Query 005339
Match_columns 701
No_of_seqs 170 out of 196
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 22:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 59.6 27 0.0019 28.6 9.7 65 309-376 33-97 (110)
2 d1seta1 a.2.7.1 (A:1-110) Sery 55.3 32 0.0023 28.2 9.4 29 545-573 68-96 (110)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.5 97 0.0071 25.5 13.0 19 353-371 105-123 (133)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 30.4 1.3E+02 0.0093 24.2 12.9 39 342-380 64-102 (107)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 29.5 19 0.0014 23.3 2.7 22 658-679 6-27 (30)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 28.3 1.1E+02 0.0078 22.6 7.9 47 356-402 3-62 (66)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 25.3 1.6E+02 0.011 23.6 10.8 30 343-372 72-101 (107)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 20.9 31 0.0023 23.5 2.6 16 661-676 17-32 (37)
9 d1qvra2 c.37.1.20 (A:149-535) 19.9 3.2E+02 0.023 26.6 11.7 113 274-401 237-362 (387)
10 d2gfna2 a.121.1.1 (A:81-199) P 16.7 22 0.0016 29.5 1.2 13 650-662 20-32 (119)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.57 E-value=27 Score=28.65 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005339 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (701)
Q Consensus 309 Le~rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (701)
|..+...++.++...|..+......+.. .+.+....|..+...+..++..+...+.+++.++..+
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~i~k---~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666665554442 1334444555555555555555555555555554443
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=55.28 E-value=32 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005339 545 ELEKRYRELTDLLYYKQTQLETMASEKAA 573 (701)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~s 573 (701)
.+..+++.|.+++...+..+..+..+.+.
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444444444444433
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.54 E-value=97 Score=25.54 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 005339 353 DALKKQAALSEGNLASLQM 371 (701)
Q Consensus 353 ~~Le~el~~~K~rleele~ 371 (701)
..+..++...+..+..++.
T Consensus 105 ~~l~~~~~~~~~~i~~l~~ 123 (133)
T d1fxkc_ 105 QKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.41 E-value=1.3e+02 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005339 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (701)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (701)
.+.+.+|..++..++.+++.+...+..++.++..++.++
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666665555555444
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.45 E-value=19 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q 005339 658 ILLFYLVFVHLFLMYLLHRLQE 679 (701)
Q Consensus 658 ~~l~Y~vlLHLWV~~VL~~~~~ 679 (701)
.+++|.+++-|+.|.|+|+-.|
T Consensus 6 yv~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHHHhcCCC
Confidence 4667777888888888887655
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.27 E-value=1.1e+02 Score=22.64 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHH
Q 005339 356 KKQAALSEGNLASLQMNMESIMRNREL-------------TETRMIQALREELASVERRA 402 (701)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~-------------~ekeilqSLE~eLkslq~~l 402 (701)
+.++.++...++.++.+..++...++. .++..+..+..++..++..+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777665 24444555555555555444
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.32 E-value=1.6e+02 Score=23.58 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005339 343 SEIETLVSSIDALKKQAALSEGNLASLQMN 372 (701)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E 372 (701)
..++.|..++..++..+..+..++.+++..
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.87 E-value=31 Score=23.51 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 005339 661 FYLVFVHLFLMYLLHR 676 (701)
Q Consensus 661 ~Y~vlLHLWV~~VL~~ 676 (701)
+|..+|-++|+.|||+
T Consensus 17 Ly~GlLlifvl~vLFs 32 (37)
T d2axtl1 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777888888888885
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=19.90 E-value=3.2e+02 Score=26.64 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005339 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA--------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI 345 (701)
Q Consensus 274 La~~~~RLrk~~~elksr~aqLEell~el~ek~~~Le~--------rl~~LQaeL~~EQ~~l~q~es~~~eaLsak~~ei 345 (701)
|-..|++.+-.....-..+..++..+..+.-....|.. ++..++.++...+..+..+.....
T Consensus 237 ld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~---------- 306 (387)
T d1qvra2 237 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWE---------- 306 (387)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHH
Q 005339 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-----TETRMIQALREELASVERR 401 (701)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-----~ekeilqSLE~eLkslq~~ 401 (701)
....+-.++..++..++.+..+++.++..-+. +....+-.++.++..+...
T Consensus 307 -----~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 307 -----REREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 10
>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=16.69 E-value=22 Score=29.47 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=0.0
Q ss_pred hcchhHHHHHHHH
Q 005339 650 WRYPIARIILLFY 662 (701)
Q Consensus 650 RRyP~aRl~~l~Y 662 (701)
||..|.|+|+|||
T Consensus 20 rrlamtrvflffy 32 (119)
T d2gfna2 20 RRLAMTRVFLFFY 32 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Done!