Query 005341
Match_columns 701
No_of_seqs 255 out of 761
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 3E-121 1E-125 1019.8 44.7 498 1-500 5-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 7E-116 2E-120 979.7 46.8 480 12-496 3-529 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 1.3E-50 4.4E-55 429.3 25.3 279 35-361 13-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 1E-50 3.5E-55 433.7 19.4 283 15-346 11-349 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.1E-48 3.8E-53 425.8 27.6 304 15-368 25-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 3.2E-48 1.1E-52 410.5 23.5 268 32-348 19-299 (323)
7 2b4v_A RNA editing complex pro 100.0 8.4E-40 2.9E-44 361.5 21.9 304 26-349 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 1.9E-37 6.4E-42 334.3 22.8 280 32-361 5-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 2E-36 6.9E-41 333.6 26.4 249 35-362 135-460 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 1.3E-10 4.4E-15 127.7 22.6 336 37-460 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.4E-08 4.8E-13 108.1 24.0 272 36-337 9-322 (349)
12 4at7_A Interleukin enhancer-bi 98.0 0.0012 4.3E-08 70.8 24.7 266 27-345 20-295 (364)
13 1no5_A Hypothetical protein HI 97.2 0.0011 3.7E-08 59.7 9.2 30 91-120 28-57 (114)
14 4at7_B NF90, interleukin enhan 97.2 0.021 7.3E-07 61.8 20.4 262 45-345 21-327 (383)
15 2rff_A Putative nucleotidyltra 97.0 0.0019 6.5E-08 58.3 8.2 53 55-119 10-62 (111)
16 1wot_A Putative minimal nucleo 96.9 0.0016 5.3E-08 57.2 6.6 48 59-119 7-54 (98)
17 1ylq_A Putative nucleotidyltra 96.7 0.0037 1.3E-07 54.6 7.7 28 91-118 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.6 0.04 1.4E-06 56.9 6.1 53 54-118 16-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.1 0.052 1.8E-06 55.1 5.8 29 91-119 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.8 0.41 1.4E-05 50.9 12.0 117 89-240 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.2 0.57 2E-05 49.8 10.3 116 89-240 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 91.7 0.71 2.4E-05 48.3 10.1 105 45-172 12-117 (287)
23 1jaj_A DNA polymerase beta-lik 88.7 0.63 2.1E-05 45.3 6.3 114 83-240 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 87.7 1.8 6.2E-05 46.4 9.7 51 89-141 175-225 (360)
25 1jms_A Terminal deoxynucleotid 84.3 5.2 0.00018 43.3 11.1 52 89-141 195-247 (381)
26 3b0x_A DNA polymerase beta fam 81.3 5 0.00017 45.3 9.9 107 90-241 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 71.8 7.4 0.00025 42.7 7.7 48 89-136 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 59.4 22 0.00075 39.7 8.5 48 89-136 233-289 (498)
29 2fcl_A Hypothetical protein TM 59.3 33 0.0011 32.8 8.6 71 89-168 32-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 51.6 20 0.00067 37.3 6.0 77 91-172 24-111 (294)
31 2w9m_A Polymerase X; SAXS, DNA 40.1 63 0.0021 36.5 8.3 94 93-241 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3e-121 Score=1019.85 Aligned_cols=498 Identities=42% Similarity=0.753 Sum_probs=451.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005341 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRG 80 (701)
Q Consensus 1 ~~~~~~~~s~~~~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g 80 (701)
|++..+.++++++++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~ 84 (514)
T 1q79_A 5 VTTQGSQQTQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKN 84 (514)
T ss_dssp --------------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444445556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecC
Q 005341 81 YSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDG 160 (701)
Q Consensus 81 ~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~~G 160 (701)
++++++.+++++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++|
T Consensus 85 ~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~g 163 (514)
T 1q79_A 85 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDG 163 (514)
T ss_dssp CCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETT
T ss_pred CchhhcccCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECC
Confidence 9999999999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred ceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCc
Q 005341 161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (701)
Q Consensus 161 I~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (701)
|+|||+||++++..+|+++++.|+++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||
T Consensus 164 i~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~ 243 (514)
T 1q79_A 164 IEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGF 243 (514)
T ss_dssp EEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTS
T ss_pred eeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCCCCCCCceEEeCCCCCCC
Q 005341 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCM 320 (701)
Q Consensus 241 LGG~swaLLVa~vcQl~Pnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~P~~ 320 (701)
||||+|+||||++||+|||+++++||.+||++|++|||++||++++++++.+++++|+|+.+++|+.|+|||+||++|++
T Consensus 244 lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~ 323 (514)
T 1q79_A 244 LGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323 (514)
T ss_dssp BCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CcccccCHhhHHHHHHHHHHHHHHHHHhhhcCcCccccccccchhhhcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHH
Q 005341 321 NSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTL 400 (701)
Q Consensus 321 Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~ 400 (701)
|+|+||+.+|+++|++||+||+++++++..++.+|++||+|++||.+|+|||+|+|++.+++++.+|.||||||||.|+.
T Consensus 324 N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~ 403 (514)
T 1q79_A 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVG 403 (514)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCceeeccCCCCCCCCCC----CCceeEEEEeeeeCC---CCccCCCceecchHHHHHHHHHHhhccccCCceE
Q 005341 401 MIERDTYGKLQCHPYPHEYVDTSK----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGME 473 (701)
Q Consensus 401 ~LE~~~~~~l~ahp~P~~f~~~~~----~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~v~eF~~~v~~~~~~~~~m~ 473 (701)
+||+.. ++..|||||++|.+... ..|.++|||||.++. ....+.+.++||+.++++|++.+++|..|+++|+
T Consensus 404 ~le~~~-~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~ 482 (514)
T 1q79_A 404 SLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMK 482 (514)
T ss_dssp HHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred HhccCC-CceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcE
Confidence 999853 44559999999987643 357889999999875 2222345679999999999999999999999999
Q ss_pred EEEEeeccCCCCCCcCCCCccccCCCc
Q 005341 474 ICVSHIRRKQIPPYVFPEGYKRTRHPR 500 (701)
Q Consensus 474 i~v~~vkr~~LP~~v~~~g~~~~~~~~ 500 (701)
|+|+|||+++||++||++|++|+|+.+
T Consensus 483 i~v~~vk~~~Lp~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 483 IAAMHVKRKQLHQLLPSHVLQKKKKHS 509 (514)
T ss_dssp EEEEEEEHHHHGGGCC-----------
T ss_pred EEEEEechHHCchhhcchhccCCCCCC
Confidence 999999999999999999999988754
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=6.9e-116 Score=979.69 Aligned_cols=480 Identities=39% Similarity=0.719 Sum_probs=454.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCe
Q 005341 12 PPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANA 91 (701)
Q Consensus 12 ~~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~ 91 (701)
++++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.++++
T Consensus 3 ~~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~ 82 (530)
T 2hhp_A 3 SQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGG 82 (530)
T ss_dssp -CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBC
T ss_pred CcccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeecc
Q 005341 92 LIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASIS 171 (701)
Q Consensus 92 ~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~ 171 (701)
+|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+|++++
T Consensus 83 ~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~ 161 (530)
T 2hhp_A 83 KIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLD 161 (530)
T ss_dssp EEEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECS
T ss_pred eEEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEeccc
Confidence 99999999999999999999999999999985 99999999999989999999999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHH
Q 005341 172 RLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 251 (701)
Q Consensus 172 ~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa 251 (701)
...+|+++++.++++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||
T Consensus 162 ~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa 241 (530)
T 2hhp_A 162 QPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVA 241 (530)
T ss_dssp SSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHH
T ss_pred cccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCCCCCCCceEEeCCCCCCCCcccccCHhhH
Q 005341 252 RVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTL 331 (701)
Q Consensus 252 ~vcQl~Pnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTl 331 (701)
++||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.|++|+.|+|||+||++|++|+|+||+.+|+
T Consensus 242 ~~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~ 321 (530)
T 2hhp_A 242 RICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK 321 (530)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHH
Confidence 99999999999999999999999999999999999888888899999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCccccccccchhhhcccEEEEEEEeC-ChhhhhhhhhhhHhhHHHHHHHhhhcccCce
Q 005341 332 RVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKL 410 (701)
Q Consensus 332 rvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l 410 (701)
++|++||+||+++|+++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++.
T Consensus 322 ~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~ 400 (530)
T 2hhp_A 322 KVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIK 400 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCce
Confidence 999999999999999998888999999999999999999999999998 9999999999999999999999998 55677
Q ss_pred eeccCCCCCCCCC-------------------------------------------CCCceeEEEEeeeeCCCCccCCCc
Q 005341 411 QCHPYPHEYVDTS-------------------------------------------KPCAHCAFFMGLQRKPGEVVQEGQ 447 (701)
Q Consensus 411 ~ahp~P~~f~~~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~ 447 (701)
.|||||++|.+.. ...+.++|||||.++.. +.++
T Consensus 401 ~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~ 477 (530)
T 2hhp_A 401 IAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKE 477 (530)
T ss_dssp EEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CC
T ss_pred eeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCc
Confidence 7999999984310 12356899999998753 2356
Q ss_pred eecchHHHHHHHHHHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCcccc
Q 005341 448 QFDIRGSVEEFKLSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRT 496 (701)
Q Consensus 448 ~~dl~~~v~eF~~~v~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~g~~~~ 496 (701)
++||+.++++|++.|++|.. |+++ |+ |.|+|||+++||++||++|++|+
T Consensus 478 ~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 478 KVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp CCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred eEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 89999999999999999997 8877 89 99999999999999999999774
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.3e-50 Score=429.34 Aligned_cols=279 Identities=20% Similarity=0.238 Sum_probs=227.6
Q ss_pred hHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeE
Q 005341 35 NRELEKFLVE--AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDA 112 (701)
Q Consensus 35 t~eL~~~L~~--~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 112 (701)
+.+|.+++.+ ..+.||+||.++|++++++|+++|+++. ++++|++||||++|+++|+||||+
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 76 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 76 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 3455555433 2467999999999999999999998532 368999999999999999999999
Q ss_pred EeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe-------cCceeeEEeeecccccccccccccccc
Q 005341 113 LCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-------DGLSIDLLYASISRLVVREDLDISDMS 185 (701)
Q Consensus 113 l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~-------~GI~iDLsfa~l~~~~ip~~ldl~~d~ 185 (701)
+|+.|.....+ .++..+...+.. ...+++.|.+|+||||||.+ .|+.||++|++
T Consensus 77 ~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~---------------- 137 (349)
T 4fh3_A 77 CVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN---------------- 137 (349)
T ss_dssp EEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------
T ss_pred EEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc----------------
Confidence 99999887764 666666555553 34678889999999999997 37899999876
Q ss_pred ccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhC------CC
Q 005341 186 VLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY------PN 259 (701)
Q Consensus 186 lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~------Pn 259 (701)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||++|||.. |+
T Consensus 138 ------------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~ 205 (349)
T 4fh3_A 138 ------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 205 (349)
T ss_dssp ------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred ------------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCch
Confidence 479999999999999999999999999999999999999999999999999999999952 32
Q ss_pred --------------------------------CChHHHHHHHHHHhh-cCCCCCceeeccccccccC--ccccc------
Q 005341 260 --------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAELG--FSVWD------ 298 (701)
Q Consensus 260 --------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~lg--~~vW~------ 298 (701)
.++++||.+||+||+ +|||++.|+.....++.+. .+.|.
T Consensus 206 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~ 285 (349)
T 4fh3_A 206 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 285 (349)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------
T ss_pred hhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccccc
Confidence 368999999999999 6999999886543332221 13343
Q ss_pred -CCCCCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHHHHHHHHHHHhhhcCcCccccccc
Q 005341 299 -PRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (701)
Q Consensus 299 -p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (701)
+..+..+..+.|+|+||++|++|+|++|+..+++.|+.||+||+++|++.. ...+|+.||+.
T Consensus 286 ~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 286 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp ---------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred CcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 333334456899999999999999999999999999999999999998743 34689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1e-50 Score=433.69 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=226.6
Q ss_pred CCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEE
Q 005341 15 QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIF 94 (701)
Q Consensus 15 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~ 94 (701)
.-|++++++.++|+++++ +.+|++++++ ++++.+|.++|++++++|++++++. .++++|+
T Consensus 11 ~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~----------------~p~~~v~ 70 (353)
T 2ikf_A 11 SSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV----------------DPLMRLY 70 (353)
T ss_dssp ------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH----------------CTTCEEE
T ss_pred cccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH----------------CCCcEEE
Confidence 469999999999999997 7899999976 5588999999999999999999863 2369999
Q ss_pred Eecccc-ccCcCCCCCeeEEeecCCccCc--------------hhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe-
Q 005341 95 TFGSYR-LGVHGPGADIDALCVGPSYVSR--------------EEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF- 158 (701)
Q Consensus 95 ~FGSy~-lGv~~p~SDID~l~v~P~~v~r--------------e~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~- 158 (701)
+||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++...+.+++.|.+|+||||||++
T Consensus 71 ~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~~ 150 (353)
T 2ikf_A 71 TFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGG 150 (353)
T ss_dssp EESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEECS
T ss_pred EecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEcC
Confidence 999998 9999999999999998753210 036788899999987778899999999999999999
Q ss_pred cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCcc
Q 005341 159 DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVT 238 (701)
Q Consensus 159 ~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~ 238 (701)
.||+|||+|++ .+|++.+++|..++..+++||+++++||+|||+||||+++.
T Consensus 151 ~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~ 202 (353)
T 2ikf_A 151 GAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVI 202 (353)
T ss_dssp SSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTST
T ss_pred CCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCC
Confidence 69999999986 47899999999999999999999999999999999999999
Q ss_pred -CccchHHHHHHHHHHHhhC------C------------------------CCChHHHHHHHHHHhh-cCCCCCceeecc
Q 005341 239 -GFLGGVNWALLVARVCQLY------P------------------------NAVPSMLVSRFFRVYT-MWRWPNPVMLCA 286 (701)
Q Consensus 239 -G~LGG~swaLLVa~vcQl~------P------------------------nas~~~LL~~FF~~Ys-~wdW~~pV~l~~ 286 (701)
|+||||+|+|||++|||.. | +.++++||.+||+||+ +|||.++|+...
T Consensus 203 gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~ 282 (353)
T 2ikf_A 203 GGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLN 282 (353)
T ss_dssp TCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSS
T ss_pred CCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcC
Confidence 9999999999999999852 2 2357999999999999 799999987532
Q ss_pred cccccc--CcccccCC------CCCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHHHHHHHHHH
Q 005341 287 IDEAEL--GFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 346 (701)
Q Consensus 287 i~~g~l--g~~vW~p~------~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~ 346 (701)
. .+.+ ..+.|++. .++.++.+.|+|+||++|.+|+|++|+.++++.|++||++|++++.
T Consensus 283 ~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 283 R-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp S-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred C-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 1211 12467642 2223456889999999999999999999999999999999998763
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.1e-48 Score=425.76 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=243.5
Q ss_pred CCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEE
Q 005341 15 QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIF 94 (701)
Q Consensus 15 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~ 94 (701)
-.|..++-|-....+..-+++.+|.++++. +.||+||.++|++++.+|+.+++++. ++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~ 86 (405)
T 4e8f_A 25 NLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELV 86 (405)
T ss_dssp -------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEE
T ss_pred cccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEE
Confidence 355556655555555566788899999986 67999999999999999999999752 268999
Q ss_pred EeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe---c----CceeeEEe
Q 005341 95 TFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF---D----GLSIDLLY 167 (701)
Q Consensus 95 ~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~---~----GI~iDLsf 167 (701)
+|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..++..|.+|+||||||.+ + ||+|||+|
T Consensus 87 ~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 87 AFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp EESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred EEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEee
Confidence 99999999999999999999998865553 6888999999875 6789999999999999995 4 99999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHH
Q 005341 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWA 247 (701)
Q Consensus 168 a~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 247 (701)
++ .+|++.+.+|..++..+++||+++++||+|||+||||+++.|+||||+|+
T Consensus 164 ~n----------------------------~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~ 215 (405)
T 4e8f_A 164 NN----------------------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYV 215 (405)
T ss_dssp SC----------------------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHH
T ss_pred cc----------------------------cchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHH
Confidence 86 25788889999888888999999999999999999999999999999999
Q ss_pred HHHHHHH-hh-----CCC--------------------------------CChHHHHHHHHHHhh-cCCCCCceeecccc
Q 005341 248 LLVARVC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAID 288 (701)
Q Consensus 248 LLVa~vc-Ql-----~Pn--------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~ 288 (701)
|||++|| |. +|+ .++++||.+||+||+ +|||.+.|+.....
T Consensus 216 lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~ 295 (405)
T 4e8f_A 216 LMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP 295 (405)
T ss_dssp HHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST
T ss_pred HHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecC
Confidence 9999999 73 232 468999999999999 89999988764422
Q ss_pred ccccC--cccccCCCC-------CCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHHHHHHHHHHHhhhcCcCccccc
Q 005341 289 EAELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALF 359 (701)
Q Consensus 289 ~g~lg--~~vW~p~~~-------~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf 359 (701)
.+.+. .+.|..... ..++.+.|+|+||++|.+|+|++|+..+++.|+.||+||++++.+... +.+|+.||
T Consensus 296 g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf 374 (405)
T 4e8f_A 296 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLF 374 (405)
T ss_dssp TCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGG
T ss_pred CcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHh
Confidence 22222 256875421 123568999999999999999999999999999999999999988542 57899999
Q ss_pred cccchhhhc
Q 005341 360 EPYLFFESY 368 (701)
Q Consensus 360 ~p~~Ff~~Y 368 (701)
+++++..+.
T Consensus 375 ~~~~~~~~~ 383 (405)
T 4e8f_A 375 EEAPIPPRR 383 (405)
T ss_dssp SCCCCC---
T ss_pred CcCCCcccc
Confidence 999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-48 Score=410.55 Aligned_cols=268 Identities=22% Similarity=0.289 Sum_probs=230.4
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCee
Q 005341 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (701)
Q Consensus 32 ~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (701)
-.+++||.+++.. +.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||
T Consensus 19 ~~L~~Ei~~f~~~--i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiD 80 (323)
T 3nyb_A 19 DWLTFEIKDFVAY--ISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDID 80 (323)
T ss_dssp HHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEE
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCce
Confidence 3477788888774 78999999999999999999998652 25789999999999999999999
Q ss_pred EEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe--cCceeeEEeeeccccccccccccccccccCC
Q 005341 112 ALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDLDISDMSVLND 189 (701)
Q Consensus 112 ~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~ 189 (701)
++|+.|.......+++..+.+.|++.+.+++++.|.+|+||||||++ .||+|||+|++
T Consensus 81 l~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~-------------------- 140 (323)
T 3nyb_A 81 CVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER-------------------- 140 (323)
T ss_dssp EEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC--------------------
T ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC--------------------
Confidence 99999886532246889999999998888999999999999999996 79999999986
Q ss_pred CCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCCC---------C
Q 005341 190 VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN---------A 260 (701)
Q Consensus 190 lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn---------a 260 (701)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||+++||++|+ .
T Consensus 141 --------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~ 212 (323)
T 3nyb_A 141 --------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKD 212 (323)
T ss_dssp --------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGG
T ss_pred --------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccc
Confidence 37899999999999999999999999999999999999999999999999999999999984 3
Q ss_pred ChHHHHHHHHHHhh-cCCCCCceeecccccc-ccCcccccCCCCCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHH
Q 005341 261 VPSMLVSRFFRVYT-MWRWPNPVMLCAIDEA-ELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQF 338 (701)
Q Consensus 261 s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g-~lg~~vW~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF 338 (701)
++++||.+||+||+ +|||++.++....... ......|... .+..+.+.|+|+||++|++|+++++. .++.|+.||
T Consensus 213 ~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~F 289 (323)
T 3nyb_A 213 NLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGSF--NIRDIKKAF 289 (323)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTCT--THHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccchH--HHHHHHHHH
Confidence 68999999999999 9999998775332111 1223567642 22234578999999999999999853 689999999
Q ss_pred HHHHHHHHHh
Q 005341 339 QYGNTICEEV 348 (701)
Q Consensus 339 ~Ra~~Il~~i 348 (701)
++|++++.+-
T Consensus 290 ~~A~~~L~~~ 299 (323)
T 3nyb_A 290 AGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=8.4e-40 Score=361.51 Aligned_cols=304 Identities=14% Similarity=0.181 Sum_probs=215.6
Q ss_pred CCCHHHHHh-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccc-cccC
Q 005341 26 GPTEADMQR-NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLGV 103 (701)
Q Consensus 26 ~Pt~~D~~~-t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy-~lGv 103 (701)
.|.+..+.. ...+.+...+.. +++++.+.|+.++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 455544432 334444444433 788999999999999999999874 36999999999 7999
Q ss_pred cCCCCCeeEEeecCCccCch-hhHH--HHHHHHHHhc-cC--CceEEEeccCccceEEEEec------------------
Q 005341 104 HGPGADIDALCVGPSYVSRE-EDFF--FILHNILAEM-EE--VTELQPVLDAHVPVMKFKFD------------------ 159 (701)
Q Consensus 104 ~~p~SDID~l~v~P~~v~re-~~Ff--~~l~~~L~~~-~~--v~~l~~V~~ArVPIIKf~~~------------------ 159 (701)
++|+||||++|+.+...... .... .++...|++. ++ +.++++|.+||||||||.+.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987322111 1111 2477888875 44 57899999999999999832
Q ss_pred ----------------------------------------Cc--eeeEEeeecccc-----ccccc--cc--cccccc--
Q 005341 160 ----------------------------------------GL--SIDLLYASISRL-----VVRED--LD--ISDMSV-- 186 (701)
Q Consensus 160 ----------------------------------------GI--~iDLsfa~l~~~-----~ip~~--ld--l~~d~l-- 186 (701)
|+ .+|++|.+.... ..|+. +. +.++-.
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 232 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRD 232 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccc
Confidence 22 245666642110 01110 00 000000
Q ss_pred ---------cCCCC-cccccccchhhHHHHHHHhCCCchh-HHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHh
Q 005341 187 ---------LNDVD-EPTVRSLNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQ 255 (701)
Q Consensus 187 ---------L~~lD-e~svrSLNG~Rvtd~Il~lVP~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQ 255 (701)
..++. +-|+. .+|++.+.+|..++-.+++ ||+|+++||+|||+||||+++.|+||||+|+|||++|+|
T Consensus 233 ~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ 311 (468)
T 2b4v_A 233 VLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLL 311 (468)
T ss_dssp ESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHH
Confidence 01111 23555 7999999999999888889 999999999999999999999999999999999999998
Q ss_pred hC-----------------CC------------CChHHHHHHHHHHhh-cCCCCCceeecccccccc--CcccccCCCCC
Q 005341 256 LY-----------------PN------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKNR 303 (701)
Q Consensus 256 l~-----------------Pn------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l--g~~vW~p~~~~ 303 (701)
.. |+ .++++||.+||+||+ +|||.+.++..... +.+ ..+.|+...+.
T Consensus 312 ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g-~~~~K~~~~w~~~~n~ 390 (468)
T 2b4v_A 312 VTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN-RRSYRSDIGWNFPQNK 390 (468)
T ss_dssp HTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSS-SCEEHHHHTCCCGGGE
T ss_pred hcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCC-cceecccccccccccc
Confidence 64 11 148999999999999 89999987743211 111 12457632211
Q ss_pred -CCCCCceEEeCCCCC----CCCcccccCHhhHHHHHHHHHHHHHHHHHhh
Q 005341 304 -RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (701)
Q Consensus 304 -~dr~~~MpIiTP~~P----~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~ 349 (701)
....+.|+|+||++| .+|+|++|+..+++.|+.||++|+++|+...
T Consensus 391 ~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 391 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp ETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 112357999999999 9999999999999999999999999998754
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.9e-37 Score=334.31 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=216.3
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCee
Q 005341 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (701)
Q Consensus 32 ~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (701)
-++++|+.++.+. +.||++|.+.|++++.+|++++++. + ++++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~--------------~--p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLA--------------V--NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHH--------------S--TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCcEEEEeeeccCCCCCCCCCee
Confidence 4678888888874 7899999999999999999999853 1 36999999999999999999999
Q ss_pred EEeecCCccC----chh---hHHHHHHHHHHh---ccCCceEEEeccCccceEEEEe--cCceeeEEeeecccccccccc
Q 005341 112 ALCVGPSYVS----REE---DFFFILHNILAE---MEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDL 179 (701)
Q Consensus 112 ~l~v~P~~v~----re~---~Ff~~l~~~L~~---~~~v~~l~~V~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~l 179 (701)
+++..+.... .+. .....+.+ |++ ..+++.+. |.+||||||||.+ .||+|||+|++
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~-L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn---------- 134 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTR-FGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGN---------- 134 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHH-HHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECC----------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHH-HHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecc----------
Confidence 9998865321 010 01111111 222 23666665 4599999999997 69999999987
Q ss_pred ccccccccCCCCcccccccchhhHHHHHHHhCCC-chhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCC
Q 005341 180 DISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258 (701)
Q Consensus 180 dl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P 258 (701)
.+|++.+.+|..+... .++||+|+++||+||++|||++++.|+||||+|+|||++|||..|
T Consensus 135 ------------------~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 135 ------------------IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred ------------------cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 3578888888888777 457999999999999999999999999999999999999999742
Q ss_pred ---CC------------------------------------ChHHH----HHHHHHHhhcCCCCCceee-cccccc-c--
Q 005341 259 ---NA------------------------------------VPSML----VSRFFRVYTMWRWPNPVML-CAIDEA-E-- 291 (701)
Q Consensus 259 ---na------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~l-~~i~~g-~-- 291 (701)
+. ++++| |.+||+||+.|||.+-|+. .++... .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 11 26777 9999999999999997664 332211 0
Q ss_pred -------------cCcccccCC------C----------------CCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHH
Q 005341 292 -------------LGFSVWDPR------K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (701)
Q Consensus 292 -------------lg~~vW~p~------~----------------~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~ 336 (701)
...+.|... . -.+..+.++.|++ +.-.+|+++.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 012456410 0 1134568899999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcCccccccc
Q 005341 337 QFQYGNTICEEVELNKAQWSALFEP 361 (701)
Q Consensus 337 EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (701)
||+||++|+.+=+ ++...+++|..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 356 EFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp HHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred HHHHHHHHHhccc-ccccHHHHhhh
Confidence 9999999997633 23566666654
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=333.56 Aligned_cols=249 Identities=16% Similarity=0.262 Sum_probs=194.8
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEe
Q 005341 35 NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALC 114 (701)
Q Consensus 35 t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~ 114 (701)
++++.++++. +-||++|.+.|..++.+|++++++. + ++++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~--------------f--P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAY--------------F--PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTT--------------S--TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 5566666664 6799999999999999999999852 1 36999999999999999999999988
Q ss_pred ecCCccC--------------------ch----hhHHHHHHHHHHhc-cCCceEEEeccCccceEEEEe--cCceeeEEe
Q 005341 115 VGPSYVS--------------------RE----EDFFFILHNILAEM-EEVTELQPVLDAHVPVMKFKF--DGLSIDLLY 167 (701)
Q Consensus 115 v~P~~v~--------------------re----~~Ff~~l~~~L~~~-~~v~~l~~V~~ArVPIIKf~~--~GI~iDLsf 167 (701)
..+.... .+ ..++..+.+.|++. +++.+++.|.+||||||||.+ .||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 6543210 00 13456677777763 678899999999999999999 499999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCc-cchHHH
Q 005341 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVNW 246 (701)
Q Consensus 168 a~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~sw 246 (701)
++ .+|++.+.+|..+...+++||+|+++||+|||+|||++++.|+ ||||+|
T Consensus 277 nn----------------------------~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NN----------------------------RIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SC----------------------------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CC----------------------------CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 87 3688999999999988999999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CChHHHHHHHHHHhhcCCCCCceeec
Q 005341 247 ALLVARVCQLYP-----N------------------------------------AVPSMLVSRFFRVYTMWRWPNPVMLC 285 (701)
Q Consensus 247 aLLVa~vcQl~P-----n------------------------------------as~~~LL~~FF~~Ys~wdW~~pV~l~ 285 (701)
+|||++|+|... + .++++||.+||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 999999999751 1 2469999999999999999986652
Q ss_pred cccccccCcccccCCCCCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHHHHHHHHHHHhhh------cCcCcc--c
Q 005341 286 AIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS--A 357 (701)
Q Consensus 286 ~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~------~~~~W~--~ 357 (701)
| ..|++.||+...++.++.|+++|..||+.-.. .+.+|. .
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ 455 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVS 455 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGG
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHH
Confidence 1 78999999999999999999999999985322 234574 5
Q ss_pred ccccc
Q 005341 358 LFEPY 362 (701)
Q Consensus 358 Lf~p~ 362 (701)
|+.|.
T Consensus 456 ll~~~ 460 (464)
T 3pq1_A 456 LLLPS 460 (464)
T ss_dssp GCC--
T ss_pred HhccC
Confidence 66553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.31 E-value=1.3e-10 Score=127.68 Aligned_cols=336 Identities=18% Similarity=0.186 Sum_probs=200.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCC-CCeeEEee
Q 005341 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALCV 115 (701)
Q Consensus 37 eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~v 115 (701)
-+.++|.. +-|+++|.++=..+.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 35566654 679999998877888888777775 1 258899999999999986 89999999
Q ss_pred cCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeeccccccccccccccccccCCCCcccc
Q 005341 116 GPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195 (701)
Q Consensus 116 ~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~sv 195 (701)
.|....++ ++=..-..++++.-. +. .+.-|.-|-+...+.|+++|++=|- ++.+..-+
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l~--~~-~~~ya~hpyV~~~f~g~~vDVVP~y----------~v~~g~~~-------- 123 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVLD--SY-EIRYAEHPYVHGVVKGVEVDVVPCY----------KLKEPKNI-------- 123 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHSS--SE-EEEESSSEEEEEEETTEEEEEEEEE----------CCSSSSCC--------
T ss_pred cCCCCCHH-HHHHHHHHHHHHHHH--Hh-hhhccCCceEEEEecceEEEEEEEE----------EccCCccc--------
Confidence 98876543 332222223332110 12 2456667888888899999998442 22211100
Q ss_pred cccchhhHHHHHHHhCCC-chhHHHHHHHHHHHHHHhCCCCC--ccCccchHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 005341 196 RSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRV 272 (701)
Q Consensus 196 rSLNG~Rvtd~Il~lVP~-~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaLLVa~vcQl~Pnas~~~LL~~FF~~ 272 (701)
..++--+..-.+++-. ...++..+|++|+|.|..|+|++ ..++++||.+=||++++ -+...+|..+
T Consensus 124 --~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~--- 192 (437)
T 1r89_A 124 --KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA--- 192 (437)
T ss_dssp --CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH---
T ss_pred --cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH---
Confidence 0122112233333322 11288999999999999999987 46789999999999994 1233333333
Q ss_pred hhcCCCCCceeeccccccccCcccccCCCCCCCCCCceEEeCCCCCCCCcccccCHhhHHHHHHHHHHHHHHHHHhhhcC
Q 005341 273 YTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNK 352 (701)
Q Consensus 273 Ys~wdW~~pV~l~~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~ 352 (701)
+ +|..++.+.- +. + . .....++.|+||.+|..|+|.++|..++..+..+-+... ..
T Consensus 193 -~--~w~~~~~Id~-~~---~-----~----~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~----- 248 (437)
T 1r89_A 193 -R--RWTRRTVIDV-AK---G-----E----VRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA----- 248 (437)
T ss_dssp -T--TCCTTEEEEG-GG---T-----E----EEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS-----
T ss_pred -H--HhCCCeEEec-CC---C-----c----ccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC-----
Confidence 3 5655665532 10 0 0 011357899999999999999999988887776554332 22
Q ss_pred cCcccccccc--------chh---h-hcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHHHhhhcccCceeec-cCCCCC
Q 005341 353 AQWSALFEPY--------LFF---E-SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCH-PYPHEY 419 (701)
Q Consensus 353 ~~W~~Lf~p~--------~Ff---~-~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ah-p~P~~f 419 (701)
.+ .++|.|. .+- . +=.+.+.|.....+.-+- ..-|-++--.+.|...||+.....+... .|
T Consensus 249 ps-~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~---- 322 (437)
T 1r89_A 249 PS-LGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSAFKA---- 322 (437)
T ss_dssp CC-GGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE----
T ss_pred cc-HHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEecccc----
Confidence 12 2233221 111 1 122456666655553222 3347777777788888888765544333 22
Q ss_pred CCCCCCCceeEEEEeeeeCCCC--ccCCCceecchHHHHHHHH
Q 005341 420 VDTSKPCAHCAFFMGLQRKPGE--VVQEGQQFDIRGSVEEFKL 460 (701)
Q Consensus 420 ~~~~~~~~~~~ffIGL~~~~~~--~~~~~~~~dl~~~v~eF~~ 460 (701)
.+. .|..++=|....-. ....|.++..+.-.+.|..
T Consensus 323 ~~~-----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 323 SEE-----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp CSS-----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred cCC-----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 221 34444444322211 1112334544556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.08 E-value=1.4e-08 Score=108.09 Aligned_cols=272 Identities=14% Similarity=0.137 Sum_probs=143.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCC-CCeeEEe
Q 005341 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALC 114 (701)
Q Consensus 36 ~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~ 114 (701)
..|.+|+.+ .+-|+.++...=..+++.|...+++-. .+ + ...+..-.+++.+|||+-|.++++ ||||+++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~-~---~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV 79 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQ-G---TADPVRVSKVVKGGSSGKGTTLRGRSDADLVV 79 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TC-C------CCEEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cc-c---ccCCcceEEEEEecCcCCCcccCCCCceeEEE
Confidence 357888863 578999888776677777777666421 11 1 000001137889999999999985 8999999
Q ss_pred ecCCccCch------hhHHHHHHHHHHhc---cCCc-eEEEe-ccCccc-eEEEEe------cCceeeEEeeecccccc-
Q 005341 115 VGPSYVSRE------EDFFFILHNILAEM---EEVT-ELQPV-LDAHVP-VMKFKF------DGLSIDLLYASISRLVV- 175 (701)
Q Consensus 115 v~P~~v~re------~~Ff~~l~~~L~~~---~~v~-~l~~V-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~i- 175 (701)
+.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+-|--....+
T Consensus 80 ~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~ 159 (349)
T 1px5_A 80 FLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWT 159 (349)
T ss_dssp EEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCC
T ss_pred EECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccc
Confidence 988643332 13444455555531 1222 22211 011245 366666 47999988653211100
Q ss_pred ----ccccccccccccCC----CCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHH
Q 005341 176 ----REDLDISDMSVLND----VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWA 247 (701)
Q Consensus 176 ----p~~ldl~~d~lL~~----lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 247 (701)
|+ .++..+ ++.. -+......-.--.-.+++.. ....|+.++|++|+|-++.+. ....+.+.||.+-
T Consensus 160 ~~~~~~-~~~y~~-li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lE 233 (349)
T 1px5_A 160 PGYKPN-PEIYVQ-LIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALE 233 (349)
T ss_dssp TTSCCC-HHHHHH-HHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHH
T ss_pred cccCCC-hHHHHH-HHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHH
Confidence 00 000000 0000 00000000001111233322 246899999999999998864 2234678999999
Q ss_pred HHHHHHHhhCCCC---ChHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCCCC-----------CCCceEEe
Q 005341 248 LLVARVCQLYPNA---VPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRD-----------KTHHMPII 313 (701)
Q Consensus 248 LLVa~vcQl~Pna---s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~vW~p~~~~~d-----------r~~~MpIi 313 (701)
+|+++.....+.. +..+-+..+|++-++|.- ..|. |..-.+..+ +...-.|+
T Consensus 234 LL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~-------------w~~~y~~~~~~~~~fl~~~l~~~~p~I~ 299 (349)
T 1px5_A 234 LLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIF-------------WEAYYDFTNPVVGRCMLQQLKKPRPVIL 299 (349)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEEC-------------CCSSCCSSSHHHHHHHHHHHTSSSCEEB
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-ccee-------------eeccccccchhHHhhhhhhhcCCCCeee
Confidence 9999988765543 467778888888887631 1121 221000000 01223699
Q ss_pred CCCCCCCCcccccCHhhHHHHHHH
Q 005341 314 TPAYPCMNSSYNVSTSTLRVMMDQ 337 (701)
Q Consensus 314 TP~~P~~Nsa~nVs~sTlrvI~~E 337 (701)
+|++|..|++.. +......+..|
T Consensus 300 DP~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 300 DPADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp CTTCTTCBTTCS-CHHHHHHHHHH
T ss_pred CCCCCCCcccCC-chhhHHHHHHH
Confidence 999999998877 76666666643
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.01 E-value=0.0012 Score=70.81 Aligned_cols=266 Identities=15% Similarity=0.068 Sum_probs=158.7
Q ss_pred CCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCC
Q 005341 27 PTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGP 106 (701)
Q Consensus 27 Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p 106 (701)
|.+.|-..++.|.+-= ..+.||++|..+=..++.+++.++...+. ..|.-+ ..=..|...|||.-|+++.
T Consensus 20 ~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll~ 89 (364)
T 4at7_A 20 PAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMTT 89 (364)
T ss_dssp CCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCCT
T ss_pred CCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCceec
Confidence 4555666666665533 36899999999988899999888887652 233211 1125789999999999998
Q ss_pred CC-CeeEEeecCCccCch--hhHHHHHHHHHHhccCCceEEE-eccCccceEEEEecCceeeEEeeeccccccccccccc
Q 005341 107 GA-DIDALCVGPSYVSRE--EDFFFILHNILAEMEEVTELQP-VLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDIS 182 (701)
Q Consensus 107 ~S-DID~l~v~P~~v~re--~~Ff~~l~~~L~~~~~v~~l~~-V~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl~ 182 (701)
|. |+|++|++..-.+.+ +....++.+-|+....-..+.. +.+|.+=| .-.+-.+=+.+.- .|.++.-.
T Consensus 90 G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I---~~~~~~v~i~It~-----tsp~lrk~ 161 (364)
T 4at7_A 90 GHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI---SSSDATVKILITT-----VPPNLRKL 161 (364)
T ss_dssp TCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE---ECSSCEEEEEEEE-----CHHHHHTC
T ss_pred CCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE---ecCCCcEEEEEEe-----CChhhccC
Confidence 76 899999987777653 1133445555554321111111 11111111 0011111122111 12222111
Q ss_pred cccccCCCCc-ccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCC---
Q 005341 183 DMSVLNDVDE-PTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP--- 258 (701)
Q Consensus 183 ~d~lL~~lDe-~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P--- 258 (701)
+ +-..||. .|..+|-.+|-|....+.... ...+.++|++|.-.++.. .++.|.+|++-+|+.+..-.-|
T Consensus 162 d--p~~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~ 234 (364)
T 4at7_A 162 D--PELHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQ 234 (364)
T ss_dssp C--TTTBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSS
T ss_pred C--hhHhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 1 1122443 577888889989888777765 667889999999666642 2357888766677776665544
Q ss_pred CCChHHHHHHHHHHhhc-CCCCCceeeccccccccCcccccCCCCCCCCCCceEEeCCCCC-CCCcccccCHhhHHHHHH
Q 005341 259 NAVPSMLVSRFFRVYTM-WRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYP-CMNSSYNVSTSTLRVMMD 336 (701)
Q Consensus 259 nas~~~LL~~FF~~Ys~-wdW~~pV~l~~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~P-~~Nsa~nVs~sTlrvI~~ 336 (701)
..+++.-+.++|+..+. +-.|.-. -|.+|+.+ ..++..+.+......|..
T Consensus 235 ~l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it~ 286 (364)
T 4at7_A 235 PLALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVCY 286 (364)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHHH
Confidence 46899999999999874 4333211 13345555 345555666555666665
Q ss_pred HHHHHHHHH
Q 005341 337 QFQYGNTIC 345 (701)
Q Consensus 337 EF~Ra~~Il 345 (701)
--|.+.+++
T Consensus 287 sAQ~~LRll 295 (364)
T 4at7_A 287 TAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.25 E-value=0.0011 Score=59.68 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.1
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCcc
Q 005341 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYV 120 (701)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~v 120 (701)
..|+.|||++-|-+.++||||++++.+...
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~ 57 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPL 57 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCC
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCC
Confidence 589999999999999999999999987543
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.22 E-value=0.021 Score=61.79 Aligned_cols=262 Identities=18% Similarity=0.185 Sum_probs=153.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC---c----------------cc---cccCCeEEEEeccc
Q 005341 45 AGLYESKEEDEKREQVLGRIRQIAK---DWVKELTRLRGYS---D----------------QM---VEDANALIFTFGSY 99 (701)
Q Consensus 45 ~~l~pS~EE~~~R~~Vl~~L~~ivk---~wv~~v~~~~g~~---~----------------~~---~~~~~~~I~~FGSy 99 (701)
..+||++||.+.=+.++..++..+| +|+.+-.+..+-. + .. ....=.-|.-.|+|
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3589999999999999999988776 6665422111100 0 00 00011345669999
Q ss_pred cccCcCCC-CCeeEEeecCCccCchhhHHHHHHHHHHh-ccCCc-----eEEEeccCccceEEEEecCceeeEEeeeccc
Q 005341 100 RLGVHGPG-ADIDALCVGPSYVSREEDFFFILHNILAE-MEEVT-----ELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (701)
Q Consensus 100 ~lGv~~p~-SDID~l~v~P~~v~re~~Ff~~l~~~L~~-~~~v~-----~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (701)
.-|+.+.| -+.|+|+++..-.+. .+...+.+.|.+ ...++ ....+.+|.+=|-.-....+.|=|.+.+.
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp-- 176 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSP-- 176 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECH--
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCc--
Confidence 99999964 599999999888775 466666555542 12221 12233344222110001134455555443
Q ss_pred ccccccc-------ccccccccCCCC-cccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCccchH
Q 005341 173 LVVREDL-------DISDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 244 (701)
Q Consensus 173 ~~ip~~l-------dl~~d~lL~~lD-e~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~ 244 (701)
.+++++ .+...+.-..|| ..|+.+|-.+|-|....+..........++|++|...++.- .++-|.+|
T Consensus 177 -~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~w 251 (383)
T 4at7_B 177 -VVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGW 251 (383)
T ss_dssp -HHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTH
T ss_pred -ccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHh
Confidence 112111 000011112234 35888888888777766666666667889999999766653 23567877
Q ss_pred HHHHHHHHHHhh-CCCCChHHHHHHHHHHhhcC-CCCC-ceeeccccccccCcccccCCCCCCCCCCceEEeCCCC--CC
Q 005341 245 NWALLVARVCQL-YPNAVPSMLVSRFFRVYTMW-RWPN-PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAY--PC 319 (701)
Q Consensus 245 swaLLVa~vcQl-~Pnas~~~LL~~FF~~Ys~w-dW~~-pV~l~~i~~g~lg~~vW~p~~~~~dr~~~MpIiTP~~--P~ 319 (701)
++=||+.+..-. ..+.++++-+.+||+..+.. --|. |+ |.||+. |.
T Consensus 252 aLELL~~~ai~s~~~~l~~~~afRRVLEllasG~lLp~~pg-----------------------------I~DPcEk~pt 302 (383)
T 4at7_B 252 PLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSG-----------------------------IYDPCEKEAT 302 (383)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTSTTSCC-----------------------------CBCTTCSSCC
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCcccCCCCC-----------------------------ccCCCCCCCc
Confidence 777777776643 12357899999999998853 2221 22 445666 65
Q ss_pred CCcccccCHhhHHHHHHHHHHHHHHH
Q 005341 320 MNSSYNVSTSTLRVMMDQFQYGNTIC 345 (701)
Q Consensus 320 ~Nsa~nVs~sTlrvI~~EF~Ra~~Il 345 (701)
.|.+ ..+......|..+-+.+.+++
T Consensus 303 ~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 303 DAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp BTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 5555 566666777777777666554
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.0019 Score=58.32 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005341 55 EKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (701)
Q Consensus 55 ~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (701)
..++++++.|++++....++ ++ .-..++.|||++-|-+.++||||++++.+..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~------~~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS------FP------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------CT------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH------cC------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 34677777777777665321 11 1267999999999999999999999988654
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.90 E-value=0.0016 Score=57.22 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005341 59 QVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (701)
Q Consensus 59 ~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (701)
++++.+++.+....++ .| -..++.|||++-|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~~----~~---------v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HG---------AVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HT---------CSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHH----cC---------CcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 5666666666554322 22 256999999999999999999999987653
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.73 E-value=0.0037 Score=54.62 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=26.3
Q ss_pred eEEEEeccccccCcCCC-CCeeEEeecCC
Q 005341 91 ALIFTFGSYRLGVHGPG-ADIDALCVGPS 118 (701)
Q Consensus 91 ~~I~~FGSy~lGv~~p~-SDID~l~v~P~ 118 (701)
..++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999998875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.63 E-value=0.04 Score=56.89 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCC
Q 005341 54 DEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPS 118 (701)
Q Consensus 54 ~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~ 118 (701)
.-.|+++.+.|+++++...+ ..+ .-.+|+.||||+-|-+.++||||++++...
T Consensus 16 ~~~~q~Vq~eL~~ive~L~~----~~~--------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 16 NLYFQGVQHTIARWVDRLRE----EYA--------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HCT--------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ccChHHHHHHHHHHHHHHHH----hcC--------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 34566666666666654322 111 016799999999999999999999998754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.14 E-value=0.052 Score=55.15 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.2
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCc
Q 005341 91 ALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (701)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (701)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 67999999999999999999999987654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.78 E-value=0.41 Score=50.92 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=77.1
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCch---hhHHHHHHHHHHhccCCceEEEeccCccceE-EEEe------
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE---EDFFFILHNILAEMEEVTELQPVLDAHVPVM-KFKF------ 158 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re---~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPII-Kf~~------ 158 (701)
...++..-||||=|-.+ ..|||+++..|...... ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35899999999998877 56999999888432211 2578888999999888887666666654333 3322
Q ss_pred -cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCc
Q 005341 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (701)
Q Consensus 159 -~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (701)
.++.|||.++.... + .-.++-+-.+ ..| .|.++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~------~------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------Y------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 17899999876321 0 1122222222 233 36778999999876666
Q ss_pred cCc
Q 005341 238 TGF 240 (701)
Q Consensus 238 ~G~ 240 (701)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.20 E-value=0.57 Score=49.80 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=74.4
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEec-----cCcc-ceEEEEe---c
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL-----DAHV-PVMKFKF---D 159 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~-----~ArV-PIIKf~~---~ 159 (701)
....+..-||||=|-.+ ..|||+++..|..... ..++..+.+.|.+.+.+++.-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 5699999998876543 367888889999888777643331 1122 1112221 5
Q ss_pred CceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccC
Q 005341 160 GLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTG 239 (701)
Q Consensus 160 GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G 239 (701)
++.|||.++.... + .-.++-+-.+ ..| -|.++.||+++|+-=+-+|
T Consensus 246 ~~rVDl~~vp~~~------~------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE------F------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCccccc
Confidence 7899999875321 0 1122222222 223 3778899999987666666
Q ss_pred c
Q 005341 240 F 240 (701)
Q Consensus 240 ~ 240 (701)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.71 E-value=0.71 Score=48.26 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=57.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchh
Q 005341 45 AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREE 124 (701)
Q Consensus 45 ~~l~pS~EE~~~R~~Vl~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~ 124 (701)
.|+.|---.+...++++++|.+.+++- ..-..|..+||+..|-...-||||+++++..... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d----------------~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD----------------ERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC----------------TTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC----------------CCEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 466666556666777777777776531 1125689999999999999999999998744211 1
Q ss_pred hHHHHHHHHHHhccCCceEEEeccCccceEEEEe-cCceeeEEeeeccc
Q 005341 125 DFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-DGLSIDLLYASISR 172 (701)
Q Consensus 125 ~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~-~GI~iDLsfa~l~~ 172 (701)
.| .. ..-|.....+- + ..++.++ ..++.| +|+.|||.|..+..
T Consensus 74 ~f-~~-~~Wl~~fG~~~-~-~f~~~~~-~~l~lF~Dg~riDl~l~~~~~ 117 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYL-M-LYKNEYG-TEVVIFDNLIRGEFHFLSEKD 117 (287)
T ss_dssp TC-CH-HHHHHHHCCEE-E-EEECTTS-CEEEEETTSCEEEEEEEEGGG
T ss_pred hh-hh-HHHHHHhhhhh-e-Eeecccc-eEEEEecCCcEEEEEEeeHHH
Confidence 22 11 23333322111 1 1223333 223444 79999999998753
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=88.72 E-value=0.63 Score=45.32 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=72.7
Q ss_pred ccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh--ccCCc-eEEEeccCccceEEEEe-
Q 005341 83 DQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE--MEEVT-ELQPVLDAHVPVMKFKF- 158 (701)
Q Consensus 83 ~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~--~~~v~-~l~~V~~ArVPIIKf~~- 158 (701)
.+..+..++++..-||||=|-.+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 4444556789999999999987754 99999987652 235566777 77777 665444555333 3333
Q ss_pred -cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCc
Q 005341 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (701)
Q Consensus 159 -~GI~iDLsfa~l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (701)
.|+.|||.++.... . .-.++-+--+ +.| .+.++.||+++|.-=|-
T Consensus 94 ~~~~rVDl~~vp~~~------f------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEE------K------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTC------H------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHH------H------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 68999999886321 0 1122222222 223 36778999999876666
Q ss_pred cCc
Q 005341 238 TGF 240 (701)
Q Consensus 238 ~G~ 240 (701)
+|-
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.73 E-value=1.8 Score=46.40 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.2
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCc
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVT 141 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~ 141 (701)
...++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 36899999999999877 5699999998876433 368888899998877665
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.29 E-value=5.2 Score=43.25 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCch-hhHHHHHHHHHHhccCCc
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEMEEVT 141 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re-~~Ff~~l~~~L~~~~~v~ 141 (701)
...++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.|+
T Consensus 195 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 36799999999999877 45999999887653211 127778888888876663
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.30 E-value=5 Score=45.34 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=70.1
Q ss_pred CeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeee
Q 005341 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYAS 169 (701)
Q Consensus 90 ~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~~GI~iDLsfa~ 169 (701)
..++..-||||=|-.+- .|||+++..|... .+.+.|.+.+.+.++......++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~~--------~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREGE--------RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSHH--------HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCHH--------HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999988774 5999999887531 3566777778777655444444333 11 269999999886
Q ss_pred ccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCccCcc
Q 005341 170 ISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (701)
Q Consensus 170 l~~~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (701)
... + .-.++-+-.+ ..| .|.++.||++||+-=+-+|..
T Consensus 249 ~~~------~------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES------Y------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 321 0 1122222222 223 377889999999877777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=71.82 E-value=7.4 Score=42.66 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.8
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCc-cC-------chhhHHHHHHHHHHh
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSY-VS-------REEDFFFILHNILAE 136 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~-v~-------re~~Ff~~l~~~L~~ 136 (701)
.+.-|..+|||.=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999999987643 11 113688888877765
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=59.38 E-value=22 Score=39.72 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccC---------chhhHHHHHHHHHHh
Q 005341 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVS---------REEDFFFILHNILAE 136 (701)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~---------re~~Ff~~l~~~L~~ 136 (701)
.+.-|.-+|++.=+=-.++||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 468999999999999999999999998764311 013688888776665
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=59.30 E-value=33 Score=32.82 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred CCeEEEEeccccc---cCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCcc--ceEEEEecCcee
Q 005341 89 ANALIFTFGSYRL---GVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV--PVMKFKFDGLSI 163 (701)
Q Consensus 89 ~~~~I~~FGSy~l---Gv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArV--PIIKf~~~GI~i 163 (701)
.+..-...|||++ |+-.+--|||+++- + .=...+.++|.+. +......-++... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~-~-------~da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTD-E-------EGAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEEC-H-------HHHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEec-c-------cCHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4677788899987 45557889999872 1 2234466677653 1111211122222 144566689999
Q ss_pred eEEee
Q 005341 164 DLLYA 168 (701)
Q Consensus 164 DLsfa 168 (701)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99954
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=51.59 E-value=20 Score=37.27 Aligned_cols=77 Identities=21% Similarity=0.065 Sum_probs=35.4
Q ss_pred eEEEEeccccccC--cCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEecc-------Ccc-ceEEEEe-c
Q 005341 91 ALIFTFGSYRLGV--HGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLD-------AHV-PVMKFKF-D 159 (701)
Q Consensus 91 ~~I~~FGSy~lGv--~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~-------ArV-PIIKf~~-~ 159 (701)
--|+.-||...+- .-.-||+|+++++... ..|... ...|.+...+-.++.-.+ ..- |..-+.+ +
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~d 98 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFED 98 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETT
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecC
Confidence 4578889999855 7889999999998533 123221 112222211111111000 122 3333444 7
Q ss_pred CceeeEEeeeccc
Q 005341 160 GLSIDLLYASISR 172 (701)
Q Consensus 160 GI~iDLsfa~l~~ 172 (701)
|+.|||.|..+..
T Consensus 99 g~rIDl~~~~~~~ 111 (294)
T 2pbe_A 99 GNKLDLTLIPIRE 111 (294)
T ss_dssp SCEEEEEEEEGGG
T ss_pred CcEEEEEEecHHH
Confidence 9999999998754
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=40.14 E-value=63 Score=36.47 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=57.8
Q ss_pred EEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeeccc
Q 005341 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (701)
Q Consensus 93 I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~V~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (701)
+..-||||=|-.+-+ |||+++.. .. +.. |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~~----~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-TP----DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-CH----HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-Ch----HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 888999999987754 99998876 21 111 56666665 222333322 23 89999999886321
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHH-HHHHHHHHHhCCCCCccCcc
Q 005341 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTL-RCLKFWAKRRGVYSNVTGFL 241 (701)
Q Consensus 173 ~~ip~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 241 (701)
+ .-.++-+ .. . -. |.++.||++||..=+-+|-.
T Consensus 243 ------~------------------------~~al~~~-TG-~----~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 ------R------------------------GALDLLR-SG-E----HFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp ------H------------------------HHHHHHT-SC-H----HHHHHHHHHHHTTTCEEETTEEE
T ss_pred ------H------------------------HHHHHHH-hh-h----hHHHHHHHHHHHcCCCcChhhcc
Confidence 0 1122222 22 2 23 77889999999777777754
Done!