BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005340
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 312/703 (44%), Positives = 434/703 (61%), Gaps = 39/703 (5%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 60
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 120
Query: 115 IEYEP-PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTL 173
IEY GP +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +
Sbjct: 121 IEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRM 176
Query: 174 VQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAG--VRDGLSSD 231
VQVHELG G I K+YVF+G+KD+S QL E L P T G V+ S+
Sbjct: 177 VQVHELGCEG--ISKSYVFRGTKDLSAKQLQEMLGL---SKVPVTQATRGPQVQQPPPSN 231
Query: 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGA 291
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GA
Sbjct: 232 ---RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGA 288
Query: 292 RILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHV 351
RI+ F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV
Sbjct: 289 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 348
Query: 352 LDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHS---GDYDLGLSS 408
+D++ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF G + +G
Sbjct: 349 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGF-- 406
Query: 409 NGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFE 468
G EI S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE
Sbjct: 407 GGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFE 466
Query: 469 IVKKE---IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAG 525
+V + IP + QF+T YQH+ GQ R+RVTT++R W +Q++ A
Sbjct: 467 VVNQHNAPIPQG------GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAAS 520
Query: 526 FDQEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXX 585
FDQEAAA++MARL ++ E E D +RWLD+ LI +C +FG+Y KD
Sbjct: 521 FDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSL 580
Query: 586 XXQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXX 645
QFMFHLRRS F+QVFNNSPDE++Y+R R+++T S++MIQP L +YSF PEP
Sbjct: 581 YPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVL 640
Query: 646 XXXXXXXXXXXXXXXSYFTVVIFHGATIAQWRKAGYHNQPEHQ 688
++F ++I+HG TIAQWRK+GY + PE++
Sbjct: 641 LDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYE 683
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/701 (44%), Positives = 433/701 (61%), Gaps = 35/701 (4%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 56
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 57 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 116
Query: 115 IEYEP-PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTL 173
IEY GP +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +
Sbjct: 117 IEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRM 172
Query: 174 VQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTI 233
VQVHELG G I K+YVF+G+KD+S QL E L K P V+ S+
Sbjct: 173 VQVHELGCEG--ISKSYVFRGTKDLSAKQLQEMLGL-SKVPLTQATRGPQVQQPPPSN-- 227
Query: 234 ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARI 293
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GARI
Sbjct: 228 -RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARI 286
Query: 294 LAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLD 353
+ F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV+D
Sbjct: 287 MMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVID 346
Query: 354 LFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHS---GDYDLGLSSNG 410
++ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF G + +G G
Sbjct: 347 IYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGF--GG 404
Query: 411 IFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIV 470
EI S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE+V
Sbjct: 405 TLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVV 464
Query: 471 KKE---IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFD 527
+ IP + QF+T YQH+ GQ R+RVTT++R W +Q++ A FD
Sbjct: 465 NQHNAPIPQG------GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFD 518
Query: 528 QEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXXXX 587
QEAAA++MARL ++ E E D +RWLD+ LI +C +FG+Y KD
Sbjct: 519 QEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYP 578
Query: 588 QFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXXXX 647
QFMFHLRRS F+QVFNNSPDE++Y+R R+++T S++MIQP L +YSF PEP
Sbjct: 579 QFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLD 638
Query: 648 XXXXXXXXXXXXXSYFTVVIFHGATIAQWRKAGYHNQPEHQ 688
++F ++I+HG TIAQWRK+GY + PE++
Sbjct: 639 SSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYE 679
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 610 bits (1573), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/703 (44%), Positives = 433/703 (61%), Gaps = 39/703 (5%)
Query: 1 MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
MT +++ E +DGVR WNV P ++ EA+ VVPV+A++TP+K P +P + Y
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 56
Query: 57 APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
P+ C TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 57 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 116
Query: 115 IEYEP-PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTL 173
IEY GP +P +F++VVDTC+ +E++ LK ++ ++ LLP +LVGLITFG +
Sbjct: 117 IEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRM 172
Query: 174 VQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAG--VRDGLSSD 231
VQVHELG G I K+YVF+G+ D+S QL E L P T G V+ S+
Sbjct: 173 VQVHELGCEG--ISKSYVFRGTGDLSAKQLQEMLGL---SKVPLTQATRGPQVQQPPPSN 227
Query: 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGA 291
RFL P + L +L ELQ+DPWPVP +R R +G ALSIA LL P +GA
Sbjct: 228 ---RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGA 284
Query: 292 RILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHV 351
RI+ F+GGP+T+GP +V L PIRS D+DKD+A + K K ++AL+ + GHV
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 344
Query: 352 LDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHS---GDYDLGLSS 408
+D++ACALDQ G+ E+K TGG +V+ DSF ++FK + +RVF G + +G
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGF-- 402
Query: 409 NGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFE 468
G EI S++IK+ G IGPC SL KGP S+ +G G T WK+CGL T+L + FE
Sbjct: 403 GGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFE 462
Query: 469 IVKKE---IPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAG 525
+V + IP + QF+T YQH+ GQ R+RVTT++R W +Q++ A
Sbjct: 463 VVNQHNAPIPQG------GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAAS 516
Query: 526 FDQEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXX 585
FDQEAAA++MARL ++ E E D +RWLD+ LI +C +FG+Y KD
Sbjct: 517 FDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSL 576
Query: 586 XXQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXX 645
QFMFHLRRS F+QVFNNSPDE++Y+R R+++T S++MIQP L +YSF PEP
Sbjct: 577 YPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVL 636
Query: 646 XXXXXXXXXXXXXXXSYFTVVIFHGATIAQWRKAGYHNQPEHQ 688
++F ++I+HG TIAQWRK+GY + PE++
Sbjct: 637 LDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYE 679
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/699 (39%), Positives = 403/699 (57%), Gaps = 31/699 (4%)
Query: 5 MDLEAQD---GVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRC 61
MD E + GVR WNV P T+ +A++ VVPV +YTP+K + + + + PY P+ C
Sbjct: 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVC 56
Query: 62 RT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEP 119
C+SILNP+ ++D W CP C RNH PP Y +++ +N+P EL Q TTIEY
Sbjct: 57 SGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYIT 114
Query: 120 PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHEL 179
P +VPP+F FVVD E + LK ++ ++ LLP N+L+GLIT+G +VQ+H+L
Sbjct: 115 NKP---VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 171
Query: 180 GGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDT---IARF 236
+ I + VF+G ++ + L E L +KP G + + + ++ T + RF
Sbjct: 172 SS--ETIDRCNVFRGDREYQLEALTEMLTG--QKPTGPGGAASHLPNAMNKVTPFSLNRF 227
Query: 237 LVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAF 296
+P EF LN +LE L D W VP R R TG+AL+IA+ LL C ARI+ F
Sbjct: 228 FLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILF 287
Query: 297 VGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFA 356
GP T P IV+ L +P+RSH D+D D A HY KA KFY+ +++++ GH +D+FA
Sbjct: 288 ASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFA 347
Query: 357 CALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYD-LGLSSNGIFEIN 415
DQ+G++E+K + TGG+++L+D+F A+FK S R+F + L ++ NG +
Sbjct: 348 GCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVK 407
Query: 416 CSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEI 474
SKD+KVQG+IG ++++K S++ +G G TS WKM L S + FEI
Sbjct: 408 TSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAA 467
Query: 475 PDATLQSTNNQ------FYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQ 528
+ S Y QF+T YQH+ G R+RVTT++ + + P + A FDQ
Sbjct: 468 NSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL--PFGTPAIAASFDQ 525
Query: 529 EAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXXXXQ 588
EAAAV+MAR+ K E + D IRWLD+ LI +C ++ DY KD Q
Sbjct: 526 EAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQ 585
Query: 589 FMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXXXXX 648
F ++LRRSQF+ VFNNSPDETA++R I RE+ TNS++MIQP+L S+S P+P
Sbjct: 586 FTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDS 645
Query: 649 XXXXXXXXXXXXSYFTVVIFHGATIAQWRKAGYHNQPEH 687
++F ++I+HG IAQWRKAGY + P++
Sbjct: 646 ISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQY 684
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/699 (39%), Positives = 404/699 (57%), Gaps = 28/699 (4%)
Query: 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRC 61
++F E +GVR WNV P T+ +A++ VVPV +YTP+K + + + + PY P+ C
Sbjct: 5 SDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVC 60
Query: 62 RT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEP 119
C+SILNP+ ++D W CP C RNH PP Y +++ +N+P EL Q TTIEY
Sbjct: 61 SGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYIT 118
Query: 120 PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHEL 179
P +VPP+F FVVD E + LK ++ ++ LLP N+L+GLIT+G +VQ+H+L
Sbjct: 119 NKP---VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 175
Query: 180 GGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDT---IARF 236
+ I + VF+G ++ + L E L +KP G + + + ++ T + RF
Sbjct: 176 SS--ETIDRCNVFRGDREYQLEALTEMLTG--QKPTGPGGAASHLPNAMNKVTPFSLNRF 231
Query: 237 LVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAF 296
+P EF LN +LE L D W VP R R TG+AL+IA+ LL C ARI+ F
Sbjct: 232 FLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILF 291
Query: 297 VGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFA 356
GP T P IV+ L +P+RSH D+D D A HY KA KFY+ +++++ GH +D+FA
Sbjct: 292 ASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFA 351
Query: 357 CALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYD-LGLSSNGIFEIN 415
DQ+G++E+K + TGG+++L+D+F A+FK S R+F + L ++ NG +
Sbjct: 352 GCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVK 411
Query: 416 CSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEI 474
SKD+KVQG+IG ++++K S++ +G G TS WKM L S + FEI
Sbjct: 412 TSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAA 471
Query: 475 PDATLQSTNNQ------FYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQ 528
+ S Y QF+T YQH+ G R+RVTT++ + + P + A FDQ
Sbjct: 472 NSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL--PFGTPAIAASFDQ 529
Query: 529 EAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDXXXXXXXXXXXXXXXQ 588
EAAAV+MAR+ K E + D IRWLD+ LI +C ++ DY KD Q
Sbjct: 530 EAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQ 589
Query: 589 FMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQPSLISYSFHSGPEPXXXXX 648
F ++LRRSQF+ VFNNSPDETA++R I RE+ TNS++MIQP+L S+S P+P
Sbjct: 590 FTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDS 649
Query: 649 XXXXXXXXXXXXSYFTVVIFHGATIAQWRKAGYHNQPEH 687
++F ++I+HG IAQWRKAGY + P++
Sbjct: 650 ISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQY 688
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Length = 59
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 63 TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPA 106
TCR++LNP VD+ AK+W C FC+QRN FPP YA I++ N PA
Sbjct: 16 TCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Mutant V69a
Length = 59
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 58 PLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPA 106
P+ C TCR+ LNP VD+ AK+W C FC+QRN FPP YA I++ N PA
Sbjct: 9 PVLCSRTTCRAALNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 127/542 (23%), Positives = 204/542 (37%), Gaps = 95/542 (17%)
Query: 14 RMPWNVIPGTKQEASNCVVPVSAIYTPIK---AFPVNNNSMPILPYAPLRCRTCRSILNP 70
R IP T+ + +P+ + P K PV +S + RCR+CR+ +NP
Sbjct: 47 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIV------RCRSCRTYINP 100
Query: 71 F-SIVDFAAKIWICPFCFQRNHFPPH--YASITDDNLPAELFP--QYTTIEYEPPGPGE- 124
F S +D + W C C++ N P Y +T P Q TIE+ P
Sbjct: 101 FVSFLD--QRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYML 158
Query: 125 KSSVPPVFMFVVDTCIIEEEMSFLKS---ALSQAIDLLPDNSL--VGLITFGTLVQVHEL 179
+ PPV++FV D E +L S +L +DLLP N+ +G ITF + + + L
Sbjct: 159 RPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGL 218
Query: 180 G-GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLV 238
Q P+ + +DV FI P+ ++ + + S + + L+
Sbjct: 219 QESLSQ--PQMLIVSDIEDV-----------FIPMPE---NLLVNLNE---SKELVQDLL 259
Query: 239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
FT LE + G AL A L+ +G R+ F
Sbjct: 260 KTLPQMFT--KTLE--------------TQSALGPALQAAFKLMSP----TGGRMSVFQT 299
Query: 299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
T G A+ K EP +H+ KD H + FY L+ Q +DLF +
Sbjct: 300 QLPTLGVGAL--KPREEP--NHRSSAKDI--HMTPSTDFYKKLALDCSGQQVAVDLFLLS 353
Query: 359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDL--GLSSNGIFEINC 416
+A L + G V S+ H V+++ L + + I C
Sbjct: 354 GQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRC 413
Query: 417 SKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPD 476
+K + + G + L S V A +M V++ + D
Sbjct: 414 TKGLSIHTFHG--NFFVRSTDLLSLPNVNPDAGYAVQMS--------------VEESLTD 457
Query: 477 ATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMA 536
L S FQ Y + G+ R+RV TL V+ ++ D+ G D +A + ++A
Sbjct: 458 TQLVS------FQSALLYTSSKGERRIRVHTLCLPVVS---TLNDVFLGADVQAISGLLA 508
Query: 537 RL 538
+
Sbjct: 509 NM 510
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 131/639 (20%), Positives = 227/639 (35%), Gaps = 92/639 (14%)
Query: 20 IPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA---PLRCRTCRSILNPFSIVDF 76
IP T A VP++A+ P+ P S ++ + PLRC C++ + PF
Sbjct: 53 IPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIE 112
Query: 77 AAKIWICPFCFQRNHFPPHYASITD---DNLPAELFPQYTTIEYEPPG-----PGEKSSV 128
+ + C FC N PP Y D + A P+ + YE K
Sbjct: 113 GGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS 172
Query: 129 PPVFMFVVD---TCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQI 185
PP F+F++D I + L L +D LP E G
Sbjct: 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP----------------REGGAEESA 216
Query: 186 IPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEF 245
I + V+ +++L N +P V++ V D + + FLV +
Sbjct: 217 IRVGF-------VTYNKVLHFYNVKSSLAQPQMMVVSDVAD-MFVPLLDGFLVNVNESRA 268
Query: 246 TLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGP 305
+ S+L+++ + + D R T + A +G L P E P
Sbjct: 269 VITSLLDQIPE----MFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAP 324
Query: 306 AAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVA 365
+ +++ + I + K+ + Y L+K+ V QG +DLF V VA
Sbjct: 325 GKLKNRDDRKLINTDKE-----KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVA 379
Query: 366 ELKVAVEKTGGLVVLSDSF----GHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIK 421
L V + TGG V SF F +RR D + + + + S I+
Sbjct: 380 TLSVVPQLTGGSVYKYASFQVENDQERFLSDLRR-----DVQKVVGFDAVMRVRTSTGIR 434
Query: 422 VQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQS 481
G NT+ ++ GLD ++ + F+ D L
Sbjct: 435 AVDFFG---------------AFYMSNTTDVELAGLDGDKTVTVEFK------HDDRLNE 473
Query: 482 TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541
+ Q Y GQ RLR+ L+ + DL + + MA+ ++
Sbjct: 474 ESGAL-LQCALLYTSCAGQRRLRIHNLALNCCT---QLADLYRNCETDTLINYMAKF-AY 528
Query: 542 KMEIEAEFDPIRWLDKALIHMCSR-FGDYQKDXXXXXXXXXXXXXXXQ-----FMFHLRR 595
+ + + P++ + LI C++ Y+K+ ++ + +
Sbjct: 529 RGVLNS---PVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLK 585
Query: 596 SQFVQVFNN-SPDETAYFRMILNRENVTNSVVMIQPSLI 633
S +Q + D+ AY R ++ +VT + V P L+
Sbjct: 586 SDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLL 624
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 124/541 (22%), Positives = 202/541 (37%), Gaps = 93/541 (17%)
Query: 14 RMPWNVIPGTKQEASNCVVPVSAIYTPIK---AFPVNNNSMPILPYAPLRCRTCRSILNP 70
R IP T+ + +P+ + P K PV +S + RCR+CR+ +NP
Sbjct: 42 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIV------RCRSCRTYINP 95
Query: 71 F-SIVDFAAKIWICPFCFQRNHFPPH--YASITDDNLPAELFP--QYTTIEYEPPGPGE- 124
F S +D + W C C++ N P Y +T P Q TIE+ P
Sbjct: 96 FVSFLD--QRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYML 153
Query: 125 KSSVPPVFMFVVDTCIIEEEMSFLKS---ALSQAIDLLPDNSL--VGLITFGTLVQVHEL 179
+ PPV++FV D E +L S +L +DLLP N+ +G ITF + + + L
Sbjct: 154 RPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGL 213
Query: 180 GGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVP 239
+ +S+ Q+L +++ + D F+
Sbjct: 214 ---------------QESLSQPQML---------------IVSDIEDV--------FIPM 235
Query: 240 AFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGG 299
+ LN E +Q +P T T +AL A + +G R+ F
Sbjct: 236 PENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQTQ 295
Query: 300 PSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359
T G A+ K EP +H+ KD H + FY L+ Q +DLF +
Sbjct: 296 LPTLGVGAL--KPREEP--NHRSSAKDI--HMTPSTDFYKKLALDCSGQQVAVDLFLLSG 349
Query: 360 DQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDL--GLSSNGIFEINCS 417
+A L + G V S+ H V+++ L + + I C+
Sbjct: 350 QYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCT 409
Query: 418 KDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDA 477
K + + G + L S V A +M V++ + D
Sbjct: 410 KGLSIHTFHG--NFFVRSTDLLSLPNVNPDAGYAVQMS--------------VEESLTDT 453
Query: 478 TLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMAR 537
L S FQ Y + G+ R+RV TL V+ ++ D+ G D +A + ++A
Sbjct: 454 QLVS------FQSALLYTSSKGERRIRVHTLCLPVVS---TLNDVFLGADVQAISGLLAN 504
Query: 538 L 538
+
Sbjct: 505 M 505
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 126/586 (21%), Positives = 216/586 (36%), Gaps = 118/586 (20%)
Query: 11 DGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPL-RCRTCRSILN 69
D R IP T+ + +P+ + P + +P++ + RCR+CR+ +N
Sbjct: 41 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDL----TQLPVITSNTIVRCRSCRTYIN 96
Query: 70 PF-SIVDFAAKIWICPFCFQRNHFPPH--YASITDDNLPAELFP--QYTTIEY------- 117
PF S +D + W C C++ N P Y +T P Q +T+E+
Sbjct: 97 PFVSFID--QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYM 154
Query: 118 -EPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLK---SALSQAIDLLPDNS--LVGLITFG 171
PP P V++FV+D E +L +L + +D LP +S +G +TF
Sbjct: 155 LRPPQPA-------VYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFD 207
Query: 172 TLVQVHELG-GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSS 230
+ + + L G Q P+ + DV F+ P D L
Sbjct: 208 STIHFYNLQEGLSQ--PQMLIVSDIDDV-----------FLPTP-----------DSL-- 241
Query: 231 DTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQ-RSTRCTGTALSIAASLLGACVPGS 289
LV ++ +EL KD P+ +TR T +AL A + +
Sbjct: 242 ------LVNLYES--------KELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT 287
Query: 290 GARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQG 349
G R+ F + G + S+ S K + H A FY L+ Q
Sbjct: 288 GGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQ-----HLGPATDFYKKLALDCSGQQ 342
Query: 350 HVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA--------VFKDSVRRVFHSGD 401
+DLF + +A L + + G + SF + + KD R +
Sbjct: 343 TAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIG 402
Query: 402 YDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461
++ + I C+K + + G + L S A + A ++
Sbjct: 403 FE------AVMRIRCTKGLSMHTFHG--NFFVRSTDLLSLANINPDAGFAVQLS------ 448
Query: 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQD 521
+++ + D +L FQ Y + G+ R+RV TL V+ S+ D
Sbjct: 449 --------IEESLTDTSL------VCFQTALLYTSSKGERRIRVHTLCLPVVS---SLAD 491
Query: 522 LIAGFDQEAAAVVMARLVSFKMEIEAEFDPIRWLDKALIHMCSRFG 567
+ AG D +AA ++A + + + D L A++ S +G
Sbjct: 492 VYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYG 537
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/395 (20%), Positives = 152/395 (38%), Gaps = 65/395 (16%)
Query: 13 VRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA---PLRCRTCRSILN 69
+R P T A +P++A+ P P N + + ++ + P+RC C++ +
Sbjct: 50 IRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMC 109
Query: 70 PFSIVDFAAKIWICPFCFQRNHFPPHYASITDD-----------NLPAELFPQYTTIEY- 117
PF + + C FC N PP Y D L + T++Y
Sbjct: 110 PFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYC 169
Query: 118 ---EPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLV 174
+PP PP F+F++D S +K N LV LI
Sbjct: 170 RKSKPPN-------PPAFIFMIDV-----SYSNIK------------NGLVKLI------ 199
Query: 175 QVHELGGFGQIIPKTYVFKGSKD----VSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSS 230
EL + IPK + S ++ +++L N +P V+ V + +
Sbjct: 200 -CEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGE-VFV 257
Query: 231 DTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSG 290
+ FLV + + ++++L+++ D + ++ T + +L A PG
Sbjct: 258 PLLDGFLVNYQESQSVIHNLLDQI-PDMF-ADSNENETVFAPVIQAGMEALKAADCPG-- 313
Query: 291 ARILAFVGG-PSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQG 349
++ F P+ E P + +++ + + + K+ + YD+L+K V G
Sbjct: 314 -KLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKE-----KILFQPQTNVYDSLAKDCVAHG 367
Query: 350 HVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSF 384
+ LF V VA L + + TGG + ++F
Sbjct: 368 CSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNF 402
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 22/167 (13%)
Query: 11 DGVRMPWNVIPG-------TKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT 63
D +R N +P +K + P +Y I P+N + + + RCR
Sbjct: 64 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIV------RCRR 117
Query: 64 CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQY----TTIEYEP 119
CRS +NPF + W C FC N P +D N P + + +EY
Sbjct: 118 CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQ-SDPNDPKSRYDRNEIKCAVMEYMA 176
Query: 120 PGPGEKSSVPP-VFMFVVDTCIIEEEMSFLKSALS---QAIDLLPDN 162
P PP + F++D + L + ++ Q +D +P++
Sbjct: 177 PKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNH 223
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 31 VVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90
+ P +Y I P+N + + + RCR CRS +NPF + W C FC N
Sbjct: 207 IRPYQHLYDDIDPPPLNEDGLIV------RCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN 260
Query: 91 HFPPHYASITDDNLPAELFPQY----TTIEYEPPGPGEKSSVPP-VFMFVVDTCIIEEEM 145
P +D N P + + +EY P PP + F++D +
Sbjct: 261 DVPMQMDQ-SDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKS 319
Query: 146 SFLKSALS---QAIDLLPDN 162
L + ++ Q +D +P++
Sbjct: 320 GLLATTINTLLQNLDSIPNH 339
>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
Length = 288
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 484 NQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGF-DQEAAAVVMARLVS-F 541
N F+ + LT H C + L V S QDLI F Q +A+++ + S F
Sbjct: 19 NPFFTEVLTEISHECQKHHLHVAVASSE--ENEDKQQDLIETFVSQNVSAIILVPVKSKF 76
Query: 542 KMEIEAEFDPIRWLDKAL 559
+M+ E PI LD+ L
Sbjct: 77 QMKREWLKIPIMTLDREL 94
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 246 TLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGP 305
T+N +LEE+ +P Q R G L + S+ V G+G R L+F+G P+T
Sbjct: 429 TIN-LLEEM-VNPEAFRQRQAEARARGKYLGLGVSVFNE-VTGTGTRTLSFLGTPTTTHD 485
Query: 306 AAIV 309
+A V
Sbjct: 486 SATV 489
>pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1
Length = 311
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 342 SKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGD 401
K L ++ +A LD+VG + K A+E + LS + D + ++FH
Sbjct: 97 EKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNG 156
Query: 402 YDLGLSSNGIF 412
+ + SNGI
Sbjct: 157 FTTFVVSNGIL 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,050,508
Number of Sequences: 62578
Number of extensions: 802327
Number of successful extensions: 1703
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 22
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)