Query 005340
Match_columns 701
No_of_seqs 158 out of 760
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 4E-145 1E-149 1271.3 68.1 677 1-697 5-692 (769)
2 1m2o_A SEC23, protein transpor 100.0 3E-145 1E-149 1273.6 64.4 677 2-696 1-693 (768)
3 3eh1_A Protein transport prote 100.0 5E-126 2E-130 1103.4 58.8 592 6-681 36-667 (751)
4 3efo_B SEC24 related gene fami 100.0 7E-126 2E-130 1106.4 52.8 607 6-689 43-689 (770)
5 3eh2_A Protein transport prote 100.0 2E-124 6E-129 1094.2 55.1 604 6-683 39-679 (766)
6 1m2v_B SEC24, protein transpor 100.0 4E-123 1E-127 1093.4 54.8 600 6-679 175-823 (926)
7 1pcx_A Protein transport prote 100.0 8E-123 3E-127 1087.4 56.0 618 6-697 59-743 (810)
8 2yrc_A Protein transport prote 99.6 6.8E-17 2.3E-21 124.2 1.8 52 54-105 5-58 (59)
9 4fx5_A VON willebrand factor t 99.2 8.3E-08 2.8E-12 106.3 35.8 262 129-501 77-348 (464)
10 3ibs_A Conserved hypothetical 98.6 1.1E-06 3.8E-11 86.8 18.4 156 128-383 10-197 (218)
11 4b4t_W RPN10, 26S proteasome r 98.3 4.5E-06 1.5E-10 84.8 14.1 147 131-376 5-163 (268)
12 1q0p_A Complement factor B; VO 98.2 4E-05 1.4E-09 75.6 17.1 173 128-385 14-206 (223)
13 1v7p_C Integrin alpha-2; snake 98.2 3.6E-05 1.2E-09 75.0 16.4 162 128-386 5-183 (200)
14 1ijb_A VON willebrand factor; 98.2 6.1E-05 2.1E-09 73.5 17.8 163 128-386 12-183 (202)
15 2b2x_A Integrin alpha-1; compu 98.2 4.7E-05 1.6E-09 75.5 17.0 161 128-386 21-199 (223)
16 1atz_A VON willebrand factor; 98.1 0.00015 5E-09 69.9 19.1 158 128-386 4-172 (189)
17 1pt6_A Integrin alpha-1; cell 98.1 4.7E-05 1.6E-09 74.9 15.4 162 128-386 6-184 (213)
18 1shu_X Anthrax toxin receptor 98.1 0.00012 4.3E-09 69.6 17.4 155 128-380 5-163 (182)
19 2odp_A Complement C2; C3/C5 co 98.0 6.9E-05 2.4E-09 84.0 16.1 181 128-397 8-210 (509)
20 2x31_A Magnesium-chelatase 60 98.0 1.2E-06 4E-11 84.7 1.0 174 128-397 4-183 (189)
21 1rrk_A Complement factor B; BB 98.0 0.00012 4.3E-09 81.5 17.2 186 130-397 2-202 (497)
22 4hqf_A Thrombospondin-related 98.0 9E-05 3.1E-09 76.3 14.8 165 128-386 20-197 (281)
23 1mf7_A Integrin alpha M; cell 97.9 7.3E-05 2.5E-09 72.3 13.0 163 128-386 4-177 (194)
24 2x5n_A SPRPN10, 26S proteasome 97.9 0.00021 7.3E-09 69.2 16.0 145 130-374 3-159 (192)
25 1n3y_A Integrin alpha-X; alpha 97.9 0.0002 6.8E-09 69.2 15.9 163 128-386 8-181 (198)
26 3n2n_F Anthrax toxin receptor 97.8 0.00063 2.1E-08 64.8 16.2 156 129-383 7-168 (185)
27 4hqo_A Sporozoite surface prot 97.8 0.00024 8.2E-09 72.6 14.0 163 129-385 18-193 (266)
28 1mjn_A Integrin alpha-L; rossm 97.7 0.00059 2E-08 65.1 15.3 154 129-386 2-167 (179)
29 3hrz_D Complement factor B; se 97.6 0.00014 4.7E-09 85.5 9.5 177 129-385 243-434 (741)
30 3zqk_A VON willebrand factor; 97.5 0.0012 4.1E-08 64.1 14.0 50 128-177 20-74 (199)
31 2xgg_A Microneme protein 2; A/ 97.4 0.004 1.4E-07 59.1 16.0 143 128-367 16-168 (178)
32 3k6s_A Integrin alpha-X; cell 97.1 0.001 3.6E-08 80.8 9.6 160 129-386 130-302 (1095)
33 1jey_B KU80; double-strand DNA 97.0 0.0039 1.3E-07 70.6 12.7 44 130-173 8-62 (565)
34 1kcq_A Gelsolin, brevin, ADF, 96.0 0.0048 1.7E-07 53.2 4.0 46 629-674 2-49 (104)
35 2ww8_A RRGA, cell WALL surface 95.0 0.094 3.2E-06 62.1 11.4 47 128-174 223-279 (893)
36 1jey_A KU70; double-strand DNA 94.9 0.51 1.7E-05 53.6 17.0 68 268-360 140-208 (609)
37 3t3p_B Integrin beta-3; integr 94.5 2.6 8.8E-05 45.7 20.4 200 128-373 110-324 (472)
38 3fcs_B Integrin beta-3; beta p 94.5 0.59 2E-05 53.7 16.2 210 128-382 110-334 (690)
39 1svq_A Severin; actin-binding; 94.0 0.022 7.6E-07 49.9 2.4 47 628-674 11-59 (114)
40 3v4v_B Integrin beta-7; cell a 93.7 4.6 0.00016 44.0 20.2 202 128-376 131-346 (503)
41 2fh1_A Gelsolin; calcium, cont 93.4 0.039 1.3E-06 58.3 3.3 47 628-674 227-278 (344)
42 1j72_A Macrophage capping prot 93.2 0.054 1.9E-06 57.2 4.2 47 628-674 246-301 (347)
43 3rag_A Uncharacterized protein 93.2 0.095 3.2E-06 51.9 5.5 45 128-172 133-181 (242)
44 3fg7_A Villin-1; actin binding 93.1 0.053 1.8E-06 58.3 3.9 47 628-674 281-331 (398)
45 3vi3_B Integrin beta-1; beta p 92.9 4.2 0.00014 43.8 18.2 203 128-376 121-334 (454)
46 3fg6_A Adseverin, scinderin; C 92.9 0.057 1.9E-06 57.5 3.8 47 628-674 268-319 (371)
47 2iue_A Pactolus I-domain; memb 92.4 2.3 8E-05 41.1 14.2 45 129-173 3-51 (212)
48 1yvr_A RO autoantigen, 60-kDa 91.9 0.47 1.6E-05 53.1 9.8 32 268-304 444-475 (538)
49 1d0n_A Horse plasma gelsolin; 89.5 0.21 7.1E-06 58.1 4.2 50 626-675 610-664 (729)
50 3k6s_B Integrin beta-2; cell r 86.5 2.4 8.3E-05 48.5 10.4 208 128-382 103-324 (687)
51 2fh1_A Gelsolin; calcium, cont 83.6 0.64 2.2E-05 48.8 3.6 45 629-673 124-172 (344)
52 2nvo_A RO sixty-related protei 82.8 3.8 0.00013 45.6 9.7 32 268-304 440-471 (535)
53 3fg6_A Adseverin, scinderin; C 82.5 0.93 3.2E-05 48.1 4.4 45 629-673 165-214 (371)
54 1j72_A Macrophage capping prot 80.4 1 3.5E-05 47.3 3.8 45 629-673 135-181 (347)
55 2j9u_B VPS36, vacuolar protein 80.1 0.4 1.4E-05 37.8 0.4 19 79-97 16-34 (76)
56 2a20_A Regulating synaptic mem 74.8 0.64 2.2E-05 34.7 0.1 28 57-88 32-59 (62)
57 2gmg_A Hypothetical protein PF 70.3 1.2 4.3E-05 37.6 0.9 36 57-97 66-101 (105)
58 1d0n_A Horse plasma gelsolin; 69.2 3 0.0001 48.4 4.0 46 628-673 132-179 (729)
59 1gh9_A 8.3 kDa protein (gene M 67.6 2.1 7.3E-05 33.7 1.6 31 57-93 3-33 (71)
60 3rag_A Uncharacterized protein 67.1 18 0.0006 35.6 8.5 44 340-383 29-76 (242)
61 3fg7_A Villin-1; actin binding 65.4 1.3 4.4E-05 47.4 0.0 45 629-673 178-226 (398)
62 1pft_A TFIIB, PFTFIIBN; N-term 60.9 15 0.0005 26.4 5.1 29 58-89 5-33 (50)
63 1vq8_Z 50S ribosomal protein L 55.4 6.8 0.00023 31.8 2.6 30 58-91 27-56 (83)
64 4gat_A Nitrogen regulatory pro 54.7 4.5 0.00015 31.3 1.3 32 56-88 7-38 (66)
65 2vut_I AREA, nitrogen regulato 47.3 4.2 0.00014 28.6 0.1 30 58-88 1-30 (43)
66 3j20_Y 30S ribosomal protein S 40.4 13 0.00044 27.0 1.8 26 58-89 19-46 (50)
67 6rxn_A Rubredoxin; electron tr 39.9 5.4 0.00018 28.5 -0.3 9 80-88 30-38 (46)
68 3j21_g 50S ribosomal protein L 37.2 11 0.00036 27.6 0.9 30 56-93 12-41 (51)
69 1s24_A Rubredoxin 2; electron 37.1 6.5 0.00022 32.1 -0.2 32 57-88 34-76 (87)
70 1x0t_A Ribonuclease P protein 35.5 12 0.00042 32.6 1.3 35 59-93 66-107 (120)
71 1gnf_A Transcription factor GA 35.1 5.5 0.00019 28.4 -0.9 30 58-88 4-33 (46)
72 2hgo_A CASSIICOLIN; toxin, dis 34.0 24 0.00083 21.1 1.9 26 60-86 2-27 (27)
73 1yk4_A Rubredoxin, RD; electro 33.0 8.9 0.0003 28.1 -0.1 10 79-88 34-43 (52)
74 1yuz_A Nigerythrin; rubrythrin 32.0 14 0.00047 35.4 1.1 25 58-89 171-195 (202)
75 2csz_A Synaptotagmin-like prot 30.9 16 0.00054 29.0 1.0 31 59-89 43-73 (76)
76 2dj7_A Actin-binding LIM prote 30.4 49 0.0017 26.0 4.0 40 50-89 7-51 (80)
77 1e8j_A Rubredoxin; iron-sulfur 29.1 10 0.00035 27.8 -0.3 10 80-89 3-12 (52)
78 1dx8_A Rubredoxin; electron tr 29.0 12 0.00042 29.2 0.1 10 79-88 39-48 (70)
79 1zso_A Hypothetical protein; s 28.8 20 0.0007 33.0 1.6 35 58-92 37-82 (164)
80 4rxn_A Rubredoxin; electron tr 28.7 13 0.00043 27.6 0.1 10 79-88 35-44 (54)
81 1w7p_D VPS36P, YLR417W; ESCRT- 27.1 13 0.00045 41.2 0.0 20 78-97 115-134 (566)
82 2kn9_A Rubredoxin; metalloprot 26.1 13 0.00043 30.0 -0.3 10 79-88 59-68 (81)
83 2v3b_B Rubredoxin 2, rubredoxi 25.7 13 0.00043 27.7 -0.3 9 80-88 36-44 (55)
84 2k3r_A Ribonuclease P protein 24.5 20 0.0007 31.3 0.7 35 59-93 61-102 (123)
85 2kdx_A HYPA, hydrogenase/ureas 24.5 24 0.00083 30.5 1.2 28 58-91 73-101 (119)
86 2lk0_A RNA-binding protein 5; 24.2 20 0.0007 23.2 0.5 13 79-91 4-16 (32)
87 4hc9_A Trans-acting T-cell-spe 24.0 16 0.00054 31.6 -0.1 30 58-88 5-34 (115)
88 2apo_B Ribosome biogenesis pro 23.9 35 0.0012 25.8 1.8 27 56-92 4-30 (60)
89 1wii_A Hypothetical UPF0222 pr 22.4 19 0.00065 29.3 0.1 15 79-93 22-36 (85)
90 2avu_E Flagellar transcription 22.3 15 0.00053 34.6 -0.5 28 57-87 133-161 (192)
91 2zet_C Melanophilin; complex, 22.1 16 0.00055 33.3 -0.5 33 59-91 86-119 (153)
92 2l4z_A DNA endonuclease RBBP8, 21.5 83 0.0028 27.1 4.1 33 57-89 60-97 (123)
93 2k0a_A PRE-mRNA-splicing facto 21.0 32 0.0011 28.7 1.1 40 59-98 30-75 (109)
94 1zbd_B Rabphilin-3A; G protein 20.0 34 0.0012 30.3 1.2 33 59-91 73-109 (134)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=4.2e-145 Score=1271.26 Aligned_cols=677 Identities=47% Similarity=0.886 Sum_probs=618.8
Q ss_pred CCCcc----cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCCccccCC--CCceecCceEE
Q 005340 1 MTEFM----DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (701)
Q Consensus 1 ~~~~~----~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~ 74 (701)
||||+ +||+|+|||+|||+||.+++++++++||||++|+||++.+ ++|+++++|+||++ ||||+||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 78875 4899999999999999999999999999999999999764 79999999999999 99999999999
Q ss_pred EcCCceEEeCCCCCCCCCCccccCCCCCCCCccccCCCccEEEeCCCCCCCCCCCcEEEEEEECCCchhhHHHHHHHHHH
Q 005340 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (701)
Q Consensus 75 ~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvIDvs~~~~~l~~~~~~l~~ 154 (701)
+.+|++|+||||++.|++|++|+.++..++||||.|+++||||+++++.+ .||+|+||||+|.+++++++++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999999877889999998889999999998766 799999999999999999999999999
Q ss_pred HhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCCc-ccc
Q 005340 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSS-DTI 233 (701)
Q Consensus 155 ~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~p~ 233 (701)
+|+.||++++|||||||+.||||+++ ++ .++++|||+|+|+|+.+|+++|+++++. .+++.. + .++++| +|.
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~-~~~~~~vf~G~k~~~~~q~~~ml~v~d~--~~~~~~-~--~~~~~f~~p~ 230 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CE-GISKSYVFRGTKDLSAKQLQEMLGLSKV--PVTQAT-R--GPQVQQPPPS 230 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CC-SSCEEEEEETTSCCCSHHHHHHHC------------------------CC
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CC-CCccceeecCCccccHHHHHHHhCCCCc--cccccc-c--cccccCCCcc
Confidence 99999999999999999999999999 76 6789999999999999999999877641 000000 0 002344 567
Q ss_pred cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCC
Q 005340 234 ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNL 313 (701)
Q Consensus 234 ~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~ 313 (701)
++||+|++++++.|+++|++|++++|++++++++.||+|+||++|..+|+..+++.||||++|++|+||.|||+|+.++.
T Consensus 231 ~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~ 310 (769)
T 2nut_A 231 NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDEL 310 (769)
T ss_dssp CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred cceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCccc
Confidence 89999999999999999999999888888889999999999999999999877789999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchhhHHHH
Q 005340 314 SEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSV 393 (701)
Q Consensus 314 ~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l 393 (701)
++++|+|+|++||++++++++.+||+++|++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|.++|
T Consensus 311 ~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l 390 (769)
T 2nut_A 311 KTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTF 390 (769)
T ss_dssp TSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHH
T ss_pred ccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCcEEEEEEEEecC
Q 005340 394 RRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKK 472 (701)
Q Consensus 394 ~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 472 (701)
+|.| ++..+++.+||+|+||||||+||+|++++||++..+++++++||+++|+|+++.|+++++++++||+|+|++++.
T Consensus 391 ~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~ 470 (769)
T 2nut_A 391 QRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQ 470 (769)
T ss_dssp HHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC--
T ss_pred HHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCc
Confidence 9999 444444578999999999999999999999999998899999999999999999999999999999999999987
Q ss_pred CCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCH---HHHHhccCHHHHHHHHHHHHHHHhhcCCch
Q 005340 473 EIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV---QDLIAGFDQEAAAVVMARLVSFKMEIEAEF 549 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~---~~~~~~~D~~a~~~~lak~~~~~~~~~~~~ 549 (701)
... ++ .....+|||+|++||+.+|+|||||||+++++++ +. .++|+++|+||++++|||+++.++++++..
T Consensus 471 ~~~--~l-~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~---~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~ 544 (769)
T 2nut_A 471 HNA--PI-PQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWAD---AQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP 544 (769)
T ss_dssp -----------CCEEEEEEEEEEETTSCEEEEEEEEEECBCC---GGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---
T ss_pred ccc--cc-CCCCeEEEEEEEEEECCCCCEEEEEEeecccccC---CcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHH
Confidence 421 01 1357899999999999999999999999999995 45 699999999999999999999999999899
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCCCccccCccccchHHHHHHhhcccCcCCCCCChhHHHHHHHHHccCCHHHHHHhhc
Q 005340 550 DPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMIQ 629 (701)
Q Consensus 550 ~~~~~l~~~lv~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~D~r~~~~~~l~~~~~~~~~~~iy 629 (701)
|+|+||+++|+++|.+|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+++++.++++++.+++.|||
T Consensus 545 d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iy 624 (769)
T 2nut_A 545 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQ 624 (769)
T ss_dssp CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccCCCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCCCCccHHHHHHhhhh
Q 005340 630 PSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQVVNFVVDFD 697 (701)
Q Consensus 630 P~l~~~~~~~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~~~e~~~~~~~~~~~ 697 (701)
|+||++|.++.|++++||+++|.+|||||||+|++++||+|++|++|++++||++|||++|+++|++.
T Consensus 625 P~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p 692 (769)
T 2nut_A 625 PILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAP 692 (769)
T ss_dssp CEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHH
T ss_pred CEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhH
Confidence 99999999889999999999999999999999999999999999999999999999999999999864
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=3.4e-145 Score=1273.58 Aligned_cols=677 Identities=42% Similarity=0.781 Sum_probs=621.3
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCCccccCC--CCceecCceEEEcCCc
Q 005340 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (701)
Q Consensus 2 ~~~~~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~p~RC~~--C~ayiNp~~~~~~~g~ 79 (701)
|||+++|+++|||+|||+||.+++++++++||||++|+||++.+ ++|+++++|+||++ ||||+||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 78999999999999999999999999999999999999999754 78999999999999 9999999999999999
Q ss_pred eEEeCCCCCCCCCCccccCCCCCCCCccccCCCccEEEeCCCCCCCCCCCcEEEEEEECCCchhhHHHHHHHHHHHhhcC
Q 005340 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (701)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~l 159 (701)
+|+||||++.|++|++|+.+++.++|||| +++||||++|++++ .||+|+||||+|.+++++++++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999977788899999 89999999998776 89999999999999999999999999999999
Q ss_pred CCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHh-hcccCCCCCCCccccCccCCC--Cc--cccc
Q 005340 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGVRDGL--SS--DTIA 234 (701)
Q Consensus 160 p~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~--~~--~p~~ 234 (701)
|++++|||||||+.||||+++ +. .+++++||+|+|+|+.+|+++|+ ++++. ..+++ .+. +.++ .+ .|.+
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~-~~~~~~V~~g~k~~~~~q~~~~l~~l~~~-~~~~~--~~~-~~~~~f~p~~~~~~ 225 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEMLTGQKPT-GPGGA--ASH-LPNAMNKVTPFSLN 225 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SS-SSEEEEEEETTSCCCHHHHHHHHHSCCCC-------------------CCSSSGG
T ss_pred CCCCEEEEEEECCEEEEEECC-CC-CCcceeeecCCccccHHHHHHHHhhcccc-ccCCc--ccc-ccccccccccCCcc
Confidence 999999999999999999999 76 58999999999999999999998 77541 00000 000 0012 22 2358
Q ss_pred ceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccccCCCC
Q 005340 235 RFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLS 314 (701)
Q Consensus 235 ~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~~ 314 (701)
+||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|+..+++.||||++|++|+||.|||+|+.++.+
T Consensus 226 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~ 305 (768)
T 1m2o_A 226 RFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELK 305 (768)
T ss_dssp GGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred ceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCccccccccc
Confidence 89999999999999999999998888888899999999999999999997777899999999999999999999999999
Q ss_pred CCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchhhHHHHH
Q 005340 315 EPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVR 394 (701)
Q Consensus 315 ~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~ 394 (701)
+++|+|+|++|+++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++++
T Consensus 306 ~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~ 385 (768)
T 1m2o_A 306 DPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL 385 (768)
T ss_dssp SCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHH
T ss_pred cccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-ccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCC-CCCCcccccccCCCCCceEEecCCCCcEEEEEEEEecC
Q 005340 395 RVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKK 472 (701)
Q Consensus 395 ~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~-~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~ 472 (701)
|+| ++..+++.+||+|+||||||+||+|++++||++..++ |++++||++||+|+++.|+++++++++||+|+|+++++
T Consensus 386 r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~ 465 (768)
T 1m2o_A 386 RLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANT 465 (768)
T ss_dssp HTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC
T ss_pred HHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccc
Confidence 999 4444455789999999999999999999999998876 88899999999999999999999999999999999987
Q ss_pred CCCcc-----cccC--CCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhc
Q 005340 473 EIPDA-----TLQS--TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEI 545 (701)
Q Consensus 473 ~~~~~-----~~~~--~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~~~~~~~ 545 (701)
...++ ++ . ....+|||+|++||+.+|+|||||||+++++++ .++.++|+++|+||++++|||+++.++.+
T Consensus 466 ~~~~~~~~~~~l-~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~--~~~~~v~~~~Dqea~~~llar~av~~~~~ 542 (768)
T 1m2o_A 466 AANSNPMMSAPG-SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLP--FGTPAIAASFDQEAAAVLMARIAVHKAET 542 (768)
T ss_dssp ------------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEEC--TTCHHHHHTBCHHHHHHHHHHHHHHHTTS
T ss_pred cccccccccccc-cccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccC--ccHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 63100 00 0 357899999999999999999999999999994 13889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccccCCCCccccCccccchHHHHHHhhcccCcCCCCCChhHHHHHHHHHccCCHHHHH
Q 005340 546 EAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSV 625 (701)
Q Consensus 546 ~~~~~~~~~l~~~lv~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~D~r~~~~~~l~~~~~~~~~ 625 (701)
++..|+|+||+++|+++|.+|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+++++.++++++.+++
T Consensus 543 ~~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~l 622 (768)
T 1m2o_A 543 DDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSL 622 (768)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccceecccCCCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCCCCccHHHHHHhhh
Q 005340 626 VMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQVVNFVVDF 696 (701)
Q Consensus 626 ~~iyP~l~~~~~~~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~~~e~~~~~~~~~~ 696 (701)
.||||+||++|.++.|++++||+++|.+|||||||+|++++||+|++|++|++++||++|||++|+++|++
T Consensus 623 ~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~ 693 (768)
T 1m2o_A 623 IMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEE 693 (768)
T ss_dssp HHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHH
T ss_pred HhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhh
Confidence 99999999999988999999999999999999999999999999999999999999999999999999974
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=4.9e-126 Score=1103.36 Aligned_cols=592 Identities=20% Similarity=0.342 Sum_probs=528.8
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCC-CccccCCCCceecCceEEEcCCceEEeC
Q 005340 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY-APLRCRTCRSILNPFSIVDFAAKIWICP 84 (701)
Q Consensus 6 ~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~-~p~RC~~C~ayiNp~~~~~~~g~~w~C~ 84 (701)
.|++|+|||+|||+||.|++++++++||||++|+||++.. ++|++++ +|+||++||||+||||+|.+ |++|+||
T Consensus 36 ~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~~~p~RC~rCrayiNPf~~f~~-~~~w~Cn 110 (751)
T 3eh1_A 36 LNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITSNTIVRCRSCRTYINPFVSFID-QRRWKCN 110 (751)
T ss_dssp HSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECCSCCCBCTTTCCBCCTTCEESS-SSEEECT
T ss_pred cCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCCCCCCcccCccCEeCCceEEec-CCEEEcc
Confidence 4999999999999999999999999999999999999875 7898765 58999999999999999954 6999999
Q ss_pred CCCCCCCCCccccC--C----CCCCCCccccCCCccEEEeCCCC----CCCCCCCcEEEEEEECCCchhh---HHHHHHH
Q 005340 85 FCFQRNHFPPHYAS--I----TDDNLPAELFPQYTTIEYEPPGP----GEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (701)
Q Consensus 85 ~C~~~N~~p~~y~~--~----~~~~~~pEL~~~~~tvey~~~~~----~~~~~~~p~~vFvIDvs~~~~~---l~~~~~~ 151 (701)
||+..|++|++|+. + .+.++|||| +++||||++|++ ++ .||+|+||||||..+++ +++++++
T Consensus 111 ~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL--~~~tvEy~~p~~y~~r~p---~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 111 LCYRVNDVPEEFMYNPLTRSYGEPHKRPEV--QNSTVEFIASSDYMLRPP---QPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp TTCCEEECCGGGC---------CGGGSHHH--HCSEEEEEECGGGCSSSC---CCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred cccCCCCCCHHHhcccccccccCcccCchh--ccceEEEEcChhhhcCCC---CCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 99999999999953 2 356799999 799999999953 33 79999999999999988 8999999
Q ss_pred HHHHhhcCCCCc--EEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCC
Q 005340 152 LSQAIDLLPDNS--LVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLS 229 (701)
Q Consensus 152 l~~~l~~lp~~~--~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (701)
|+++|+.||+++ +|||||||+.||||+++ +++..|+++| ++| ++++
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~-~~~~~~qmlv-----------------v~d--------------l~d~ 233 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQ-EGLSQPQMLI-----------------VSD--------------IDDV 233 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECC-TTCSSCEEEE-----------------ESC--------------TTCT
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECC-CCcccceeec-----------------ccc--------------cccc
Confidence 999999999865 99999999999999999 6655565544 322 1235
Q ss_pred ccc-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCccc
Q 005340 230 SDT-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAI 308 (701)
Q Consensus 230 ~~p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l 308 (701)
|+| .++||+|++||++.|+++|++|+. +| ++++++.+|+|+||++|..+|+ ..||||++|++|+||.|||+|
T Consensus 234 f~P~~~~~lv~l~e~~~~i~~lL~~Lp~-~~--~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l 306 (751)
T 3eh1_A 234 FLPTPDSLLVNLYESKELIKDLLNALPN-MF--TNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLL 306 (751)
T ss_dssp TSCCGGGTSEETTTTHHHHHHHHHHGGG-TS--TTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCC
T ss_pred CCCChhhhcccHHHHHHHHHHHHHhhhH-hh--cCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCcc
Confidence 666 388999999999999999999987 54 6678999999999999999998 789999999999999999999
Q ss_pred ccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCch-
Q 005340 309 VSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA- 387 (701)
Q Consensus 309 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~- 387 (701)
+.|+.++ .|+|. |+ +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+.+
T Consensus 307 ~~r~~~~-~~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~ 381 (751)
T 3eh1_A 307 QSREDPN-QRSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTH 381 (751)
T ss_dssp CCCCCSC-GGGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTT
T ss_pred ccccccc-cCCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCccccc
Confidence 9998554 35542 33 688999999999999999999999999999999999999999999999999999999853
Q ss_pred ------hhHHHHHHHhccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCc
Q 005340 388 ------VFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461 (701)
Q Consensus 388 ------~~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~ 461 (701)
+|.++++|.|++ .+||+|+||||||+||+|++++||++. ++++.|+++++++|+
T Consensus 382 ~~~~~~~f~~dl~r~l~~-----~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~d~ 441 (751)
T 3eh1_A 382 NPSQAEKLQKDLKRYLTR-----KIGFEAVMRIRCTKGLSMHTFHGNFFV---------------RSTDLLSLANINPDA 441 (751)
T ss_dssp BHHHHHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSEE---------------CSSSEEEEEEECTTC
T ss_pred chhHHHHHHHHHHHHHhh-----hhccceEEEEEecCCeEEEEeeCCeEe---------------CCCCceEeccCCCCC
Confidence 788899999954 479999999999999999999999984 467899999999999
Q ss_pred EEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHHHH
Q 005340 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541 (701)
Q Consensus 462 s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~~~ 541 (701)
+|+|+|++++++. +...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|||+|+.
T Consensus 442 s~~v~~~~~~~l~-------~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~---~~~~v~~~~DqeA~~~llar~av~ 511 (751)
T 3eh1_A 442 GFAVQLSIEESLT-------DTSLVCFQTALLYTSSKGERRIRVHTLCLPVVS---SLADVYAGVDVQAAICLLANMAVD 511 (751)
T ss_dssp CEEEEEEESSCCC-------SCSEEEEEEEEEEECTTSCEEEEEEEEEEEEEC---SHHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCC-------CCCceEEEEEEeeecCCCCEEEEEEEecccccC---CHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999874 256899999999999999999999999999995 799999999999999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHhhccccCC-CCccccCccccchHHHHHHhhcccCcCC-CCCChhHHHHHHHHHccC
Q 005340 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETAYFRMILNRE 619 (701)
Q Consensus 542 ~~~~~~~~~~~~~l~~~lv~~~~~~~~y~~~~-~~~l~lp~~l~~lP~~~~~l~ks~~l~~-~~~s~D~r~~~~~~l~~~ 619 (701)
++.+++..|+|+||++++++++..|+.|.++. +++|+||++||+||+||++|+||.+|+. .++++|||+|+++.++++
T Consensus 512 ~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~ 591 (751)
T 3eh1_A 512 RSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQ 591 (751)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHS
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCC
Confidence 99999999999999999999988888777653 4589999999999999999999999985 799999999999999999
Q ss_pred CHHHHHHhhcccceeccc---------CC----CCcccccccccccCCeEEEEeCCcEEEEEECCCh-hHHHHcCC
Q 005340 620 NVTNSVVMIQPSLISYSF---------HS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI-AQWRKAGY 681 (701)
Q Consensus 620 ~~~~~~~~iyP~l~~~~~---------~~----~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v-~~~~~~~~ 681 (701)
++.+++.||||+||++|. ++ .|..++||+++|.+|||||||+|++++||+|++| ++|+++-+
T Consensus 592 ~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlF 667 (751)
T 3eh1_A 592 PLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVL 667 (751)
T ss_dssp CHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTT
T ss_pred CHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHc
Confidence 999999999999999983 22 2445677999999999999999999999999999 56775544
No 4
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=6.6e-126 Score=1106.44 Aligned_cols=607 Identities=19% Similarity=0.313 Sum_probs=536.5
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCC---CCCccccCCCCceecCceEEEcCCceEE
Q 005340 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPIL---PYAPLRCRTCRSILNPFSIVDFAAKIWI 82 (701)
Q Consensus 6 ~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~---~~~p~RC~~C~ayiNp~~~~~~~g~~w~ 82 (701)
.|++|+|||+|||+||.+++++++++||||++|+||++..++|.++|++ +++|+||++|||||||||+|+++|++|+
T Consensus 43 gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 122 (770)
T 3efo_B 43 GNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQ 122 (770)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEE
T ss_pred CCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEE
Confidence 3999999999999999999999999999999999999987767778887 4579999999999999999999999999
Q ss_pred eCCCCCCCCCCccccC-CC------CCCCCccccCCCccEEEeCCCC------CCCCCCCcEEEEEEECCCchhh---HH
Q 005340 83 CPFCFQRNHFPPHYAS-IT------DDNLPAELFPQYTTIEYEPPGP------GEKSSVPPVFMFVVDTCIIEEE---MS 146 (701)
Q Consensus 83 C~~C~~~N~~p~~y~~-~~------~~~~~pEL~~~~~tvey~~~~~------~~~~~~~p~~vFvIDvs~~~~~---l~ 146 (701)
||||++.|++|++|++ ++ +.++|||| .++||||++|.+ ++ .||+|+||||||..+++ ++
T Consensus 123 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL--~~~tvEf~ap~eY~~~~~~p---~pp~y~FvIDvs~~av~sg~l~ 197 (770)
T 3efo_B 123 CGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPEL--SLGSYEYVATLDYCRKSKPP---NPPAFIFMIDVSYSNIKNGLVK 197 (770)
T ss_dssp CTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHH--HCSEEEEECCGGGSGGGSCC---CCCEEEEEEECSHHHHHTTHHH
T ss_pred eccccccCCCchHhhccccccccccccccCccc--ccCceeeecCHHHhccCCCC---CCcEEEEEEEcchhhccchHHH
Confidence 9999999999999986 33 34689999 689999999842 33 79999999999999874 99
Q ss_pred HHHHHHHHHhhcCCCC-------cEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCc
Q 005340 147 FLKSALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTG 219 (701)
Q Consensus 147 ~~~~~l~~~l~~lp~~-------~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~ 219 (701)
+++++|+++|+.||++ ++|||||||+.||||+++ +.++.++++|++ |
T Consensus 198 ~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~q~q~~vv~-----------------d-------- 251 (770)
T 3efo_B 198 LICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK-SNLAQPQMMVVT-----------------D-------- 251 (770)
T ss_dssp HHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC-TTCSSCEEEEEC-----------------C--------
T ss_pred HHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC-CcccCceEEEec-----------------c--------
Confidence 9999999999999975 899999999999999998 665666655532 2
Q ss_pred cccCccCCCCccc-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEec
Q 005340 220 VIAGVRDGLSSDT-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298 (701)
Q Consensus 220 ~~~~~~~~~~~~p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~ 298 (701)
++++|+| .++||+|++||++.|+++|++|+. +|. ..+...+|+|+||++|..+++.. +.||||++|++
T Consensus 252 ------~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~-~~~--~~~~~~t~~g~al~aa~~~l~~~--~~GGkI~~F~s 320 (770)
T 3efo_B 252 ------VGEVFVPLLDGFLVNYQESQSVIHNLLDQIPD-MFA--DSNENETVFAPVIQAGMEALKAA--DCPGKLFIFHS 320 (770)
T ss_dssp ------TTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHH-HHH--TCCCCCCCCHHHHHHHHHHHHHH--TCCEEEEEEEC
T ss_pred ------cccccCCCccceeeeHHHHHHHHHHHHHhhHh-hcc--CCCCCcchHHHHHHHHHHHhccC--CCCcEEEEEec
Confidence 1235677 488999999999999999999987 563 34456789999999999999742 57999999999
Q ss_pred CCCC-CCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccce
Q 005340 299 GPST-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGL 377 (701)
Q Consensus 299 g~pt-~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~ 377 (701)
|+|+ .|||+|+.|+.++.+|++ || +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 321 ~lP~t~GpG~l~~r~~~~~~~t~----ke-~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~ 395 (770)
T 3efo_B 321 SLPTAEAPGKLKNRDDKKLVNTD----KE-KILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGT 395 (770)
T ss_dssp SCCCSSSTTCCCCCCCCCCSSCS----CG-GGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCC
T ss_pred CCCCcCCCccccccccccccCCc----ch-hhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCce
Confidence 9776 899999999998888763 44 57999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCchhhHHHHHHHh-ccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEec
Q 005340 378 VVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCG 456 (701)
Q Consensus 378 v~~~~~f~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~ 456 (701)
+++|++|+.+.+.+.|.+.| +.. .+.+||+|+||||||+|++|.+++||+.. |+++.|++++
T Consensus 396 v~~y~~F~~~~~~~~f~~dl~~~l--~~~~gf~a~mrVR~S~gl~v~~~~G~~~~---------------~~t~~~~l~~ 458 (770)
T 3efo_B 396 LYKYNNFQMHLDRQQFLNDLRNDI--EKKIGFDAIMRVRTSTGFRATDFFGGILM---------------NNTTDVEMAA 458 (770)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEESSCBC---------------SSSSCEEEEE
T ss_pred EEEecCCcchhHHHHHHHHHHHhh--hhceeeeEEEEEEecCCeEEEEeECCeeC---------------CCCCceEecc
Confidence 99999999876666665555 222 24689999999999999999999999863 4678999999
Q ss_pred CCCCcEEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHH
Q 005340 457 LDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMA 536 (701)
Q Consensus 457 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~la 536 (701)
++++++|+|+|++++++. ....+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++||
T Consensus 459 ~~~d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~---~~~~v~~~~Dqea~~~lla 528 (770)
T 3efo_B 459 IDCDKAVTVEFKHDDKLS-------EDSGALIQCAVLYTTISGQRRLRIHNLGLNCSS---QLADLYKSCETDALINFFA 528 (770)
T ss_dssp EESSCCEEEEEEESSCCB-------TTTBEEEEEEEEEECTTCCEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHH
T ss_pred cCcCceEEEEEEecCCCC-------CCCcEEEEEEEEEEcCCCCEEEEEEEechhhcc---cHHHHHHhcCHHHHHHHHH
Confidence 999999999999999874 256899999999999999999999999999995 7999999999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHhhccccCC-----CCccccCccccchHHHHHHhhcccCcCC-CCCChhHHH
Q 005340 537 RLVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETA 610 (701)
Q Consensus 537 k~~~~~~~~~~~~~~~~~l~~~lv~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~l~ks~~l~~-~~~s~D~r~ 610 (701)
|+|+.++++++..++|+.|.++++++ |+.|||++ ++||+||++||+||+||++|+||++|++ +++++|||+
T Consensus 529 r~av~~~~~~~l~~~r~~L~~~~~~~---l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~ 605 (770)
T 3efo_B 529 KSAFKAVLHQPLKVIREILVNQTAHM---LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERA 605 (770)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHH---HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHH
Confidence 99999999887766666666555544 89999875 3569999999999999999999999996 799999999
Q ss_pred HHHHHHccCCHHHHHHhhcccceeccc-----CCCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCCCC
Q 005340 611 YFRMILNRENVTNSVVMIQPSLISYSF-----HSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQP 685 (701)
Q Consensus 611 ~~~~~l~~~~~~~~~~~iyP~l~~~~~-----~~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~~~ 685 (701)
|++++++++++.+++.||||+||++|. +..|++++||.++|.+|||||||+|++++||+|++|++|+.+++++.+
T Consensus 606 ~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~ 685 (770)
T 3efo_B 606 YQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVP 685 (770)
T ss_dssp HHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSS
T ss_pred HHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCC
Confidence 999999999999999999999999983 246999999999999999999999999999999999999988777765
Q ss_pred ccHH
Q 005340 686 EHQV 689 (701)
Q Consensus 686 e~~~ 689 (701)
+++.
T Consensus 686 ~~~~ 689 (770)
T 3efo_B 686 SFAH 689 (770)
T ss_dssp SGGG
T ss_pred chhh
Confidence 5543
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-124 Score=1094.20 Aligned_cols=604 Identities=20% Similarity=0.317 Sum_probs=532.4
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCC---CCccccCCCCceecCceEEEcCCceEE
Q 005340 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWI 82 (701)
Q Consensus 6 ~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~---~~p~RC~~C~ayiNp~~~~~~~g~~w~ 82 (701)
.|++|+|||+|||+||.|++++++++||||++|+||++..+.|.++|+++ ++|+||++|||||||||+|+++|++|+
T Consensus 39 gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 118 (766)
T 3eh2_A 39 GNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQ 118 (766)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEE
T ss_pred CCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEE
Confidence 39999999999999999999999999999999999999887777788874 579999999999999999999999999
Q ss_pred eCCCCCCCCCCccccC-C------CCCCCCccccCCCccEEEeCCCCCC---CCCCCcEEEEEEECCCchhh---HHHHH
Q 005340 83 CPFCFQRNHFPPHYAS-I------TDDNLPAELFPQYTTIEYEPPGPGE---KSSVPPVFMFVVDTCIIEEE---MSFLK 149 (701)
Q Consensus 83 C~~C~~~N~~p~~y~~-~------~~~~~~pEL~~~~~tvey~~~~~~~---~~~~~p~~vFvIDvs~~~~~---l~~~~ 149 (701)
||||++.|++|++|++ + .+.++|||| ..++|||++|.+-. .++.||+|+||||||..+++ +++++
T Consensus 119 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL--~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~ 196 (766)
T 3eh2_A 119 CCFCSCINDVPPQYFQHLDHTGKRVDAYDRPEL--SLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLC 196 (766)
T ss_dssp CTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHH--HCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHH
T ss_pred eccccccCCCCHHHhccccccccccccccCccc--ccCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHH
Confidence 9999999999999976 2 245799999 68999999884310 11279999999999999874 89999
Q ss_pred HHHHHHhhcCCCC-------cEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCcccc
Q 005340 150 SALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIA 222 (701)
Q Consensus 150 ~~l~~~l~~lp~~-------~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 222 (701)
++|+++|+.||++ ++|||||||+.||||+++ ++++.|+++|+. |++
T Consensus 197 ~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q~~vv~--------dl~------------------ 249 (766)
T 3eh2_A 197 EELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVK-SSLAQPQMMVVS--------DVA------------------ 249 (766)
T ss_dssp HHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECC-TTCSSCEEEEEC--------CTT------------------
T ss_pred HHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECC-CCCCCceEEEec--------Chh------------------
Confidence 9999999999975 899999999999999999 765678877742 221
Q ss_pred CccCCCCccc-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCC
Q 005340 223 GVRDGLSSDT-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPS 301 (701)
Q Consensus 223 ~~~~~~~~~p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~p 301 (701)
++|+| .++||+|++||++.|+++|++|++ +| ++.+.+.+|+|+||++|..+++.. +.||||++|++|+|
T Consensus 250 -----d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~-~~--~~~~~~~t~~g~al~aa~~~l~~~--~~GGkI~~F~s~lP 319 (766)
T 3eh2_A 250 -----DMFVPLLDGFLVNVNESRAVITSLLDQIPE-MF--ADTRETETVFVPVIQAGMEALKAA--ECAGKLFLFHTSLP 319 (766)
T ss_dssp -----TCCCCCCTTSSBCTTTTHHHHHHHHHHHHH-HH--TTCCCCCCCSHHHHHHHHHHHHHT--TCCEEEEEEECSCC
T ss_pred -----hhccccccceeEeHHHHHHHHHHHHHhhhh-hc--cCCCCCcchHHHHHHHHHHHhccC--CCCcEEEEEecCCC
Confidence 34566 488999999999999999999997 55 334556789999999999999842 57999999999977
Q ss_pred C-CCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEE
Q 005340 302 T-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVL 380 (701)
Q Consensus 302 t-~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~ 380 (701)
+ .|||+|+.|+.++.+|+ +|| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++
T Consensus 320 ~t~GpG~l~~r~~~~~~~s----dke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~ 394 (766)
T 3eh2_A 320 IAEAPGKLKNRDDRKLINT----DKE-KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYK 394 (766)
T ss_dssp CSSSTTCCCCCCCGGGTTS----TTG-GGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEE
T ss_pred CcCCCcccccccccccCCC----cch-hhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEE
Confidence 6 89999999998888876 344 47999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCchhhHHHHHHHh-ccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCC
Q 005340 381 SDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDK 459 (701)
Q Consensus 381 ~~~f~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~ 459 (701)
|++|+.+.+.+.|.+.| +.. .+.+||+|+||||||+|++|++++||+.. |+++.|+++++++
T Consensus 395 y~~F~~~~d~~~f~~dl~~~l--~~~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~ 457 (766)
T 3eh2_A 395 YASFQVENDQERFLSDLRRDV--QKVVGFDAVMRVRTSTGIRAVDFFGAFYM---------------SNTTDVELAGLDG 457 (766)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEEESCBC---------------SSSSCEEEEEEET
T ss_pred eCCCcchhHHHHHHHHHHHHh--hhcceeeEEEEEEecCCeEEEEeECCeec---------------CCCCceeeccCCC
Confidence 99999876544444443 211 24589999999999999999999999874 4688999999999
Q ss_pred CcEEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHH
Q 005340 460 ATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLV 539 (701)
Q Consensus 460 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~ 539 (701)
|++|+|+|++++++. ....+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|||+|
T Consensus 458 d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~---~~~~v~~~~Dqea~~~llar~a 527 (766)
T 3eh2_A 458 DKTVTVEFKHDDRLN-------EESGALLQCALLYTSCAGQRRLRIHNLALNCCT---QLADLYRNCETDTLINYMAKFA 527 (766)
T ss_dssp TCCEEEEEEESSCCC-------TTTCEEEEEEEEEECTTSCEEEEEEEEEEEEES---SHHHHHHTBCHHHHHHHHHHHH
T ss_pred CceEEEEEEecCCCC-------CCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecC---CHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999874 257899999999999999999999999999995 7999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHhhccccCC-----CCccccCccccchHHHHHHhhcccCcCC-CCCChhHHHHHH
Q 005340 540 SFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETAYFR 613 (701)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~~lv~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~l~ks~~l~~-~~~s~D~r~~~~ 613 (701)
+.++.+++..++|++|.++++++ |+.|||++ +++|+||++||+||+||++|+||++|++ .++++|||+|++
T Consensus 528 v~~~~~~~~~~~R~~l~~~~~~~---l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~ 604 (766)
T 3eh2_A 528 YRGVLNSPVKAVRDTLITQCAQI---LACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVR 604 (766)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHH
T ss_pred HHHhhhCCHHHHHHHHHHHHHHH---HHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHH
Confidence 99999998888998888877766 88888874 3469999999999999999999999996 689999999999
Q ss_pred HHHccCCHHHHHHhhcccceeccc---C--CCCcccccccccccCCeEEEEeCCcEEEEEECCChhHHHHcCCCC
Q 005340 614 MILNRENVTNSVVMIQPSLISYSF---H--SGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHN 683 (701)
Q Consensus 614 ~~l~~~~~~~~~~~iyP~l~~~~~---~--~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~~~~~~~~~ 683 (701)
+.++++++.+++.||||+||++|. + ..|++++||.++|.+|||||||+|++++||+|++|++|+-+++++
T Consensus 605 ~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFg 679 (766)
T 3eh2_A 605 QLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFS 679 (766)
T ss_dssp HHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcC
Confidence 999999999999999999999983 3 269999999999999999999999999999999997765554443
No 6
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=3.8e-123 Score=1093.39 Aligned_cols=600 Identities=18% Similarity=0.265 Sum_probs=528.6
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCC-ccccCCCCceecCceEEEcCCceEEeC
Q 005340 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (701)
Q Consensus 6 ~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~-p~RC~~C~ayiNp~~~~~~~g~~w~C~ 84 (701)
.||+++|||+|||+||.+++++++++|||||+|+||++..++++++|+++.+ |+||++|||||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 4999999999999999999999999999999999999976666788988764 999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCC------CCCccccCCCccEEEeCCCCCC-CCCCCcEEEEEEECCCchhh---HHHHHHHHHH
Q 005340 85 FCFQRNHFPPHYASITDD------NLPAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEE---MSFLKSALSQ 154 (701)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~------~~~pEL~~~~~tvey~~~~~~~-~~~~~p~~vFvIDvs~~~~~---l~~~~~~l~~ 154 (701)
||++.|++|++|+ ++.. .+|||| +++||||+++++.. .+..||+|+||||+|.++++ +++++++|++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL--~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~ 331 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEI--KCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 331 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHH--HCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCccc--cCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHH
Confidence 9999999999998 4433 356999 79999999995310 01179999999999999987 8899999999
Q ss_pred HhhcCCC---CcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCCcc
Q 005340 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (701)
Q Consensus 155 ~l~~lp~---~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (701)
+|+.||+ +++|||||||+.||||+++ ++ . .|+|+ +.+| .+|++++| ++++|+
T Consensus 332 ~L~~LP~~~~~~~VGlITFds~Vh~y~l~-~~-~-------~g~k~-~~~q-~qmlvvsd--------------l~d~f~ 386 (926)
T 1m2v_B 332 NLDSIPNHDERTRISILCVDNAIHYFKIP-LD-S-------ENNEE-SADQ-INMMDIAD--------------LEEPFL 386 (926)
T ss_dssp TTTTSCCTTSCCEECEEEESSSEEEEECC-CC------------------C-CEEEEECC--------------CSSCCC
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-Cc-c-------cCCcc-cccc-hhhccccc--------------cccccC
Confidence 9999997 6999999999999999999 65 1 26677 6666 45777765 234566
Q ss_pred c-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCccccc
Q 005340 232 T-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVS 310 (701)
Q Consensus 232 p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~ 310 (701)
| .++||+|++||++.|+++|++|++ +| ++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.
T Consensus 387 P~~~~~Lv~l~e~~~~I~~lLe~L~~-~~--~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~Pt~GpG~l~~ 459 (926)
T 1m2v_B 387 PRPNSMVVSLKACRQNIETLLTKIPQ-IF--QSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQR 459 (926)
T ss_dssp SCSSSSSEETTTTHHHHHHHHHHHHH-HT--SSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCC
T ss_pred CCcccccccHHHHHHHHHHHHHhhhh-hh--cCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCCCCCCCcccc
Confidence 6 388999999999999999999998 55 5678999999999999999999 78999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchh--
Q 005340 311 KNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAV-- 388 (701)
Q Consensus 311 ~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~-- 388 (701)
|+.+ .|++++||++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++
T Consensus 460 re~~----~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~ 535 (926)
T 1m2v_B 460 RNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPN 535 (926)
T ss_dssp CCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHH
T ss_pred cccc----cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhh
Confidence 9875 4677888866699999999999999999999999999999999999999999999999999999999764
Q ss_pred ----hHHHHHHHhccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCcEEE
Q 005340 389 ----FKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLC 464 (701)
Q Consensus 389 ----~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~ 464 (701)
|..++.+.+++ .+||+|+||||||+||+|++++||++.. +++.|+++++++++||+
T Consensus 536 d~~kf~~dl~~~Lt~-----~~gf~a~mrVR~S~glkv~~~~G~~~~~---------------~s~~~~l~~l~~d~s~a 595 (926)
T 1m2v_B 536 DIVKFSTEFAKHISM-----DFCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAFSTMPRDQSYL 595 (926)
T ss_dssp HHHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSBCS---------------STTEEEEEEECSSCCEE
T ss_pred HHHHHHHHHHHHhhh-----hhceeEEEEEEeCCCcEEEEeecCcccc---------------CcCceEeeccCCCCEEE
Confidence 44556666643 4799999999999999999999999852 35689999999999999
Q ss_pred EEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhh
Q 005340 465 LVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKME 544 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~~~~~~ 544 (701)
|+|++++++. ...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|||+++.+++
T Consensus 596 v~f~~~~~l~--------~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~---~l~~v~~s~Dqea~~~llar~av~~~~ 664 (926)
T 1m2v_B 596 FEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE---SLAEVYASADQLAIASFYNSKAVEKAL 664 (926)
T ss_dssp EEEEECSBCC--------SSEEEEEEEEEEEETTTEEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEeecccccC---CHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 9999999763 46899999999999999999999999999995 799999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhccccCCCC-------ccccCccccchHHHHHHhhcccCcCCCCCCh-hHHHHHHHHH
Q 005340 545 IEAEFDPIRWLDKALIHMCSRFGDYQKDSPS-------SFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP-DETAYFRMIL 616 (701)
Q Consensus 545 ~~~~~~~~~~l~~~lv~~~~~~~~y~~~~~~-------~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~-D~r~~~~~~l 616 (701)
+++..|+|+||+++|+++ ++.|||++++ +|+||++||+||+|||+|+||++|+ ++.+| |||+++++++
T Consensus 665 ~~~~~d~r~~L~~~li~i---l~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~~~l 740 (926)
T 1m2v_B 665 NSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNL 740 (926)
T ss_dssp HSCSHHHHHHHHHHHHHH---HHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHHHHH
Confidence 999999999999999999 6788887653 5999999999999999999999999 55555 9999999999
Q ss_pred ccCCHHHHHHhhcccceecccC----C---------------CCcccccccccccCCeEEEEeCCcEEEEEECCChh-HH
Q 005340 617 NRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA-QW 676 (701)
Q Consensus 617 ~~~~~~~~~~~iyP~l~~~~~~----~---------------~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~-~~ 676 (701)
+++++.+++.||||+||++|.. + .|++++||+++|.++|+||||+|..+++|+|++++ .|
T Consensus 741 ~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~l 820 (926)
T 1m2v_B 741 ESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPAL 820 (926)
T ss_dssp HHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGG
T ss_pred HcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHH
Confidence 9999999999999999999852 1 27899999999999999999999999999999994 56
Q ss_pred HHc
Q 005340 677 RKA 679 (701)
Q Consensus 677 ~~~ 679 (701)
+.+
T Consensus 821 l~d 823 (926)
T 1m2v_B 821 VFD 823 (926)
T ss_dssp GC-
T ss_pred HHH
Confidence 543
No 7
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=7.7e-123 Score=1087.36 Aligned_cols=618 Identities=18% Similarity=0.258 Sum_probs=522.3
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCCeEEEEccCCCCCCCCCCCCCCCCC-ccccCCCCceecCceEEEcCCceEEeC
Q 005340 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (701)
Q Consensus 6 ~~~~~~~iR~t~~~iP~~~~~~~~~~iPlg~~v~P~~~~~~~~~~vp~~~~~-p~RC~~C~ayiNp~~~~~~~g~~w~C~ 84 (701)
.||+|+|||+|||+||.+++++++++||||++|+||++..++++++|+++.+ |+||++||||+||||+|+.+|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 4999999999999999999999999999999999999976666788988764 999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCC------CCCCccccCCCccEEEeCCCCCC-CCCCCcEEEEEEECCCchhh---HHHHHHHHHH
Q 005340 85 FCFQRNHFPPHYASITD------DNLPAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEE---MSFLKSALSQ 154 (701)
Q Consensus 85 ~C~~~N~~p~~y~~~~~------~~~~pEL~~~~~tvey~~~~~~~-~~~~~p~~vFvIDvs~~~~~---l~~~~~~l~~ 154 (701)
||++.|++|++|+ ++. ..+|||| +++||||++|++.. .+..||+|+||||+|.++++ +++++++|++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL--~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~ 215 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEI--KCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 215 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHH--HCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCccc--cCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHH
Confidence 9999999999998 333 3466999 79999999995310 01179999999999999976 7899999999
Q ss_pred HhhcCCC---CcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHhHhhcccCCCCCCCccccCccCCCCcc
Q 005340 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (701)
Q Consensus 155 ~l~~lp~---~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (701)
+|+.||+ +++|||||||+.||||+++ ++ . .|+|++ .+| .+|++++| ++++|+
T Consensus 216 ~L~~Lp~~~~~~~VGlITfd~~V~~~~l~-~~-~-------~g~k~~-~~q-~~mlvv~d--------------l~d~f~ 270 (810)
T 1pcx_A 216 NLDSIPNHDERTRISILCVDNAIHYFKIP-LD-S-------ENNEES-ADQ-INMMDIAD--------------LEEPFL 270 (810)
T ss_dssp HTTTSCCTTSCCEEEEEEESSSEEEEECC-CG-G-------GC---------CEEECCCC--------------TTCC--
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-cc-c-------cCcccc-ccc-hhhccccc--------------cccccC
Confidence 9999997 6999999999999999998 54 1 267775 455 45777765 234566
Q ss_pred c-ccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCccccc
Q 005340 232 T-IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVS 310 (701)
Q Consensus 232 p-~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~ 310 (701)
| .++||+|++||++.|+++|++|++ +| ++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.
T Consensus 271 P~~~~~Lv~l~e~~~~i~~lL~~L~~-~~--~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~pt~GpG~l~~ 343 (810)
T 1pcx_A 271 PRPNSMVVSLKACRQNIETLLTKIPQ-IF--QSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQR 343 (810)
T ss_dssp ---TTTSEETTTTHHHHHHHHHHHHH-HT--TTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCC
T ss_pred CCcccccccHHHHHHHHHHHHHhhhh-hc--cCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCCCCCCCCcccc
Confidence 6 388999999999999999999998 55 5678999999999999999999 78999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhccccceEEEeCCCCchh--
Q 005340 311 KNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAV-- 388 (701)
Q Consensus 311 ~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~-- 388 (701)
++.+ .|++++||++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++
T Consensus 344 r~~~----~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~ 419 (810)
T 1pcx_A 344 RNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPN 419 (810)
T ss_dssp ------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHH
T ss_pred cccc----cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhH
Confidence 9875 4678888877799999999999999999999999999999999999999999999999999999998763
Q ss_pred ----hHHHHHHHhccCccCCcceeeEEEEEEecCCceEEEEEcCCcccCCCCCCcccccccCCCCCceEEecCCCCcEEE
Q 005340 389 ----FKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLC 464 (701)
Q Consensus 389 ----~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~ 464 (701)
|..++.+.+++ .+||+|+||||||+||+|++++||++.. +++.|+++++++++||+
T Consensus 420 d~~~f~~dl~~~l~~-----~~gf~a~mrVR~S~gl~v~~~~G~~~~~---------------~~~~~~l~~~~~d~s~~ 479 (810)
T 1pcx_A 420 DIVKFSTEFAKHISM-----DFCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAFSTMPRDQSYL 479 (810)
T ss_dssp HHHHHHHHHHHHHHC-----CCCEEEEEEEEECTTEEEEEEESSSBCS---------------SSSEEEESSCCSSCCEE
T ss_pred HHHHHHHHHHHHhhh-----hcceeEEEEEEcCCCeEEEEeecCcccc---------------CcCceEeecCCCCCEEE
Confidence 45556666643 4799999999999999999999999862 35689999999999999
Q ss_pred EEEEEecCCCCcccccCCCCeEEEEEEEEEEecCCcEEEEEEecceecccCCCCHHHHHhccCHHHHHHHHHHHHHHHhh
Q 005340 465 LVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKME 544 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~r~iRV~T~~l~vt~~~~~~~~~~~~~D~~a~~~~lak~~~~~~~ 544 (701)
|+|++++++. ...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|||+++.+++
T Consensus 480 v~f~~~~~l~--------~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~---~~~~v~~~~Dqea~~~llar~av~~~~ 548 (810)
T 1pcx_A 480 FEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE---SLAEVYASADQLAIASFYNSKAVEKAL 548 (810)
T ss_dssp EEEEECSCCC--------SSEEEEEEEEEEECTTSCEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEecCccccC---CHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 9999999763 46899999999999999999999999999995 799999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhccccCCCC-------ccccCccccchHHHHHHhhcccCcCCCCCCh-hHHHHHHHHH
Q 005340 545 IEAEFDPIRWLDKALIHMCSRFGDYQKDSPS-------SFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP-DETAYFRMIL 616 (701)
Q Consensus 545 ~~~~~~~~~~l~~~lv~~~~~~~~y~~~~~~-------~l~lp~~l~~lP~~~~~l~ks~~l~~~~~s~-D~r~~~~~~l 616 (701)
+++..|+|+||+++|+++ ++.|||++++ +|+||++||+||+|||+|+||++|+ ++.+| |||+|+++++
T Consensus 549 ~~~~~d~r~~l~~~li~i---l~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~~~~l 624 (810)
T 1pcx_A 549 NSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNL 624 (810)
T ss_dssp HTCHHHHHHHHHHHHHHH---HHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHHHHHH
Confidence 999999999999999999 6788887652 6999999999999999999999999 55555 9999999999
Q ss_pred ccCCHHHHHHhhcccceecccC----C---------------CCcccccccccccCCeEEEEeCCcEEEEEECCCh-hHH
Q 005340 617 NRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI-AQW 676 (701)
Q Consensus 617 ~~~~~~~~~~~iyP~l~~~~~~----~---------------~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v-~~~ 676 (701)
+++++.+++.||||+||++|.. + .|++++||.+.|.++|+||||+|..+++|+|+++ ++|
T Consensus 625 ~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l 704 (810)
T 1pcx_A 625 ESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPAL 704 (810)
T ss_dssp HHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHH
T ss_pred HcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHH
Confidence 9999999999999999999852 1 2789999999999999999999999999999999 556
Q ss_pred HHcCCC------------------CCCccHHHHHHhhhh
Q 005340 677 RKAGYH------------------NQPEHQVVNFVVDFD 697 (701)
Q Consensus 677 ~~~~~~------------------~~~e~~~~~~~~~~~ 697 (701)
+++-+. +.|..+.++++|+..
T Consensus 705 ~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~l 743 (810)
T 1pcx_A 705 VFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQL 743 (810)
T ss_dssp HHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHHHH
Confidence 643321 335556677776654
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.62 E-value=6.8e-17 Score=124.17 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=46.5
Q ss_pred CCCCccccCC--CCceecCceEEEcCCceEEeCCCCCCCCCCccccCCCCCCCC
Q 005340 54 LPYAPLRCRT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLP 105 (701)
Q Consensus 54 ~~~~p~RC~~--C~ayiNp~~~~~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~ 105 (701)
.+++|+||++ |+||||||++|+.++++|+|+||++.|++|++|+.+++.|++
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 4678999999 999999999999999999999999999999999876655443
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.16 E-value=8.3e-08 Score=106.28 Aligned_cols=262 Identities=13% Similarity=0.065 Sum_probs=172.1
Q ss_pred CcEEEEEEECCCchh----hHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHH
Q 005340 129 PPVFMFVVDTCIIEE----EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~----~l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (701)
+-.++||||+|.++. .++.++++++..++.++++.+||||+|++..+.+--. ..
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~--------------------- 134 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GG--------------------- 134 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SS---------------------
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-Cc---------------------
Confidence 346999999999987 3899999999999999999999999999877664211 00
Q ss_pred hHhhcccCCCCCCCccccCccCCCCcccccceeEeh-hhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhh
Q 005340 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA-FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (701)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (701)
.+.+. ...+..+.+.|+.|.. ...+.++.||..|..++.
T Consensus 135 -------------------------------~l~~~~~~~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l~ 174 (464)
T 4fx5_A 135 -------------------------------QLLRADYQSRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIFD 174 (464)
T ss_dssp -------------------------------SCEECSHHHHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHHT
T ss_pred -------------------------------ccccCCHHHHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHHh
Confidence 00000 1233455667777653 124789999999999998
Q ss_pred ccCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccC
Q 005340 284 ACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (701)
Q Consensus 284 ~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~ 363 (701)
.. +.....|+++++|.++.+. .....+ +.+....+|.|..|.++. ..+
T Consensus 175 ~~-~~~~~~IILLTDG~~~~~~----------------------------~~~l~~--~~~a~~~~i~i~tiGiG~-~~d 222 (464)
T 4fx5_A 175 TA-PSAIKHAILLTDGKDESET----------------------------PADLAR--AIQSSIGNFTADCRGIGE-DWE 222 (464)
T ss_dssp TC-TTSEEEEEEEESSCCTTSC----------------------------HHHHHH--HHHHHTTTCEEEEEEESS-SSC
T ss_pred cC-CCCCCEEEEEcCCCCCCCC----------------------------hHHHHH--HHHHhcCCCeEEEEEeCC-ccC
Confidence 42 2233578999999776431 001111 222345688888887754 467
Q ss_pred hhcchhhhccccceEEEeCCCCchhhHHHHHHHhccCccCCcceeeEEEEEEecCCceEEEEEc--CCcccCCCCCCccc
Q 005340 364 VAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIG--PCASLEKKGPLCSD 441 (701)
Q Consensus 364 l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G--~~~~~~~~~~~~sd 441 (701)
-..|..++..|||..++.++... +.+.|.+++.... ....-++.+++++.+|..+..+.. |.... ...
T Consensus 223 ~~~L~~IA~~tgG~~~~v~d~~~--L~~~f~~i~~~~~--s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~------l~~ 292 (464)
T 4fx5_A 223 PKELRKIADALLGTVGIIRDPAT--LAEDFREMTAKSM--GKEVADVALRLWAPKGATIRYVKQVSPNLAD------LSG 292 (464)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGG--HHHHHHHHHHHHH--TCCEEEEEEEEECCTTCEEEEEEEEESBCEE------CGG
T ss_pred HHHHHHHHHhCCCEEEEcCCHHH--HHHHHHHHHHHhh--chheeeeEEEEEeCCCcEEEEEEeecccccc------cCc
Confidence 88999999999999998876543 4444555553221 246899999999999998876532 11110 000
Q ss_pred cccc--CCCCCceEEecCCCCcEEEEEEEEecCCCCcccccCCCCeEE-EEEEEEEEecCCcE
Q 005340 442 AVVG--QGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQSTNNQFY-FQFLTYYQHNCGQM 501 (701)
Q Consensus 442 ~~~g--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-iQ~al~Yt~~~G~r 501 (701)
...+ -+....+.++.+ .+.+-.|.+++.-.... .+...- .+..+.|.++.|++
T Consensus 293 ~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~------~g~~~~~~~v~~~y~~~~~~~ 348 (464)
T 4fx5_A 293 MRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGN------IGQEKLAGRVQLVAKDAGGAT 348 (464)
T ss_dssp GCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCC------TTCEEEEEEEEEEEEETTEEE
T ss_pred ccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCC------CCceeEEEEEEEEEcCCCccc
Confidence 0011 123457888998 87777777777654321 133333 79999999998873
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.1e-06 Score=86.81 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=113.5
Q ss_pred CCcEEEEEEECCCchh-------hHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCC
Q 005340 128 VPPVFMFVVDTCIIEE-------EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVS 199 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~-------~l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~ 199 (701)
.+..++||||+|.++. .++.+++++...++.++ +.+||+|+|++..+..- +. .
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~-~----------------- 70 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT-S----------------- 70 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE-S-----------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC-C-----------------
Confidence 4678999999999975 58999999999999987 67999999987654431 11 0
Q ss_pred hHHHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH
Q 005340 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (701)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (701)
....+..+|+.|.... .....+.++.||..|.
T Consensus 71 -------------------------------------------~~~~~~~~l~~l~~~~-----~~~g~T~l~~al~~a~ 102 (218)
T 3ibs_A 71 -------------------------------------------DYISAKMFLESISPSL-----ISKQGTAIGEAINLAT 102 (218)
T ss_dssp -------------------------------------------CHHHHHHHHHTCCGGG-----CCSCSCCHHHHHHHHH
T ss_pred -------------------------------------------CHHHHHHHHHhcCccc-----CCCCCCcHHHHHHHHH
Confidence 1123445666665411 1123578999999999
Q ss_pred HHhhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 280 SLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 280 ~ll~~~~~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
..+... +.....|++++.|.++.| + ..+.+..+.+.||.|..+.++.
T Consensus 103 ~~l~~~-~~~~~~ivllTDG~~~~~-------~-------------------------~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 103 RSFTPQ-EGVGRAIIVITDGENHEG-------G-------------------------AVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp TTSCSC-SSCCEEEEEEECCTTCCS-------C-------------------------HHHHHHHHHTTTEEEEEEEESC
T ss_pred HHHhhC-CCCCcEEEEEcCCCCCCC-------c-------------------------HHHHHHHHHhcCCEEEEEEecC
Confidence 988742 234467888999877654 0 1345667778899999888876
Q ss_pred C------------------------ccChhcchhhhccccceEEEeCC
Q 005340 360 D------------------------QVGVAELKVAVEKTGGLVVLSDS 383 (701)
Q Consensus 360 ~------------------------~~~l~~l~~l~~~TGG~v~~~~~ 383 (701)
+ ..+-..|..++..|||..++..+
T Consensus 150 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 150 PEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp TTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 3 56788899999999999888765
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4.5e-06 Score=84.83 Aligned_cols=147 Identities=18% Similarity=0.101 Sum_probs=102.8
Q ss_pred EEEEEEECCCchh-------hHHHHHHHHHHHhhc---CCCCcEEEEEEECC-EEEEEEcCCCCCCCCceeeecCCccCC
Q 005340 131 VFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVS 199 (701)
Q Consensus 131 ~~vFvIDvs~~~~-------~l~~~~~~l~~~l~~---lp~~~~VgiItf~~-~V~~~~l~~~~~~~~~~~v~~g~~~~~ 199 (701)
+.|||||+|.++. ++++.++++...++. ..+..+||||+|.. ..++.
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5699999999985 388888887777664 45668999999853 22221
Q ss_pred hHHHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH
Q 005340 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (701)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (701)
.|+......|...|+.|+. ...+.++.||+.|.
T Consensus 63 --------------------------------------~plT~D~~~il~aL~~l~~---------~G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 63 --------------------------------------STFTAEFGKILAGLHDTQI---------EGKLHMATALQIAQ 95 (268)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHH
T ss_pred --------------------------------------cCCcchHHHHHHHhhhcCc---------CCCCChHHHHHHHH
Confidence 1111122345566676654 12478999999999
Q ss_pred HHhhccCCCC-CcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEec
Q 005340 280 SLLGACVPGS-GARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (701)
Q Consensus 280 ~ll~~~~~~~-gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~ 358 (701)
..|+....+. .-||++|++|+-+. ..+-..++++++.++||.||++.++
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 9998654332 34799999974210 1234578999999999999999999
Q ss_pred CCccChhcchhhhccccc
Q 005340 359 LDQVGVAELKVAVEKTGG 376 (701)
Q Consensus 359 ~~~~~l~~l~~l~~~TGG 376 (701)
.+.-+-..|..++...+|
T Consensus 146 ~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCCHHHHHHHHHCS
T ss_pred CCccchHHHHHHHHHhcC
Confidence 766677778888776655
No 12
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.20 E-value=4e-05 Score=75.65 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=105.1
Q ss_pred CCcEEEEEEECCCchhh--HHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHH
Q 005340 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ 202 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~l---p~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~ 202 (701)
.+.-++||||+|.++.. ++.+++++...++.+ +++.+||+|+|++.++..- . . ..+
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~-~-~--~~~--------------- 74 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV-K-V--SEA--------------- 74 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-C-T--TSG---------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-c-c--ccC---------------
Confidence 46789999999998754 788888888876654 5578999999998765431 1 0 000
Q ss_pred HHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHh
Q 005340 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (701)
Q Consensus 203 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (701)
.....+.+.+.|+.|... . ......+.+|.||..|...+
T Consensus 75 -------------------------------------~~~~~~~~~~~i~~l~~~-~---~~~~g~T~~~~aL~~a~~~l 113 (223)
T 1q0p_A 75 -------------------------------------DSSNADWVTKQLNEINYE-D---HKLKSGTNTKKALQAVYSMM 113 (223)
T ss_dssp -------------------------------------GGGCHHHHHHHHHTCCTT-S---CSCTTCCCHHHHHHHHHHHH
T ss_pred -------------------------------------CCCCHHHHHHHHHhcccc-c---ccCCCCccHHHHHHHHHHHh
Confidence 011123455667777541 0 01234679999999999998
Q ss_pred hccCC-------CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHH------HHHHHHcC
Q 005340 283 GACVP-------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL------SKQLVHQG 349 (701)
Q Consensus 283 ~~~~~-------~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~l------a~~~~~~~ 349 (701)
..... .....|++++.|.++.|.-. ....+-.+++ +..+.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 169 (223)
T 1q0p_A 114 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP------------------------ITVIDEIRDLLYIGKDRKNPREDY 169 (223)
T ss_dssp CCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT------------------------HHHHHHHHHHTTCSCBTTBCCGGG
T ss_pred hccccccccccccCCeEEEEECCCCCCCCCCh------------------------HHHHHHHHHHHhhhhhhhhcccCC
Confidence 73211 12235889999988876300 0000011111 02223445
Q ss_pred cEEEEEEecCCccChhcchhhhccccc--eEEEeCCCC
Q 005340 350 HVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFG 385 (701)
Q Consensus 350 isvDlf~~~~~~~~l~~l~~l~~~TGG--~v~~~~~f~ 385 (701)
|.|..+.++ ..++...|..++..||| .++..+++.
T Consensus 170 i~i~~igvG-~~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 170 LDVYVFGVG-PLVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp EEEEEEECS-SCCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred cEEEEEEec-CcCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 655555554 35788899999999999 777766543
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.19 E-value=3.6e-05 Score=74.99 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=106.8
Q ss_pred CCcEEEEEEECCCchhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.+.-.+||||+|.++..++.+++.++..++.+. ++.+||+|+|++..+.. .+. ..
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~-~~-------------------- 63 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN-TY-------------------- 63 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-TC--------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-Cc--------------------
Confidence 356789999999998788999999999998885 67999999999876542 111 00
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHH-h
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l-l 282 (701)
..+..+.+.|+.++.. .+ ..+.+|.||..|... +
T Consensus 64 --------------------------------------~~~~~~~~~i~~l~~~-----~G--~~T~~~~al~~a~~~~~ 98 (200)
T 1v7p_C 64 --------------------------------------KTKEEMIVATSQTSQY-----GG--DLTNTFGAIQYARKYAY 98 (200)
T ss_dssp --------------------------------------SSHHHHHHHHHHCCCC-----CC--SCCCHHHHHHHHHHHTT
T ss_pred --------------------------------------CCHHHHHHHHHhhhcc-----CC--CCCcHHHHHHHHHHhhc
Confidence 0112233555666431 11 247899999999985 4
Q ss_pred hcc--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 283 GAC--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 283 ~~~--~-~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
... . +.....|++++.|.++.+. -..+.+.++.+.||.|..+.++.
T Consensus 99 ~~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 99 SAASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 321 0 1122358889998765321 02345677778888877777632
Q ss_pred ----CccC----hhcchhhhccccce-EEEeCCCCc
Q 005340 360 ----DQVG----VAELKVAVEKTGGL-VVLSDSFGH 386 (701)
Q Consensus 360 ----~~~~----l~~l~~l~~~TGG~-v~~~~~f~~ 386 (701)
..++ ..+|..++..|||. ++..+++..
T Consensus 148 ~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 148 YLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred cccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 3345 57899999999885 566666654
No 14
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.18 E-value=6.1e-05 Score=73.54 Aligned_cols=163 Identities=9% Similarity=0.070 Sum_probs=105.8
Q ss_pred CCcEEEEEEECCCchh--hHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChH
Q 005340 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (701)
.+.-.+||||.|.+.. .++.+++.++..++.++ ++.+||+|+|++..+.. .+. ..
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~-~~------------------ 72 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK-DR------------------ 72 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT-CC------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC-CC------------------
Confidence 3567999999999864 48899999999999886 56899999999876543 111 00
Q ss_pred HHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHH-
Q 005340 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS- 280 (701)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~- 280 (701)
..++.+.+.|++|+. .. ...+.+|.||..|..
T Consensus 73 ----------------------------------------~~~~~~~~~i~~l~~-----~g--g~~T~~~~aL~~a~~~ 105 (202)
T 1ijb_A 73 ----------------------------------------KRPSELRRIASQVKY-----AG--SQVASTSEVLKYTLFQ 105 (202)
T ss_dssp ----------------------------------------CCHHHHHHHHHTCCC-----CC--BSCCCHHHHHHHHHHH
T ss_pred ----------------------------------------CCHHHHHHHHHhCcC-----CC--CCcCcHHHHHHHHHHH
Confidence 011234456666653 11 123789999999974
Q ss_pred HhhccCCC-CCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 281 LLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 281 ll~~~~~~-~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
++....+. ..-.|++++.|.++.|. . . -..+.++.+.+.||.|-.+.++
T Consensus 106 ~~~~~~r~~~~~~iillTDG~~~~~~-----~-----------------~-------~~~~~a~~l~~~gi~i~~igvG- 155 (202)
T 1ijb_A 106 IFSKIDRPEASRIALLLMASQEPQRM-----S-----------------R-------NFVRYVQGLKKKKVIVIPVGIG- 155 (202)
T ss_dssp TSSSCSCTTSEEEEEEEECCCCCGGG-----C-----------------T-------THHHHHHHHHHTTEEEEEEEES-
T ss_pred HhccCCCCCCCeEEEEEccCCCCccc-----h-----------------H-------HHHHHHHHHHHCCCEEEEEecC-
Confidence 44421111 22357888888765331 0 0 0123456666778766665554
Q ss_pred CccChhcchhhhcc-ccceEEEeCCCCc
Q 005340 360 DQVGVAELKVAVEK-TGGLVVLSDSFGH 386 (701)
Q Consensus 360 ~~~~l~~l~~l~~~-TGG~v~~~~~f~~ 386 (701)
+..+..+|..++.. +||.++..++|+.
T Consensus 156 ~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 156 PHANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp TTSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred CcCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 34688899999985 6889998887764
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.17 E-value=4.7e-05 Score=75.54 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=106.3
Q ss_pred CCcEEEEEEECCCchhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.+.-++||||+|.++..++.+++.++..++.+. ++.+||+|+|++.++..- +. ..
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~-~~-------------------- 79 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-KY-------------------- 79 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-TC--------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-CC--------------------
Confidence 356799999999998888999999999998874 678999999998765431 11 00
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHh-
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll- 282 (701)
. ....+.+.|+.+.. ..+ ..+.+|.||..|...+
T Consensus 80 ------------------------------~--------~~~~~~~~i~~l~~-----~gG--~~T~~~~aL~~a~~~l~ 114 (223)
T 2b2x_A 80 ------------------------------S--------STEEVLVAANKIVQ-----RGG--RQTMTALGIDTARKEAF 114 (223)
T ss_dssp ------------------------------C--------SHHHHHHHHTTCCC-----CCC--SSCCHHHHHHHHHHTTS
T ss_pred ------------------------------C--------CHHHHHHHHHhhhc-----cCC--CCccHHHHHHHHHHHhc
Confidence 0 01122234444432 111 1378899999999863
Q ss_pred hcc--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 283 GAC--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 283 ~~~--~-~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
... . +.....|+++++|.++.|. -..+.+..+.+.||.|..+.++.
T Consensus 115 ~~~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 115 TEARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecC
Confidence 310 0 1223457888998776441 02345667777888877777654
Q ss_pred CccC---------hhcchhhhcc-ccceEEEeCCCCc
Q 005340 360 DQVG---------VAELKVAVEK-TGGLVVLSDSFGH 386 (701)
Q Consensus 360 ~~~~---------l~~l~~l~~~-TGG~v~~~~~f~~ 386 (701)
+. + ...|..++.. |||.++..++++.
T Consensus 164 ~~-~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 164 HY-NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp GG-C---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred cc-ccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 32 2 4789999998 9999999887654
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.13 E-value=0.00015 Score=69.85 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=105.4
Q ss_pred CCcEEEEEEECCCchh--hHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChH
Q 005340 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (701)
.+.-.+||||.|.++. .++.+++.++..++.++ ++.+||+|+|++.++.. .+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------ 64 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-VV------------------ 64 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-CC------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecC-CC------------------
Confidence 3567899999999875 38899999999998875 35899999999876542 111 00
Q ss_pred HHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHH
Q 005340 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (701)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (701)
..++.+.+.++.++. . ...+.+|.||..|...
T Consensus 65 ----------------------------------------~~~~~~~~~i~~l~~-----~---~g~T~~~~aL~~a~~~ 96 (189)
T 1atz_A 65 ----------------------------------------PEKAHLLSLVDVMQR-----E---GGPSQIGDALGFAVRY 96 (189)
T ss_dssp ----------------------------------------CCHHHHHHHHHTCCC-----C---CCCCCHHHHHHHHHHH
T ss_pred ----------------------------------------CCHHHHHHHHHhCcC-----C---CCcchHHHHHHHHHHH
Confidence 011234455666643 1 2357899999999998
Q ss_pred hhccC---CCCCcE-EEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEe
Q 005340 282 LGACV---PGSGAR-ILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (701)
Q Consensus 282 l~~~~---~~~gg~-Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~ 357 (701)
+.... +....+ ++++++|.++.. ..+.+..+.+.||.|..+.+
T Consensus 97 l~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 97 LTSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp HHSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEc
Confidence 86321 111235 677888743211 02456667778887777766
Q ss_pred cCCccChhcchhhhccccc-eEEEeCCCCc
Q 005340 358 ALDQVGVAELKVAVEKTGG-LVVLSDSFGH 386 (701)
Q Consensus 358 ~~~~~~l~~l~~l~~~TGG-~v~~~~~f~~ 386 (701)
+. ..+..+|..++..++| .++...+|..
T Consensus 144 G~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 144 GD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 53 4678899999999875 5676666653
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.11 E-value=4.7e-05 Score=74.89 Aligned_cols=162 Identities=11% Similarity=0.031 Sum_probs=106.5
Q ss_pred CCcEEEEEEECCCchhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.+.-.+||||+|.++..++.+++.++..++.+. ++.+||+|+|++.++..- +. ..
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~-~~-------------------- 64 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-KY-------------------- 64 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-TC--------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-cc--------------------
Confidence 456789999999998888999999999988774 679999999998765431 11 00
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHh-
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll- 282 (701)
. ....+.+.|+.+.. ..+ ..+.+|.||..|...+
T Consensus 65 ------------------------------~--------~~~~~~~~i~~l~~-----~~G--~~T~~~~aL~~a~~~l~ 99 (213)
T 1pt6_A 65 ------------------------------S--------STEEVLVAAKKIVQ-----RGG--RQTMTALGTDTARKEAF 99 (213)
T ss_dssp ------------------------------S--------SHHHHHHHHHTCCC-----CCC--SSCCHHHHHHHHHHTTT
T ss_pred ------------------------------C--------CHHHHHHHHHhccC-----CCC--CcccHHHHHHHHHHHhc
Confidence 0 01122344455532 111 1368899999999864
Q ss_pred hcc--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 283 GAC--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 283 ~~~--~-~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
... . +.....|++++.|.++.|. -..+.+.++.+.||.|..+.++.
T Consensus 100 ~~~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 100 TEARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp SGGGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECH
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 311 0 1223458888998765431 12345677778888777776653
Q ss_pred Cc----cC----hhcchhhhcc-ccceEEEeCCCCc
Q 005340 360 DQ----VG----VAELKVAVEK-TGGLVVLSDSFGH 386 (701)
Q Consensus 360 ~~----~~----l~~l~~l~~~-TGG~v~~~~~f~~ 386 (701)
+. .+ ..+|..++.. |||.++..+++..
T Consensus 149 ~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 149 SYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 21 11 3688999998 8899999887754
No 18
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.09 E-value=0.00012 Score=69.62 Aligned_cols=155 Identities=13% Similarity=0.090 Sum_probs=97.2
Q ss_pred CCcEEEEEEECCCchhh-HHHHHHHHHHHhhc-CCCCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChHHHH
Q 005340 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~-l~~~~~~l~~~l~~-lp~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (701)
.+.-++||||.|.++.. ....++.+++.+.. +.++.+||+|+|++..+.. .+. .
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~-~---------------------- 61 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT-G---------------------- 61 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE-C----------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC-C----------------------
Confidence 46679999999998754 22223333333333 3367999999998765443 111 0
Q ss_pred hHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhc
Q 005340 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (701)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (701)
.+..+...|+.|... . + ...+.++.||..|...+..
T Consensus 62 --------------------------------------~~~~~~~~l~~l~~~-~--~---~g~T~~~~al~~a~~~l~~ 97 (182)
T 1shu_X 62 --------------------------------------DRGKISKGLEDLKRV-S--P---VGETYIHEGLKLANEQIQK 97 (182)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTC-C--C---CSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHhcccC-C--C---CCCchHHHHHHHHHHHHHh
Confidence 112333455555431 1 1 1257899999999999864
Q ss_pred cC-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCccC
Q 005340 285 CV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (701)
Q Consensus 285 ~~-~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~ 363 (701)
.. +.....|++++.|.++.+ ........+..+...||.|..+.++ ..+
T Consensus 98 ~~~~~~~~~iiliTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~ 146 (182)
T 1shu_X 98 AGGLKTSSIIIALTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL--DFE 146 (182)
T ss_dssp HTGGGSCEEEEEEECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCC
T ss_pred ccCCCCCeEEEEECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCC
Confidence 21 123467888888865421 1122345677788888887777665 567
Q ss_pred hhcchhhhccccceEEE
Q 005340 364 VAELKVAVEKTGGLVVL 380 (701)
Q Consensus 364 l~~l~~l~~~TGG~v~~ 380 (701)
-..|..++..|||..+.
T Consensus 147 ~~~L~~ia~~~~~~~~~ 163 (182)
T 1shu_X 147 QAQLERIADSKEQVFPV 163 (182)
T ss_dssp HHHHHHHSSSGGGEEES
T ss_pred HHHHHHHhCCCCceEEc
Confidence 88999999999875443
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.01 E-value=6.9e-05 Score=83.95 Aligned_cols=181 Identities=15% Similarity=0.086 Sum_probs=112.2
Q ss_pred CCcEEEEEEECCCchhh--HHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHH
Q 005340 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ 202 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~l---p~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~ 202 (701)
.+.-++||||.|.++.. ++.++++++..++.+ +++.+||||+|++..++. +. .. . +
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~-~~-l~-~-~--------------- 68 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVL-MS-VL-N-D--------------- 68 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEE-EC-TT-S-G---------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCcee-Ee-cc-C-C---------------
Confidence 45679999999998754 888999999998877 788999999999877653 11 00 0 0
Q ss_pred HHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHh
Q 005340 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (701)
Q Consensus 203 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (701)
.....+.+.+.|+.|+... ......+.++.||..|..++
T Consensus 69 -------------------------------------~~~~~~~~~~~l~~l~~~~----~~~~ggT~~~~aL~~a~~~l 107 (509)
T 2odp_A 69 -------------------------------------NSRDMTEVISSLENANYKD----HENGTGTNTYAALNSVYLMM 107 (509)
T ss_dssp -------------------------------------GGGCHHHHHHHHHTCCGGG----GTTCCSCCHHHHHHHHHHHH
T ss_pred -------------------------------------CCCCHHHHHHHHHhccccc----CCCCCCccHHHHHHHHHHHH
Confidence 0001234456667665411 01124678999999999998
Q ss_pred hccCC----------CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHH-----HHH
Q 005340 283 GACVP----------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQ-----LVH 347 (701)
Q Consensus 283 ~~~~~----------~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~-----~~~ 347 (701)
..... .....|+++++|.++.|. .. . ..-+.+... ..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~-----------------------~---~~~~~~~~~~~~~~~~~ 160 (509)
T 2odp_A 108 NNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP-----------------------K---TAVDHIREILNINQKRN 160 (509)
T ss_dssp HHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT-----------------------H---HHHHHHHHHTTCCSTTG
T ss_pred hhcccccccccccccccceEEEEECCCCccCCC-Ch-----------------------h---HHHHHHHHHhhcccccc
Confidence 52100 012357999999887662 00 0 000111110 114
Q ss_pred cCcEEEEEEecCCccChhcchhhhccccce--EEEeCCCCchhhHHHHHHHh
Q 005340 348 QGHVLDLFACALDQVGVAELKVAVEKTGGL--VVLSDSFGHAVFKDSVRRVF 397 (701)
Q Consensus 348 ~~isvDlf~~~~~~~~l~~l~~l~~~TGG~--v~~~~~f~~~~~~~~l~~~l 397 (701)
.|+.|..+.++.+..+..+|..++..+||. ++..+++ +.+.+-+.+++
T Consensus 161 ~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~--~~l~~~~~~i~ 210 (509)
T 2odp_A 161 DYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDT--KALHQVFEHML 210 (509)
T ss_dssp GGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSH--HHHHHHHHHHE
T ss_pred CceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCH--HHHHHHHHhhh
Confidence 566666666654448999999999999998 6665544 33434444444
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.99 E-value=1.2e-06 Score=84.71 Aligned_cols=174 Identities=15% Similarity=0.118 Sum_probs=103.4
Q ss_pred CCcEEEEEEECCCchh--hHHHHHHHHHHHhhcC-CCCcEEEEEEECC-EEEEEEcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~l-p~~~~VgiItf~~-~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.+..++||||+|.++. .++.+++++...++.+ +++.+||+|+|++ ..++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~--------------------------- 56 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV--------------------------- 56 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB---------------------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE---------------------------
Confidence 4668999999999973 4888999999988777 7889999999984 2110
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhh
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (701)
. .|+. .....+.+.|+.+... ..+.++.||..|..++.
T Consensus 57 --~------------------------~~~~-------~~~~~~~~~i~~l~~~---------g~T~~~~al~~a~~~l~ 94 (189)
T 2x31_A 57 --L------------------------LQPS-------RSLTQTKRQLQGLPGG---------GGTPLASGMEMAMVTAK 94 (189)
T ss_dssp --C------------------------TTTC-------SCHHHHHHHHHHCCCC---------BCCCCHHHHHHHHHHHH
T ss_pred --e------------------------cCCC-------CCHHHHHHHHhcCCCC---------CCCCHHHHHHHHHHHHH
Confidence 0 0100 0122345666776531 24678999999999997
Q ss_pred ccCC-CCCcEEEEEecCCCCCCCcccccCCC-CCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 005340 284 ACVP-GSGARILAFVGGPSTEGPAAIVSKNL-SEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (701)
Q Consensus 284 ~~~~-~~gg~Ii~F~~g~pt~GpG~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (701)
.... .....|++++.|.++.|++.-...+. ... +. . ++..+.+.||.|..+.++..
T Consensus 95 ~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~------~~----~-----------~~~~~~~~gi~v~~ig~g~~- 152 (189)
T 2x31_A 95 QARSRGMTPTIALLTDGRGNIALDGTANRELAGEQ------AT----K-----------VARAIRASGMPAVIIDTAMR- 152 (189)
T ss_dssp TCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCC------CE----E-----------EEECTGGGGSCCTHHHHHHS-
T ss_pred hccCCCCceEEEEECCCCCCCCCCccccccchhHH------HH----H-----------HHHHHHHcCCeEEEEecCCC-
Confidence 4221 23458899999999988531100000 000 00 0 01112223443333333323
Q ss_pred cChhcchhhhccccceEEEeCCCCchhhHHHHHHHh
Q 005340 362 VGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397 (701)
Q Consensus 362 ~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l 397 (701)
+...|..++..|||..++.++. ..+.|.+.+
T Consensus 153 -~~~~L~~iA~~~~G~~~~~~~~----~~~~~~~~~ 183 (189)
T 2x31_A 153 -PNPALVDLARTMDAHYIALPRA----TAHKMADVL 183 (189)
T ss_dssp -SCSSSCSTTTEEEESSTTTHHH----HHHHHHHHH
T ss_pred -CHHHHHHHHHhcCCeEEECCCc----chHHHHHHH
Confidence 6678999999999986654322 234455555
No 21
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.97 E-value=0.00012 Score=81.52 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=109.1
Q ss_pred cEEEEEEECCCchh--hHHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCChHHH
Q 005340 130 PVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 130 p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~l---p~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.-++||||+|.++. +++.++++++..++.+ +++.+||+|+|++..++.- +. .
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~-~--------------------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E--------------------- 59 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-S---------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-c---------------------
Confidence 45799999999875 4888888888888764 5578999999998665431 11 0
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhh
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (701)
+....++.+.+.|+.|.... ......+.+|.||..|..++.
T Consensus 60 -----------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 60 -----------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp -----------------------------------GGGGCHHHHHHHHHHCCGGG----SCCTTCCCHHHHHHHHHHHHC
T ss_pred -----------------------------------ccccCHHHHHHHHHhCcCcc----ccccCccCHHHHHHHHHHHhh
Confidence 00111334556777776411 012346889999999999984
Q ss_pred ccC-------CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEE
Q 005340 284 ACV-------PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFA 356 (701)
Q Consensus 284 ~~~-------~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~ 356 (701)
... +.....|+++++|.++.|.......+ .++...++. ..+..+.+.||.|..+.
T Consensus 101 ~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~---~~~~~~~~~---------------~~~~~~~~~~i~v~~ig 162 (497)
T 1rrk_A 101 WPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVID---EIRDLLYIG---------------KDRKNPREDYLDVYVFG 162 (497)
T ss_dssp CC------CGGGCEEEEEEEECSCCCSSSCTHHHHH---HHHHHTTCS---------------SCC-CCCGGGEEEEEEE
T ss_pred hhhccccccccccceEEEEEeCCCcccCCChhHHHH---HHHHHhhhh---------------cccccchhcCeeEEEec
Confidence 211 01335688999999887741110000 000000000 00111122366555554
Q ss_pred ecCCccChhcchhhhccccc--eEEEeCCCCchhhHHHHHHHh
Q 005340 357 CALDQVGVAELKVAVEKTGG--LVVLSDSFGHAVFKDSVRRVF 397 (701)
Q Consensus 357 ~~~~~~~l~~l~~l~~~TGG--~v~~~~~f~~~~~~~~l~~~l 397 (701)
++ +.++...|..++..+|| .++..+++ +.+.+-+.+.+
T Consensus 163 vG-~~~~~~~L~~iA~~~~g~~~~~~~~~~--~~l~~~~~~~i 202 (497)
T 1rrk_A 163 VG-PLVNQVNINALASKKDNEQHVCKVKDM--ECLEDVFYQMI 202 (497)
T ss_dssp CS-SSCCHHHHHHHSCCCTTCCCEEETTCH--HHHHHHHHHHS
T ss_pred CC-CccCHHHHHHHhcCCCCcceEEEeCCH--HHHhhhhhhcc
Confidence 43 34788999999999999 77776644 33444444444
No 22
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.97 E-value=9e-05 Score=76.33 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=107.3
Q ss_pred CCcEEEEEEECCCchhh--H-HHHHHHHHHHhhcCCC---CcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCCh
Q 005340 128 VPPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLPD---NSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSK 200 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~--l-~~~~~~l~~~l~~lp~---~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~ 200 (701)
.+.-++||||.|.++.. + +.++++++..++.++. +.+||||+|++.++.. .+. .. . .
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~~-~-----------~--- 83 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLH-SD-A-----------S--- 83 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEEC-SS-C-----------S---
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcc-cc-C-----------c---
Confidence 35679999999998763 5 8899999999998875 6899999999866433 333 11 0 0
Q ss_pred HHHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHH
Q 005340 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (701)
Q Consensus 201 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (701)
..+..+.+.|+.|....+ + ...+.+|.||..|..
T Consensus 84 -----------------------------------------~~~~~l~~~i~~l~~~~~--~---~G~T~~~~aL~~a~~ 117 (281)
T 4hqf_A 84 -----------------------------------------KNKEKALIIIKSLLSTNL--P---YGKTSLTDALLQVRK 117 (281)
T ss_dssp -----------------------------------------SCHHHHHHHHHHHHHTTG--G---GCSCCHHHHHHHHHH
T ss_pred -----------------------------------------cCHHHHHHHHHHHhhccC--C---CCCccHHHHHHHHHH
Confidence 001223345555542111 1 235789999999988
Q ss_pred HhhccCC--CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEec
Q 005340 281 LLGACVP--GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (701)
Q Consensus 281 ll~~~~~--~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~ 358 (701)
.+..... +....|+++++|.++.+ .-..+.+..+.+.||.|-.+.++
T Consensus 118 ~l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 118 HLNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp HHHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 8763210 12235788888865411 11234566777888777666665
Q ss_pred CCccChhcchhhhcc--ccc--eEEEeCCCCc
Q 005340 359 LDQVGVAELKVAVEK--TGG--LVVLSDSFGH 386 (701)
Q Consensus 359 ~~~~~l~~l~~l~~~--TGG--~v~~~~~f~~ 386 (701)
. ..+-..|..++.. +|| .++...+|+.
T Consensus 167 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 167 Q-GINVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp S-SCCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred C-ccCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 4 3677788888876 676 7888888865
No 23
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.95 E-value=7.3e-05 Score=72.28 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=103.4
Q ss_pred CCcEEEEEEECCCchhh--HHHHHHHHHHHhhcC-CCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHH
Q 005340 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~l-p~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (701)
.+.-++||||.|.++.. ++.+++.++..++.+ +++.+||+|+|++.++.. +. +....
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~-~~-------------------l~~~~ 63 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH-FT-------------------FKEFQ 63 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE-EC-------------------HHHHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE-Ee-------------------cCCcC
Confidence 35678999999998754 788888888888877 467899999999876543 11 00000
Q ss_pred hHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHH-Hhh
Q 005340 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLG 283 (701)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~ 283 (701)
+ +..+.+.|+.|+. . ...+.+|.||..|.. ++.
T Consensus 64 ~--------------------------------------~~~~~~~i~~l~~-----~---~g~T~~~~aL~~a~~~l~~ 97 (194)
T 1mf7_A 64 N--------------------------------------NPNPRSLVKPITQ-----L---LGRTHTATGIRKVVRELFN 97 (194)
T ss_dssp H--------------------------------------SCCHHHHHTTCCC-----C---CSCBCHHHHHHHHHHTTTS
T ss_pred C--------------------------------------HHHHHHHHHhCcC-----C---CCCchHHHHHHHHHHHhcC
Confidence 0 0012244555532 1 235789999999996 433
Q ss_pred ccC---CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCC
Q 005340 284 ACV---PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (701)
Q Consensus 284 ~~~---~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~ 360 (701)
... +.....|++++.|.++..+- . +.+.+.++.+.||.|..+.++.+
T Consensus 98 ~~~~~r~~~~~~iillTDG~~~~d~~----------------------~--------~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 98 ITNGARKNAFKILVVITDGEKFGDPL----------------------G--------YEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------GGGTHHHHHHTTEEEEEEEESGG
T ss_pred cccCCCCCCCeEEEEEcCCCCCCCch----------------------h--------hHHHHHHHHHCCCEEEEEEeccc
Confidence 110 01223588899998871110 0 01224566778888777766543
Q ss_pred c---cChhcchhhhccc-cceEEEeCCCCc
Q 005340 361 Q---VGVAELKVAVEKT-GGLVVLSDSFGH 386 (701)
Q Consensus 361 ~---~~l~~l~~l~~~T-GG~v~~~~~f~~ 386 (701)
. .+..+|..++..+ ||.++..+++..
T Consensus 148 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 148 FRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp GCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 2 1378899999986 588888887654
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.93 E-value=0.00021 Score=69.18 Aligned_cols=145 Identities=21% Similarity=0.181 Sum_probs=92.9
Q ss_pred cEEEEEEECCCchh-------hHHHHHHHHHHHhhc---CCCCcEEEEEEECCE-EEEEEcCCCCCCCCceeeecCCccC
Q 005340 130 PVFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL-VQVHELGGFGQIIPKTYVFKGSKDV 198 (701)
Q Consensus 130 p~~vFvIDvs~~~~-------~l~~~~~~l~~~l~~---lp~~~~VgiItf~~~-V~~~~l~~~~~~~~~~~v~~g~~~~ 198 (701)
-..+|+||+|.++. +++..++++...+.. ..+..+||||+|.+. -++-
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~--------------------- 61 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL--------------------- 61 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE---------------------
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe---------------------
Confidence 35799999999875 277777776654432 234479999998742 1111
Q ss_pred ChHHHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHH
Q 005340 199 SKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIA 278 (701)
Q Consensus 199 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A 278 (701)
.|+......+...|+.+.. . ..+++|.||..|
T Consensus 62 ---------------------------------------~plT~d~~~i~~~L~~l~~------~---g~t~l~~aL~~A 93 (192)
T 2x5n_A 62 ---------------------------------------STLTRDYGKFLSAMHDLPV------R---GNAKFGDGIQIA 93 (192)
T ss_dssp ---------------------------------------EEEESCHHHHHHHHTTCCC------C---SCCCHHHHHHHH
T ss_pred ---------------------------------------cCCCCCHHHHHHHHHcCCC------C---CCchHHHHHHHH
Confidence 1111223345566666543 1 257899999999
Q ss_pred HHHhhccCC-CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEe
Q 005340 279 ASLLGACVP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (701)
Q Consensus 279 ~~ll~~~~~-~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~ 357 (701)
..+|+.... ....||++|+.+.-+.. ..-..++++.+.+.||.|+++.+
T Consensus 94 ~~~l~~~~~~~~~~riiil~~~~~~~~------------------------------~~~~~~~a~~lk~~gi~v~~Ig~ 143 (192)
T 2x5n_A 94 QLALKHRENKIQRQRIVAFVGSPIVED------------------------------EKNLIRLAKRMKKNNVAIDIIHI 143 (192)
T ss_dssp HHHHHTCSCTTSEEEEEEEECSCCSSC------------------------------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHhccccCCCceEEEEEECCCCCC------------------------------chhHHHHHHHHHHCCCEEEEEEe
Confidence 999985321 23567888886521100 11246789999999999999999
Q ss_pred cCCccChhcchhhhccc
Q 005340 358 ALDQVGVAELKVAVEKT 374 (701)
Q Consensus 358 ~~~~~~l~~l~~l~~~T 374 (701)
+.+.-+-. |..+++.+
T Consensus 144 G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 144 GELQNESA-LQHFIDAA 159 (192)
T ss_dssp SCC---CH-HHHHHHHH
T ss_pred CCCCccHH-HHHHHHhc
Confidence 87665556 88888774
No 25
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.93 E-value=0.0002 Score=69.23 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=106.8
Q ss_pred CCcEEEEEEECCCchhh--HHHHHHHHHHHhhcC-CCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHH
Q 005340 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~l-p~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (701)
.+.-++||||+|.++.. ++..++.++..++.+ +++.+||+|+|++.++..- . +....
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~-~-------------------~~~~~ 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-------------------FEEFR 67 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEE-C-------------------HHHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEE-e-------------------cCccC
Confidence 45679999999998754 778899999999988 6889999999998765431 1 00000
Q ss_pred hHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH-HHhh
Q 005340 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-SLLG 283 (701)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~-~ll~ 283 (701)
. . .. +.+.|+.+.. + ...+.+|.||..|. .++.
T Consensus 68 ~---~------------------------~~-----------~~~~i~~l~~-----~---~g~T~~~~al~~a~~~l~~ 101 (198)
T 1n3y_A 68 R---S------------------------SN-----------PLSLLASVHQ-----L---QGFTYTATAIQNVVHRLFH 101 (198)
T ss_dssp H---C------------------------SS-----------GGGGGTTCCC-----C---CSCBCHHHHHHHHHTTTTS
T ss_pred C---H------------------------HH-----------HHHHHhcCcC-----C---CCCchHHHHHHHHHHHHhC
Confidence 0 0 00 0112223321 1 23578899999999 5444
Q ss_pred ccC---CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCC
Q 005340 284 ACV---PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (701)
Q Consensus 284 ~~~---~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~ 360 (701)
... +.....|++++.|.++.++- . +.+.+..+.+.||.|..+.++.+
T Consensus 102 ~~~~~r~~~~~~iillTDG~~~~~~~----------------------~--------~~~~~~~~~~~gi~i~~igvG~~ 151 (198)
T 1n3y_A 102 ASYGARRDAAKILIVITDGKKEGDSL----------------------D--------YKDVIPMADAAGIIRYAIGVGLA 151 (198)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------HHHHHHHHHHTTCEEEEEEESGG
T ss_pred cccCCCCCCceEEEEECCCCCCCCcc----------------------c--------HHHHHHHHHHCCCEEEEEEcccc
Confidence 210 12345689999998763320 0 13456677888998888877654
Q ss_pred c---cChhcchhhhccccceE-EEeCCCCc
Q 005340 361 Q---VGVAELKVAVEKTGGLV-VLSDSFGH 386 (701)
Q Consensus 361 ~---~~l~~l~~l~~~TGG~v-~~~~~f~~ 386 (701)
. .+...|..++..|||.. +..+++..
T Consensus 152 ~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 152 FQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp GGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred ccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 3 36789999999999974 66666543
No 26
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.78 E-value=0.00063 Score=64.83 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=98.0
Q ss_pred CcEEEEEEECCCchhh-HHHHHHHHHHHhhc-CCCCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChHHHHh
Q 005340 129 PPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~-l~~~~~~l~~~l~~-lp~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (701)
+.-++||||.|.++.. .+.+++.+++.+.. +.++.+||+|+|++..+.. .+.
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~------------------------- 61 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT------------------------- 61 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE-------------------------
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC-------------------------
Confidence 4568999999998754 55555555555554 3467899999998766443 111
Q ss_pred HhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhcc
Q 005340 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGAC 285 (701)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 285 (701)
+.++.+...|+.|+. .+ + ...+.+|.||..|...+...
T Consensus 62 ------------------------------------~~~~~~~~~i~~l~~-~~--~---~g~T~~~~al~~a~~~l~~~ 99 (185)
T 3n2n_F 62 ------------------------------------EDREQIRQGLEELQK-VL--P---GGDTYMHEGFERASEQIYYE 99 (185)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHT-CC--C---CSCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHhh-hc--C---CCCccHHHHHHHHHHHHhhc
Confidence 012234455666654 11 1 23578999999999977311
Q ss_pred C---CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCcc
Q 005340 286 V---PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362 (701)
Q Consensus 286 ~---~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~ 362 (701)
. ......|++++.|.++.++ ..--++.+..+.+.||.|..+.++ ..
T Consensus 100 ~~~~~~~~~~iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~~ 148 (185)
T 3n2n_F 100 NRQGYRTASVIIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--DF 148 (185)
T ss_dssp HTTCBCEEEEEEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--SC
T ss_pred cccCCCCCcEEEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--cC
Confidence 0 0122467888887653321 001134677788888777666665 67
Q ss_pred ChhcchhhhccccceEEEeCC
Q 005340 363 GVAELKVAVEKTGGLVVLSDS 383 (701)
Q Consensus 363 ~l~~l~~l~~~TGG~v~~~~~ 383 (701)
+-.+|..++.. +|.+|...+
T Consensus 149 ~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 149 NETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CHHHHTTTSSS-GGGEEEHHH
T ss_pred CHHHHHHHhCC-CCCeEEecc
Confidence 88899999965 577776543
No 27
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.77 E-value=0.00024 Score=72.55 Aligned_cols=163 Identities=13% Similarity=0.010 Sum_probs=105.0
Q ss_pred CcEEEEEEECCCchhh--H-HHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCChH
Q 005340 129 PPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~--l-~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (701)
+.-++||||.|.++.. + +.++++++..++.+. ++.+||||+|++.++..- +. .
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~------------------- 77 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLG-S------------------- 77 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecC-C-------------------
Confidence 5668999999998764 6 578999999998886 679999999998765431 11 0
Q ss_pred HHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHH
Q 005340 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (701)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (701)
.. +..+..+.+.|+.|+.... + ...+.+|.||..|..+
T Consensus 78 -~~------------------------------------~~~~~~~~~~i~~l~~~~~--~---~G~T~~~~AL~~a~~~ 115 (266)
T 4hqo_A 78 -GQ------------------------------------SIDKRQALSKVTELRKTYT--P---YGTTSMTAALDEVQKH 115 (266)
T ss_dssp -HH------------------------------------HHCHHHHHHHHHHHHHHCC--C---CSCCCHHHHHHHHHHH
T ss_pred -CC------------------------------------ccCHHHHHHHHHHhhhccC--C---CCCCCHHHHHHHHHHH
Confidence 00 0012234456666641001 1 1257899999999999
Q ss_pred hhcc-C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 282 LGAC-V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 282 l~~~-~-~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
+... . +.....|+++++|.++.+ .-..+.+.++.+.||.|-.+.++.
T Consensus 116 l~~~~~r~~~~~~iIllTDG~~~d~-------------------------------~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 116 LNDRVNREKAIQLVILMTDGVPNSK-------------------------------YRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp HHTTCSCTTSEEEEEEEECSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEECSS
T ss_pred HhhccccCCCCeEEEEEccCCCCCc-------------------------------hHHHHHHHHHHHCCCEEEEEecCc
Confidence 8732 0 112235788888865410 112356777888887777666653
Q ss_pred CccChhcchhhhccc--cc--eEEEeCCCC
Q 005340 360 DQVGVAELKVAVEKT--GG--LVVLSDSFG 385 (701)
Q Consensus 360 ~~~~l~~l~~l~~~T--GG--~v~~~~~f~ 385 (701)
..+-..|..++... || .++++.+|+
T Consensus 165 -~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 165 -GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp -SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred -ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 45666778888774 33 777776664
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.74 E-value=0.00059 Score=65.09 Aligned_cols=154 Identities=10% Similarity=0.143 Sum_probs=97.3
Q ss_pred CcEEEEEEECCCchhh--HHHHHHHHHHHhhcCC-CCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHh
Q 005340 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP-DNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~lp-~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (701)
+.-.+||||.|.+... ++.+++.++..++.+. ++.+||+|+|++.++.. +. +.+...
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~-------------------l~~~~~ 61 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD-------------------FSDYVK 61 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC-------------------HHHHHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec-------------------CcccCC
Confidence 4568999999998654 8889999999988884 56799999999876543 11 001000
Q ss_pred HhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHH-Hhhc
Q 005340 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLGA 284 (701)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~~ 284 (701)
+..+..+++.+.. . ...+.+|.||..|.. ++..
T Consensus 62 --------------------------------------~~~~~~~~~~i~~-~-------~g~T~~~~aL~~a~~~~~~~ 95 (179)
T 1mjn_A 62 --------------------------------------RKDPDALLKHVKH-M-------LLLTNTFGAINYVATEVFRE 95 (179)
T ss_dssp --------------------------------------HCCHHHHHTTCCC-C-------CBCCCHHHHHHHHHHHTSSG
T ss_pred --------------------------------------HHHHHHHHHhccc-C-------CCCChHHHHHHHHHHHhccc
Confidence 0113345565543 1 135789999999985 5442
Q ss_pred cCC---CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 005340 285 CVP---GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (701)
Q Consensus 285 ~~~---~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (701)
..+ ...-.|++++.|.++.|.- . + ...||.|-.+.++.+
T Consensus 96 ~~g~r~~~~~~iillTDG~~~~~~~-~------------------------~------------~~~~i~i~~igvG~~- 137 (179)
T 1mjn_A 96 ELGARPDATKVLIIITDGEATDSGN-I------------------------D------------AAKDIIRYIIGIGKH- 137 (179)
T ss_dssp GGTCCTTSEEEEEEEESSCCSSCSC-C------------------------G------------GGTTSEEEEEEESGG-
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCcc-h------------------------H------------HHCCCEEEEEEcccc-
Confidence 100 1113588899998875520 0 0 124666555555432
Q ss_pred cC----hhcchhhhccccc-eEEEeCCCCc
Q 005340 362 VG----VAELKVAVEKTGG-LVVLSDSFGH 386 (701)
Q Consensus 362 ~~----l~~l~~l~~~TGG-~v~~~~~f~~ 386 (701)
.+ ..+|..++..+|| .++..++|+.
T Consensus 138 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 138 FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 23 4789999999987 5777777754
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.56 E-value=0.00014 Score=85.45 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=104.7
Q ss_pred CcEEEEEEECCCchhh--HHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEE-cCCCCCCCCceeeecCCccCChHH
Q 005340 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQ 202 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~ 202 (701)
+.-++||||.|.++.. ++.++++++..++.+. .+.+||||+|++...+.- +. ..
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------- 302 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-EA------------------- 302 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-SG-------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeec-cc-------------------
Confidence 4469999999998743 8888888888887764 468999999998654431 11 00
Q ss_pred HHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHh
Q 005340 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (701)
Q Consensus 203 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (701)
. ...++.+.+.|++|+... ......+.+|.||..|...+
T Consensus 303 --~-----------------------------------~~~~~~~~~~i~~l~~~~----~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 303 --D-----------------------------------SSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp --G-----------------------------------GGCHHHHHHHHTTCCGGG----GSSSCCCCHHHHHHHHHHHH
T ss_pred --C-----------------------------------CcCHHHHHHHHHhccccc----ccCCCChHHHHHHHHHHHHH
Confidence 0 001223445666664210 01234678999999999998
Q ss_pred hccCC-CCC------cEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEE
Q 005340 283 GACVP-GSG------ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLF 355 (701)
Q Consensus 283 ~~~~~-~~g------g~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf 355 (701)
..... ..+ -.||++++|.+|.|..-.... +.++...++ ...++++.+.||.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~~~~~---------------~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 342 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLYI---------------GKDRKNPREDYLDVYVF 403 (741)
T ss_dssp CCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTC---------------SSCTTCCCGGGEEEEEE
T ss_pred hhhhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHHHhhc---------------ccccccccccCeeEEEE
Confidence 31100 111 248999999998874211100 000000000 01122334456655555
Q ss_pred EecCCccChhcchhhhccccce--EEEeCCCC
Q 005340 356 ACALDQVGVAELKVAVEKTGGL--VVLSDSFG 385 (701)
Q Consensus 356 ~~~~~~~~l~~l~~l~~~TGG~--v~~~~~f~ 385 (701)
.++ +.++-.+|..|+..+||. ++..++++
T Consensus 404 gvG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 404 GVG-PLVNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp ECS-SSCCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred eCC-CcCCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 443 347888999999999995 76666543
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.51 E-value=0.0012 Score=64.07 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=41.9
Q ss_pred CCcEEEEEEECCCchh--hHHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEE
Q 005340 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVH 177 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~l---p~~~~VgiItf~~~V~~~ 177 (701)
.+--.+|+||.|.++. .++.++++++..++.+ +++.+||+|+|++.++..
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~ 74 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVE 74 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEE
Confidence 4567999999999875 3889999999999888 578999999999876553
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.41 E-value=0.004 Score=59.11 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCcEEEEEEECCCchh--hHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEE-EcCCCCCCCCceeeecCCccCChH
Q 005340 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--~l~~~~~~l~~~l~~lp---~~~~VgiItf~~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (701)
.+.-++||||.|.++. +++.+++.++..++.++ ++.+||+|+|++.++.. .+. ..
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~~------------------ 76 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-SP------------------ 76 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-SG------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-CC------------------
Confidence 4678999999999874 48889999999888875 45899999999876543 111 00
Q ss_pred HHHhHhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHH
Q 005340 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (701)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (701)
. ...++.+.+.|+.++. +. ..+.+|.||..|...
T Consensus 77 --------------------------------~------~~~~~~~~~~i~~l~~-----~~---g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 77 --------------------------------N------AVDKQLAAHAVLDMPY-----KK---GSTNTSDGLKACKQI 110 (178)
T ss_dssp --------------------------------G------GSCHHHHHHHHHHCCC-----CC---CCCCHHHHHHHHHHH
T ss_pred --------------------------------C------ccCHHHHHHHHHhCCC-----CC---CCccHHHHHHHHHHH
Confidence 0 0012344456676652 11 257899999999997
Q ss_pred hhccC----CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEe
Q 005340 282 LGACV----PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (701)
Q Consensus 282 l~~~~----~~~gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~ 357 (701)
+.... +.....|++++.|.++.|. -..+.++++.+.||.|-.+.+
T Consensus 111 l~~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 111 LFTGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp HHHCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEEC
T ss_pred hcCcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEc
Confidence 63210 1223568888988765431 123456677778887776665
Q ss_pred cCCccChhcc
Q 005340 358 ALDQVGVAEL 367 (701)
Q Consensus 358 ~~~~~~l~~l 367 (701)
+ +.+|-..|
T Consensus 160 G-~~~~~~~l 168 (178)
T 2xgg_A 160 G-HYVAAALV 168 (178)
T ss_dssp C---------
T ss_pred C-CcCCHHHH
Confidence 4 33444444
No 32
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.07 E-value=0.001 Score=80.85 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred CcEEEEEEECCCchhh--HHHHHHHHHHHhhcCCCC-cEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHHHh
Q 005340 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLPDN-SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~--l~~~~~~l~~~l~~lp~~-~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (701)
+.-++||||.|.+... ++.+++.+++.++.+.++ .+||+|+|++.++..- . - . +..+
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-~-l--t----------------~~~~ 189 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-F--E----------------EFRR 189 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-C-S--H----------------HHHS
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-c-C--c----------------ccCC
Confidence 4568999999998653 899999999999998764 8999999998765541 1 0 0 1000
Q ss_pred HhhcccCCCCCCCccccCccCCCCcccccceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHHhhcc
Q 005340 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGAC 285 (701)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 285 (701)
. .. +...++.|+. . ...+.+|.||..|...+-..
T Consensus 190 ---~------------------------~~-----------l~~ai~~i~~-----~---gG~T~~g~AL~~a~~~lf~~ 223 (1095)
T 3k6s_A 190 ---S------------------------SN-----------PLSLLASVHQ-----L---QGFTYTATAIQNVVHRLFHA 223 (1095)
T ss_dssp ---C------------------------SC-----------GGGGTTTCCC-----C---CSCBCHHHHHHHHHTTTTST
T ss_pred ---H------------------------HH-----------HHHHHhhhhc-----c---cCCChHHHHHHHHHHhhccc
Confidence 0 00 0122333432 1 12578999999997744211
Q ss_pred CCCCCc------EEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCcEEEEEEecC
Q 005340 286 VPGSGA------RILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (701)
Q Consensus 286 ~~~~gg------~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~ 359 (701)
..|+ .|+++|+|.++..+ . -+.+.+.++.+.||.+-.+.++.
T Consensus 224 --~~g~R~~~~kviIllTDG~~~~d~----------------------~--------~~~~~a~~~r~~GI~i~aIGVG~ 271 (1095)
T 3k6s_A 224 --SYGARRDAAKILIVITDGKKEGDS----------------------L--------DYKDVIPMADAAGIIRYAIGVGL 271 (1095)
T ss_dssp --TTTCCSSSEEEEEEEESSCCBSCS----------------------S--------CHHHHHHHHHHHCEEECCEEBSS
T ss_pred --cccCCCCCCeEEEEEeCCCcCCCc----------------------h--------hHHHHHHHHHHCCCEEEEEeccc
Confidence 1222 47888888654211 0 12345677777887766666554
Q ss_pred C---ccChhcchhhhccccc-eEEEeCCCCc
Q 005340 360 D---QVGVAELKVAVEKTGG-LVVLSDSFGH 386 (701)
Q Consensus 360 ~---~~~l~~l~~l~~~TGG-~v~~~~~f~~ 386 (701)
+ ..+..+|..++..++| .++..++|+.
T Consensus 272 ~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 272 AFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp GGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred ccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 4 2689999999999887 6777777754
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.99 E-value=0.0039 Score=70.64 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=35.8
Q ss_pred cEEEEEEECCCchh--------hHHHHHHHHHHHhhc---CCCCcEEEEEEECCE
Q 005340 130 PVFMFVVDTCIIEE--------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL 173 (701)
Q Consensus 130 p~~vFvIDvs~~~~--------~l~~~~~~l~~~l~~---lp~~~~VgiItf~~~ 173 (701)
-..||+||+|.++. .|+.+++++...++. ..++.+||||+|++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 57899999999864 388888898888884 567789999998853
No 34
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=95.99 E-value=0.0048 Score=53.24 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=37.8
Q ss_pred cccceecccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCChh
Q 005340 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (701)
Q Consensus 629 yP~l~~~~~~~--~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~ 674 (701)
.|+||.++-.. ....|+++.++|.++.+||||+|..||+|+|+.+.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~ 49 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSN 49 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCC
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCC
Confidence 37788776432 24578899999999999999999999999999763
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.98 E-value=0.094 Score=62.11 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCcEEEEEEECCCchh--------hHHHHHHHHHHHhhcCC--CCcEEEEEEECCEE
Q 005340 128 VPPVFMFVVDTCIIEE--------EMSFLKSALSQAIDLLP--DNSLVGLITFGTLV 174 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~--------~l~~~~~~l~~~l~~lp--~~~~VgiItf~~~V 174 (701)
.+.-.|||||+|.++. +++.++++++..++.|. ++.+||||+|++.+
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a 279 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTI 279 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSB
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcc
Confidence 4557999999999874 25678888888887664 47899999999865
No 36
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.89 E-value=0.51 Score=53.64 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHHHhhccCCCC-CcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHH
Q 005340 268 TRCTGTALSIAASLLGACVPGS-GARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV 346 (701)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~-gg~Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~fY~~la~~~~ 346 (701)
..++|.||.+|..+++....+. .=+|++||+|--+.|. + .....-....|+.+.
T Consensus 140 ~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l~ 194 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDLR 194 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHHH
Confidence 5789999999999998542222 4588999997433321 0 111223467899999
Q ss_pred HcCcEEEEEEecCC
Q 005340 347 HQGHVLDLFACALD 360 (701)
Q Consensus 347 ~~~isvDlf~~~~~ 360 (701)
..||.|.++.++.+
T Consensus 195 ~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHTEEEEEEEBCCT
T ss_pred hcCcEEEEEecCCC
Confidence 99999999987654
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=94.55 E-value=2.6 Score=45.74 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=110.6
Q ss_pred CCcEEEEEEECCCchhh----HHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHH-
Q 005340 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ- 202 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~----l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~- 202 (701)
.|-=.+|++|+|.++.. +..+...|.+.|..+..+.|+||..|-+..- .|-.+. +.+.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v----------~P~~~~-------~p~~~ 172 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----------SPYMYI-------SPPEA 172 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSS----------TTTSCC-------CSHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecccc----------CccccC-------Chhhh
Confidence 45668999999999876 4455566666667777889999999864331 111000 0112
Q ss_pred HHhHhhcccCCCCCCCccccCccCCCCccc-c-cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH-
Q 005340 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDT-I-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA- 279 (701)
Q Consensus 203 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~- 279 (701)
++..-- . . +....| . -+...++.+....+.+.+..+.- . -+...|+..+-+-+++|+
T Consensus 173 l~nPc~--~--~------------~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~i-S---Gn~D~PEgg~dAl~qaavC 232 (472)
T 3t3p_B 173 LENPCY--D--M------------KTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-S---RNRDAPEGGFDAIMQATVC 232 (472)
T ss_dssp HHCTTT--T--T------------TSCCCCCCSEEEEEEEESCHHHHHHHHHHCCC-C---CCSSSSBCHHHHHHHHHHC
T ss_pred hcCCCc--c--c------------ccCCCCCcceeEeeccCCCHHHHHHHHhhccc-c---CCCCCCchHHHHHHHHhcc
Confidence 221110 0 0 000112 1 23356787777777788887654 2 123467777766677775
Q ss_pred -HHhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCcCCCCCCCCCCCcccchh----HHHHHHHHHHHHHcCcEE
Q 005340 280 -SLLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKA----VKFYDALSKQLVHQGHVL 352 (701)
Q Consensus 280 -~ll~~~~~~~gg~Ii~F~~g~p--t~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~fY~~la~~~~~~~isv 352 (701)
.-+. -+...-|+++|++-.+ -.|.|++...-..+..+-|-+- . ..+..+ ..-...|+.++.+++|.+
T Consensus 233 ~~~ig--WR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~--~--~~Y~~s~~~DYPSv~ql~~~l~e~nI~~ 306 (472)
T 3t3p_B 233 DEKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGS--D--NHYSASTTMDYPSLGLMTEKLSQKNINL 306 (472)
T ss_dssp HHHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCT--T--CBBTTTTTSCCCCHHHHHHHHHHTTCEE
T ss_pred hhhcC--CCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECC--C--CcccccccCCCCCHHHHHHHHHhcCccE
Confidence 3333 2345679988887766 4688887655444443444221 1 011111 112456777777787654
Q ss_pred EEEEecCCccChhcchhhhcc
Q 005340 353 DLFACALDQVGVAELKVAVEK 373 (701)
Q Consensus 353 Dlf~~~~~~~~l~~l~~l~~~ 373 (701)
||+......++ ...|+..
T Consensus 307 -IFAVt~~~~~~--Y~~L~~~ 324 (472)
T 3t3p_B 307 -IFAVTENVVNL--YQNYSEL 324 (472)
T ss_dssp -EEEECGGGHHH--HHHHHHT
T ss_pred -EEEEeccchhH--HHHHHHh
Confidence 77766654443 2344443
No 38
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=94.51 E-value=0.59 Score=53.65 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=109.3
Q ss_pred CCcEEEEEEECCCchhh-HH---HHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEE-MS---FLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~-l~---~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.|-=.+|++|+|.++.. ++ .+...|.+.|..+.++.|+||..|-+... +. .....| +.+
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~---~P-~~~~~p-------------~~~ 172 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV---SP-YMYISP-------------PEA 172 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSS---TT-TSCCCS-------------TTT
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecccc---CC-ccccCh-------------hhh
Confidence 45668999999999876 44 44445555556667889999999875441 11 100001 011
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCccc-c-cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH--
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDT-I-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (701)
. ..|-. ..+..-.| . -+-..++.+....+.+.+..+.. . -+...|+..+-+.+++|+
T Consensus 173 ---~------~~pc~------~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~i-s---gn~D~PE~g~dAl~qa~~c~ 233 (690)
T 3fcs_B 173 ---L------ENPCY------DMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-S---RNRDAPEGGFDAIMQATVCD 233 (690)
T ss_dssp ---T------TCTTS------SSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCC-C---CCSSSSBCHHHHHHHHHHCH
T ss_pred ---c------cCCCc------CCCCCCCCCccceeecccCCCHHHHHHHhhceec-c---CCCCCCchHHHHHHHHhhcc
Confidence 0 00000 00000112 1 12345777766666666666543 1 123456666666666664
Q ss_pred HHhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhHH----HHHHHHHHHHHcCcEEE
Q 005340 280 SLLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLD 353 (701)
Q Consensus 280 ~ll~~~~~~~gg~Ii~F~~g~pt--~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~----fY~~la~~~~~~~isvD 353 (701)
.-+. .+...-|++||++-.+- -|.|++...-..+..+-|-+. + .++..+.. --.+|+.++.+++|.+
T Consensus 234 ~~ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~--~--~~y~~s~~~DypSi~ql~~~l~~~~i~~- 306 (690)
T 3fcs_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGS--D--NHYSASTTMDYPSLGLMTEKLSQKNINL- 306 (690)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCT--T--CBBGGGGTSCCCCHHHHHHHHHHTTCEE-
T ss_pred cccC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeecC--C--CccccccccCCCCHHHHHHHHHHcCCeE-
Confidence 3333 23446799888877774 577776554433333333221 1 11222111 1466778888888844
Q ss_pred EEEecCCccChhcchhhhc-cccceEEEeC
Q 005340 354 LFACALDQVGVAELKVAVE-KTGGLVVLSD 382 (701)
Q Consensus 354 lf~~~~~~~~l~~l~~l~~-~TGG~v~~~~ 382 (701)
||+......++ ...|+. .+|+.+-...
T Consensus 307 ifavt~~~~~~--y~~l~~~i~~s~v~~l~ 334 (690)
T 3fcs_B 307 IFAVTENVVNL--YQNYSELIPGTTVGVLS 334 (690)
T ss_dssp EEEEEGGGHHH--HHHHHHHSTTCEEEEEC
T ss_pred EEEEeCCchhh--HHHHHhhcCCceeeeec
Confidence 55555554443 334443 3455554443
No 39
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=93.99 E-value=0.022 Score=49.89 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=38.7
Q ss_pred hcccceecccC--CCCcccccccccccCCeEEEEeCCcEEEEEECCChh
Q 005340 628 IQPSLISYSFH--SGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (701)
Q Consensus 628 iyP~l~~~~~~--~~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~ 674 (701)
-.|+||.+.-. -....|+++.++|.++.+||||+|..||+|+|+.+.
T Consensus 11 ~~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss 59 (114)
T 1svq_A 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSS 59 (114)
T ss_dssp CCEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCC
T ss_pred CCcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCC
Confidence 35788888632 234578999999999999999999999999999763
No 40
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=93.69 E-value=4.6 Score=44.03 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCcEEEEEEECCCchhh----HHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~----l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.|-=.+|++|+|.++.. +..+...|.+.|..+..+.|+||.+|-+..- + |-. ..+.+.+
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v---~-------P~~-------~~~p~~l 193 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV---L-------PFV-------STVPSKL 193 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS---T-------TTS-------CCCHHHH
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc---C-------Ccc-------cCCHHHh
Confidence 45668999999999876 4455566666667777889999999854331 1 100 0112333
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCccc-c-cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH--
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDT-I-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (701)
+..-. . .+....| . -+-..++.+....+.+.+..+.- . -+...|+..+.+-+++|+
T Consensus 194 ~~PC~--~--------------~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~i-S---GnlD~PEggfDAlmQaavC~ 253 (503)
T 3v4v_B 194 RHPCP--T--------------RLERCQSPFSFHHVLSLTGDAQAFEREVGRQSV-S---GNLDSPEGGFDAILQAALCQ 253 (503)
T ss_dssp HCCSS--C--------------SSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCC-C---CCSSSSBCHHHHHHHHHHCH
T ss_pred cCCCc--C--------------CCCCCCCCcceEEEEEecCCHHHHHHHHhhcCc-c---CCCCCCchHHHHHHHHhhcc
Confidence 22110 0 0000111 1 22346777655566666665543 1 123456777766677775
Q ss_pred HHhhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCcCCCCCCCCCCCcccchhH----HHHHHHHHHHHHcCcEEE
Q 005340 280 SLLGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV----KFYDALSKQLVHQGHVLD 353 (701)
Q Consensus 280 ~ll~~~~~~~gg~Ii~F~~g~p--t~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----~fY~~la~~~~~~~isvD 353 (701)
.-+. -+. ..|++||++-.+ ..|.|++...-..+..+-|-+ .+ ..+..+. .-...|+.++.+++|.+
T Consensus 254 ~~Ig--WR~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~--~~--~~Yt~s~~~DYPSv~ql~~kL~ennI~~- 325 (503)
T 3v4v_B 254 EQIG--WRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLD--SN--GLYSRSTEFDYPSVGQVAQALSAANIQP- 325 (503)
T ss_dssp HHHT--CCS-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBC--TT--SBBGGGGGSCCCCHHHHHHHHHHHTEEE-
T ss_pred cccC--CCc-ceEEEEEECCCCcCcCCCccccceecCCCCCeEEC--CC--CccccccccCCCCHHHHHHHHHhcCCeE-
Confidence 3343 233 679999887666 468888765544444444422 11 1121111 12456777788888843
Q ss_pred EEEecCCccChhcchhhhccccc
Q 005340 354 LFACALDQVGVAELKVAVEKTGG 376 (701)
Q Consensus 354 lf~~~~~~~~l~~l~~l~~~TGG 376 (701)
||+......++ ...|++.-.|
T Consensus 326 IFAVt~~~~~~--Y~~L~~~ip~ 346 (503)
T 3v4v_B 326 IFAVTSAALPV--YQELSKLIPK 346 (503)
T ss_dssp EEEECSSSHHH--HHHHHTTSTT
T ss_pred EEEEcccchhH--HHHHHHhCCC
Confidence 67776665544 3345544333
No 41
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=93.37 E-value=0.039 Score=58.25 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=37.7
Q ss_pred hcccceecccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCChh
Q 005340 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (701)
Q Consensus 628 iyP~l~~~~~~-~~--p~~~--~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~ 674 (701)
..|+||.++.. +. .+.+ +++-+.|.++.+||||+|..||||+|+.+.
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as 278 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQ 278 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 67999988643 21 2223 688889999999999999999999999874
No 42
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=93.20 E-value=0.054 Score=57.20 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.5
Q ss_pred hcccceecccC-CC--Cccc----ccccccccCCeEEEEeCC--cEEEEEECCChh
Q 005340 628 IQPSLISYSFH-SG--PEPA----LLDVAAIAADRILLLDSY--FTVVIFHGATIA 674 (701)
Q Consensus 628 iyP~l~~~~~~-~~--p~~~----~ls~~~l~~d~iyLlD~~--~~i~i~~G~~v~ 674 (701)
-.|+||.++.. +. ...+ +++.+.|.++.+||||+| ..||||+|+.+.
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~ 301 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKAN 301 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCC
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCC
Confidence 46999998742 32 2334 899999999999999999 999999999884
No 43
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=93.18 E-value=0.095 Score=51.89 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.4
Q ss_pred CCcEEEEEEECCCchhh-HHHHHHHHHHHhhcCC---CCcEEEEEEECC
Q 005340 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDLLP---DNSLVGLITFGT 172 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~-l~~~~~~l~~~l~~lp---~~~~VgiItf~~ 172 (701)
.+.-++|+||+|.++.. ++.++++++..+..++ +..+||+|+|++
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~ 181 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPG 181 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESC
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECC
Confidence 46778999999999765 9999999999998765 468999999984
No 44
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=93.13 E-value=0.053 Score=58.28 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=37.5
Q ss_pred hcccceecccC-CC--Ccc-cccccccccCCeEEEEeCCcEEEEEECCChh
Q 005340 628 IQPSLISYSFH-SG--PEP-ALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (701)
Q Consensus 628 iyP~l~~~~~~-~~--p~~-~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~ 674 (701)
..|+||.++.. +. .+. .+++-+.|.++.+||||+|..||||+|+.+.
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as 331 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN 331 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCC
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 58999988653 21 122 2588899999999999999999999999874
No 45
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.94 E-value=4.2 Score=43.79 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=112.7
Q ss_pred CCcEEEEEEECCCchhh----HHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~----l~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.|-=..|++|+|.++.+ +..+...|.+.|..+..+.|+||..|-+..- .|-.+. +.+.+
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v----------~P~~~t-------~p~~~ 183 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTV----------MPYIST-------TPAKL 183 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSS----------TTTSCC-------STTTT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecccc----------CCcccC-------ChHHh
Confidence 45568899999999876 4555566666677777889999998854320 111000 00111
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCccc-c-cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHHHH
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDT-I-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (701)
.. | ..... ...| . -+...++.+....+.+.+..+.- . -+...|+..+-+-+++|+--
T Consensus 184 ~n----------P------C~~~~-~c~~~f~fr~~l~LT~d~~~F~~~V~~~~i-s---Gn~D~PEgg~DAl~Qaavc~ 242 (454)
T 3vi3_B 184 RN----------P------CTSEQ-NCTTPFSYKNVLSLTNKGEVFNELVGKQRI-S---GNLDSPEGGFDAIMQVAVCG 242 (454)
T ss_dssp TC----------C------SCSSS-CCCCCCSEEEEEEEESCHHHHHHHHTTCCC-C---CCSSSSBCHHHHHHHHHHCH
T ss_pred cC----------C------CcCcc-CCCCCcceeeeeecCCCHHHHHHHHhhccc-c---CCCcCCchhHHHHHHHhccc
Confidence 00 0 00000 0111 1 22356787776677777777654 2 12346777776667777532
Q ss_pred hhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCcCCCCCCCCCCCcccc---hhHHHHHHHHHHHHHcCcEEEEEE
Q 005340 282 LGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYH---KAVKFYDALSKQLVHQGHVLDLFA 356 (701)
Q Consensus 282 l~~~~~~~gg~Ii~F~~g~p--t~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~---~~~~fY~~la~~~~~~~isvDlf~ 356 (701)
=+..-+. .-|+++|++-.+ ..|.|++...-..+..+-|-+ .. .|.. ....-...|++++.+++|-+ ||+
T Consensus 243 ~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~--~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFA 316 (454)
T 3vi3_B 243 SLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN--MYTMSHYYDYPSIAHLVQKLSENNIQT-IFA 316 (454)
T ss_dssp HHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT--EECCTTTSCCCCHHHHHHHHHHTTEEE-EEE
T ss_pred cccCCcc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC--CC--cccccccCCCCCHHHHHHHHHhcCCcE-EEE
Confidence 1111234 779998887766 479998876655554455533 11 1111 11112567788888887765 777
Q ss_pred ecCCccChhcchhhhccccc
Q 005340 357 CALDQVGVAELKVAVEKTGG 376 (701)
Q Consensus 357 ~~~~~~~l~~l~~l~~~TGG 376 (701)
.......++ ..|+++-+|
T Consensus 317 Vt~~~~~~Y--~~L~~~ip~ 334 (454)
T 3vi3_B 317 VTEEFQPVY--KELKNLIPK 334 (454)
T ss_dssp EEGGGHHHH--HHHHHHSTT
T ss_pred EcCccchHH--HHHHHhCCC
Confidence 766655543 344444333
No 46
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=92.92 E-value=0.057 Score=57.53 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=37.2
Q ss_pred hcccceecccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCChh
Q 005340 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (701)
Q Consensus 628 iyP~l~~~~~~-~~--p~~~--~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~ 674 (701)
..|+||.++.. +. .+.+ +++-+.|.++.+||||+|..||||+|+.+.
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as 319 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN 319 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 35899987643 21 1222 588899999999999999999999999884
No 47
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=92.42 E-value=2.3 Score=41.13 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=32.3
Q ss_pred CcEEEEEEECCCchhh-HHHHHHHHH---HHhhcCCCCcEEEEEEECCE
Q 005340 129 PPVFMFVVDTCIIEEE-MSFLKSALS---QAIDLLPDNSLVGLITFGTL 173 (701)
Q Consensus 129 ~p~~vFvIDvs~~~~~-l~~~~~~l~---~~l~~lp~~~~VgiItf~~~ 173 (701)
|-=.+|++|+|.++.. ++.+++.+. +.|+.+.++.|+||.+|-+.
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 4457899999999876 555555444 44455567899999998544
No 48
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=91.89 E-value=0.47 Score=53.11 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=24.3
Q ss_pred ccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 005340 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (701)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~G 304 (701)
.+.+|.||..|.... .....|+++++|..+.|
T Consensus 444 gT~i~~aL~~a~~~~-----~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 444 STDCALPMLWAQKTN-----TAADIFIVFTDCETNVE 475 (538)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEECCCCCSS
T ss_pred CCcHHHHHHHHHhcc-----CCCCEEEEEcCCCCCCC
Confidence 467889999988762 44588999999976654
No 49
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=89.53 E-value=0.21 Score=58.07 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=39.4
Q ss_pred HhhcccceecccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCChhH
Q 005340 626 VMIQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIAQ 675 (701)
Q Consensus 626 ~~iyP~l~~~~~~-~~--p~~~--~ls~~~l~~d~iyLlD~~~~i~i~~G~~v~~ 675 (701)
....|+||.++.. +. .+.+ +++-+.|.++.|||||+|..||||+|+.+..
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~ 664 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQD 664 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCH
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCH
Confidence 4568999998743 22 1222 5788899999999999999999999998853
No 50
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=86.52 E-value=2.4 Score=48.49 Aligned_cols=208 Identities=14% Similarity=0.142 Sum_probs=108.4
Q ss_pred CCcEEEEEEECCCchhh-H---HHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCCCCCceeeecCCccCChHHH
Q 005340 128 VPPVFMFVVDTCIIEEE-M---SFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (701)
Q Consensus 128 ~~p~~vFvIDvs~~~~~-l---~~~~~~l~~~l~~lp~~~~VgiItf~~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (701)
.|-=.+|++|+|.++.. + ..+...|.+.|..+.++.|+||.+|-+... +. .....| +.+
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~---~P-~~~~~p-------------~~~ 165 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTV---LP-FVNTHP-------------DKL 165 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSS---TT-SSCCSS-------------TTT
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecccc---CC-ccccCc-------------hhc
Confidence 46678999999999876 4 444456666677788899999999875431 11 100001 111
Q ss_pred HhHhhcccCCCCCCCccccCccCCCCccc-c-cceeEehhhhHHHHHHHHHHccCCCCCCCCCCCCccchhHHHHHHH--
Q 005340 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDT-I-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (701)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~l~~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (701)
+..- .. .+..-.| . -+...++.+....+.+.+..+.. . -+...|+..+-+.+++|+
T Consensus 166 ~~Pc--------~~--------~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~i-s---gn~D~PE~g~dAl~qa~vc~ 225 (687)
T 3k6s_B 166 RNPC--------PN--------KEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLI-S---GNLDAPEGGLDAMMQVAACP 225 (687)
T ss_dssp TCCC--------CS--------CCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCC-C---CCSSSSCCHHHHHHHHTTCH
T ss_pred cCCC--------CC--------CCCCcCCcccceeecccCCCHHHHHHHHhhccc-c---CCCCCCchHHHHHHHHhhcc
Confidence 1100 00 0000111 1 22345676665566677776653 1 123456666656666663
Q ss_pred HHhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhH---HHHHHHHHHHHHcCcEEEE
Q 005340 280 SLLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV---KFYDALSKQLVHQGHVLDL 354 (701)
Q Consensus 280 ~ll~~~~~~~gg~Ii~F~~g~pt--~GpG~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~fY~~la~~~~~~~isvDl 354 (701)
.-+. .+. .-|++||++-.+- .|.|+|...-.++..+-|-+ .. .|..... .--.+|+.++.+++|.+ |
T Consensus 226 ~~ig--Wr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~~--~y~~s~~~DyPS~~ql~~~l~~~~I~~-i 297 (687)
T 3k6s_B 226 EEIG--WRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--DN--LYKRSNEFDYPSVGQLAHKLAENNIQP-I 297 (687)
T ss_dssp HHHC--CCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--SS--BCSSGGGSCCCCGGGHHHHHHHTTCBC-C
T ss_pred cccC--Ccc-ceEEEEEECCCccccCCCccccceecCCCCccccC--CC--ccccccccCCCCHHHHHHHHHHcCCeE-E
Confidence 3443 234 7899998887664 57777655433333333321 10 1111111 01245677777788854 5
Q ss_pred EEecCCccChhcchhhhc-cccceEEEeC
Q 005340 355 FACALDQVGVAELKVAVE-KTGGLVVLSD 382 (701)
Q Consensus 355 f~~~~~~~~l~~l~~l~~-~TGG~v~~~~ 382 (701)
|+......++ ...|+. .+|+.+-...
T Consensus 298 favt~~~~~~--y~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 298 FAVTSRMVKT--YEKLTEIIPKSAVGELS 324 (687)
T ss_dssp EEECGGGHHH--HHHHHHHSSSCCEEECC
T ss_pred EEEeccchhh--HHHHHhhcCCceeeeec
Confidence 5554444443 334553 3445444443
No 51
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=83.56 E-value=0.64 Score=48.82 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=37.6
Q ss_pred cccceecccCC----CCcccccccccccCCeEEEEeCCcEEEEEECCCh
Q 005340 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI 673 (701)
Q Consensus 629 yP~l~~~~~~~----~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v 673 (701)
-|+||.+.-+. ....|+++.++|.++.+||||++..||+|+|+.+
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s 172 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 172 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCC
Confidence 57888887432 1346788999999999999999999999999976
No 52
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=82.84 E-value=3.8 Score=45.62 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=22.5
Q ss_pred ccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 005340 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (701)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~gg~Ii~F~~g~pt~G 304 (701)
.+.++.||..|.... .....|+++++|.-+.|
T Consensus 440 gTdi~~~l~~a~~~~-----~~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQER-----LDVDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhc-----CCCCEEEEEeCCCccCC
Confidence 456788887775543 34588999999866554
No 53
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=82.49 E-value=0.93 Score=48.08 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=37.8
Q ss_pred cccceecccCC----CCcccccccccccCCeEEEEeCC-cEEEEEECCCh
Q 005340 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSY-FTVVIFHGATI 673 (701)
Q Consensus 629 yP~l~~~~~~~----~p~~~~ls~~~l~~d~iyLlD~~-~~i~i~~G~~v 673 (701)
-|+||.+.-.. ....|+++.++|.++.+||||++ ..||+|.|+..
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~s 214 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGA 214 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTC
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCC
Confidence 57899886432 23468899999999999999999 99999999986
No 54
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=80.41 E-value=1 Score=47.27 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=37.3
Q ss_pred cccceecccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCCh
Q 005340 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI 673 (701)
Q Consensus 629 yP~l~~~~~~~--~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v 673 (701)
.|+||.+.-.. ...+|+++..+|.++.+||||++..||+|+|+.+
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s 181 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKS 181 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTC
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCC
Confidence 47888875322 2457889999999999999999999999999975
No 55
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=80.12 E-value=0.4 Score=37.78 Aligned_cols=19 Identities=26% Similarity=0.957 Sum_probs=16.9
Q ss_pred ceEEeCCCCCCCCCCcccc
Q 005340 79 KIWICPFCFQRNHFPPHYA 97 (701)
Q Consensus 79 ~~w~C~~C~~~N~~p~~y~ 97 (701)
-.|+|++|...|.+|.+|.
T Consensus 16 ~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFT 34 (76)
T ss_dssp EEEECTTTCCEEEESSCCC
T ss_pred cceECccccccCcCccccC
Confidence 5899999999999998774
No 56
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=74.79 E-value=0.64 Score=34.71 Aligned_cols=28 Identities=18% Similarity=0.606 Sum_probs=20.5
Q ss_pred CccccCCCCceecCceEEEcCCceEEeCCCCC
Q 005340 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 88 (701)
..--|.||++++.- ..+.-.|+|++|-.
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 45668999998765 33445899999954
No 57
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.31 E-value=1.2 Score=37.61 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=27.1
Q ss_pred CccccCCCCceecCceEEEcCCceEEeCCCCCCCCCCcccc
Q 005340 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYA 97 (701)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~N~~p~~y~ 97 (701)
.|.+|.+|+--+ .+.-++.-+|+.|+..|-.++.|.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 479999999764 233345689999999998876653
No 58
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=69.22 E-value=3 Score=48.37 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=37.9
Q ss_pred hcccceecccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCCh
Q 005340 628 IQPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI 673 (701)
Q Consensus 628 iyP~l~~~~~~~--~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v 673 (701)
-.|+||.+.-.. ....|+++.+||.++.+||||+|..||+|.|+..
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s 179 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTC
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCC
Confidence 357888876322 2457899999999999999999999999999965
No 59
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=67.65 E-value=2.1 Score=33.66 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=23.8
Q ss_pred CccccCCCCceecCceEEEcCCceEEeCCCCCCCCCC
Q 005340 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (701)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~N~~p 93 (701)
-++||. |+.+ .-.+.+.+.-.|+ ||..-.+.
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 478999 9996 4556667777898 99986654
No 60
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=67.15 E-value=18 Score=35.64 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHcCcEEEEEEecC-C---ccChhcchhhhccccceEEEeCC
Q 005340 340 ALSKQLVHQGHVLDLFACAL-D---QVGVAELKVAVEKTGGLVVLSDS 383 (701)
Q Consensus 340 ~la~~~~~~~isvDlf~~~~-~---~~~l~~l~~l~~~TGG~v~~~~~ 383 (701)
+.|+.+.+.||.|..+.+.. + .-|..+|..++..|||..+....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 45788889999999998843 2 44678999999999999998743
No 61
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=65.38 E-value=1.3 Score=47.39 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=0.0
Q ss_pred cccceecccCC----CCcccccccccccCCeEEEEeCCcEEEEEECCCh
Q 005340 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATI 673 (701)
Q Consensus 629 yP~l~~~~~~~----~p~~~~ls~~~l~~d~iyLlD~~~~i~i~~G~~v 673 (701)
.|+||.+.-.. ....|+++.++|.++.+||||++..||+|.|+..
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~s 226 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGC 226 (398)
T ss_dssp -------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCC
Confidence 46787775321 2357889999999999999999999999999975
No 62
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=60.90 E-value=15 Score=26.43 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=22.8
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 89 (701)
...|..|++ .-..++.....++|.-||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23467777778999999984
No 63
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=55.35 E-value=6.8 Score=31.78 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=22.2
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~N~ 91 (701)
...|..|++- ..+......|.|..|+....
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 4579999983 34455567999999999754
No 64
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=54.72 E-value=4.5 Score=31.33 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCccccCCCCceecCceEEEcCCceEEeCCCCC
Q 005340 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 88 (701)
..+..|.+|++--.|...-...|. ..||-|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 357899999999999999998887 99999975
No 65
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=47.27 E-value=4.2 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.1
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 88 (701)
|..|.+|++--.|..+-...|. -.||-|+-
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4579999999999988887776 88999984
No 66
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.42 E-value=13 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=18.8
Q ss_pred ccccCCCCc--eecCceEEEcCCceEEeCCCCCC
Q 005340 58 PLRCRTCRS--ILNPFSIVDFAAKIWICPFCFQR 89 (701)
Q Consensus 58 p~RC~~C~a--yiNp~~~~~~~g~~w~C~~C~~~ 89 (701)
--.|.+|++ ++-+ ...+|.|.=|+.+
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 456999998 4332 2468999999974
No 67
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.95 E-value=5.4 Score=28.49 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=5.7
Q ss_pred eEEeCCCCC
Q 005340 80 IWICPFCFQ 88 (701)
Q Consensus 80 ~w~C~~C~~ 88 (701)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666665
No 68
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.20 E-value=11 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCccccCCCCceecCceEEEcCCceEEeCCCCCCCCCC
Q 005340 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (701)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~N~~p 93 (701)
...-.|.+|++- .+...|.|.=||+.|--|
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 355679999996 334689999999986444
No 69
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=37.09 E-value=6.5 Score=32.14 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=19.1
Q ss_pred CccccCCCCceecCc-----------eEEEcCCceEEeCCCCC
Q 005340 57 APLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 57 ~p~RC~~C~ayiNp~-----------~~~~~~g~~w~C~~C~~ 88 (701)
..-+|..|+=...|- ..|.+--..|+|+.|+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 356788887555442 23333334588888886
No 70
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=35.54 E-value=12 Score=32.55 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=26.1
Q ss_pred cccCCCCceecCce----EEEcCC---ceEEeCCCCCCCCCC
Q 005340 59 LRCRTCRSILNPFS----IVDFAA---KIWICPFCFQRNHFP 93 (701)
Q Consensus 59 ~RC~~C~ayiNp~~----~~~~~g---~~w~C~~C~~~N~~p 93 (701)
.-|++|++++=|-. .+..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 36999999987764 334332 477899999988776
No 71
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=35.10 E-value=5.5 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.487 Sum_probs=25.5
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 88 (701)
...|.+|++--.|..+-...|. ..||-|+.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 4679999999999888888776 88999985
No 72
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=34.00 E-value=24 Score=21.12 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=20.8
Q ss_pred ccCCCCceecCceEEEcCCceEEeCCC
Q 005340 60 RCRTCRSILNPFSIVDFAAKIWICPFC 86 (701)
Q Consensus 60 RC~~C~ayiNp~~~~~~~g~~w~C~~C 86 (701)
.|-.|--+-|-||--+ -|+.|.|.=|
T Consensus 2 ~cvscv~fgngfcgdn-cgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDN-CGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECS-SSCEEECSCC
T ss_pred cceEeEeecCccccCC-cCCcccccCC
Confidence 3888989999998644 5689999876
No 73
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.00 E-value=8.9 Score=28.13 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=5.7
Q ss_pred ceEEeCCCCC
Q 005340 79 KIWICPFCFQ 88 (701)
Q Consensus 79 ~~w~C~~C~~ 88 (701)
..|+|+.|+.
T Consensus 34 ~dw~CP~Cg~ 43 (52)
T 1yk4_A 34 DDWVCPLCGA 43 (52)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3466666654
No 74
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.96 E-value=14 Score=35.36 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=17.8
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 89 (701)
.-+|..|+-.... ..-|+|++|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 5689999865442 234999999875
No 75
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.95 E-value=16 Score=29.01 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=20.1
Q ss_pred cccCCCCceecCceEEEcCCceEEeCCCCCC
Q 005340 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (701)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 89 (701)
..|..|+-=+--.|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 3455555555555655554468999999754
No 76
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.36 E-value=49 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=26.7
Q ss_pred CCCCCCCCccccCCCCceecCceEEEcCCceE-----EeCCCCCC
Q 005340 50 SMPILPYAPLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (701)
Q Consensus 50 ~vp~~~~~p~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~~ 89 (701)
..|.-.....+|..|+-.|.+--.+...++.| +|..|+..
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 51 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI 51 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCC
Confidence 34443345689999999886433344456677 89999864
No 77
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.11 E-value=10 Score=27.76 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=5.1
Q ss_pred eEEeCCCCCC
Q 005340 80 IWICPFCFQR 89 (701)
Q Consensus 80 ~w~C~~C~~~ 89 (701)
+|+|..|+..
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 4555555544
No 78
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.02 E-value=12 Score=29.23 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=6.4
Q ss_pred ceEEeCCCCC
Q 005340 79 KIWICPFCFQ 88 (701)
Q Consensus 79 ~~w~C~~C~~ 88 (701)
..|+|+.|+.
T Consensus 39 ddw~CP~Cga 48 (70)
T 1dx8_A 39 DSFMCPACRS 48 (70)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3577777766
No 79
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=28.77 E-value=20 Score=32.96 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=27.3
Q ss_pred ccccCCCCc-----eecCceEEEcC------CceEEeCCCCCCCCC
Q 005340 58 PLRCRTCRS-----ILNPFSIVDFA------AKIWICPFCFQRNHF 92 (701)
Q Consensus 58 p~RC~~C~a-----yiNp~~~~~~~------g~~w~C~~C~~~N~~ 92 (701)
-++|.+|+- |+|++-+.+.. +-.|+|-+|+..+.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 379999984 68888877743 237999999998875
No 80
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.68 E-value=13 Score=27.56 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=5.8
Q ss_pred ceEEeCCCCC
Q 005340 79 KIWICPFCFQ 88 (701)
Q Consensus 79 ~~w~C~~C~~ 88 (701)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 3466666665
No 81
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=27.07 E-value=13 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=0.0
Q ss_pred CceEEeCCCCCCCCCCcccc
Q 005340 78 AKIWICPFCFQRNHFPPHYA 97 (701)
Q Consensus 78 g~~w~C~~C~~~N~~p~~y~ 97 (701)
...|+|.+|+..|.+|.++.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 45899999999999997764
No 82
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.05 E-value=13 Score=30.02 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=6.2
Q ss_pred ceEEeCCCCC
Q 005340 79 KIWICPFCFQ 88 (701)
Q Consensus 79 ~~w~C~~C~~ 88 (701)
..|+|+.|+.
T Consensus 59 ddW~CPvCga 68 (81)
T 2kn9_A 59 DDWSCPDCGA 68 (81)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3466666665
No 83
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.73 E-value=13 Score=27.65 Aligned_cols=9 Identities=44% Similarity=1.217 Sum_probs=4.6
Q ss_pred eEEeCCCCC
Q 005340 80 IWICPFCFQ 88 (701)
Q Consensus 80 ~w~C~~C~~ 88 (701)
.|+|+.|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 355555554
No 84
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=24.50 E-value=20 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=26.0
Q ss_pred cccCCCCceecCce----EEEcCC---ceEEeCCCCCCCCCC
Q 005340 59 LRCRTCRSILNPFS----IVDFAA---KIWICPFCFQRNHFP 93 (701)
Q Consensus 59 ~RC~~C~ayiNp~~----~~~~~g---~~w~C~~C~~~N~~p 93 (701)
.-|++|++++=|-. .+..++ -.++|..||+.-.+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 36999999987763 334332 377899999988776
No 85
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.49 E-value=24 Score=30.47 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=19.8
Q ss_pred ccccCCCCceecCceEEEcCCceE-EeCCCCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIW-ICPFCFQRNH 91 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w-~C~~C~~~N~ 91 (701)
-.||.+|+..... ..... .|+-|+..+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 4789999876555 22456 7999988754
No 86
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.21 E-value=20 Score=23.24 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=10.9
Q ss_pred ceEEeCCCCCCCC
Q 005340 79 KIWICPFCFQRNH 91 (701)
Q Consensus 79 ~~w~C~~C~~~N~ 91 (701)
.-|.|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 3699999999884
No 87
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.02 E-value=16 Score=31.58 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.0
Q ss_pred ccccCCCCceecCceEEEcCCceEEeCCCCC
Q 005340 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (701)
Q Consensus 58 p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 88 (701)
+..|.+|++--.|...-+..| .+.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 467999999999999988877 599999985
No 88
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.94 E-value=35 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred CCccccCCCCceecCceEEEcCCceEEeCCCCCCCCC
Q 005340 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (701)
Q Consensus 56 ~~p~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~N~~ 92 (701)
..+.+|.+|+.|-= +=+|+.||.....
T Consensus 4 s~mr~C~~CgvYTL----------k~~CP~CG~~T~~ 30 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----------KEICPKCGEKTVI 30 (60)
T ss_dssp CCCEECTTTCCEES----------SSBCSSSCSBCBC
T ss_pred hhceeCCCCCCEec----------cccCcCCCCcCCC
Confidence 45789999998732 3469999987655
No 89
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=22.45 E-value=19 Score=29.26 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.9
Q ss_pred ceEEeCCCCCCCCCC
Q 005340 79 KIWICPFCFQRNHFP 93 (701)
Q Consensus 79 ~~w~C~~C~~~N~~p 93 (701)
+.|.|+||++.+.+.
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 579999999998764
No 90
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=22.27 E-value=15 Score=34.59 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=18.9
Q ss_pred CccccCCCCc-eecCceEEEcCCceEEeCCCC
Q 005340 57 APLRCRTCRS-ILNPFSIVDFAAKIWICPFCF 87 (701)
Q Consensus 57 ~p~RC~~C~a-yiNp~~~~~~~g~~w~C~~C~ 87 (701)
...+|++|++ |+...- +..+.++|++|+
T Consensus 133 ~l~~C~~Cgg~fv~~~~---~~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAH---QPVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESS---CCSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccC---CCCCCCcCCCCC
Confidence 4679999997 333322 234689999999
No 91
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.05 E-value=16 Score=33.25 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=18.3
Q ss_pred cccCCCCceecCceE-EEcCCceEEeCCCCCCCC
Q 005340 59 LRCRTCRSILNPFSI-VDFAAKIWICPFCFQRNH 91 (701)
Q Consensus 59 ~RC~~C~ayiNp~~~-~~~~g~~w~C~~C~~~N~ 91 (701)
..|..|+-.+---|. +......|.|.+|...-.
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 334444444444443 222346899999986543
No 92
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.52 E-value=83 Score=27.11 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=25.3
Q ss_pred CccccCCCCceecCceEEEcCCceE-----EeCCCCCC
Q 005340 57 APLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (701)
Q Consensus 57 ~p~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~~ 89 (701)
...+|..|+-.|-.-..+...++.| +|..|+..
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 4689999999887655556667777 78888865
No 93
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.99 E-value=32 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.5
Q ss_pred cccCCCCceecCceEEE------cCCceEEeCCCCCCCCCCccccC
Q 005340 59 LRCRTCRSILNPFSIVD------FAAKIWICPFCFQRNHFPPHYAS 98 (701)
Q Consensus 59 ~RC~~C~ayiNp~~~~~------~~g~~w~C~~C~~~N~~p~~y~~ 98 (701)
-||.-|-+|+.|...+. .+...=+|-+|+....+...|++
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC 75 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYC 75 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEEC
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceeh
Confidence 68999999999965543 24556789999977778888886
No 94
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.01 E-value=34 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.685 Sum_probs=19.1
Q ss_pred cccCCCCceecCceEEEc----CCceEEeCCCCCCCC
Q 005340 59 LRCRTCRSILNPFSIVDF----AAKIWICPFCFQRNH 91 (701)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~----~g~~w~C~~C~~~N~ 91 (701)
..|..|+-.+-.-|.... ....|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 345555444444444322 235899999987543
Done!