Query 005339
Match_columns 701
No_of_seqs 170 out of 196
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 99.9 2.7E-21 9.1E-26 186.6 21.6 159 241-415 3-165 (168)
2 1c1g_A Tropomyosin; contractIl 99.2 1.7E-06 6E-11 84.6 43.5 34 550-583 239-272 (284)
3 1c1g_A Tropomyosin; contractIl 99.1 5.6E-06 1.9E-10 81.0 43.5 42 544-585 240-281 (284)
4 1i84_S Smooth muscle myosin he 98.8 7.9E-09 2.7E-13 126.0 10.9 42 544-585 1119-1160(1184)
5 1i84_S Smooth muscle myosin he 98.7 4.6E-08 1.6E-12 119.3 10.8 97 280-380 861-957 (1184)
6 3o0z_A RHO-associated protein 97.2 0.093 3.2E-06 51.0 22.9 91 388-478 64-161 (168)
7 2v71_A Nuclear distribution pr 97.2 0.1 3.5E-06 51.6 23.1 140 299-463 12-154 (189)
8 2v71_A Nuclear distribution pr 97.1 0.11 3.8E-06 51.3 22.7 160 405-589 11-174 (189)
9 3na7_A HP0958; flagellar bioge 97.1 0.19 6.5E-06 51.3 24.9 154 424-589 31-185 (256)
10 3na7_A HP0958; flagellar bioge 96.8 0.33 1.1E-05 49.5 24.1 30 353-382 93-122 (256)
11 2dfs_A Myosin-5A; myosin-V, in 96.6 0.05 1.7E-06 66.2 18.9 118 273-399 918-1043(1080)
12 2dfs_A Myosin-5A; myosin-V, in 96.2 0.16 5.6E-06 61.8 19.9 25 450-474 1020-1044(1080)
13 3vkg_A Dynein heavy chain, cyt 96.1 0.87 3E-05 61.0 27.3 55 428-482 2017-2071(3245)
14 3vkg_A Dynein heavy chain, cyt 95.8 3.8 0.00013 55.1 31.0 86 496-589 2019-2104(3245)
15 2ocy_A RAB guanine nucleotide 95.5 1.5 5.1E-05 42.1 19.4 121 347-476 17-138 (154)
16 2ocy_A RAB guanine nucleotide 95.4 0.66 2.2E-05 44.5 16.5 83 493-579 60-146 (154)
17 2efr_A General control protein 94.8 3.1 0.0001 39.9 23.5 30 348-377 26-55 (155)
18 2b9c_A Striated-muscle alpha t 94.4 0.3 1E-05 46.4 11.2 48 509-557 98-145 (147)
19 2fxo_A Myosin heavy chain, car 94.1 3.6 0.00012 37.9 19.4 100 283-386 20-119 (129)
20 2v66_B Nuclear distribution pr 94.0 2.4 8.3E-05 38.6 15.6 90 448-558 5-94 (111)
21 2efr_A General control protein 93.8 4.9 0.00017 38.6 21.1 85 295-379 26-113 (155)
22 2fxo_A Myosin heavy chain, car 93.2 5.2 0.00018 36.8 19.3 59 415-473 66-124 (129)
23 2v66_B Nuclear distribution pr 92.8 5.6 0.00019 36.2 16.1 62 251-322 6-67 (111)
24 4gkw_A Spindle assembly abnorm 92.8 6.4 0.00022 36.8 17.1 124 455-590 13-140 (167)
25 3oja_B Anopheles plasmodium-re 92.4 2.9 9.8E-05 46.6 16.8 20 361-380 513-532 (597)
26 3u59_A Tropomyosin beta chain; 91.9 5 0.00017 35.4 14.4 65 510-582 35-99 (101)
27 1x79_B RAB GTPase binding effe 91.7 2.5 8.5E-05 38.5 12.4 94 274-381 11-108 (112)
28 3u1c_A Tropomyosin alpha-1 cha 91.4 7.1 0.00024 34.6 14.9 63 512-582 37-99 (101)
29 2e7s_A RAB guanine nucleotide 90.9 1.1 3.9E-05 42.0 9.6 86 310-400 45-131 (135)
30 4gkw_A Spindle assembly abnorm 90.8 11 0.00036 35.4 19.1 46 428-473 115-160 (167)
31 2e7s_A RAB guanine nucleotide 89.2 1.1 3.8E-05 42.1 8.0 108 268-378 21-131 (135)
32 3tnu_B Keratin, type II cytosk 84.7 21 0.00071 32.7 13.8 22 388-409 84-105 (129)
33 3s4r_A Vimentin; alpha-helix, 84.6 7.5 0.00026 34.1 10.3 68 512-582 23-90 (93)
34 3mq9_A Bone marrow stromal ant 84.0 9.7 0.00033 41.3 13.3 25 508-532 446-470 (471)
35 3a7p_A Autophagy protein 16; c 84.0 12 0.00041 35.7 12.1 70 309-382 66-135 (152)
36 1ic2_A Tropomyosin alpha chain 83.5 17 0.00057 30.8 11.8 29 351-379 21-49 (81)
37 3tnu_B Keratin, type II cytosk 83.4 23 0.0008 32.3 13.6 12 398-409 111-122 (129)
38 3tnu_A Keratin, type I cytoske 83.1 20 0.00067 32.9 13.0 21 388-408 86-106 (131)
39 2eqb_B RAB guanine nucleotide 82.9 25 0.00086 31.2 13.6 67 311-381 26-93 (97)
40 3hnw_A Uncharacterized protein 82.9 29 0.00098 32.5 14.1 18 272-289 28-45 (138)
41 3tnu_A Keratin, type I cytoske 82.8 23 0.00079 32.5 13.4 12 398-409 113-124 (131)
42 3hnw_A Uncharacterized protein 82.1 13 0.00046 34.7 11.6 51 347-398 79-129 (138)
43 2jee_A YIIU; FTSZ, septum, coi 81.5 15 0.0005 31.8 10.5 69 510-586 11-79 (81)
44 3a7p_A Autophagy protein 16; c 81.4 11 0.00039 35.9 10.8 46 544-589 78-123 (152)
45 1x79_B RAB GTPase binding effe 81.1 21 0.00072 32.5 12.0 77 306-382 8-84 (112)
46 3q8t_A Beclin-1; autophagy, AT 81.0 27 0.00092 30.7 12.5 39 544-582 56-94 (96)
47 3cve_A Homer protein homolog 1 80.7 19 0.00065 30.4 10.7 47 340-386 11-57 (72)
48 2jee_A YIIU; FTSZ, septum, coi 79.8 18 0.00063 31.1 10.5 43 344-386 28-70 (81)
49 3ghg_A Fibrinogen alpha chain; 79.5 47 0.0016 37.4 16.4 14 568-581 232-245 (562)
50 3ol1_A Vimentin; structural ge 79.2 35 0.0012 30.9 13.1 19 543-561 85-103 (119)
51 3mq7_A Bone marrow stromal ant 79.2 26 0.0009 32.1 11.9 13 317-329 31-43 (121)
52 3s4r_A Vimentin; alpha-helix, 78.3 34 0.0012 29.9 13.3 38 342-379 55-92 (93)
53 3mq9_A Bone marrow stromal ant 78.1 45 0.0016 35.9 16.0 19 314-332 400-418 (471)
54 1l8d_A DNA double-strand break 77.0 37 0.0013 29.7 13.3 78 508-585 20-101 (112)
55 3cvf_A Homer-3, homer protein 75.0 27 0.00091 30.0 10.2 46 341-386 18-63 (79)
56 2i1j_A Moesin; FERM, coiled-co 75.0 2.6 9E-05 47.9 5.3 14 8-21 26-39 (575)
57 1ic2_A Tropomyosin alpha chain 74.8 37 0.0013 28.6 11.6 21 312-332 7-27 (81)
58 1m1j_B Fibrinogen beta chain; 73.9 1E+02 0.0036 34.2 17.4 15 283-297 100-114 (464)
59 3i00_A HIP-I, huntingtin-inter 73.2 20 0.00069 32.9 9.7 40 543-582 42-81 (120)
60 1f5n_A Interferon-induced guan 70.7 98 0.0034 35.3 16.8 95 233-332 445-547 (592)
61 2v4h_A NF-kappa-B essential mo 70.7 62 0.0021 29.3 12.9 23 562-584 83-105 (110)
62 3swk_A Vimentin; cytoskeleton, 67.7 32 0.0011 29.6 9.3 36 516-559 46-81 (86)
63 3iox_A AGI/II, PA; alpha helix 67.1 1.3E+02 0.0043 33.8 16.0 30 308-337 6-35 (497)
64 3ol1_A Vimentin; structural ge 66.9 74 0.0025 28.8 15.2 24 383-407 88-111 (119)
65 3cvf_A Homer-3, homer protein 64.0 54 0.0018 28.1 9.7 62 341-403 11-72 (79)
66 3tul_A Cell invasion protein S 63.9 1E+02 0.0035 29.3 12.7 103 307-409 23-130 (158)
67 3cve_A Homer protein homolog 1 62.7 69 0.0024 27.0 10.4 60 343-403 7-66 (72)
68 2eqb_B RAB guanine nucleotide 62.2 85 0.0029 27.9 14.1 78 279-359 15-92 (97)
69 3jsv_C NF-kappa-B essential mo 61.8 43 0.0015 29.6 8.9 27 306-332 42-68 (94)
70 3mq7_A Bone marrow stromal ant 61.1 1E+02 0.0034 28.3 14.9 32 345-376 73-104 (121)
71 2xdj_A Uncharacterized protein 59.7 84 0.0029 27.0 10.5 61 419-479 7-67 (83)
72 1t3j_A Mitofusin 1; coiled coi 58.8 33 0.0011 30.5 7.7 65 248-326 29-93 (96)
73 2xdj_A Uncharacterized protein 58.5 81 0.0028 27.1 10.0 35 347-381 24-58 (83)
74 2w83_C C-JUN-amino-terminal ki 58.3 34 0.0012 29.2 7.3 56 320-375 21-76 (77)
75 1m1j_C Fibrinogen gamma chain; 58.1 82 0.0028 34.4 12.5 45 428-472 23-67 (409)
76 3q8t_A Beclin-1; autophagy, AT 56.6 1E+02 0.0035 27.0 14.7 53 349-402 31-83 (96)
77 3i00_A HIP-I, huntingtin-inter 55.9 97 0.0033 28.3 10.7 63 313-382 17-79 (120)
78 1wt6_A Myotonin-protein kinase 55.2 1E+02 0.0035 26.5 9.9 22 358-379 46-67 (81)
79 3oja_A Leucine-rich immune mol 54.0 2.4E+02 0.0081 30.4 18.8 33 546-578 454-486 (487)
80 1f5n_A Interferon-induced guan 53.6 1.8E+02 0.006 33.2 14.8 56 414-469 462-517 (592)
81 1gk4_A Vimentin; intermediate 52.3 1.1E+02 0.0037 26.0 11.6 50 286-335 4-57 (84)
82 2no2_A HIP-I, huntingtin-inter 52.1 1.3E+02 0.0045 26.9 14.6 31 350-380 61-91 (107)
83 1d7m_A Cortexillin I; coiled-c 52.1 1.2E+02 0.0042 26.5 14.4 26 421-446 35-60 (101)
84 3ghg_A Fibrinogen alpha chain; 50.4 1.7E+02 0.0059 33.0 13.4 15 645-659 487-501 (562)
85 2v4h_A NF-kappa-B essential mo 50.0 1.5E+02 0.0051 26.9 12.7 13 274-286 26-38 (110)
86 2oto_A M protein; helical coil 49.9 1.6E+02 0.0056 27.4 18.7 32 278-309 45-76 (155)
87 3iv1_A Tumor susceptibility ge 49.6 1.2E+02 0.0042 25.8 11.6 31 340-370 43-73 (78)
88 2w6a_A ARF GTPase-activating p 48.8 65 0.0022 26.3 7.2 46 279-324 16-61 (63)
89 1m1j_C Fibrinogen gamma chain; 48.1 1.6E+02 0.0055 32.1 12.8 29 282-310 30-58 (409)
90 1ci6_A Transcription factor AT 47.3 57 0.002 26.4 6.9 40 341-380 21-60 (63)
91 3swk_A Vimentin; cytoskeleton, 46.4 1.4E+02 0.0048 25.5 11.4 28 308-335 11-38 (86)
92 1l8d_A DNA double-strand break 46.2 1.5E+02 0.005 25.8 13.3 15 306-320 26-40 (112)
93 1ik9_A DNA repair protein XRCC 45.8 1.7E+02 0.0058 29.1 11.6 57 349-405 145-201 (213)
94 1d7m_A Cortexillin I; coiled-c 44.3 1.6E+02 0.0056 25.8 15.5 54 309-373 2-55 (101)
95 1x8y_A Lamin A/C; structural p 43.9 1.4E+02 0.0047 25.5 9.2 24 312-335 36-59 (86)
96 3iyk_A VP5; icosahedral virus; 43.9 3.9E+02 0.013 30.0 20.2 80 341-423 144-223 (526)
97 1wt6_A Myotonin-protein kinase 43.7 1.5E+02 0.005 25.6 9.1 55 255-320 14-68 (81)
98 3mov_A Lamin-B1; LMNB1, B-type 43.3 1.3E+02 0.0044 26.4 9.0 22 343-364 12-33 (95)
99 3oja_A Leucine-rich immune mol 43.2 3.4E+02 0.012 29.1 18.2 28 421-448 445-472 (487)
100 1deq_A Fibrinogen (alpha chain 42.9 3.6E+02 0.012 29.3 17.2 23 360-382 63-85 (390)
101 3ghg_C Fibrinogen gamma chain; 42.6 2.9E+02 0.01 30.2 13.7 39 281-319 29-67 (411)
102 1wle_A Seryl-tRNA synthetase; 42.2 1.7E+02 0.0057 32.8 12.0 68 311-378 77-151 (501)
103 3ni0_A Bone marrow stromal ant 40.5 2E+02 0.0067 25.5 9.8 16 316-331 23-38 (99)
104 1t2k_D Cyclic-AMP-dependent tr 40.4 79 0.0027 25.1 6.7 39 341-379 20-58 (61)
105 3mov_A Lamin-B1; LMNB1, B-type 39.9 1.1E+02 0.0038 26.8 8.1 22 309-330 42-63 (95)
106 3nmd_A CGMP dependent protein 39.4 72 0.0025 26.9 6.4 27 342-368 39-65 (72)
107 3iv1_A Tumor susceptibility ge 38.3 1.6E+02 0.0056 25.1 8.6 16 251-266 14-29 (78)
108 3efg_A Protein SLYX homolog; x 38.0 53 0.0018 27.8 5.5 47 279-325 10-56 (78)
109 1deq_A Fibrinogen (alpha chain 37.3 4.3E+02 0.015 28.6 14.7 40 355-395 118-157 (390)
110 2oqq_A Transcription factor HY 34.9 1.1E+02 0.0037 23.3 6.0 34 345-378 5-38 (42)
111 1jcd_A Major outer membrane li 34.8 1.6E+02 0.0056 23.2 7.5 43 545-587 8-50 (52)
112 2ke4_A CDC42-interacting prote 34.2 2.4E+02 0.0083 24.8 9.5 27 305-331 16-42 (98)
113 3nmd_A CGMP dependent protein 34.1 1.2E+02 0.0041 25.6 6.9 34 341-374 31-64 (72)
114 1jnm_A Proto-oncogene C-JUN; B 33.4 1.5E+02 0.0053 23.5 7.4 39 341-379 20-58 (62)
115 3qh9_A Liprin-beta-2; coiled-c 33.1 2.3E+02 0.008 24.3 9.6 57 292-352 18-77 (81)
116 1go4_E MAD1 (mitotic arrest de 33.0 1.3E+02 0.0044 26.8 7.4 32 447-478 13-44 (100)
117 3m9b_A Proteasome-associated A 32.9 43 0.0015 34.4 4.9 70 519-588 24-94 (251)
118 2zqm_A Prefoldin beta subunit 32.5 2.4E+02 0.0083 24.3 12.9 29 347-375 74-102 (117)
119 2wt7_A Proto-oncogene protein 32.4 1.4E+02 0.0047 24.0 6.9 40 341-380 21-60 (63)
120 3qne_A Seryl-tRNA synthetase, 31.8 1.6E+02 0.0054 32.9 9.7 70 309-379 38-107 (485)
121 2no2_A HIP-I, huntingtin-inter 31.6 2.8E+02 0.0095 24.7 15.6 41 337-377 62-102 (107)
122 3cl3_D NF-kappa-B essential mo 31.4 77 0.0026 29.5 5.8 76 300-382 26-101 (130)
123 1x8y_A Lamin A/C; structural p 31.2 2.4E+02 0.0084 23.9 9.6 10 399-408 65-74 (86)
124 1ses_A Seryl-tRNA synthetase; 30.7 1.5E+02 0.0053 32.1 9.2 66 309-377 33-98 (421)
125 2dq0_A Seryl-tRNA synthetase; 30.3 1.7E+02 0.0057 32.2 9.5 71 309-380 36-106 (455)
126 2pnv_A Small conductance calci 30.0 1E+02 0.0036 23.4 5.4 28 298-325 10-37 (43)
127 3cl3_D NF-kappa-B essential mo 29.4 1E+02 0.0036 28.6 6.3 45 352-397 4-48 (130)
128 3qh9_A Liprin-beta-2; coiled-c 29.3 2.7E+02 0.0094 23.9 9.3 30 546-575 45-74 (81)
129 2k48_A Nucleoprotein; viral pr 28.8 2.1E+02 0.007 25.8 7.9 30 344-373 36-65 (107)
130 4dk0_A Putative MACA; alpha-ha 28.4 1E+02 0.0035 31.7 7.1 21 355-375 127-147 (369)
131 3q0x_A Centriole protein; cent 27.2 1.2E+02 0.0041 30.7 7.0 43 546-588 169-211 (228)
132 1m1j_A Fibrinogen alpha subuni 26.8 7E+02 0.024 27.8 13.6 93 494-586 61-156 (491)
133 4emc_A Monopolin complex subun 25.8 1E+02 0.0035 30.4 5.9 49 353-402 9-57 (190)
134 3trt_A Vimentin; cytoskeleton, 25.7 2.7E+02 0.0093 22.7 10.6 44 544-587 31-74 (77)
135 1g6u_A Domain swapped dimer; d 25.7 2E+02 0.0069 21.6 6.1 12 517-528 25-36 (48)
136 3c9i_A Tail needle protein GP2 25.5 4.7E+02 0.016 26.2 10.6 31 337-367 99-129 (242)
137 3iox_A AGI/II, PA; alpha helix 25.4 7.5E+02 0.026 27.7 15.3 23 308-330 13-35 (497)
138 3swy_A Cyclic nucleotide-gated 25.3 2.3E+02 0.008 21.8 6.8 27 306-332 7-33 (46)
139 2lw1_A ABC transporter ATP-bin 25.2 3.1E+02 0.011 23.2 9.5 53 510-571 27-79 (89)
140 3m91_A Proteasome-associated A 25.2 2.3E+02 0.0079 22.2 6.8 7 291-297 24-30 (51)
141 2ww9_C Protein transport prote 24.0 23 0.0008 30.9 1.0 15 657-671 69-83 (87)
142 3t98_B Nucleoporin NUP58/NUP45 23.7 3.1E+02 0.011 23.9 8.1 73 276-369 12-84 (93)
143 4dzn_A Coiled-coil peptide CC- 23.4 1.7E+02 0.0058 20.5 5.0 23 378-401 9-31 (33)
144 2wwb_C SEC61BETA, protein tran 23.2 18 0.00061 32.1 0.1 14 657-670 78-91 (96)
145 2p22_A Suppressor protein STP2 23.0 3.7E+02 0.013 26.0 9.3 27 341-367 61-87 (174)
146 3a7o_A Autophagy protein 16; c 22.6 3.5E+02 0.012 22.8 8.9 39 547-585 31-69 (75)
147 1m1j_B Fibrinogen beta chain; 22.2 8.3E+02 0.028 27.0 17.6 21 284-304 94-114 (464)
148 1t3j_A Mitofusin 1; coiled coi 22.0 3.2E+02 0.011 24.2 7.8 36 341-376 52-90 (96)
149 3arc_L Photosystem II reaction 21.7 63 0.0021 23.8 2.6 16 661-676 17-32 (37)
150 2dq0_A Seryl-tRNA synthetase; 21.6 2.8E+02 0.0096 30.4 9.2 12 628-639 162-173 (455)
151 2w6a_A ARF GTPase-activating p 21.6 3.3E+02 0.011 22.2 7.3 41 336-376 20-60 (63)
152 4etp_A Kinesin-like protein KA 21.6 2.2E+02 0.0075 30.7 8.2 38 344-381 4-41 (403)
153 3m91_A Proteasome-associated A 21.2 1.8E+02 0.0063 22.8 5.5 41 282-322 8-48 (51)
154 4h22_A Leucine-rich repeat fli 21.0 4.5E+02 0.015 23.5 11.6 27 351-377 52-78 (103)
155 1cxz_B Protein (PKN); protein- 20.5 2.9E+02 0.0098 24.0 7.1 49 248-300 18-66 (86)
156 3qne_A Seryl-tRNA synthetase, 20.1 3.2E+02 0.011 30.5 9.3 32 628-659 154-189 (485)
157 3u06_A Protein claret segregat 20.0 1.7E+02 0.0059 31.7 7.0 33 293-325 6-38 (412)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=186.58 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=139.9
Q ss_pred hcCCCChhhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (701)
Q Consensus 241 ~~~ek~~~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL 320 (701)
+.|+|+++|++||+|+|.+||+|+|+ ++||+|..+++.+..+++|..+++++++++.|++....|+.++
T Consensus 3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999996 9999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHH
Q 005339 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA 396 (701)
Q Consensus 321 ~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE----~eLk 396 (701)
...|..+.+.++ ... -+.+.+.+|++++.+|+.++.+++.++.+++.+++.|++++++++|+ +++++ ++|+
T Consensus 72 ~~LQa~L~qEr~-~r~---q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK 146 (168)
T 3o0z_A 72 YQLQAILEAERR-DRG---HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 888888888876 222 36788889999999999999999999999999999999999999999 99999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005339 397 SVERRAEEERAAHNATKMA 415 (701)
Q Consensus 397 slq~~le~E~~aH~aTr~e 415 (701)
++|++|++|..+|++|++.
T Consensus 147 alQ~~~eqE~~~H~~Tkar 165 (168)
T 3o0z_A 147 SLQQRLEQEVNEHKVTKAR 165 (168)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999773
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.20 E-value=1.7e-06 Score=84.56 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 550 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (701)
Q Consensus 550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (701)
+..+...+...+..+..+..+.+.+..++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
T 1c1g_A 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE 272 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444333333333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.14 E-value=5.6e-06 Score=80.97 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
..++..+..+...+...+..+..+....+.+..+++.+..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 240 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666666666666666655544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.81 E-value=7.9e-09 Score=125.98 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
..++.++.+|.++|.+.......+..++..|..+++.+..++
T Consensus 1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.66 E-value=4.6e-08 Score=119.29 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005339 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (701)
Q Consensus 280 RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el 359 (701)
.|++.+.+++.....++..+.++......|+.++..++.+|..++..+...+..+ ......+..|+.++..++.++
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l----~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR----VRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555666666655555555444333211 222333444444444444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHh
Q 005339 360 ALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l 380 (701)
...+..+.+++.++..+...+
T Consensus 937 ee~ee~l~el~~e~~~le~el 957 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKMQQQM 957 (1184)
T ss_dssp HHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.23 E-value=0.093 Score=50.95 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----H
Q 005339 388 IQALREELASVERRAEEERAAHNATK---MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE----V 460 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTr---~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE----~ 460 (701)
+.+|+.++..+|..++.|+....... .+...|...|+.+...+-..+..+.-.-..-.-++..|++..+.++ +
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 55566667777777777765433222 2333344444333322222111111111111134456666666666 5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005339 461 ECATLQQELQDMEARLKR 478 (701)
Q Consensus 461 ElkqLkQeLq~lE~e~~r 478 (701)
+++.+++.++.-...+..
T Consensus 144 eLKalQ~~~eqE~~~H~~ 161 (168)
T 3o0z_A 144 KLKSLQQRLEQEVNEHKV 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577777777665554443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.1 Score=51.62 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 299 l~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
+.--++.+..+..++.+|+.+|..-|+.=..++. +|+..|..++.....++.++..+..+.+.++.
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--------------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--------------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666777777777775555555554 55555555555666666666666666555555
Q ss_pred HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 379 NRELTETR---MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455 (701)
Q Consensus 379 ~l~~~eke---ilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQl 455 (701)
++.....+ .+++|+.+|..++.. +.....++.+||..|..|..+.-+..-.+..--.+...+=++.
T Consensus 78 K~~~~~~e~~~~~~~Lq~el~~l~~~-----------~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 78 KLEHQYAQSYKQVSVLEDDLSQTRAI-----------KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55443111 255555555555422 2333345666666655554443333333333333333333444
Q ss_pred HhHHHHHH
Q 005339 456 AMLEVECA 463 (701)
Q Consensus 456 s~LE~Elk 463 (701)
.+|+.+++
T Consensus 147 alLE~El~ 154 (189)
T 2v71_A 147 AFLESELD 154 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.12 E-value=0.11 Score=51.33 Aligned_cols=160 Identities=14% Similarity=0.185 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 005339 405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (701)
Q Consensus 405 E~~aH~aTr~ea~~Re~eLEee~aeLseALaelQrkLeEe~----aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~q 480 (701)
|...++..-.+...+...++.+..++.+.-.+++..++.++ .+...|..++..|..++..++.++.....+...
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~-- 88 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK-- 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444445555666667666666665555555555544 445677777777777777777777555544333
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 005339 481 KKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (701)
Q Consensus 481 ek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eK 560 (701)
++-.++.||..++...+.+..+|..+|....-|....+.. ..+-.+++.+++...|..+-.
T Consensus 89 -----------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~--------~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 89 -----------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT--------IMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHH
Confidence 3345677788888777777777777777777777665331 123477788888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 561 QTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
+..++ |+..|...++|+.-.++...
T Consensus 150 E~El~----EKe~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 150 ESELD----EKESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp HHHHH----HHHHHHCCC-----------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 66665 57777777777665555443
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.07 E-value=0.19 Score=51.28 Aligned_cols=154 Identities=9% Similarity=0.079 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH
Q 005339 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503 (701)
Q Consensus 424 Eee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~l 503 (701)
..+...+...+..+...+......+.+++.++..++.++...+..+..++.++....+.- ++.++..||..+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k--------E~~aL~kEie~~ 102 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER--------ELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHH
Confidence 344445555666777777777778888888888889999999999988888887765322 344556666666
Q ss_pred HHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 005339 504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE-KEM 582 (701)
Q Consensus 504 Rq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE-~~~ 582 (701)
...+..++..+..+...+..++..+..++..+. .....++..-.++.+.+.+....+..+..++..+...+. .+.
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~----~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL 178 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEML----ELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIY 178 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 655555555555555555555555544443321 112334444455555555555666666666666666654 334
Q ss_pred HHHHHHH
Q 005339 583 NRLQEVQ 589 (701)
Q Consensus 583 ~~~~~~~ 589 (701)
..|+...
T Consensus 179 ~~Yerir 185 (256)
T 3na7_A 179 SFYERIR 185 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5665543
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.82 E-value=0.33 Score=49.52 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
.++..++..++.++..++.+...+++.+..
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.62 E-value=0.05 Score=66.20 Aligned_cols=118 Identities=10% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS----YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (701)
Q Consensus 273 qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~----Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~L 348 (701)
.|...+.+|+..+.++..+...+|..+..++++.+. +..++..|+.++..++...... ...++.+.+|
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~--------~~~~~~v~~L 989 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA--------KNATNRVLSL 989 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 455567888888888888887777777777766543 3334555554444433321111 1223344444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHH
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMR----NRELTETRMIQALREELASVE 399 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e----~l~~~ekeilqSLE~eLkslq 399 (701)
+.++..+++++..+......+++...++++ .+++++++ ++.|+..+..+.
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e-~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ-NTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444444444444444444444444443 33333444 444444333333
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.18 E-value=0.16 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 005339 450 ELEQKVAMLEVECATLQQELQDMEA 474 (701)
Q Consensus 450 eLeqQls~LE~ElkqLkQeLq~lE~ 474 (701)
+|+.+++.|+.+...|++.+++++.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555553
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.11 E-value=0.87 Score=61.04 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek 482 (701)
+.+...+...+.+|.+...++.+++.++..|..+++.+..+-+.++.++...+.+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556666666666666666666655555555555555433
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.77 E-value=3.8 Score=55.15 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 496 lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
++.++...+.....++.+|..+++.++.|+.+..... .....++.++.....+|..-+.-+..|..|+.-+.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--------~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLI--------RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 3334444443334444444444444444444432211 22456777788888888888889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005339 576 FQLEKEMNRLQEVQ 589 (701)
Q Consensus 576 ~qLE~~~~~~~~~~ 589 (701)
.+.+.+..++...-
T Consensus 2091 ~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2091 QQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 98888877766654
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.54 E-value=1.5 Score=42.08 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re~eLEee 426 (701)
+|++.+..+..++...+.++..++....++.. +..+ +.....+++.+...+..|... |..+......++.+
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l~~~-~~~~~~e~~~L~~~l~~E~~~----R~~aE~~~~~ie~E 87 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----LKRE-LSDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKE 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----HHTH-HHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 55555555555555555555554443332222 2233 444566677787777766553 55566678888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 427 AAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (701)
Q Consensus 427 ~aeLseAL-aelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~ 476 (701)
..+|+.+| .+..+++..++.....++.+...|+..+..-...|..++.++
T Consensus 88 lEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 445666666665555555555555544444444444333333
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.42 E-value=0.66 Score=44.52 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH----HHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM----AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA 568 (701)
Q Consensus 493 Lk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~----~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~ 568 (701)
+..+..++...+.....++......+.++..|...+ ..|=.. -.-....++.|+..|..+|.++...++.+.
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~----ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD----ARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666777777776653 000000 011357788999999999999999999888
Q ss_pred HHHHHHHHHHH
Q 005339 569 SEKAAAEFQLE 579 (701)
Q Consensus 569 ~Er~sL~~qLE 579 (701)
.....|..-++
T Consensus 136 ~ql~~LK~v~~ 146 (154)
T 2ocy_A 136 LQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 87777665443
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.77 E-value=3.1 Score=39.94 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 348 LVSSIDALKKQAALSEGNLASLQMNMESIM 377 (701)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (701)
+++.+..++..+.....++.+++.+++.+-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554443
No 18
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.38 E-value=0.3 Score=46.40 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHH
Q 005339 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (701)
Q Consensus 509 ~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L 557 (701)
.++.++..++.++..+-+.++.|..+-+.|+ +....|+.+|+.|++.|
T Consensus 98 ~aE~k~~eLEeeL~~~~~nlKsLE~~eekas-~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNLKSLEDKVEELL-SKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3455666677777777777777776555544 67899999999988765
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.08 E-value=3.6 Score=37.90 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (701)
Q Consensus 283 k~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~ 362 (701)
+.+..++.....-|....++.+....|...+..|+..|..++..+...+..+. + .......|+..+..++..+...
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~-~---L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD-Q---LIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444455556777778888888888888887776665332 3 4444456666777777777777
Q ss_pred HhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 363 EGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 363 K~rleele~E~~rl~e~l~~~eke 386 (701)
..+...+....+.+.+.+.++.+.
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666666555
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.96 E-value=2.4 Score=38.57 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005339 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (701)
Q Consensus 448 a~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e 527 (701)
..+|..++..|..++++++.++.....+... .+-.++.||..+|...+.+..+|..+|.....|...
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~-------------~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYK-------------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 4567777778888888888777665444333 334578888888888888777777777777666665
Q ss_pred HHHhhhhhhhcchhhhhHHHHHHHHHHHHHH
Q 005339 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLY 558 (701)
Q Consensus 528 ~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~ 558 (701)
-+. .+.+-.+++++++...|.-+
T Consensus 72 ~R~--------t~~SLeD~E~k~n~aiErna 94 (111)
T 2v66_B 72 KRA--------TIVSLEDFEQRLNQAIERNA 94 (111)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHhhHHHHHHHHHHHHHHHH
Confidence 422 11224566667665544433
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.84 E-value=4.9 Score=38.56 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005339 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (701)
Q Consensus 295 LEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es---~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~ 371 (701)
+|.-|.+-.++....+.++..|+.+|...-..+..++- .+..+...-...|..|..++..++..+......+.+++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566666666666666655555552 233333333344444444444444444444444444444
Q ss_pred HHHHHHHH
Q 005339 372 NMESIMRN 379 (701)
Q Consensus 372 E~~rl~e~ 379 (701)
+++++-+.
T Consensus 106 ~id~lEd~ 113 (155)
T 2efr_A 106 SIDDLEDE 113 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.16 E-value=5.2 Score=36.82 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 415 ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
++..+...|.....+|..-+..++..+++.-.....|...-.-++.++..++..|++++
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666666666666666666666666666666666666554
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.80 E-value=5.6 Score=36.21 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 251 kQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
+.|-..+..|+.|++. .+.++.....+..+.+..|+..+..+++....|...|..|+.....
T Consensus 6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4566667777777775 6777777777777777777777777777777777777777666544
No 24
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=92.76 E-value=6.4 Score=36.82 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=72.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH----HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005339 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW----QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (701)
Q Consensus 455 ls~LE~ElkqLkQeLq~lE~e~~r~qek~~~ea~q~~qLk~l----keEL~~lRq~qr~le~kL~slE~elqkLr~e~~~ 530 (701)
++.|+.|++.++.+++.-..++.-.-+-+.++...+-||+.. +.||.++|-....+...|. +....++
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~-------K~~~~Lk- 84 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE-------KADQLLK- 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH-------HHHHHHH-
Confidence 455677777777777776666666554444444444444332 3444444433322222222 1111111
Q ss_pred hhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (701)
Q Consensus 531 Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~~ 590 (701)
+...+ ..+ ...-=+.+++|--.|.+|-+.++.|..-.-.|...||...-++.++-.
T Consensus 85 --rn~~q-QnQ-QSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~Md 140 (167)
T 4gkw_A 85 --RNSQQ-QNQ-QSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMD 140 (167)
T ss_dssp --HHHHH-HHH-HHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHH-HhH-hhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 011 122236789999999999999999999999999999987777666543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.41 E-value=2.9 Score=46.56 Aligned_cols=20 Identities=5% Similarity=-0.190 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHHHHh
Q 005339 361 LSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 361 ~~K~rleele~E~~rl~e~l 380 (701)
..+.+.+..+.+..+..+..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhh
Confidence 33333333333333333333
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.88 E-value=5 Score=35.43 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
++.+....+.++..|.+.+..+.+++ -.++.++......|..........+++..+|..+++.++
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~el--------d~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEV--------EKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444446667777777776666554 346678899999999999999999999999999988753
No 27
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.73 E-value=2.5 Score=38.55 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=48.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005339 274 LARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (701)
Q Consensus 274 La~~~~RLrk~~~elksr~aqLEell~el~ek----~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le 349 (701)
|+....+|++.+......-..||+.+.+-.+- ...|..++..-|+.|...|..+.+.++ +.+
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~--------------~vq 76 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR--------------DVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 34444555555555555556666655544443 456666777888888888888888777 344
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
..+..|...-+.....|..++.+++.|..++.
T Consensus 77 ~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 45555566666677777778888877766543
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.44 E-value=7.1 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=45.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 512 ~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
.+....+.++..|...+..+..++ -.++.++....+.|.+........+++..+|..+++.+.
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~el--------d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSR--------DQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333445566666666655544444 335568888899999999999999999999999988764
No 29
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.95 E-value=1.1 Score=42.00 Aligned_cols=86 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005339 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (701)
Q Consensus 310 e~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil 388 (701)
...+..|..+|..++..+...+. .....+.++++|-..+ ..++..+...+..-..++.-++.+...+.+.+.. +
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l-l 119 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML-L 119 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33555566666666665555554 2334566666666655 6666666666666666666667776666666555 6
Q ss_pred HHHHHHHHHHHH
Q 005339 389 QALREELASVER 400 (701)
Q Consensus 389 qSLE~eLkslq~ 400 (701)
.+++..|..|+.
T Consensus 120 ~~lq~QL~~LK~ 131 (135)
T 2e7s_A 120 DTLTLQLKNLKK 131 (135)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 666655555543
No 30
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.82 E-value=11 Score=35.37 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE 473 (701)
..|.+.+-.+.+.|+.++.++.+.---+..|.++-+.++++|..+.
T Consensus 115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 4456667788888888888887777777778888888888886543
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.21 E-value=1.1 Score=42.06 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005339 268 QSKEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE 344 (701)
Q Consensus 268 ~~ke~qLa~~~~RLrk~~~elksr~aqLEel---l~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~e 344 (701)
..+..++..++..+.....++..-...+..+ +.+.+.+....+..+..++.+|...-.+++..-+.|... ..-+
T Consensus 21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~ 97 (135)
T 2e7s_A 21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARME 97 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3455556665555555444444333333333 333344566677788999999999999999888877744 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
...++.+...|+..+......++.++.++..|+.
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888887766654
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.67 E-value=21 Score=32.67 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEEERAAH 409 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH 409 (701)
+..|+.+|..++..++.....|
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444555554444444433
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.64 E-value=7.5 Score=34.06 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=41.1
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 512 ~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
++...+|.+...|..+|..++.+- ++.....|+.-|..|+..+......-..+..|+..|...++.+.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777776665421 22334567788888876666666655556666665555555543
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.03 E-value=9.7 Score=41.26 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=12.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhh
Q 005339 508 RDAENKLSSLEAEVQKMRVEMAAMK 532 (701)
Q Consensus 508 r~le~kL~slE~elqkLr~e~~~Lk 532 (701)
.+++..|..++.+++.++.++++++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555443
No 35
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.01 E-value=12 Score=35.73 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
+.+.+..|+.++...+..+.+++..+. .|+..++.|.+++.+|+-++..+..++.+++.|++.|-++.=.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~----eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIA----LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777776666666665333 4677888899999999999999999999999998777666544
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.48 E-value=17 Score=30.78 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
+...++.++.....+...++.++..++.+
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333333
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.35 E-value=23 Score=32.31 Aligned_cols=12 Identities=17% Similarity=0.003 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 005339 398 VERRAEEERAAH 409 (701)
Q Consensus 398 lq~~le~E~~aH 409 (701)
.+-+|+.|+..|
T Consensus 111 vKl~Ld~EIatY 122 (129)
T 3tnu_B 111 TKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.13 E-value=20 Score=32.93 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005339 388 IQALREELASVERRAEEERAA 408 (701)
Q Consensus 388 lqSLE~eLkslq~~le~E~~a 408 (701)
+..|+.+|..++..++.....
T Consensus 86 i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.88 E-value=25 Score=31.23 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
..+..|..+|..++..+...+. .....+.++++|-..| ..++..+...+..-..++.-+++|...+.
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555554444443 2233455555555544 55555555555444445555555544443
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.86 E-value=29 Score=32.46 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 005339 272 ARLARVCAGLSSRLQEYK 289 (701)
Q Consensus 272 ~qLa~~~~RLrk~~~elk 289 (701)
.-|..++.-+.++..+++
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.78 E-value=23 Score=32.46 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 005339 398 VERRAEEERAAH 409 (701)
Q Consensus 398 lq~~le~E~~aH 409 (701)
.+-+|+.|+..|
T Consensus 113 vKl~Ld~EIatY 124 (131)
T 3tnu_A 113 VKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.08 E-value=13 Score=34.68 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (701)
.|+..+..+..++..+|..+..++...+.+..++..+.++ +..|+.++..+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~l 129 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333 33444334443
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.47 E-value=15 Score=31.76 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=45.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (701)
|+.||...=+.++-|+-++.+||.. ...+.....+++..-..+....+.|..|++++.-+|..+.-+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKek--------N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555666666666666643 24445556666666666777888888888888888887776543
No 44
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.36 E-value=11 Score=35.89 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~~ 589 (701)
+.++.+|..|.+.|.+|...++.+.+|..+|.+++..++.+++..+
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999999999887776654
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.09 E-value=21 Score=32.50 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
...|+..+.+|..+|..+...+..++....+.-+.=..+++.|...++..+..+..+......++.+...-+..+..
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777655555555566777777777777777777777777666654443333333
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.03 E-value=27 Score=30.67 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
..|=+.++.+.-++++.+....++.....--..+|+++.
T Consensus 56 ~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 56 AQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555667766677666666666666666666666643
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.67 E-value=19 Score=30.38 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
..+....+|++++..++..+...+.+-..+..++.++++-+.-+-.+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34445556777777777777777777777777777766665555444
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.81 E-value=18 Score=31.13 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
++++|......|.++...++..-+.+..++.++++++..-..+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555554444
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.52 E-value=47 Score=37.42 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 005339 568 ASEKAAAEFQLEKE 581 (701)
Q Consensus 568 ~~Er~sL~~qLE~~ 581 (701)
-.|..-+.+-||+.
T Consensus 232 l~ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 232 LTDMPQMRMELERP 245 (562)
T ss_dssp --------------
T ss_pred hhhhhcEEEEEEec
Confidence 46777788888886
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.24 E-value=35 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQ 561 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ 561 (701)
..+|+.++..|+++|.-..
T Consensus 85 r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776543
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.23 E-value=26 Score=32.07 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 005339 317 EQELSVYKSEVTK 329 (701)
Q Consensus 317 QaeL~~EQ~~l~q 329 (701)
|.+|.+.|+.+..
T Consensus 31 q~qLTqAQe~l~~ 43 (121)
T 3mq7_A 31 QQELTEAQKGFQD 43 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 52
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.28 E-value=34 Score=29.86 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
..+|.+|...+..+..+-..+...+..++.+...++.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666555555555555555555443
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.05 E-value=45 Score=35.94 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005339 314 KQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 314 ~~LQaeL~~EQ~~l~q~es 332 (701)
.-||+.|.+.|..+.+.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 3444455555555554443
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.02 E-value=37 Score=29.68 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 508 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREE----HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (701)
Q Consensus 508 r~le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~----~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (701)
..+...+..++.++..+...+..+..+-..+|.+. .......+.....++...+..+..|..+...+..+++.+..
T Consensus 20 ~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 20 NEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444456666666666666654332333221 11112233444444444445555555555555555544444
Q ss_pred HH
Q 005339 584 RL 585 (701)
Q Consensus 584 ~~ 585 (701)
++
T Consensus 100 ~~ 101 (112)
T 1l8d_A 100 EI 101 (112)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.05 E-value=27 Score=29.96 Aligned_cols=46 Identities=4% Similarity=0.042 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (701)
.+....+|+.++..++..+...+.+-..+..++.++++-+.-+-.+
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444446666666666666666666666666666666655554444
No 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.00 E-value=2.6 Score=47.88 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=9.4
Q ss_pred hhhHHHHHhhhhHH
Q 005339 8 AEDLFEVVDRRAKL 21 (701)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (701)
+.+||+.|-++-.|
T Consensus 26 ~~ell~~V~~~LgL 39 (575)
T 2i1j_A 26 GKQLFDQVVKTIGL 39 (575)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 56777777666554
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.83 E-value=37 Score=28.60 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005339 312 RIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es 332 (701)
++..|..++....+.+.+.+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~ 27 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEA 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 58
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.92 E-value=1e+02 Score=34.21 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005339 283 SRLQEYKSENAQLEE 297 (701)
Q Consensus 283 k~~~elksr~aqLEe 297 (701)
+.+++|+..+.+|+.
T Consensus 100 ~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 344444444444444
No 59
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.23 E-value=20 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (701)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (701)
...|+.||.+|--+|.+..........|..-|..+++.+.
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999998888754
No 60
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=70.72 E-value=98 Score=35.28 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=51.4
Q ss_pred hhhHHhhhhcCCCChhhhhhH----HHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHH
Q 005339 233 NKRKQQALKADDPPTKEQDQL----DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA----ERE 304 (701)
Q Consensus 233 ~~~~~~~~~~~ek~~~lqkQL----ee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~e----l~e 304 (701)
++=.++..|+-.++..|+.=| ...+.-|++- .+|..++.++++..+|=..+. .+...|++..+. +..
T Consensus 445 ~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d-~~l~~~~k~~~~~~~~~e~~~----~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 445 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTD-QTLTEKEKEIEVERVKAESAQ----ASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666422 1222223222 346667778877777654443 333334443333 233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 305 LSRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 305 k~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
.-+.++.++.+|...+..++..+-+.++
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~~~~~e~~ 547 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRVQLLKEQE 547 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777665555444
No 61
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.69 E-value=62 Score=29.34 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 562 TQLETMASEKAAAEFQLEKEMNR 584 (701)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~~~~ 584 (701)
+.=|.+..|+..|..||+.+..+
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555666666666655544
No 62
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.73 E-value=32 Score=29.60 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHH
Q 005339 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559 (701)
Q Consensus 516 slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~e 559 (701)
+.|.++..|++.+-. . .-.-.+||.+|..|+++|.-
T Consensus 46 ~~E~d~~~LrkdvD~-------a-~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 46 EAENTLQSFRQDVDN-------A-SLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHTTHHH-------H-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHH-------H-HHHHHHHHHHHHHHHHHHHH
Confidence 355555555555421 1 12357888888888888753
No 63
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=67.12 E-value=1.3e+02 Score=33.79 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 308 SYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (701)
.++.+|..-|++|++.|.+-...+..+...
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~ 35 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAA 35 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555544433
No 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.86 E-value=74 Score=28.75 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 383 TETRMIQALREELASVERRAEEERA 407 (701)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~ 407 (701)
++.+ +++|..+|.-++.-.+.|..
T Consensus 88 LE~~-iesL~eEl~FLKk~heeEl~ 111 (119)
T 3ol1_A 88 LERK-VESLQEEIAFLKKLHEEEIQ 111 (119)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555 56666666666655555443
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.96 E-value=54 Score=28.10 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
...-+++++.+...|+..+..++.+++..+.+-.+++.++...... +..+=++|..+++++.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~-Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL-LDVSLFELSELREGLA 72 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666655555544444 5555566777766654
No 66
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=63.86 E-value=1e+02 Score=29.32 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-
Q 005339 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNREL- 382 (701)
Q Consensus 307 ~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le---~rl~~Le~el~~~K~rleele~E~~rl~e~l~~- 382 (701)
+.|.+|+....+-...-|..+.++..+|..++.....-+..++ +.+..++..+..+..++..++..+..|.=.-=.
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y 102 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGY 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4455555555554444444445555566666665555555665 444555555555555544444443332211111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 383 -TETRMIQALREELASVERRAEEERAAH 409 (701)
Q Consensus 383 -~ekeilqSLE~eLkslq~~le~E~~aH 409 (701)
.+....+-++.++.++++.++.=..+|
T Consensus 103 ak~~a~~~q~~~d~~~~~~~~~kA~~A~ 130 (158)
T 3tul_A 103 AQAEAAVEQAGKEATEAKEALDKATDAT 130 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666677777776665543333
No 67
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=62.69 E-value=69 Score=26.96 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (701)
..+++++.+...|+..+..++.+++..+.+-.+++.++...... +..+=++|..+++++.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~-Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI-LDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666655555544433 5555566766666654
No 68
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.21 E-value=85 Score=27.85 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005339 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (701)
Q Consensus 279 ~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~e 358 (701)
.+|+.........+..|-.-+.+.+.+....+..+..++.+|..+-.+++..-+.|... ..-....++.+...|..+
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~---ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD---ARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666666667777778888899999988888888877766633 223333444444444443
Q ss_pred H
Q 005339 359 A 359 (701)
Q Consensus 359 l 359 (701)
+
T Consensus 92 L 92 (97)
T 2eqb_B 92 L 92 (97)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.75 E-value=43 Score=29.62 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
...|...+.--..++..||.++.++.+
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~ 68 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555544
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.05 E-value=1e+02 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
+++|+++|..|++++......++.+..++.-+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 55666666666665555555555554444433
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.73 E-value=84 Score=26.97 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 005339 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (701)
Q Consensus 419 Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r~ 479 (701)
|...||........++..++..+++=..++..|+.+++.+..++.+++++..++=.++.+.
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544333345677788888888888888888888888888888877776655555443
No 72
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=58.76 E-value=33 Score=30.46 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~ 326 (701)
+.|..|...-..|..+|+. +..-|+.....+.+++..||.. +...+.|.++-.-|+.+|..-...
T Consensus 29 QVQqELs~tfarLc~~Vd~----------t~~eL~~EI~~L~~eI~~LE~i----qs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDM----------TQKHLEEEIARLSKEIDQLEKM----QNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp ------CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777764 5666666777777777777763 445777788888888888765543
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.51 E-value=81 Score=27.07 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
+|...+..++.++..++..+++..-++..++++-.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444433
No 74
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.26 E-value=34 Score=29.15 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 320 L~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (701)
|-..+.++.-.+..+..+..-...+...|..++.++.+-..+++.++.++++++++
T Consensus 21 Ll~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 21 LLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445555554555555555666666777777777777777777777766654
No 75
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=58.13 E-value=82 Score=34.43 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (701)
Q Consensus 428 aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeLq~l 472 (701)
+.++..|...++.+...+.+++.+.++++.+-.+...+.+.++..
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888888898888888888888888888888888888777
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.64 E-value=1e+02 Score=26.96 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (701)
+.....+..++..++.....+..+-.+.+...+...-+ +.....++.|+.+.+
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q-l~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ-QLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444443333 333333344444433
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.92 E-value=97 Score=28.31 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005339 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 313 l~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (701)
|..|..++.+++.++..+..+.. ..+..|.+++..|+.++...+....++..+++.|...+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q-------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQ-------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543222 3345677777777777777777777777777666655554
No 78
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.21 E-value=1e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 005339 358 QAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 358 el~~~K~rleele~E~~rl~e~ 379 (701)
++...+.+-.++..+++++..+
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.03 E-value=2.4e+02 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (701)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (701)
++.-+.++...+.++...+..+......|.-||
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 334445555555555555555555554444443
No 80
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.64 E-value=1.8e+02 Score=33.22 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 414 MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (701)
Q Consensus 414 ~ea~~Re~eLEee~aeLseALaelQrkLeEe~aea~eLeqQls~LE~ElkqLkQeL 469 (701)
.+++.....++..+-..-.+|++.++.+.++..++..++++...|+.-.+.+.+.+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455444556788888999999888888887777765544444433
No 81
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.35 E-value=1.1e+02 Score=25.97 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 286 QEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 286 ~elksr~aqLEell~el~ek----~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (701)
+.+++.++.||..+.+.... ...++..+..|+.+|...+.+....-.+|.
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544443332 333444555566666555555544444444
No 82
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.09 E-value=1.3e+02 Score=26.86 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 350 SSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.+|..-..++..++..++..+.+...+...+
T Consensus 61 ~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 61 QELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444333333
No 83
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=52.07 E-value=1.2e+02 Score=26.55 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 421 VELEHRAAEASMALARIQRIADERTA 446 (701)
Q Consensus 421 ~eLEee~aeLseALaelQrkLeEe~a 446 (701)
..|+.+++.-..-+.+++.++++...
T Consensus 35 ~~l~~e~~~R~~~i~el~akidd~Lk 60 (101)
T 1d7m_A 35 ASLESEGAEREKRLRELEAKLDETLK 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555443
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.44 E-value=1.7e+02 Score=33.03 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhHhhhcchhHHHHH
Q 005339 645 ATRFLWRYPIARIIL 659 (701)
Q Consensus 645 ~g~fLRRyP~aRl~~ 659 (701)
+.-|.+|+|-.=-||
T Consensus 487 ld~~~~rhpd~~~ff 501 (562)
T 3ghg_A 487 LDGFRHRHPDEAAFF 501 (562)
T ss_dssp ---------------
T ss_pred hhhhhhhCcchHhhc
Confidence 566788888754443
No 85
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=50.05 E-value=1.5e+02 Score=26.89 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=5.0
Q ss_pred HHHHHhhhhHHHH
Q 005339 274 LARVCAGLSSRLQ 286 (701)
Q Consensus 274 La~~~~RLrk~~~ 286 (701)
+..++++|..+..
T Consensus 26 i~~L~~~L~~AEe 38 (110)
T 2v4h_A 26 LEDLRQQLQQAEE 38 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 86
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=49.88 E-value=1.6e+02 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=14.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSY 309 (701)
Q Consensus 278 ~~RLrk~~~elksr~aqLEell~el~ek~~~L 309 (701)
..++.....++.+.+..|+..+..++.+.+.+
T Consensus 45 ~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 45 AGRDFKRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444444333333
No 87
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.60 E-value=1.2e+02 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005339 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (701)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele 370 (701)
+.+..|..|+.+-..++..+..++.+.+++.
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544
No 88
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.85 E-value=65 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005339 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (701)
Q Consensus 279 ~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ 324 (701)
.-+++++..+..++++|=..+..+++-.+.|+..+..||.+-...+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3467788888888888888877888878888888888877765543
No 89
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.10 E-value=1.6e+02 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYE 310 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le 310 (701)
-+....+.+.+..||..+++++.+.....
T Consensus 30 ~k~e~~V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 30 NKYRLTTDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666665555555444333
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.34 E-value=57 Score=26.36 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
+...+..|+.+...|+.+...++.+++.++.|+..|.+-+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888888888888877776544
No 91
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.37 E-value=1.4e+02 Score=25.54 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 308 SYEARIKQLEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (701)
.+......|+.++...+......+.+|.
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555544444444333
No 92
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.18 E-value=1.5e+02 Score=25.76 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQEL 320 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL 320 (701)
...+..++..++..+
T Consensus 26 ~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 26 IGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 93
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=45.82 E-value=1.7e+02 Score=29.09 Aligned_cols=57 Identities=7% Similarity=0.041 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (701)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E 405 (701)
..+...++.....+...++++...+..+-..+-.+--..++++...|+.+++++..+
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~ 201 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNA 201 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444555555666677777777666666666666666778888888888777654
No 94
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=44.27 E-value=1.6e+02 Score=25.76 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
|.+++..||..|..++-++.++-. . ..+|+.-+..+..+...-..++.+++.-.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~k--------Q---k~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIK--------Q---KDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777766666543333222 1 12344444444445444444444444433
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.88 E-value=1.4e+02 Score=25.52 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 312 RIKQLEQELSVYKSEVTKVESNLA 335 (701)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ 335 (701)
.+..++.+|...+.+....-.+|.
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 96
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=43.88 E-value=3.9e+02 Score=30.00 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTr~ea~~Re 420 (701)
-.+++..|+..+.++..=++....++.++..-+.+=-..++.-|..|+...+..+.+|+...+-|+.. +..+|....
T Consensus 144 e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~---~~EEAIqe~ 220 (526)
T 3iyk_A 144 DEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG---MQEEAIQEI 220 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHH
Confidence 34677788888888888888888888888877777667777779999999999999999999888764 555555554
Q ss_pred HHH
Q 005339 421 VEL 423 (701)
Q Consensus 421 ~eL 423 (701)
.++
T Consensus 221 ~dm 223 (526)
T 3iyk_A 221 AGM 223 (526)
T ss_pred hcc
Confidence 444
No 97
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.71 E-value=1.5e+02 Score=25.56 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (701)
Q Consensus 255 e~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL 320 (701)
+++--|.+|+-+ +.-+.+.+...+..+-.++..|++-..++..|..++..|+.++
T Consensus 14 eLQSALeaEIqA-----------KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 14 ELQEALEEEVLT-----------RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555543 4444445544555555555444443334444444444444333
No 98
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.25 E-value=1.3e+02 Score=26.36 Aligned_cols=22 Identities=9% Similarity=-0.222 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005339 343 SEIETLVSSIDALKKQAALSEG 364 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~ 364 (701)
+.+..|+....+|+..+..++.
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELED 33 (95)
T ss_dssp ------CCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.16 E-value=3.4e+02 Score=29.11 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 421 VELEHRAAEASMALARIQRIADERTAKA 448 (701)
Q Consensus 421 ~eLEee~aeLseALaelQrkLeEe~aea 448 (701)
..+.++++-+..-+.++...+.++.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3333333333333333333333333333
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.93 E-value=3.6e+02 Score=29.29 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 005339 360 ALSEGNLASLQMNMESIMRNREL 382 (701)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~ 382 (701)
..++.+++++.+.+..+.+...+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhH
Confidence 44555666666666665555555
No 101
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.58 E-value=2.9e+02 Score=30.17 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (701)
Q Consensus 281 Lrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQae 319 (701)
|-+.....+..+..||..|+...........-+..++.-
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 444555555666666666666655555555544444443
No 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.18 E-value=1.7e+02 Score=32.78 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKN-------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~-------~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
.+...++.++...|..+......+......++ ...+.|..+...+..+++.++..+.++++++..+.-
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443211111 244455555555555555555555555555544443
No 103
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=40.48 E-value=2e+02 Score=25.54 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005339 316 LEQELSVYKSEVTKVE 331 (701)
Q Consensus 316 LQaeL~~EQ~~l~q~e 331 (701)
|+.+|.+.|+.+...+
T Consensus 23 Lq~qLT~Aq~~l~~~e 38 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAE 38 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544444
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.38 E-value=79 Score=25.13 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
+...+..|+.+...+..+...++..+..+..++..|..-
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888888888888887776654
No 105
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=39.86 E-value=1.1e+02 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
++..+..|+.+|...+.+....
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444433
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.37 E-value=72 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLAS 368 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rlee 368 (701)
+..|..|+.+|...+.++..++..+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444444
No 107
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.32 E-value=1.6e+02 Score=25.07 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHhhhhh
Q 005339 251 DQLDEAQGLLKTTIST 266 (701)
Q Consensus 251 kQLee~n~~LrsE~e~ 266 (701)
..+-|.....++|.++
T Consensus 14 rrl~E~~~q~qaEl~s 29 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNA 29 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3444555555555554
No 108
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.05 E-value=53 Score=27.85 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 279 ~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
..|..++.++..+++-+|+.+.++++....-+..|..|+..|.....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777776666666666555555555555544433
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.31 E-value=4.3e+02 Score=28.65 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005339 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (701)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eL 395 (701)
|++.+.-+|.++..--..++.|+-.+.+.-.+ |+-||..|
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k-iqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVD-MKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34444455555555444555555555555555 55555555
No 110
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.92 E-value=1.1e+02 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005339 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (701)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (701)
+.+|+.+...++....+++.+++-++.|+.-|-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4577777777777788888888888888765543
No 111
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.82 E-value=1.6e+02 Score=23.17 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
.|..++.+|+.++.+.+..+..+..+..+-.-.-.|++.|+|.
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445566666666666666666666666666666666666663
No 112
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.19 E-value=2.4e+02 Score=24.77 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 305 LSRSYEARIKQLEQELSVYKSEVTKVE 331 (701)
Q Consensus 305 k~~~Le~rl~~LQaeL~~EQ~~l~q~e 331 (701)
+.+.|+.+|..|+.++.++..++.-+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888877766655444
No 113
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.07 E-value=1.2e+02 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~ 374 (701)
+..+|......+..++.++......+.+++.+++
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 114
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.39 E-value=1.5e+02 Score=23.51 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
+...+.+|+.++..|+.+...++..+..+..++..|...
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888888888887666543
No 115
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.10 E-value=2.3e+02 Score=24.30 Aligned_cols=57 Identities=32% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005339 292 NAQLEELLV---AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (701)
Q Consensus 292 ~aqLEell~---el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl 352 (701)
....|.++. .++-+...|+++..+-+..|...++++..++. +|..++++|.-|..++
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~----qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE----QVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHhhHHHHHHHHHHH
Confidence 344445444 34445677777777777777776666665554 4445566666665543
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.00 E-value=1.3e+02 Score=26.83 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 005339 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (701)
Q Consensus 447 ea~eLeqQls~LE~ElkqLkQeLq~lE~e~~r 478 (701)
.+..+++++..|+.+...|++++..++.++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999988
No 117
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.89 E-value=43 Score=34.42 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhhhhc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 519 AEVQKMRVEMAAMKRDAEHY-SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 519 ~elqkLr~e~~~Lk~qle~~-~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
.++..|+.++..|.+++.+. -.+...-.+.++++|..++...+.+.+.|..+...+.-+|+++...++..
T Consensus 24 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 24 AELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555544222 00111112778999999999999999999999999999999887776654
No 118
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.52 E-value=2.4e+02 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005339 347 TLVSSIDALKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~r 375 (701)
.|..++..++.+++.+..++..++.++..
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 119
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.40 E-value=1.4e+02 Score=23.99 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
+...+.+|+.+...|+.+-..++..+..++.+...|..-+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777776665543
No 120
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.79 E-value=1.6e+02 Score=32.88 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
|..+...++.++...|..+......+... .+.....+.|..+...+..+++.++..+.++++++..+.-.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555666666666666666555432 11222344566666666666666666666666666555444
No 121
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.61 E-value=2.8e+02 Score=24.70 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (701)
Q Consensus 337 aLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (701)
.|..+..++..|...+..+...-..+..++..++.+++.+.
T Consensus 62 eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 62 ELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544
No 122
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.39 E-value=77 Score=29.46 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005339 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (701)
Q Consensus 300 ~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (701)
..++++|+.+..++..++.++...+.. ..-......-+.++|+..+..=.......|.+++.++.--..|-++
T Consensus 26 ~~Leek~~~~e~~~~~~~~Elee~kqq-------~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~Lfqe 98 (130)
T 3cl3_D 26 QALEGRARAASEQARQLESEREALQQQ-------HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE 98 (130)
T ss_dssp -------------------------CT-------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777776666666666442111 1111111222333444444433334444556666666555555555
Q ss_pred hhh
Q 005339 380 REL 382 (701)
Q Consensus 380 l~~ 382 (701)
.+.
T Consensus 99 Yd~ 101 (130)
T 3cl3_D 99 YDN 101 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 123
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.17 E-value=2.4e+02 Score=23.90 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 005339 399 ERRAEEERAA 408 (701)
Q Consensus 399 q~~le~E~~a 408 (701)
+-+++.|+..
T Consensus 65 K~~Le~EIat 74 (86)
T 1x8y_A 65 KLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 3333344333
No 124
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.71 E-value=1.5e+02 Score=32.08 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (701)
|..+...++.++...|..+......+.. +.....+.|..++..+..+++.++..+.++++++..+.
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666655555655554442 22233445555555555555555555555555554443
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.32 E-value=1.7e+02 Score=32.24 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
|..+...++.++...|..+......+... .+.....+.|..+...+..+++.++..+.++++++..+.-.+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455556666666666666666555432 122233445555566666666666666666666655554443
No 126
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.04 E-value=1e+02 Score=23.44 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 298 LLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 298 ll~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
+..+++++...|+.|+..|+.-|...++
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 127
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.39 E-value=1e+02 Score=28.57 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005339 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (701)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (701)
+.+|-.++.....++++++.+..+++++.-.++.. +..++.++..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~-~~~~~~Elee 48 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQ-ARQLESEREA 48 (130)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence 35566778888888888888888888876666655 4444444433
No 128
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.32 E-value=2.7e+02 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 546 LEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (701)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (701)
||.++..-+++|...|.+++.=.+|..-|.
T Consensus 45 yEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 45 YEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444444444444444333
No 129
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.84 E-value=2.1e+02 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNM 373 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (701)
.|++|+.++..-+.+|.....++.+++...
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666667777776666666666653
No 130
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.44 E-value=1e+02 Score=31.70 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 005339 355 LKKQAALSEGNLASLQMNMES 375 (701)
Q Consensus 355 Le~el~~~K~rleele~E~~r 375 (701)
++.++...+.++..++.+++.
T Consensus 127 a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 127 AKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 131
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.24 E-value=1.2e+02 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (701)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~~ 588 (701)
+-.|++.++.+|...+..++....|++|+..+|+.....+-+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999877665443
No 132
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.78 E-value=7e+02 Score=27.78 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHhhhhh---hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA---EHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (701)
Q Consensus 494 k~lkeEL~~lRq~qr~le~kL~slE~elqkLr~e~~~Lk~ql---e~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~E 570 (701)
+.++.-|+.+++.+.++...-.+.-.-+..+...|+.-..+. +.-+.+-..+|+.|+..|.+.+...=+.|..|..-
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~ 140 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNS 140 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 005339 571 KAAAEFQLEKEMNRLQ 586 (701)
Q Consensus 571 r~sL~~qLE~~~~~~~ 586 (701)
+..+...+++++...+
T Consensus 141 l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 141 IQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 133
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.82 E-value=1e+02 Score=30.41 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (701)
.++++++...-.-+++++.|+..|.+.+..+..+ +.+|+.+|.++++..
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~e-i~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATE-IKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
No 134
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.72 E-value=2.7e+02 Score=22.66 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (701)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (701)
.-|..++.+|+.....-...+.....|...|..+++.+...+++
T Consensus 31 ~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 31 EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666555566666666666666666666655543
No 135
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.66 E-value=2e+02 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 005339 517 LEAEVQKMRVEM 528 (701)
Q Consensus 517 lE~elqkLr~e~ 528 (701)
+|.+++.|.+.+
T Consensus 25 leselqalekkl 36 (48)
T 1g6u_A 25 LESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 136
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=25.52 E-value=4.7e+02 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=16.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 337 aLsak~~eie~Le~rl~~Le~el~~~K~rle 367 (701)
+..+-...+..|+.|+...+.++.-++.++.
T Consensus 99 RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~ 129 (242)
T 3c9i_A 99 RITANTKAITALNVRVTTAEGEIASLQTNVS 129 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhheeecccccchhhhhhhh
Confidence 3334444555566655555555555554443
No 137
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.43 E-value=7.5e+02 Score=27.69 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005339 308 SYEARIKQLEQELSVYKSEVTKV 330 (701)
Q Consensus 308 ~Le~rl~~LQaeL~~EQ~~l~q~ 330 (701)
.++.++.+.|++-...+.++..-
T Consensus 13 ~yq~elarvqkana~aka~Ye~~ 35 (497)
T 3iox_A 13 AYQTELARVQKANADAKAAYEAA 35 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 138
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=25.34 E-value=2.3e+02 Score=21.81 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 306 SRSYEARIKQLEQELSVYKSEVTKVES 332 (701)
Q Consensus 306 ~~~Le~rl~~LQaeL~~EQ~~l~q~es 332 (701)
...|+..+..||.-+++.-.++...+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 139
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.20 E-value=3.1e+02 Score=23.16 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (701)
Q Consensus 510 le~kL~slE~elqkLr~e~~~Lk~qle~~~~~~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er 571 (701)
++.+|..+|.++..|..+|.. + .-| ...+ .++..|..++...+..++.+...=
T Consensus 27 le~~Ie~LE~~i~~le~~lad---p-~~y----~~d~-~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVAD---A-SFF----SQPH-EQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---T-TGG----GSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---c-ccc----cCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555521 0 001 1222 356777777777777777666544
No 140
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.15 E-value=2.3e+02 Score=22.23 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005339 291 ENAQLEE 297 (701)
Q Consensus 291 r~aqLEe 297 (701)
+|..|.+
T Consensus 24 rN~rL~~ 30 (51)
T 3m91_A 24 RNSKLME 30 (51)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 141
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=23.97 E-value=23 Score=30.87 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005339 657 IILLFYLVFVHLFLM 671 (701)
Q Consensus 657 l~~l~Y~vlLHLWV~ 671 (701)
|+|++.+++||+|-=
T Consensus 69 l~FIa~VilLHI~gK 83 (87)
T 2ww9_C 69 VGFIFSVIALHLLTK 83 (87)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh
Confidence 567778889999853
No 142
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.72 E-value=3.1e+02 Score=23.87 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005339 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (701)
Q Consensus 276 ~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~L 355 (701)
++..+.+++++.++..+..+|..+.-+..-.. + . .......+...-..|. .|.+++..+
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~-~-----T----pq~L~~~l~~~h~~Fi-----------aLAa~l~~l 70 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQANNSH-I-----T----PQDLSMAMQKIYQTFV-----------ALAAQLQSI 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT-S-----C----HHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-C-----C----HHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 46788999999999999999997665432100 0 0 0111222333444455 677777777
Q ss_pred HHHHHHHHhHHHHH
Q 005339 356 KKQAALSEGNLASL 369 (701)
Q Consensus 356 e~el~~~K~rleel 369 (701)
..+++.+|...-.+
T Consensus 71 H~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 71 HENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777655443
No 143
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.35 E-value=1.7e+02 Score=20.53 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=11.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 005339 378 RNRELTETRMIQALREELASVERR 401 (701)
Q Consensus 378 e~l~~~ekeilqSLE~eLkslq~~ 401 (701)
+++..+-++ +.+|.+++..++++
T Consensus 9 qeiaalkke-iaalkfeiaalkqg 31 (33)
T 4dzn_A 9 QEIAALKKE-IAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHcc
Confidence 333333444 55555555555554
No 144
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=23.23 E-value=18 Score=32.14 Aligned_cols=14 Identities=7% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q 005339 657 IILLFYLVFVHLFL 670 (701)
Q Consensus 657 l~~l~Y~vlLHLWV 670 (701)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 56777788888874
No 145
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.96 E-value=3.7e+02 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005339 341 KNSEIETLVSSIDALKKQAALSEGNLA 367 (701)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rle 367 (701)
.+.++..|+.....++..+..++.+..
T Consensus 61 L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 61 LRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444333
No 146
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.62 E-value=3.5e+02 Score=22.77 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (701)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (701)
+.+|+.|.+.+.-|....|.|-.|.-++...=-.+..++
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 457888888888888888888888887776655555444
No 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.15 E-value=8.3e+02 Score=27.04 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005339 284 RLQEYKSENAQLEELLVAERE 304 (701)
Q Consensus 284 ~~~elksr~aqLEell~el~e 304 (701)
...-.++.+..|+..+..+..
T Consensus 94 ~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 94 QEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHHHhh
Confidence 334455555555555444433
No 148
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.00 E-value=3.2e+02 Score=24.17 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 341 KNSEIETLVSSI---DALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 341 k~~eie~Le~rl---~~Le~el~~~K~rleele~E~~rl 376 (701)
++++|..|..++ +.++..++.++.+.--++.+++..
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444332 333344555555555555555443
No 149
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=21.67 E-value=63 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 005339 661 FYLVFVHLFLMYLLHR 676 (701)
Q Consensus 661 ~Y~vlLHLWV~~VL~~ 676 (701)
+|+.+|-++|+.|||+
T Consensus 17 Ly~GLLlifvlavlFs 32 (37)
T 3arc_L 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5888888899999885
No 150
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.64 E-value=2.8e+02 Score=30.42 Aligned_cols=12 Identities=25% Similarity=0.105 Sum_probs=7.7
Q ss_pred hHHHHHHHhHHh
Q 005339 628 SVQLQKAAKLLD 639 (701)
Q Consensus 628 ~rrvk~Aa~~lD 639 (701)
++.|...+..+|
T Consensus 162 H~~lg~~l~l~d 173 (455)
T 2dq0_A 162 HVDLLEILGGAD 173 (455)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHhcCCcEE
Confidence 346666667776
No 151
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.64 E-value=3.3e+02 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 336 eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
.+|++-++-|+.|..-...+..++..+..++.+++.|+-.|
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 45555666666666666666667777777777777776554
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.57 E-value=2.2e+02 Score=30.75 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005339 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (701)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (701)
.|..|+.++..++++...++..+++++.+++.+.+.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444433
No 153
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.17 E-value=1.8e+02 Score=22.80 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005339 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (701)
Q Consensus 282 rk~~~elksr~aqLEell~el~ek~~~Le~rl~~LQaeL~~ 322 (701)
..+..+++.++.+|-..+..+-+.++.-.++|..|..++.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555543
No 154
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.01 E-value=4.5e+02 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005339 351 SIDALKKQAALSEGNLASLQMNMESIM 377 (701)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~ 377 (701)
+.....+++...|.....++.++..++
T Consensus 52 e~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 52 QYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444433333
No 155
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.48 E-value=2.9e+02 Score=23.97 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005339 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV 300 (701)
Q Consensus 248 ~lqkQLee~n~~LrsE~e~l~~ke~qLa~~~~RLrk~~~elksr~aqLEell~ 300 (701)
..|.++++....||.++. |+=.+..=...|++.....++....++-.|+
T Consensus 18 ~~q~~le~~r~~ir~eI~----KElKiKeGaENL~katt~~kk~~~~V~~eL~ 66 (86)
T 1cxz_B 18 GVQQQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLLR 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445667777777777764 4444555566666666664444444444333
No 156
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.14 E-value=3.2e+02 Score=30.48 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=17.5
Q ss_pred hHHHHHHHhHHhhh-hHh---HhHhhhcchhHHHHH
Q 005339 628 SVQLQKAAKLLDSG-AVR---ATRFLWRYPIARIIL 659 (701)
Q Consensus 628 ~rrvk~Aa~~lDs~-sir---~g~fLRRyP~aRl~~ 659 (701)
.+.|...+..+|-- +.. .|.+++.-..+||+-
T Consensus 154 H~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~ 189 (485)
T 3qne_A 154 HHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQ 189 (485)
T ss_dssp HHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHH
T ss_pred HHHHHhhcCCcccccccccccceeEEEecHHHHHHH
Confidence 35677767777631 112 244556566677654
No 157
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.01 E-value=1.7e+02 Score=31.73 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005339 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (701)
Q Consensus 293 aqLEell~el~ek~~~Le~rl~~LQaeL~~EQ~ 325 (701)
..|+..+.+++++...|+..+..++.++....+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444443
Done!