665554
No 344
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=43.99 E-value=3.8e+02 Score=27.55 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
.+.|+.+|..|+-+-......+..+.
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS 31 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLS 31 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666555444444444443
No 345
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=43.81 E-value=6.9e+02 Score=30.53 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeL 469 (701)
-.+++++.--+.++..|++|.+.-+.+..++...+
T Consensus 227 lqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 227 LQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 34556666666777888888888877776665544
No 346
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.71 E-value=2.6e+02 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+.+..|.+++..++.++..+...=+.+..|+++|+.+......+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44445555555555555554444444455555544444443333
No 347
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.49 E-value=2.1e+02 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr 525 (701)
++++++.|..+++|..-|+.=|.+.+.+++.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556667777777777777777777777777664
No 348
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.26 E-value=2.2e+02 Score=33.44 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHH----HHHHhHHHHHHhhhhHHHHHHHH
Q 005339 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVE----RARQGQRDAENKLSSLEAEVQKM 524 (701)
Q Consensus 449 ~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~----~lRq~qr~le~kL~slE~elqkL 524 (701)
.+|.+++.+-+.+.++-+-.|..+..+..++++.-..-...+++++.+..+|. ++--.++-++.+=-.+..+=+.|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHH
Q 005339 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (701)
Q Consensus 525 r~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L 557 (701)
+.++-.|..++..+ .+++.||..|.+.+
T Consensus 417 r~Kldtll~~ln~P-----nq~k~Rl~~L~e~~ 444 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAP-----NQLKARLDELYEIL 444 (508)
T ss_pred HHHHHHHHHHhcCh-----HHHHHHHHHHHHHH
No 349
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.78 E-value=3.9e+02 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
.+...+...-..+...+..+.++.+++.-.++.+..++.+.
T Consensus 145 ~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 145 RQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555777777777777777777777777654
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.72 E-value=6e+02 Score=31.52 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=3.1
Q ss_pred hhhcch
Q 005339 648 FLWRYP 653 (701)
Q Consensus 648 fLRRyP 653 (701)
||+++|
T Consensus 743 ~L~~~~ 748 (771)
T TIGR01069 743 LLKNHP 748 (771)
T ss_pred HhcCCc
Confidence 455555
No 351
>PF15294 Leu_zip: Leucine zipper
Probab=42.68 E-value=4.9e+02 Score=28.50 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMN 372 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E 372 (701)
.+..|+.+...+|.|+..++..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~ 154 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQ 154 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 352
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=42.41 E-value=46 Score=33.23 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHHHHhHHhhhhHhHhHhhh-------cchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005339 629 VQLQKAAKLLDSGAVRATRFLW-------RYPIARIILLFYLVFVHLFLMYLLHRL 677 (701)
Q Consensus 629 rrvk~Aa~~lDs~sir~g~fLR-------RyP~aRl~~l~Y~vlLHLWV~~VL~~~ 677 (701)
.-+--++..+-++++.+|||+| .+|..=+--++..+--|.|.|+++++.
T Consensus 107 ~~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l~~~i~~~l~~~~~~fv~~~~~ 162 (168)
T PF07099_consen 107 WLFIILISFLSSFGIYLGRFLRLNSWDILTNPQSLIRDILSSLSPHAWLFVLLFTF 162 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456677888999999999999 457766666677777778888887754
No 353
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.40 E-value=4.5e+02 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q 005339 499 EVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (701)
Q Consensus 499 EL~~lRq~qr~le~kL~slE~elqkLr~e~ 528 (701)
++..++....+.+.+|..++.+..+|.+.+
T Consensus 222 e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 222 EVKEIKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555554
No 354
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=42.34 E-value=5.2e+02 Score=28.70 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=27.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 277 ~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
+..-|.+-..+..+....++.--.-+......|-.+.+.+..+|+..|..+.+.+..+.++
T Consensus 246 ~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~r 306 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSR 306 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3444555444444444444431111111233333455555556666665555555444433
No 355
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.33 E-value=4.2e+02 Score=29.75 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el 359 (701)
+|......+.+.+..|+.....+......+......+|.+|-. +|.--|..|+.-|.+|+..|..+...-
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~----------KF~~vLNeKK~KIR~lq~~L~~~~~~~ 210 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA----------KFVLVLNEKKAKIRELQRLLASAKEEE 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 3333333344444444443333333333334444455555433 577777788888888877666665443
Q ss_pred H
Q 005339 360 A 360 (701)
Q Consensus 360 ~ 360 (701)
.
T Consensus 211 ~ 211 (342)
T PF06632_consen 211 K 211 (342)
T ss_dssp H
T ss_pred c
Confidence 3
No 356
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.18 E-value=2.6e+02 Score=25.24 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
..+++.|...+..|.+++.....+..+++.-+.-+..++
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455444444444444444433333
No 357
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.14 E-value=1.1e+02 Score=29.01 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
..++.++..|..++.+...++..|..|.+.|++.-+.+..+++..
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999988888887764
No 358
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.93 E-value=2.8e+02 Score=25.53 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
.++.++.++.++..++.....+..++.+++..+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444333
No 359
>PRK00846 hypothetical protein; Provisional
Probab=41.43 E-value=2.3e+02 Score=25.22 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 005339 288 YKSENAQLEE 297 (701)
Q Consensus 288 lksr~aqLEe 297 (701)
+..|+..||.
T Consensus 11 le~Ri~~LE~ 20 (77)
T PRK00846 11 LEARLVELET 20 (77)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 360
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=41.19 E-value=4.3e+02 Score=27.42 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 288 lksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rle 367 (701)
+.+-+..||.+..-++.+-..|...+..++.-..+.=.++...+.....-.+..++--.-|+.++..|.+.+...+....
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~ 158 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQK 158 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888777777777777777766666666555555555555544455666666677777777777777777777
Q ss_pred HHHHHHHHHHHHhhh
Q 005339 368 SLQMNMESIMRNREL 382 (701)
Q Consensus 368 ele~E~~rl~e~l~~ 382 (701)
.++.+..++...+.+
T Consensus 159 ~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 159 KLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666655544444
No 361
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=41.17 E-value=4.3e+02 Score=27.44 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 253 Lee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
+.++|+.|+...- ....++--|+.|-+-+.++++.|+.|.+....-.. |+++=.-+-.--.
T Consensus 43 m~evNrrlQ~hl~------------------EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta 103 (195)
T PF10226_consen 43 MKEVNRRLQQHLN------------------EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTA 103 (195)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 333 ~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
...-. ++..-.++++.+..+.+++..++.-|++
T Consensus 104 ~vmr~-------------eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 104 SVMRQ-------------EVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 362
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.14 E-value=45 Score=30.93 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 301 el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
+.+..+..++..+..++.+|..+-..++..-+.|... -.-+...++.++..|+.++......++.++.++..|+.-+
T Consensus 5 ~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~---ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 5 EERERREEAEQEKEQIESELEELTASLFEEANKMVAD---ARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777666655522 3334555666666666666666666666666665555544
Q ss_pred hh
Q 005339 381 EL 382 (701)
Q Consensus 381 ~~ 382 (701)
..
T Consensus 82 ~~ 83 (100)
T PF06428_consen 82 ES 83 (100)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 363
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.70 E-value=88 Score=35.11 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+.+++.++..++..+..+...+...+..+..+.+++.+
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444333333333333333333333333333
No 364
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.62 E-value=3.4e+02 Score=31.79 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
+.+..|-.+++.++.++..+..++++++.+-+.+.++
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999888776655444
No 365
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=40.53 E-value=60 Score=27.39 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHhHHhhhhHhHh-HhhhcchhHHHHHHHHHHHHHHHHH
Q 005339 625 AGASVQLQKAAKLLDSGAVRAT-RFLWRYPIARIILLFYLVFVHLFLM 671 (701)
Q Consensus 625 ~~~~rrvk~Aa~~lDs~sir~g-~fLRRyP~aRl~~l~Y~vlLHLWV~ 671 (701)
.+++++.|-.+-..=.+++-+. .|+..+|.+|+++++.+++...|++
T Consensus 22 r~i~~k~K~~a~~~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 22 RGIPRKAKIRALLMMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 3566777777777777777777 6777777999999999988877765
No 366
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.52 E-value=1.9e+02 Score=34.61 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (701)
.++-+.+.+|+..+.+||..+..|..+...-+++++.+..
T Consensus 110 ~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 110 EEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566688889999999999999999999988888887654
No 367
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.37 E-value=4.1e+02 Score=29.12 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH
Q 005339 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488 (701)
Q Consensus 409 H~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~ 488 (701)
|+...+.+..|=.+|-+....|--++.+++..++.-++.....-.-...|+..++.-+.+++.....+..++.--+.=..
T Consensus 89 ~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 89 HKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 005339 489 QAIQMQAWQDEVERA 503 (701)
Q Consensus 489 q~~qLk~lkeEL~~l 503 (701)
..+..++||+++
T Consensus 169 ---EyE~~EeeLqkl 180 (338)
T KOG3647|consen 169 ---EYEDCEEELQKL 180 (338)
T ss_pred ---HHHHHHHHHHHH
No 368
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=40.22 E-value=1.6e+02 Score=31.93 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 275 a~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
+...-||+-+....+.+.+.||. +.++.++.+.+..+...|..+|...++.+.+....+.++
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdr-isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDR-ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455789999999999999998 578888888888899999999999998888888877655
No 369
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.76 E-value=7.3e+02 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=14.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 376 IMRNRELTETRMIQALREELASVERRAEE 404 (701)
Q Consensus 376 l~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (701)
+++.+=.+-.+.-..+=.+|..|+.++..
T Consensus 212 ~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~ 240 (570)
T COG4477 212 IMERIPSLLAELQTELPGQLQDLKAGYRD 240 (570)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 33333333333233344556667766655
No 370
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.70 E-value=2.4e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 551 RELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 551 ~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
+.|.-.+.+....+..+......+.++++.+.
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555556666666654
No 371
>smart00338 BRLZ basic region leucin zipper.
Probab=39.50 E-value=1.2e+02 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
+...+.+|+.++..|..+...+...++.+..++..+...+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677788888888888888888888888888887776654
No 372
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=39.44 E-value=71 Score=33.61 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005339 562 TQLETMASEKAAAEFQLEKE 581 (701)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~ 581 (701)
..-|.|..|.-.|..+|-.-
T Consensus 163 ~~QE~L~~em~~La~~LK~~ 182 (251)
T PF09753_consen 163 NLQEDLTEEMLSLARQLKEN 182 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44457888888888887663
No 373
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.42 E-value=4.3e+02 Score=26.94 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
+.+.-.+++....-..|...+.-+-.++..++.+|..-+..+....
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555556666655555555444
No 374
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=39.40 E-value=5.4e+02 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhh-hhhcchHHHHHHHHHhhhhHHHHHHH
Q 005339 251 DQLDEAQGLLKTT-ISTGQSKEARLARVCAGLSSRLQEYK 289 (701)
Q Consensus 251 kQLee~n~~LrsE-~e~l~~ke~qLa~~~~RLrk~~~elk 289 (701)
+++++.+.+|.-- .+++..-++||.-+..|++--..++.
T Consensus 30 k~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~ 69 (268)
T PF11802_consen 30 KDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELE 69 (268)
T ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 4666677777444 36666667777766666665444443
No 375
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.79 E-value=23 Score=32.02 Aligned_cols=19 Identities=5% Similarity=0.063 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005339 656 RIILLFYLVFVHLFLMYLL 674 (701)
Q Consensus 656 Rl~~l~Y~vlLHLWV~~VL 674 (701)
=++||+.++.||+|-=|..
T Consensus 67 SvgFIasV~~LHi~gK~~~ 85 (88)
T KOG3457|consen 67 SVGFIASVFALHIWGKLTR 85 (88)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3678899999999965543
No 376
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.71 E-value=1.1e+02 Score=28.37 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~ 476 (701)
+++.+.|+=...++.-++++++.++.+-+++..+|..+...+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555556667777777777777777777777776654
No 377
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.56 E-value=8.2e+02 Score=29.92 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 005339 307 RSYEARIKQLEQELSV 322 (701)
Q Consensus 307 ~~Le~rl~~LQaeL~~ 322 (701)
-.++.|++.|+.+-..
T Consensus 107 ~~yQerLaRLe~dkes 122 (861)
T KOG1899|consen 107 PEYQERLARLEMDKES 122 (861)
T ss_pred hHHHHHHHHHhcchhh
Confidence 4455566666555433
No 378
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.51 E-value=1.3e+02 Score=35.81 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHH
Q 005339 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (701)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~e 384 (701)
+...++-+|+.+++.|+.++.....++++++....+.+.++..+.
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344556678888888888888888888888877766555544433
No 379
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=3.7e+02 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
++.-..+|..+...++-++..+....+.++...+.++..+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444444444444444444333
No 380
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.25 E-value=8.8e+02 Score=30.15 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.8
Q ss_pred hhhcch
Q 005339 648 FLWRYP 653 (701)
Q Consensus 648 fLRRyP 653 (701)
||++||
T Consensus 754 ~L~~~~ 759 (782)
T PRK00409 754 FLKKHP 759 (782)
T ss_pred HHcCCC
Confidence 444444
No 381
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.14 E-value=2.6e+02 Score=29.48 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQ------ELSVYKSEVTKVE------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 309 Le~rl~~LQa------eL~~EQ~~l~q~e------s~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
+-.++..+++ +-...+.-...-. ....+.+.+.+++.+.....+..++.+...++...+++..|-+++
T Consensus 119 ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 119 LLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Q ss_pred HHHhhhHHHHH
Q 005339 377 MRNRELTETRM 387 (701)
Q Consensus 377 ~e~l~~~ekei 387 (701)
.++.+.+.+++
T Consensus 199 lee~~~Lq~~i 209 (216)
T KOG1962|consen 199 LEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHH
No 382
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.12 E-value=1.1e+02 Score=34.49 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 513 kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
+...+-.+..+||.+.+-|+.-. .+.......|+++|.+|.+-|..+++|..+|.|+-..+..+...-+
T Consensus 16 kyqklaqeysklraqakvlke~v--------iee~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfq 84 (637)
T KOG4421|consen 16 KYQKLAQEYSKLRAQAKVLKEAV--------IEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQ 84 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhc
Confidence 33445667777888777666432 5556678899999999999999999999999999888888876655
No 383
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.01 E-value=4.8e+02 Score=27.09 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005339 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (701)
Q Consensus 285 ~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~ 364 (701)
-..|..+++.+|.++.... ++...|+++|..-+..... +..+......+...|..+...++..|..+..
T Consensus 107 R~~LeAQka~~eR~ia~~~-------~ra~~LqaDl~~~~~Q~~~----va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESE-------ARANRLQADLQIARQQQQQ----VAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666544443 3555666666554432222 2333333444455555555555554444444
Q ss_pred HHHHHHH
Q 005339 365 NLASLQM 371 (701)
Q Consensus 365 rleele~ 371 (701)
.+..++.
T Consensus 176 qv~~Lq~ 182 (192)
T PF11180_consen 176 QVRQLQR 182 (192)
T ss_pred HHHHHHH
Confidence 4444443
No 384
>PRK00846 hypothetical protein; Provisional
Probab=37.78 E-value=2.7e+02 Score=24.78 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
+..++.++..+++-.|+.+..+.+.....+..+..|+..|....+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555555555555555444443
No 385
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.75 E-value=3.6e+02 Score=25.52 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
-+..++..++.....++.++.+++..++.+
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 386
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.33 E-value=2.6e+02 Score=31.96 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 307 ~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
-.|-.+...+..++...|.++......+......+++..+.|..+...+..+++.++..+.+++++...+.-.+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444556666677776766777766665422222211455655666666666666666666666655555444
No 387
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=37.28 E-value=38 Score=35.01 Aligned_cols=29 Identities=14% Similarity=0.462 Sum_probs=27.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 005339 648 FLWRYPIARIILLFYLVFVHLFLMYLLHR 676 (701)
Q Consensus 648 fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~ 676 (701)
|++.|..+=+++++.++.+|.|-|++++.
T Consensus 164 f~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 164 FFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999984
No 388
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=37.06 E-value=3.5e+02 Score=26.13 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (701)
.+...+-|=.+++.+|..+|.|.+.+..-..++-++ +..||+.|+.
T Consensus 19 dR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rr-IkMLE~aLkq 64 (134)
T PF08232_consen 19 DRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRR-IKMLEYALKQ 64 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444444555566666666665544444444444 4444444433
No 389
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.74 E-value=1.2e+02 Score=28.76 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
-..++.+|..|-.++-..-+++.++..|.++|++..+.+..|+..
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 367888999999999999999999999999999999998877654
No 390
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.33 E-value=2.8e+02 Score=31.18 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 323 YKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 323 EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (701)
+|+++++.++++.+-...+..+++.|+.++..++..+.-++.+.+++++..+.
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34555556666666666677778888888888888888888888886666555
No 391
>PRK04406 hypothetical protein; Provisional
Probab=35.87 E-value=3.1e+02 Score=24.15 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 287 elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
.+..|+..||..+.-+.+....|..-+...+.++...+..+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444444444444444333333
No 392
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=35.83 E-value=12 Score=43.46 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 333 ~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (701)
++..+..-|+.+|..+..||...++|+.+...+...+-+.+++
T Consensus 423 RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqr 465 (495)
T PF12004_consen 423 RLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQR 465 (495)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchH
Confidence 3444444466777777778888887777777665555544444
No 393
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.56 E-value=4.5e+02 Score=26.03 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (701)
Q Consensus 336 eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (701)
+.+..++.++..|......--.-+...|.++..+..+...+...+...... +..++.+|..++..
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~-~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE-LAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334445666667776666666677777777777777777777777776666 55555555555443
No 394
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.82 E-value=2.7e+02 Score=28.52 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--TETRMIQALREELASVERR 401 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~--~ekeilqSLE~eLkslq~~ 401 (701)
++.+.|-+.+..++.++..++...+-++.|++.|.-.++. ..++ +++|.++-+....+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~-i~~L~kev~~~~er 138 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEE-IQELKKEVAGYRER 138 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666665555 2444 45555444333333
No 395
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=34.40 E-value=5.9e+02 Score=27.04 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCCCccccccchhhhhchhhHHhhhhcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005339 215 VNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQ 294 (701)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aq 294 (701)
|++.+++-..+++. =.+.+.+.||=. ..-||++-....+....+...+ .+....|+..++.+......
T Consensus 19 V~~~NvLS~~El~~--------~~~L~~~GkiLe-g~~Ld~aL~~~~~~~~~~~~~~---e~~le~Le~el~~l~~~~~~ 86 (256)
T PF14932_consen 19 VNESNVLSEEELQA--------FEELQKSGKILE-GEALDEALKTISAFSPKLLELE---EEDLEALEEELEALQEYKEL 86 (256)
T ss_pred CChhccCCHHHHHH--------HHHHHHcCCcCC-HHHHHHHHHHcccccCCccccc---hHHHHHHHHHHHHHHHHHHH
Confidence 44555555554432 122334444322 2356666666666643221111 12233444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (701)
Q Consensus 295 LEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el 359 (701)
.+.++..++.....+...+..|+..+...+..+......+...+.+.+.++..+.+.+..+-.++
T Consensus 87 ~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~ 151 (256)
T PF14932_consen 87 YEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASEL 151 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555666666666555555555555555555555555555555555444443
No 396
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.39 E-value=4.1e+02 Score=29.32 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 294 qLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
+||..-..+.+....+...+..|+.++.+.+..+...++++. ..|..+..-+-.+...+++++.+.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els--------------~~L~~l~~~~~~~s~~~~k~esei 184 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS--------------RALASLKNTLVQLSRNIEKLESEI 184 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444444555555555555554444444444222 333333333334455555555555
Q ss_pred HHHHHH
Q 005339 374 ESIMRN 379 (701)
Q Consensus 374 ~rl~e~ 379 (701)
..++..
T Consensus 185 ~~Ik~l 190 (300)
T KOG2629|consen 185 NTIKQL 190 (300)
T ss_pred HHHHHH
Confidence 555433
No 397
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=33.99 E-value=1e+03 Score=29.81 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l 327 (701)
.+++-.+-+..-+--=+..+++|+.|.....-||++.+..+..+-..-|. +.+++...-+.+...+|.+..+-.++-
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEa---eek~rre~ee~k~~k~e~e~kRK~eEe 969 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREA---EEKRRREEEEKKRAKAEMETKRKAEEE 969 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-HHHHHHHH
Q 005339 328 TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-TETRMIQA 390 (701)
Q Consensus 328 ~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-~ekeilqS 390 (701)
.+... .=.++.-.++-+.+..+...+++...+.-=++++.+ ++-++-++
T Consensus 970 qr~~q--------------ee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~RlA~s 1019 (1259)
T KOG0163|consen 970 QRKAQ--------------EEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDHELALRLANS 1019 (1259)
T ss_pred HHHhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
No 398
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=33.65 E-value=2.6e+02 Score=23.62 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-IETLVSSIDALKKQAALSEGNLASLQ 370 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~e-ie~Le~rl~~Le~el~~~K~rleele 370 (701)
++..|+..|..|..-+.=.+. +...+++.+.. ....+..+..+...+..++..|++++
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~-m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAEN-MLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677666654444443 44343333333 45555555555555555555555444
No 399
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.63 E-value=3.7e+02 Score=24.46 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
...-+..|..++..++.++..+...+..++.++..++.++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555544444
No 400
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.53 E-value=3.3e+02 Score=23.78 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=10.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhh
Q 005339 512 NKLSSLEAEVQKMRVEMAAMK 532 (701)
Q Consensus 512 ~kL~slE~elqkLr~e~~~Lk 532 (701)
..|...++.|..|+.+-..|.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 344455556666666544433
No 401
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=5.9e+02 Score=30.57 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (701)
Q Consensus 270 ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le 349 (701)
|+.||+++ +-+++.-..++.+...|++-..+-.++-..|.+++..|-.---.+.-.+...+.+|...+--...+...|.
T Consensus 597 k~~QlQ~l-~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~ 675 (741)
T KOG4460|consen 597 KKKQLQDL-SYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLG 675 (741)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eL 395 (701)
..+..+.......+.-++..++....=...+.+.+-+-+++.=.+|
T Consensus 676 ~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L 721 (741)
T KOG4460|consen 676 NAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKEL 721 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH
No 402
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=8.3e+02 Score=28.39 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (701)
Q Consensus 416 a~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLk 466 (701)
+..-...|.+.....-.+-.++++.++..+..+..+.--+..+.++...++
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 333444555555444555566677777666666665555555555555553
No 403
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=32.96 E-value=8.4e+02 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005339 560 KQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAER 594 (701)
Q Consensus 560 KQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~ 594 (701)
+-...+.|.-|+.=-+-.+..+.+.++.++.++.|
T Consensus 349 ~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 349 SLSLFEDLRLQSEIAKARWESALQTLQQGKLQALR 383 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888877788888888888888887753
No 404
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.79 E-value=7e+02 Score=28.00 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (701)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (701)
|......|..+...+..+++++...+..+-..+-.+--..|+++...|+.++..+..
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444455566667777777777777766666666666677777777777776643
No 405
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=32.77 E-value=2.6e+02 Score=23.79 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (701)
.+.++.++..|+.+|..|..-+.-.+. +.......... +.+..++.++.....+++.+..++.+++
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaen-m~~~~~~~~~~-----~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAEN-LLRLYSDEKKK-----KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888776665555 33343333321 3455555666666666666666555543
No 406
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.49 E-value=4.7e+02 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005339 311 ARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~e 331 (701)
.|+..+-.++...++.....+
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~ 138 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALK 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554444443
No 407
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.29 E-value=7.9e+02 Score=27.83 Aligned_cols=49 Identities=29% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 430 LseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
+...+.+--..++....-...|+.++..|-++++.+-|-=.++...+.+
T Consensus 185 yQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~ 233 (401)
T PF06785_consen 185 YQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPS 233 (401)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 3444444445555555666778888888888887775544344443333
No 408
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.11 E-value=1e+03 Score=28.98 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 373 MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423 (701)
Q Consensus 373 ~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eL 423 (701)
++...+.+....-++...+...++.....++.....|+.+.......+.-.
T Consensus 52 ~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~ 102 (611)
T KOG2398|consen 52 MRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQD 102 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444444455555555566566666666666655554443333
No 409
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.79 E-value=8.2e+02 Score=27.89 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=15.3
Q ss_pred CCcchhhhhhhhccccccccc
Q 005339 87 KDTATLAVEKETITTGKTQKN 107 (701)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (701)
.+...+..|.+.|.|..+.+-
T Consensus 77 ~~~~~~~~q~~il~S~~vl~~ 97 (458)
T COG3206 77 NDSSSLETEIEILQSRSVLEK 97 (458)
T ss_pred CCchhHHHHHHHHhhHHHHHH
Confidence 455667778888888888753
No 410
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.73 E-value=1.2e+03 Score=29.93 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 005339 549 RYRELTDLLYYKQTQLETM----ASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L----~~Er~sL~~qLE~~~~~~~ 586 (701)
.|++|+..+...-..++.+ .+.++-|.-.|+.+.-+..
T Consensus 871 el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In 912 (1072)
T KOG0979|consen 871 ELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQIN 912 (1072)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444334333 3345556666666554443
No 411
>PLN02678 seryl-tRNA synthetase
Probab=31.49 E-value=3.4e+02 Score=31.49 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
|..+...++.++...+..+.+....+... .......+.|..+...+..++..+...+.+++.++..++-.+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566666666666666666655431 222334455555666666666666666666666666555544
No 412
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.37 E-value=3e+02 Score=23.19 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNREL-------------TETRMIQALREELASVERRA 402 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~-------------~ekeilqSLE~eLkslq~~l 402 (701)
+.++.++...+++++.++.++...++. .++..+..++.++..++..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665 24444555555555554444
No 413
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.33 E-value=4.2e+02 Score=27.58 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 005339 461 ECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 461 ElkqLkQeLq~lE~e~~r~q 480 (701)
|.-.|+.+|.+++..+.+.+
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665554
No 414
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=31.33 E-value=16 Score=42.53 Aligned_cols=81 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-H---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005339 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAERE-L---SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (701)
Q Consensus 271 e~qLa~~~~RLrk~~~elksr~aqLEell~el~e-k---~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie 346 (701)
|.+|..-.....|-+.+++.+...=|+-|+.+++ + .+.+..|++..|.||.+++. ++...+..|.-.|+
T Consensus 396 ErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~-------~m~~~~~~kqrii~ 468 (495)
T PF12004_consen 396 ERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHA-------EMQAVLDHKQRIID 468 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHH-------HHhcccccchHHHH
Confidence 4455555555666777777777777766666555 2 56666699999999988775 34445555666666
Q ss_pred HHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQ 358 (701)
Q Consensus 347 ~Le~rl~~Le~e 358 (701)
.=+.+|.+|+.-
T Consensus 469 aQ~~~i~~Ldaa 480 (495)
T PF12004_consen 469 AQEKRIAALDAA 480 (495)
T ss_dssp ------------
T ss_pred Hhhhhccccccc
Confidence 555555555443
No 415
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.13 E-value=91 Score=28.94 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (701)
Q Consensus 320 L~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (701)
|..++..+...+. .....+.++++|-..| ..++..+...+..-..++..+..+...+.+.... +.+++..|+.|
T Consensus 3 l~~e~~~r~~ae~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~-l~~lq~qL~~L 77 (100)
T PF06428_consen 3 LEEERERREEAEQ----EKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL-LESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC-CCHCTSSSSHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4444544555444 3334778888888888 8888888888877777777788887777776555 56666555554
Q ss_pred HH
Q 005339 399 ER 400 (701)
Q Consensus 399 q~ 400 (701)
+.
T Consensus 78 K~ 79 (100)
T PF06428_consen 78 KT 79 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 416
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=31.07 E-value=7.3e+02 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (701)
..++..+...+..+...++..+.++.+++.+++-.....
T Consensus 204 ~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 204 HEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334555555556666666666666666666665555543
No 417
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=30.50 E-value=8.4e+02 Score=27.59 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHH
Q 005339 303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN---MESIMRN 379 (701)
Q Consensus 303 ~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E---~~rl~e~ 379 (701)
-.....++.++..++.++...-.............+......|.+|-.++..........+.-+.++-.+ ++.++.+
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrN 103 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRN 103 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666665544443322222222333333444444444444444444444444444333 3334444
Q ss_pred hhh
Q 005339 380 REL 382 (701)
Q Consensus 380 l~~ 382 (701)
++.
T Consensus 104 LT~ 106 (383)
T PF04100_consen 104 LTQ 106 (383)
T ss_pred HHH
Confidence 444
No 418
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.34 E-value=3.2e+02 Score=23.06 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
.|...|..|..++.+.+..+..+..+..+..-.-.|++.|+|..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666677777777777777777777763
No 419
>PLN02678 seryl-tRNA synthetase
Probab=30.33 E-value=3.5e+02 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=12.1
Q ss_pred HHHHHHHhHHhhh---hHhHhHhh
Q 005339 629 VQLQKAAKLLDSG---AVRATRFL 649 (701)
Q Consensus 629 rrvk~Aa~~lDs~---sir~g~fL 649 (701)
..+...++.+|-- -+.+|+|.
T Consensus 144 ~~Lg~~l~l~d~~~~~~vsG~~~y 167 (448)
T PLN02678 144 VDLVELLGIVDTERGADVAGGRGY 167 (448)
T ss_pred HHHHhhccCccchhhhhhcCceeE
Confidence 4667777777632 34455554
No 420
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=30.20 E-value=4.2e+02 Score=24.04 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005339 312 RIKQLEQEL 320 (701)
Q Consensus 312 rl~~LQaeL 320 (701)
++..|..+.
T Consensus 32 k~~rl~~Ek 40 (96)
T PF08647_consen 32 KKLRLEAEK 40 (96)
T ss_pred HHHHHHHHH
Confidence 333333333
No 421
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=30.12 E-value=9.6e+02 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhh
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKR 533 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~ 533 (701)
++.++...+.+..++.++|..||+
T Consensus 446 a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 446 AQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888999999887775
No 422
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=30.11 E-value=54 Score=29.24 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 005339 652 YPIARIILLFYLVFVHLFLMYLLH 675 (701)
Q Consensus 652 yP~aRl~~l~Y~vlLHLWV~~VL~ 675 (701)
+...|++.+.|+..+|+|.++.=.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~ 44 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPS 44 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCcc
Confidence 456899999999999999886533
No 423
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.96 E-value=3.7e+02 Score=30.77 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.|-.+..+++.++...|..+......+.... ......+.|..+...+.++++.++..+.+++++...+.-.+
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556666666666666666666555321 11123344555555566666666666666666655554443
No 424
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.83 E-value=5.9e+02 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (701)
..+|+++-..+++.....+.+++++..--+.....+++.-++ +..+...|+.+
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~ 58 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 334444555555555555555554444433333333333333 33333334444
No 425
>PLN02320 seryl-tRNA synthetase
Probab=29.46 E-value=3.4e+02 Score=32.02 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
+...++.++...+..+......+.. .......+.|..+...+.+++..++..+.++++++..+.-.+
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555555555555554443 122233445555555555555555555555555555544443
No 426
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.39 E-value=2.3e+02 Score=35.91 Aligned_cols=65 Identities=23% Similarity=0.392 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDA-ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA 568 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~l-e~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~ 568 (701)
++.+.+|++++|.++..+ ..++..+++.++++.+-|+++ ...+|.||+.+-+.--+.|++++.+-
T Consensus 366 irElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei-----------~~twEEkl~ktE~in~erq~~L~~~g 431 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEI-----------TVTWEEKLRKTEEINQERQAQLESMG 431 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788887776553 233444455444444444332 25567777777666666666666554
No 427
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.29 E-value=2.2e+02 Score=22.71 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005339 316 LEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 316 LQaeL~~EQ~~l~q~es~~~ 335 (701)
||.+....+..+..+.+++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~ 22 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYD 22 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 428
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.00 E-value=3.1e+02 Score=27.73 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 285 ~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
.+.+..++..|+..+..++.+...|+.++..|+..+...++.|..+-.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666676676666666666655
No 429
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.77 E-value=4.2e+02 Score=23.61 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005339 393 EELASVE 399 (701)
Q Consensus 393 ~eLkslq 399 (701)
.+|..|+
T Consensus 64 eEI~rLr 70 (79)
T PF08581_consen 64 EEIARLR 70 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 430
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.62 E-value=2.2e+02 Score=33.33 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (701)
+..+.+++.+++.+..+++.+.....+.+.+ +..|+.+++.|+..
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~K-IkeLEaE~~~Lk~Q 119 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRR-IEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333 44444444444444
No 431
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.43 E-value=1.1e+03 Score=28.37 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
.+.+..+..++..++--+..-+....+++.++..+.....+
T Consensus 372 as~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 372 ASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 33344444555555555555555555555555555544444
No 432
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.40 E-value=4.6e+02 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 005339 279 AGLSSRLQEYKSENAQLEELLVA 301 (701)
Q Consensus 279 ~RLrk~~~elksr~aqLEell~e 301 (701)
.+|+...+.+....+.|+..+++
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554433
No 433
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=28.28 E-value=6.7e+02 Score=25.78 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (701)
..+.|-.-|+.++.-++..+..++.+...+.+.-..+
T Consensus 68 aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l 104 (178)
T PF14073_consen 68 AAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSL 104 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344555556666666666666666666665554443
No 434
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=28.20 E-value=9.6e+02 Score=27.57 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQ 561 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ 561 (701)
..+++++++.|+..|++.+
T Consensus 264 ~m~l~k~~nslkp~l~~lr 282 (464)
T KOG4637|consen 264 LMELDKAMNSLKPDLIQLR 282 (464)
T ss_pred HHHHHHHHhhcCchHHHHH
Confidence 4678899999999888876
No 435
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=28.10 E-value=8.9e+02 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 005339 455 VAMLEVECATLQQELQDMEARLK 477 (701)
Q Consensus 455 ls~LE~ElkqLkQeLq~lE~e~~ 477 (701)
+..++..+.+++.++..++..+.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555556655555553
No 436
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.87 E-value=3.5e+02 Score=22.38 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
+...+..|+.++..|..+...++..+..+..++..|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777888888888888877777777777777666543
No 437
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.58 E-value=4.2e+02 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=12.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 359 AALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
++.++..+.+++.++..+...++..+..
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 438
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.27 E-value=4e+02 Score=27.16 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e 378 (701)
..++..++.++.+...++.++++...
T Consensus 140 e~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 140 EEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665544
No 439
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.19 E-value=3.6e+02 Score=22.78 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
..++.|..++..|..++..++..+..+.+|..|+-+++.
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555444444443
No 440
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.18 E-value=6.1e+02 Score=28.42 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005339 658 ILLFYLVFVHLFLMYLLHR 676 (701)
Q Consensus 658 ~~l~Y~vlLHLWV~~VL~~ 676 (701)
|++-+++++|+|=+|+=++
T Consensus 264 fLlPfLf~~~~~q~yn~~~ 282 (330)
T PF07851_consen 264 FLLPFLFFGQFFQLYNAYT 282 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556677776655443
No 441
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=27.13 E-value=77 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHH--HHHhhchhh
Q 005339 660 LFYLVFVHLFLMY--LLHRLQEQA 681 (701)
Q Consensus 660 l~Y~vlLHLWV~~--VL~~~~~~~ 681 (701)
|++++..-+|.+| |||+.+|.+
T Consensus 20 Fl~~~~~F~~F~~Kqilfr~~~~s 43 (54)
T PF06716_consen 20 FLFCLVVFIWFVYKQILFRNNPQS 43 (54)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCc
Confidence 3333344455554 788877754
No 442
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=27.11 E-value=4.8e+02 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 313 IKQLEQELSVYKSEVTK 329 (701)
Q Consensus 313 l~~LQaeL~~EQ~~l~q 329 (701)
+..|.+++...++.+.+
T Consensus 10 ~~~l~~~v~~lRed~r~ 26 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRR 26 (112)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 443
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.00 E-value=4.5e+02 Score=23.30 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.-+|++|......|.++........+.++.++.++++++..-..+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666677777777777777777776666655554
No 444
>PF14282 FlxA: FlxA-like protein
Probab=26.94 E-value=4e+02 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 558 YYKQTQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
.+|+.+++.|..++..|..||..+...
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655433
No 445
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.39 E-value=4.4e+02 Score=30.53 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
|..+...+..++...|..++.....+..+...+.+....|..++..+..+++.++..+.+++.++..+.-.+-.
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC
Confidence 33445555555555565566666656544444444456677777777777777777777777777776665543
No 446
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=6.6e+02 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (701)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (701)
+..++.+++++......+++.+..+..+ +..++.++..++++
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~-~~~l~~~~q~~~q~ 137 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQR-IEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 44444444444443
No 447
>PRK10869 recombination and repair protein; Provisional
Probab=25.94 E-value=1.2e+03 Score=27.76 Aligned_cols=36 Identities=6% Similarity=0.005 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
..|+.++..+.+++..+- +.|..-|..-..+|+...
T Consensus 344 ~~Le~e~~~l~~~l~~~A---~~LS~~R~~aA~~l~~~v 379 (553)
T PRK10869 344 ETLALAVEKHHQQALETA---QKLHQSRQRYAKELAQLI 379 (553)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455556666666665442 445555555555555544
No 448
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.85 E-value=2.2e+02 Score=31.29 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQ 561 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ 561 (701)
.++++-|+.|++-+.++.
T Consensus 272 ~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 272 SELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566665555544
No 449
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.79 E-value=4.4e+02 Score=22.82 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
....|..+-..++..+..++.|..++.++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 450
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.59 E-value=7.3e+02 Score=25.30 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 005339 352 IDALKKQAALSEGNLASLQMNME 374 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~ 374 (701)
+..++.++...+.++++++....
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 451
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.51 E-value=4.1e+02 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhh
Q 005339 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL 281 (701)
Q Consensus 247 ~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RL 281 (701)
..+...++.++..+++....+.++++||.++..-.
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666777777777777777777777776665544
No 452
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.43 E-value=5.9e+02 Score=24.85 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~r 375 (701)
.++++.+......++.++.+.++
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 453
>PRK04325 hypothetical protein; Provisional
Probab=25.27 E-value=4.2e+02 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (701)
|.+|+.++.+.+.-+..+-.-+.+-+.++++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~ 41 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDL 41 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333
No 454
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=2.4e+02 Score=27.07 Aligned_cols=53 Identities=21% Similarity=0.433 Sum_probs=38.2
Q ss_pred chhhhHHHHHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005339 624 IAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRL 677 (701)
Q Consensus 624 ~~~~~rrvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~VL~~~ 677 (701)
+...+.++...++.+-..+.++-+-+| +--.++.+++-+|++=|.+++|++.|
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk~w-Wkn~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRKMW-WKNCKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777777888888888888887 77777777777777766666666654
No 455
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.04 E-value=6.5e+02 Score=25.38 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=6.8
Q ss_pred ccccchhhhhchhhHHhh
Q 005339 222 KDADVKVETLSNKRKQQA 239 (701)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ 239 (701)
+..|++..-+-.++.-..
T Consensus 45 ~~~~l~~~l~~~q~~ak~ 62 (184)
T PF05791_consen 45 KLSDLQKDLVQHQKTAKE 62 (184)
T ss_dssp T-TTHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 344444433333433333
No 456
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.03 E-value=5.5e+02 Score=23.67 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005339 385 TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (701)
Q Consensus 385 keilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~Elkq 464 (701)
++-+--.+..|..-+.........-..-......+...|+.....+-.-+.....+...+..++..-.+.......++..
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcccCChH
Q 005339 465 LQQELQDMEARLKRGQKKSPE 485 (701)
Q Consensus 465 LkQeLq~lE~e~~r~qek~~~ 485 (701)
++.+|..+.....++.+.+..
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 457
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.97 E-value=1.8e+02 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le 349 (701)
.++..|+.-|..+++.+....+....+++....+...|.
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr 42 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLR 42 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 356667777777776555555544444333333333333
No 458
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.90 E-value=9.2e+02 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 307 RSYEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 307 ~~Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
..++..+.++++++...+..+...
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444433
No 459
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.89 E-value=5.6e+02 Score=24.99 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005339 292 NAQLEE 297 (701)
Q Consensus 292 ~aqLEe 297 (701)
.++||.
T Consensus 29 ~~~LE~ 34 (160)
T PF13094_consen 29 KRALER 34 (160)
T ss_pred HHHHHH
Confidence 333443
No 460
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.82 E-value=1.1e+03 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=7.3
Q ss_pred cCCCCCCCCCcccc
Q 005339 166 LNHPPSPLPPKEMG 179 (701)
Q Consensus 166 ~~~~~~~~~~~~~~ 179 (701)
++.|||.-.++||.
T Consensus 219 l~~~~~~gs~~E~~ 232 (455)
T KOG3850|consen 219 LVSPPKYGSDDECS 232 (455)
T ss_pred ccCCCCCCCCcccc
Confidence 34555555555553
No 461
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=6.5e+02 Score=24.28 Aligned_cols=52 Identities=31% Similarity=0.291 Sum_probs=35.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 538 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA 592 (701)
Q Consensus 538 ~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~ 592 (701)
|-.+-...++.--..+.++|. .++|.|+-...+|.-|-+++..++++.++.+
T Consensus 56 Yk~VG~llvk~~k~~~~~eL~---er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 56 YKKVGNLLVKVSKEEAVDELE---ERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHhhhHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433445566555555555554 4577888888888888888888888777655
No 462
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.34 E-value=1.2e+03 Score=27.83 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005339 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (701)
++.+..+++..+..+..+..++....+.+...-.+++++-..+++.+.+.+..
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 33333344444444444444444444444444444455555667777666654
No 463
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.31 E-value=1e+02 Score=31.08 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005339 434 LARIQRIADERTAKAGELEQKV 455 (701)
Q Consensus 434 LaelQrkLeEe~aea~eLeqQl 455 (701)
|..++.++++++-+-.-|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4566666666666655555544
No 464
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=24.20 E-value=9.2e+02 Score=25.97 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=5.4
Q ss_pred HHHHHhhhhHHHH
Q 005339 274 LARVCAGLSSRLQ 286 (701)
Q Consensus 274 La~~~~RLrk~~~ 286 (701)
|..+...|.+.+.
T Consensus 128 l~~l~~~le~~l~ 140 (297)
T PF02841_consen 128 LQELFQPLEEKLK 140 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 465
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.09 E-value=5.4e+02 Score=29.46 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHhHHh
Q 005339 629 VQLQKAAKLLD 639 (701)
Q Consensus 629 rrvk~Aa~~lD 639 (701)
..+..-+..+|
T Consensus 140 ~ei~~~l~l~d 150 (425)
T PRK05431 140 WELGEKLGILD 150 (425)
T ss_pred HHHHhhcCcee
Confidence 45555555655
No 466
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.03 E-value=5.2e+02 Score=29.51 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=7.0
Q ss_pred HHHHHHHhHHh
Q 005339 629 VQLQKAAKLLD 639 (701)
Q Consensus 629 rrvk~Aa~~lD 639 (701)
..+...+..+|
T Consensus 143 ~~l~~~l~l~d 153 (418)
T TIGR00414 143 WELGEKLGGLD 153 (418)
T ss_pred HHHHHhCCCcc
Confidence 45666666666
No 467
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.87 E-value=5e+02 Score=22.82 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339 343 SEIETLVSSIDALKKQAAL-SEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~-~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (701)
.+.=+|.=++.+|++.+.. .-.....+..++-.++-.+..+.++ ++.+...|..+
T Consensus 14 KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e-l~~~~~~l~~a 69 (75)
T PF07989_consen 14 KENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE-LQEKKKLLKEA 69 (75)
T ss_pred HhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3333444455555555442 2333333333333333333333333 33333333333
No 468
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.48 E-value=1.2e+03 Score=27.04 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005339 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (701)
Q Consensus 290 sr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleel 369 (701)
+..+-++.-...+.+.+..|..++..||--...++..+.+..-... ...++.+..++..+..++..++.-+...
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~------~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPS------PKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555567777777778888888887777777666653222 2234456666666666666666666666
Q ss_pred HHHHHHHHH
Q 005339 370 QMNMESIMR 378 (701)
Q Consensus 370 e~E~~rl~e 378 (701)
.--+..+|+
T Consensus 273 kp~WkKiWE 281 (424)
T PF03915_consen 273 KPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 655555554
No 469
>PRK00736 hypothetical protein; Provisional
Probab=23.42 E-value=4.7e+02 Score=22.47 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005339 346 ETLVSSIDALKKQAALS 362 (701)
Q Consensus 346 e~Le~rl~~Le~el~~~ 362 (701)
.+|+.++.+.+.-+..+
T Consensus 8 ~~LE~klafqe~tie~L 24 (68)
T PRK00736 8 TELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33443333333333333
No 470
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=23.13 E-value=9.7e+02 Score=25.87 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhcc
Q 005339 435 ARIQRIADERTAKAGELEQKVAML-EVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~L-E~ElkqLkQeLq~lE~e~~r~q 480 (701)
..+.+.|+.+..+++.|..|+..+ +.++.-+.+.|+.+.-+.+|+|
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQ 206 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677778888888888887766 4567777777777776666665
No 471
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=23.08 E-value=72 Score=29.72 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005339 654 IARIILLFYLVFVHLFLMY 672 (701)
Q Consensus 654 ~aRl~~l~Y~vlLHLWV~~ 672 (701)
..-+|++.|+++-|+|+-.
T Consensus 24 visffllayllmahiwlsw 42 (138)
T PF05663_consen 24 VISFFLLAYLLMAHIWLSW 42 (138)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999754
No 472
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.96 E-value=5e+02 Score=22.48 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 295 LEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
||+.+..+=..|..|...-..|-+++...+.++.++.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444443
No 473
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.94 E-value=8.8e+02 Score=25.33 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=9.7
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEE 297 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEe 297 (701)
..+|++++..+.+++.+|+.
T Consensus 20 ~~~l~~r~~~l~kKi~~ld~ 39 (211)
T PTZ00464 20 SKRIGGRSEVVDARINKIDA 39 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444
No 474
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.80 E-value=1.1e+03 Score=26.18 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
-.-.++++++..-...-..-|.+.+...+.+-+++....+.++..+++..
T Consensus 15 k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~eale 64 (389)
T KOG4687|consen 15 KKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALE 64 (389)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555666666666666666665555554
No 475
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.78 E-value=5.3e+02 Score=22.72 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHhhhHHHHHHHHHHH
Q 005339 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE-------------------SNLAEALAAKNSEIETLVSSID 353 (701)
Q Consensus 293 aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~e-------------------s~~~eaLsak~~eie~Le~rl~ 353 (701)
+++-.....++.....+...+..|+.++.........+. + ..+.+..|..++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~--------~~~~~~~L~~~~~ 72 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQD--------KEEAIEELEERIE 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEE--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhh--------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 354 ALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 354 ~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.++.++..++..+..++..+..++..+
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.75 E-value=2.8e+02 Score=32.47 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 005339 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (701)
Q Consensus 299 l~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~r 365 (701)
|.+++.+...|+.++..|.+++......+...++++. +|+.++..|+.+++..+..
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk-----------eLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE-----------KLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHHHhhhcC
No 477
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.72 E-value=86 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 005339 661 FYLVFVHLFLMYLLHR 676 (701)
Q Consensus 661 ~Y~vlLHLWV~~VL~~ 676 (701)
+|+.+|-++|+.|||+
T Consensus 19 Ly~GlLlifvl~vLFs 34 (39)
T PRK00753 19 LYLGLLLVFVLGILFS 34 (39)
T ss_pred HHHHHHHHHHHHHHHH
No 478
>PTZ00491 major vault protein; Provisional
Probab=22.58 E-value=1.6e+03 Score=28.33 Aligned_cols=133 Identities=22% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA---GELEQKVAMLEVECATLQQELQDMEARLK 477 (701)
Q Consensus 401 ~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea---~eLeqQls~LE~ElkqLkQeLq~lE~e~~ 477 (701)
.++.|+.. ..+..+..+++.+.++. +++.-+.|+..++..++. .-|+-+-....++....-.--...+.+..
T Consensus 654 qlAiEItt--~sqEa~A~h~a~~~eQe---a~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a~a~a~aea~ 728 (850)
T PTZ00491 654 QLAIEITT--KSQEAAARHQAELLEQE---ARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEAR 728 (850)
T ss_pred HHhhhhhc--hhHHHHHHHHHHHHHHH---hhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHHHHHHHHHHH
Q ss_pred hcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHH
Q 005339 478 RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (701)
Q Consensus 478 r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L 557 (701)
+.+-...-+.+ +|++....|. .+.+++.+++.... +..|+++.++|.
T Consensus 729 ~ie~e~~v~~a---~lra~a~~i~---------------~~ael~~~~~~~~~------------e~~~~~~~~~le--- 775 (850)
T PTZ00491 729 LIEAEAEVEQA---ELRAKALRIE---------------AEAELEKLRKRQEL------------ELEYEQAQNELE--- 775 (850)
T ss_pred hhhhhhHHHHH---HhhhHHHHHh---------------hHHHHHHHHHHHHH------------HHHHHHHHhHHH---
Q ss_pred HHHHHHHHHHHHHH
Q 005339 558 YYKQTQLETMASEK 571 (701)
Q Consensus 558 ~eKQ~qlE~L~~Er 571 (701)
+.|..++..++.++
T Consensus 776 ~~k~~~la~ie~~k 789 (850)
T PTZ00491 776 IAKAKELADIEATK 789 (850)
T ss_pred HHHHHHHHHHHHHH
No 479
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.47 E-value=4.4e+02 Score=24.73 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE 392 (701)
+.+..|+..+..+-.++..+|..+.++.+|+.+|.-+-.++-.+ +.-++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~-l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER-LEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
No 480
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.45 E-value=5.2e+02 Score=22.46 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 287 elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
.+..|+..||..+.-+.+....|..-+...+.++...+..+..+...+.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 481
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.34 E-value=9.1e+02 Score=25.39 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHH-HHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 498 DEVERARQGQRDAENKLSSLEAEVQ-KMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (701)
Q Consensus 498 eEL~~lRq~qr~le~kL~slE~elq-kLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~ 576 (701)
+.|+++.-++..++.|...+|-.+. +|..++..|+-|-.+...+..+.-..-...|.+.|-+|..+|=.|+++..-|+.
T Consensus 6 ~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEq 85 (205)
T PF12240_consen 6 ERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQ 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 005339 577 QLEKEMNRLQEVQSEA 592 (701)
Q Consensus 577 qLE~~~~~~~~~~~~~ 592 (701)
.- ..+..++.....+
T Consensus 86 kY-LEEs~mrq~a~dA 100 (205)
T PF12240_consen 86 KY-LEESAMRQFAMDA 100 (205)
T ss_pred HH-HHHHHHHHHHHHH
No 482
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.22 E-value=3.1e+02 Score=24.71 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 302 l~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
..+.-..|+..+..||..|..++.-+.-++.-+.-.-......-..|-.....+-.++..++..+..++..+..|...+.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 005339 382 L 382 (701)
Q Consensus 382 ~ 382 (701)
+
T Consensus 86 ~ 86 (88)
T PF14389_consen 86 Q 86 (88)
T ss_pred h
No 483
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.17 E-value=6e+02 Score=23.06 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~ 360 (701)
|..-+..+......+-..+........+++.++..|..+.......|+.....+. .|..++..|...+.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d-----------~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKD-----------ALDNEMKKLNTQLS 69 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 361 LSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 361 ~~K~rleele~E~~rl~e~l~~~eke 386 (701)
....-++.+.+-=..+...+..++++
T Consensus 70 Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 70 KSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcc
No 484
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.04 E-value=6.8e+02 Score=23.71 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------------------------
Q 005339 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE----------------------------- 346 (701)
Q Consensus 296 Eell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie----------------------------- 346 (701)
+..+..+......|+..+..|+..+.. +.....++...+.+.+....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~----l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEE----LQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005339 347 ----------TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREE 394 (701)
Q Consensus 347 ----------~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~e 394 (701)
++...+..++..+..+...+.+++.+...+.+.++..... ++.+..+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~-l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE-LQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
No 485
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.76 E-value=3.6e+02 Score=25.92 Aligned_cols=98 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccccchhcccC
Q 005339 536 EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 615 (701)
Q Consensus 536 e~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~~~~~sr~sr~~~~~~~dd~~~~~~~ 615 (701)
.+.+++....+|..-.+..+.|..|-+.+.+|.-+...=.----++....++ .++.+.
T Consensus 20 ~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdd----------------dfdsts------ 77 (118)
T KOG3385|consen 20 RASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDD----------------DFDSTS------ 77 (118)
T ss_pred ccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc----------------chhhhH------
Q ss_pred CCccccccchhhhHHHHHHHhHHhhhhHhHhHhhhcchhHHHHHHHHHHHHHHHHHH
Q 005339 616 PLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMY 672 (701)
Q Consensus 616 p~~~~~~~~~~~~rrvk~Aa~~lDs~sir~g~fLRRyP~aRl~~l~Y~vlLHLWV~~ 672 (701)
.++.+-..|++..+.. +-+.+ ..| +++|+.++++-|||++
T Consensus 78 ------~~L~gtm~r~~~~ar~-sg~~l----~~~------m~~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 78 ------GFLSGTMGRLKTMARR-SGISL----LCW------MAVFSLVAFFILWVWL 117 (118)
T ss_pred ------HHHHHHHHHHHHHHhc-CCcch----HHH------HHHHHHHHHHHhheee
No 486
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.74 E-value=6.9e+02 Score=23.67 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES----------------------------- 332 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es----------------------------- 332 (701)
+..++.+.-...++...+..+......|...+..+...+.. +..+..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~----l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET----LEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 333 ----------NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 333 ----------~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
.+.++..-.+..+..|...+..++..+......++.++..+.++..+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.71 E-value=9.7e+02 Score=25.35 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005339 290 SENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKS------EVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (701)
Q Consensus 290 sr~aqLEell~el~ek--------~~~Le~rl~~LQaeL~~EQ~------~l~q~es~~~eaLsak~~eie~Le~rl~~L 355 (701)
.....+|.+.+.++-. ....-.|++.+=.+|..+++ +....+. ..+..++.++++..+..++..|
T Consensus 85 a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~-~~~~~~~~~~~~~~~~~~~~kL 163 (216)
T KOG1962|consen 85 ARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKK-QLENSSKLEEENDKLKADLEKL 163 (216)
T ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhhcccchhhhHHHHHhhHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
+.+++.....++.++.+..-+.-..+.+..+ ...|-++=..+|...+
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E-ydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDE-YDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHh
No 488
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=21.67 E-value=1.3e+03 Score=26.77 Aligned_cols=148 Identities=11% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV----------------SSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le----------------~rl~~Le~el~~~K~rleele~E~~r 375 (701)
++..|..+|...+.-+......+.+.++.....+..+. .....|..+...+-.+++.+|.-.+.
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~ 231 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVED 231 (424)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 376 IMRNREL-----TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450 (701)
Q Consensus 376 l~e~l~~-----~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~e 450 (701)
|...+.. ..+. +.++.++|..+...+..-...-...+- .-+.+-+.. -+.+++-|..+..+-..+.+
T Consensus 232 LRkDV~~RgvRp~~~q-le~v~kdi~~a~~~L~~m~~~i~~~kp----~WkKiWE~E---L~~V~eEQqfL~~QedL~~D 303 (424)
T PF03915_consen 232 LRKDVVQRGVRPSPKQ-LETVAKDISRASKELKKMKEYIKTEKP----IWKKIWESE---LQKVCEEQQFLKLQEDLLSD 303 (424)
T ss_dssp HHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHH
Q 005339 451 LEQKVAMLEVECATLQQ 467 (701)
Q Consensus 451 LeqQls~LE~ElkqLkQ 467 (701)
|...+..+..-+..+.+
T Consensus 304 L~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 304 LKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 489
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.58 E-value=5.7e+02 Score=22.63 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005339 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (701)
Q Consensus 300 ~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleel 369 (701)
..+.+..+.|++++..+.-++...++.|+++.. +.......+|+..+..+-..+..--..|.++
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~------s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDP------SLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.22 E-value=8.2e+02 Score=24.29 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLV-------SSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 317 QaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le-------~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
|+.+......+...-..++..+-+|..++..|. .++..+..|+..++.++.+.....+--+.+
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.59 E-value=1e+02 Score=38.99 Aligned_cols=33 Identities=27% Similarity=0.698 Sum_probs=0.0
Q ss_pred hHhHhHhhh------cchhHHHHHHHH---------HHHHHHHHHHHH
Q 005339 642 AVRATRFLW------RYPIARIILLFY---------LVFVHLFLMYLL 674 (701)
Q Consensus 642 sir~g~fLR------RyP~aRl~~l~Y---------~vlLHLWV~~VL 674 (701)
+||+.|+|| |-|.+||++-+. +++|-||||||+
T Consensus 176 airtvrvlrplrainrvpsmrilvtllldtlpmlgnvlllcffvffif 223 (1956)
T KOG2302|consen 176 AIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIF 223 (1956)
T ss_pred hhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
No 492
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.57 E-value=6.7e+02 Score=26.32 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 293 AQLEELLVAEREL---------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (701)
Q Consensus 293 aqLEell~el~ek---------~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K 363 (701)
..++..+..+.+. ...+-..+..+++.|...+....++.+-+..+ .--.++-.+++++.+.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka---------~~~~d~l~ie~~L~~v~ 175 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKA---------KTVEDLLEIERELSRVR 175 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 005339 364 GNLASLQMNMESIMRNRE 381 (701)
Q Consensus 364 ~rleele~E~~rl~e~l~ 381 (701)
..|+.++.+++.+.++.+
T Consensus 176 ~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 176 SEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHhhc
No 493
>PF14282 FlxA: FlxA-like protein
Probab=20.52 E-value=6.8e+02 Score=23.14 Aligned_cols=62 Identities=13% Similarity=0.298 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (701)
Q Consensus 512 ~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (701)
..|..+...+..|..++..|..+-.-.. .....++..|..++...+.+|..+..+......+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~----e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDA----EQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.36 E-value=1.5e+03 Score=27.07 Aligned_cols=98 Identities=10% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005339 325 SEVTKVESNLAEALAAKNSEIETL--VSSIDALKKQAALSEGN-------LASLQMNMESIMRNRELTETRMIQALREEL 395 (701)
Q Consensus 325 ~~l~q~es~~~eaLsak~~eie~L--e~rl~~Le~el~~~K~r-------leele~E~~rl~e~l~~~ekeilqSLE~eL 395 (701)
......+..+.+.-.+++..+.+| ..++...++.++.++.. +.+..++.+.++.+....-.. +.++..+|
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~-i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQK-IKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 396 ASVERRAEEERAAHNATKMAAMEREVEL 423 (701)
Q Consensus 396 kslq~~le~E~~aH~aTr~ea~~Re~eL 423 (701)
.+.+..+.....+-+.+-..-..|+...
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHHH
No 495
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.18 E-value=1.1e+03 Score=25.51 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--- 382 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~--- 382 (701)
+..++..+.++++++...+..+...+..+. .-...+..++.++...+..++.++.+.++.+.-...
T Consensus 81 ~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~-----------~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~v 149 (346)
T PRK10476 81 PRPYELTVAQAQADLALADAQIMTTQRSVD-----------AERSNAASANEQVERARANAKLATRTLERLEPLLAKGYV 149 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 383 TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQR 439 (701)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQr 439 (701)
...+ +...+..+..++..+..-...+...+. ....+......+..+.+.+..
T Consensus 150 S~~~-~~~a~~~~~~a~~~l~~a~~~~~~~~~----~~~~~~~~~a~~~~~~a~l~~ 201 (346)
T PRK10476 150 SAQQ-VDQARTAQRDAEVSLNQALLQAQAAAA----AVGGVDALVAQRAAREAALAI 201 (346)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHH
No 496
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.11 E-value=1.1e+03 Score=25.22 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--- 382 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~--- 382 (701)
...+...+..+++.+...+..+..++.... .++..+..++..+...+.++..++.+.++.+.-...
T Consensus 75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~i 143 (334)
T TIGR00998 75 PTNAELALAKAEANLAALVRQTKQLEITVQ-----------QLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLI 143 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 383 TETRMIQALREELASVERRAEEERA-AHNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (701)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~-aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLe 442 (701)
...+ +...+..+..++..++.-.. .-.....-.......-+.+.......+...+..++
T Consensus 144 s~~~-~~~a~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 144 SREE-LDHARKALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALK 203 (334)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh
No 497
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.07 E-value=3.8e+02 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
++...++.+..+...+..++.+...++..++++.+..+.++.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!