Query 005342
Match_columns 701
No_of_seqs 651 out of 4212
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 21:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.6E-64 5.7E-69 489.7 30.8 482 2-667 9-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 5.2E-55 1.1E-59 412.2 30.1 475 13-664 7-507 (508)
3 KOG0271 Notchless-like WD40 re 100.0 2.1E-44 4.5E-49 347.9 26.5 303 318-689 106-466 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.3E-42 2.9E-47 335.5 30.4 288 307-664 137-479 (480)
5 KOG0273 Beta-transducin family 100.0 3.1E-38 6.8E-43 313.2 32.1 299 326-685 177-504 (524)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.8E-39 1E-43 315.2 21.9 270 325-664 173-458 (459)
7 KOG0286 G-protein beta subunit 100.0 3.5E-36 7.6E-41 282.1 31.7 272 387-689 49-330 (343)
8 KOG0279 G protein beta subunit 100.0 2.4E-36 5.2E-41 281.7 29.7 293 318-667 6-314 (315)
9 KOG0272 U4/U6 small nuclear ri 100.0 8.2E-37 1.8E-41 299.5 20.5 247 307-614 197-458 (459)
10 KOG0286 G-protein beta subunit 100.0 3.9E-34 8.4E-39 268.4 32.0 282 318-664 46-343 (343)
11 KOG0293 WD40 repeat-containing 100.0 1.3E-36 2.8E-41 296.7 12.1 425 195-689 17-497 (519)
12 KOG0315 G-protein beta subunit 100.0 7.6E-34 1.7E-38 260.5 27.4 268 341-676 17-298 (311)
13 KOG0295 WD40 repeat-containing 100.0 2.5E-34 5.5E-39 277.1 24.7 279 318-665 99-405 (406)
14 KOG0318 WD40 repeat stress pro 100.0 8.9E-33 1.9E-37 277.8 35.9 349 307-682 81-581 (603)
15 KOG0263 Transcription initiati 100.0 7.9E-33 1.7E-37 292.0 36.5 259 316-617 367-650 (707)
16 KOG0319 WD40-repeat-containing 100.0 2.4E-33 5.3E-38 292.5 30.2 330 307-687 127-602 (775)
17 KOG0291 WD40-repeat-containing 100.0 2.5E-32 5.3E-37 285.0 33.4 329 307-676 167-560 (893)
18 KOG0279 G protein beta subunit 100.0 1.6E-32 3.5E-37 256.2 27.9 265 388-689 10-298 (315)
19 KOG0263 Transcription initiati 100.0 2.1E-33 4.5E-38 296.3 21.8 244 392-667 378-650 (707)
20 KOG0291 WD40-repeat-containing 100.0 4.5E-31 9.8E-36 275.6 33.7 308 307-675 287-621 (893)
21 KOG0295 WD40 repeat-containing 100.0 3.2E-32 7E-37 262.6 23.2 260 386-683 101-385 (406)
22 KOG0315 G-protein beta subunit 100.0 4.1E-31 9E-36 242.6 29.2 255 307-620 20-292 (311)
23 KOG0284 Polyadenylation factor 100.0 6.3E-33 1.4E-37 271.0 17.9 273 324-665 93-379 (464)
24 KOG0645 WD40 repeat protein [G 100.0 2E-30 4.3E-35 241.2 30.4 285 318-666 5-311 (312)
25 KOG0318 WD40 repeat stress pro 100.0 4.2E-30 9E-35 258.6 33.8 324 307-666 170-602 (603)
26 KOG0265 U5 snRNP-specific prot 100.0 5.8E-31 1.3E-35 248.1 25.1 278 388-697 42-334 (338)
27 KOG0275 Conserved WD40 repeat- 100.0 1.3E-32 2.8E-37 260.7 13.4 413 196-676 8-477 (508)
28 KOG0285 Pleiotropic regulator 100.0 6.1E-31 1.3E-35 252.8 24.6 287 316-666 140-439 (460)
29 KOG0281 Beta-TrCP (transducin 100.0 6.4E-32 1.4E-36 258.3 16.9 273 326-670 196-481 (499)
30 KOG0319 WD40-repeat-containing 100.0 2.7E-30 5.9E-35 269.8 25.6 303 307-667 303-620 (775)
31 KOG0645 WD40 repeat protein [G 100.0 3.1E-29 6.8E-34 233.2 29.5 255 389-684 10-290 (312)
32 KOG0273 Beta-transducin family 100.0 2.3E-29 5.1E-34 250.3 29.2 266 328-666 236-523 (524)
33 KOG0316 Conserved WD40 repeat- 100.0 1.8E-29 3.9E-34 230.0 25.0 279 318-665 8-298 (307)
34 cd00200 WD40 WD40 domain, foun 100.0 1.1E-28 2.3E-33 251.9 33.7 274 321-664 3-289 (289)
35 KOG0284 Polyadenylation factor 100.0 6E-31 1.3E-35 257.2 14.9 253 395-686 99-362 (464)
36 PLN00181 protein SPA1-RELATED; 100.0 2E-28 4.3E-33 286.0 38.7 305 303-665 454-792 (793)
37 KOG0292 Vesicle coat complex C 100.0 1.8E-29 3.9E-34 267.2 26.7 281 324-674 6-329 (1202)
38 KOG0266 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 269.2 32.5 280 320-666 151-454 (456)
39 KOG0265 U5 snRNP-specific prot 100.0 7.4E-29 1.6E-33 233.9 26.7 275 320-664 40-336 (338)
40 KOG0285 Pleiotropic regulator 100.0 2.2E-29 4.7E-34 242.1 23.4 261 389-689 147-424 (460)
41 KOG0296 Angio-associated migra 100.0 3.2E-28 6.9E-33 235.3 29.2 299 318-666 55-398 (399)
42 KOG0266 WD40 repeat-containing 100.0 3E-28 6.5E-33 264.8 30.0 260 393-685 159-433 (456)
43 KOG0306 WD40-repeat-containing 100.0 6.1E-28 1.3E-32 252.2 29.8 339 307-691 87-609 (888)
44 KOG0276 Vesicle coat complex C 100.0 1.8E-28 3.8E-33 251.2 24.9 286 323-676 9-308 (794)
45 cd00200 WD40 WD40 domain, foun 100.0 2.8E-27 6.1E-32 241.4 33.7 258 389-685 5-272 (289)
46 KOG0282 mRNA splicing factor [ 100.0 3.9E-29 8.5E-34 249.8 17.1 278 316-664 203-503 (503)
47 KOG0306 WD40-repeat-containing 100.0 1.8E-27 3.8E-32 248.8 28.8 302 307-667 344-665 (888)
48 KOG0316 Conserved WD40 repeat- 100.0 1.5E-27 3.3E-32 217.4 23.9 261 389-689 13-285 (307)
49 KOG0313 Microtubule binding pr 100.0 8.2E-28 1.8E-32 233.4 23.1 295 325-666 103-418 (423)
50 KOG0281 Beta-TrCP (transducin 100.0 3.6E-29 7.9E-34 239.5 12.6 248 307-619 217-480 (499)
51 KOG0292 Vesicle coat complex C 100.0 9.2E-28 2E-32 254.4 22.9 245 395-676 12-290 (1202)
52 PLN00181 protein SPA1-RELATED; 100.0 2.7E-26 5.8E-31 268.1 36.8 266 389-686 479-775 (793)
53 KOG1539 WD repeat protein [Gen 100.0 2.6E-26 5.6E-31 242.9 29.3 311 307-667 182-649 (910)
54 KOG0282 mRNA splicing factor [ 100.0 6.3E-28 1.4E-32 241.2 15.5 263 389-685 210-485 (503)
55 KOG0278 Serine/threonine kinas 100.0 4.5E-27 9.7E-32 216.1 19.7 287 321-671 8-302 (334)
56 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.2E-31 249.0 28.6 276 326-674 207-490 (537)
57 KOG0276 Vesicle coat complex C 100.0 1E-26 2.2E-31 238.3 24.1 248 390-676 10-267 (794)
58 KOG0296 Angio-associated migra 100.0 3.8E-26 8.1E-31 221.0 26.3 259 388-687 59-381 (399)
59 KOG1407 WD40 repeat protein [F 100.0 7.8E-26 1.7E-30 209.5 27.0 275 321-666 14-311 (313)
60 KOG0288 WD40 repeat protein Ti 100.0 3.4E-27 7.3E-32 231.4 18.7 282 314-663 162-458 (459)
61 KOG0640 mRNA cleavage stimulat 99.9 2.8E-26 6E-31 216.9 23.2 298 322-665 107-425 (430)
62 KOG0278 Serine/threonine kinas 99.9 6.3E-27 1.4E-31 215.1 17.7 247 310-619 42-300 (334)
63 PTZ00421 coronin; Provisional 99.9 3.5E-25 7.6E-30 239.8 34.5 268 395-685 23-314 (493)
64 KOG0643 Translation initiation 99.9 2.4E-25 5.2E-30 206.8 22.5 285 322-666 5-317 (327)
65 KOG1446 Histone H3 (Lys4) meth 99.9 4.5E-24 9.7E-29 203.9 31.8 266 389-692 10-293 (311)
66 KOG0299 U3 snoRNP-associated p 99.9 4E-25 8.8E-30 219.9 25.4 280 390-700 139-445 (479)
67 KOG0277 Peroxisomal targeting 99.9 1.9E-25 4.2E-30 206.1 20.5 262 341-665 35-308 (311)
68 KOG0283 WD40 repeat-containing 99.9 3.1E-25 6.7E-30 236.8 25.1 245 389-667 262-577 (712)
69 KOG1407 WD40 repeat protein [F 99.9 8.1E-25 1.8E-29 202.8 23.9 258 389-685 16-283 (313)
70 KOG0268 Sof1-like rRNA process 99.9 6.7E-26 1.5E-30 218.8 16.1 277 321-673 60-352 (433)
71 KOG0288 WD40 repeat protein Ti 99.9 7.5E-26 1.6E-30 222.0 16.6 263 389-687 171-444 (459)
72 KOG0299 U3 snoRNP-associated p 99.9 2.4E-24 5.1E-29 214.5 27.4 294 320-664 135-454 (479)
73 KOG0641 WD40 repeat protein [G 99.9 2.3E-23 5E-28 188.8 31.0 299 318-666 24-349 (350)
74 KOG0300 WD40 repeat-containing 99.9 4.7E-25 1E-29 209.0 20.9 277 389-685 144-455 (481)
75 KOG0772 Uncharacterized conser 99.9 1E-24 2.2E-29 219.3 23.9 276 389-684 163-467 (641)
76 KOG0277 Peroxisomal targeting 99.9 4.5E-25 9.8E-30 203.6 18.4 249 307-615 38-308 (311)
77 KOG0313 Microtubule binding pr 99.9 1.6E-24 3.4E-29 210.7 23.1 257 391-683 103-398 (423)
78 KOG0310 Conserved WD40 repeat- 99.9 3.7E-24 8E-29 214.8 25.9 270 327-669 26-312 (487)
79 KOG0305 Anaphase promoting com 99.9 2.1E-24 4.6E-29 225.1 24.6 260 297-618 181-463 (484)
80 KOG0274 Cdc4 and related F-box 99.9 1.6E-24 3.6E-29 234.7 24.6 247 307-621 228-487 (537)
81 KOG0301 Phospholipase A2-activ 99.9 5.3E-24 1.1E-28 221.5 27.2 275 316-666 3-288 (745)
82 KOG0640 mRNA cleavage stimulat 99.9 9.9E-25 2.1E-29 206.4 19.2 285 389-698 108-426 (430)
83 KOG0973 Histone transcription 99.9 4.8E-24 1E-28 233.3 27.3 251 389-670 65-359 (942)
84 PTZ00420 coronin; Provisional 99.9 3.7E-23 8E-28 224.9 33.8 245 410-685 50-317 (568)
85 KOG0643 Translation initiation 99.9 1E-23 2.3E-28 196.0 25.0 262 389-691 6-304 (327)
86 KOG2096 WD40 repeat protein [G 99.9 8.4E-24 1.8E-28 201.0 24.4 282 388-686 81-385 (420)
87 PTZ00421 coronin; Provisional 99.9 6.4E-23 1.4E-27 222.3 33.2 230 388-648 70-314 (493)
88 KOG0283 WD40 repeat-containing 99.9 4E-24 8.7E-29 228.4 22.8 235 439-676 265-542 (712)
89 KOG0305 Anaphase promoting com 99.9 1E-23 2.2E-28 220.0 25.3 250 395-685 180-442 (484)
90 KOG0641 WD40 repeat protein [G 99.9 9.4E-23 2E-27 184.8 28.1 274 389-691 29-336 (350)
91 KOG0264 Nucleosome remodeling 99.9 5.5E-24 1.2E-28 212.2 21.5 255 391-666 122-404 (422)
92 KOG2106 Uncharacterized conser 99.9 2.7E-22 5.9E-27 201.4 32.5 313 307-693 134-510 (626)
93 KOG0973 Histone transcription 99.9 1.4E-23 3E-28 229.7 25.0 284 391-690 10-341 (942)
94 PTZ00420 coronin; Provisional 99.9 2.3E-22 5E-27 218.7 34.5 248 341-649 51-318 (568)
95 KOG0300 WD40 repeat-containing 99.9 1.4E-23 3E-28 199.0 21.5 291 318-668 139-478 (481)
96 KOG0289 mRNA splicing factor [ 99.9 5.7E-23 1.2E-27 202.9 26.1 261 341-665 238-505 (506)
97 KOG1408 WD40 repeat protein [F 99.9 2E-23 4.3E-28 216.9 24.0 319 307-667 346-714 (1080)
98 KOG0310 Conserved WD40 repeat- 99.9 2.4E-23 5.2E-28 209.0 23.3 255 390-685 24-290 (487)
99 KOG1539 WD repeat protein [Gen 99.9 1.1E-22 2.4E-27 215.6 29.1 334 307-685 134-628 (910)
100 KOG0646 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 207.8 22.3 283 307-652 18-334 (476)
101 KOG1063 RNA polymerase II elon 99.9 1.2E-22 2.5E-27 211.4 28.0 367 318-700 182-687 (764)
102 KOG1332 Vesicle coat complex C 99.9 8.7E-24 1.9E-28 194.1 17.2 245 390-666 8-286 (299)
103 KOG0289 mRNA splicing factor [ 99.9 9.2E-23 2E-27 201.5 25.6 233 395-665 222-461 (506)
104 KOG0772 Uncharacterized conser 99.9 7.1E-23 1.5E-27 206.0 25.1 293 316-665 156-487 (641)
105 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-21 2.3E-26 187.7 31.0 274 323-667 10-304 (311)
106 KOG0647 mRNA export protein (c 99.9 1.8E-22 4E-27 191.0 24.2 259 325-654 25-310 (347)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-21 5.8E-26 200.3 35.2 272 341-684 8-300 (300)
108 KOG0639 Transducin-like enhanc 99.9 5.5E-23 1.2E-27 205.9 20.2 276 325-665 417-703 (705)
109 KOG2106 Uncharacterized conser 99.9 4.8E-21 1E-25 192.5 33.0 332 307-692 180-546 (626)
110 KOG0308 Conserved WD40 repeat- 99.9 4.9E-23 1.1E-27 212.7 18.3 240 397-668 29-287 (735)
111 KOG1408 WD40 repeat protein [F 99.9 4.3E-22 9.4E-27 207.0 24.1 290 341-686 343-695 (1080)
112 KOG1274 WD40 repeat protein [G 99.9 9.8E-22 2.1E-26 210.9 27.5 255 391-684 11-280 (933)
113 KOG0268 Sof1-like rRNA process 99.9 4.1E-23 9E-28 199.6 15.3 255 389-687 62-328 (433)
114 KOG0647 mRNA export protein (c 99.9 1.3E-21 2.7E-26 185.3 24.2 255 395-683 30-302 (347)
115 KOG0308 Conserved WD40 repeat- 99.9 1.8E-22 3.8E-27 208.7 18.8 276 341-665 44-326 (735)
116 KOG0639 Transducin-like enhanc 99.9 2.8E-22 6E-27 200.9 19.4 269 390-701 416-693 (705)
117 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 196.0 22.5 281 343-684 17-329 (476)
118 KOG2055 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 194.7 22.6 276 327-666 213-512 (514)
119 KOG2445 Nuclear pore complex c 99.9 6.7E-21 1.5E-25 180.8 26.1 272 390-684 10-342 (361)
120 KOG0264 Nucleosome remodeling 99.9 9.2E-22 2E-26 196.4 20.6 251 325-617 122-405 (422)
121 KOG1036 Mitotic spindle checkp 99.9 8.5E-21 1.8E-25 180.6 26.1 255 327-655 13-292 (323)
122 KOG0294 WD40 repeat-containing 99.9 6.1E-21 1.3E-25 181.7 24.2 245 320-627 36-292 (362)
123 KOG1063 RNA polymerase II elon 99.9 8.7E-21 1.9E-25 197.6 27.0 310 323-666 263-699 (764)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.5E-20 1.4E-24 189.9 33.3 266 307-647 11-300 (300)
125 KOG4283 Transcription-coupled 99.9 1.3E-20 2.7E-25 177.7 24.9 267 390-684 40-345 (397)
126 KOG0269 WD40 repeat-containing 99.9 9.2E-22 2E-26 207.2 19.0 258 395-684 42-319 (839)
127 KOG2096 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 178.5 25.0 286 321-665 80-401 (420)
128 KOG0301 Phospholipase A2-activ 99.9 5.7E-21 1.2E-25 199.1 23.5 240 307-617 35-289 (745)
129 KOG1036 Mitotic spindle checkp 99.9 2.1E-20 4.5E-25 178.0 25.2 256 395-685 16-285 (323)
130 KOG2055 WD40 repeat protein [G 99.9 7.6E-21 1.6E-25 189.5 23.1 264 391-685 212-493 (514)
131 KOG2445 Nuclear pore complex c 99.9 2.3E-20 5E-25 177.2 24.0 255 324-617 10-319 (361)
132 KOG0267 Microtubule severing p 99.9 1.4E-22 3E-27 211.7 9.2 245 402-691 2-255 (825)
133 KOG2048 WD40 repeat protein [G 99.9 2.2E-19 4.8E-24 187.1 32.1 216 307-573 47-274 (691)
134 KOG1332 Vesicle coat complex C 99.9 6.9E-21 1.5E-25 175.2 17.0 243 324-617 8-287 (299)
135 KOG0294 WD40 repeat-containing 99.9 1E-19 2.2E-24 173.4 25.5 235 389-668 39-283 (362)
136 KOG4283 Transcription-coupled 99.9 1.7E-20 3.7E-25 176.8 19.0 216 440-670 42-280 (397)
137 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-20 5.3E-25 186.9 21.1 253 395-685 37-304 (673)
138 KOG1273 WD40 repeat protein [G 99.9 9.5E-20 2.1E-24 173.4 23.7 274 332-669 26-325 (405)
139 KOG1274 WD40 repeat protein [G 99.9 2.2E-19 4.7E-24 193.1 28.6 254 325-654 11-287 (933)
140 KOG0650 WD40 repeat nucleolar 99.9 3E-20 6.5E-25 190.4 21.0 286 317-663 390-732 (733)
141 KOG0267 Microtubule severing p 99.8 2E-21 4.3E-26 203.2 10.6 232 391-661 26-262 (825)
142 KOG2048 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 182.0 30.2 273 327-665 25-318 (691)
143 KOG1445 Tumor-specific antigen 99.8 9.8E-20 2.1E-24 187.2 21.7 155 507-668 628-800 (1012)
144 KOG0321 WD40 repeat-containing 99.8 3.2E-19 7E-24 184.4 22.7 264 390-669 97-394 (720)
145 KOG1273 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 168.4 22.1 255 395-684 26-303 (405)
146 KOG0307 Vesicle coat complex C 99.8 7.1E-20 1.5E-24 201.6 18.0 244 395-669 67-330 (1049)
147 KOG4328 WD40 protein [Function 99.8 5.6E-19 1.2E-23 176.2 21.4 277 389-699 182-482 (498)
148 KOG0302 Ribosome Assembly prot 99.8 7.5E-19 1.6E-23 171.2 19.9 251 390-663 148-435 (440)
149 KOG4378 Nuclear protein COP1 [ 99.8 9.6E-19 2.1E-23 175.6 19.7 277 307-649 12-305 (673)
150 KOG1538 Uncharacterized conser 99.8 2.9E-18 6.2E-23 177.5 23.1 243 307-615 33-292 (1081)
151 KOG0650 WD40 repeat nucleolar 99.8 4.1E-18 8.8E-23 174.9 23.2 256 389-665 396-679 (733)
152 KOG0269 WD40 repeat-containing 99.8 5.8E-19 1.3E-23 186.3 14.5 240 395-669 90-343 (839)
153 KOG0321 WD40 repeat-containing 99.8 5.1E-18 1.1E-22 175.6 20.4 257 321-618 94-393 (720)
154 KOG0270 WD40 repeat-containing 99.8 4.3E-18 9.3E-23 169.5 19.1 237 404-671 192-454 (463)
155 KOG0302 Ribosome Assembly prot 99.8 2.2E-18 4.9E-23 167.9 16.7 213 439-666 149-378 (440)
156 KOG1007 WD repeat protein TSSC 99.8 2.5E-17 5.4E-22 155.2 22.5 256 389-666 59-361 (370)
157 KOG1538 Uncharacterized conser 99.8 8.4E-18 1.8E-22 174.0 21.2 262 329-668 14-295 (1081)
158 KOG4328 WD40 protein [Function 99.8 1.7E-17 3.7E-22 165.7 22.4 291 312-666 171-495 (498)
159 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.2E-22 159.1 21.0 262 396-685 53-351 (406)
160 KOG0649 WD40 repeat protein [G 99.8 7.6E-17 1.6E-21 148.5 23.7 252 395-676 13-283 (325)
161 KOG1034 Transcriptional repres 99.8 2.7E-17 5.9E-22 157.8 19.6 236 341-617 112-384 (385)
162 KOG0307 Vesicle coat complex C 99.8 2.6E-18 5.5E-23 189.5 14.0 262 397-687 11-309 (1049)
163 KOG0303 Actin-binding protein 99.8 1.6E-16 3.4E-21 155.9 21.9 248 395-669 30-297 (472)
164 KOG1963 WD40 repeat protein [G 99.7 7.2E-16 1.6E-20 166.1 28.7 329 307-668 37-540 (792)
165 KOG2919 Guanine nucleotide-bin 99.7 2.4E-16 5.3E-21 150.9 22.2 278 334-658 54-361 (406)
166 KOG1009 Chromatin assembly com 99.7 2.7E-16 5.8E-21 155.1 22.1 288 329-670 15-376 (434)
167 KOG1517 Guanine nucleotide bin 99.7 5.5E-16 1.2E-20 168.7 25.2 277 342-669 1084-1384(1387)
168 KOG0290 Conserved WD40 repeat- 99.7 2.5E-16 5.4E-21 148.8 19.7 246 391-663 94-362 (364)
169 KOG1009 Chromatin assembly com 99.7 3.6E-16 7.8E-21 154.2 21.6 273 391-685 12-353 (434)
170 KOG0270 WD40 repeat-containing 99.7 2.4E-16 5.1E-21 157.2 19.6 251 398-668 131-406 (463)
171 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-17 8.3E-22 167.3 13.7 260 389-672 290-567 (577)
172 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.8E-19 150.9 33.5 239 395-666 37-304 (330)
173 COG2319 FOG: WD40 repeat [Gene 99.7 8E-14 1.7E-18 150.3 38.4 309 307-687 87-425 (466)
174 KOG1034 Transcriptional repres 99.7 5.5E-16 1.2E-20 148.9 18.6 283 323-666 34-383 (385)
175 KOG2110 Uncharacterized conser 99.7 4.6E-15 1E-19 145.0 24.6 233 395-668 8-250 (391)
176 KOG0649 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 138.2 21.1 225 442-685 11-257 (325)
177 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-13 2.3E-18 149.3 37.3 295 322-684 60-380 (466)
178 KOG4227 WD40 repeat protein [G 99.7 3.7E-15 8E-20 145.8 20.4 252 389-666 52-387 (609)
179 KOG0642 Cell-cycle nuclear pro 99.7 4.8E-16 1E-20 159.4 14.8 251 322-617 289-562 (577)
180 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.5E-19 157.0 25.7 251 395-666 245-516 (555)
181 KOG0290 Conserved WD40 repeat- 99.7 5.8E-15 1.3E-19 139.6 20.4 264 395-686 47-347 (364)
182 KOG1524 WD40 repeat-containing 99.7 2.7E-15 5.9E-20 152.3 19.3 204 404-662 75-282 (737)
183 KOG1517 Guanine nucleotide bin 99.7 9.5E-15 2.1E-19 159.2 24.2 260 395-675 1067-1341(1387)
184 KOG1007 WD repeat protein TSSC 99.7 4.3E-15 9.4E-20 140.3 18.4 198 394-617 125-362 (370)
185 KOG0322 G-protein beta subunit 99.7 1.9E-15 4.1E-20 141.1 15.3 259 388-665 9-322 (323)
186 KOG1445 Tumor-specific antigen 99.7 2.2E-15 4.7E-20 155.6 16.2 241 400-667 587-845 (1012)
187 PRK01742 tolB translocation pr 99.6 1.6E-14 3.5E-19 156.8 23.5 213 391-648 201-426 (429)
188 KOG0644 Uncharacterized conser 99.6 6.6E-16 1.4E-20 164.2 10.7 277 320-672 183-474 (1113)
189 KOG0322 G-protein beta subunit 99.6 1.2E-14 2.7E-19 135.7 17.6 253 318-615 5-322 (323)
190 KOG1587 Cytoplasmic dynein int 99.6 4.3E-14 9.4E-19 152.6 24.0 269 308-617 223-517 (555)
191 KOG0771 Prolactin regulatory e 99.6 5.4E-15 1.2E-19 147.2 15.6 194 396-618 148-356 (398)
192 KOG1523 Actin-related protein 99.6 2.9E-14 6.3E-19 136.9 19.2 231 395-657 13-269 (361)
193 KOG0303 Actin-binding protein 99.6 5.5E-14 1.2E-18 138.3 20.7 229 389-648 77-320 (472)
194 PRK11028 6-phosphogluconolacto 99.6 8E-13 1.7E-17 139.0 31.4 230 408-667 6-259 (330)
195 PF02239 Cytochrom_D1: Cytochr 99.6 8.9E-13 1.9E-17 138.7 30.3 304 307-676 16-357 (369)
196 KOG1334 WD40 repeat protein [G 99.6 1.1E-14 2.3E-19 147.0 14.5 289 318-669 133-469 (559)
197 KOG2111 Uncharacterized conser 99.6 8.6E-13 1.9E-17 126.9 26.4 234 395-667 8-257 (346)
198 KOG1963 WD40 repeat protein [G 99.6 2.1E-13 4.6E-18 147.3 24.1 260 397-676 21-332 (792)
199 PRK01742 tolB translocation pr 99.6 7.5E-14 1.6E-18 151.6 20.6 225 413-685 183-426 (429)
200 KOG1188 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 136.4 16.1 230 405-665 41-345 (376)
201 KOG1240 Protein kinase contain 99.6 5.2E-13 1.1E-17 148.2 25.3 267 389-670 1044-1338(1431)
202 KOG2321 WD40 repeat protein [G 99.6 2.8E-13 6E-18 139.3 21.6 258 391-689 49-328 (703)
203 KOG2659 LisH motif-containing 99.6 1.1E-14 2.3E-19 135.9 10.1 160 13-184 26-198 (228)
204 KOG1188 WD40 repeat protein [G 99.6 7.2E-14 1.6E-18 135.3 15.8 194 454-676 41-252 (376)
205 KOG1524 WD40 repeat-containing 99.5 1.5E-13 3.3E-18 139.8 17.4 247 391-686 12-268 (737)
206 KOG1310 WD40 repeat protein [G 99.5 7E-14 1.5E-18 142.6 14.6 216 437-674 46-311 (758)
207 KOG2139 WD40 repeat protein [G 99.5 2.9E-12 6.3E-17 125.1 24.8 258 395-669 101-386 (445)
208 KOG0644 Uncharacterized conser 99.5 1.9E-14 4.2E-19 153.2 10.2 248 389-685 186-449 (1113)
209 PRK03629 tolB translocation pr 99.5 6.1E-12 1.3E-16 136.4 28.3 226 414-685 179-428 (429)
210 PRK04922 tolB translocation pr 99.5 4E-12 8.6E-17 138.5 26.5 208 395-647 206-432 (433)
211 KOG1523 Actin-related protein 99.5 2.8E-12 6.2E-17 123.4 21.9 221 326-597 9-260 (361)
212 KOG4227 WD40 repeat protein [G 99.5 8.7E-13 1.9E-17 129.4 18.8 243 322-617 51-388 (609)
213 KOG4497 Uncharacterized conser 99.5 7.1E-13 1.5E-17 127.6 16.6 103 545-658 318-424 (447)
214 PRK03629 tolB translocation pr 99.5 7.3E-12 1.6E-16 135.8 26.6 208 395-647 201-427 (429)
215 PRK05137 tolB translocation pr 99.5 1.1E-11 2.4E-16 135.2 27.8 214 391-648 199-433 (435)
216 KOG1272 WD40-repeat-containing 99.5 9.7E-14 2.1E-18 139.2 10.1 223 396-664 133-360 (545)
217 KOG2110 Uncharacterized conser 99.5 1.7E-10 3.7E-15 113.4 32.3 188 395-617 49-249 (391)
218 PRK02889 tolB translocation pr 99.5 8.5E-12 1.8E-16 135.4 25.8 211 395-648 198-425 (427)
219 KOG0771 Prolactin regulatory e 99.5 4E-13 8.7E-18 134.0 13.5 177 510-691 148-341 (398)
220 PRK05137 tolB translocation pr 99.5 2E-11 4.4E-16 133.1 28.2 226 414-685 182-433 (435)
221 PRK04922 tolB translocation pr 99.5 1.3E-11 2.9E-16 134.3 24.7 225 414-684 184-432 (433)
222 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3.1E-18 138.1 8.1 209 442-685 130-345 (545)
223 PF08662 eIF2A: Eukaryotic tra 99.4 9E-12 2E-16 119.2 20.2 132 527-674 41-186 (194)
224 KOG1334 WD40 repeat protein [G 99.4 1.1E-12 2.4E-17 132.6 14.1 260 389-676 138-434 (559)
225 KOG2111 Uncharacterized conser 99.4 1.6E-10 3.5E-15 111.5 27.9 173 414-618 75-258 (346)
226 KOG1310 WD40 repeat protein [G 99.4 1.4E-12 3E-17 133.3 14.5 214 389-621 46-308 (758)
227 KOG2139 WD40 repeat protein [G 99.4 1.6E-10 3.4E-15 113.1 27.2 272 334-665 103-430 (445)
228 PRK02889 tolB translocation pr 99.4 3E-11 6.4E-16 131.2 24.5 226 414-685 176-425 (427)
229 KOG3881 Uncharacterized conser 99.4 2.9E-11 6.4E-16 119.5 21.6 258 395-683 58-340 (412)
230 KOG4497 Uncharacterized conser 99.4 2.3E-11 5.1E-16 117.3 18.8 253 398-685 14-372 (447)
231 KOG2394 WD40 protein DMR-N9 [G 99.4 1.1E-11 2.3E-16 126.9 17.2 165 516-689 185-389 (636)
232 KOG1240 Protein kinase contain 99.4 9.5E-11 2.1E-15 130.6 25.7 255 316-618 1037-1336(1431)
233 KOG2394 WD40 protein DMR-N9 [G 99.4 8.9E-12 1.9E-16 127.5 16.3 213 401-619 182-455 (636)
234 KOG3881 Uncharacterized conser 99.4 2.4E-11 5.1E-16 120.1 18.3 212 405-648 116-342 (412)
235 KOG2315 Predicted translation 99.4 2.9E-10 6.3E-15 117.5 26.9 305 307-688 55-414 (566)
236 PF08662 eIF2A: Eukaryotic tra 99.4 6.8E-11 1.5E-15 113.1 20.2 108 505-617 58-180 (194)
237 PF10282 Lactonase: Lactonase, 99.4 5.5E-09 1.2E-13 110.2 35.6 260 395-673 39-331 (345)
238 PRK01029 tolB translocation pr 99.3 5.8E-10 1.2E-14 120.6 27.7 232 414-685 165-425 (428)
239 PF02239 Cytochrom_D1: Cytochr 99.3 6.7E-10 1.4E-14 117.0 27.4 274 342-686 14-327 (369)
240 PRK04792 tolB translocation pr 99.3 5.4E-10 1.2E-14 121.8 26.1 227 415-685 199-447 (448)
241 KOG1354 Serine/threonine prote 99.3 2.2E-10 4.9E-15 111.3 19.5 272 395-669 28-362 (433)
242 TIGR02800 propeller_TolB tol-p 99.3 8.6E-10 1.9E-14 120.1 26.8 215 414-674 170-404 (417)
243 KOG0974 WD-repeat protein WDR6 99.3 1.1E-10 2.4E-15 128.7 19.4 190 443-667 89-289 (967)
244 PRK01029 tolB translocation pr 99.3 1.5E-09 3.3E-14 117.3 28.0 217 395-649 187-426 (428)
245 KOG4547 WD40 repeat-containing 99.3 7.3E-10 1.6E-14 115.5 23.8 190 401-617 2-221 (541)
246 PRK00178 tolB translocation pr 99.3 1.5E-09 3.3E-14 118.5 27.5 225 415-685 180-428 (430)
247 PRK00178 tolB translocation pr 99.3 1.5E-09 3.2E-14 118.6 26.6 211 395-648 201-428 (430)
248 TIGR02800 propeller_TolB tol-p 99.3 1.7E-09 3.6E-14 117.9 25.9 191 392-617 188-398 (417)
249 KOG2321 WD40 repeat protein [G 99.2 1E-09 2.2E-14 113.5 21.5 229 395-667 97-344 (703)
250 PF10282 Lactonase: Lactonase, 99.2 4E-08 8.6E-13 103.7 34.0 247 414-685 13-302 (345)
251 PRK04792 tolB translocation pr 99.2 2.9E-09 6.2E-14 116.1 26.0 210 395-647 220-446 (448)
252 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.9E-08 6.2E-13 102.3 31.5 265 343-676 26-340 (352)
253 KOG1409 Uncharacterized conser 99.2 7.4E-10 1.6E-14 107.9 18.2 220 389-617 20-271 (404)
254 COG2706 3-carboxymuconate cycl 99.2 1.3E-07 2.9E-12 93.7 33.0 257 395-671 42-328 (346)
255 COG2706 3-carboxymuconate cycl 99.2 5.4E-08 1.2E-12 96.5 29.7 229 413-666 15-274 (346)
256 COG5354 Uncharacterized protei 99.2 1.2E-08 2.6E-13 104.5 25.7 302 311-687 16-372 (561)
257 KOG1912 WD40 repeat protein [G 99.2 8E-09 1.7E-13 110.3 24.5 120 558-683 439-572 (1062)
258 COG4946 Uncharacterized protei 99.2 2.6E-08 5.7E-13 100.9 26.5 158 516-685 332-499 (668)
259 KOG2041 WD40 repeat protein [G 99.1 9.6E-09 2.1E-13 108.6 22.1 259 394-685 16-319 (1189)
260 KOG0280 Uncharacterized conser 99.1 9.3E-09 2E-13 98.4 20.1 251 392-670 69-337 (339)
261 KOG0974 WD-repeat protein WDR6 99.1 1.1E-09 2.4E-14 121.0 15.7 188 397-617 92-289 (967)
262 KOG0280 Uncharacterized conser 99.1 8.3E-09 1.8E-13 98.7 19.3 225 413-668 45-286 (339)
263 KOG4547 WD40 repeat-containing 99.1 2.3E-09 5E-14 111.9 16.9 197 451-667 3-221 (541)
264 KOG1064 RAVE (regulator of V-A 99.1 4.5E-10 9.8E-15 129.3 12.6 187 389-618 2204-2400(2439)
265 KOG1409 Uncharacterized conser 99.1 9.3E-09 2E-13 100.4 19.0 222 319-574 16-270 (404)
266 COG4946 Uncharacterized protei 99.1 5.1E-08 1.1E-12 98.9 24.8 224 389-654 260-505 (668)
267 KOG4190 Uncharacterized conser 99.1 4.2E-10 9.1E-15 115.3 9.5 207 389-619 731-951 (1034)
268 KOG2315 Predicted translation 99.1 1.6E-07 3.6E-12 97.5 28.2 268 395-690 37-370 (566)
269 COG5354 Uncharacterized protei 99.1 9.4E-08 2E-12 98.1 25.7 285 307-667 53-396 (561)
270 KOG1354 Serine/threonine prote 99.0 5.4E-09 1.2E-13 101.9 13.4 241 389-664 160-432 (433)
271 KOG2041 WD40 repeat protein [G 99.0 8.1E-08 1.8E-12 101.8 22.6 278 334-665 19-336 (1189)
272 PLN02919 haloacid dehalogenase 99.0 7.2E-07 1.6E-11 106.4 33.7 262 395-670 570-892 (1057)
273 KOG2314 Translation initiation 99.0 1.4E-07 2.9E-12 97.7 23.3 240 391-667 248-526 (698)
274 COG5170 CDC55 Serine/threonine 98.9 3.5E-08 7.5E-13 95.0 15.1 262 395-664 29-365 (460)
275 PRK04043 tolB translocation pr 98.9 8.4E-07 1.8E-11 95.5 26.8 194 443-674 189-407 (419)
276 TIGR02658 TTQ_MADH_Hv methylam 98.9 2.9E-06 6.3E-11 87.6 28.6 263 307-621 27-335 (352)
277 KOG1064 RAVE (regulator of V-A 98.9 1.2E-08 2.7E-13 117.9 11.6 192 440-676 2207-2408(2439)
278 PRK04043 tolB translocation pr 98.8 1.2E-06 2.6E-11 94.2 25.5 189 395-618 190-402 (419)
279 TIGR03300 assembly_YfgL outer 98.8 3.2E-06 6.9E-11 90.7 28.7 289 307-663 75-376 (377)
280 KOG2314 Translation initiation 98.8 6.9E-07 1.5E-11 92.6 21.9 262 395-686 213-504 (698)
281 PF08450 SGL: SMP-30/Gluconola 98.8 1.1E-05 2.3E-10 81.0 30.5 217 446-700 4-245 (246)
282 KOG3914 WD repeat protein WDR4 98.8 7.6E-08 1.6E-12 96.3 12.8 159 443-622 64-229 (390)
283 KOG3914 WD repeat protein WDR4 98.7 8.2E-08 1.8E-12 96.0 12.0 150 516-676 74-233 (390)
284 PF10607 CLTH: CTLH/CRA C-term 98.7 2E-08 4.3E-13 91.7 7.1 130 45-186 4-137 (145)
285 TIGR03300 assembly_YfgL outer 98.7 1.2E-05 2.6E-10 86.3 29.4 231 403-676 104-348 (377)
286 KOG2695 WD40 repeat protein [G 98.7 2.7E-08 5.8E-13 97.2 7.9 170 513-689 218-407 (425)
287 PF04762 IKI3: IKI3 family; I 98.7 4.8E-06 1E-10 97.6 28.0 255 395-662 78-375 (928)
288 KOG4532 WD40-like repeat conta 98.7 2.1E-06 4.5E-11 81.5 19.1 197 453-675 84-291 (344)
289 KOG4714 Nucleoporin [Nuclear s 98.7 2.3E-07 5E-12 87.5 12.1 148 449-617 97-255 (319)
290 PF13360 PQQ_2: PQQ-like domai 98.7 8.1E-06 1.7E-10 81.3 24.0 217 413-672 2-236 (238)
291 PF04762 IKI3: IKI3 family; I 98.7 2.4E-05 5.3E-10 91.8 31.2 200 440-669 74-336 (928)
292 PLN02919 haloacid dehalogenase 98.7 9E-06 2E-10 97.1 27.8 210 395-620 626-892 (1057)
293 KOG4532 WD40-like repeat conta 98.6 1E-05 2.2E-10 76.9 21.3 232 404-667 84-332 (344)
294 KOG0396 Uncharacterized conser 98.6 3.2E-07 6.9E-12 91.0 11.5 119 13-132 115-241 (389)
295 KOG0309 Conserved WD40 repeat- 98.6 3.7E-07 8.1E-12 97.4 12.5 250 393-676 25-297 (1081)
296 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.6E-12 64.0 6.5 39 576-614 1-39 (39)
297 KOG0309 Conserved WD40 repeat- 98.6 2.5E-07 5.4E-12 98.7 10.1 228 441-700 24-267 (1081)
298 KOG4190 Uncharacterized conser 98.6 1.9E-07 4E-12 96.3 8.4 168 503-676 732-916 (1034)
299 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.2E-05 1.1E-09 80.3 27.2 264 343-654 22-344 (353)
300 PF15492 Nbas_N: Neuroblastoma 98.5 3E-05 6.6E-10 75.1 22.5 195 395-619 46-262 (282)
301 PF07433 DUF1513: Protein of u 98.5 8.7E-05 1.9E-09 74.1 25.8 167 512-683 56-266 (305)
302 KOG0882 Cyclophilin-related pe 98.5 2.3E-06 4.9E-11 86.8 14.7 260 391-676 7-315 (558)
303 KOG1920 IkappaB kinase complex 98.5 7.5E-05 1.6E-09 85.0 26.4 223 395-627 71-333 (1265)
304 PF15492 Nbas_N: Neuroblastoma 98.5 0.00024 5.2E-09 69.0 26.3 239 397-675 2-268 (282)
305 PF13360 PQQ_2: PQQ-like domai 98.4 0.00022 4.7E-09 71.0 27.4 217 343-620 2-234 (238)
306 smart00668 CTLH C-terminal to 98.4 1.9E-07 4E-12 70.2 3.7 54 45-99 4-57 (58)
307 PF08450 SGL: SMP-30/Gluconola 98.4 0.00046 1E-08 69.1 29.4 213 397-654 4-242 (246)
308 KOG2695 WD40 repeat protein [G 98.4 1.1E-06 2.4E-11 86.2 8.6 149 408-584 228-386 (425)
309 KOG1832 HIV-1 Vpr-binding prot 98.4 3.4E-07 7.5E-12 99.4 5.0 211 388-654 1096-1318(1516)
310 KOG4714 Nucleoporin [Nuclear s 98.4 3.5E-06 7.6E-11 79.7 11.0 147 400-575 97-255 (319)
311 COG5170 CDC55 Serine/threonine 98.4 8.5E-06 1.8E-10 78.9 13.7 227 440-676 25-320 (460)
312 KOG0882 Cyclophilin-related pe 98.3 3.4E-06 7.4E-11 85.6 11.1 215 440-676 8-241 (558)
313 KOG2066 Vacuolar assembly/sort 98.3 5.9E-06 1.3E-10 89.8 13.0 151 506-676 39-197 (846)
314 KOG1832 HIV-1 Vpr-binding prot 98.3 6.2E-07 1.3E-11 97.4 4.9 193 438-676 1098-1301(1516)
315 PF11768 DUF3312: Protein of u 98.3 0.00037 8E-09 74.2 25.0 128 485-618 185-331 (545)
316 KOG2066 Vacuolar assembly/sort 98.3 6.2E-05 1.3E-09 82.1 19.2 142 402-574 81-233 (846)
317 PF06433 Me-amine-dh_H: Methyl 98.2 0.00066 1.4E-08 68.8 24.5 244 397-676 40-330 (342)
318 PF07433 DUF1513: Protein of u 98.2 0.0019 4.2E-08 64.7 27.3 224 397-662 9-281 (305)
319 PF00400 WD40: WD domain, G-be 98.2 5.5E-06 1.2E-10 56.3 6.0 38 535-572 1-39 (39)
320 KOG3617 WD40 and TPR repeat-co 98.2 7.8E-05 1.7E-09 81.3 17.5 69 395-470 62-130 (1416)
321 KOG1645 RING-finger-containing 98.1 0.00017 3.7E-09 72.6 16.5 240 388-666 188-461 (463)
322 KOG1275 PAB-dependent poly(A) 98.1 7.7E-05 1.7E-09 82.2 15.2 180 403-615 146-341 (1118)
323 PRK11138 outer membrane biogen 98.1 0.0011 2.3E-08 71.6 24.1 231 404-675 120-362 (394)
324 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.002 4.4E-08 61.5 21.5 124 490-617 39-166 (354)
325 PRK11138 outer membrane biogen 98.0 0.0013 2.8E-08 70.9 23.4 225 404-672 69-318 (394)
326 KOG2114 Vacuolar assembly/sort 98.0 0.0021 4.5E-08 71.1 24.0 195 399-618 30-245 (933)
327 KOG1912 WD40 repeat protein [G 98.0 0.00012 2.7E-09 79.2 14.1 148 508-664 17-184 (1062)
328 KOG1645 RING-finger-containing 98.0 0.00099 2.1E-08 67.3 19.4 73 503-576 190-268 (463)
329 PF04053 Coatomer_WDAD: Coatom 98.0 0.0017 3.7E-08 69.9 22.9 213 395-665 35-261 (443)
330 smart00667 LisH Lissencephaly 97.9 1.3E-05 2.9E-10 52.5 4.2 31 13-43 3-33 (34)
331 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.011 2.3E-07 56.7 24.8 225 398-668 99-353 (354)
332 KOG2114 Vacuolar assembly/sort 97.9 0.00088 1.9E-08 73.9 19.9 196 448-675 30-252 (933)
333 PRK02888 nitrous-oxide reducta 97.9 0.00057 1.2E-08 74.6 17.9 99 516-617 288-405 (635)
334 KOG1275 PAB-dependent poly(A) 97.9 0.00032 6.9E-09 77.6 15.2 149 508-664 179-340 (1118)
335 KOG1920 IkappaB kinase complex 97.8 0.0012 2.6E-08 75.6 19.6 196 441-668 68-324 (1265)
336 PF06433 Me-amine-dh_H: Methyl 97.8 0.0041 8.9E-08 63.1 21.1 262 307-621 17-325 (342)
337 KOG3621 WD40 repeat-containing 97.8 0.0032 7E-08 68.3 20.8 138 395-555 36-180 (726)
338 PF00780 CNH: CNH domain; Int 97.8 0.047 1E-06 55.6 28.8 239 402-676 5-265 (275)
339 COG0823 TolB Periplasmic compo 97.7 0.0004 8.6E-09 74.5 13.7 158 507-676 193-368 (425)
340 PF02897 Peptidase_S9_N: Proly 97.7 0.042 9E-07 59.7 29.8 240 395-671 126-409 (414)
341 PF08513 LisH: LisH; InterPro 97.7 5.1E-05 1.1E-09 46.3 3.7 27 14-40 1-27 (27)
342 PF11768 DUF3312: Protein of u 97.7 0.0014 3.1E-08 69.9 16.7 89 568-668 238-331 (545)
343 COG3386 Gluconolactonase [Carb 97.7 0.012 2.7E-07 60.1 22.7 170 508-684 67-264 (307)
344 PF14583 Pectate_lyase22: Olig 97.7 0.03 6.5E-07 58.1 25.2 254 398-693 41-371 (386)
345 PF08553 VID27: VID27 cytoplas 97.7 0.0015 3.3E-08 74.1 17.2 173 490-666 510-724 (794)
346 PF04053 Coatomer_WDAD: Coatom 97.7 0.0025 5.3E-08 68.7 18.0 195 442-684 33-242 (443)
347 KOG1008 Uncharacterized conser 97.6 3.2E-05 7E-10 82.1 2.7 200 441-666 56-275 (783)
348 PF06977 SdiA-regulated: SdiA- 97.6 0.043 9.2E-07 54.3 24.2 197 440-663 20-247 (248)
349 COG0823 TolB Periplasmic compo 97.6 0.002 4.3E-08 69.2 15.9 180 395-606 195-389 (425)
350 PF08596 Lgl_C: Lethal giant l 97.6 0.025 5.5E-07 60.2 24.0 223 443-676 3-300 (395)
351 PF06977 SdiA-regulated: SdiA- 97.5 0.057 1.2E-06 53.4 24.3 202 391-613 19-247 (248)
352 PF04841 Vps16_N: Vps16, N-ter 97.5 0.082 1.8E-06 57.0 27.5 214 398-649 34-271 (410)
353 PF08596 Lgl_C: Lethal giant l 97.5 0.039 8.5E-07 58.7 24.0 250 395-665 4-334 (395)
354 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.018 4E-07 60.9 20.9 262 307-603 23-344 (353)
355 KOG3621 WD40 repeat-containing 97.3 0.0021 4.6E-08 69.6 12.0 118 547-667 35-155 (726)
356 smart00320 WD40 WD40 repeats. 97.3 0.00063 1.4E-08 44.8 5.3 39 576-614 2-40 (40)
357 cd00216 PQQ_DH Dehydrogenases 97.3 0.46 1E-05 52.7 31.4 99 524-622 174-325 (488)
358 COG3391 Uncharacterized conser 97.3 0.38 8.2E-06 51.5 29.4 201 442-676 74-293 (381)
359 PF03178 CPSF_A: CPSF A subuni 97.3 0.034 7.4E-07 58.0 20.5 113 504-617 86-203 (321)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.22 4.7E-06 55.6 27.4 54 526-579 272-338 (527)
361 PF08553 VID27: VID27 cytoplas 97.2 0.0082 1.8E-07 68.3 15.7 132 524-665 503-646 (794)
362 PF05096 Glu_cyclase_2: Glutam 97.2 0.13 2.8E-06 50.7 22.0 173 505-685 43-241 (264)
363 KOG4640 Anaphase-promoting com 97.2 0.0015 3.3E-08 69.8 9.2 94 587-690 21-121 (665)
364 KOG2395 Protein involved in va 97.2 0.042 9E-07 58.0 19.3 98 518-616 397-500 (644)
365 KOG1008 Uncharacterized conser 97.2 0.00018 3.8E-09 76.7 1.9 197 395-617 59-276 (783)
366 KOG2817 Predicted E3 ubiquitin 97.1 0.0031 6.8E-08 64.1 10.0 117 12-130 115-245 (394)
367 KOG4640 Anaphase-promoting com 97.1 0.0026 5.6E-08 68.1 9.6 93 545-646 20-114 (665)
368 KOG2395 Protein involved in va 97.0 0.036 7.8E-07 58.5 17.0 136 519-665 349-499 (644)
369 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.053 1.2E-06 45.6 14.7 93 553-661 10-109 (111)
370 PF02897 Peptidase_S9_N: Proly 97.0 0.5 1.1E-05 51.2 26.9 227 341-620 147-408 (414)
371 PRK02888 nitrous-oxide reducta 96.9 0.035 7.6E-07 61.1 17.0 105 555-667 286-405 (635)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.52 1.1E-05 50.2 25.2 90 585-675 306-407 (415)
373 PF04841 Vps16_N: Vps16, N-ter 96.9 0.45 9.8E-06 51.3 25.1 124 524-676 199-324 (410)
374 COG3391 Uncharacterized conser 96.9 0.48 1E-05 50.7 25.0 193 395-619 76-286 (381)
375 PF14583 Pectate_lyase22: Olig 96.8 0.31 6.7E-06 50.8 21.9 197 448-672 42-278 (386)
376 COG3386 Gluconolactonase [Carb 96.7 0.83 1.8E-05 46.9 24.4 119 525-654 143-272 (307)
377 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.085 1.8E-06 44.4 13.6 97 509-611 2-109 (111)
378 cd00216 PQQ_DH Dehydrogenases 96.6 0.39 8.5E-06 53.3 22.8 154 517-675 111-328 (488)
379 PRK13616 lipoprotein LpqB; Pro 96.6 0.045 9.9E-07 61.4 15.4 149 507-666 350-527 (591)
380 PF05096 Glu_cyclase_2: Glutam 96.6 0.84 1.8E-05 45.1 24.1 190 441-655 44-249 (264)
381 smart00320 WD40 WD40 repeats. 96.5 0.0071 1.5E-07 39.4 5.4 38 535-572 2-40 (40)
382 TIGR03118 PEPCTERM_chp_1 conse 96.5 1 2.2E-05 45.0 22.9 252 395-700 25-322 (336)
383 KOG3617 WD40 and TPR repeat-co 96.5 0.0056 1.2E-07 67.4 6.9 99 516-616 27-131 (1416)
384 COG3490 Uncharacterized protei 96.4 0.76 1.6E-05 45.2 19.5 231 345-615 92-347 (366)
385 KOG4499 Ca2+-binding protein R 96.3 0.65 1.4E-05 44.3 18.4 136 546-684 109-263 (310)
386 PHA02713 hypothetical protein; 96.2 1.1 2.4E-05 50.5 23.2 144 516-670 352-537 (557)
387 PF00780 CNH: CNH domain; Int 96.1 0.37 7.9E-06 48.9 17.6 146 516-672 7-171 (275)
388 PRK13616 lipoprotein LpqB; Pro 96.1 0.081 1.8E-06 59.5 13.6 140 524-669 328-482 (591)
389 PF03178 CPSF_A: CPSF A subuni 96.0 0.23 5.1E-06 51.8 15.9 131 525-666 62-202 (321)
390 KOG4441 Proteins containing BT 95.9 0.93 2E-05 51.0 21.0 229 403-670 284-550 (571)
391 KOG2079 Vacuolar assembly/sort 95.7 0.042 9.2E-07 62.7 9.2 108 549-664 91-201 (1206)
392 KOG2079 Vacuolar assembly/sort 95.6 0.047 1E-06 62.4 8.7 101 513-615 96-202 (1206)
393 PF05694 SBP56: 56kDa selenium 95.5 1.9 4.1E-05 45.5 19.5 129 524-654 221-390 (461)
394 KOG2444 WD40 repeat protein [G 95.5 0.046 9.9E-07 51.8 7.1 102 516-617 70-178 (238)
395 PF14870 PSII_BNR: Photosynthe 95.4 3.6 7.8E-05 42.1 32.3 138 542-685 141-286 (302)
396 PRK10115 protease 2; Provision 95.4 7 0.00015 45.3 29.2 229 395-669 129-397 (686)
397 KOG1897 Damage-specific DNA bi 95.4 7.2 0.00016 45.1 26.3 251 395-675 533-824 (1096)
398 COG3823 Glutamine cyclotransfe 95.4 0.66 1.4E-05 43.5 14.0 168 511-686 50-240 (262)
399 PF05694 SBP56: 56kDa selenium 95.4 4.6 0.0001 42.8 24.6 197 452-667 86-343 (461)
400 COG3204 Uncharacterized protei 95.3 3.5 7.5E-05 41.1 22.0 198 438-661 82-307 (316)
401 COG3490 Uncharacterized protei 95.3 1.5 3.2E-05 43.3 16.8 139 511-654 72-242 (366)
402 PHA02713 hypothetical protein; 95.3 1 2.2E-05 50.8 18.5 90 526-619 433-536 (557)
403 PF12894 Apc4_WD40: Anaphase-p 95.2 0.065 1.4E-06 37.7 5.5 33 586-619 11-43 (47)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 4.7 0.0001 45.1 23.3 98 524-621 180-338 (527)
405 PF12234 Rav1p_C: RAVE protein 95.2 0.73 1.6E-05 51.5 16.3 115 546-665 30-155 (631)
406 PHA03098 kelch-like protein; P 95.2 2.3 5E-05 47.9 21.1 102 516-619 390-514 (534)
407 COG3204 Uncharacterized protei 95.0 4.2 9.1E-05 40.5 19.6 169 395-583 88-271 (316)
408 PF15390 DUF4613: Domain of un 95.0 0.39 8.4E-06 51.9 12.9 146 507-667 20-187 (671)
409 KOG1897 Damage-specific DNA bi 94.8 10 0.00022 44.0 30.1 243 395-672 586-862 (1096)
410 KOG4499 Ca2+-binding protein R 94.5 2.5 5.4E-05 40.5 15.5 87 510-596 161-263 (310)
411 PHA03098 kelch-like protein; P 94.3 3.4 7.3E-05 46.6 19.6 141 516-669 343-514 (534)
412 PF10647 Gmad1: Lipoprotein Lp 94.1 4.1 8.8E-05 40.8 17.7 151 508-665 25-196 (253)
413 PF12894 Apc4_WD40: Anaphase-p 94.0 0.15 3.2E-06 35.9 5.0 32 545-577 11-43 (47)
414 PF14761 HPS3_N: Hermansky-Pud 93.7 3.5 7.6E-05 39.3 15.1 138 549-692 21-198 (215)
415 KOG4441 Proteins containing BT 93.7 2.6 5.5E-05 47.6 17.0 187 403-619 332-549 (571)
416 PF14781 BBS2_N: Ciliary BBSom 93.5 3.3 7.2E-05 36.2 13.3 110 552-673 5-132 (136)
417 KOG2444 WD40 repeat protein [G 93.5 0.26 5.7E-06 46.8 7.2 101 453-575 70-178 (238)
418 TIGR03074 PQQ_membr_DH membran 93.3 20 0.00044 41.8 25.0 100 524-623 335-484 (764)
419 PHA02790 Kelch-like protein; P 93.3 7.8 0.00017 42.9 19.8 98 516-618 363-472 (480)
420 KOG3630 Nuclear pore complex, 93.2 0.23 5E-06 57.3 7.5 128 546-683 101-252 (1405)
421 PF07995 GSDH: Glucose / Sorbo 93.0 13 0.00029 38.8 24.8 70 587-661 253-330 (331)
422 TIGR03074 PQQ_membr_DH membran 92.8 24 0.00053 41.2 24.5 156 516-676 260-487 (764)
423 PF10168 Nup88: Nuclear pore c 92.6 2.6 5.6E-05 48.6 15.0 71 546-617 85-180 (717)
424 PF07569 Hira: TUP1-like enhan 92.4 0.93 2E-05 44.2 9.7 80 593-672 17-101 (219)
425 PF10647 Gmad1: Lipoprotein Lp 92.3 3.7 8.1E-05 41.0 14.2 111 547-666 25-144 (253)
426 TIGR02604 Piru_Ver_Nterm putat 92.2 4.7 0.0001 42.8 15.7 135 508-654 15-200 (367)
427 KOG1916 Nuclear protein, conta 91.8 0.2 4.2E-06 56.4 4.6 163 503-671 129-328 (1283)
428 PF12234 Rav1p_C: RAVE protein 91.5 9.7 0.00021 42.9 17.3 100 516-617 41-157 (631)
429 PF14870 PSII_BNR: Photosynthe 90.9 21 0.00045 36.6 26.2 151 504-663 142-301 (302)
430 PF02333 Phytase: Phytase; In 90.7 25 0.00054 37.1 20.6 185 402-618 66-292 (381)
431 TIGR02604 Piru_Ver_Nterm putat 90.6 7.2 0.00016 41.5 15.1 98 508-607 73-204 (367)
432 KOG4460 Nuclear pore complex, 90.3 3.7 8.1E-05 43.9 11.8 25 547-571 105-130 (741)
433 PHA02790 Kelch-like protein; P 90.2 28 0.00061 38.5 19.8 139 516-669 319-473 (480)
434 PF10214 Rrn6: RNA polymerase 90.1 31 0.00067 40.7 21.0 142 543-685 77-257 (765)
435 KOG2377 Uncharacterized conser 90.0 6.3 0.00014 41.5 13.0 152 402-576 31-187 (657)
436 KOG3630 Nuclear pore complex, 89.6 5 0.00011 47.0 13.0 124 524-654 123-260 (1405)
437 PF10313 DUF2415: Uncharacteri 89.2 1.5 3.3E-05 29.9 5.4 30 638-667 1-34 (43)
438 COG5167 VID27 Protein involved 89.1 6 0.00013 42.2 12.3 131 524-666 489-632 (776)
439 PF14781 BBS2_N: Ciliary BBSom 88.9 15 0.00034 32.2 14.2 115 398-542 4-134 (136)
440 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 4.6 0.0001 43.2 11.6 76 545-622 307-404 (415)
441 smart00667 LisH Lissencephaly 88.8 0.22 4.9E-06 31.9 1.2 30 195-224 3-32 (34)
442 PRK13684 Ycf48-like protein; P 88.8 33 0.00072 35.8 29.2 121 545-674 172-295 (334)
443 PF07569 Hira: TUP1-like enhan 88.7 3.9 8.5E-05 39.8 10.3 73 507-580 13-101 (219)
444 PF08728 CRT10: CRT10; InterP 88.6 20 0.00042 41.0 16.7 143 516-665 49-245 (717)
445 KOG2247 WD40 repeat-containing 88.6 0.077 1.7E-06 55.7 -1.7 142 442-609 35-181 (615)
446 KOG2280 Vacuolar assembly/sort 88.5 42 0.00091 38.1 18.6 38 586-623 216-253 (829)
447 PF10313 DUF2415: Uncharacteri 88.4 1.6 3.4E-05 29.9 5.0 31 587-617 1-34 (43)
448 COG1520 FOG: WD40-like repeat 88.3 20 0.00044 38.1 16.5 105 516-621 68-176 (370)
449 KOG2280 Vacuolar assembly/sort 88.2 52 0.0011 37.4 21.2 39 545-583 216-255 (829)
450 PF07250 Glyoxal_oxid_N: Glyox 87.4 13 0.00028 36.6 12.9 146 527-676 48-207 (243)
451 PF05935 Arylsulfotrans: Aryls 87.0 21 0.00046 39.4 16.0 148 524-676 127-311 (477)
452 COG5276 Uncharacterized conser 86.9 36 0.00078 34.2 20.5 152 506-668 86-243 (370)
453 PF07995 GSDH: Glucose / Sorbo 86.9 14 0.00031 38.6 13.9 106 547-654 3-130 (331)
454 PRK13684 Ycf48-like protein; P 86.6 44 0.00096 34.9 24.5 150 506-665 172-330 (334)
455 KOG1916 Nuclear protein, conta 86.5 0.44 9.5E-06 53.8 2.4 101 518-619 197-326 (1283)
456 PLN00033 photosystem II stabil 86.3 45 0.00098 35.7 17.4 147 506-663 238-396 (398)
457 PF15390 DUF4613: Domain of un 86.0 26 0.00056 38.6 15.0 110 507-617 57-187 (671)
458 PF08728 CRT10: CRT10; InterP 85.5 33 0.00073 39.2 16.3 108 508-616 102-246 (717)
459 TIGR02276 beta_rpt_yvtn 40-res 85.1 2.8 6E-05 28.3 5.2 30 647-676 1-32 (42)
460 KOG2247 WD40 repeat-containing 85.1 0.13 2.9E-06 54.0 -2.2 239 397-674 39-288 (615)
461 PRK10115 protease 2; Provision 84.8 85 0.0018 36.5 30.8 195 397-619 176-397 (686)
462 KOG3616 Selective LIM binding 84.0 39 0.00085 38.0 15.4 66 395-470 17-82 (1636)
463 PF14727 PHTB1_N: PTHB1 N-term 83.5 70 0.0015 34.5 25.5 143 453-615 37-203 (418)
464 COG5167 VID27 Protein involved 82.6 50 0.0011 35.7 15.0 100 517-617 529-633 (776)
465 COG4257 Vgb Streptogramin lyas 82.4 55 0.0012 32.6 20.6 233 397-668 66-307 (353)
466 PF14761 HPS3_N: Hermansky-Pud 82.3 40 0.00087 32.3 13.1 150 509-665 20-213 (215)
467 PF12657 TFIIIC_delta: Transcr 80.8 10 0.00022 35.4 8.8 31 587-617 86-122 (173)
468 KOG1896 mRNA cleavage and poly 80.1 1.1E+02 0.0023 37.0 17.8 114 503-617 1094-1214(1366)
469 PF03022 MRJP: Major royal jel 79.9 72 0.0016 32.5 15.3 165 526-694 35-256 (287)
470 PF08513 LisH: LisH; InterPro 79.5 1.1 2.3E-05 27.4 1.1 26 197-222 2-27 (27)
471 TIGR03606 non_repeat_PQQ dehyd 79.3 83 0.0018 34.3 16.1 107 545-654 29-162 (454)
472 smart00757 CRA CT11-RanBPM. pr 79.3 4.5 9.8E-05 33.5 5.4 79 97-185 2-85 (99)
473 KOG4460 Nuclear pore complex, 78.4 73 0.0016 34.6 14.6 95 442-579 104-203 (741)
474 TIGR03606 non_repeat_PQQ dehyd 78.4 45 0.00097 36.3 13.7 61 587-649 30-90 (454)
475 COG3823 Glutamine cyclotransfe 78.1 65 0.0014 30.7 13.0 134 516-655 100-247 (262)
476 COG1520 FOG: WD40-like repeat 77.5 1E+02 0.0022 32.7 22.2 106 517-623 112-224 (370)
477 PF13449 Phytase-like: Esteras 76.8 99 0.0021 32.2 17.6 115 549-665 88-248 (326)
478 PF14559 TPR_19: Tetratricopep 76.0 4.6 9.9E-05 30.5 4.2 54 52-112 1-55 (68)
479 PF12768 Rax2: Cortical protei 75.7 68 0.0015 32.5 13.4 114 566-685 16-147 (281)
480 PF14779 BBS1: Ciliary BBSome 75.1 92 0.002 31.0 18.0 68 545-613 176-255 (257)
481 KOG1900 Nuclear pore complex, 74.7 62 0.0014 39.2 14.3 74 544-617 177-273 (1311)
482 COG5290 IkappaB kinase complex 74.2 69 0.0015 36.6 13.6 246 398-684 22-346 (1243)
483 PF13449 Phytase-like: Esteras 73.6 1.2E+02 0.0026 31.6 18.4 156 441-603 19-231 (326)
484 PF02333 Phytase: Phytase; In 73.3 1.3E+02 0.0028 31.9 25.8 199 446-674 58-299 (381)
485 KOG1900 Nuclear pore complex, 73.1 35 0.00076 41.2 11.8 140 522-667 96-273 (1311)
486 PF03088 Str_synth: Strictosid 72.9 36 0.00077 27.7 8.6 45 605-659 34-78 (89)
487 PF14727 PHTB1_N: PTHB1 N-term 72.5 1.5E+02 0.0032 32.1 24.1 152 403-573 36-203 (418)
488 PF11715 Nup160: Nucleoporin N 72.4 23 0.0005 39.9 10.4 66 556-621 157-253 (547)
489 KOG3522 Predicted guanine nucl 72.0 14 0.00031 42.1 8.0 107 505-617 580-698 (925)
490 smart00036 CNH Domain found in 71.6 1.3E+02 0.0027 31.0 26.2 243 403-675 12-279 (302)
491 KOG1983 Tomosyn and related SN 71.3 1.4E+02 0.0029 36.4 16.6 28 395-422 38-65 (993)
492 COG4590 ABC-type uncharacteriz 70.6 18 0.0004 38.2 7.9 161 506-676 220-396 (733)
493 KOG3522 Predicted guanine nucl 70.4 51 0.0011 37.9 11.8 147 406-576 549-699 (925)
494 TIGR02276 beta_rpt_yvtn 40-res 69.5 17 0.00037 24.2 5.4 39 555-594 1-41 (42)
495 PF11715 Nup160: Nucleoporin N 68.1 39 0.00085 38.1 11.0 37 638-674 215-256 (547)
496 PF07676 PD40: WD40-like Beta 67.8 19 0.00041 23.7 5.2 35 579-613 1-38 (39)
497 PF14269 Arylsulfotran_2: Aryl 67.1 1.6E+02 0.0034 30.3 16.8 69 547-615 145-219 (299)
498 KOG2063 Vacuolar assembly/sort 66.9 2.7E+02 0.0059 33.0 19.3 72 400-472 22-97 (877)
499 PF10168 Nup88: Nuclear pore c 65.4 2.7E+02 0.0059 32.5 25.0 87 441-535 84-181 (717)
500 PF05935 Arylsulfotrans: Aryls 65.2 80 0.0017 34.9 12.4 105 558-675 117-240 (477)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-64 Score=489.69 Aligned_cols=482 Identities=18% Similarity=0.219 Sum_probs=392.2
Q ss_pred CCCcccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh---HHHHHHHHhcCCHHHHHHHhcccccccCCcccc
Q 005342 2 HGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK 78 (701)
Q Consensus 2 ~~~~~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~ 78 (701)
.|+|+.|+ +.|+|||+.|+|+.+||.+|+.+||.|||+.+. +..|.++|++|+|+.++..+..+...++.+.+.
T Consensus 9 l~~k~lik---k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e 85 (519)
T KOG0293|consen 9 LGSKGLIK---KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE 85 (519)
T ss_pred hhhhceec---cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH
Confidence 58999999 999999999999999999999999999999994 999999999999999999998886555555544
Q ss_pred eehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccchhhhhccCCCCChhHHHHHHHHHHhh
Q 005342 79 KMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLL 158 (701)
Q Consensus 79 ~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 158 (701)
+.|++.||+|||++..|....|+.+||++..++ .++.+++++|+.-|..++.....+..........|.+|+++|+++
T Consensus 86 -a~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elsky 163 (519)
T KOG0293|consen 86 -AMFLVNKQIFLEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKY 163 (519)
T ss_pred -HHHHHHHHHHHHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999 569999999988887755322222221123667899999999999
Q ss_pred hccccccccccccccccchHHHHHHHHhCCC----CCccccchhhhhhHhhhccchhhhhhhhhhccCcccccccccccc
Q 005342 159 VKENRILQDKLIFPCVNNSALSSLIKLICPS----FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREY 234 (701)
Q Consensus 159 i~~~~~~~~~~~~~~~p~~RL~~Ll~q~~~~----c~~~~~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~~~~~~~~ 234 (701)
|||++| +|++||++||+|+..+ |.||+.-+.++| |+++.+...
T Consensus 164 i~p~il---------lP~rRLehLl~qAv~~Q~d~cvyhnsldsvsl---------l~Dh~c~~~--------------- 210 (519)
T KOG0293|consen 164 IPPNIL---------LPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSL---------LSDHFCGRL--------------- 210 (519)
T ss_pred CCHhhc---------CChHHHHHHHHHHHHHHHhHhHHhcccchhhh---------hhhcccCcc---------------
Confidence 999999 9999999999999877 888885444555 344433220
Q ss_pred cccccccccccccccccccccccccchhhcccccceeeeeecccccccccccccccccccchhhhhhcccccCccccccc
Q 005342 235 ITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSM 314 (701)
Q Consensus 235 i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~la~~i~iwd~ 314 (701)
++
T Consensus 211 ------------------------------qi------------------------------------------------ 212 (519)
T KOG0293|consen 211 ------------------------------QI------------------------------------------------ 212 (519)
T ss_pred ------------------------------cC------------------------------------------------
Confidence 00
Q ss_pred CccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 315 DKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 315 ~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
+.+..+.+..|++.|| .+.|||+ +.|.+..+|++.....+.. ..
T Consensus 213 -p~qt~qil~~htdEVW--fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl--------------------------~~ 263 (519)
T KOG0293|consen 213 -PSQTWQILQDHTDEVW--FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL--------------------------KK 263 (519)
T ss_pred -CchhhhhHhhCCCcEE--EEEEcCCCeeEeeccCCceEEEEEEecCcceee--------------------------ee
Confidence 1223345688999999 9999999 8999999999976655433 22
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.+.+|.. |..+.||||.++|++|+.|..+.+||+. +|.+.... +. ++...+.+++|.|||..+++|+.|+++.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~----tgd~~~~y-~~-~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD----TGDLRHLY-PS-GLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCC----cchhhhhc-cc-CcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3457777 9999999999999999999999999998 77665522 22 3568899999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
.||++++. ... ........|.+++++ |+++++.+ |..|++++.++...+..+.
T Consensus 338 ~wdlDgn~----------------------~~~-W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis- 393 (519)
T KOG0293|consen 338 MWDLDGNI----------------------LGN-WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS- 393 (519)
T ss_pred EecCCcch----------------------hhc-ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-
Confidence 99874431 100 112233568899998 88888877 9999999998776665554
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEec-CCCEEEEEeCCCeEEEEECCCCe
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
...+|+++++|.|| ++++.-.+..+++||+.....++.+.||+. .+..-+|.. +..+++|||+|++|+||+..+|+
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 56789999999999 999999999999999999999999999986 345557765 55799999999999999999986
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEE-EecCeEEEEECCC
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPT 667 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~s-g~Dg~I~iwd~~~ 667 (701)
++ . ...||. ..|++|+|+|... ++|+ |+||+|+||....
T Consensus 474 ll-----~-~LsGHs---~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 LL-----A-VLSGHS---KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ee-----E-eecCCc---ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 43 3 334887 9999999999765 5666 4899999998753
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-55 Score=412.25 Aligned_cols=475 Identities=19% Similarity=0.237 Sum_probs=377.2
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 88 (701)
..+|||||+|||+|..++.++++||+|++++|| ++-|.+.|.+|+||.+++.++.| ++|+++ +..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~kk-----L~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDKK-----LIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchhH-----HHHHHHHH
Confidence 678999999999999999999999999999996 99999999999999999999999 455443 36999999
Q ss_pred hhHHHhcCChhHHHHHHHhc--ccccccCChhHHHHHHHHhccccchhhhhccCCCCChhHHHHHHHHHHhhhccccccc
Q 005342 89 YCEALCRHERTEADSIFRKD--LKVFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQ 166 (701)
Q Consensus 89 ~lEll~~~~~~~a~~~L~~~--l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~ 166 (701)
.|||+|.+|...|..+||+. +..+++.+|+||-+|+.||..+.|++.+.+.. ..+++.|..+++.+..++..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999954 44567779999999999999999976544433 23888999999999999999
Q ss_pred cccccccccchHHHHHHHHhCCCCCccccchhhhhhHhhhccchhhhhhhhhhccCcccccccccccccccccccccccc
Q 005342 167 DKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKY 246 (701)
Q Consensus 167 ~~~~~~~~p~~RL~~Ll~q~~~~c~~~~~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~~~~~~~~i~~g~~~~~e~~ 246 (701)
+||+||+.||.|+ |+ ++.|...| -+|. .+..||...-.-+ ..|
T Consensus 155 -------VppSRLlaLlGQa-------------------LK---WQqHQGLL--PPGt--~iDLFRGkAA~K~--~~E-- 197 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQA-------------------LK---WQQHQGLL--PPGT--TIDLFRGKAAMKD--QEE-- 197 (508)
T ss_pred -------cChHHHHHHHHHH-------------------hh---hHhhcCCC--CCCc--eeeeccchhhhhh--hHh--
Confidence 9999999997764 44 23332222 0111 1334442211000 000
Q ss_pred cccccccccccccchhhcccccceeeeeecccccccccccccccccccchhhhhhcccccCcccccccCccceeEEEeec
Q 005342 247 LSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQI 326 (701)
Q Consensus 247 l~~~~~~~~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~la~~i~iwd~~~~~~~~~l~~h 326 (701)
.+|.. .|+.+|++ +.
T Consensus 198 ----------------------e~~Pt------------------------------~l~r~IKF-------------g~ 212 (508)
T KOG0275|consen 198 ----------------------ERYPT------------------------------QLARSIKF-------------GQ 212 (508)
T ss_pred ----------------------hhchH------------------------------Hhhhheec-------------cc
Confidence 01100 00012221 12
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
.+.+. |..|||| +.||.|.+||..+|+.... ++-. ....+..++. |.|+
T Consensus 213 KSh~E--cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----------LkYQ-----------Aqd~fMMmd~aVlci 269 (508)
T KOG0275|consen 213 KSHVE--CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----------LKYQ-----------AQDNFMMMDDAVLCI 269 (508)
T ss_pred ccchh--heeeCCCCceEeeccccceeeeehhccchhhhh----------hhhh-----------hhcceeecccceEEE
Confidence 23355 9999999 8999999999999987665 2222 1223567777 9999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC-CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
.||.|...+|+|+.||.|++|.+. +|+|.+ .+. .|...|+|+.||.|+..+++++.|.++++-
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~----tG~ClR---rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH--------- 333 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIE----TGQCLR---RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH--------- 333 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEe----cchHHH---HhhhhhccCeeEEEEccCcchhhcccccceEEEe---------
Confidence 999999999999999999999999 888866 333 689999999999999999999999999998
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeEEEE
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFI 552 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~ 552 (701)
...+|+++.. + .+|.+.|+...|+ |+.+++++ ||+|++|+.++.+++.+|... ..+|.++.
T Consensus 334 ------------GlKSGK~LKE-f-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 334 ------------GLKSGKCLKE-F-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred ------------ccccchhHHH-h-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 4477776642 4 5899999999999 99999999 999999999999999998744 55788999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342 553 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 553 ~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
.-|.+ .++++...++|+|.++ .|+.++.+.. ..+...+.+.||.|.++.+.++|+.++.+.+.+|......++
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V- 477 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV- 477 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-
Confidence 99988 8888899999999997 4778888864 234566778999999999999999999999999975433222
Q ss_pred eccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEE
Q 005342 628 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 664 (701)
Q Consensus 628 ~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd 664 (701)
|. ..|..++-+|..+.+|+ +.||.+++|.
T Consensus 478 -----hE---kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 478 -----HE---KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -----cc---ccccccccCcccchhhhhcccchhhhcC
Confidence 22 67889999999999998 7999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-44 Score=347.91 Aligned_cols=303 Identities=16% Similarity=0.197 Sum_probs=264.4
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+|...+.+|...|. |++|+|+ +.|.|+++||+.+.....+ .+
T Consensus 106 rCssS~~GH~e~Vl--~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-----------------------------~K 154 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVL--SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-----------------------------CK 154 (480)
T ss_pred eeccccCCCCCcEE--EEEecCCCceEEecCCCceEEeeccCCCCccee-----------------------------ec
Confidence 77788999999999 9999998 8999999999988776655 26
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-----CCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-----dg~~l~s~s~dg~ 464 (701)
+|.+ |.+++|+|||+.||+|+.||+|++||.. +++..- -++.+|...|++++|.| ..+++++++.||.
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk----tg~~~g--~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK----TGQQIG--RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS 228 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCC----CCCccc--ccccCcccceeEEeecccccCCCccceecccCCCC
Confidence 8999 9999999999999999999999999988 443221 15668999999999975 6679999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
++|||+ ..+.++.. + .+|..+|+|+.|- ..++++|+ |++|++|+...|.+.+.+.
T Consensus 229 vrIWd~---------------------~~~~~~~~-l-sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 229 VRIWDT---------------------KLGTCVRT-L-SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred EEEEEc---------------------cCceEEEE-e-ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhc
Confidence 999955 55565432 2 5899999999999 88999999 9999999999999999999
Q ss_pred CCCCCeEEEEEc-----------CCC--------------------------eEEEEeCCCcEEEEeCCC-CceEEeecC
Q 005342 543 NPPPIATYFILL-----------PQD--------------------------LFAFGFDDSSILVHCPCT-KKTKAKLKG 584 (701)
Q Consensus 543 ~~~~~i~~l~~s-----------pdg--------------------------~l~~gs~dg~I~iwd~~~-~~~~~~l~~ 584 (701)
+|...|+.++.+ |.+ .+++|++|.++.+|+... .+++..+.|
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 999999999877 222 499999999999999765 457888999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw 663 (701)
|..-|+.+.||||++++||+|.|..|++||.++|+ .+.++. ||. ..|+.++||.|.++|++| .|.++++|
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-----~lasfR-GHv---~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-----FLASFR-GHV---AAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcc-----hhhhhh-hcc---ceeEEEEeccCccEEEEcCCCceEEEE
Confidence 99999999999999999999999999999999985 233222 676 999999999999999996 89999999
Q ss_pred ECCCCceeeeeee----eeEEEEEeeEEee
Q 005342 664 EAPTLNHTSQVLL----ISHIMFVQIVVKF 689 (701)
Q Consensus 664 d~~~g~~~~~l~~----i~~~~fs~~~~~f 689 (701)
++++.++...++| |..+.|||+....
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999999998 9999999985543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=335.46 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=246.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
.++++||..+...+.+.++|..+|. |++|||| +.||+|++||..+|++.-.
T Consensus 137 ~TvR~WD~~TeTp~~t~KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~~g~-------------------- 194 (480)
T KOG0271|consen 137 TTVRLWDLDTETPLFTCKGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR-------------------- 194 (480)
T ss_pred ceEEeeccCCCCcceeecCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCcccc--------------------
Confidence 7899999999999999999999999 9999999 8999999999999876543
Q ss_pred CCCCCCCccccCCCc-eEEEEEcC-----CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLP-----DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 453 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~sp-----dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg 453 (701)
.|.+|.. |.+++|.| ..++||+++.||+++|||+. .+.+.. ...+|+..|+|+.|--+|
T Consensus 195 --------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~----~~~~~~---~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 195 --------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK----LGTCVR---TLSGHTASVTCVRWGGEG 259 (480)
T ss_pred --------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc----CceEEE---EeccCccceEEEEEcCCc
Confidence 3568888 99999976 57899999999999999997 666665 446899999999998766
Q ss_pred CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------------------
Q 005342 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------------------ 515 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------------------ 515 (701)
++++|+.|++|++|+... |.+... + .+|...|+.++.+
T Consensus 260 -liySgS~DrtIkvw~a~d---------------------G~~~r~-l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALD---------------------GKLCRE-L-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred -eEEecCCCceEEEEEccc---------------------hhHHHh-h-cccchheeeeeccchhhhhccccccccccCC
Confidence 689999999999996533 333221 1 3455555554443
Q ss_pred --------------------CCEEEEEe-CCeEEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342 516 --------------------GSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (701)
Q Consensus 516 --------------------~~~l~s~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd 572 (701)
++.+++|+ |.++.+|+-. +.+++..+.+|..-|..+.||||+ +||+++.|..|++||
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 34699999 8999999965 445888999999999999999999 999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
.++|+.+.+|+||-+.|..++|+.|.++|+|||.|.++++||+++.+. ...++ ||. ..|.++.|+|||..+
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~DLp-Gh~---DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQDLP-GHA---DEVFAVDWSPDGQRV 466 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cccCC-CCC---ceEEEEEecCCCcee
Confidence 999999999999999999999999999999999999999999999532 12233 565 899999999999999
Q ss_pred EEE-ecCeEEEEE
Q 005342 653 LSI-HEGQIDVYE 664 (701)
Q Consensus 653 ~sg-~Dg~I~iwd 664 (701)
++| .|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 996 899999994
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-38 Score=313.20 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=247.7
Q ss_pred cCcceeeeEEEEccC--------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCcccc---CC
Q 005342 326 IMDWWVPYCINVMPN--------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN---DN 392 (701)
Q Consensus 326 h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~---~h 392 (701)
|...|. +.+|+|- +.|.+.++|++... .+...+ .-.|+. ..|.+ ..
T Consensus 177 ~~~~V~--~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~---------~lrh~~----------~~~~~s~~~n 235 (524)
T KOG0273|consen 177 HESEVF--ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL---------VLRHCI----------REGGKSVPSN 235 (524)
T ss_pred CCCceE--EEecCchhhhhhhccCCccceeeeeehhhccccchhh---------hhhhhh----------hhhcccCCcc
Confidence 888999 9999997 78999999999752 111110 011111 11111 22
Q ss_pred CceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
..|++++|+.+|..||+|+.||.+++|+.. .+... .+..|.++|.++.|+.+|.||++++.||++.+||
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~----G~l~~----tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd--- 304 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD----GNLIS----TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD--- 304 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC----chhhh----hhhccCCceEEEEEcCCCCEEEeccCCccEEEEe---
Confidence 339999999999999999999999999986 44322 3456999999999999999999999999999995
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 550 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~ 550 (701)
..+|+..+. + .-|..+-.++.|- ...+++++ |+.|+++-+....++.++.+|..+|.+
T Consensus 305 ------------------~~~g~~~q~-f-~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 305 ------------------AHTGTVKQQ-F-EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred ------------------ccCceEEEe-e-eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence 466665543 2 3466665678888 77888888 999999999888999999999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEECCCCee
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg---------~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
+.|.|.| +|+++|.|++++||++......+.+.+|...|..+.|+|+| ..+++++.|++|++||+..|.+
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999 99999999999999999999999999999999999999965 4789999999999999999853
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
+ ..+. .|+ .+|++++|||+|+++|+| .||.|.||++++++.++++.+ |..++|+..
T Consensus 445 i-----~~f~-kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 445 I-----HTLM-KHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA 504 (524)
T ss_pred e-----Eeec-cCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCC
Confidence 3 3233 454 899999999999999998 799999999999999999998 899999744
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-39 Score=315.17 Aligned_cols=270 Identities=16% Similarity=0.174 Sum_probs=237.6
Q ss_pred ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342 325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR 396 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~ 396 (701)
+.+.++. .+.||+| +-+|.++||+..+...+.+ |.||.. |.
T Consensus 173 gd~rPis--~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~-----------------------------l~gH~~~v~ 221 (459)
T KOG0272|consen 173 GDTRPIS--GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT-----------------------------LRGHTSRVG 221 (459)
T ss_pred cCCCcce--eeEeecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------Eecccccee
Confidence 4456777 8999998 8899999999988755554 467888 99
Q ss_pred EEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 397 ESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 397 ~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
++.|+|. +..+|||+.||++++|++. ...... .+.+|..+|..++|+|+|++|++++.|.+-++||+
T Consensus 222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~----~e~~l~---~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~---- 290 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATASADGTVKLWKLS----QETPLQ---DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL---- 290 (459)
T ss_pred eEEEccCCCccceeeeccCCceeeeccC----CCcchh---hhhcchhhheeeeecCCCceeeecccccchhhccc----
Confidence 9999997 6799999999999999997 332222 45679999999999999999999999999999966
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.++..+- ...+|...|.+++|. |..+++|+ |..-+|||+++|+++..+.+|..+|.++
T Consensus 291 -----------------~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V 351 (459)
T KOG0272|consen 291 -----------------ETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV 351 (459)
T ss_pred -----------------ccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence 4444221 336999999999999 99999999 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
+|+|+| .+|+|+.|++++|||++....+.++.+|.+-|+.|.|+| .|.+|+|+|.|++++||...++. +++ .
T Consensus 352 ~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-----~~k-s 425 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-----PLK-S 425 (459)
T ss_pred eECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-----cch-h
Confidence 999999 999999999999999999999999999999999999999 78899999999999999999975 333 3
Q ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
..||. +.|.++.++||+.+++++ .|+++++|.
T Consensus 426 LaGHe---~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 426 LAGHE---GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hcCCc---cceEEEEeccCCceEEEeccCceeeecc
Confidence 33776 999999999999999995 899999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=282.08 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=236.7
Q ss_pred ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
..|+||.+ |.++.|++|++++++++.||.+.|||..+ +.+.+.+.+ ...-|..++|+|.|+++++|+-|+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl----~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPL----PSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccc---ccceeEEec----CceeEEEEEECCCCCeEEecCcCcee
Confidence 35789999 99999999999999999999999999974 455555555 46789999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
.||++.+. |.+....+.+.+ .+|.+.+.|..|- +..|++++ |.+..+||+++++.+..|.+
T Consensus 122 siy~ls~~----------------d~~g~~~v~r~l-~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 122 SIYPLSTR----------------DAEGNVRVSREL-AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred EEEecccc----------------cccccceeeeee-cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence 99988542 212222333334 5899999999999 88899998 99999999999999999999
Q ss_pred CCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 544 PPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 544 ~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
|.+.|.+++++| ++ .+++|+-|+..++||++.+..+++|.||.+.|+++.|.|+|.-+++||+|+++++||++....+
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 999999999999 77 9999999999999999999999999999999999999999999999999999999999997543
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF 689 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f 689 (701)
.... |.+...+|++++||..|++|.+| .|.++.+||.-+++.+..+.| |+.+..+|+...+
T Consensus 265 a~ys-------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 265 AVYS-------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eeec-------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 3221 11112789999999999999997 899999999999999999999 9999999986554
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=281.70 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=236.8
Q ss_pred ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
.+..++++|+++|. .++..+. +.|.++.+|++....... |. +..-|
T Consensus 6 ~l~~tl~gh~d~Vt--~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-------------G~-----------~~r~~ 59 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVT--ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-------------GV-----------PVRRL 59 (315)
T ss_pred eeeeeecCCCceEE--EEEeecCCCceEEEcccceEEEEEEeccCcccc-------------Cc-----------eeeee
Confidence 34567899999999 7777665 899999999997653221 11 23337
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.||.. |..+..++||++.++++.|+++++||+. +++... .+.+|...|.+++|+||.+.+++|+.|+++++|
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~----~g~~t~---~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA----TGESTR---RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEec----CCcEEE---EEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 78998 9999999999999999999999999998 665544 445799999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
|. ..+...+. -...+...|.|+.|+ ..+|++++ |+++++||+++.+....+.+
T Consensus 133 nt---------------------~g~ck~t~-~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 133 NT---------------------LGVCKYTI-HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred ee---------------------cccEEEEE-ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 75 33332221 112347899999999 45789999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
|.+.++.+++|||| +.++|+.||.+.+||++.++.+..+. |...|++++|+|+..+|+.+. +..|+|||+.++..+.
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVE 268 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhh
Confidence 99999999999999 99999999999999999999988876 888999999999987777555 4569999999976554
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
...+...-...........+++|++||..|++| .|+.|++|.+..
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 333331111011112456789999999999999 899999999753
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.2e-37 Score=299.52 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=224.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA 377 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (701)
|.+++|++++...+.++.+|...+. ++.|+|. +.||++++|++.+...+..
T Consensus 197 G~~kvW~~~~~~~~~~l~gH~~~v~--~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------------ 256 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLRGHTSRVG--AAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------------ 256 (459)
T ss_pred CceeEeecCCcceeEEEecccccee--eEEEccCCCccceeeeccCCceeeeccCCCcchhh------------------
Confidence 9999999999999999999999999 9999997 8999999999988776665
Q ss_pred ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
|.+|.. |..++|+|+|++|+|++.|.+-++||+. ++.... -..+|...|.+++|.|||..+
T Consensus 257 -----------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~----tk~ElL---~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 257 -----------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE----TKSELL---LQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred -----------hhcchhhheeeeecCCCceeeecccccchhhcccc----cchhhH---hhcccccccceeEecCCCcee
Confidence 346677 9999999999999999999999999998 443222 335799999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~ 533 (701)
++||.|..-+|||+ .+|.++- +..+|..+|.+++|+ |..+++|+ |++++|||++
T Consensus 319 ~tGGlD~~~RvWDl---------------------Rtgr~im--~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDL---------------------RTGRCIM--FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred eccCccchhheeec---------------------ccCcEEE--EecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 99999999999955 6666443 225899999999999 88899999 9999999999
Q ss_pred CCcEEEEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 534 TFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
..+.+.++.+|..-|+.+.|+|+ | +|++++.|++++||..++..+++.+.||.+.|.+++++||+++++|++.|.+|+
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 99999999999999999999994 4 999999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 005342 612 VWD 614 (701)
Q Consensus 612 vwd 614 (701)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=268.38 Aligned_cols=282 Identities=14% Similarity=0.166 Sum_probs=240.7
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+..++|++|.+.|. ++.|++| +.||.+.|||..|......+ .
T Consensus 46 ~~rr~LkGH~~Ki~--~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----------------------------p 94 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIY--AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-----------------------------P 94 (343)
T ss_pred eeEEEeccccccee--eeEecCCcCeEEeeccCCeEEEEEcccccceeEE-----------------------------e
Confidence 44478999999999 9999999 99999999999887665552 1
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
-... |...+|+|.|+++|+|+-|....||++......+... +.-.+.+|.+.+.|+.|.+|+ .|+++|.|.+..+||
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~-v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR-VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWD 172 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce-eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEE
Confidence 2234 8899999999999999999999999997432222222 222456899999999999866 589999999999995
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
+ ++|+..+. + .+|.+.|.+++++ ++.+++|+ |+..++||++.+.++++|.+|.
T Consensus 173 i---------------------e~g~~~~~-f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe 229 (343)
T KOG0286|consen 173 I---------------------ETGQQTQV-F-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE 229 (343)
T ss_pred c---------------------ccceEEEE-e-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc
Confidence 5 66665543 3 5899999999998 88999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
+.|++++|.|+| -+++|++|++.++||++..+.+..+.. ...+|++++||..|++|.+|..|.++.|||.-.++...
T Consensus 230 sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg 309 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG 309 (343)
T ss_pred cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE
Confidence 999999999999 999999999999999999998888873 23489999999999999999999999999998876332
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
...||. +.|.++..+|||.-+++| .|.+++||.
T Consensus 310 ------~L~GHe---NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 ------VLAGHE---NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------EeeccC---CeeEEEEECCCCcEEEecchhHheeecC
Confidence 333776 999999999999999996 899999994
No 11
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=296.69 Aligned_cols=425 Identities=14% Similarity=0.170 Sum_probs=295.9
Q ss_pred cchhhhhhHhhhccchhhhhhhhhhccCccc---ccccccccccccccccccccccccccccccccccchhhccccccee
Q 005342 195 KEELIYLIHQFLNEEEFKETLHKLEQETRVF---FDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKY 271 (701)
Q Consensus 195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~---~~~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~ 271 (701)
+.|+++++.|+|+++||.++...+|.|+|+- .++..|..+++.|+|+.++.-+......+ ....+...|.+.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 5699999999999999999999999999988 44889999999999999998777443222 3334444558999999
Q ss_pred eeeeccc---cccccccc-----------------------c---------------cccccccchhhhhhcccccCccc
Q 005342 272 LEAVDRQ---QKLPSDFA-----------------------E---------------RAHLFDDFKVLVERNPMLQDKLK 310 (701)
Q Consensus 272 ~~~~~~~---~~~~~~~~-----------------------d---------------r~~~~~~~~~l~~~~~~la~~i~ 310 (701)
+|.+... +++..... + |-.+++.+.++++.+-++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~ill----- 170 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILL----- 170 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcC-----
Confidence 9887322 00000000 0 333333333333333222
Q ss_pred ccccCccceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+.+++.+.+++........|+ |+. +-|. +.++ ....| ....++.. +.+.+.
T Consensus 171 ----P~rRLehLl~qAv~~Q~d~cv-yhn-slds-vsll--~Dh~c---------~~~qip~q-----------t~qil~ 221 (519)
T KOG0293|consen 171 ----PKRRLEHLLEQAVKYQRDSCV-YHN-SLDS-VSLL--SDHFC---------GRLQIPSQ-----------TWQILQ 221 (519)
T ss_pred ----ChHHHHHHHHHHHHHHHhHhH-Hhc-ccch-hhhh--hhccc---------CcccCCch-----------hhhhHh
Confidence 233444444332222221111 100 0010 1100 00111 00111111 455688
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
.|.+ ||.+.||++|++||+++.|.+..+|.+.. ....++..+..+|..+|..+.||||.+++++|+.|..+.+||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~----d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY----DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec----CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 9999 99999999999999999999999999863 222444446678999999999999999999999999999995
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-C
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-P 545 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~ 545 (701)
. .+|.+... +..++...+.+.+|. |..+++|+ |++|..||+. |......++. .
T Consensus 298 v---------------------~tgd~~~~-y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~ 354 (519)
T KOG0293|consen 298 V---------------------DTGDLRHL-YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD 354 (519)
T ss_pred C---------------------Ccchhhhh-cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc
Confidence 5 55554432 333556788899998 88999999 9999999995 4444444443 3
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
..|.+++.++|| ++++.+.|..|++++..+........ ...+|++.+.|.||+++.+.-.+..|++||++....
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---- 429 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---- 429 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH----
Confidence 568999999999 88888899999999988766554444 446899999999999999999999999999996422
Q ss_pred eeeeccCCCCCCCCCeEEEEEc-CCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342 625 FLHSFQTGLVPETTIVNHIQFH-PDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF 689 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f 689 (701)
+.... ||... .-+..-+|. -+..++++| .|+.|+||+-.+|+++.+++| |+.++|+|....+
T Consensus 430 -v~kY~-Ghkq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 430 -VRKYF-GHKQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred -HHHhh-ccccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 22122 33211 234444454 455888887 899999999999999999999 9999999886644
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-34 Score=260.50 Aligned_cols=268 Identities=14% Similarity=0.180 Sum_probs=224.1
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEEEEEcCCCCeEEEEcCCCcEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRESTSLPDADSAVCAKSLEKSVN 418 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~l~~spdg~~l~s~s~d~~v~i 418 (701)
+.|.|||+|...+|.|.+++ .|.. |+.+...||++.||+++. ..|++
T Consensus 17 ~YDhTIRfWqa~tG~C~rTi------------------------------qh~dsqVNrLeiTpdk~~LAaa~~-qhvRl 65 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTI------------------------------QHPDSQVNRLEITPDKKDLAAAGN-QHVRL 65 (311)
T ss_pred cCcceeeeeehhcCeEEEEE------------------------------ecCccceeeEEEcCCcchhhhccC-CeeEE
Confidence 67999999999999999985 3444 999999999999999988 78999
Q ss_pred EeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 419 w~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
||++..+. ..+ ..+.+|.+.|+++.|.-||+.+++||.||+++|||++.. .+.
T Consensus 66 yD~~S~np----~Pv-~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---------------------~~q- 118 (311)
T KOG0315|consen 66 YDLNSNNP----NPV-ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------------------SCQ- 118 (311)
T ss_pred EEccCCCC----Cce-eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---------------------ccc-
Confidence 99984322 121 144578999999999999999999999999999987431 111
Q ss_pred ecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 499 NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
+.+ .|..+|+++..+ ...|++|. +|.|++||+.+..+...+. .....|.++.+.||| +++.+...|..++|++
T Consensus 119 R~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 119 RNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred hhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 112 467899999999 55788888 8999999998887666554 335678999999999 9999999999999998
Q ss_pred CCC------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 574 CTK------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 574 ~~~------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
-+. +++.+++.|++.+..+.+|||+++||++|.|.+++||+..+. ......+. +|. ..++..+||.
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~----gh~---rWvWdc~FS~ 268 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT----GHQ---RWVWDCAFSA 268 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee----cCC---ceEEeeeecc
Confidence 754 456778899999999999999999999999999999999985 12222333 665 8999999999
Q ss_pred CCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 648 DQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 648 dg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
||.||+++ .|+.+++|++..++.++.+.+
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCC
Confidence 99999996 899999999999999999988
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=277.13 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=243.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
.+.+.+.+|...|+ .+-|.|+ +.|.+|++||..+|++.+. |+
T Consensus 99 ~l~~~l~g~r~~vt--~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-----------------------------Lr 147 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVT--RVIFHPSEALVVSASEDATIKVFDTETGELERS-----------------------------LR 147 (406)
T ss_pred Cchhhhhcccccee--eeeeccCceEEEEecCCceEEEEEccchhhhhh-----------------------------hh
Confidence 45566778999999 9999999 6899999999999998666 35
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
||.+ |..++|+..|+++|+++.|-.+++||.++ ..+|.+ ...+|...|.++.|-|.|.++++++.|.+|+.|+
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~---~~~c~k---s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT---FFRCIK---SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred ccccceeEEEEecCccEEEecCCccchhheeHHH---HHHHHH---HhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 7777 99999999999999999999999999973 234444 4457899999999999999999999999999995
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
+ ++|.++.. + .+|...|..++.+ |..+++++ |.++++|-+.++++...+..|..
T Consensus 222 ~---------------------~tg~cv~t-~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh 278 (406)
T KOG0295|consen 222 C---------------------DTGYCVKT-F-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH 278 (406)
T ss_pred c---------------------ccceeEEe-c-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence 4 77776653 4 5888999999999 88889999 99999999999999899999999
Q ss_pred CeEEEEEcC--------------CC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 547 IATYFILLP--------------QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 547 ~i~~l~~sp--------------dg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
+|-+++|.| ++ ++.+++.|++|++||+.++.++.++.||...|..++|+|.|+||+|+.+|+++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcE
Confidence 999999876 23 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
+|||++++. |.+.+. .|. .-|+++.|+.+..++++| -|.++++|..
T Consensus 359 rvwdl~~~~--cmk~~~----ah~---hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQ--CMKTLE----AHE---HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccce--eeeccC----CCc---ceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999964 333333 443 789999999999999997 6999999974
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-33 Score=277.81 Aligned_cols=349 Identities=15% Similarity=0.172 Sum_probs=260.1
Q ss_pred CcccccccCccc-ee-EEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 307 DKLKFPSMDKSR-LL-SLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 307 ~~i~iwd~~~~~-~~-~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
++|+|||....+ .+ ..++.-.+.|. .++|++| +.++...++-+.+|...-. +.||..
T Consensus 81 G~vRIWdtt~~~hiLKnef~v~aG~I~--Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe----------i~GhSr 148 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILKNEFQVLAGPIK--DISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE----------ITGHSR 148 (603)
T ss_pred CcEEEEeccCcceeeeeeeeecccccc--cceeCCCCcEEEEEecCccceeEEEEecCCCccce----------eeccce
Confidence 999999987632 22 45666778899 9999999 4444444444445554444 445544
Q ss_pred --------------ccccCC-CC------CCCcc---ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce
Q 005342 376 --------------DASSGD-DS------NDSSC---FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC 430 (701)
Q Consensus 376 --------------~~s~~D-~~------~~~~~---l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~ 430 (701)
+++++| .+ ++... ++.|.. |+++.|+|||.++|+++.||++.+||=. +++.
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk----tge~ 224 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK----TGEK 224 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC----CccE
Confidence 666663 33 12222 778999 9999999999999999999999999987 4433
Q ss_pred e-EeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc----ccccccc--------------ce----eeE
Q 005342 431 R-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----SLEEENV--------------NM----ESQ 487 (701)
Q Consensus 431 ~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~----~~g~~~~--------------~~----~i~ 487 (701)
. .+. ...+|.+.|.+++|+||+..+++++.|.+++|||+.+... +.|..+. .+ .+.
T Consensus 225 vg~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 2 222 2347999999999999999999999999999999988876 1222111 11 255
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE-----------EEec-----------
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-----------ATFA----------- 542 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~-----------~~~~----------- 542 (701)
.+++....... ...+|...|++++.+ +.+|++|+ ||.|.-||..++..- ..+.
T Consensus 304 ~ln~~d~~~~~--~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 304 YLNPSDPSVLK--VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EecccCCChhh--eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 66666666332 236999999999999 89999999 999999998755321 0000
Q ss_pred -----------------------------------------------------------CCCCCeEEEEEcCCC-eEEEE
Q 005342 543 -----------------------------------------------------------NPPPIATYFILLPQD-LFAFG 562 (701)
Q Consensus 543 -----------------------------------------------------------~~~~~i~~l~~spdg-~l~~g 562 (701)
...-...+++++|++ .+++|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 001123678899999 99999
Q ss_pred eCCCcEEEEeCCCCceEE--eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 563 FDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 563 s~dg~I~iwd~~~~~~~~--~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+.||.|++|.+..+.... .+..|.++|+++++|||+.|||+|...+.+.+||+.+.+... .. . ..|+ ..|
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~---w-~FHt---akI 533 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NR---W-AFHT---AKI 533 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ce---e-eeee---eeE
Confidence 999999999998765432 345599999999999999999999999999999999975311 11 2 2354 899
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEE
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMF 682 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~f 682 (701)
++++|+|++.++|+| -|..|.||++.+-...-.+.+ |+++.|
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 999999999999997 799999999987554444444 888888
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-33 Score=292.00 Aligned_cols=259 Identities=16% Similarity=0.219 Sum_probs=216.2
Q ss_pred ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc---cC-----
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS---SG----- 380 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~----- 380 (701)
+.-|..++......+. |..|++| -.|..|++|.+...+... +++...+.- .+
T Consensus 367 pSic~YT~~nt~~~v~--ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-----------lk~~~~l~~~d~~sad~~~ 433 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVT--CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-----------LKDASDLSNIDTESADVDV 433 (707)
T ss_pred CcEEEEEEEEcCCcce--eEeecCCcchhhccccccEEEEEecchhhhcc-----------ccchhhhccccccccchhh
Confidence 4456666666666688 9999999 688999999998653211 111111000 00
Q ss_pred ---CCC--CCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342 381 ---DDS--NDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 381 ---D~~--~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~ 454 (701)
|.. .+...+.||.+ |....|+|+.++|++|+.|+++++|.+. +..+.. .+.+|..+|+++.|+|-|-
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~----t~s~~V---~y~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD----TWSCLV---IYKGHLAPVWDVQFAPRGY 506 (707)
T ss_pred hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecc----cceeEE---EecCCCcceeeEEecCCce
Confidence 111 12333889999 9999999999999999999999999998 555554 4468999999999999999
Q ss_pred EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEe
Q 005342 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd 531 (701)
|++++|.|++-++|... ...... +..+|.+.|.|+.|+ ..++++|+ |.++++||
T Consensus 507 YFatas~D~tArLWs~d---------------------~~~PlR--ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWD 563 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTD---------------------HNKPLR--IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWD 563 (707)
T ss_pred EEEecCCCceeeeeecc---------------------cCCchh--hhcccccccceEEECCcccccccCCCCceEEEEE
Confidence 99999999999999652 222221 225899999999999 88999999 99999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
..+|..++.|.||.++|.+++|||+| ++++|++||.|.+||+.+++.+..+.+|++.|.++.||.||..||+||.|++|
T Consensus 564 v~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 564 VSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred cCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCC
Q 005342 611 CVWDAVG 617 (701)
Q Consensus 611 ~vwd~~~ 617 (701)
++||+..
T Consensus 644 ~lWD~~~ 650 (707)
T KOG0263|consen 644 RLWDLTK 650 (707)
T ss_pred EEEEchh
Confidence 9999876
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=292.47 Aligned_cols=330 Identities=15% Similarity=0.197 Sum_probs=259.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCcc-ccccccccCCCCCCCCCCcc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSN-LRYASSILTDKPNQEGRPLD 376 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 376 (701)
+.+++||+..+.+.+.+++|++.|+ .+.|+|+ ..|+++++||+.++.. +.+
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gGvVs--sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~----------------- 187 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGGVVS--SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT----------------- 187 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCceEE--EEEeCCccchhheeecCCCceEEEEEcccCchHHHH-----------------
Confidence 9999999999999999999999999 9999999 7899999999986543 333
Q ss_pred cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC---
Q 005342 377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--- 452 (701)
Q Consensus 377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--- 452 (701)
+..|.+ |++++|++|+..+++++.|..+.+||+. ..++.. .+| -...+.++.+-++
T Consensus 188 ------------~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~----~~~~l~-~lp---~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 188 ------------MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV----QYKKLK-TLP---LYESLESVVRLREELG 247 (775)
T ss_pred ------------HHhhhhheeeeeeccCCceEEEeccCcEEEEeehh----hhhhhh-eec---hhhheeeEEEechhcC
Confidence 357888 9999999999999999999999999996 222222 122 1356777777777
Q ss_pred --CCEEEEEECCCcEEEEecCCCCc------cccccccc----------------e------------------------
Q 005342 453 --GDFLVALTQTATHKLWKWQSNKQ------SLEEENVN----------------M------------------------ 484 (701)
Q Consensus 453 --g~~l~s~s~dg~i~vwd~~~~~~------~~g~~~~~----------------~------------------------ 484 (701)
|.+++++|.+|.+++||.++... +++..... -
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence 67999999999999999887765 11110000 0
Q ss_pred -------------------eeEEeeCCCCeEEeecccCCCCCCeEEEE-ec-CCEEEEEe-CCeEEEEeCCCCcE----E
Q 005342 485 -------------------ESQLYQPSSKLVMTNDIAADPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETFQT----L 538 (701)
Q Consensus 485 -------------------~i~~~d~~~~~~~~~~~~~~~~~~v~~l~-~s-~~~l~s~s-dg~I~iwd~~~~~~----~ 538 (701)
.+++|+..+..+. +..+|...|.++. ++ |.+|++|+ |.++++|-++++.. +
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 0455554444433 2246777777776 33 66777777 77777775522110 0
Q ss_pred ----------------------------------------------------EEecCCCCCeEEEEEcCCC-eEEEEeCC
Q 005342 539 ----------------------------------------------------ATFANPPPIATYFILLPQD-LFAFGFDD 565 (701)
Q Consensus 539 ----------------------------------------------------~~~~~~~~~i~~l~~spdg-~l~~gs~d 565 (701)
.+...|...|++++++|+. +||+||.|
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 0112467788999999999 99999999
Q ss_pred CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (701)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~ 645 (701)
.+.+||++.......++.||+..|++|.|+|..+.++|+|.|++|+||.+.+.. |.+.+. ||. ..|..++|
T Consensus 485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS--ClkT~e----GH~---~aVlra~F 555 (775)
T KOG0319|consen 485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS--CLKTFE----GHT---SAVLRASF 555 (775)
T ss_pred cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce--eeeeec----Ccc---ceeEeeee
Confidence 999999999999999999999999999999999999999999999999999965 444444 777 99999999
Q ss_pred cCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 646 HPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 646 spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
-.+|+.|+++ .||-+++|++.+++|++++.. |.+++-+|..-
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 9999999995 899999999999999999998 77777766544
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=285.00 Aligned_cols=329 Identities=17% Similarity=0.210 Sum_probs=253.3
Q ss_pred CcccccccCccce--eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC-----------------------
Q 005342 307 DKLKFPSMDKSRL--LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV----------------------- 354 (701)
Q Consensus 307 ~~i~iwd~~~~~~--~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~----------------------- 354 (701)
..+++|++...+- .+.+.+|.+.|. .+.|..+ +.||.+.+|.....
T Consensus 167 ~s~rl~~v~~~k~~~~~~l~gHkd~Vv--acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 167 LSARLFGVDGNKNLFTYALNGHKDYVV--ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ceEEEEEeccccccceEeccCCCcceE--EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 6788888877666 677899999999 9999988 99999999987621
Q ss_pred cc-ccccccccCCCCCCCC----------CCc---ccccC-CCC---------CCCccccCCCc-eEEEEEcCCCCeEEE
Q 005342 355 SN-LRYASSILTDKPNQEG----------RPL---DASSG-DDS---------NDSSCFNDNNQ-SRESTSLPDADSAVC 409 (701)
Q Consensus 355 ~~-~~~~~~~~~~~~~~~~----------~~~---~~s~~-D~~---------~~~~~l~~h~~-V~~l~~spdg~~l~s 409 (701)
+. .....-.+.++..+.. |+. ++++- .+. +..++|.-... |..++|+..|..||.
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence 00 0000000000001110 100 11111 000 12222433444 888999999999999
Q ss_pred EcCC-CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342 410 AKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 488 (701)
Q Consensus 410 ~s~d-~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~ 488 (701)
|+.. |.+-+|+.+ ..... +...+|...+.++++||||+++++|+.||.|+|||
T Consensus 325 g~~klgQLlVweWq----sEsYV---lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn------------------- 378 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQ----SESYV---LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN------------------- 378 (893)
T ss_pred cCCccceEEEEEee----cccee---eeccccccceeeEEECCCCcEEEeccCCCcEEEEe-------------------
Confidence 8765 789999987 33222 24467999999999999999999999999999994
Q ss_pred eeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEEe
Q 005342 489 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg-~l~~gs 563 (701)
..+|.|..+ + ..|...|+.+.|+ |+.+++.+ ||+|+.||+...+..++|..+. -...|++..|.| .+.+|+
T Consensus 379 --~~SgfC~vT-F-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 379 --TQSGFCFVT-F-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred --ccCceEEEE-e-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 477776643 4 5899999999999 99999999 9999999999999999998553 345899999999 999999
Q ss_pred CCC-cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE
Q 005342 564 DDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 642 (701)
Q Consensus 564 ~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~ 642 (701)
.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|.+|++||+-.... ..++++ + . ..+..
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~-i---~----sdvl~ 525 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLE-I---R----SDVLA 525 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEe-e---c----cceeE
Confidence 888 799999999999999999999999999999999999999999999999977421 123443 1 1 77999
Q ss_pred EEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 643 v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
++|+|||+.||++ -||.|.+||+..+..+.++.|
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 9999999999996 799999999988877766665
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-32 Score=256.18 Aligned_cols=265 Identities=15% Similarity=0.180 Sum_probs=221.2
Q ss_pred cccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccC-CCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~-~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
.|++|++ |..++..+. ...+++++.|.++.+|++.... ..|...+ .+.+|...|..+..++||++.++++.|+.
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r---~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR---RLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee---eeeccceEecceEEccCCceEEeccccce
Confidence 3789999 999999887 5688999999999999996431 2232233 45679999999999999999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+++||+ .+|+.... + .+|...|.+++++ ++.+++|+ |.+|.+||+... +..++
T Consensus 87 lrlWDl---------------------~~g~~t~~-f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~ 142 (315)
T KOG0279|consen 87 LRLWDL---------------------ATGESTRR-F-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTI 142 (315)
T ss_pred EEEEEe---------------------cCCcEEEE-E-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEE
Confidence 999966 45443322 3 4899999999999 78899999 999999999554 44444
Q ss_pred cCC--CCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 542 ANP--PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 542 ~~~--~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
..+ ...|.|+.|+|+ . .|++++.|+++++||+++.+....+.||++.++.+++||||...++|+.||.+.+||++
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 433 788999999999 4 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------------eeEEEEE
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------------ISHIMFV 683 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------------i~~~~fs 683 (701)
.++. +..+ ++. ..|++++|+|+..+|+.+.+..|+|||++++.++..+.. ..+++||
T Consensus 223 ~~k~-----lysl--~a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 223 EGKN-----LYSL--EAF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred CCce-----eEec--cCC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 9863 3323 222 889999999999999988888899999999998887765 4577888
Q ss_pred eeEEee
Q 005342 684 QIVVKF 689 (701)
Q Consensus 684 ~~~~~f 689 (701)
++..-.
T Consensus 293 ~dG~tL 298 (315)
T KOG0279|consen 293 ADGQTL 298 (315)
T ss_pred CCCcEE
Confidence 764433
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-33 Score=296.34 Aligned_cols=244 Identities=16% Similarity=0.203 Sum_probs=210.2
Q ss_pred CCceEEEEEcCCCCeEEEEcCCCcEEEEeccccC-----CCCceeEe-------------------ecCCCCCCCCEEEE
Q 005342 392 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSECRTL-------------------LLPDNSFGGRVVRL 447 (701)
Q Consensus 392 h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~-----~~~~~~~l-------------------~~~~~~~~~~v~~l 447 (701)
+..++|..|++|+..||.|-.|..|++|.+.... .......+ .-.+.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3449999999999999999999999999987210 00000000 00123899999999
Q ss_pred EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (701)
Q Consensus 448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d 524 (701)
.|+|+.++|+++|.|+++++|.+ .+..++. ...+|..+|+++.|+ |-++|+++ |
T Consensus 458 sFsPd~rfLlScSED~svRLWsl---------------------~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSL---------------------DTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred eecccccceeeccCCcceeeeec---------------------ccceeEE--EecCCCcceeeEEecCCceEEEecCCC
Confidence 99999999999999999999966 4444332 225999999999999 99999999 9
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
++.++|......+.+.+.+|-+.|.|+.|+|++ ++++||.|.++++||+.+|..++.|.||.++|.+++|||+|++||+
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
|+.||.|.+||+.+|+++. . +. +|. +.|.++.||.||..||+| .|++|++||+.+
T Consensus 595 g~ed~~I~iWDl~~~~~v~--~---l~-~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLVK--Q---LK-GHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCCcEEEEEcCCCcchh--h---hh-ccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999986432 2 22 555 999999999999999996 899999999854
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-31 Score=275.59 Aligned_cols=308 Identities=13% Similarity=0.145 Sum_probs=250.2
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEcc--C------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMP--N------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fsp--d------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
+...++.++.-.+++.+.-....|. .++|+. | +.-|.+-||++++..-+..+
T Consensus 287 G~f~LyelP~f~lih~LSis~~~I~--t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ------------------ 346 (893)
T KOG0291|consen 287 GEFGLYELPDFNLIHSLSISDQKIL--TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ------------------ 346 (893)
T ss_pred CeeEEEecCCceEEEEeecccceee--EEEecccCCEEEEcCCccceEEEEEeeccceeeec------------------
Confidence 7777999999999999988777888 888884 4 66789999999987665541
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
.+|.. +++++++|||+++|+|+.||.|++||.. .+-|.. ++..|+..|+.+.|+..|+.++
T Consensus 347 -----------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----SgfC~v---TFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 347 -----------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----SGFCFV---TFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred -----------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----CceEEE---EeccCCCceEEEEEEecCCEEE
Confidence 37777 9999999999999999999999999998 777777 6678999999999999999999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-CeEEEEeCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLE 533 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g~I~iwd~~ 533 (701)
+.+-||+|+.||+. ....... +.........|++.+ |..+.+|+ | =.|.+|+++
T Consensus 409 ssSLDGtVRAwDlk---------------------RYrNfRT-ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLK---------------------RYRNFRT-FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EeecCCeEEeeeec---------------------ccceeee-ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 99999999999773 2222211 222334456678887 77777777 6 589999999
Q ss_pred CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
||+.+-.+.||.++|.+++|+|+| .+++||.|.+|++||+-.. ..+.++. +...+..++|+|||+-||+++-||.|.
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEE
Confidence 999999999999999999999999 9999999999999998654 3455555 677899999999999999999999999
Q ss_pred EEECCCCeeeee----e-------eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 612 VWDAVGWKKLCS----K-------FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 612 vwd~~~g~~~~~----~-------~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
+||.+.+..... + ....+...+.......+.+++|+||..+++| ..+.|+|||+.++-+++.+.
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence 999987543210 0 0011111111223678999999999999985 88999999999998877664
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=262.61 Aligned_cols=260 Identities=18% Similarity=0.282 Sum_probs=230.6
Q ss_pred CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
.+++.+|.. |+.+-|+|+-...++++.|++|++||.. ++++.. ...+|.+.|.+++|+..|+++++++.|-.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~----tg~~e~---~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE----TGELER---SLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc----chhhhh---hhhccccceeEEEEecCccEEEecCCccc
Confidence 445778988 9999999999999999999999999998 777755 56789999999999999999999999988
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+.+||.++. .+++.. + .+|...|.++.|- |.++++++ |.+|+.|++.+|-++.++
T Consensus 174 ~~LWd~~~~--------------------~~c~ks-~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 174 AKLWDFDTF--------------------FRCIKS-L-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred hhheeHHHH--------------------HHHHHH-h-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 999976221 112221 1 3788899999998 99999999 999999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC---------------CCEEEEEe
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSG 605 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd---------------g~~l~s~s 605 (701)
.+|...+..++.+.|| .+|+++.|.++++|-..++++...+++|.-+|.+++|-|. ++++.++|
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999999999999 9999999999999999999999999999999999999663 25999999
Q ss_pred CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEE
Q 005342 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHI 680 (701)
Q Consensus 606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~ 680 (701)
.|++|++||+.+|. +...+. ||. +.|..++|+|.|+||++. +|+++++||++++++.++++. ++++
T Consensus 312 rDktIk~wdv~tg~--cL~tL~----ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGM--CLFTLV----GHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred ccceEEEEeccCCe--EEEEEe----ccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 99999999999985 444555 776 999999999999999996 899999999999999999988 8888
Q ss_pred EEE
Q 005342 681 MFV 683 (701)
Q Consensus 681 ~fs 683 (701)
.|.
T Consensus 383 Dfh 385 (406)
T KOG0295|consen 383 DFH 385 (406)
T ss_pred ecC
Confidence 885
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=242.58 Aligned_cols=255 Identities=16% Similarity=0.185 Sum_probs=217.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
.+|++|...+|.|..+++...+.|+ .+...|| .....||+||+.++...-.
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVN--rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv--------------------- 76 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVN--RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV--------------------- 76 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcccee--eEEEcCCcchhhhccCCeeEEEEccCCCCCce---------------------
Confidence 8999999999999999998888899 9999999 7778999999988764222
Q ss_pred CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~ 459 (701)
..+.+|.+ |.++.|.-||+.+++|+.||+++|||+. .-.|.+. + .+..+|.++..+|+...|++|
T Consensus 77 ------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR----~~~~qR~---~-~~~spVn~vvlhpnQteLis~ 142 (311)
T KOG0315|consen 77 ------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR----SLSCQRN---Y-QHNSPVNTVVLHPNQTELISG 142 (311)
T ss_pred ------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc----Ccccchh---c-cCCCCcceEEecCCcceEEee
Confidence 12457766 9999999999999999999999999998 3333331 1 267899999999999999999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
..+|.|++||+.. ..+... +.+.....|.++++. |++++.+. .|..++|++-+..
T Consensus 143 dqsg~irvWDl~~---------------------~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 143 DQSGNIRVWDLGE---------------------NSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred cCCCcEEEEEccC---------------------Cccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 9999999997743 222221 223456789999888 88998888 6999999986543
Q ss_pred ------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342 537 ------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 537 ------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
++.+++.|...+..+.+|||+ +||+++.|.+++||+.++. +....+.||...++.++||.||.||++|+.|+
T Consensus 201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 567788899999999999999 9999999999999999887 66778899999999999999999999999999
Q ss_pred eEEEEECCCCee
Q 005342 609 QLCVWDAVGWKK 620 (701)
Q Consensus 609 ~I~vwd~~~g~~ 620 (701)
++++|++..++.
T Consensus 281 ~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 281 TARLWDLSAGKE 292 (311)
T ss_pred ceeecccccCce
Confidence 999999999863
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=270.98 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=232.2
Q ss_pred eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
......|. .+.|.|+ +.-|.+.+|+..+-. -..|+..|+. |
T Consensus 93 NKvkc~V~--~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----------------------------FEtilQaHDs~V 141 (464)
T KOG0284|consen 93 NKVKCPVN--VVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----------------------------FETILQAHDSPV 141 (464)
T ss_pred ccccccee--eEEEcCCCceeEeecccccEEEecCceee-----------------------------HHHHhhhhcccc
Confidence 33444677 8999999 788999999873221 1235779999 9
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+++.|+++|.++++|+.+|.|++|+.+ ......+ ...|...|.+++|||+...+++++.||+|+|||....
T Consensus 142 r~m~ws~~g~wmiSgD~gG~iKyWqpn----mnnVk~~---~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-- 212 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGDKGGMIKYWQPN----MNNVKII---QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-- 212 (464)
T ss_pred eeEEEccCCCEEEEcCCCceEEecccc----hhhhHHh---hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--
Confidence 999999999999999999999999987 3333321 1235589999999999999999999999999986221
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
..+.+ + .+|.-.|.+++|+ ...+++++ |..|++||.+++.++.++.+|+..|..+.
T Consensus 213 -----------------kee~v---L-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 213 -----------------KEERV---L-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred -----------------chhhe---e-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 11111 2 5899999999999 77899999 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
|+|++ +|++++.|..++++|+++.+.+.++++|+..|++++|+| ...+|++|+.||.|..|.+... .++..+.
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-----~p~~~i~ 346 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-----EPLGEIP 346 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-----ccccCCC
Confidence 99999 999999999999999999999999999999999999999 6679999999999999999852 4454466
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
..|. ..|++++|+|-|..|++| .|.++++|.-
T Consensus 347 ~AHd---~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 PAHD---GEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccc---cceeeeeccccceeEeecCCCcceeeecc
Confidence 6776 999999999999999997 7999999975
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-30 Score=241.18 Aligned_cols=285 Identities=15% Similarity=0.188 Sum_probs=224.5
Q ss_pred ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
..++.+++|.+.++ .++|+|. +.|+.|++|++..+..... ..+ .-
T Consensus 5 ~~~~~~~gh~~r~W--~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-----------k~v--------------ld 57 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVW--SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-----------KTV--------------LD 57 (312)
T ss_pred eeEEeecCCCCcEE--EEEeccCCceEEEeecCCceEEEEecCCCCcEEE-----------EEe--------------cc
Confidence 45678899999999 9999998 8999999999985433221 000 01
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.+|+. |++++|+|.|++||+|+.|.++.||.-. .+....+. ...+|.+.|.|++|+++|.+|++|+.|++|-||
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~----~~efecv~-~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE----DGEFECVA-TLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecC----CCceeEEe-eeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 27888 9999999999999999999999999876 33333322 567899999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCcEEEE
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLAT 540 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~~~~~ 540 (701)
.... .++ +.. ...+|...|..+.|+ ...|++++ |++|++|.-. .-.++++
T Consensus 133 e~de--------------------ddEfec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 133 EIDE--------------------DDEFECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EecC--------------------CCcEEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 7732 222 332 225899999999999 68999999 9999999876 2358999
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
+.+|...|.+++|+|.| .++++++|++++||-..+. +.+ |+..+..++|. ...|+|++.|+.|+++.-..+
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 99999999999999999 9999999999999986532 222 78899999998 457999999999999987753
Q ss_pred eeeee-eeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEE-ecCeEEEEECC
Q 005342 619 KKLCS-KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 619 ~~~~~-~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg-~Dg~I~iwd~~ 666 (701)
-.... ..+......|. ..|++++|+|. ...|++| +||.|++|.+.
T Consensus 264 ~d~p~~~l~~~~~~aHe---~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHE---VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCchHHHHHhhhcccc---cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11010 11111223443 89999999995 5667774 89999999874
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-30 Score=258.64 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=246.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|.|++.++-+--.+++.|...|. |++|||| +.|+.+.+||-.+|+.+.. +.+.
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~--~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----------l~~~------ 231 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVN--CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----------LEDS------ 231 (603)
T ss_pred CeEEEeeCCCeeeeeccccccccee--eEEECCCCCeEEEecCCccEEEEcCCCccEEEE----------ecCC------
Confidence 7888888888888899999999999 9999999 9999999999999999888 4332
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC------CCc--------e------eEee----
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE------PSE--------C------RTLL---- 434 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~------~~~--------~------~~l~---- 434 (701)
.+|.+ |.+++|+||++.++|++.|.+++|||+.+..- ..+ + ..++
T Consensus 232 ----------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 232 ----------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred ----------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 37888 99999999999999999999999999974310 000 0 0000
Q ss_pred ------------cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc----cccccc--c-----------e-
Q 005342 435 ------------LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS----LEEENV--N-----------M- 484 (701)
Q Consensus 435 ------------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~----~g~~~~--~-----------~- 484 (701)
....+|...|+++..+||+++|++|+.||.|.-|+..++... .++... . +
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 011289999999999999999999999999999998776541 111100 0 0
Q ss_pred ---eeEEeeC-----------------------CCC-e---------EEeecc----cCCCCCCeEEEEec--CCEEEEE
Q 005342 485 ---ESQLYQP-----------------------SSK-L---------VMTNDI----AADPKDSISCFALR--GSHLFSA 522 (701)
Q Consensus 485 ---~i~~~d~-----------------------~~~-~---------~~~~~~----~~~~~~~v~~l~~s--~~~l~s~ 522 (701)
.+++.+. ..+ . .+-+.. .........+++++ ++.+++|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 0111111 000 0 000000 00123455678888 8899999
Q ss_pred e-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecC
Q 005342 523 S-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLS 597 (701)
Q Consensus 523 s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spd 597 (701)
+ |+.+++|.+..+.. ......|..+|+++++|||+ +||+|...+.+.+||+.+++... .+.-|+..|++++|+|+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 9 99999999976542 33445689999999999999 99999999999999999887643 33349999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
..++||||-|..|.||+++... +.+. +...|. ..|+.+.|-.+...+-+|.|..|++|++.
T Consensus 542 n~~vATGSlDt~Viiysv~kP~----~~i~-iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 542 NKLVATGSLDTNVIIYSVKKPA----KHII-IKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceEEEeccccceEEEEEccChh----hheE-eccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999999999999842 2244 556676 66999999877666666899999999873
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-31 Score=248.09 Aligned_cols=278 Identities=15% Similarity=0.174 Sum_probs=228.3
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.+.+|++ |..+.|+|+|..||||+.|..|.+|++. +.|.... ...+|.+.|..+.|.+|++.+++++.|.+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-----gdceN~~-~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-----GDCENFW-VLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecc-----cccccee-eeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 3679999 9999999999999999999999999985 3333322 2347999999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.||. ++|+...+ + ++|..-|.++..+ |. ++.+++ |+++++||+++...++++.
T Consensus 116 ~wD~---------------------~tG~~~rk-~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 116 GWDA---------------------ETGKRIRK-H-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred EEec---------------------ccceeeeh-h-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9954 66776653 2 5788889888877 55 455666 8999999999998888886
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
.+.+++++.|..++ .+.+|+-|+.|++||++.+....+++||..+|+.+..+|+|.++.+-+.|+++++||++....-
T Consensus 173 -~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 173 -NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred -cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 56789999999999 9999999999999999999999999999999999999999999999999999999999875322
Q ss_pred eeeeeeeccCCCC-CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee---EEeeeec
Q 005342 622 CSKFLHSFQTGLV-PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI---VVKFHSF 692 (701)
Q Consensus 622 ~~~~l~~~~~~~~-~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~---~~~f~~~ 692 (701)
. ..+. +..||. .-+.....++|+|+++.+.+| .|..+++||..+...+..++| |+.+.|.|. ..+--+=
T Consensus 252 ~-R~v~-if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 252 Q-RCVK-IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred C-ceEE-EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 1 2233 322432 111334678999999999986 899999999988899999999 999999765 3333444
Q ss_pred ceEEE
Q 005342 693 KFFYV 697 (701)
Q Consensus 693 ~~~~~ 697 (701)
|.+|.
T Consensus 330 k~i~l 334 (338)
T KOG0265|consen 330 KTIYL 334 (338)
T ss_pred ceeEe
Confidence 45554
No 27
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=260.66 Aligned_cols=413 Identities=17% Similarity=0.211 Sum_probs=282.9
Q ss_pred chhhhhhHhhhccchhhhhhhhhhccCccccc----ccccccccccccccccccccccccccccccccchhhccccccee
Q 005342 196 EELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKY 271 (701)
Q Consensus 196 ~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~----~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~ 271 (701)
.+++||+.|+|++...+.+...|++|++++.+ +.-|.+.|-.|.|+...+.+..++..+.. +..+.+|..
T Consensus 8 sdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kk------L~dLYEqiv 81 (508)
T KOG0275|consen 8 SDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKK------LIDLYEQIV 81 (508)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhH------HHHHHHHHH
Confidence 47899999999999999999999999999944 77888999999999988777655432221 112233333
Q ss_pred eeeeccc------------------------------ccccccccc-cccccccch--hhhhhcccccCcccccccCccc
Q 005342 272 LEAVDRQ------------------------------QKLPSDFAE-RAHLFDDFK--VLVERNPMLQDKLKFPSMDKSR 318 (701)
Q Consensus 272 ~~~~~~~------------------------------~~~~~~~~d-r~~~~~~~~--~l~~~~~~la~~i~iwd~~~~~ 318 (701)
+|+.+-+ ..+-.++-| +-...+..+ .-....+.|++.|.+ +++.+
T Consensus 82 lEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~V--VppSR 159 (508)
T KOG0275|consen 82 LELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHV--VPPSR 159 (508)
T ss_pred HHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEE--cChHH
Confidence 3332111 000011111 111122111 011111222222222 12222
Q ss_pred eeEEE------eecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 319 LLSLI------KQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 319 ~~~~l------~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
++..+ ++|.+... .|+-. |+-.|+.-..- ..-+.++... ....-.+.
T Consensus 160 LlaLlGQaLKWQqHQGLLP-----------PGt~i--DLFRGkAA~K~-------~~Ee~~Pt~l-------~r~IKFg~ 212 (508)
T KOG0275|consen 160 LLALLGQALKWQQHQGLLP-----------PGTTI--DLFRGKAAMKD-------QEEERYPTQL-------ARSIKFGQ 212 (508)
T ss_pred HHHHHHHHhhhHhhcCCCC-----------CCcee--eeccchhhhhh-------hHhhhchHHh-------hhheeccc
Confidence 22211 22333222 22222 33222221110 0000000000 01111244
Q ss_pred Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-ee----cCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LL----LPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~----~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.. +.|..|||||++|++|+.||.|.+|+.. +|+.++ +. -.+-.+...|.|+.||.|...+++|+.||.|+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~----~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYT----TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhc----cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 45 8899999999999999999999999997 555432 00 01113678999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
+|.+ .+|.++.+ +...|...|+|+.|| +..+++++ |.++++--+++|++++.+.|
T Consensus 289 vWri---------------------~tG~ClRr-FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG 346 (508)
T KOG0275|consen 289 VWRI---------------------ETGQCLRR-FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG 346 (508)
T ss_pred EEEE---------------------ecchHHHH-hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC
Confidence 9955 66776644 556899999999999 88899999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCe
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
|.+.|+...|++|| .+++++.||+|++|+.++.+++.+|+. ..-+|+++..-| +...++.|...++|+|-++...
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ- 425 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ- 425 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-
Confidence 99999999999999 999999999999999999999998875 445889988888 4558888999999999999872
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.++++..|.. ..+...+...||.|.++++ |.|+.++-+.+.+|++.++++.
T Consensus 426 -----vVrsfsSGkR-EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 426 -----VVRSFSSGKR-EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred -----EEeeeccCCc-cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence 3333444443 1256677889999999998 7999999999999999988876
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=6.1e-31 Score=252.75 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=243.3
Q ss_pred ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 388 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~ 388 (701)
+.++-+.+++|.++|. |+++-|. +.|++++|||+.+|+...+ +
T Consensus 140 pwKl~rVi~gHlgWVr--~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt----------l------------------ 189 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVR--SVAVDPGNEWFATGSADRTIKIWDLATGQLKLT----------L------------------ 189 (460)
T ss_pred cceehhhhhhccceEE--EEeeCCCceeEEecCCCceeEEEEcccCeEEEe----------e------------------
Confidence 4567788999999999 9999997 9999999999999988776 2
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
.||.. |..+++|+...|+++++.|+.|+.||++ ..+..+ ...+|-..|.|++..|.-+.|++|+.|.+++|
T Consensus 190 -tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe----~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~Rv 261 (460)
T KOG0285|consen 190 -TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE----YNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRV 261 (460)
T ss_pred -cchhheeeeeeecccCceEEEecCCCeeEEEech----hhhhHH---HhccccceeEEEeccccceeEEecCCcceEEE
Confidence 36667 8999999999999999999999999998 444433 45579999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
||+++ ...+.. + .+|..+|.++.+. +..+++|+ |++|++||+..|+...++..|
T Consensus 262 WDiRt---------------------r~~V~~-l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 262 WDIRT---------------------RASVHV-L-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred eeecc---------------------cceEEE-e-cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 97743 332221 2 5899999999998 88899999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
...+.+++.+|.. .+|+++.| .|+-|++..|..++.+.+|+.-|++++.+.|| ++++|++.|.+..||.++|.....
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 9999999999999 88888877 69999999999999999999999999998876 678899999999999999854321
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
..-. +..|....+..|.+.+|...|..|+++ .|.+|++|.-.
T Consensus 397 ~~t~-vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 397 GQTI-VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccc-ccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 1101 222322234678999999999999997 89999999753
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=6.4e-32 Score=258.28 Aligned_cols=273 Identities=16% Similarity=0.203 Sum_probs=223.1
Q ss_pred cCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342 326 IMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST 399 (701)
Q Consensus 326 h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~ 399 (701)
....|. |+.|-.+ ..|+||+|||..+-.|++. |.||++ |-|+.
T Consensus 196 ~skgVY--ClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-----------------------------L~GHtGSVLCLq 244 (499)
T KOG0281|consen 196 NSKGVY--CLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-----------------------------LTGHTGSVLCLQ 244 (499)
T ss_pred cCCceE--EEEecchhhhcccccCceEEeccccHHHHHh-----------------------------hhcCCCcEEeee
Confidence 355688 9999877 7999999999998888877 247777 88888
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 479 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~ 479 (701)
|. .+.+++|+.|.+|++||++ ++++.. ..-+|...|..+.|+ ..++++++.|.++.+||+..
T Consensus 245 yd--~rviisGSSDsTvrvWDv~----tge~l~---tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s------- 306 (499)
T KOG0281|consen 245 YD--ERVIVSGSSDSTVRVWDVN----TGEPLN---TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS------- 306 (499)
T ss_pred cc--ceEEEecCCCceEEEEecc----CCchhh---HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC-------
Confidence 85 4599999999999999999 777666 334689999999998 44899999999999998832
Q ss_pred cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342 480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 557 (701)
Q Consensus 480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg- 557 (701)
.+.......+ .+|...|..+.|+.+++++++ |.+|++|++.+++.++++.+|...|-|+.+. |
T Consensus 307 ------------ps~it~rrVL-vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r 371 (499)
T KOG0281|consen 307 ------------PTDITLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR 371 (499)
T ss_pred ------------chHHHHHHHH-hhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence 2222111112 489999999999988999999 9999999999999999999999999888764 5
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee----eeeeeeccCCC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQTGL 633 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~----~~~l~~~~~~~ 633 (701)
++++|+.|.+|++||+..|.+++.++||+.-|.++.| |.+.+++|+.||+|+|||+..+..-. ..++.++ ..|
T Consensus 372 lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~h 448 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEH 448 (499)
T ss_pred EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhh-hhc
Confidence 9999999999999999999999999999999999999 56789999999999999999864210 0122211 234
Q ss_pred CCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCce
Q 005342 634 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 670 (701)
Q Consensus 634 ~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~ 670 (701)
+ +.|..+.|. ...+++ ++|.+|-|||..++-.
T Consensus 449 s---gRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 449 S---GRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred c---ceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 4 789999985 345555 5899999999987754
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=269.77 Aligned_cols=303 Identities=17% Similarity=0.208 Sum_probs=250.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
..+.++|.++.+....+-|..+.|. .++|-.. ++-+.+|++++.+..|.-
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~--Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i-------------------- 360 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEIL--DMKFLGPEESHLAVATNSPELRLYTLPTSYCQI-------------------- 360 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhhe--eeeecCCccceEEEEeCCCceEEEecCCCceEE--------------------
Confidence 8888999999999999999999999 8888653 778889999877666552
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEE
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFL 456 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l 456 (701)
+.||+. |.++....+|-+|+||+.|+++++|.+++.-....+.. ...+|.+.|.+++++..+ .+|
T Consensus 361 ----------i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a---~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 361 ----------IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA---QANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred ----------EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh---hhcccccccceeeecccCccEE
Confidence 358888 99999777889999999999999999952211111122 335799999999998766 488
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~ 533 (701)
+++|.|+++++|++...+. .+ ....+........|...|+|++++ +..+++|+ |.+.++|+++
T Consensus 428 vsvS~D~tlK~W~l~~s~~-----~~---------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKE-----TA---------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred EEecCCceEEEecCCCccc-----cc---------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 9999999999998844211 00 000010011123699999999999 78899999 9999999999
Q ss_pred CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
......++.||...+.++.|+|.. .+|++|.|++|+||.+.++.++++|.||+..|..+.|-.+|..|+|++.||-|++
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
|++++++ |...+. .|. ..|++++-+|.+.++++| .||.|.+|.=.|
T Consensus 574 Wnikt~e--C~~tlD----~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 574 WNIKTNE--CEMTLD----AHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred Eeccchh--hhhhhh----hcc---ceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999965 333433 555 999999999999999996 899999996433
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=233.22 Aligned_cols=255 Identities=15% Similarity=0.202 Sum_probs=209.9
Q ss_pred ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
+.+|.+ ++.++|+|- |..||+|+.|+.|++|+... ..+-.|+. ....+|...|.+++|+|.|++|+++|.|.++.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~--vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKT--VLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEE--eccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 568899 999999999 99999999999999999973 11222332 22347999999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC---cEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTL 538 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~---~~~ 538 (701)
||.- ..+. ++.. + .+|...|.|++|+ |++||+++ |+.|.+|.+..+ .+.
T Consensus 87 Iw~k---------------------~~~efecv~~-l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 87 IWKK---------------------EDGEFECVAT-L-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred Eeec---------------------CCCceeEEee-e-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 9943 2222 3332 3 6999999999999 99999999 999999998743 477
Q ss_pred EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 539 ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
..+++|.+.|-.+.|+|.. +|++++.|.+|++|+-. .-.+++++.+|.+.|.+++|+|.|..|+++++|++++||.
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 8899999999999999988 99999999999999865 2467899999999999999999999999999999999998
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC------ceeeeeee-----eeEEEE
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQVLL-----ISHIMF 682 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g------~~~~~l~~-----i~~~~f 682 (701)
..++ +..-|. ..++.+.|. .-.|++ |.|+.|+++.-..+ +++....+ |+++.|
T Consensus 224 ~~~~----------~~~~~s---r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 224 LYTD----------LSGMHS---RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eccC----------cchhcc---cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 7653 333444 789999998 456777 48999999987643 11111112 999999
Q ss_pred Ee
Q 005342 683 VQ 684 (701)
Q Consensus 683 s~ 684 (701)
.|
T Consensus 289 ~p 290 (312)
T KOG0645|consen 289 NP 290 (312)
T ss_pred cC
Confidence 98
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-29 Score=250.25 Aligned_cols=266 Identities=10% Similarity=0.083 Sum_probs=224.7
Q ss_pred cceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342 328 DWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST 399 (701)
Q Consensus 328 ~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~ 399 (701)
..|+ +++|+.+ +.||.+++|+...+. +.+ |..|.+ |.++.
T Consensus 236 kdVT--~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~t-----------------------------l~~HkgPI~slK 283 (524)
T KOG0273|consen 236 KDVT--SLDWNNDGTLLATGSEDGEARIWNKDGNL-IST-----------------------------LGQHKGPIFSLK 283 (524)
T ss_pred CCcc--eEEecCCCCeEEEeecCcEEEEEecCchh-hhh-----------------------------hhccCCceEEEE
Confidence 4578 9999987 899999999975432 222 357888 99999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 479 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~ 479 (701)
|+.+|+||++++.|+++.+||.. ++.+.+ .+..|..+...+.|-.+.. +++++.||.|+|+.+...
T Consensus 284 Wnk~G~yilS~~vD~ttilwd~~----~g~~~q---~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~------ 349 (524)
T KOG0273|consen 284 WNKKGTYILSGGVDGTTILWDAH----TGTVKQ---QFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGED------ 349 (524)
T ss_pred EcCCCCEEEeccCCccEEEEecc----CceEEE---eeeeccCCccceEEecCce-EeecCCCceEEEEEecCC------
Confidence 99999999999999999999997 666555 2233666667888876665 799999999999976321
Q ss_pred cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC
Q 005342 480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 556 (701)
Q Consensus 480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd 556 (701)
..+.+ + .+|.++|.++.|+ |..|++++ |+++++|+.......+.+.+|...|..+.|+|+
T Consensus 350 ---------------~P~~t-~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 350 ---------------RPVKT-F-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred ---------------Cccee-e-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 11111 2 3699999999999 99999999 899999999988899999999999999999986
Q ss_pred C----------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 557 D----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 557 g----------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
| .+++++.|++|++||+..+.++++|..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++... ..
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~--s~ 490 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK--SY 490 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE--ee
Confidence 4 68999999999999999999999999999999999999999999999999999999999986432 22
Q ss_pred eeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
. +. +.|..++|+.+|..|.++ .|+.+++-|++
T Consensus 491 ~----~~----~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 Q----GT----GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred c----CC----CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 2 32 779999999999999886 89999999874
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=229.96 Aligned_cols=279 Identities=13% Similarity=0.121 Sum_probs=231.0
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+.++.+.+|.+.|. .+.|+-| +.|++|++||...|.++++ . .
T Consensus 8 kr~~~l~~~qgaV~--avryN~dGnY~ltcGsdrtvrLWNp~rg~likt----------Y-------------------s 56 (307)
T KOG0316|consen 8 KRLSILDCAQGAVR--AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT----------Y-------------------S 56 (307)
T ss_pred hhceeecccccceE--EEEEccCCCEEEEcCCCceEEeecccccceeee----------e-------------------c
Confidence 34567889999999 9999998 9999999999999999888 2 3
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
+|.. |..++.+.|...+++|+.|..+.+||++ +|+..+ .+.+|...|..+.|+.+...+++|+.|.++++||
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~----TGkv~R---r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN----TGKVDR---RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcc----cCeeee---ecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence 6677 8899999999999999999999999999 787665 5678999999999999999999999999999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
.++. +-+.++ +.......|.++.+.+..|++|+ ||+++.||++.|....-+- ..+|
T Consensus 130 CRS~-------------------s~ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pi 186 (307)
T KOG0316|consen 130 CRSR-------------------SFEPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPI 186 (307)
T ss_pred cccC-------------------CCCccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcc
Confidence 7543 222222 11345678889988888899999 9999999999998877665 4589
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe--EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V--~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
++++|++|| ..++++.|+++++.|-.+|++++.++||...- ..++++.....+++||+||.|++||+..+..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s--- 263 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS--- 263 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee---
Confidence 999999999 99999999999999999999999999998743 344677777799999999999999999865332
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
.+..+.. -.|.+++++|.-.-+++..++.+..|--
T Consensus 264 --k~~~~~~---v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 264 --KLSVVST---VIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred --eeccCCc---eeEEeeecccCccceeEecCCceeceee
Confidence 1222221 3489999999987777776666677753
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-28 Score=251.94 Aligned_cols=274 Identities=22% Similarity=0.321 Sum_probs=228.8
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
..+++|.+.|. +++|+|+ +.|+.+++|++.++..... +.+|.
T Consensus 3 ~~~~~h~~~i~--~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-----------------------------~~~~~ 51 (289)
T cd00200 3 RTLKGHTGGVT--CVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-----------------------------LKGHT 51 (289)
T ss_pred hHhcccCCCEE--EEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------EecCC
Confidence 45678999999 9999997 6699999999988764443 13555
Q ss_pred c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
. +..+.|+|+++.+++++.|+.+++|++. .++... ....|...+.++.|+|+++.+++++.||.+.+||+
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~-- 122 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLE----TGECVR---TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV-- 122 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcC----cccceE---EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC--
Confidence 6 8899999999999999999999999997 322222 12246778999999999888888887999999966
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
.+++.... + ..|...+.+++++ +.++++++ ++.|++||+++++.+..+..|...+.
T Consensus 123 -------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 123 -------------------ETGKCLTT-L-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred -------------------CCcEEEEE-e-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc
Confidence 33443322 2 3577889999999 77888888 99999999998988888888888999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
+++|+|++ .+++++.|+.|++||+++++.+..+.+|...+.+++|+|++.++++++.|+.|++||+.+++.. ..
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-----~~ 256 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV-----QT 256 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE-----EE
Confidence 99999999 9999999999999999999999999889999999999999999998888999999999986422 21
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
+. +|. ..+.+++|+|++++++++ .|+.+++|+
T Consensus 257 ~~-~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LS-GHT---NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cc-ccC---CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 22 444 789999999999999985 899999996
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6e-31 Score=257.15 Aligned_cols=253 Identities=17% Similarity=0.198 Sum_probs=214.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|..+.|.|+|+.|++|+..|.+.+|+... ..+..-...|...|.++.|+++|.++++|+.+|.|++|+.
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp---- 167 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP---- 167 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc----
Confidence 88999999999999999999999999741 1212223469999999999999999999999999999954
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.-+.+.. +...|...|++++|+ +..+++++ ||+|+|||....+....+.+|.-.|.++
T Consensus 168 -----------------nmnnVk~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 168 -----------------NMNNVKI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred -----------------chhhhHH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 2222221 324566899999999 88899999 8999999999998888999999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
.|+|.- +|++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|+|+|.|..++++|+++.+ .+....
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----El~~~r 303 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----ELFTYR 303 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----HHHHhh
Confidence 999999 99999999999999999999999999999999999999999999999999999999999632 233122
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeE
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIV 686 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~ 686 (701)
+|. ..|+++.|+|-..-|+ +| .||.|..|.+...+.+..++. |.+++|.|..
T Consensus 304 -~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 304 -GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred -cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 565 8999999999765544 44 899999999986777776665 8899987753
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-28 Score=286.04 Aligned_cols=305 Identities=14% Similarity=0.164 Sum_probs=232.9
Q ss_pred ccccCcccccccCccceeEEE-----eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCC
Q 005342 303 PMLQDKLKFPSMDKSRLLSLI-----KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQ 370 (701)
Q Consensus 303 ~~la~~i~iwd~~~~~~~~~l-----~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~ 370 (701)
+++.+-+++|+..+-+....+ ..|.+.|. +++|+|+ +.|++|+|||..+......
T Consensus 454 ~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------- 520 (793)
T PLN00181 454 PFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVC--AIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------- 520 (793)
T ss_pred hhhhhhhhhhcccceEEEEeeccccccCCCCcEE--EEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------
Confidence 345577888888766655443 34888999 9999998 8899999999764211000
Q ss_pred CCCCcccccCCCCCCCccccCCCceEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE
Q 005342 371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 449 (701)
Q Consensus 371 ~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~ 449 (701)
..+. +...+.++..|.+++|+| ++.+|++++.||+|++||+. +++... ...+|.+.|++++|
T Consensus 521 ~~~~----------~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~----~~~~~~---~~~~H~~~V~~l~~ 583 (793)
T PLN00181 521 DIHY----------PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA----RSQLVT---EMKEHEKRVWSIDY 583 (793)
T ss_pred cccc----------ceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC----CCeEEE---EecCCCCCEEEEEE
Confidence 0000 011123343489999987 47899999999999999997 454433 33568999999999
Q ss_pred ec-CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-C
Q 005342 450 SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-G 524 (701)
Q Consensus 450 sp-dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-d 524 (701)
+| ++.+|++|+.||.|++||+ .++..+.. +. +...+.++.|+ |.++++|+ |
T Consensus 584 ~p~~~~~L~Sgs~Dg~v~iWd~---------------------~~~~~~~~-~~--~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 584 SSADPTLLASGSDDGSVKLWSI---------------------NQGVSIGT-IK--TKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred cCCCCCEEEEEcCCCEEEEEEC---------------------CCCcEEEE-Ee--cCCCeEEEEEeCCCCCEEEEEeCC
Confidence 97 7899999999999999976 33333322 21 23578899985 88999999 9
Q ss_pred CeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC------CceEEeecCCCCCeEEEEEec
Q 005342 525 GKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 525 g~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~v~~sp 596 (701)
|.|++||+++++ .+..+.+|...|.++.|. ++ .+++++.|++|++||++. ...+..+.+|...++.++|+|
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence 999999998765 567788899999999997 56 999999999999999974 356788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec-------cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-------QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~-------~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
++++|++|+.|++|++|+...+.+......... ..++ ...|.+++|+|++..|++| .||.|+||++
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA---SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC---CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999876543322211100 0122 2679999999999999996 8999999996
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-29 Score=267.19 Aligned_cols=281 Identities=14% Similarity=0.223 Sum_probs=234.1
Q ss_pred eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
+.-+..|. .++|+|. =..|.|.+||..-+.++.. | .+|++ |
T Consensus 6 EskSsRvK--glsFHP~rPwILtslHsG~IQlWDYRM~tli~r----------F-------------------deHdGpV 54 (1202)
T KOG0292|consen 6 ESKSSRVK--GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR----------F-------------------DEHDGPV 54 (1202)
T ss_pred hccccccc--ceecCCCCCEEEEeecCceeeeehhhhhhHHhh----------h-------------------hccCCcc
Confidence 33445566 8888888 4678999999998888777 2 46778 9
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+.++|||++.++++|+.|-.|++|+.. ..+|.- +..+|-+.|..+.|++.-.+|+++|.|.+|+|||+
T Consensus 55 Rgv~FH~~qplFVSGGDDykIkVWnYk----~rrclf---tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw----- 122 (1202)
T KOG0292|consen 55 RGVDFHPTQPLFVSGGDDYKIKVWNYK----TRRCLF---TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW----- 122 (1202)
T ss_pred ceeeecCCCCeEEecCCccEEEEEecc----cceehh---hhccccceeEEeeccCCCceEEEccCCCeEEEEec-----
Confidence 999999999999999999999999997 555544 66789999999999999999999999999999987
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----------------
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---------------- 536 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---------------- 536 (701)
.++.++.. .++|...|.|.+|. ...+++++ |.+|++||+..-+
T Consensus 123 ----------------qsr~~iav--ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 123 ----------------QSRKCIAV--LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred ----------------cCCceEEE--EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 45555542 26999999999999 88999999 9999999985211
Q ss_pred -------------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCCCE
Q 005342 537 -------------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNV 600 (701)
Q Consensus 537 -------------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg~~ 600 (701)
..+.+.||...|+-++|+|.- .|++|++|..|++|.+...+. +.+.+||.+.|.++-|+|..++
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 113456899999999999999 999999999999999876553 5678899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
++|.|+|++|+|||+.... .++++...+ ...+.++-+|..+++++|+|+.+.||.++.-++...+
T Consensus 265 IlSnsEDksirVwDm~kRt-----~v~tfrren----dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRT-----SVQTFRREN----DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred eEecCCCccEEEEeccccc-----ceeeeeccC----CeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence 9999999999999999843 333233333 7789999999999999999999999988755544333
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=269.22 Aligned_cols=280 Identities=18% Similarity=0.241 Sum_probs=232.4
Q ss_pred eEEEeec-CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342 320 LSLIKQI-MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (701)
Q Consensus 320 ~~~l~~h-~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~ 391 (701)
...+..| ...|. |+.|+|+ +.|+.+++|+..++.. .. ...+.+
T Consensus 151 ~~~~~~~~~~sv~--~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~--------------------------~~~l~~ 201 (456)
T KOG0266|consen 151 EQTLAGHECPSVT--CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NL--------------------------LRELSG 201 (456)
T ss_pred eeeecccccCceE--EEEEcCCCCeEEEccCCCcEEEeecccccc-hh--------------------------hccccc
Confidence 3444444 66788 9999999 7999999999977663 11 112357
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|.. |..++|+|+|+++++|+.|+++++||+.. .+.+.+ .+.+|...|++++|+|+|+.+++|+.|++|++||+
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---~~~~~~---~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---DGRNLK---TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeeccC---CCeEEE---EecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 888 99999999999999999999999999942 445555 44589999999999999999999999999999955
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEecCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPP 545 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~~~~~ 545 (701)
.++++... + .+|...|++++|+ |+++++++ |+.|++||+.++. +...+.++.
T Consensus 276 ---------------------~~~~~~~~-l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 332 (456)
T KOG0266|consen 276 ---------------------RTGECVRK-L-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE 332 (456)
T ss_pred ---------------------cCCeEEEe-e-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence 55666543 3 5899999999999 99999999 9999999999998 567776665
Q ss_pred CC--eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC---eEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 546 PI--ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR---ITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 546 ~~--i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~---V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
.. ++++.|+|++ ++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++|+.|+.|++||..++.
T Consensus 333 ~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 333 NSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 44 8999999999 9999999999999999999999999998874 4445567789999999999999999999864
Q ss_pred eeeeeeeeeccCCC-CCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECC
Q 005342 620 KLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAP 666 (701)
Q Consensus 620 ~~~~~~l~~~~~~~-~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~ 666 (701)
..+ . + .+| . ..+..+.++|..++++++ .|+.+++|...
T Consensus 413 ~~~--~---l-~~h~~---~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 413 ILQ--R---L-EGHSK---AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhh--h---h-cCCCC---CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 222 2 2 255 4 889999999999999984 59999999764
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.4e-29 Score=233.93 Aligned_cols=275 Identities=16% Similarity=0.217 Sum_probs=224.5
Q ss_pred eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
+..+.+|.+.|. .+.|+|+ +.|..|.+|++..... .. -.+++|
T Consensus 40 ~m~l~gh~geI~--~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~---------------------------~~lkgH 89 (338)
T KOG0265|consen 40 IMLLPGHKGEIY--TIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NF---------------------------WVLKGH 89 (338)
T ss_pred hhhcCCCcceEE--EEEECCCCCeEeecCCcceEEEEecccccc-ce---------------------------eeeccc
Confidence 445789999999 9999999 8999999999753221 11 125689
Q ss_pred Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEEEEec
Q 005342 393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHKLWKW 470 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~ 470 (701)
.+ |..+.|.+|+..+++++.|++++.||.+ +|++.. ...+|..-|.++.-+.-|.. +.+++.||++++||+
T Consensus 90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~----tG~~~r---k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~ 162 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAE----TGKRIR---KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI 162 (338)
T ss_pred cceeEeeeeccCCCEEEEecCCceEEEEecc----cceeee---hhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence 99 9999999999999999999999999998 776655 55678888988885555554 456667999999977
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
+. ...+.. + ..+..++++.|. +..+.+|+ |+.|++||++.+...+.+.||..+
T Consensus 163 R~---------------------k~~~~t-~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 163 RK---------------------KEAIKT-F--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cc---------------------cchhhc-c--ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 43 332221 1 245689999999 88899999 999999999999999999999999
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CceEEeecCCCC----CeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 548 ATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~----~~~~~~l~~h~~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
|+.+..+|+| ++.+.+.|.++++||++- ..++..+.||.. ....++|+|++..+.+|+.|..+++||..+.
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 9999999999 999999999999999985 345777887543 3456799999999999999999999999884
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
. .+..++ ||. +.|++++|+|...++.++ .|.+|++=+
T Consensus 299 ~-----~lyklp-Gh~---gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 299 R-----ILYKLP-GHY---GSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred c-----EEEEcC-Ccc---eeEEEeeecCCCcEEEEeccCceeEeec
Confidence 3 233244 665 999999999999999985 899987643
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=242.12 Aligned_cols=261 Identities=15% Similarity=0.163 Sum_probs=226.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.+ |.++++.|-.++|++|+.|++++|||+. +++... +..+|-..|..+++|+-..|+++++.|+.|+-
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla----tg~Lkl---tltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA----TGQLKL---TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcc----cCeEEE---eecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 789999 9999999999999999999999999998 776544 56789999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
||+ +.++++.. + .+|-+.|.|++.. -+.|++|+ |.++++||+++...+..+.||
T Consensus 220 wDL---------------------e~nkvIR~-Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 220 WDL---------------------EYNKVIRH-Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred Eec---------------------hhhhhHHH-h-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence 965 55555532 2 4899999999999 78899999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
..+|.++.+.|-. .+++||.|++|++||++.|+...++..|+..|.+++.+|....+||+|.| .|+-|++..|+...
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~- 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ- 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhh-
Confidence 9999999999988 99999999999999999999999999999999999999999999999987 69999999985322
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee-----e-------eeEEEEEeeEEee
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL-----L-------ISHIMFVQIVVKF 689 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~-----~-------i~~~~fs~~~~~f 689 (701)
.+. +|. ..|++++.+.||-++.-|+.|.+..||.++|-..+... | |...+|.....+.
T Consensus 355 -nls----gh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 355 -NLS----GHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred -ccc----ccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 122 665 88999999999866655689999999999987666552 2 7778886554443
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.2e-28 Score=235.30 Aligned_cols=299 Identities=14% Similarity=0.144 Sum_probs=243.2
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
..+.++..|++.|. +++.+|+ +.|....||+..+|..... +.
T Consensus 55 dS~~tF~~H~~svF--avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-----------------------------lt 103 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVF--AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-----------------------------LT 103 (399)
T ss_pred cceeehhhcCCceE--EEEeCCCCceEEecCCCceEEEEEccCCcceeE-----------------------------ec
Confidence 45678899999999 9999998 8899999999999985554 24
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
+|+. |.++.|+.||.+||||+.+|.|.||+.. ++.... . .....+.+.-+.|+|-+..|++|+.||.+.+|.
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s----tg~~~~-~--~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS----TGGEQW-K--LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcc----cCceEE-E--eecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 7888 9999999999999999999999999998 443222 1 112457888999999999999999999999999
Q ss_pred cCCCCc-----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC
Q 005342 470 WQSNKQ-----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG 525 (701)
Q Consensus 470 ~~~~~~-----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg 525 (701)
+..... ++|+.+.. ..+++|++.+++.+.+ +........+++.++ +..++.|+ ++
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~-~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK-ITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE-ecccccCcCCccccccccceeEeccCCc
Confidence 877332 44555442 3499999999996644 222334567788888 88888888 89
Q ss_pred eEEEEeCCCCcEEEEec--------CCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342 526 KISIFSLETFQTLATFA--------NPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~--------~~~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~ 593 (701)
.+++.+..+|+.+.... .+...+.++.+.|.. +.|+|+-||+|.|||+...++.+.+. |..+|+.+.
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~ 334 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLK 334 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEE
Confidence 99999999998887766 334455667666655 88999999999999998887766665 899999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECC
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 666 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~ 666 (701)
|-+ ..+|++++.+|.|+.||.++|... ..+. ||. ..|.+++.+|+++++++ |.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~--~~y~----GH~---~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLK--FTYT----GHQ---MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceE--EEEe----cCc---hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 998 789999999999999999999643 3344 887 99999999999999999 589999999874
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=264.85 Aligned_cols=260 Identities=17% Similarity=0.183 Sum_probs=214.2
Q ss_pred Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
.. |.++.|+|+|+.+++++.|+.+++|+...... .... ...+|...|.+++|+|||+++++++.|+++++||+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~---~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLR---ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhc---cccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 44 99999999999999999999999999963221 0111 235799999999999999999999999999999651
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
..+..+.. + .+|...|++++|+ |+.+++|+ |++|++||+++++++..+.+|.+.|
T Consensus 234 --------------------~~~~~~~~-l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 234 --------------------DDGRNLKT-L-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred --------------------CCCeEEEE-e-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 33344432 4 4899999999999 98999999 9999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCC--eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~--V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
++++|++++ ++++++.|+.|++||+.++. +...+.++... ++++.|+|++.++++++.|+.+++||+..+...
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-- 369 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-- 369 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce--
Confidence 999999999 99999999999999999998 56788877665 999999999999999999999999999987522
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI 685 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~ 685 (701)
.... +|......+.+...++.++++++| .|+.|++||+.++..+..+.+ +..++++|.
T Consensus 370 ~~~~----~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 370 GTYT----GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred eeec----ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 2222 333100244555668899999997 899999999999888877776 455555443
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.1e-28 Score=252.22 Aligned_cols=339 Identities=14% Similarity=0.190 Sum_probs=267.2
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
|.|++|+..+...+-++.+|...|+ ++.|... |.|+.|.+||+-....+..
T Consensus 87 GsVqif~~~s~~~~~tfngHK~AVt--~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-------------------- 144 (888)
T KOG0306|consen 87 GSVQIFSLESEEILITFNGHKAAVT--TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-------------------- 144 (888)
T ss_pred ceEEeeccCCCceeeeecccccceE--EEEEcccCceEeecCCCccEEEEEeccceeeEE--------------------
Confidence 9999999999999999999999999 9999988 8999999999977666555
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
|+||.. |+..-|..+.+++++++.|+.+++||+. +..|.... -.|.+.++++++.+ +.+++
T Consensus 145 ---------L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~----tqhCf~Th---vd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 145 ---------LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE----TQHCFETH---VDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred ---------eecchHHHhHHhccCCCeEEEEeccCceEEEEecc----cceeeeEE---ecccceEEEEEEec--ceEEE
Confidence 356777 7778888888999999999999999998 78887733 36899999999997 78999
Q ss_pred EECCCcEEEEecCCCCc-------------------ccccccc-------------------------------------
Q 005342 459 LTQTATHKLWKWQSNKQ-------------------SLEEENV------------------------------------- 482 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~-------------------~~g~~~~------------------------------------- 482 (701)
++.|+.+++|++..+.. ..|+.+.
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 99999999999822111 0000000
Q ss_pred ---------------cee-----------------------------------------eEEeeCCC-CeE------Eee
Q 005342 483 ---------------NME-----------------------------------------SQLYQPSS-KLV------MTN 499 (701)
Q Consensus 483 ---------------~~~-----------------------------------------i~~~d~~~-~~~------~~~ 499 (701)
.+. +..|..+. +.. ..+
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 000 11111111 000 000
Q ss_pred cccCCCCCCeEEEEec-C-CEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 005342 500 DIAADPKDSISCFALR-G-SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 576 (701)
Q Consensus 500 ~~~~~~~~~v~~l~~s-~-~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~ 576 (701)
.-..+|...|.++++| + ..+++|+++.+++|+..+.++++++.. ..+.+..|-|.+ ++++|...|.+.+||+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 1114799999999999 4 445555589999999999999999974 378899999999 9999999999999999999
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----Cee-----------------------------ee
Q 005342 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-----WKK-----------------------------LC 622 (701)
Q Consensus 577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-----g~~-----------------------------~~ 622 (701)
..+.+.+.|.+.|++++.+||+..+++||.|.+|++||..- |.. ..
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999642 110 00
Q ss_pred ---------------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEE
Q 005342 623 ---------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMF 682 (701)
Q Consensus 623 ---------------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~f 682 (701)
.+..-++. ||. -||.|+.+|||++++++| .|.+|+||-+.=|.|.+++.+ |.++.|
T Consensus 525 VsLLdnTVkVyflDtlKFflsLY-GHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLY-GHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred EEeccCeEEEEEecceeeeeeec-ccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 00000011 444 899999999999999996 899999999999999999988 899999
Q ss_pred EeeEEeeee
Q 005342 683 VQIVVKFHS 691 (701)
Q Consensus 683 s~~~~~f~~ 691 (701)
-|....|++
T Consensus 601 ~P~~~~FFt 609 (888)
T KOG0306|consen 601 LPKTHLFFT 609 (888)
T ss_pred cccceeEEE
Confidence 887665543
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=251.17 Aligned_cols=286 Identities=14% Similarity=0.163 Sum_probs=235.7
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCce
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS 395 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V 395 (701)
+..+.+.|. ++.|+|. =-.|.+.|||.++....+.+ +- ....|
T Consensus 9 ~~~rSdRVK--sVd~HPtePw~la~LynG~V~IWnyetqtmVksf----------eV------------------~~~Pv 58 (794)
T KOG0276|consen 9 FQSRSDRVK--SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF----------EV------------------SEVPV 58 (794)
T ss_pred hhccCCcee--eeecCCCCceEEEeeecCeeEEEecccceeeeee----------ee------------------cccch
Confidence 344667777 8888877 35789999999988777662 11 01127
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
++..|-+.-+.+++|+.|..|++++.+ +++..+ .+..|.+.|.+++.+|...+++++|.|-.|++||++.
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnyn----t~ekV~---~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--- 128 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYN----TGEKVK---TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--- 128 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEecc----cceeeE---EeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---
Confidence 778899999999999999999999998 554333 4567999999999999999999999999999998733
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
+-.....+ .+|...|.+++|. .+.+++++ |++|++|.+....+..++.+|...|+|+
T Consensus 129 ------------------~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 129 ------------------EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred ------------------ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 22111223 5899999999999 77899999 9999999999999999999999999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 552 ILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 552 ~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
.+-+.| ++++|++|.+|+|||..+..+++++.||...|+.+.|+|.-..++|||+||+++||+..+-+... .
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~--t--- 264 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK--T--- 264 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh--h---
Confidence 999877 99999999999999999999999999999999999999999999999999999999999854322 1
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+.-+. ..+++|+-.+.+..+++|.|....+..+..+++..++..
T Consensus 265 Ln~gl----eRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~ 308 (794)
T KOG0276|consen 265 LNYGL----ERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDS 308 (794)
T ss_pred hhcCC----ceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecC
Confidence 22233 789999999998889999666666666666666555544
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.8e-27 Score=241.42 Aligned_cols=258 Identities=21% Similarity=0.257 Sum_probs=218.7
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+++|.. |.+++|+|+++++++++.||.+.+|++. .+.... ....|...+..+.|+|+++.+++++.||.+.+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee----CCCcEE---EEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 567888 9999999999999999999999999997 333222 22347788899999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
|++. ++..... + ..|...+.++.|+ +.++++++ +|.|.+||+.+++....+..|
T Consensus 78 ~~~~---------------------~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 78 WDLE---------------------TGECVRT-L-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred EEcC---------------------cccceEE-E-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 9763 3222211 2 3577789999999 67888888 999999999989988888888
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
...+.+++++|++ ++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||+.+++...
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~- 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG- 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec-
Confidence 9999999999999 88888889999999999999999999999999999999999999999999999999999864321
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe-cCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
. +. .|. ..+.++.|+|++.+++++. |+.|++||+.+++....+.+ |.+++|+|.
T Consensus 214 -~---~~-~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 214 -T---LR-GHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred -c---hh-hcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 1 21 343 7899999999988888875 99999999999998888876 899999876
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.9e-29 Score=249.78 Aligned_cols=278 Identities=14% Similarity=0.158 Sum_probs=226.9
Q ss_pred ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASSGDDSNDS 386 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~ 386 (701)
+.+.++++.+|+..|+ ++.|.|. +.|+.|+||++.. +.|+++ +
T Consensus 203 Pkk~~~~~~gH~kgvs--ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt----------f---------------- 254 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVS--AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT----------F---------------- 254 (503)
T ss_pred cHhheeeccCCccccc--hhhhccceeeEEEecCCCceEEEEEEecCcceehh----------h----------------
Confidence 5577889999999999 9999995 9999999999987 777776 2
Q ss_pred ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCc
Q 005342 387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTAT 464 (701)
Q Consensus 387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~ 464 (701)
.||.. |..++|+++|..+.|++.|+.+++||++ +|++.. .+ . ....++|+.|.||+ +.+++|+.|+.
T Consensus 255 ---~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE----TG~~~~-~f--~-~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 255 ---KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE----TGQVLS-RF--H-LDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred ---hcchhhhhhhhccccCCeeeeeecceeeeeeccc----cceEEE-EE--e-cCCCceeeecCCCCCcEEEEecCCCc
Confidence 46777 9999999999999999999999999999 887765 22 1 34678999999999 78899999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
|+.||+ .+++++.. + ..|-+.|..+.|- |.++++.+ |+.+++|+.+.+..+..+
T Consensus 324 i~~wDi---------------------Rs~kvvqe-Y-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 324 IRQWDI---------------------RSGKVVQE-Y-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred EEEEec---------------------cchHHHHH-H-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 999965 56665542 2 3688899999998 88999999 899999999887765544
Q ss_pred c-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 542 A-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 542 ~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
. .......++..+|++ ++++-+.|+.|.++.+... ...+.++||.. .-..+.|||||.+|++|+.||.+.+||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 3 234456789999999 9999999999999986542 33456788864 456789999999999999999999999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEEEEE
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYE 664 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~iwd 664 (701)
.++-+ .+..+. .|. .++..+.|+|.. ..+|+ |.||.|++||
T Consensus 461 wkt~k-----l~~~lk-ah~---~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTK-----LVSKLK-AHD---QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhh-----hhhccc-cCC---cceEEEEecCCCcceeEecccCceeEecC
Confidence 99843 333333 344 899999999974 45566 5899999996
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=248.77 Aligned_cols=302 Identities=13% Similarity=0.188 Sum_probs=243.7
Q ss_pred CcccccccCcccee---------EEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCC
Q 005342 307 DKLKFPSMDKSRLL---------SLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQE 371 (701)
Q Consensus 307 ~~i~iwd~~~~~~~---------~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 371 (701)
+.+..+.++..... -.+.+|...|. .+++|.+ +..+.+++|+..+++|++++ +
T Consensus 344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR--sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi----------~ 411 (888)
T KOG0306|consen 344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR--SLCVSSDSILLASGAGESIKIWNRDTLKCIRTI----------T 411 (888)
T ss_pred CceEEEEeccCCCCCccccccceeeeccchhhee--EEEeecCceeeeecCCCcEEEEEccCcceeEEe----------c
Confidence 56666665542111 35678999999 9999988 67799999999999999983 2
Q ss_pred CCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (701)
Q Consensus 372 ~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp 451 (701)
.. .+-+..|-|.++++++|...|.+.++|+. ...... ....|.+.+++++.+|
T Consensus 412 ~~--------------------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla----S~~l~E---ti~AHdgaIWsi~~~p 464 (888)
T KOG0306|consen 412 CG--------------------YILASKFVPGDRYIVLGTKNGELQVFDLA----SASLVE---TIRAHDGAIWSISLSP 464 (888)
T ss_pred cc--------------------cEEEEEecCCCceEEEeccCCceEEEEee----hhhhhh---hhhccccceeeeeecC
Confidence 21 15678899999999999999999999998 333332 2235999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEE
Q 005342 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 528 (701)
Q Consensus 452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~ 528 (701)
|++.+++||.|.+|++||........|... ++......+. + .-...|.|+++| |.+++++- |.+++
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~-----k~lsl~~~rt----L--el~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQK-----KVLSLKHTRT----L--ELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccc-----eeeeeccceE----E--eccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 999999999999999998732211000000 0000000011 1 235789999999 88888888 99999
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (701)
Q Consensus 529 iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D 607 (701)
+|-+.+.+..-.+.||.-||.|+.+|||+ .+++||.|.+|++|-+.-|.+-+.+-+|...|.++.|-|+..++.++|.|
T Consensus 534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD 613 (888)
T KOG0306|consen 534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD 613 (888)
T ss_pred EEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
+.|+-||-..- ..++.+++|| ..|++++.+|+|.+++++ +|.+|++|.-..
T Consensus 614 ~kvKqWDg~kF-----e~iq~L~~H~----~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 614 GKVKQWDGEKF-----EEIQKLDGHH----SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceEEeechhhh-----hhheeeccch----heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999998874 3344355555 899999999999999995 899999998644
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=217.37 Aligned_cols=261 Identities=12% Similarity=0.098 Sum_probs=220.8
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+..|.+ |..+.|+-||+|.++|+.|.+|++|+.. .+.+.+ +..+|...|..++.+.|...+++|+.|..+.+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~----rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL----RGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeeccc----ccceee---eecCCCceeeeccccccccccccCCCCceEEE
Confidence 567788 9999999999999999999999999997 676666 66789999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEEEEec
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATFA 542 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~~~~~ 542 (701)
||+ .+|+...+ + .+|.+.|+.+.|+ ...+++|+ |.++++||.++. ++++.+.
T Consensus 86 wDV---------------------~TGkv~Rr-~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 86 WDV---------------------NTGKVDRR-F-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred EEc---------------------ccCeeeee-c-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence 954 77777655 4 5899999999999 77899999 999999998764 5788888
Q ss_pred CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 543 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 543 ~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
.....|.++.++.. .|++|+.||+++.||++.|+....+-|| +|+++.|++|++....++.|+++++.|-.+|+.+.
T Consensus 143 ea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred hhcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 77888999888655 7999999999999999999888776655 69999999999999999999999999999986432
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEEee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKF 689 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f 689 (701)
...||... ..-...+++....++++| .||.+++||+..++.+..++. |+++++-|....|
T Consensus 220 ------sYkGhkn~-eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 220 ------SYKGHKNM-EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred ------Hhcccccc-eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 22255411 223455667777888886 899999999999998888876 7788888776655
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.2e-28 Score=233.43 Aligned_cols=295 Identities=16% Similarity=0.177 Sum_probs=221.7
Q ss_pred ecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 325 QIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
.|.++|. ++.-.+. +.||++++||... ++... +.||.+ |.++
T Consensus 103 ~hdDWVS--sv~~~~~~IltgsYDg~~riWd~~G-k~~~~-----------------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 103 LHDDWVS--SVKGASKWILTGSYDGTSRIWDLKG-KSIKT-----------------------------IVGHTGPIKSV 150 (423)
T ss_pred cchhhhh--hhcccCceEEEeecCCeeEEEecCC-ceEEE-----------------------------EecCCcceeee
Confidence 4788888 7766677 8899999999753 33333 237777 8877
Q ss_pred EEcC-C--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 399 TSLP-D--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 399 ~~sp-d--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+|.- + ...+++++.|.++++|.++.......+.. .-.+|...|.++...++|..+++|+.|..+.+|+......
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc
Confidence 7743 3 33699999999999999973221111111 2238999999999999999999999999999999443332
Q ss_pred cccccccc--eeeEEeeCCCC--eEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342 476 SLEEENVN--MESQLYQPSSK--LVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 476 ~~g~~~~~--~~i~~~d~~~~--~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
........ -.-...+...+ ..+. ...+|..+|.++.|+ ...+++++ |.+|+.||+.++..+.++. ....+.
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~v--tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~ 304 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLV--TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLN 304 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceE--EecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCccee
Confidence 11111000 00000011222 2222 225999999999999 88999999 9999999999999988887 456789
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 550 YFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
++..+|.. +|++|+.|..|++||.+++. +.+.|.||++.|.++.|+|. ...|++|+.|+++++||+++-. .
T Consensus 305 ~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k----~ 380 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK----A 380 (423)
T ss_pred EeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC----C
Confidence 99999998 99999999999999998753 46789999999999999995 5588999999999999999842 3
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
++..+. +|. ..|.++.|+. +..+++| .|++|+|+.-.
T Consensus 381 plydI~-~h~---DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 381 PLYDIA-GHN---DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cceeec-cCC---ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 555444 444 8999999984 5677885 89999998753
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.6e-29 Score=239.48 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=212.3
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD 381 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D 381 (701)
++|+|||..+-.++..|.+|++.|. |+.|-.- +.|.||++||+++|+++.++
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVL--CLqyd~rviisGSSDsTvrvWDv~tge~l~tl--------------------- 273 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVL--CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL--------------------- 273 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEE--eeeccceEEEecCCCceEEEEeccCCchhhHH---------------------
Confidence 8999999999999999999999999 9999876 89999999999999998883
Q ss_pred CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
-+|.. |-.+.|+.. ++++++.|.++.+||+.... ...+.. ...+|...|..+.|+ .+++++++
T Consensus 274 --------ihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps-~it~rr---VLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 274 --------IHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPT-DITLRR---VLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred --------hhhcceeEEEEEeCC--EEEEecCCceeEEEeccCch-HHHHHH---HHhhhhhheeeeccc--cceEEEec
Confidence 25666 888888755 99999999999999997422 111222 234799999999986 56999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
.|.++++|+ ..++.++.. + .+|...|-|+.+.|+++++|+ |.+|++||+..|.+++
T Consensus 338 gDRTikvW~---------------------~st~efvRt-l-~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 338 GDRTIKVWS---------------------TSTCEFVRT-L-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred CCceEEEEe---------------------ccceeeehh-h-hcccccceehhccCeEEEecCCCceEEEEeccccHHHH
Confidence 999999995 467777653 3 589999999999999999999 9999999999999999
Q ss_pred EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc---------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~---------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
.++||..-|.++.|... .|++|..||+|++||+.++. ++.++..|++.|..+.| |...+++++.|.+|
T Consensus 395 vLeGHEeLvRciRFd~k-rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDNK-RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred HHhchHHhhhheeecCc-eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeE
Confidence 99999999999999654 89999999999999998754 23455669999999999 56789999999999
Q ss_pred EEEECCCCe
Q 005342 611 CVWDAVGWK 619 (701)
Q Consensus 611 ~vwd~~~g~ 619 (701)
-|||.-.+.
T Consensus 472 LiWdFl~~~ 480 (499)
T KOG0281|consen 472 LIWDFLNGP 480 (499)
T ss_pred EEEEcCCCC
Confidence 999998863
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.2e-28 Score=254.38 Aligned_cols=245 Identities=16% Similarity=0.196 Sum_probs=212.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|..++|||....++++-..|.|++||.. .+.+.. .+..|.++|..+.|+|++..+++|+.|-.|+||+.
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYR----M~tli~---rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY---- 80 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYR----MGTLID---RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY---- 80 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhh----hhhHHh---hhhccCCccceeeecCCCCeEEecCCccEEEEEec----
Confidence 7889999999999999999999999998 565554 56679999999999999999999999999999965
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.+.+++-+ + .+|...|..+.|+ --+|++++ |.+|+||+..+++++..+.||...|+|.
T Consensus 81 -----------------k~rrclft-L-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA 141 (1202)
T KOG0292|consen 81 -----------------KTRRCLFT-L-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA 141 (1202)
T ss_pred -----------------ccceehhh-h-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence 45555432 3 4899999999999 67899999 8999999999999999999999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCc-----------------------------eEEeecCCCCCeEEEEEecCCCEE
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKK-----------------------------TKAKLKGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~-----------------------------~~~~l~~h~~~V~~v~~spdg~~l 601 (701)
.|+|.. .|+++|-|.+|++||+..-+ ..+.+.||...|+-++|+|.-.++
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 999988 99999999999999985210 235678999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+||++|..|++|.+...+ ...+.+. .||. +.|.++-|+|...++++ |.|++|+|||+.+-+.++++..
T Consensus 222 VSG~DDRqVKlWrmnetK---aWEvDtc-rgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETK---AWEVDTC-RGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred EecCCcceeeEEEecccc---ceeehhh-hccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 999999999999988643 2233322 2666 99999999999999998 6999999999998888888854
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.7e-26 Score=268.13 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=206.9
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce---eEeecCCCCCCCCEEEEEEecC-CCEEEEEECCC
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTA 463 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~---~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg 463 (701)
+.+|.+ |.+++|+|+|+++|+|+.|+.|++|+.......+.. ....+ .+...+.+++|+|. +.++++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCC
Confidence 346888 999999999999999999999999998532111110 01111 23467999999874 78999999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
+|++||+ .+++.+.. + .+|...|++++|+ +.+|++|+ ||.|++||++++..+.
T Consensus 556 ~v~lWd~---------------------~~~~~~~~-~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 556 VVQVWDV---------------------ARSQLVTE-M-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eEEEEEC---------------------CCCeEEEE-e-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 9999965 44554432 2 4799999999997 67899999 9999999999999888
Q ss_pred EecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 540 TFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 540 ~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
.+.. ...+.++.|++ +| .+++|+.||.|++||++++. .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus 613 ~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 613 TIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 8874 46789999954 57 99999999999999998765 567788999999999997 78899999999999999998
Q ss_pred CCee-eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee----------------e-e
Q 005342 617 GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL----------------L-I 677 (701)
Q Consensus 617 ~g~~-~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~----------------~-i 677 (701)
.+.. .....+..+. +|. ..++.++|+|++.+|++| .|+.|++|+......+..+. . |
T Consensus 691 ~~~~~~~~~~l~~~~-gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 691 MSISGINETPLHSFM-GHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred CCccccCCcceEEEc-CCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 5321 0112333233 565 889999999999999997 79999999987654432221 1 7
Q ss_pred eEEEEEeeE
Q 005342 678 SHIMFVQIV 686 (701)
Q Consensus 678 ~~~~fs~~~ 686 (701)
.+++|+|..
T Consensus 767 ~~v~ws~~~ 775 (793)
T PLN00181 767 SSVCWRGQS 775 (793)
T ss_pred EEEEEcCCC
Confidence 888888753
No 53
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=242.93 Aligned_cols=311 Identities=16% Similarity=0.203 Sum_probs=243.6
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
|.+++||+.+++.+++++++.+.|+ ++.-+|- ..+|+|.+.|+..++.+..+
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT--~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF------------------- 240 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRIT--AIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF------------------- 240 (910)
T ss_pred CcEEEEEeccCcEEEEeccccccee--EeccCCcceEEEEeccCceEEEEEcccCcEEEEE-------------------
Confidence 8999999999999999999999999 9999997 78999999999999988873
Q ss_pred CCCCCCCccccCCC-c-eEEEEEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 380 GDDSNDSSCFNDNN-Q-SRESTSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 380 ~D~~~~~~~l~~h~-~-V~~l~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
.|+ + |++++|..||+. +|+|+..|.+.+||+++. +... ...+.|.+.|....|-|....+
T Consensus 241 -----------k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k----kl~~--v~~nah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 241 -----------KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK----KLIN--VTRNAHYGSVTGATFLPGEPVL 303 (910)
T ss_pred -----------EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC----eeee--eeeccccCCcccceecCCCceE
Confidence 343 4 999999999985 566777799999999832 1111 1223466667777777777777
Q ss_pred EEEECCCcEEEEecCCCCc-------cc------------------------------------------cc--------
Q 005342 457 VALTQTATHKLWKWQSNKQ-------SL------------------------------------------EE-------- 479 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~-------~~------------------------------------------g~-------- 479 (701)
++++.|+.+++|-.+++.- .. |.
T Consensus 304 ~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 304 VTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred eeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 7777777777665442211 00 00
Q ss_pred cccce----------------------------------e----------------------------------------
Q 005342 480 ENVNM----------------------------------E---------------------------------------- 485 (701)
Q Consensus 480 ~~~~~----------------------------------~---------------------------------------- 485 (701)
..... .
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~ 463 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV 463 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence 00000 0
Q ss_pred --------eEEeeCCCCeEEeecc--cCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 486 --------SQLYQPSSKLVMTNDI--AADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 486 --------i~~~d~~~~~~~~~~~--~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
|.+|+.++|..... + .+.|..+|+.++.+ ++.+++++ +|.+.+||+.+...+..+. -...+.++.
T Consensus 464 ~IG~S~G~Id~fNmQSGi~r~s-f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv 541 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIHRKS-FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIV 541 (910)
T ss_pred EEeccCCeEEEEEcccCeeecc-cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceee
Confidence 44445555543322 2 23688999999999 88889888 9999999999888777776 466788899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~ 631 (701)
.+... .++++..|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++..+....+.
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---- 617 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---- 617 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC----
Confidence 99888 9999999999999999999999999999999999999999999999999999999999998755433333
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEE-ec-CeEEEEECCC
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLSI-HE-GQIDVYEAPT 667 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~sg-~D-g~I~iwd~~~ 667 (701)
.+++++.|||+|.+||+. .| ..|++|.-.+
T Consensus 618 ------~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 618 ------SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ------CcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 889999999999999996 34 6799997543
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=6.3e-28 Score=241.17 Aligned_cols=263 Identities=11% Similarity=0.142 Sum_probs=219.1
Q ss_pred ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
+.||+. |+++.|.| .+.+|++|+.|+.|+||++.. .+.|.+ ++.+|..+|.+++|+++|..++++|.|+.++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLR---TFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEec---Ccceeh---hhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 679999 99999999 899999999999999999984 466666 6778999999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
+| |.++|++... +. ....++|+.+. + +.+++|+ |+.|+.||+++++.++.+.
T Consensus 284 lw---------------------DtETG~~~~~-f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 284 LW---------------------DTETGQVLSR-FH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred ee---------------------ccccceEEEE-Ee--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 99 5577887654 32 34577888888 4 6777777 9999999999999999999
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
.|-+.|..+.|-++| .+++.++|++++||+.+..-.++.... +.-...++..+|++++++.=+.|+.|.++.+...-
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~- 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF- 418 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-
Confidence 999999999999999 999999999999999988876654433 22245688999999999999999999999976521
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
... ......||.. .+.-..+.|||||++|++| .||.+.+||..+-+.+..++. ++++.|-|-
T Consensus 419 -r~n-kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 419 -RLN-KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred -ccC-Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 111 1123335541 2556789999999999998 799999999999999888887 788888654
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.5e-27 Score=216.05 Aligned_cols=287 Identities=12% Similarity=0.073 Sum_probs=229.6
Q ss_pred EEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc---ccCCCc-eE
Q 005342 321 SLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC---FNDNNQ-SR 396 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~---l~~h~~-V~ 396 (701)
.+..+|+.+|. .++|||-..||..-|=-...+..... .|. ++.. +.||.+ ||
T Consensus 8 l~c~ghtrpvv--dl~~s~itp~g~flisa~kd~~pmlr-----------~g~-----------tgdwigtfeghkgavw 63 (334)
T KOG0278|consen 8 LTCHGHTRPVV--DLAFSPITPDGYFLISASKDGKPMLR-----------NGD-----------TGDWIGTFEGHKGAVW 63 (334)
T ss_pred eEEcCCCccee--EEeccCCCCCceEEEEeccCCCchhc-----------cCC-----------CCCcEEeeeccCccee
Confidence 35678999999 99999987777666543333332211 011 2222 789999 99
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
+.....|...-|+++.|-+.++||.- +|.... .+ .|..-|.+++|+.|.++|++|+.+..++|+|++..+
T Consensus 64 ~~~l~~na~~aasaaadftakvw~a~----tgdelh---sf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-- 133 (334)
T KOG0278|consen 64 SATLNKNATRAASAAADFTAKVWDAV----TGDELH---SF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-- 133 (334)
T ss_pred eeecCchhhhhhhhcccchhhhhhhh----hhhhhh---hh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--
Confidence 99999999999999999999999987 443322 12 377889999999999999999999999999874431
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 553 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~ 553 (701)
.... .+ .+|.+.|..+-|. ++.+++.+ |++|++||.+++..++++. .+.+|+++.+
T Consensus 134 -----------------App~--E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 134 -----------------APPK--EI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred -----------------CCch--hh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence 1111 13 4899999999998 77788877 8999999999999999997 6789999999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342 554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (701)
Q Consensus 554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~ 633 (701)
+++|.+++-...+.|..||..+..+++.++ -...|.+...+|+...+++|+.|..++.||..+|+.+.. ...+|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-----~nkgh 266 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-----YNKGH 266 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeee-----cccCC
Confidence 999955566677899999999999988877 445689999999999999999999999999999964432 22355
Q ss_pred CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCcee
Q 005342 634 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 634 ~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~ 671 (701)
. ++|.|+.|+|||..-++| .||+|++|....++.-
T Consensus 267 ~---gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 267 F---GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred C---CceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 4 999999999999999997 8999999999766543
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=249.00 Aligned_cols=276 Identities=19% Similarity=0.213 Sum_probs=232.3
Q ss_pred cCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342 326 IMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST 399 (701)
Q Consensus 326 h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~ 399 (701)
+...+. |..|.++ +.|++|.+||..++..+.. -+.||.+ |++++
T Consensus 207 ~~~~~~--~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~----------------------------~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 207 DDHVVL--CLQLHDGFFKSGSDDSTLHLWDLNNGYLILT----------------------------RLVGHFGGVWGLA 256 (537)
T ss_pred Ccchhh--hheeecCeEEecCCCceeEEeecccceEEEe----------------------------eccCCCCCceeEE
Confidence 455667 8888866 8999999999998877665 1458888 99999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 479 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~ 479 (701)
+..-+.++++|+.|.++++||.. +++|.. .+.+|.+.|.++... +..+++|+.|.+|++|++
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~----sg~C~~---~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v--------- 318 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCS----TGECTH---SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV--------- 318 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecC----CCcEEE---EecCCCceEEEEEcc--CceEeeccCCceEEEEec---------
Confidence 98888999999999999999988 888887 445789999888765 446788899999999965
Q ss_pred cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCe
Q 005342 480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDL 558 (701)
Q Consensus 480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~ 558 (701)
+++.++.. + .+|..+|.++..++.++++|+ |+.|++||+.++++++++.+|...|.++.+.+...
T Consensus 319 ------------~n~~~l~l-~-~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~ 384 (537)
T KOG0274|consen 319 ------------TNGACLNL-L-RGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENR 384 (537)
T ss_pred ------------cCcceEEE-e-ccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcce
Confidence 56666642 3 469999999999999999999 99999999999999999999999999998887348
Q ss_pred EEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 559 FAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 559 l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
+++|+.|++|++||+++. +++.++.+|.+.+..+.+ .+++|++++.|++|++||...++.. +.+. +.|.
T Consensus 385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~--~~~~---~~~~--- 454 (537)
T KOG0274|consen 385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL--RTLE---GRHV--- 454 (537)
T ss_pred EEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee--eeec---cCCc---
Confidence 999999999999999999 999999999998866644 6789999999999999999997633 3333 2243
Q ss_pred CCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342 638 TIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
..|..+++. +...++++.||++++||++++++.+.+
T Consensus 455 ~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 455 GGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 788888877 445555579999999999999998866
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=238.33 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=212.5
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
..|.. |.++.+||....++++-.+|.|.||+.+ +....+ .+.-...+|.+..|-+--+++++|+.|..|+||
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye----tqtmVk---sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE----TQTMVK---SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecc----cceeee---eeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 34666 9999999999999999999999999998 333222 222246789999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC-cEEEEecCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~ 544 (701)
+. .+++.+.. + ..|...|.+++.+ ..++++++ |-.|++||.+.+ .+.++|.||
T Consensus 83 ny---------------------nt~ekV~~-F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 83 NY---------------------NTGEKVKT-F-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred ec---------------------ccceeeEE-e-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 66 44453432 3 4799999999999 78999999 899999999764 688999999
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCee
Q 005342 545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
...|++++|.|.. .+|+++-|++|++|.+.+..+..++.||...|+++.+-| |.++|+||++|.+|+|||..+..
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~- 218 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS- 218 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-
Confidence 9999999999988 999999999999999999999999999999999999987 44699999999999999999943
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|...+. ||. ..|..+.|+|.-..+++| .||+++||+..|-++.+++.-
T Consensus 219 -CV~TLe----GHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 219 -CVQTLE----GHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred -HHHHhh----ccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 444444 887 999999999999999997 899999999988776666553
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=221.01 Aligned_cols=259 Identities=14% Similarity=0.150 Sum_probs=207.6
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.|..|.. |.+++.+|+.++++||+.|....+|+.. ++.... ...+|...|+++.||.||.+|++|+.+|.|.
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~----~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS----TGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc----CCccee---EecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 3678999 9999999999999999999999999998 554222 3457999999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
||+. .++..... +. ..-..+.-+.|+ +..|+.|+ ||.+.+|.+.++...+.+.|
T Consensus 132 v~~~---------------------stg~~~~~-~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 132 VFKV---------------------STGGEQWK-LD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EEEc---------------------ccCceEEE-ee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 9965 34442221 11 234566677777 88899999 99999999999888999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--------------------------------------
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------------------------------------- 584 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-------------------------------------- 584 (701)
|..++++=.|.|+| .+++|..||+|++||+.+++++.++.+
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 99999999999999 999999999999999999887665541
Q ss_pred -------------CCCCeEEEE---EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 585 -------------HQNRITCLA---YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 585 -------------h~~~V~~v~---~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
+...+.++. |+..-++.|+|+-||+|.|||+....... + ..|. .+|+.+.|-+
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~------~-c~he---~~V~~l~w~~- 337 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH------I-CEHE---DGVTKLKWLN- 337 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe------e-ccCC---CceEEEEEcC-
Confidence 111122232 33344577889999999999999854221 1 1333 8899999999
Q ss_pred CCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 649 QIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 649 g~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
..+|+++ .||.|+.||.++|+++.++.| |..++++|...
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR 381 (399)
T ss_pred cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCc
Confidence 6677764 899999999999999999999 88999988543
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.8e-26 Score=209.48 Aligned_cols=275 Identities=11% Similarity=0.125 Sum_probs=220.5
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
+.+++|...+. +++|+-+ +.|+++++|++..++.... ...++|.
T Consensus 14 r~~~~~~~~v~--Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------------~~~~gh~ 64 (313)
T KOG1407|consen 14 RELQGHVQKVH--SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------------LVYRGHT 64 (313)
T ss_pred HHhhhhhhcce--EEEEcccCceeeecccCCceEEEEecchhhhhh---------------------------hcccCCC
Confidence 34577888888 9999988 8999999999988743332 1235788
Q ss_pred c-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 394 Q-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 394 ~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
+ |-.++|+| ....+++++.|.+|++||.. .+++..... ....=..+.|+|+|.++++++.|..|...|.
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r----~~k~~~~i~----~~~eni~i~wsp~g~~~~~~~kdD~it~id~- 135 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIR----SGKCTARIE----TKGENINITWSPDGEYIAVGNKDDRITFIDA- 135 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEec----cCcEEEEee----ccCcceEEEEcCCCCEEEEecCcccEEEEEe-
Confidence 7 88999986 56789999999999999998 555544221 2334456789999999999999999998855
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
.+.+.+.. ......+..++|+ +++++..+ .|.|.|......+++..++.|+...
T Consensus 136 --------------------r~~~~~~~---~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 136 --------------------RTYKIVNE---EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred --------------------cccceeeh---hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 33333321 2345567788888 66655555 6999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
.||.|+|+| ++|+|+.|..+.+||+...-+++.+.-+.-+|..+.||.||++||+||+|..|-|=++++|.++...+-.
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence 999999999 9999999999999999999889999989999999999999999999999999999999999744322212
Q ss_pred eccCCCCCCCCCeEEEEEcCCCCEEEE-Ee---c------CeEEEEECC
Q 005342 628 SFQTGLVPETTIVNHIQFHPDQIHLLS-IH---E------GQIDVYEAP 666 (701)
Q Consensus 628 ~~~~~~~~~~~~v~~v~~spdg~~l~s-g~---D------g~I~iwd~~ 666 (701)
++...|+|+|...+||. ++ + |++++|-+.
T Consensus 273 ----------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 273 ----------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ----------CCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 78899999999999986 32 2 467776553
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=231.43 Aligned_cols=282 Identities=14% Similarity=0.123 Sum_probs=228.6
Q ss_pred cCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342 314 MDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS 386 (701)
Q Consensus 314 ~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~ 386 (701)
.-+.+....+..|.+.+. .+.|-++ +.|..|++|++..+++-..
T Consensus 162 ~lpS~~~~~ld~h~gev~--~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~--------------------------- 212 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVH--DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI--------------------------- 212 (459)
T ss_pred ccchhhhhhhhccccccc--eeEEccCcchhhhcchhhhhhhhhcccchhhhh---------------------------
Confidence 345677778899999999 9999988 8999999999987763222
Q ss_pred ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
..|.|-.+ |.++.|.++++.+++++.|+.+++|+++ ..+... ++.+|.+.|+++.|......+++|+.|.++
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~~r~~~---TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----SLRLRH---TLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----chhhhh---hhcccccceeeehhhccccceeeccccchh
Confidence 12344455 9999999999999999999999999998 554444 667899999999999888779999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
+.||+ ..+.+....+ ....+.++..++..+++|- |++|++||+++..+....+.+
T Consensus 286 K~WDl---------------------~k~~C~kt~l---~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g 341 (459)
T KOG0288|consen 286 KLWDL---------------------QKAYCSKTVL---PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG 341 (459)
T ss_pred hhhhh---------------------hhhheecccc---ccccccceEecceeeeecccccceEEEeccCCceeeEeecC
Confidence 99976 3344443222 2345566666666778888 999999999999999998855
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
. .|+++..+++| .+.+.+.|.++.+.|+++.+..+.+.. .....+.+.|||++.|+++||.||.|+||++.+|+
T Consensus 342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce
Confidence 4 89999999999 888889999999999999998887764 12358999999999999999999999999999987
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw 663 (701)
.. +.+. . .+.+ ..|++++|+|.|..++++ .++.+.+|
T Consensus 421 lE--~~l~-~--s~s~--~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 421 LE--KVLS-L--STSN--AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EE--EEec-c--CCCC--cceEEEEEcCCCchhhcccCCcceEec
Confidence 43 3333 2 2221 479999999999999885 78889998
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=216.86 Aligned_cols=298 Identities=13% Similarity=0.145 Sum_probs=226.9
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ 394 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~ 394 (701)
.+..|...+. +.+|||| +.|..|+|.|++..-.... ...+..+.+...|+ ....|..|..
T Consensus 107 ylt~HK~~cR--~aafs~DG~lvATGsaD~SIKildvermlaks~-~~em~~~~~qa~hP----------vIRTlYDH~d 173 (430)
T KOG0640|consen 107 YLTSHKSPCR--AAAFSPDGSLVATGSADASIKILDVERMLAKSK-PKEMISGDTQARHP----------VIRTLYDHVD 173 (430)
T ss_pred EEeeccccee--eeeeCCCCcEEEccCCcceEEEeehhhhhhhcc-hhhhccCCcccCCc----------eEeehhhccC
Confidence 4678999999 9999999 8999999999973211100 00011112222333 2344889999
Q ss_pred -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
|+++.|+|....|++|+.|++|+++|+.. +...+.+. .-....+|.++.|+|.|.++++|.....+++||+++.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK---~saKrA~K--~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSK---TSAKRAFK--VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEeccc---HHHHHHHH--HhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 99999999999999999999999999973 11111111 1124678999999999999999999999999977543
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC-CCCe
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP-PPIA 548 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~-~~~i 548 (701)
++ .+......+|.+.|+++.++ |++.++++ ||.|++||--+++++.++. .| ...|
T Consensus 249 Qc--------------------fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 249 QC--------------------FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred eE--------------------eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence 22 11111224789999999999 99999999 9999999988999998885 34 5679
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CC---CeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeee
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QN---RITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL 621 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~---~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~ 621 (701)
++..|..+| ++++.+.|..+++|.+.++..+.++.|- ++ .-+...|+....|++.-.+ .+.++-||.+++.+.
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999999999 9999999999999999999999998863 11 2345577777778776544 568999999997533
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
.. +.-||. +.+..+.-||.+.-++++ +|..+++|--
T Consensus 389 ~l-----~slgHn---~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 AL-----LSLGHN---GAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hh-----cccCCC---CCceEEEeCCCCCceeeecccceeeeeee
Confidence 21 334666 999999999999999985 8899999953
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.3e-27 Score=215.07 Aligned_cols=247 Identities=15% Similarity=0.224 Sum_probs=213.1
Q ss_pred cccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCC
Q 005342 310 KFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDD 382 (701)
Q Consensus 310 ~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~ 382 (701)
.+-+.++|.-+-++.+|.+.|| ....+.+ +.|=+-++||.-+|..+..+
T Consensus 42 mlr~g~tgdwigtfeghkgavw--~~~l~~na~~aasaaadftakvw~a~tgdelhsf---------------------- 97 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVW--SATLNKNATRAASAAADFTAKVWDAVTGDELHSF---------------------- 97 (334)
T ss_pred hhccCCCCCcEEeeeccCccee--eeecCchhhhhhhhcccchhhhhhhhhhhhhhhh----------------------
Confidence 3445679999999999999999 7777777 78999999999999888773
Q ss_pred CCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342 383 SNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 461 (701)
Q Consensus 383 ~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~ 461 (701)
.|.. |.+++|+.|.++|++|+.++.++++|++....+- . ...+|.+.|..+.|....+.|++.+.
T Consensus 98 --------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App---~---E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 98 --------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP---K---EISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred --------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc---h---hhcCCCCcceeEEEeccCceEEeecc
Confidence 6778 9999999999999999999999999998432221 1 33579999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEE
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLA 539 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~ 539 (701)
|++|++||. .++..+.. + ....+|+++.++ |+++.++..+.|.+||..+...++
T Consensus 164 d~tVRLWD~---------------------rTgt~v~s-L--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 164 DKTVRLWDH---------------------RTGTEVQS-L--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred CCceEEEEe---------------------ccCcEEEE-E--ecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence 999999965 56665543 2 245689999999 666666668999999999999998
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
.+. .+..|.+.+.+|+. .+++|++|..++.||..+++.+..+ +||.++|.|+.|+|||..-++||.||+|++|.+..
T Consensus 220 s~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 220 SYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 887 56678999999999 9999999999999999999999886 89999999999999999999999999999999887
Q ss_pred Ce
Q 005342 618 WK 619 (701)
Q Consensus 618 g~ 619 (701)
++
T Consensus 299 ~~ 300 (334)
T KOG0278|consen 299 GK 300 (334)
T ss_pred CC
Confidence 64
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=239.82 Aligned_cols=268 Identities=11% Similarity=0.082 Sum_probs=202.3
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEecccc------CCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLI------NEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKL 467 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~------~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~v 467 (701)
|+....++|+..+++++.+.....|+.... ...|+...-.....+|.+.|.+++|+| ++++|++|+.||+|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 666777888888888888888888876410 001110000001347899999999999 8899999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
||+...... ......+.. + .+|...|.+++|+ +++|++++ |+.|++||+++++.+..+.+
T Consensus 103 Wdi~~~~~~--------------~~~~~~l~~-L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 103 WGIPEEGLT--------------QNISDPIVH-L-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred EecCCCccc--------------cccCcceEE-e-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 988543110 000111111 2 4799999999999 36899999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC-eEEEEEecCCCEEEEEe----CCCeEEEEECCC
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVG 617 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~v~~spdg~~l~s~s----~D~~I~vwd~~~ 617 (701)
|...|.+++|+|+| ++++|+.|+.|++||+++++.+..+.+|.+. +..+.|.|++..+++++ .|+.|++||+++
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 99999999999999 9999999999999999999999999999764 45788999888777654 479999999987
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI 685 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~ 685 (701)
.. .++.....+.. ..+....|+|++++++++ .|+.|++||+.+++.+..... +.+++|.|.
T Consensus 247 ~~----~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 247 MA----SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CC----CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 53 22221211222 556677899999998874 499999999999988776543 667777554
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=206.84 Aligned_cols=285 Identities=14% Similarity=0.128 Sum_probs=222.5
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ 394 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~ 394 (701)
.+++|..+++ .+.|+.+ +.|.+..||-..+|+.+-+ +.||.+
T Consensus 5 ~l~GHERplT--qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt-----------------------------y~GHtG 53 (327)
T KOG0643|consen 5 LLQGHERPLT--QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT-----------------------------YDGHTG 53 (327)
T ss_pred ccccCccccc--eEEecCCCcEEEEecCCCCceEEEecCCceeee-----------------------------ecCCCc
Confidence 3688999999 9999998 8999999998888877766 258888
Q ss_pred -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-----CcEEEE
Q 005342 395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHKLW 468 (701)
Q Consensus 395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~i~vw 468 (701)
||++...-+.+.+++|+.|.++++||+. +|++....- ...+|..+.|+++|++++.+..+ +.|.++
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~----tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVE----TGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcC----CCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 9999999999999999999999999998 776655221 35789999999999988777653 678888
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEEecCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLATFANP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~ 544 (701)
|++.... +..+.....+ + ..+...++.+-|+ +++|++|. ||.|..||+++|+ .+.....|
T Consensus 126 di~~~~~--------------~~~s~ep~~k-I-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h 189 (327)
T KOG0643|consen 126 DIRDDSS--------------DIDSEEPYLK-I-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH 189 (327)
T ss_pred EccCChh--------------hhcccCceEE-e-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence 7753221 2223332222 2 2466889999999 99999999 9999999999985 56666778
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe--EEEEECCCCee-
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ--LCVWDAVGWKK- 620 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~--I~vwd~~~g~~- 620 (701)
...|+.+.++||. ++++|+.|.+-++||..+.++++++. ...+|++.+++|....++.|+.... |.-=+.+.|+-
T Consensus 190 ~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE 268 (327)
T KOG0643|consen 190 SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE 268 (327)
T ss_pred ccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchh
Confidence 9999999999999 99999999999999999999999988 5679999999998777776654322 22222223311
Q ss_pred ------eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 621 ------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 621 ------~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
+..+.+..+. ||- ++|++++|+|+|+..++| .||.|++.-..
T Consensus 269 ArFyh~i~eEEigrvk-GHF---GPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 269 ARFYHLIFEEEIGRVK-GHF---GPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred hhHHHHHHHHHhcccc-ccc---cCcceeEECCCCcccccCCCCceEEEEEec
Confidence 1112233222 555 999999999999999996 89999997654
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-24 Score=203.92 Aligned_cols=266 Identities=14% Similarity=0.095 Sum_probs=207.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i 465 (701)
+..-.. |+++.|+++|..+++++.|.++++||.. .+.... ....+.-.|..+.|......++.++. |.+|
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~----~g~~~~---ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL----SGKQVK---TINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC----CCceee---EeecccccccEEEEecCCceEEEccCCCCCce
Confidence 444444 9999999999999999999999999998 454433 11234567888899888887887777 7888
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
+..+ ..+++.+.. + .||...|.+++.+ ++.+++++ |++|++||++..++...+.
T Consensus 83 ryLs---------------------l~dNkylRY-F-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~ 139 (311)
T KOG1446|consen 83 RYLS---------------------LHDNKYLRY-F-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN 139 (311)
T ss_pred EEEE---------------------eecCceEEE-c-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence 8874 466676642 3 6999999999999 88999999 9999999999887776665
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
.... ..++|+|.| ++|++.....|++||++.. .+-.++. +-....+.+.|||||++++.+...+.+++.|.-
T Consensus 140 ~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 140 LSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred cCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 3333 458999999 9999988889999999864 2333333 335678999999999999999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEEeee
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKFH 690 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f~ 690 (701)
+|......... -..+ .--...+|+||++++++| +||+|.+|++++|..+..+.+ ++.+.|+|....|.
T Consensus 218 ~G~~~~tfs~~-~~~~-----~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 218 DGTVKSTFSGY-PNAG-----NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred CCcEeeeEeec-cCCC-----CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 99755433333 1111 222678899999999998 789999999999999999887 66667777666555
Q ss_pred ec
Q 005342 691 SF 692 (701)
Q Consensus 691 ~~ 692 (701)
+.
T Consensus 292 sa 293 (311)
T KOG1446|consen 292 SA 293 (311)
T ss_pred ec
Confidence 44
No 66
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=219.93 Aligned_cols=280 Identities=15% Similarity=0.203 Sum_probs=218.0
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-----------EeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-----------TLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-----------~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
..|.. |.+++++||+++.++++.+++|.-|++.......... .+..+...|...+.+++.|+||+||+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 46666 9999999999999999999999999997433221011 01111126788999999999999999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET 534 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~ 534 (701)
+|+.|..|.||+. ++.+.+.. + .+|.+.|.+++|- -+.+++++ |+.|++|+++.
T Consensus 219 tgg~d~~v~Iw~~---------------------~t~ehv~~-~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 219 TGGRDRHVQIWDC---------------------DTLEHVKV-F-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ecCCCceEEEecC---------------------cccchhhc-c-cccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 9999999999955 45553332 2 5899999999999 45677777 99999999999
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
...+.++.+|++.|..+....-+ .+-+|..|+++++|++.. +..-.+.+|.+.+-|++|-. ...+++||++|.|.+|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 99999999999999999888888 788888999999999954 34456788999999999964 4578899999999999
Q ss_pred ECCCCeeeeeeeee-eccCCCC--CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC----ceeeeeee---eeEEEE
Q 005342 614 DAVGWKKLCSKFLH-SFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQVLL---ISHIMF 682 (701)
Q Consensus 614 d~~~g~~~~~~~l~-~~~~~~~--~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g----~~~~~l~~---i~~~~f 682 (701)
++...++++...+. .+...+. .+..+|++++..|...++|+| .+|.|++|.+..| +++..++. |++++|
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF 433 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEE
Confidence 99997766654443 1111110 011389999999999999997 8999999999887 34444443 899998
Q ss_pred EeeEEeeeecceEEEEeC
Q 005342 683 VQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 683 s~~~~~f~~~~~~~~~~~ 700 (701)
+ .+-+++++++|
T Consensus 434 ~------~sgk~ivagiG 445 (479)
T KOG0299|consen 434 S------NSGKRIVAGIG 445 (479)
T ss_pred c------cCCCEEEEecc
Confidence 7 44557777776
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=206.09 Aligned_cols=262 Identities=12% Similarity=0.108 Sum_probs=202.1
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCC-CeEEEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg-~~l~s~s~d~~v~iw 419 (701)
...|++.|-++..+..+... . .+.-.+.+..++|+++. ..+++++.||++++|
T Consensus 35 ~G~G~L~ile~~~~~gi~e~----------~----------------s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQEC----------Q----------------SYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ccCceEEEEecCCCCCeEEE----------E----------------eeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 56788888888655555441 0 01112227789999864 578889999999999
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
|+... .. .+. .++.|...|.++.|++-. +.++++|-|++|++|+. ..+.-+.
T Consensus 89 d~~~~---s~--Pi~-~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~---------------------~r~~Sv~ 141 (311)
T KOG0277|consen 89 DLTMP---SK--PIH-KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP---------------------NRPNSVQ 141 (311)
T ss_pred ccCCC---Cc--chh-HHHhhhhheEEeccccccceeEEeeccCCceEeecC---------------------CCCcceE
Confidence 97521 11 111 234689999999999854 45677788999999965 3333222
Q ss_pred ecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342 499 NDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 572 (701)
Q Consensus 499 ~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd 572 (701)
+ + .+|...|...+|+ ++.+++++ |+.+++||++.......+..|...|.++.|+.-. .+++|+.|+.|+.||
T Consensus 142 T-f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 142 T-F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred e-e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 1 3 5899999999999 88999999 9999999998654444488899999999999877 999999999999999
Q ss_pred CCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-C
Q 005342 573 PCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-Q 649 (701)
Q Consensus 573 ~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g 649 (701)
+++. .++.++.||.-.|..+.|||. ...|||+|.|-+++|||...+. ..++ ...+|+ .-|..+.||+- +
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----s~~e-~~~~Ht---EFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----SAIE-TVDHHT---EFVCGLDWSLFDP 291 (311)
T ss_pred hhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----hhhh-hhhccc---eEEeccccccccC
Confidence 9874 568889999999999999995 5689999999999999998753 2233 333676 78899999984 6
Q ss_pred CEEEE-EecCeEEEEEC
Q 005342 650 IHLLS-IHEGQIDVYEA 665 (701)
Q Consensus 650 ~~l~s-g~Dg~I~iwd~ 665 (701)
.++|+ |.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 67776 68999999985
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=236.83 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=190.0
Q ss_pred cc-CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEecccc---------------------------CCC------------
Q 005342 389 FN-DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLI---------------------------NEP------------ 427 (701)
Q Consensus 389 l~-~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~---------------------------~~~------------ 427 (701)
+. .|.+ ||++.||+||+|||+||.|+.|+||.+.+. ...
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 8999 999999999999999999999999998750 000
Q ss_pred ---CceeEee-----------cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342 428 ---SECRTLL-----------LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (701)
Q Consensus 428 ---~~~~~l~-----------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~ 493 (701)
..+..+. ..+.+|.+.|.++.||.++ +|++++.|.+|++|+ +..
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh---------------------~~~ 399 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWH---------------------PGR 399 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeec---------------------CCC
Confidence 0000000 0112899999999999876 689999999999994 455
Q ss_pred CeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcE
Q 005342 494 KLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSI 568 (701)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I 568 (701)
..++.. | .|...|+|++|+ ++++++|+ ||.|+||++...+.+.-.. -..-|+++++.||| ..++|+.+|.+
T Consensus 400 ~~CL~~-F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 400 KECLKV-F--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYC 475 (712)
T ss_pred cceeeE-E--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEE
Confidence 565543 3 499999999999 88999999 9999999997776665544 45789999999999 99999999999
Q ss_pred EEEeCCCCceEEeecC---------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 569 LVHCPCTKKTKAKLKG---------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 569 ~iwd~~~~~~~~~l~~---------h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
++|+....+....+.- |. .|+.+.|.|. ...++..+.|..|+|+|.+... .+..+.+.+.. .
T Consensus 476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-----lv~KfKG~~n~--~ 547 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-----LVHKFKGFRNT--S 547 (712)
T ss_pred EEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-----hhhhhcccccC--C
Confidence 9999887766544321 22 7999999984 4457778889999999997743 22224333321 4
Q ss_pred CeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 639 ~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
.-....|+.||++|+++ +|..|+||+...
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 45678999999999996 899999999843
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=8.1e-25 Score=202.76 Aligned_cols=258 Identities=14% Similarity=0.159 Sum_probs=211.4
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~ 466 (701)
+.+|.. |.+++|+-+|..|++|+.|+++.+|++. ..+... .....+|.+.|..++|+|. ...+++++.|..|+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e----~~r~~~-~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE----RDRFRK-ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEec----chhhhh-hhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 457888 9999999999999999999999999997 332211 2344578889999999875 56889999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
+||. .++++.... ...+.-..++|+ |+++++++ |..|.+.|.++.+.....+
T Consensus 91 ~wd~---------------------r~~k~~~~i---~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~- 145 (313)
T KOG1407|consen 91 IWDI---------------------RSGKCTARI---ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ- 145 (313)
T ss_pred EEEe---------------------ccCcEEEEe---eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-
Confidence 9965 444543321 122233356676 99999999 9999999999988877765
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
....+.-++|+.++ +++.....|.|.|.....-+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+.. ++|
T Consensus 146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC 223 (313)
T KOG1407|consen 146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LIC 223 (313)
T ss_pred ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhh
Confidence 55667888999777 666666779999999999999999999999999999999999999999999999999987 666
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
...+. -+. -+|..++||.||++||++ .|..|-|=++++|..+..++. -..++|.|-
T Consensus 224 ~R~is----Rld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 224 ERCIS----RLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred heeec----ccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence 66665 222 889999999999999996 899999999999999999887 667777664
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.7e-26 Score=218.78 Aligned_cols=277 Identities=13% Similarity=0.137 Sum_probs=215.2
Q ss_pred EEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
..|.+|.+.|. |++=+|. +.||.|+|||+..-.|+.. + ..|
T Consensus 60 ~~L~gHrdGV~--~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~----------f-------------------~AH 108 (433)
T KOG0268|consen 60 GSLDGHRDGVS--CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT----------F-------------------KAH 108 (433)
T ss_pred hhccccccccc--hhhcCcchhhhhhccccCceEEEEehhhhhhhhe----------e-------------------ecc
Confidence 45689999999 9999998 8999999999998888777 2 467
Q ss_pred Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
.+ |..++++. ..+++++.|.+|+.|.++ ......+. ....+..+.-+..+..+++||. .|.|||.+
T Consensus 109 ~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~----~~p~~til-----g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~ 175 (433)
T KOG0268|consen 109 EGLVRGICVTQ--TSFFTVGDDKTVKQWKID----GPPLHTIL-----GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQ 175 (433)
T ss_pred cCceeeEEecc--cceEEecCCcceeeeecc----CCcceeee-----ccccccccccccccccccccCc--eeeecccc
Confidence 77 88899987 789999999999999986 22112211 2455666766666777888876 48888763
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
.. ..++. +.. ....|.++.|+ -..|++|. |+.|.+||++++.+++.+. ....
T Consensus 176 R~---------------------~Pv~s-msw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mR 231 (433)
T KOG0268|consen 176 RD---------------------NPVSS-MSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMR 231 (433)
T ss_pred cC---------------------Cccce-eec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecc
Confidence 32 21111 111 23568888998 55677776 9999999999999888775 4555
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 548 ATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
-+.|+|+|.+ .+.+|++|..++.||++.. .++..+.+|.+.|.+++|||.|+-++|||.|.+|+||.+..+.- ..
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---Rd 308 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---RD 308 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---hh
Confidence 6889999977 8999999999999999874 56788899999999999999999999999999999999998742 11
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~ 673 (701)
+. ...-. ..|.+|.||.|.+++++| +|+.|++|.....+.+..
T Consensus 309 iY-htkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 309 IY-HTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred hh-hHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 11 00011 568999999999999997 899999998865554443
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7.5e-26 Score=222.00 Aligned_cols=263 Identities=14% Similarity=0.126 Sum_probs=216.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+..|.. |..+.|-++...|++|+.|..|++|++. .+++.. .-...+..++|+++.|.++++++++++.|+.+++
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~----~~k~~~-~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL----GEKSEL-ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcc----cchhhh-hhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 567888 9999999999999999999999999997 444222 2234566788999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCE-EEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
|++ .+.+++.. + .+|...|+++.|. ++. +++|+ |.+|+.||+....+.+++- .
T Consensus 246 Wnv---------------------d~~r~~~T-L-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~ 301 (459)
T KOG0288|consen 246 WNV---------------------DSLRLRHT-L-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-P 301 (459)
T ss_pred eec---------------------cchhhhhh-h-cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-c
Confidence 965 44554433 3 4799999999999 444 89999 9999999999988887765 4
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
.+.+..|+.++. .+++|..|++|+.||+++.........+. .|+++..+++|..|.+++.|.++.+.|+++.+.....
T Consensus 302 ~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 302 GSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred cccccceEecce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 555666776632 79999999999999999999999888774 8999999999999999999999999999996543322
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------eeEEEEEeeEE
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------ISHIMFVQIVV 687 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------i~~~~fs~~~~ 687 (701)
.-..+..+ ...+.+.|||++.|+++| .||.|+||++.+|++...+.. |++++|+|..-
T Consensus 380 sA~g~k~a-----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 380 SAEGFKCA-----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eccccccc-----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 22212222 458999999999999997 899999999999999888876 99999988543
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.4e-24 Score=214.50 Aligned_cols=294 Identities=13% Similarity=0.101 Sum_probs=223.7
Q ss_pred eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc-cC
Q 005342 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF-ND 391 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l-~~ 391 (701)
...+..|.-.+. |++++|+ +.+++|.-|++.+|...+.+ +..--.++.|-. +.+.- ++
T Consensus 135 ~~~~~~H~~s~~--~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i---~~~~ev~k~~~~---------~~k~~r~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVT--SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYI---IERDEVLKSHGN---------PLKESRKG 200 (479)
T ss_pred ceeeccccCcce--EEEeeccccceeecCCCcceeeeehhcCcccccc---cccchhhhhccC---------CCCccccc
Confidence 667788888899 9999999 89999999999999877552 000000110110 01111 37
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|.. +.+++.||||+|||+|+.|..|.||+.. +.+..+ .+.+|.+.|.+++|-.....+++++.|+.+++|++
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~----t~ehv~---~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCD----TLEHVK---VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCc----ccchhh---cccccccceeeeeeecCccceeeeecCCceEEEeh
Confidence 888 9999999999999999999999999998 444334 35679999999999988889999999999999976
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
+...++.. + .+|.+.|.++... +..+.+|+ |+++++|++.. .....|.++.+.
T Consensus 274 ---------------------~~~s~vet-l-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~s 329 (479)
T KOG0299|consen 274 ---------------------DQLSYVET-L-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS 329 (479)
T ss_pred ---------------------hHhHHHHH-H-hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCC
Confidence 22222222 2 3899999999887 66666666 99999999943 444567788889
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
+-|++|-.+..+++|+.+|.|.+|++.+.+++.+..- +..+|++++..|...++|+||.+|.|++|-+
T Consensus 330 idcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 330 IDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 9999998777899999999999999998888765532 2238999999999999999999999999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEE
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 664 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd 664 (701)
..|-. ...++..++.. +-|++++|+++|+.+++| ....+--|-
T Consensus 410 ~~g~r-~i~~l~~ls~~-----GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 410 EDGLR-AINLLYSLSLV-----GFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cCCcc-ccceeeecccc-----cEEEEEEEccCCCEEEEecccccccceee
Confidence 99832 12333323211 789999999999988875 343443443
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-23 Score=188.76 Aligned_cols=299 Identities=14% Similarity=0.195 Sum_probs=214.7
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc--
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC-- 388 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~-- 388 (701)
+++..++. ...|. .++|.|. +..++++|-....-..++. +|....-. +...|
T Consensus 24 ~~i~~l~d-sqair--av~fhp~g~lyavgsnskt~ric~yp~l~~~r~------------~hea~~~p----p~v~~kr 84 (350)
T KOG0641|consen 24 EAINILED-SQAIR--AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH------------AHEAAKQP----PSVLCKR 84 (350)
T ss_pred EEEEEecc-hhhee--eEEecCCCceEEeccCCceEEEEccccccCccc------------ccccccCC----CeEEeee
Confidence 44555554 44588 9999998 6667777654432221111 22110000 01122
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc--cCCCCceeEeecCCCCCCCCEEEEEEecC----CCEEEEEEC
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL--INEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQ 461 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~--~~~~~~~~~l~~~~~~~~~~v~~l~~spd----g~~l~s~s~ 461 (701)
-+.|.+ |.|.+|+|+|+++++|+.|++|++..++. ...+|.-..+ +.|.+.|..++|-.+ |..|++++.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~----nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF----NMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee----eecCCceeeeEEecCCCcCceEEEecCC
Confidence 346777 99999999999999999999999987752 1222322333 348999999999654 345555444
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEE-EecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALRGSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l-~~s~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
|..+||-. |...|+-... + .+|.+.|.++ .|+|-++++|+ |.+|++||++-..++.
T Consensus 161 -gdc~iy~t-------------------dc~~g~~~~a-~-sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 161 -GDCKIYIT-------------------DCGRGQGFHA-L-SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred -CcceEEEe-------------------ecCCCCccee-e-cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee
Confidence 44444422 4455553332 2 4788888776 34588999999 9999999999888887
Q ss_pred EecCC-------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 540 TFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 540 ~~~~~-------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
++... .+.|.++++.|.| ++++|-.|....+||++.+..++.+..|...|.++.|||...|+.+||.|..|+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 76421 3678999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECC
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 666 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~ 666 (701)
+-|+...- ....++- +.+.|. ..+..+.|+|..-.+++ +.|.++.+|-+.
T Consensus 299 ltdlqgdl-a~el~~~-vv~ehk---dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 299 LTDLQGDL-AHELPIM-VVAEHK---DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred Eeecccch-hhcCceE-EEEecc---CceEEEEecCccceeeeccCcceEEEeccC
Confidence 99998742 1112222 233454 78889999998766666 589999999763
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=209.01 Aligned_cols=277 Identities=13% Similarity=0.203 Sum_probs=220.4
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.||.+ ||.++-......+.+++.|.+.+||.++ .+.|.. .+.+|.+.|.++.|++.+..+++++.|++-.|
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E----sg~CL~---~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLE----SGACLA---TYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeec----ccccee---eecccccceeeEEeccccceEEEccCCcchHH
Confidence 568888 9999998888899999999999999999 898887 66789999999999999999999999999999
Q ss_pred Eec----CCCCc--cccccc-----------ccee-eEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CC
Q 005342 468 WKW----QSNKQ--SLEEEN-----------VNME-SQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GG 525 (701)
Q Consensus 468 wd~----~~~~~--~~g~~~-----------~~~~-i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg 525 (701)
|.. +.... +.++.. .... ..--|..+-. .+.. + .+|...|.+..|- |+.+++++ |.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-l-tgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-L-TGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-e-eccccceEehhhhcCcceeeeeeccc
Confidence 972 11111 111100 0000 0000111111 1111 2 4788999888887 88999999 99
Q ss_pred eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
+..+||.+++..++.+.||....+.++-+|.. ++++.+.|.+.++||.+.. ..+..|.||...|+++.|..|. .+++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceee
Confidence 99999999999999999999999999999999 9999999999999999853 4577899999999999998765 4889
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------ 676 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------ 676 (701)
||+|.+|+|||+++.+ .++.++... ++++.++.+..++.++.- ++..|++||+ +|..+..++.
T Consensus 374 gSDDrTvKvWdLrNMR----splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMR----SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGH 443 (481)
T ss_pred cCCCceEEEeeecccc----CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEec-CCCccccCCccccccc
Confidence 9999999999999853 444434333 789999999988888886 6778999999 6777777773
Q ss_pred ---eeEEEEEee
Q 005342 677 ---ISHIMFVQI 685 (701)
Q Consensus 677 ---i~~~~fs~~ 685 (701)
|++.+|+..
T Consensus 444 rRMV~c~AW~ee 455 (481)
T KOG0300|consen 444 RRMVTCCAWLEE 455 (481)
T ss_pred ceeeeeeecccc
Confidence 889999643
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1e-24 Score=219.28 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=205.4
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
|.+|.. |.++++.|.|..|++|+-|-.|++||+..+....+..+.-.| .....|.++.|++.|..|++.+.....++
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcceeE
Confidence 778888 999999999999999999999999999865544433221122 23567999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-EEEEe
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATF 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-~~~~~ 541 (701)
+|-.+... ..+ ....+.+.. ...++|...++|.+|+ .+.+++++ ||++++||+...+ ..+.+
T Consensus 241 ~DRdG~~~------~e~------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 241 LDRDGFEI------VEF------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EccCCcee------eee------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 98643321 100 011111110 0125899999999999 55677777 9999999987654 33333
Q ss_pred c-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce---EEeecCCCC--CeEEEEEecCCCEEEEEeCCCeE
Q 005342 542 A-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQN--RITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 542 ~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~---~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I 610 (701)
. +..-++++++|+||| .||+|+.||.|.+|+..+... ...-..|.. .|++++||+||++|+|-|.|+++
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 2 224467999999999 999999999999999755322 223345776 89999999999999999999999
Q ss_pred EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-------ecCeEEEEECCCCceeeeeee----eeE
Q 005342 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAPTLNHTSQVLL----ISH 679 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-------~Dg~I~iwd~~~g~~~~~l~~----i~~ 679 (701)
++||++..+ +++....+-.. ..+-+.++|||+.++|++| ..|++.+||..+.+.++.+.- |..
T Consensus 389 KvWDLrq~k----kpL~~~tgL~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 389 KVWDLRQFK----KPLNVRTGLPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred eeeeccccc----cchhhhcCCCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 999999853 44442211111 1556789999999999985 146799999999998888775 666
Q ss_pred EEEEe
Q 005342 680 IMFVQ 684 (701)
Q Consensus 680 ~~fs~ 684 (701)
+.|.|
T Consensus 463 ~~Whp 467 (641)
T KOG0772|consen 463 CLWHP 467 (641)
T ss_pred Eeecc
Confidence 67754
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.5e-25 Score=203.62 Aligned_cols=249 Identities=13% Similarity=0.163 Sum_probs=198.4
Q ss_pred CcccccccCccceeEEEe--ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342 307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD 376 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (701)
|++.|-++..+.-+..+. .-.+... .++|+++ +.||+++|||+.... .
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~Lf--dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------------~--- 95 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLF--DVAWSENHENQVIAASGDGSLRLFDLTMPS-----------------K--- 95 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeeccccee--EeeecCCCcceEEEEecCceEEEeccCCCC-----------------c---
Confidence 666666664333232222 1344566 8999998 899999999943211 1
Q ss_pred cccCCCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-C
Q 005342 377 ASSGDDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-G 453 (701)
Q Consensus 377 ~s~~D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g 453 (701)
+..+++.|.. |.++.|++ +++.+++++.|++|++|+.. ..+... ++.+|...|...+|+|. +
T Consensus 96 --------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~----r~~Sv~---Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 96 --------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN----RPNSVQ---TFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred --------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC----CCcceE---eecCCccEEEEEecCCCCC
Confidence 4567889999 99999997 46678888999999999987 333233 46689999999999994 6
Q ss_pred CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEE
Q 005342 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISI 529 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~i 529 (701)
+.++++|.|+.+++||+ +.. |+.+. + ..|...|.|+.|+ ...+++|+ |+.|+.
T Consensus 161 nlfas~Sgd~~l~lwdv-------------------r~~-gk~~~--i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDV-------------------RSP-GKFMS--I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred CeEEEccCCceEEEEEe-------------------cCC-CceeE--E-EeccceeEeecccccCCcEEEecCCCceEEE
Confidence 78999999999999997 323 44332 2 3688899999999 66788888 999999
Q ss_pred EeCCCCc-EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEE
Q 005342 530 FSLETFQ-TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSS 604 (701)
Q Consensus 530 wd~~~~~-~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~ 604 (701)
||++..+ ++..+.+|.-.|+.+.|||.. .||+++.|-+++|||... ...+.+...|+..|..+.||+ ++.++|++
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 9998754 677889999999999999998 999999999999999874 445667777999999999998 67799999
Q ss_pred eCCCeEEEEEC
Q 005342 605 GADAQLCVWDA 615 (701)
Q Consensus 605 s~D~~I~vwd~ 615 (701)
+.|..++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999985
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.6e-24 Score=210.73 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=204.7
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC---EEEEEECCCcEE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHK 466 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~ 466 (701)
-|++ |.++... ++.+++|+.||.+++|+.. |++.. ...+|.++|.+++|..... .+++++.|.+++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-----Gk~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-----GKSIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-----CceEE---EEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 6788 9998888 7799999999999999994 55554 3347999999888854333 599999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC----------
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---------- 533 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---------- 533 (701)
+|.++. .....-......+|...|.+++.. |.++++|+ |..|.+|+..
T Consensus 173 Lw~~~~-------------------~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 173 LWKWNV-------------------GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred EEEecC-------------------chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 997633 222211111224899999999987 99999999 9999999932
Q ss_pred ---------------CCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342 534 ---------------TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 534 ---------------~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg 598 (701)
++.++.++.||..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+. ..++++..+|..
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLS 312 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeeccccc
Confidence 1224557789999999999999559999999999999999999999888854 568999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEECCCCc-eeeeee
Q 005342 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYEAPTLN-HTSQVL 675 (701)
Q Consensus 599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd~~~g~-~~~~l~ 675 (701)
++|++||.|..|++||.+++. ......++ .||. +.|.++.|+|...+.+ ++ .|+++++||+++.+ .+..+.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~--gs~v~~s~-~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGD--GSVVSQSL-IGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred ceeeecCCCCceeecCCCCCC--CceeEEee-ecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 999999999999999999863 11222223 3666 8999999999876655 44 89999999999877 788887
Q ss_pred e----eeEEEEE
Q 005342 676 L----ISHIMFV 683 (701)
Q Consensus 676 ~----i~~~~fs 683 (701)
+ |-++.|+
T Consensus 387 ~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 387 GHNDKVLSVDWN 398 (423)
T ss_pred cCCceEEEEecc
Confidence 7 7777774
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=214.78 Aligned_cols=270 Identities=15% Similarity=0.171 Sum_probs=211.4
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
.+.|. +++|||. ...-.+.||+..+....+.+ ..-.. |.++
T Consensus 26 ~~~vs--sl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~-----------------------------srFk~~v~s~ 74 (487)
T KOG0310|consen 26 HNSVS--SLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTF-----------------------------SRFKDVVYSV 74 (487)
T ss_pred cCcce--eEecCCCCCCceEEecccEEEEEecchhhhhhhH-----------------------------HhhccceeEE
Confidence 34588 9999995 45567788887766555542 12234 8899
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
.|-.||++||+|+..|.|+++|.. +..... ....|..+|..+.|+|.++ .+++|+.|+.+++||+
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k----~r~iLR---~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~------- 140 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMK----SRVILR---QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL------- 140 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccc----cHHHHH---HHhhccCceeEEEecccCCeEEEecCCCceEEEEEc-------
Confidence 999999999999999999999965 322222 3456999999999999765 5566777788888865
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEEE
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI 552 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~ 552 (701)
.+... ..++ .+|++.|.|.+++ +.++++|+ ||.|++||++.. ..+.++. |..+|.++.
T Consensus 141 --------------s~a~v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 141 --------------STAYV-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred --------------CCcEE-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 44443 2224 5899999999999 66899999 999999999876 6677776 899999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
+-|.| .|++++. ..|++||+.+| +.+..+..|...|+|+++..++..|+|||-|+.|++||+.+.+.+......
T Consensus 204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--- 279 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--- 279 (487)
T ss_pred EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---
Confidence 99999 8888764 58999999855 555555559999999999999999999999999999998875543333333
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
++|.+++.+|+++.++.| .||.+-+=+...++
T Consensus 280 -------~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 280 -------GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred -------cceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 899999999999999998 88887766544433
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-24 Score=225.11 Aligned_cols=260 Identities=15% Similarity=0.158 Sum_probs=218.1
Q ss_pred hhhhhc--cccc----CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccc
Q 005342 297 VLVERN--PMLQ----DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSI 363 (701)
Q Consensus 297 ~l~~~~--~~la----~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~ 363 (701)
.|+.|. ..+| ..|.+|+..++........+...|. ++.|+++ ..+|+|.|||..+.+.++.+
T Consensus 181 nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vt--Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~--- 255 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVT--SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL--- 255 (484)
T ss_pred hHhhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceE--EEEECCCCCEEEEeecCCeEEEEehhhccccccc---
Confidence 456666 3455 6899999999998888777788899 9999999 78999999999988777762
Q ss_pred cCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC
Q 005342 364 LTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG 442 (701)
Q Consensus 364 ~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~ 442 (701)
.+ +|.. |.+++|. +..+.+|+.|+.|..+|+.. .+... . ...+|..
T Consensus 256 -------~~------------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~----~~~~~-~-~~~~H~q 302 (484)
T KOG0305|consen 256 -------RG------------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI----SQHVV-S-TLQGHRQ 302 (484)
T ss_pred -------cC------------------CcCceeEEEecc--CceEEEecCCCcEEEEEEec----chhhh-h-hhhcccc
Confidence 22 2677 9999998 67899999999999999973 22211 1 2457999
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEE
Q 005342 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHL 519 (701)
Q Consensus 443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l 519 (701)
.|..+.|++|+.++++|+.|+.+.|||.. ....... + ..|..+|..++|+ .+.|
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~---------------------~~~p~~~-~-~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGL---------------------SPEPKFT-F-TEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCC---------------------CccccEE-E-eccceeeeEeeeCCCccCce
Confidence 99999999999999999999999999652 2221111 2 3799999999999 8889
Q ss_pred EEEe---CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342 520 FSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA--FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 593 (701)
Q Consensus 520 ~s~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~--~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~ 593 (701)
|+|+ |+.|++||..+++.+..+. ....|+++.|++.. -++ .|..++.|.||+..+.+.+..+.||...|..++
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 9886 7999999999999998886 57789999999998 443 466677999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
++|||..+++|+.|.++++|++-..
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999874
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=234.75 Aligned_cols=247 Identities=15% Similarity=0.172 Sum_probs=212.9
Q ss_pred CcccccccCccceeEE-EeecCcceeeeEEEEc--cC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSL-IKQIMDWWVPYCINVM--PN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~-l~~h~~~v~~~~l~fs--pd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
++|++||..++..+.. +.+|.+.|+ +++|. .+ +.|.++++||..+|.|... +.
T Consensus 228 ~tl~~~~~~~~~~i~~~l~GH~g~V~--~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~----------l~------- 288 (537)
T KOG0274|consen 228 STLHLWDLNNGYLILTRLVGHFGGVW--GLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS----------LQ------- 288 (537)
T ss_pred ceeEEeecccceEEEeeccCCCCCce--eEEEecCCCEEEEEecCCcEEeEecCCCcEEEE----------ec-------
Confidence 7789999999999988 999999999 99998 44 8899999999999999988 33
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
+|.+ |.++...+ .++++|+.|.+|++|++. .+.+.. ...+|.+.|.++..+ +.+++
T Consensus 289 ------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~----n~~~l~---l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 289 ------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT----NGACLN---LLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred ------------CCCceEEEEEccC--ceEeeccCCceEEEEecc----CcceEE---EeccccccEEEEEec--CCEEE
Confidence 5555 66666544 488889999999999998 777766 334599999999998 88999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecC-CEEEEEe-CCeEEEEeCCCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG-SHLFSAS-GGKISIFSLETF 535 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~-~~l~s~s-dg~I~iwd~~~~ 535 (701)
+|+.||+|++||. .+++++.. + .+|..+|.++.+.+ +.+++|+ |++|++||+++.
T Consensus 346 sgs~d~~v~VW~~---------------------~~~~cl~s-l-~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 346 SGSYDGTVKVWDP---------------------RTGKCLKS-L-SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EEecCceEEEEEh---------------------hhceeeee-e-cCCcceEEEEEecCcceEEeeeeccceEeecCCch
Confidence 9999999999954 67777764 3 57999999998886 9999999 999999999999
Q ss_pred -cEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 536 -QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 536 -~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
+++.++.+|...+..+.+... ++++++.|++|++||..++++++++.+ |.+.|..+++. ...+++++.|+++++|
T Consensus 403 ~~c~~tl~~h~~~v~~l~~~~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 403 RKCIHTLQGHTSLVSSLLLRDN-FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred hhhhhhhcCCcccccccccccc-eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence 999999999888866655433 899999999999999999999999999 67889888876 4678889999999999
Q ss_pred ECCCCeee
Q 005342 614 DAVGWKKL 621 (701)
Q Consensus 614 d~~~g~~~ 621 (701)
|++++...
T Consensus 480 dl~~~~~~ 487 (537)
T KOG0274|consen 480 DLRSGTLI 487 (537)
T ss_pred ecccCchh
Confidence 99998643
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.3e-24 Score=221.49 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=226.6
Q ss_pred ccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
.-++.+.+.+|...|. .+++.++ |.|+++++|+-..+.-+.. | .+
T Consensus 3 ~Y~ls~~l~gH~~DVr--~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~-------------~--------------~~ 53 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVR--AVAVTDGVCIISGSRDGTVKVWAKKGKQYLET-------------H--------------AF 53 (745)
T ss_pred cceeEEEeccCccchh--eeEecCCeEEeecCCCCceeeeeccCcccccc-------------e--------------ec
Confidence 3456788999999998 7777777 8899999998765544332 1 23
Q ss_pred cCCCc-eEE-EEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 390 NDNNQ-SRE-STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 390 ~~h~~-V~~-l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.+|.+ |.. ++|-+ ++-.+++|+.|+.+.+|... ...... .+.+|...|.|+....++. +++||-|.+++
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~----~~~P~~---~LkgH~snVC~ls~~~~~~-~iSgSWD~Tak 125 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS----QAEPLY---TLKGHKSNVCSLSIGEDGT-LISGSWDSTAK 125 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecC----CCCchh---hhhccccceeeeecCCcCc-eEecccccceE
Confidence 46666 555 88875 55569999999999999987 333233 4568999999999888888 89999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
+|.. +++... + .+|...|++++.- .+.+++|+ |.+|++|.- ++.+++|.+|
T Consensus 126 vW~~-----------------------~~l~~~-l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 126 VWRI-----------------------GELVYS-L-QGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred Eecc-----------------------hhhhcc-c-CCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence 9933 333322 2 5899999988877 66889999 999999985 7889999999
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
...|+.+++-+++.+++++.||.|+.|++ +|+.+.++.||+..|.++...+++..++|+++|++++||+... +..
T Consensus 179 tD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----~~q 253 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----CVQ 253 (745)
T ss_pred hhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----eEE
Confidence 99999999999987889999999999998 7889999999999999999888888999999999999999873 455
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
.+. ... ..|+++.+-++|..++.|+||.|+||...
T Consensus 254 ~I~----lPt---tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 254 VIT----LPT---TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEe----cCc---cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 565 222 57999999999998888899999999876
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.9e-25 Score=206.40 Aligned_cols=285 Identities=13% Similarity=0.203 Sum_probs=216.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----------CCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----------PSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----------~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
+..|.. +.+.+|+|||.++|+|+.|.+|+|.|++.+-. +.+.+.+.-++-.|.+.|.++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 567888 99999999999999999999999999973311 111111111334688999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~ 533 (701)
++|+.|++|+++|+.... -.+-. +.+ ....+|.+++|+ |+++++|. ...+++||++
T Consensus 188 iS~srD~tvKlFDfsK~s------------------aKrA~-K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTS------------------AKRAF-KVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred EeccCCCeEEEEecccHH------------------HHHHH-HHh--hccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 999999999999873311 01111 112 234689999999 99999999 5899999999
Q ss_pred CCcEEEEe---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCC-CeEEEEEecCCCEEEEEeCC
Q 005342 534 TFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQN-RITCLAYSLSLNVLVSSGAD 607 (701)
Q Consensus 534 ~~~~~~~~---~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~-~V~~v~~spdg~~l~s~s~D 607 (701)
+.++...- .+|...|+++.+++.| +.++|+.||.|++||--+++++.++.. |.+ .|.+..|+.+|+|+.+.+.|
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 98875543 3578899999999999 999999999999999999999888764 654 78889999999999999999
Q ss_pred CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEE
Q 005342 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHI 680 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~ 680 (701)
..+++|.+.+|+.+....= .|.++-..--+...|+....+++.- ..+.+.-||.+++..+..++. +..+
T Consensus 327 S~vkLWEi~t~R~l~~YtG----Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTG----AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred ceeeeeeecCCceEEEEec----CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999999999875432111 1211111233566788888888873 567899999999887777665 6666
Q ss_pred EEEeeEEee------eecceEEEE
Q 005342 681 MFVQIVVKF------HSFKFFYVA 698 (701)
Q Consensus 681 ~fs~~~~~f------~~~~~~~~~ 698 (701)
.-||..-.| +..+|||=-
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EeCCCCCceeeecccceeeeeeec
Confidence 666665554 456677743
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.8e-24 Score=233.25 Aligned_cols=251 Identities=13% Similarity=0.189 Sum_probs=198.3
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC------C-----ceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP------S-----ECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~------~-----~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
...|.+ |+|+.|+|||++||+|++|+.|.||........ | +-++....+.+|...|..++|+|++.++
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 668999 999999999999999999999999998731100 1 1122222345799999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~ 533 (701)
++++.|++|.+||. .+...+.. + .+|.+.|-.+.|+ |+++++-+ |++|++|++.
T Consensus 145 vS~s~DnsViiwn~---------------------~tF~~~~v-l-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNA---------------------KTFELLKV-L-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred EEecccceEEEEcc---------------------ccceeeee-e-ecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 99999999999954 44444432 3 5899999999999 99999999 8999999988
Q ss_pred CCcEEEEecCCC------CCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-----
Q 005342 534 TFQTLATFANPP------PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----- 597 (701)
Q Consensus 534 ~~~~~~~~~~~~------~~i~~l~~spdg-~l~~gs~----dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd----- 597 (701)
+....+.+.++. ..+..+.||||| +|++... -..+.|.+..+.+.-..|-||.+++.+++|+|.
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 877777776552 346889999999 8877532 237899998888888899999999999999982
Q ss_pred CC------------EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEE
Q 005342 598 LN------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 664 (701)
Q Consensus 598 g~------------~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd 664 (701)
.+ .+|+||.|++|-||.....++. ..++.+. ...|..++|+|||..|++ +.||+|.+..
T Consensus 282 ~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~lf------~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIHNLF------NKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred cccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhhhhh------cCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 11 5789999999999999764322 2222121 277999999999987776 6899999999
Q ss_pred CCCCce
Q 005342 665 APTLNH 670 (701)
Q Consensus 665 ~~~g~~ 670 (701)
++..+.
T Consensus 354 Fee~El 359 (942)
T KOG0973|consen 354 FEEKEL 359 (942)
T ss_pred cchHHh
Confidence 976543
No 84
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.7e-23 Score=224.94 Aligned_cols=245 Identities=11% Similarity=0.082 Sum_probs=178.5
Q ss_pred EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342 410 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 488 (701)
Q Consensus 410 ~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~ 488 (701)
|+.++.+++|+... ..... ...+|.+.|.+++|+|+ +.+|++|+.||.|++||+...... .
T Consensus 50 GG~~gvI~L~~~~r----~~~v~---~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~----~------- 111 (568)
T PTZ00420 50 GGLIGAIRLENQMR----KPPVI---KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES----V------- 111 (568)
T ss_pred CCceeEEEeeecCC----CceEE---EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc----c-------
Confidence 56678899999762 22222 33579999999999997 789999999999999988542100 0
Q ss_pred eeCCCCeEEeecccCCCCCCeEEEEec--CCE-EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 489 YQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
. .....+.. + .+|...|.+++|+ +.. +++++ |+.|++||+++++.+..+. +...|.+++|+|+| ++++++
T Consensus 112 -~-~i~~p~~~-L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 112 -K-EIKDPQCI-L-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred -c-ccccceEE-e-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence 0 00011111 2 4788999999999 554 56778 9999999999998877776 56789999999999 999999
Q ss_pred CCCcEEEEeCCCCceEEeecCCCCCeEEE-----EEecCCCEEEEEeCCC----eEEEEECCC-CeeeeeeeeeeccCCC
Q 005342 564 DDSSILVHCPCTKKTKAKLKGHQNRITCL-----AYSLSLNVLVSSGADA----QLCVWDAVG-WKKLCSKFLHSFQTGL 633 (701)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~v-----~~spdg~~l~s~s~D~----~I~vwd~~~-g~~~~~~~l~~~~~~~ 633 (701)
.|+.|+|||+++++.+.++.+|.+.+.+. .|++++.+|++++.|+ +|+|||++. ++.+....+. .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----~~ 262 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----NA 262 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----CC
Confidence 99999999999999999999998865433 3458999999988774 799999996 3322222222 12
Q ss_pred CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee------eeEEEEEee
Q 005342 634 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------ISHIMFVQI 685 (701)
Q Consensus 634 ~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------i~~~~fs~~ 685 (701)
. +.+......++|.++++| .|++|++|++..+.. ..+.. +.+++|.|.
T Consensus 263 ~---~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 263 S---APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred c---cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 1 333334345568888887 899999999987743 22222 677888775
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1e-23 Score=196.00 Aligned_cols=262 Identities=14% Similarity=0.130 Sum_probs=207.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
|+||.. ++.+.|+.+|.+|.+|+.|.+..+|--. .|+..- +..+|.+.|+|+..+-+.+++++|+.|.++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~----nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL----NGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEec----CCceee---eecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 678999 9999999999999999999999999875 444333 45689999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC------CeEEEEeCC------
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE------ 533 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd------g~I~iwd~~------ 533 (701)
||+ ++|+.+.. + ....+|..+.|+ |++++...| +.|.++|++
T Consensus 79 WDv---------------------~tGk~la~-~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 79 WDV---------------------ETGKQLAT-W--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred EEc---------------------CCCcEEEE-e--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 955 66665543 2 356789999999 666666553 579999998
Q ss_pred -CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 534 -TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 534 -~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
...+...+..+.+.++.+-|+|-+ +|++|.+||.|.+||+++| +.+..-+.|...|+.+.++||..+++++|.|.+-
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc
Confidence 345677888888999999999999 9999999999999999997 4566667799999999999999999999999999
Q ss_pred EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECCCC------------ceeeeee
Q 005342 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL------------NHTSQVL 675 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~~g------------~~~~~l~ 675 (701)
++||+.+-+.+ +... .. .+|++.+++|...+++.| .-..|.-=+.+.| +.+..+.
T Consensus 215 kl~D~~tl~v~--Kty~---te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 215 KLVDVRTLEVL--KTYT---TE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred eeeeccceeeE--EEee---ec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 99999994322 2222 12 789999999988777763 2222333333333 2333444
Q ss_pred e----eeEEEEEeeEEeeee
Q 005342 676 L----ISHIMFVQIVVKFHS 691 (701)
Q Consensus 676 ~----i~~~~fs~~~~~f~~ 691 (701)
+ |++++|+|+..++-|
T Consensus 285 GHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred ccccCcceeEECCCCccccc
Confidence 4 999999998765543
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.4e-24 Score=200.95 Aligned_cols=282 Identities=14% Similarity=0.121 Sum_probs=205.8
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCc
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~ 464 (701)
.|++|.. |++++|+.||++||+++.|+.|++|++.+.... .++.+..++ -+..+.+.|+||-+-++... ...+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCE
Confidence 4889999 999999999999999999999999999854321 123332332 34567899999988665544 4678
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+++|.+..... |..... ..-||- ..+...|...+-++-.- +.+|++++ |..|.+|+++ |+.+..+
T Consensus 157 l~vyk~~K~~d--G~~~~~--~v~~D~-------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 157 LCVYKLVKKTD--GSGSHH--FVHIDN-------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred EEEEEeeeccc--CCCCcc--cccccc-------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 99997643321 111110 001110 01334566666666665 77899999 9999999997 9999998
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CC-----ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~-----~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
......-+..+.||+| ++++++..-.|.+|.+- .| ..+..++||.+.|...+|||+...++|.|.||+++|
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 8777778899999999 99999999999999863 22 235678999999999999999999999999999999
Q ss_pred EECCCCeee--eeeeeeeccC-CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-----eeEEEEEe
Q 005342 613 WDAVGWKKL--CSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQ 684 (701)
Q Consensus 613 wd~~~g~~~--~~~~l~~~~~-~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~ 684 (701)
||..-.-.. ..+.++..+. -|. ..+.-..++.+|.|+.||.+...+++++..++|+...+++. |++++|++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 998642110 1111221100 011 01333489999999999999888999999999988776665 99999998
Q ss_pred eE
Q 005342 685 IV 686 (701)
Q Consensus 685 ~~ 686 (701)
+.
T Consensus 384 ~g 385 (420)
T KOG2096|consen 384 DG 385 (420)
T ss_pred CC
Confidence 54
No 87
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=6.4e-23 Score=222.26 Aligned_cols=230 Identities=10% Similarity=0.072 Sum_probs=173.1
Q ss_pred cccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~ 464 (701)
.+.+|.. |.+++|+| ++++|++|+.|++|++|++.+...............+|...|.+++|+|++ ..|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3679999 99999999 889999999999999999973211100000001235689999999999986 68999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
|++||+ .++..... + .+|...|.+++|+ |..|++++ |+.|++||+++++.+..+
T Consensus 150 VrIWDl---------------------~tg~~~~~-l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 150 VNVWDV---------------------ERGKAVEV-I-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEC---------------------CCCeEEEE-E-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 999966 44443322 2 4688899999999 88999999 999999999999999888
Q ss_pred cCCCCC-eEEEEEcCCC-eEEEEe----CCCcEEEEeCCCCc-eEEeecCC-CCCeEEEEEecCCCEEEEEe-CCCeEEE
Q 005342 542 ANPPPI-ATYFILLPQD-LFAFGF----DDSSILVHCPCTKK-TKAKLKGH-QNRITCLAYSLSLNVLVSSG-ADAQLCV 612 (701)
Q Consensus 542 ~~~~~~-i~~l~~spdg-~l~~gs----~dg~I~iwd~~~~~-~~~~l~~h-~~~V~~v~~spdg~~l~s~s-~D~~I~v 612 (701)
.+|... ...+.|.+++ .+++++ .|+.|++||+++.. .+.....+ ...+....|+|++++|++++ .|+.|++
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 888664 4577889888 555443 47899999998754 34433333 34566678999999998887 5999999
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
||+.+++.... .. ..+. .++.+++|.|.
T Consensus 287 wdl~~~~~~~~--~~---~~s~---~~~~g~~~~pk 314 (493)
T PTZ00421 287 FELMNERLTFC--SS---YSSV---EPHKGLCMMPK 314 (493)
T ss_pred EEeeCCceEEE--ee---ccCC---CCCcceEeccc
Confidence 99999864332 11 1222 56788888885
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4e-24 Score=228.39 Aligned_cols=235 Identities=15% Similarity=0.211 Sum_probs=181.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc----------------cccc----------cccce--------
Q 005342 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEE----------ENVNM-------- 484 (701)
Q Consensus 439 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~----------------~~g~----------~~~~~-------- 484 (701)
.|.+.|+++.||+||+|||+||.||.|+||.+...+. ..+. .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6899999999999999999999999999999866221 0000 00000
Q ss_pred -eeEEeeCCCCeEEeec--ccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--
Q 005342 485 -ESQLYQPSSKLVMTND--IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-- 557 (701)
Q Consensus 485 -~i~~~d~~~~~~~~~~--~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-- 557 (701)
...+.+.....+..+. ...+|.+.|.+++|| +++|++++ |.+|++|++....++..|. |...|+|++|+|-.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 0001111111010000 114899999999999 99999999 9999999999999999998 99999999999977
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
++++|+-||+|+||++...+++.-.. -..-|++++|.|||++.+.|+.+|.+++|+...-+......+. +..+.....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccccC
Confidence 99999999999999998887766444 3478999999999999999999999999999986655555554 222221112
Q ss_pred CCeEEEEEcCCC--CEEEEEecCeEEEEECCCCceeeeeee
Q 005342 638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 638 ~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
..|+++.|.|.. +.|+++.|..|+|+|.++..++..+.|
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence 479999999864 378888999999999988888888887
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-23 Score=220.03 Aligned_cols=250 Identities=18% Similarity=0.207 Sum_probs=207.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
.+-+.|+ ..+.+|.|.. ..|++|+.. .+....+. ..+...|+++.|+++|.+|++|..+|.|.|||...
T Consensus 180 ~nlldWs-s~n~laValg-~~vylW~~~----s~~v~~l~---~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-- 248 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALG-QSVYLWSAS----SGSVTELC---SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-- 248 (484)
T ss_pred hhHhhcc-cCCeEEEEec-ceEEEEecC----CCceEEeE---ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--
Confidence 4457788 4456666655 689999987 56544433 12378999999999999999999999999997632
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI 552 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~ 552 (701)
.+.+.. +...|...|.+++|.+..+.+|+ |+.|..+|++..+.... +.+|...|+.+.
T Consensus 249 -------------------~k~~~~-~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 249 -------------------QKKTRT-LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK 308 (484)
T ss_pred -------------------cccccc-ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence 222211 32238999999999988899999 99999999998765444 888999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
|++|+ ++|+|+.|+.+.|||.....+...+..|...|.+++|+| ....||+|+ .|++|++||..+|.. +..
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----i~~ 383 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----IDS 383 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----ecc
Confidence 99999 999999999999999988889999999999999999999 677999865 599999999999853 333
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
+..+ +.|.++.|++..+-|++ | .++.|.||+..+.+.+..+.+ |-++++||+
T Consensus 384 vdtg-----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 384 VDTG-----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred cccC-----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 4444 77999999999887777 4 688999999999999999998 999999998
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.4e-23 Score=184.82 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=207.6
Q ss_pred ccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-------ceeEee-cCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 389 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-------ECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 389 l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-------~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
|.....|.+++|+|.|.+.+.|+..++.+|.......... +...+. .....|.+.|.|.+|||+|..+++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 4444449999999999999999999999987654321110 000001 12345889999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------CCEEEEEe--CCeEEEEeC
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSL 532 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------~~~l~s~s--dg~I~iwd~ 532 (701)
.|.+|++..++...+ + .+|.-+. + .-|.+.|..++|- |..+++++ |..|++-|.
T Consensus 109 ndk~ik~l~fn~dt~--------------~-~~g~dle--~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTC--------------N-ATGHDLE--F-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred CCceEEEEecccccc--------------c-ccCccee--e-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999999986633221 1 1122111 2 2588999999996 56778877 678899999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--C-----CCCeEEEEEecCCCEEEEE
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--H-----QNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h-----~~~V~~v~~spdg~~l~s~ 604 (701)
.+|+..+.+.+|.+.|.++ ++-+| .+++|+.|.+|+.||++-...+.++.. | .+.|.+++..|.|++|++|
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 9999999999999988765 45567 999999999999999998888877643 2 2579999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-------
Q 005342 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL------- 676 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~------- 676 (701)
-.|....+||++.|+.+. .+. .|+ ..|.++.|||...+++++ .|..|++-|+ .|.+.+.++.
T Consensus 250 ~~dssc~lydirg~r~iq--~f~----phs---adir~vrfsp~a~yllt~syd~~ikltdl-qgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQ--RFH----PHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDL-QGDLAHELPIMVVAEHK 319 (350)
T ss_pred cCCCceEEEEeeCCceee--eeC----CCc---cceeEEEeCCCceEEEEecccceEEEeec-ccchhhcCceEEEEecc
Confidence 999999999999986443 222 344 899999999999999996 8999999998 4655555554
Q ss_pred --eeEEEEEeeEEeeee
Q 005342 677 --ISHIMFVQIVVKFHS 691 (701)
Q Consensus 677 --i~~~~fs~~~~~f~~ 691 (701)
+-.+.|-|-.++|.+
T Consensus 320 dk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFIS 336 (350)
T ss_pred CceEEEEecCccceeee
Confidence 344555555555544
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.5e-24 Score=212.20 Aligned_cols=255 Identities=17% Similarity=0.261 Sum_probs=196.9
Q ss_pred CCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCC----ceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCC
Q 005342 391 DNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTA 463 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~----~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg 463 (701)
.|.+ |+.+.+-|... .+|+++..+.|.|||..+..... .+.. .+...+|...-.+++|++... .+++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P-dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRP-DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCC-ceEEEeecccccccccccccceeEeeccCCC
Confidence 6778 99999988654 56677888999999987433221 1111 112346777788899998654 688999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC--CCcE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQT 537 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~--~~~~ 537 (701)
.+++||+..... .+.....+....+|...|..++|+ ...+++++ |+.+.|||++ +.+.
T Consensus 201 ~i~lwdi~~~~~----------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 201 TICLWDINAESK----------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred cEEEEecccccc----------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 999999865421 111111111335899999999999 66788888 8999999999 5566
Q ss_pred EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEE
Q 005342 538 LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVW 613 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vw 613 (701)
.+...+|...+.|++|+|-+ .||+|+.|++|.+||+++. +.+.++.+|...|.+|.|||+ ...|||++.|+.+.||
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 77778899999999999988 9999999999999999984 568899999999999999995 5689999999999999
Q ss_pred ECCCC-eeee--------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 614 DAVGW-KKLC--------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 614 d~~~g-~~~~--------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
|+..- +... ...+- +-+||. ..|..+.|+|+..+++++ .|+.+.||++.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF-~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLF-IHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhhccCCcceeE-EecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99762 2111 11122 334665 999999999999988875 79999999985
No 92
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.7e-22 Score=201.39 Aligned_cols=313 Identities=14% Similarity=0.117 Sum_probs=234.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
..+++||..+-..++.+..-...|. |++||+. +.+..+.+||++.+......
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~--~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v--------------- 196 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVT--CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV--------------- 196 (626)
T ss_pred Ceeeecccccceeeeeeccccccce--eeeecccCCCceEEEecCCCccccchhhchhhhccCcc---------------
Confidence 6789999999999999987778899 9999987 88889999999887655441
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSG 453 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg 453 (701)
+.-+. |....|+|.+..++.....+.+..|+.. ++...+-.-.+ ......|.|++|.++|
T Consensus 197 --------------k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~----~~~l~k~~~~fek~ekk~Vl~v~F~eng 258 (626)
T KOG2106|consen 197 --------------KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR----GGSLVKRQGIFEKREKKFVLCVTFLENG 258 (626)
T ss_pred --------------eeccceEEEEEeccCCCcEEEEeCCceEEEEEcc----CCceEEEeeccccccceEEEEEEEcCCC
Confidence 11223 7789999987766655555999999987 44433322112 2234779999999999
Q ss_pred CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEe
Q 005342 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd 531 (701)
. +++|.++|.|.||+. .+.++... .. .|.+.|.+++.- +..|++|+ |..|..||
T Consensus 259 d-viTgDS~G~i~Iw~~---------------------~~~~~~k~-~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 259 D-VITGDSGGNILIWSK---------------------GTNRISKQ-VH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWD 314 (626)
T ss_pred C-EEeecCCceEEEEeC---------------------CCceEEeE-ee-ecCCceEEEEEecCccEeecCccceEEecc
Confidence 8 689999999999943 44444433 22 699999999998 66777788 99999998
Q ss_pred CCCCcEE------------E-----------------------------EecCCCCCeEEEEEcCCC-eEEEEeCCCcEE
Q 005342 532 LETFQTL------------A-----------------------------TFANPPPIATYFILLPQD-LFAFGFDDSSIL 569 (701)
Q Consensus 532 ~~~~~~~------------~-----------------------------~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~ 569 (701)
-. -+.+ + ...+|......++.+|+. ++++++.|+.++
T Consensus 315 ~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred cc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 32 1111 1 112566677889999999 999999999999
Q ss_pred EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
+|+ ..+++-+.. -..++.++.|+|.| .+|.|+..|...|.|.++...+. ++ .. . .+++.++|+|+|
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~---~d-~---~~ls~v~ysp~G 459 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IH---TD-N---EQLSVVRYSPDG 459 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EE---ec-C---CceEEEEEcCCC
Confidence 999 344443322 34678999999999 99999999999999999853222 22 12 2 889999999999
Q ss_pred CEEEEE-ecCeEEEEECCC-Cceeeee---ee--eeEEEEEeeEEeeeecc
Q 005342 650 IHLLSI-HEGQIDVYEAPT-LNHTSQV---LL--ISHIMFVQIVVKFHSFK 693 (701)
Q Consensus 650 ~~l~sg-~Dg~I~iwd~~~-g~~~~~l---~~--i~~~~fs~~~~~f~~~~ 693 (701)
.+||.| .|+.|+||-+.. |...... .+ |+++.||++...+.+..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 999997 899999999965 4433322 22 99999999877665544
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.4e-23 Score=229.67 Aligned_cols=284 Identities=15% Similarity=0.138 Sum_probs=214.5
Q ss_pred CCCc--eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCc-----eeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342 391 DNNQ--SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSE-----CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 461 (701)
Q Consensus 391 ~h~~--V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~-----~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~ 461 (701)
+|.. |.++..+|||..+|||+ .|+.++||+.+......+ ..........|.+.|.|+.|+|||++||+||.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 4554 89999999999999999 999999999763221111 01111122468999999999999999999999
Q ss_pred CCcEEEEecCCCCc--cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342 462 TATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 462 dg~i~vwd~~~~~~--~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
|+.|.||....... ..|...... +.+.-+.+.. + .+|...|.+++|+ +.++++++ |++|.+||..+++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~-----~vE~wk~~~~-l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAK-----NVESWKVVSI-L-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred cceEEEeeecccCCccccccccccc-----ccceeeEEEE-E-ecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence 99999998763100 111100000 2222233322 3 4799999999999 99999999 9999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC------CCeEEEEEecCCCEEEEEe----
Q 005342 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------NRITCLAYSLSLNVLVSSG---- 605 (701)
Q Consensus 537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~v~~spdg~~l~s~s---- 605 (701)
.+.++.+|.+.|-.+.|+|-| ++|+-+.|++|++|+..+....+.+.++- ..+..+.|||||++|++.-
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 999999999999999999999 99999999999999987776776665532 3678999999999999853
Q ss_pred CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CC------------EEEEE-ecCeEEEEECCC
Q 005342 606 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QI------------HLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 606 ~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~------------~l~sg-~Dg~I~iwd~~~ 667 (701)
.-.++.|.+..+++ ....+- ||. .++.++.|+|. .+ .+|+| .|++|.||....
T Consensus 243 ~~~~~~IieR~tWk--~~~~Lv----GH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 243 GKSTIAIIERGTWK--VDKDLV----GHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred CcceeEEEecCCce--eeeeee----cCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 34578888887653 122222 665 89999999983 11 34455 899999999987
Q ss_pred Cceeeeeee-----eeEEEEEeeEEeee
Q 005342 668 LNHTSQVLL-----ISHIMFVQIVVKFH 690 (701)
Q Consensus 668 g~~~~~l~~-----i~~~~fs~~~~~f~ 690 (701)
.+++-.+.. |..++|||+....+
T Consensus 314 ~RPl~vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 314 PRPLFVIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred CCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence 777655544 99999999876653
No 94
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.3e-22 Score=218.74 Aligned_cols=248 Identities=8% Similarity=-0.023 Sum_probs=178.0
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVN 418 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~i 418 (701)
+.++.+++|+..+...+.. +.+|.. |.+++|+|+ +.+||+|+.|++|++
T Consensus 51 G~~gvI~L~~~~r~~~v~~-----------------------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIK-----------------------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred CceeEEEeeecCCCceEEE-----------------------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 5678888888765433322 457888 999999997 789999999999999
Q ss_pred EeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342 419 LKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV 496 (701)
Q Consensus 419 w~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~ 496 (701)
|++.+.... ...........+|...|.+++|+|++..+ ++++.|+.|++||+ .+++.
T Consensus 102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl---------------------~tg~~ 160 (568)
T PTZ00420 102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI---------------------ENEKR 160 (568)
T ss_pred EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC---------------------CCCcE
Confidence 999732110 00000000234688999999999999865 68889999999966 44443
Q ss_pred EeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE-----EEEcCCC-eEEEEeCCC-
Q 005342 497 MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY-----FILLPQD-LFAFGFDDS- 566 (701)
Q Consensus 497 ~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~-----l~~spdg-~l~~gs~dg- 566 (701)
... + .|...|.+++|+ |.+|++++ |+.|++||+++++.+.++.+|.+.+.+ ..|++++ ++++++.|+
T Consensus 161 ~~~-i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 161 AFQ-I--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred EEE-E--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 221 2 245689999999 88999888 999999999999999999999876533 2346888 888877664
Q ss_pred ---cEEEEeCCC-CceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 567 ---SILVHCPCT-KKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 567 ---~I~iwd~~~-~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
.|+|||+++ ++++..+.. +.+.+......++|.++++|+.|++|++|++..+.. ..+. ..+. ..++
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~---~~l~---~~~s--~~p~ 309 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI---RKVN---EYKS--CSPF 309 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE---Eeec---cccc--CCCc
Confidence 799999995 556655443 333333333345688999999999999999988642 2232 1221 2778
Q ss_pred EEEEEcCCC
Q 005342 641 NHIQFHPDQ 649 (701)
Q Consensus 641 ~~v~~spdg 649 (701)
.+++|.|+.
T Consensus 310 ~g~~f~Pkr 318 (568)
T PTZ00420 310 RSFGFLPKQ 318 (568)
T ss_pred cceEEcccc
Confidence 899999974
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=199.02 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=227.8
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
++++.+.+|.+.|| .++-... +.|.+.+||.+++|.|+... .
T Consensus 139 ~lvre~~GHkDGiW--~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-----------------------------~ 187 (481)
T KOG0300|consen 139 RLVRELEGHKDGIW--HVAADSTQPICGTASADHTARIWSLESGACLATY-----------------------------T 187 (481)
T ss_pred eehhhhccccccee--eehhhcCCcceeecccccceeEEeeccccceeee-----------------------------c
Confidence 56677899999999 7665443 89999999999999998872 4
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEec------cccCCC------------------------CceeEee---cC
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKL------QLINEP------------------------SECRTLL---LP 436 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~------~~~~~~------------------------~~~~~l~---~~ 436 (701)
||.+ |+++.|+|.+.++++++.|++..||.. .....+ ..-..+. ..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 7778 999999999999999999999999972 211000 0001122 22
Q ss_pred CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342 437 DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (701)
Q Consensus 437 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s- 515 (701)
+.+|...|.+..|...|+.+++++.|.+..+||+ ++|.++. +..+|....+.++-.
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV---------------------Etge~v~--~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV---------------------ETGEVVN--ILTGHDSELTHCSTHP 324 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeee---------------------ccCceec--cccCcchhccccccCC
Confidence 3578899999999999999999999999999955 6677664 336888888877777
Q ss_pred -CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEE
Q 005342 516 -GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITC 591 (701)
Q Consensus 516 -~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~ 591 (701)
.+.+++.+ |.+.++||++.. ..+..|+||...|+++.|..+..+++|++|.+|++||+++. .++.+++ -.++++.
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NR 403 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANR 403 (481)
T ss_pred cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccce
Confidence 55666777 999999999754 46788999999999999998889999999999999999875 4566666 5678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC---CCEEEEEecCeEEEEECCCC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLSIHEGQIDVYEAPTL 668 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd---g~~l~sg~Dg~I~iwd~~~g 668 (701)
++.+..++.+|.--++..|++||+...+... .+ ++-..+|. ..|.|++|..+ .+++-+|.|..+.-|.+.+-
T Consensus 404 vavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-lP-rtsRqgHr---RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 404 VAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-LP-RTSRQGHR---RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEeecCCceEEeccCCceEEEEecCCCcccc-CC-cccccccc---eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999988899988889999999998754221 11 11223554 88999999865 34455578999999998653
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5.7e-23 Score=202.93 Aligned_cols=261 Identities=16% Similarity=0.140 Sum_probs=210.1
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw 419 (701)
+.|.++.++|..+++.+.. |+||.. |..+.|+|+...+++++.|..|++|
T Consensus 238 G~d~~av~~d~~s~q~l~~-----------------------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 238 GEDKTAVLFDKPSNQILAT-----------------------------LKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CCCCceEEEecchhhhhhh-----------------------------ccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 6788888888887776666 356777 9999999999999999999999999
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN 499 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~ 499 (701)
... ...+... ...|..+|+.+..+|.|.||++++.||+..+.|+ .+|..+..
T Consensus 289 s~~----~~s~~~~---~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~---------------------~~g~~lt~ 340 (506)
T KOG0289|consen 289 SVP----LSSEPTS---SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI---------------------SSGSQLTV 340 (506)
T ss_pred ccc----cccCccc---cccccccceeeeeccCCcEEEEecCCceEEEEEc---------------------cCCcEEEE
Confidence 987 3333331 2348999999999999999999999999998855 55554433
Q ss_pred cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC
Q 005342 500 DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 500 ~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~ 575 (701)
.......-.+++.+|+ |..+.+|. ||.+++||+..+..+..|.+|.++|..++|+.+| +++++++|+.|++||++.
T Consensus 341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 2212233468899999 77778888 9999999999999999999999999999999999 999999999999999998
Q ss_pred CceEEeecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 576 KKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 576 ~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.+..+++.-. ..+|.++.|.+.|.+|+.++.|=+|++++-.+..-.+...+. .|. +..+++.|....+++++
T Consensus 421 l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~----~~s---g~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 421 LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA----DHS---GLSTGVRFGEHAQYLAS 493 (506)
T ss_pred hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh----hcc---cccceeeecccceEEee
Confidence 8877777642 237999999999999999988888888876553322222222 443 67899999999999998
Q ss_pred E-ecCeEEEEEC
Q 005342 655 I-HEGQIDVYEA 665 (701)
Q Consensus 655 g-~Dg~I~iwd~ 665 (701)
+ .|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 5 7888887754
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=216.86 Aligned_cols=319 Identities=20% Similarity=0.210 Sum_probs=222.8
Q ss_pred CcccccccCcccee---EEEeecCcceeeeEEEEcc-C-----------------CCCCeEEEEeccCCcccccc-----
Q 005342 307 DKLKFPSMDKSRLL---SLIKQIMDWWVPYCINVMP-N-----------------ANNETISLKDFPTVSNLRYA----- 360 (701)
Q Consensus 307 ~~i~iwd~~~~~~~---~~l~~h~~~v~~~~l~fsp-d-----------------s~d~~i~lWd~~~~~~~~~~----- 360 (701)
+.+.+||+..-+.+ ...--|...|| .+.--| + +.|+||++||+..+..-..+
T Consensus 346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW--~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVGKCSSMLYHSACIW--DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred ceEEEEeccccccccceeeeeeccceee--eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 67788887543221 22334666666 655444 1 89999999999874432221
Q ss_pred ccccCCCCCCCCCCc---ccccC--CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee
Q 005342 361 SSILTDKPNQEGRPL---DASSG--DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL 434 (701)
Q Consensus 361 ~~~~~~~~~~~~~~~---~~s~~--D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~ 434 (701)
+.-+.+-.-..+... .++.+ |.. ... .-+... +++++.+|+|++||+|..-|+++++++.+....-
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka-~~s-~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~------ 495 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKA-LVS-TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC------ 495 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCccccc-chh-hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh------
Confidence 000000000000000 00000 111 111 223334 9999999999999999999999999997432211
Q ss_pred cCCCCCCCCEEEEEEecC---CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEE
Q 005342 435 LPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 511 (701)
Q Consensus 435 ~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 511 (701)
....|...|.|+.||.. .+.|++++.|.-|.|||+..+ |+ ++ ..+ .+|...|++
T Consensus 496 -~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------------y~-----l~-qtl-d~HSssITs 552 (1080)
T KOG1408|consen 496 -FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------------YD-----LV-QTL-DGHSSSITS 552 (1080)
T ss_pred -heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------------cc-----hh-hhh-cccccceeE
Confidence 23469999999999853 468899999999999976332 11 11 113 479999999
Q ss_pred EEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEecCC-----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 005342 512 FALR--G--SHLFSAS-GGKISIFSLETFQTLATFANP-----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 580 (701)
Q Consensus 512 l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~ 580 (701)
+.|- | ..+++++ |..|.+=-.+.......+..| ...++.+++.|.. ++++++.|..|+|||+.+++..+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 9998 3 4677777 877765433322222222222 4567999999999 99999999999999999999999
Q ss_pred eecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-Ee
Q 005342 581 KLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 656 (701)
Q Consensus 581 ~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~ 656 (701)
.|+| |.+....+...|.|.|+|+.+.|.++.++|..+|+.+ .. ..||. ..|+.+.|.+|-++|++ +.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv--A~----m~GHs---E~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV--AQ----MTGHS---EAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh--hh----hcCcc---hheeeeeecccchhheeecC
Confidence 9987 6678888999999999999999999999999998733 22 23776 89999999999999998 59
Q ss_pred cCeEEEEECCC
Q 005342 657 EGQIDVYEAPT 667 (701)
Q Consensus 657 Dg~I~iwd~~~ 667 (701)
||.|.||.+..
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999853
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=208.98 Aligned_cols=255 Identities=15% Similarity=0.173 Sum_probs=203.7
Q ss_pred cCCCceEEEEEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQSRESTSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~V~~l~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
+.|..|.+++|+|...+ +|+++. -.+.+|+.. +....+ .+......|.++.|-.||+.+++|...|.|+++
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~----~~~~~k---~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSV----TRSVRK---TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecc----hhhhhh---hHHhhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence 45666999999996543 444443 578899876 322222 112246789999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
|. .+...+. .+ ..|..++..+.|+ +..+++|+ |+.+++||+.+......+.+|
T Consensus 96 D~---------------------k~r~iLR-~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 96 DM---------------------KSRVILR-QL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred cc---------------------ccHHHHH-HH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 64 2222221 12 4799999999999 66788888 789999999988876688999
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...|.|.+++|.. .+++|+.||.|++||.++. ..+.++. |..+|.++.+-|.|..+|+++. +.|+|||+.+|.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q- 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ- 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce-
Confidence 9999999999987 8999999999999999987 6677776 8899999999999999999886 5899999997742
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
.+.....|+ ..|+|+.+..++..|++| -|+.+++||+.+-+.+..+.- |-+++.||+
T Consensus 230 ---ll~~~~~H~----KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 230 ---LLTSMFNHN----KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred ---ehhhhhccc----ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 222122233 899999999999999986 799999999988888887765 999999884
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=215.62 Aligned_cols=334 Identities=16% Similarity=0.183 Sum_probs=242.8
Q ss_pred CcccccccCcc-ce----eEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342 307 DKLKFPSMDKS-RL----LSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEG 372 (701)
Q Consensus 307 ~~i~iwd~~~~-~~----~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 372 (701)
+.+.||+...+ +. +...+...+.|. ++. +|. +.+|.+.+||+.+++.+.+ +
T Consensus 134 ~~l~vw~~s~~~~e~~l~~~~~~~~~~~It--al~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~----------f-- 198 (910)
T KOG1539|consen 134 NILFVWKTSSIQEELYLQSTFLKVEGDFIT--ALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT----------F-- 198 (910)
T ss_pred CcEEEEEeccccccccccceeeeccCCcee--eEe-cchhheeeEEEeecCCcEEEEEeccCcEEEE----------e--
Confidence 88889998773 11 233344444466 553 454 8899999999999998887 3
Q ss_pred CCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342 373 RPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (701)
Q Consensus 373 ~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp 451 (701)
+++.. |+++.=+|--..+|.|..+|+|.++++. .++... .+....++|++++|.-
T Consensus 199 -----------------~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK----~dkil~---sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 199 -----------------QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK----FDKILM---SFKQDWGRVTSLSFRT 254 (910)
T ss_pred -----------------cccccceeEeccCCcceEEEEeccCceEEEEEcc----cCcEEE---EEEccccceeEEEecc
Confidence 24445 8999999999999999999999999998 554433 2222358999999999
Q ss_pred CCCEEE-EEECCCcEEEEecCCCCc-------ccc----------cc-------ccceeeEEeeCCCCe--EEeecccCC
Q 005342 452 SGDFLV-ALTQTATHKLWKWQSNKQ-------SLE----------EE-------NVNMESQLYQPSSKL--VMTNDIAAD 504 (701)
Q Consensus 452 dg~~l~-s~s~dg~i~vwd~~~~~~-------~~g----------~~-------~~~~~i~~~d~~~~~--~~~~~~~~~ 504 (701)
||..+. +|+..|.+.+||++.... ..| .. ..+..+.++|...|- ++. .+.+
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR--~R~G 332 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR--SRGG 332 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee--eccC
Confidence 998655 455579999999987765 101 11 012224555544442 222 4457
Q ss_pred CCCCeEEEEec---CCEEEEEe-CCeEEEEeC------------------------------------------------
Q 005342 505 PKDSISCFALR---GSHLFSAS-GGKISIFSL------------------------------------------------ 532 (701)
Q Consensus 505 ~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~------------------------------------------------ 532 (701)
|..+..|+.|- |..+.+++ |++.+.+++
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 77777777776 66666666 766665543
Q ss_pred -----------------CCCcE-EEEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee---cCC
Q 005342 533 -----------------ETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGH 585 (701)
Q Consensus 533 -----------------~~~~~-~~~~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l---~~h 585 (701)
++... .+.+. .....+++++.++.| +.+.|+..|.|-+|++.+|-....+ ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 21111 01111 112567899999999 9999999999999999999888888 469
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee------------------------------------eeeeec
Q 005342 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------------------------------------KFLHSF 629 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~------------------------------------~~l~~~ 629 (701)
.++|+.++....++.++|++.+|.+++||.+....... +..+ .
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-~ 571 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-E 571 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-H
Confidence 99999999998899999999999999999987542210 0011 1
Q ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
..||. +.|+.++|||||++|+++ .|++|++||+.+|.++..+.. .+++.|||-
T Consensus 572 f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 572 FWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred hhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 12444 999999999999999995 899999999999999887765 788888874
No 100
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=207.79 Aligned_cols=283 Identities=16% Similarity=0.164 Sum_probs=213.3
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
..+.+||+.+|....++++........+-+..+. .....+.+|.+........ .
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q---------------~----- 77 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQ---------------Y----- 77 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhh---------------h-----
Confidence 4578999999999988887533222112222322 3334777787754433221 0
Q ss_pred CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~ 459 (701)
+ --++ |.+++-+|+|.+|+.|+-.|.+++|.+. +|.... ....|-..|+|+.|+-||.+|++|
T Consensus 78 -------~--v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels----sG~LL~---v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 78 -------I--VLPGPVHALASSNLGYFLLAGTISGNLYLWELS----SGILLN---VLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred -------c--ccccceeeeecCCCceEEEeecccCcEEEEEec----cccHHH---HHHhhccceeEEEEeCCCcEEEec
Confidence 0 1123 8899999999999999999999999998 776554 334689999999999999999999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCC-e--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEe
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-L--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~-~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd 531 (701)
|.||.|.+|.+.. +.+.... . .... + ..|.-+|+++.+. ..++++++ |.++++||
T Consensus 142 skDg~V~vW~l~~---------------lv~a~~~~~~~p~~~-f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 142 SKDGAVLVWLLTD---------------LVSADNDHSVKPLHI-F-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred CCCccEEEEEEEe---------------ecccccCCCccceee-e-ccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 9999999998722 2232222 1 1211 2 4789999999998 45899999 99999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----------------CceEEeecCCCC--CeEEE
Q 005342 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQN--RITCL 592 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----------------~~~~~~l~~h~~--~V~~v 592 (701)
+..+..+.++. .+..+.+++.+|.+ .+++|+.+|.|.+.++.. +..+..+.||.+ .|+|+
T Consensus 205 lS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 205 LSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred eccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 99999988887 67789999999999 999999999999987643 234667889988 99999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
+.+-||..|++|+.||+|+|||+.+.. .++++.. .. ++|+.+.+.|-.+-.
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~Q-----~iRtl~~-~k---gpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSKQ-----CIRTLQT-SK---GPVTNLQINPLERGI 334 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchHH-----HHHHHhh-hc---cccceeEeeccccce
Confidence 999999999999999999999999843 2332221 22 889999987654333
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.2e-22 Score=211.42 Aligned_cols=367 Identities=14% Similarity=0.124 Sum_probs=250.4
Q ss_pred ceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccCCcccccc-----ccccCCCCCCCCCCcccccCCC
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPTVSNLRYA-----SSILTDKPNQEGRPLDASSGDD 382 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~D~ 382 (701)
+.+..+.+|+++|. .++|+.- |.|..||||.+.-+...... ...+.+++.+..-..+--+
T Consensus 182 ~~v~el~GH~DWIr--sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~--- 256 (764)
T KOG1063|consen 182 ARVAELEGHTDWIR--SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR--- 256 (764)
T ss_pred eEEEEeeccchhhh--hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE---
Confidence 56778999999999 9999764 89999999998655422210 0111111111110000000
Q ss_pred CCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE--eecC-CCCCCCCEEEEEEecCCCEEEE
Q 005342 383 SNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT--LLLP-DNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 383 ~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~--l~~~-~~~~~~~v~~l~~spdg~~l~s 458 (701)
-.-...+.||.+ |.++.|+|.+..|.+++.|.++.+|...+. +| ++. +.+- ..+....-....|+|+++.+++
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~--tG-iWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN--TG-IWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc--cc-eEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 000112679999 999999999999999999999999998631 12 222 1221 1234566889999999999999
Q ss_pred EECCCcEEEEecCCCCc-----cccccccceeeEEeeCCCCeEEee-------cc--------------cCCCCCCeEEE
Q 005342 459 LTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTN-------DI--------------AADPKDSISCF 512 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~-------~~--------------~~~~~~~v~~l 512 (701)
-+..|..++|....... ..+.+...+.-..|++....+++. .+ ++.|...++|+
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 99999999998222111 333444455556677655444331 01 12366778888
Q ss_pred Eec--CCEEEEEe-CCeEEEEeCCC----------C---------------------------------cE----E----
Q 005342 513 ALR--GSHLFSAS-GGKISIFSLET----------F---------------------------------QT----L---- 538 (701)
Q Consensus 513 ~~s--~~~l~s~s-dg~I~iwd~~~----------~---------------------------------~~----~---- 538 (701)
++- ...+++|. ...+|+|+... + .. .
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 887 44566666 47778886531 0 00 0
Q ss_pred -------------------------EEecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEeecCCCC
Q 005342 539 -------------------------ATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQN 587 (701)
Q Consensus 539 -------------------------~~~~~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~l~~h~~ 587 (701)
+++.||...|++++.+|+| ++|+++... .|++|+..+-..++.+.+|.-
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 1222788899999999999 999988765 699999999888889999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
.|+.++|||||++|++.|.|.++.+|....+.... ..+.. ...|+ ..|+.+.|+|++.+++++ .|.+|+||...
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa~-~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFAC-LKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhcc-ccccc---eEEEEcccCcccceeEEecCCceEEEEecc
Confidence 99999999999999999999999999986643221 11221 22444 789999999999999995 89999999998
Q ss_pred CC--ceeeeeee------eeEEEEEeeEEeeeecceEEEEeC
Q 005342 667 TL--NHTSQVLL------ISHIMFVQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 667 ~g--~~~~~l~~------i~~~~fs~~~~~f~~~~~~~~~~~ 700 (701)
.+ +.+..+.. |+.++|-|... --+-..||+|
T Consensus 649 ~~~d~~i~~~a~~~~~~aVTAv~~~~~~~---~e~~~~vavG 687 (764)
T KOG1063|consen 649 DLRDKYISRFACLKFSLAVTAVAYLPVDH---NEKGDVVAVG 687 (764)
T ss_pred CchhhhhhhhchhccCCceeeEEeecccc---ccccceEEEE
Confidence 87 44444222 88888865432 2233355555
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.7e-24 Score=194.14 Aligned_cols=245 Identities=14% Similarity=0.167 Sum_probs=190.7
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHK 466 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~ 466 (701)
..|.+ |..+...--|+.||||+.|++|+|+.+.. .++ ..+-..+.+|.++|+.++|.. -|..|++++.||.|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~---n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRN---NGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcC---CCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 36777 88888888899999999999999999974 232 122235578999999999976 799999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCC---cEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETF---QTL 538 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~---~~~ 538 (701)
||.- .+|+.-.......|...|++++|- |-.|++++ ||.|.+.+.++. ...
T Consensus 84 iWke---------------------~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 84 IWKE---------------------ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred EEec---------------------CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 9965 333211111224788999999997 77789998 999999988654 223
Q ss_pred EEecCCCCCeEEEEEcCCC---------------eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCCeEEEEEecCC---
Q 005342 539 ATFANPPPIATYFILLPQD---------------LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSL--- 598 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg---------------~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~v~~spdg--- 598 (701)
+....|...+++++|.|.. .+++|+.|..|.||+..+++ ..++|.+|.+.|+.++|.|.-
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 3456788899999999862 39999999999999988753 445689999999999999953
Q ss_pred -CEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 599 -NVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 599 -~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
.+|||||.||++.||..... +.-....++. .. ..+.+++||+.|+.|+++ .|+.+.+|.-.
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~----f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE----FP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccccccc----CC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 48999999999999987732 1112223332 11 789999999999999986 89999999754
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=9.2e-23 Score=201.45 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=194.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.++...|....+.+|+.|..+.++|.. .++... .+.+|...|+.+.++|+...+++++.|..|+||....
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~----s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-- 292 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKP----SNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-- 292 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecc----hhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEeecccc--
Confidence 7778888887899999999999999987 665555 6678999999999999999999999999999996521
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIAT 549 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~ 549 (701)
..... ....|..+|+.+..+ |+|+++++ ||...+.|++++..+...... .-.++
T Consensus 293 -------------------~s~~~--~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 293 -------------------SSEPT--SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred -------------------ccCcc--ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 11111 224689999999998 99999999 899999999999987766532 34579
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
+.+|+||| .+.+|+.||.++|||+.++..+..|.||+++|..++|+-+|-|||++++|+.|++||++.-+......+.
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~- 430 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD- 430 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc-
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999985422222222
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
.. .++.++.|.+.|.+|+.+ .|=+|++++-
T Consensus 431 ----~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 431 ----EK---KEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred ----cc---ccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 11 579999999999999985 5656666653
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=7.1e-23 Score=206.04 Aligned_cols=293 Identities=12% Similarity=0.097 Sum_probs=211.7
Q ss_pred ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 388 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~ 388 (701)
++.+.-.+++|+..|. .+++-|. +-|.+|++||++.......- | .+.
T Consensus 156 P~shEi~l~hgtk~Vs--al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~---------f---------------r~l 209 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVS--ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS---------F---------------RQL 209 (641)
T ss_pred CccceEeccCCceEEE--EeeecCCCceeeeccccceEEEEecccccccchh---------h---------------hcc
Confidence 4556667889999999 9999888 89999999999865432210 1 011
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee---------cCCCCCCCCEEEEEEecCCC-EEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL---------LPDNSFGGRVVRLIYSHSGD-FLV 457 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~---------~~~~~~~~~v~~l~~spdg~-~l~ 457 (701)
...... |++++|+|.|..|++.+.....+++|-. +.+...+. ....+|...++|-+|+|+.+ .++
T Consensus 210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd----G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl 285 (641)
T KOG0772|consen 210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD----GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL 285 (641)
T ss_pred CcccccccceeeecCCCCeEEEEecCcceeEEccC----CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence 112233 8999999999999998888899999976 22221110 11247889999999999765 688
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~ 533 (701)
+++.||++++||++.. .+.. ++......+..-++++++|+ |..||+|. ||.|.+|+..
T Consensus 286 T~s~DgtlRiWdv~~~------------------k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNT------------------KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred EecCCCcEEEEecCCc------------------hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC
Confidence 9999999999988432 1221 22211223455688999999 88899988 9999999975
Q ss_pred CCc---EEEEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCC--CCeEEEEEecCCCEEEEE
Q 005342 534 TFQ---TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQ--NRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 534 ~~~---~~~~~~~~~~--~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~--~~V~~v~~spdg~~l~s~ 604 (701)
... ....-..|.. .|+|++||+|| +|++-+.|+++++||++.. +++.+..|-. -+-+.++|||+.++|++|
T Consensus 348 ~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 348 SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred CcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence 432 1222245654 89999999999 9999999999999999975 4555555532 356788999999999998
Q ss_pred eC------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEE-EC
Q 005342 605 GA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY-EA 665 (701)
Q Consensus 605 s~------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iw-d~ 665 (701)
+. .|++++||..+-+.+ .. +.-. . ..|..+.|+|.=+.|.+ +.||+++|| |.
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v--~k---i~i~-~---aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTV--YK---IDIS-T---ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccccCCCCCceEEEEeccceeeE--EE---ecCC-C---ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 64 578999999885422 22 2222 2 77899999998655555 489999885 44
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-21 Score=187.72 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=208.7
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCce
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS 395 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V 395 (701)
++...+.|. ++.|+++ +.|.+++|||..+|+..+++ ..+ +-++
T Consensus 10 f~~~~~~i~--sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti----------~sk------------------kyG~ 59 (311)
T KOG1446|consen 10 FRETNGKIN--SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI----------NSK------------------KYGV 59 (311)
T ss_pred cccCCCcee--EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe----------ecc------------------cccc
Confidence 344566788 9999999 78889999999999998883 211 1126
Q ss_pred EEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 396 RESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
..+.|......++.++. |.+|+.-++. ..++.+ .+.+|...|.++..+|-+..+++++.|++|++||++..
T Consensus 60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~----dNkylR---YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 60 DLACFTHHSNTVIHSSTKEDDTIRYLSLH----DNKYLR---YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred cEEEEecCCceEEEccCCCCCceEEEEee----cCceEE---EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence 66778666666666665 8899999998 666666 56789999999999999999999999999999988432
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEEEEec---CCC
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATFA---NPP 545 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~~~~~---~~~ 545 (701)
..+-. + +...-...+++ |-++|++. .+.|++||++.. .+-.++. +..
T Consensus 133 -------------------~cqg~---l---~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~ 187 (311)
T KOG1446|consen 133 -------------------KCQGL---L---NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE 187 (311)
T ss_pred -------------------CCceE---E---ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc
Confidence 12211 1 11223356777 77888887 459999999864 2344443 235
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe---EEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI---TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V---~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...+.+.||||| .++.++..+.+++.|.-+|..+.++.++...- -..+|+||++++.+|++||+|.+|++++|+++
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 678999999999 99999999999999999999999998876532 56789999999999999999999999998643
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
. . +.+.+. +++.++.|+|...++++ .+..+.+|=...
T Consensus 268 ~--~---~~~~~~---~~~~~~~fnP~~~mf~s-a~s~l~fw~p~~ 304 (311)
T KOG1446|consen 268 A--V---LRGPNG---GPVSCVRFNPRYAMFVS-ASSNLVFWLPDE 304 (311)
T ss_pred e--E---ecCCCC---CCccccccCCceeeeee-cCceEEEEeccc
Confidence 2 1 332233 88999999998766655 455677886643
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.8e-22 Score=190.96 Aligned_cols=259 Identities=13% Similarity=0.140 Sum_probs=199.0
Q ss_pred ecCcceeeeEEEEccC--------CCCCeEEEEeccCC-ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342 325 QIMDWWVPYCINVMPN--------ANNETISLKDFPTV-SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ- 394 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~- 394 (701)
...+.|. +++|||. |-|++||+|+++.. ... ......|..
T Consensus 25 pP~DsIS--~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------~ka~~~~~~P 74 (347)
T KOG0647|consen 25 PPEDSIS--ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------PKAQQSHDGP 74 (347)
T ss_pred Ccccchh--eeEeccccCceEEecccCCceEEEEEecCCccc----------------------------chhhhccCCC
Confidence 3456788 9999994 99999999999863 211 112346777
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~ 472 (701)
|-+++|+.||..+++|+.|+.+++||+. +++..++.. |..+|.++.|-+... .|++||-|++++.||.
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~----S~Q~~~v~~----Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~-- 144 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLA----SGQVSQVAA----HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT-- 144 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEcc----CCCeeeeee----cccceeEEEEecCCCcceeEecccccceeeccc--
Confidence 9999999999999999999999999998 777777655 999999999988766 8899999999999965
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE-Ee-cCCCCCeE
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA-TF-ANPPPIAT 549 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~-~~-~~~~~~i~ 549 (701)
.....+.. + .-...+.++..-..+++++. +..|.+|+++++.... .. ...+-.++
T Consensus 145 -------------------R~~~pv~t-~--~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 145 -------------------RSSNPVAT-L--QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTR 202 (347)
T ss_pred -------------------CCCCeeee-e--eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence 33332221 1 12345666555566677777 9999999997764322 22 12345689
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 550 YFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
|++..+|. ..|.|+-+|.+.|..+..+ +.-.+|+.|.. .|++++|+|....|+|++.||++.+||-..
T Consensus 203 ~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 203 CVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 99999999 7799999999999998876 44456666763 578899999888999999999999999887
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
..+ |.+-. -|. .+|++.+|+.+|.++|.
T Consensus 283 r~k-----Lk~s~-~~~---qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 283 RTK-----LKTSE-THP---QPITCCSFNRNGSIFAY 310 (347)
T ss_pred hhh-----hhccC-cCC---CccceeEecCCCCEEEE
Confidence 432 22111 222 89999999999999885
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.7e-21 Score=200.33 Aligned_cols=272 Identities=16% Similarity=0.150 Sum_probs=195.2
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw 419 (701)
+.|+.+++||+.+++.... +. .|..+..++|+|+|+.+ ++++.++.+++|
T Consensus 8 ~~d~~v~~~d~~t~~~~~~----------~~-------------------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~ 58 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT----------FP-------------------VGQRPRGITLSKDGKLLYVCASDSDTIQVI 58 (300)
T ss_pred cCCCEEEEEECCCCceEEE----------EE-------------------CCCCCCceEECCCCCEEEEEECCCCeEEEE
Confidence 4589999999998877665 22 22235679999999976 567788999999
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
|.. +++... .++ .+ ..+..++|+|+|+.+++++ .++.+.+||+ .++..+.
T Consensus 59 d~~----~~~~~~-~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~---------------------~~~~~~~ 109 (300)
T TIGR03866 59 DLA----TGEVIG-TLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDI---------------------ETRKVLA 109 (300)
T ss_pred ECC----CCcEEE-ecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEEC---------------------CCCeEEe
Confidence 997 444332 111 12 3356789999999776654 5899999966 3344332
Q ss_pred ecccCCCCCCeEEEEec--CCEEEEEe-C-CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEe
Q 005342 499 NDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHC 572 (701)
Q Consensus 499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd 572 (701)
. + .+...+.+++++ |.++++++ + ..+..||..+++...... ......+++|+|+| .++ ++..++.|++||
T Consensus 110 ~-~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 110 E-I--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred E-e--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 1 2 122346788888 88888877 5 467888998887766554 23345789999999 664 455689999999
Q ss_pred CCCCceEEeecCCC-----C--CeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342 573 PCTKKTKAKLKGHQ-----N--RITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644 (701)
Q Consensus 573 ~~~~~~~~~l~~h~-----~--~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~ 644 (701)
+.+++.+..+..+. . ....++|+|++++++. .+.++.|.+||+.+++... . +..+ ..+.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~---~~~~-----~~~~~~~ 255 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--Y---LLVG-----QRVWQLA 255 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--E---EEeC-----CCcceEE
Confidence 99998877664321 1 2346889999997544 4567789999999875432 1 1112 5688999
Q ss_pred EcCCCCEEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342 645 FHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ 684 (701)
Q Consensus 645 ~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~ 684 (701)
|+|+|++|+++ .++.|.+||+.+++++.+++. ..+++|+|
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 99999999874 589999999999999888876 77777654
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=5.5e-23 Score=205.93 Aligned_cols=276 Identities=15% Similarity=0.201 Sum_probs=217.0
Q ss_pred ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEE
Q 005342 325 QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRES 398 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l 398 (701)
.|+..|- .++.|.. +..|.|+|||+..-....- .+ .-.|++...-|+++
T Consensus 417 ~HGEvVc--AvtIS~~trhVyTgGkgcVKVWdis~pg~k~P-----------------vs------qLdcl~rdnyiRSc 471 (705)
T KOG0639|consen 417 AHGEVVC--AVTISNPTRHVYTGGKGCVKVWDISQPGNKSP-----------------VS------QLDCLNRDNYIRSC 471 (705)
T ss_pred ccCcEEE--EEEecCCcceeEecCCCeEEEeeccCCCCCCc-----------------cc------cccccCcccceeee
Confidence 3666666 6666655 8889999999964311110 01 23455443339999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g 478 (701)
..+|||+.|++|+.-.++.|||+.... ..+..........+.+++.+||.+..+++..||.|.|||+
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapT-----prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL-------- 538 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL-------- 538 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCC-----cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc--------
Confidence 999999999999999999999997311 1222222333467888999999999999999999999965
Q ss_pred ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcC
Q 005342 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 555 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp 555 (701)
.+..++.. + .+|...+.|+.++ |..|.+|+ |++|+.||+++++.+.... ..+.|.++...|
T Consensus 539 -------------hnq~~Vrq-f-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP 602 (705)
T KOG0639|consen 539 -------------HNQTLVRQ-F-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP 602 (705)
T ss_pred -------------ccceeeec-c-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC
Confidence 55555543 4 5899999999999 99999999 9999999999998777655 578899999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342 556 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (701)
Q Consensus 556 dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~ 634 (701)
.+ ++++|.+++.+.+..... .....+.-|.+.|.++.|.+-|+++++.+.|+.+..|...-|..+. + . ...
T Consensus 603 ~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF----q-s--kE~ 674 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF----Q-S--KES 674 (705)
T ss_pred CccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee----e-c--ccc
Confidence 99 999999999999988644 3445566699999999999999999999999999999999986332 2 1 111
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
+.|.++.+|.|.+++++| .|..-.||.+
T Consensus 675 ---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 ---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 889999999999999997 6777777765
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=4.8e-21 Score=192.53 Aligned_cols=332 Identities=13% Similarity=0.123 Sum_probs=240.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
..+.+||+..+......+.....|. ...|.|. ...+.+.+|+.+++...+.. ..
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~--~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~-------~~---------- 240 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVF--LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ-------GI---------- 240 (626)
T ss_pred cccchhhchhhhccCcceeccceEE--EEEeccCCCcEEEEeCCceEEEEEccCCceEEEe-------ec----------
Confidence 6678999999998888888888888 9999997 66789999999988876652 11
Q ss_pred CCCCCCCccccCCCc--eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 380 GDDSNDSSCFNDNNQ--SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~--V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
+.++.. |.+++|.++|. +++|.++|.|.||+.. +.+..+ ....|.+.|.++..-.+|. |+
T Consensus 241 ---------fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~----~~~~~k---~~~aH~ggv~~L~~lr~Gt-ll 302 (626)
T KOG2106|consen 241 ---------FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG----TNRISK---QVHAHDGGVFSLCMLRDGT-LL 302 (626)
T ss_pred ---------cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC----CceEEe---EeeecCCceEEEEEecCcc-Ee
Confidence 223333 99999999987 5789999999999986 443333 2226999999999999998 56
Q ss_pred EEECCCcEEEEecCCCCc-----c----------ccccccce-----eeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342 458 ALTQTATHKLWKWQSNKQ-----S----------LEEENVNM-----ESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~-----~----------~g~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-- 515 (701)
+|+.|+.|..||-.-... + .|+...-+ .+..=..+++.... ..+|......++..
T Consensus 303 SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~---v~gh~delwgla~hps 379 (626)
T KOG2106|consen 303 SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT---VQGHGDELWGLATHPS 379 (626)
T ss_pred ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE---EEecccceeeEEcCCC
Confidence 699999999998322222 0 11110000 00000112222111 13677888888888
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~ 594 (701)
.+.+++++ |+.+++|+ ..+.+.+.. ...+..|+.|+|.|.+|.|+..|...+.|.++...+..-.. ..++++++|
T Consensus 380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y 455 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY 455 (626)
T ss_pred hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEE
Confidence 66778888 99999999 455555544 45678999999999999999999999999999777665554 789999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeee
Q 005342 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 595 spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~ 673 (701)
+|+|.+||.||.|+.|+||.+..+...... +...+. .+|+.+.||+|++++.+ +.|-.|-.|.....+.+..
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r----~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSR----VGKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEE----eeeecC---ceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 999999999999999999999875322211 222333 88999999999999999 5788999995433333332
Q ss_pred eeeeeEEEE--EeeEEeeeec
Q 005342 674 VLLISHIMF--VQIVVKFHSF 692 (701)
Q Consensus 674 l~~i~~~~f--s~~~~~f~~~ 692 (701)
+..+.| +-|.+.|.-|
T Consensus 529 ---~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 529 ---VKDVKWATYTCTLGFEVF 546 (626)
T ss_pred ---ecceeeeeeEEEEEEEEe
Confidence 444444 3455555433
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.9e-23 Score=212.71 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=193.4
Q ss_pred EEEEc-CCCCeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 397 ESTSL-PDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 397 ~l~~s-pdg~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
.+..+ |++++|.|||.||.|++|++...... .+... .....|..-|..++...+|+.++++|.|-+|++|+....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~--asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~- 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI--ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD- 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchh--hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC-
Confidence 34443 67888999999999999998632211 11111 133568889999999999999999999999999976321
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--EEEEe-------
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLATF------- 541 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--~~~~~------- 541 (701)
...++.. + +.|...|.|+++- ...+|+|+ |+.|.+||++++. .+.++
T Consensus 106 ------------------~~~c~st-i-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 106 ------------------NTFCMST-I-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ------------------cchhHhh-h-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 1123321 3 5799999999994 67788899 9999999999873 33222
Q ss_pred -c-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 542 -A-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 542 -~-~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
. |+..+|++++..+.| .|++|+..+.+++||.++++.+..++||+..|..+..++||..++|+|.||+|++||+.-.
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 2 778899999999999 9999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
+ |...+. -|. ..|+++..+|+-.++++| .||.|..=|+.+.
T Consensus 246 r--Cl~T~~----vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 R--CLATYI----VHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred c--eeeeEE----ecc---CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4 333333 333 679999999999999997 8999999999874
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=4.3e-22 Score=206.97 Aligned_cols=290 Identities=13% Similarity=0.122 Sum_probs=215.0
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC-----------CCeEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-----------ADSAV 408 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-----------g~~l~ 408 (701)
..|..++|||+..-...... + .+--|.. ||.+.--|. ...++
T Consensus 343 YndhSlYvWDvrD~~kvgk~------------~--------------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~ 396 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKC------------S--------------SMLYHSACIWDVENLPCNVHSPTAACLPRGCFT 396 (1080)
T ss_pred EcCceEEEEeccccccccce------------e--------------eeeeccceeeeeccccccccCcccccCCcccee
Confidence 78999999999764432220 0 1235666 777766551 23489
Q ss_pred EEcCCCcEEEEeccccCCCCceeE--------eecCC-----------------------CCCCCCEEEEEEecCCCEEE
Q 005342 409 CAKSLEKSVNLKLQLINEPSECRT--------LLLPD-----------------------NSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 409 s~s~d~~v~iw~~~~~~~~~~~~~--------l~~~~-----------------------~~~~~~v~~l~~spdg~~l~ 457 (701)
+|+.|++|++|++..... ++.+. ++++. -+....+.+++.||+|++|+
T Consensus 397 TCSsD~TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA 475 (1080)
T KOG1408|consen 397 TCSSDGTIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA 475 (1080)
T ss_pred EecCCCcEEEeecccccc-cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence 999999999999973111 11100 00000 03356799999999999999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEe
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd 531 (701)
+|..-|.++||++ ..-..+. +...|+..|.|+.++ .+.|++++ |.-|++||
T Consensus 476 sGDr~GnlrVy~L---------------------q~l~~~~--~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDL---------------------QELEYTC--FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred ccCccCceEEEEe---------------------hhhhhhh--heecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 9999999999976 3333222 225799999999999 56789999 99999999
Q ss_pred CCC-CcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCC-----CCCeEEEEEecCCCEEE
Q 005342 532 LET-FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLV 602 (701)
Q Consensus 532 ~~~-~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~v~~spdg~~l~ 602 (701)
... ..+++++.+|...|+++.|.-.| .+++++.|..|..--.+...-...+..| ...+..++..|..++++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 854 45788999999999999999887 8888888987765322211111112111 24689999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----e
Q 005342 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----I 677 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i 677 (701)
+++.|..|+|||+.+|+.. +.++ |...+++....+...|.|.|+|++ .|.++.++|..+|+++.++.| |
T Consensus 613 t~cQDrnirif~i~sgKq~--k~FK----gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQV--KSFK----GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred EEecccceEEEecccccee--eeec----ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 9999999999999999743 2333 222344788899999999999997 899999999999999999999 9
Q ss_pred eEEEEEeeE
Q 005342 678 SHIMFVQIV 686 (701)
Q Consensus 678 ~~~~fs~~~ 686 (701)
+++.|+++=
T Consensus 687 TG~kF~nDC 695 (1080)
T KOG1408|consen 687 TGVKFLNDC 695 (1080)
T ss_pred eeeeecccc
Confidence 999998763
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.8e-22 Score=210.88 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=198.6
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
.|.. ...++|.|+|.+|++++.||.|++|+..... .....+. .+...|.+++.. +.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~----~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETID----ISGELVSSIACY--SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhh----ccCceeEEEeec--ccceEEeeccceEEEee
Confidence 5666 8899999999999999999999999986431 1111111 145667766654 55899999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
+... ..+.++. ...-++.+++++ |++++.|+ |-.|++.+..+......+.+|..
T Consensus 83 fps~------------------~~~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 83 FPSG------------------EEDTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred CCCC------------------Cccceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence 7332 2222332 245689999999 88999999 89999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+|.++.++|.+ ++|+.+.||.|++||+.++.+.+++.+- ...+..++|+|+|..++..+.|+.|++|+..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99999999999 9999999999999999999887776651 34577889999988788888899999999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-eeEEEEEe
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-ISHIMFVQ 684 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs~ 684 (701)
++... .+. .. .+. ..+..++|+|+|+|||+| -||.|.|||+++-+. +.... |...+|-|
T Consensus 220 we~~f--~Lr-~~-~~s---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 220 WELQF--KLR-DK-LSS---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEFKRAVCCEAWKP 280 (933)
T ss_pred ceehe--eec-cc-ccc---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccccceeEEEecCC
Confidence 87443 222 11 222 459999999999999997 799999999997433 22222 66666643
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.1e-23 Score=199.59 Aligned_cols=255 Identities=13% Similarity=0.144 Sum_probs=204.3
Q ss_pred ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
|.||.. |.+++=+|.. ..+++|+.||.|++||+. ...|.. .+..|.+.|..++++. ..+++++.|.+|+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls----qR~~~~---~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS----QRECIR---TFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehh----hhhhhh---eeecccCceeeEEecc--cceEEecCCccee
Confidence 679999 9999999987 789999999999999997 444444 4456899999999987 5689999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~ 544 (701)
.|.++.. .... + ...+.+..+..+ ++.+++++ ..|.|||.+...++..+.-.
T Consensus 133 ~wk~~~~----------------------p~~t-i--lg~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 133 QWKIDGP----------------------PLHT-I--LGKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred eeeccCC----------------------ccee-e--eccccccccccccccccccccC-ceeeecccccCCccceeecC
Confidence 9976321 0000 1 113345555555 44555554 46999999888899999877
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
...|.++.|+|.. .|+++..|+.|.+||++++.+++... -...-+.++|+|.+--+++|++|..++.+|++.-
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l---- 261 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL---- 261 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhh----
Confidence 8889999999998 88888899999999999999888765 3455688999998888899999999999999983
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-----eeEEEEEeeEE
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVV 687 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~ 687 (701)
..++. +-.+|. +.|.+|.|||.|+-+++| .|.+|+||.+..+.....+.. |.++.||.+..
T Consensus 262 ~~p~~-v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 262 SRPLN-VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred cccch-hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 35555 444666 999999999999999996 799999999988876555544 89999986654
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.3e-21 Score=185.34 Aligned_cols=255 Identities=14% Similarity=0.098 Sum_probs=191.8
Q ss_pred eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
|.+++||| ...+++.||.|++|++|+++. .+.... + ....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~---~g~~~~-k-a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL--- 101 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQN---SGQLVP-K-AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL--- 101 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEec---CCcccc-h-hhhccCCCeEEEEEccCCceEEeeccCCceEEEEc---
Confidence 99999999 555666999999999999984 232221 1 12358899999999999999999999999999955
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
.+++..+. ..|..+|.++.|- . ..|++|+ |++|+.||++...++.++. .+..+
T Consensus 102 ------------------~S~Q~~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 102 ------------------ASGQVSQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred ------------------cCCCeeee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 66665542 4699999999998 2 3689999 9999999999988888887 45566
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEee-c-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l-~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
+++..-.. .++++..+..|.+|+++++...... . .-+-.+.+++..+|..-.+.||-+|.+-|..+..+.+.....+
T Consensus 160 Ya~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 160 YAADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred eehhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 66544322 7888999999999999876433211 1 1223578999889888779999999999999988643222333
Q ss_pred eeccCCC----CCC-CCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee----eeEEEEE
Q 005342 627 HSFQTGL----VPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL----ISHIMFV 683 (701)
Q Consensus 627 ~~~~~~~----~~~-~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs 683 (701)
+ .|. ... -..|++|+|+|....|++ |+||++.+||-..-..+++.+. |+..+|+
T Consensus 239 k---CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 239 K---CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred E---EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 2 122 100 146889999998777887 7999999999977766666554 7777665
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-22 Score=208.66 Aligned_cols=276 Identities=15% Similarity=0.164 Sum_probs=211.5
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw 419 (701)
+.||.|++|++........ .+. ...+..|.. |+.++...+|+.|+++|.|.+|++|
T Consensus 44 GRDg~i~~W~~~~d~~~~s-------------~~~----------~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPS-------------TPY----------IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred CCCceEEEeccccccCCcc-------------cch----------hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence 6799999999865543211 001 112567888 9999999999999999999999999
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEE-ecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
+..... .-|.. ....|.+.|.|+++ -++...+++||-|+.|.+||++++.. ..+.+ .+....
T Consensus 101 ~~~~~~--~~c~s---tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~---~l~~s---------~n~~t~ 163 (735)
T KOG0308|consen 101 NAHKDN--TFCMS---TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA---TLVAS---------FNNVTV 163 (735)
T ss_pred ecccCc--chhHh---hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch---hhhhh---------cccccc
Confidence 997321 12333 34569999999999 78888999999999999999966521 11111 011111
Q ss_pred ecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 005342 499 NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 574 (701)
Q Consensus 499 ~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~ 574 (701)
..+..++...|++++.+ |..+++|+ .+.+++||.++++.+..+.||...|..+..++|| .+++++.||+|++||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 11323788999999999 77888888 8999999999999999999999999999999999 99999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EE
Q 005342 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LL 653 (701)
Q Consensus 575 ~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~ 653 (701)
..+++.++..|+..|+++..+|+-..+++|+.||.|+.=|+++... ...+. ... .+|..+..+.+.+- -+
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlic----k~d---aPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLIC----KED---APVLKLHLHEHDNSVWV 314 (735)
T ss_pred ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEee----cCC---CchhhhhhccccCCcee
Confidence 9999999999999999999999999999999999999999998421 11111 111 45556655543332 33
Q ss_pred EEecCeEEEEEC
Q 005342 654 SIHEGQIDVYEA 665 (701)
Q Consensus 654 sg~Dg~I~iwd~ 665 (701)
+..|+.|+-|..
T Consensus 315 tTtds~I~rW~~ 326 (735)
T KOG0308|consen 315 TTTDSSIKRWKL 326 (735)
T ss_pred eeccccceecCC
Confidence 347777777765
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.8e-22 Score=200.91 Aligned_cols=269 Identities=12% Similarity=0.087 Sum_probs=207.4
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
-.|.. |.++++|...+.+.||+. |.|+|||+........... ++.-...+.|.++..+|||+.|++|+.-.++.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 37888 999999999999999998 8999999974321111111 1112246789999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
|+... +-.+... + .........++.+ .+..+++. ||.|.|||+.+...++.|++|.
T Consensus 493 DLAap-------------------Tprikae-l-tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 493 DLAAP-------------------TPRIKAE-L-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred eccCC-------------------Ccchhhh-c-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 88443 2221110 1 1222355667777 44444444 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
..+.||.+++|| .|.+|+-|.+|+-||++++..+.... ..+.|.++-.+|++.+|+.|-..+.+-|-.....++.
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky--- 627 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY--- 627 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---
Confidence 999999999999 99999999999999999987766543 4567999999999999999999999999888775422
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee---eeEEEEEeeEEeeeecceEEEEeC
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~~~f~~~~~~~~~~~ 700 (701)
.+. -|. +.|.++.|++.|+++++ |.|+-+..|...-|..+-..+. |.+...| +.-.||.+|
T Consensus 628 qlh----lhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS--------~ddkyIVTG 692 (705)
T KOG0639|consen 628 QLH----LHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS--------FDDKYIVTG 692 (705)
T ss_pred eec----ccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec--------cCceEEEec
Confidence 222 232 88999999999999998 7999999999988887766655 5444433 555778777
Q ss_pred C
Q 005342 701 A 701 (701)
Q Consensus 701 ~ 701 (701)
+
T Consensus 693 S 693 (705)
T KOG0639|consen 693 S 693 (705)
T ss_pred C
Confidence 4
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=196.03 Aligned_cols=281 Identities=15% Similarity=0.165 Sum_probs=213.1
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC-CCcEEEEec
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS-LEKSVNLKL 421 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~-d~~v~iw~~ 421 (701)
..++.+||+.+|..... +++.. ++.+|.- -+. ++.+++++.. ...+.+|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~----------ykg~~-------------~a~~~sl---~~l--~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQ----------YKGSY-------------LAQAASL---TAL--NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred CcceeEEecCCCceeEE----------ecCcc-------------cccchhh---hhh--chhheeeecccCcccccccc
Confidence 35699999999987666 33320 1111111 011 1256666543 357889998
Q ss_pred cccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecc
Q 005342 422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI 501 (701)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~ 501 (701)
....... ..+ --+++|.+++-+|+|.+++.|+..|.+++|. ..+|.++.. +
T Consensus 69 ~k~~~~~--q~~-----v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWe---------------------lssG~LL~v-~ 119 (476)
T KOG0646|consen 69 LKKDQVV--QYI-----VLPGPVHALASSNLGYFLLAGTISGNLYLWE---------------------LSSGILLNV-L 119 (476)
T ss_pred Cchhhhh--hhc-----ccccceeeeecCCCceEEEeecccCcEEEEE---------------------eccccHHHH-H
Confidence 6311111 111 1368899999999999999988999999994 477776543 3
Q ss_pred cCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---------CCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCC
Q 005342 502 AADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDS 566 (701)
Q Consensus 502 ~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---------~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg 566 (701)
..|-..|+|+.|+ |.++++|+ ||.|.+|++- +-++.+.+..|.-+|+.+...+.| .+++++.|.
T Consensus 120 -~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 120 -SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred -HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 5799999999999 99999999 9999999863 335778889999999999999886 999999999
Q ss_pred cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee-----------eeeeeeeccCCCCC
Q 005342 567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-----------CSKFLHSFQTGLVP 635 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~-----------~~~~l~~~~~~~~~ 635 (701)
++++||+..+.++.++. -...+.+++.+|-++.++.|+.+|.|.+.++...... ....+. ...||.
T Consensus 199 t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-~~~Gh~- 275 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-VLVGHE- 275 (476)
T ss_pred eEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee-eecccc-
Confidence 99999999999988876 4567999999999999999999999999988653211 112233 223454
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee---e-eeEEEEEe
Q 005342 636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL---L-ISHIMFVQ 684 (701)
Q Consensus 636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~---~-i~~~~fs~ 684 (701)
.+..|+|++.+-||..|++| .||.++|||+.+.++++++. | |+.+.+.|
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 11389999999999999998 79999999999999998887 3 88888843
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=194.65 Aligned_cols=276 Identities=14% Similarity=0.192 Sum_probs=212.3
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
.+.|+ ++.|+|. +-|++++||.+......... .+.-... |.+.
T Consensus 213 ~~~I~--sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq---------------------------S~~l~~fPi~~a 263 (514)
T KOG2055|consen 213 HGGIT--SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ---------------------------SIHLEKFPIQKA 263 (514)
T ss_pred cCCce--EEEecCCCceEEEecCCCcEEEEEecCccChhhe---------------------------eeeeccCcccee
Confidence 44688 9999999 99999999988765443320 0011112 7788
Q ss_pred EEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 399 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 399 ~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
.|+|+|. .+++++.....+.||+. +.+..++..+.......+.....||++++|+..+..|.|.+.
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL--------- 330 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL--------- 330 (514)
T ss_pred eecCCCceEEEecccceEEEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee---------
Confidence 9999999 89999999999999998 666666554443334567788899999999999999999988
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe--EEEE
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA--TYFI 552 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i--~~l~ 552 (701)
...+++++.. + .-.+.|.+++|+ ++.|++++ +|.|++||++...+++++.. .+.| ++++
T Consensus 331 ------------hakT~eli~s-~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~ 394 (514)
T KOG2055|consen 331 ------------HAKTKELITS-F--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLC 394 (514)
T ss_pred ------------hhhhhhhhhe-e--eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeee
Confidence 4456664432 2 246789999998 77666665 99999999999999999873 3333 7889
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCC------CceEEeecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeeeee
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~--D~~I~vwd~~~g~~~~~ 623 (701)
.+++| ++|+|+..|.|-|||..+ .+++..+..-...|+++.|+||++.||-+|. +..+++-++.+-
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~----- 469 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC----- 469 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-----
Confidence 99999 999999999999999654 4566666666778999999999998876664 778999999983
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
..+.+++.... .-+.|+|++|||.|-++|.| .+|.+.+|.+.
T Consensus 470 TVFsNfP~~n~-~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 TVFSNFPTSNT-KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeccCCCCCC-cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 22333332221 12679999999999999999 78999999874
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.7e-21 Score=180.83 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=193.2
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK 466 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~ 466 (701)
.+|.+ |.++.|.+-|+.+|+|+.|++++|||..+. ++. +..+.....|.+.|..+.|.+- |+.+++++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~--s~~-W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD--SGT-WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCC--CCc-eEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 47888 999999999999999999999999997532 222 3333233468999999999763 88999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc----
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ---- 536 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~---- 536 (701)
||.-..... +..+.+ .....+ ....+.|+++.|. |-.+++++ ||.++||+....-
T Consensus 87 iWEE~~~~~--------------~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 87 IWEEQEKSE--------------EAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eeeeccccc--------------ccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 996421110 111112 111112 2567789999998 88899999 9999999865432
Q ss_pred --EEEEec-------CCCCCeEEEEEcCCC----eEEEEeCC-----CcEEEEeCCCC----ceEEeecCCCCCeEEEEE
Q 005342 537 --TLATFA-------NPPPIATYFILLPQD----LFAFGFDD-----SSILVHCPCTK----KTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 537 --~~~~~~-------~~~~~i~~l~~spdg----~l~~gs~d-----g~I~iwd~~~~----~~~~~l~~h~~~V~~v~~ 594 (701)
..+.+. .+..+..|+.|+|.. +||+|+.+ +.++||....+ ..+.++.+|..+|++++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 222232 345567899999865 88888877 47888875543 345678899999999999
Q ss_pred ecC-C---CEEEEEeCCCeEEEEECCCCe---------------eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-
Q 005342 595 SLS-L---NVLVSSGADAQLCVWDAVGWK---------------KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 654 (701)
Q Consensus 595 spd-g---~~l~s~s~D~~I~vwd~~~g~---------------~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s- 654 (701)
.|+ | .+||+++.|| |+||+++.-. ....+.+..+ .+|. +.|..+.|+-.|..|++
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~---~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHN---GEVWRVRWNMTGTILSST 306 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCC---CceEEEEEeeeeeEEeec
Confidence 995 3 4789999999 9999998410 0112223312 3443 89999999999999998
Q ss_pred EecCeEEEEECC---CCceeeeeee---eeEEEEEe
Q 005342 655 IHEGQIDVYEAP---TLNHTSQVLL---ISHIMFVQ 684 (701)
Q Consensus 655 g~Dg~I~iwd~~---~g~~~~~l~~---i~~~~fs~ 684 (701)
|+||.|++|... ..++...+.. ++...|++
T Consensus 307 GdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 307 GDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred CCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 699999999863 2344444444 55555543
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=9.2e-22 Score=196.37 Aligned_cols=251 Identities=11% Similarity=0.111 Sum_probs=194.7
Q ss_pred ecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 325 QIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
.|.+.|. .+++.|. +..+.+.|||..+...... ..+... +.-.|.||.. =
T Consensus 122 ~h~gEVn--RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~----------~~~~~~---------Pdl~L~gH~~eg 180 (422)
T KOG0264|consen 122 NHDGEVN--RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK----------ASGECR---------PDLRLKGHEKEG 180 (422)
T ss_pred cCCccch--hhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc----------ccccCC---------CceEEEeecccc
Confidence 4778888 8888886 7788999999987655443 111000 1223778888 7
Q ss_pred EEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCC
Q 005342 396 RESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 396 ~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~ 473 (701)
.+++|++... .|++|+.|++|.+||++.....+.+......+.+|...|..++|++-. ..+++++.|+.+.|||.+++
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 8899998654 789999999999999985444322222222346799999999999854 46788899999999987531
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCe
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIA 548 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i 548 (701)
+.+... ....|.++|.|++|+ +..||+|+ |++|.+||+++. ++++++.+|...|
T Consensus 261 -------------------~~~~~~--~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 261 -------------------TSKPSH--SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred -------------------CCCCcc--cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 111111 114799999999999 67788999 999999999875 4788999999999
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEeCCCC--------------ceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 005342 549 TYFILLPQD--LFAFGFDDSSILVHCPCTK--------------KTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLC 611 (701)
Q Consensus 549 ~~l~~spdg--~l~~gs~dg~I~iwd~~~~--------------~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~ 611 (701)
.++.|||+. .+|+++.|+.+.+||+..- +++..-.||+..|+.+.|+|+.. .++|.++|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999998 9999999999999998641 23456678999999999999776 677899999999
Q ss_pred EEECCC
Q 005342 612 VWDAVG 617 (701)
Q Consensus 612 vwd~~~ 617 (701)
||.+..
T Consensus 400 IW~~s~ 405 (422)
T KOG0264|consen 400 IWQMAE 405 (422)
T ss_pred Eeeccc
Confidence 999875
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.5e-21 Score=180.61 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=195.6
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
.+.|+ .+.|+|. +.||++++||+........+ .|.. +.+.
T Consensus 13 ~d~IS--~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~------------------------------~~~~plL~c 60 (323)
T KOG1036|consen 13 EDGIS--SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF------------------------------KHGAPLLDC 60 (323)
T ss_pred hhcee--eEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe------------------------------ecCCceeee
Confidence 45678 9999976 89999999999877544431 4555 8889
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g 478 (701)
+|.++ ..+++|+-||.|+.+|++ ++....+ ..|...|.|+.+++....+++||.|++|++||...
T Consensus 61 ~F~d~-~~~~~G~~dg~vr~~Dln----~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------ 125 (323)
T KOG1036|consen 61 AFADE-STIVTGGLDGQVRRYDLN----TGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------ 125 (323)
T ss_pred eccCC-ceEEEeccCceEEEEEec----CCcceee----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------
Confidence 99874 678999999999999998 5543332 24899999999999888899999999999997632
Q ss_pred ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe--cCCCCCeEEEEEcC
Q 005342 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLP 555 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~sp 555 (701)
....-. + .....|.++..+|+.|++|+ |..+.+||+++....... ...+..++|+++-|
T Consensus 126 ---------------~~~~~~-~--d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 126 ---------------KVVVGT-F--DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP 187 (323)
T ss_pred ---------------cccccc-c--ccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence 111110 1 23448889888888888877 999999999887643322 12355789999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCC----ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 556 QD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 556 dg-~l~~gs~dg~I~iwd~~~~----~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
++ -+++++-||.|.+=.++.. +....|+.|.. +|++++|+|-...||||+.||.|.+||+.+.+.+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 88 7888999999888666554 33445666653 8999999999889999999999999999985432
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
..+... . ..|.+++|+.||..||++
T Consensus 268 -----~q~~~~-~---~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 268 -----KQLAKY-E---TSISSLSFSMDGSLLAIA 292 (323)
T ss_pred -----hhccCC-C---CceEEEEeccCCCeEEEE
Confidence 212222 1 679999999999999985
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.1e-21 Score=181.71 Aligned_cols=245 Identities=17% Similarity=0.219 Sum_probs=192.9
Q ss_pred eEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342 320 LSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ 394 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~ 394 (701)
+..+..|.+.+. +++.+.- +.|.+|+|||..+...+.. +-.|.+
T Consensus 36 lF~~~aH~~sit--avAVs~~~~aSGssDetI~IYDm~k~~qlg~-----------------------------ll~Hag 84 (362)
T KOG0294|consen 36 LFAFSAHAGSIT--ALAVSGPYVASGSSDETIHIYDMRKRKQLGI-----------------------------LLSHAG 84 (362)
T ss_pred ccccccccccee--EEEecceeEeccCCCCcEEEEeccchhhhcc-----------------------------eecccc
Confidence 455688999999 8887755 8999999999987766555 236777
Q ss_pred -eEEEEEcCCCC--eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 395 -SRESTSLPDAD--SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 395 -V~~l~~spdg~--~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
|+++.|.|+.. .|++|+.||.|.+|+.. .-.+.. ...+|.+.|+.++.+|.|+.-++.+.|+.++.||+-
T Consensus 85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~---slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLK---SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEee---eecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 99999999876 89999999999999987 333333 456789999999999999999999999999999762
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
.+ ..+.+. + + ....+.+.|+ |.+++.+....|-+|.+.+......+.. +..+.
T Consensus 158 ~G------------------r~a~v~-~-L----~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 158 RG------------------RVAFVL-N-L----KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRIL 212 (362)
T ss_pred cC------------------ccceee-c-c----CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccce
Confidence 22 111121 1 2 2233458888 9989888877899999988776666552 34566
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE--ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342 550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~--spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
++.|...+.+++|.+|+.|.+||..+..+...+.+|..+|-++.+ .|++.+|+|+|.||.|+|||+....+.....+.
T Consensus 213 ~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~ 292 (362)
T KOG0294|consen 213 CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLA 292 (362)
T ss_pred eeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeE
Confidence 777765559999999999999999999999999999999999974 467889999999999999999986443333443
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=8.7e-21 Score=197.61 Aligned_cols=310 Identities=12% Similarity=0.105 Sum_probs=221.1
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ- 394 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~- 394 (701)
+.+|.++|. ++.|+|. +.|+++.+|-..+...+-.- ... .+. .+|..
T Consensus 263 l~GHeDWV~--sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~----------~vR-----------lGe--~gg~a~ 317 (764)
T KOG1063|consen 263 LMGHEDWVY--SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD----------VVR-----------LGE--VGGSAG 317 (764)
T ss_pred hcCcccceE--EEEEccchhhheecccCcceEEEecCCccceEEE----------EEE-----------eec--cccccc
Confidence 448999999 9999999 89999999987766443220 000 000 12333
Q ss_pred -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
.+...|+|++..+++-+.-|..++|...+ ... +....-..+|.+.|.+++|+|.|.++++.|.|.+-+++-.-..
T Consensus 318 GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d---~~~-w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 318 GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD---KTF-WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ceeeEEEcCCCCEEEEecccCcEEEEeccC---ccc-eeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 88899999999999999999999999442 222 2222233589999999999999999999999999888754311
Q ss_pred Cc---------cccccccce----------e------eEEe---------------------------------------
Q 005342 474 KQ---------SLEEENVNM----------E------SQLY--------------------------------------- 489 (701)
Q Consensus 474 ~~---------~~g~~~~~~----------~------i~~~--------------------------------------- 489 (701)
+. .-|.....+ + .++|
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 11 001000000 0 0111
Q ss_pred ----eCCCCeE----Ee---------------------ec-c-----cCCCCCCeEEEEec--CCEEEEEe-C-----Ce
Q 005342 490 ----QPSSKLV----MT---------------------ND-I-----AADPKDSISCFALR--GSHLFSAS-G-----GK 526 (701)
Q Consensus 490 ----d~~~~~~----~~---------------------~~-~-----~~~~~~~v~~l~~s--~~~l~s~s-d-----g~ 526 (701)
+..+|.. .. .. + ..+|...|++++.+ |+.+|+++ . ..
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 1111110 00 00 0 02789999999999 99999886 3 46
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEE
Q 005342 527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l 601 (701)
|++|+..+-..++.+.+|.-.|+.++||||| +|++.+.|.++.+|....... ....+.|+.-|+++.|+|++.++
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 9999999988888999999999999999999 999999999999998754321 22356799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CCEEEEE-ecCeEEEEECC
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg-~Dg~I~iwd~~ 666 (701)
||+|.|.+|+||....+.-.+...+..+ .+. ..|+.++|.|- +..+++| ..|.|.+|...
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~--~~~---~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRFACL--KFS---LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhhchh--ccC---CceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9999999999999988621111111101 122 88999999873 2255668 89999999964
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=6.5e-20 Score=189.95 Aligned_cols=266 Identities=13% Similarity=0.123 Sum_probs=189.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
+.+.+||..+++.+..+..+.. +. +++|+|+ +.++.|++||..+++.... +.
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~-~~--~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----------~~------- 70 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQR-PR--GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT----------LP------- 70 (300)
T ss_pred CEEEEEECCCCceEEEEECCCC-CC--ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe----------cc-------
Confidence 7899999999999999887654 67 8999998 5789999999998876554 11
Q ss_pred cCCCCCCCccccCCCceEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 379 SGDDSNDSSCFNDNNQSRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
.+..+..++|+|+|+.++++ +.++.+++||+. +.+... .++ +...+.+++|+|+|+.++
T Consensus 71 ------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~----~~~~~~-~~~---~~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 71 ------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIE----TRKVLA-EIP---VGVEPEGMAVSPDGKIVV 130 (300)
T ss_pred ------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECC----CCeEEe-Eee---CCCCcceEEECCCCCEEE
Confidence 12224568899999977654 568999999997 433222 111 223467899999999999
Q ss_pred EEECCCc-EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CCeEEEEeC
Q 005342 458 ALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSL 532 (701)
Q Consensus 458 s~s~dg~-i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg~I~iwd~ 532 (701)
+++.++. +.+|| ..++....... ....+.+++|+ |++++++ . ++.|++||+
T Consensus 131 ~~~~~~~~~~~~d---------------------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 131 NTSETTNMAHFID---------------------TKTYEIVDNVL---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EEecCCCeEEEEe---------------------CCCCeEEEEEE---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 8887654 55554 44444432211 12345678888 7777544 4 899999999
Q ss_pred CCCcEEEEecCCC-------CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 533 ETFQTLATFANPP-------PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 533 ~~~~~~~~~~~~~-------~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
++++.+..+..+. .....++++|++ .+ ++...++.+.+||+++++.+..+. +...+.+++|+|+|++|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEE
Confidence 9988776654221 123568899999 54 444556789999999988876654 4457899999999999887
Q ss_pred E-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 604 S-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 604 ~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
+ +.++.|++||+.+++.+. .+. .+ ...+.++++|
T Consensus 266 ~~~~~~~i~v~d~~~~~~~~--~~~---~~-----~~~~~~~~~~ 300 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKVIK--SIK---VG-----RLPWGVVVRP 300 (300)
T ss_pred EcCCCCeEEEEECCCCcEEE--EEE---cc-----cccceeEeCC
Confidence 6 468999999999986433 222 22 4458888775
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.3e-20 Score=177.66 Aligned_cols=267 Identities=12% Similarity=0.110 Sum_probs=186.4
Q ss_pred cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCC---CCce-eE---ee-cCCCCCCCCEEEEEEec-CCCEEEE
Q 005342 390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINE---PSEC-RT---LL-LPDNSFGGRVVRLIYSH-SGDFLVA 458 (701)
Q Consensus 390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~---~~~~-~~---l~-~~~~~~~~~v~~l~~sp-dg~~l~s 458 (701)
..|.+ |+++...| .|+++++|+.||.+.+||+++... .+-+ .. +. -...+|.-.|..+.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46778 99999977 699999999999999999985431 1111 11 01 11236778899999998 4446777
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeC
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSL 532 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~ 532 (701)
++.|.+++|||.++ -+.... + ..++.|.+-++| ...+++|. |-.|++.|+
T Consensus 120 sSFDhtlKVWDtnT---------------------lQ~a~~-F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNT---------------------LQEAVD-F--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccccceEEEeeccc---------------------ceeeEE-e--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 88899999997633 221111 2 234567777776 34566666 789999999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceE--------------EeecCCCCCeEEEEEe
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTK--------------AKLKGHQNRITCLAYS 595 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~--------------~~l~~h~~~V~~v~~s 595 (701)
..|...+++.||.+.|.++.|+|.. .+++|+.||.|++||++.. .+. +.-..|.+.|+.++|+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 9999999999999999999999999 8899999999999999753 111 1223478899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l 674 (701)
.||.++++++.|..+++|+..+|+........ + .|....+.-..+. +-+...++- -.++++.++++-.|..++.+
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~-~--~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGP-I--IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred ccchhhhhccCccceEEeecccCccccccccc-c--cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence 99999999999999999999998633211111 1 1100001111133 333333332 25677888888777777777
Q ss_pred ee----eeEEEEEe
Q 005342 675 LL----ISHIMFVQ 684 (701)
Q Consensus 675 ~~----i~~~~fs~ 684 (701)
.. |...+|-|
T Consensus 332 ~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 332 STHLKRINCAAYRP 345 (397)
T ss_pred ecccceeeEEeecC
Confidence 66 55555543
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.2e-22 Score=207.24 Aligned_cols=258 Identities=14% Similarity=0.198 Sum_probs=194.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCC---CCCEEEEEEec-CCCEEEEEECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF---GGRVVRLIYSH-SGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~---~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~ 470 (701)
.++++..++-..++.++. ..++++.++.......|.. .+... .-.+..+.|.. +.++|++++.+|.|.+||+
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~---~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNH---RFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceee---ecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 556777788888888887 5677887763222222221 11111 12344567764 4678999999999999988
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
... ..+..++ .+ ..|...+.++.|+ .++|++|+ ||.|++||++..+...++.+...
T Consensus 118 nk~------------------~rnk~l~-~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 118 NKS------------------IRNKLLT-VF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred Ccc------------------ccchhhh-Hh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 331 0111211 12 4799999999999 88999999 99999999999999999998888
Q ss_pred CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 547 IATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
.|+.+.|+|.. .++++.+.|.+++||++.. +....+..|.++|.++.|+|++.+|||||.|+.|+|||+.+++....
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence 99999999976 9999999999999999864 56677889999999999999999999999999999999998764443
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCE-EEEE---ecCeEEEEECCCCc-eeeeeee----eeEEEEEe
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIH-LLSI---HEGQIDVYEAPTLN-HTSQVLL----ISHIMFVQ 684 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~sg---~Dg~I~iwd~~~g~-~~~~l~~----i~~~~fs~ 684 (701)
..+. .. .+|.+|.|-|+.++ ||++ .|..|+|||+..-= +-+++.. ++.++|..
T Consensus 258 ~tIn---Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 258 HTIN---TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eEEe---ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 4444 22 78999999998655 5553 68899999996532 3344443 77788853
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=178.52 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=198.2
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
..|++|.+.|+ +++||.| +.|++|++|++........ +.+... .-.+|
T Consensus 80 ~~LKgH~~~vt--~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~n--------------ve~dh- 134 (420)
T KOG2096|consen 80 SVLKGHKKEVT--DVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQN--------------VEYDH- 134 (420)
T ss_pred hhhhccCCcee--eeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhcc--------------ccCCC-
Confidence 46799999999 9999999 8999999999976322111 000000 00122
Q ss_pred ceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 394 QSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 394 ~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
-+.+.|+||-+.++ ++....++++|.+....+++-.......+ ..|.-.+..+-...++++|++++.|..|.+
T Consensus 135 -pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 135 -PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred -ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 45788999987655 45556789999886544433222111001 135566777888888999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCc-----
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQ----- 536 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~----- 536 (701)
|++. |+.+.. +. .....-+..++| |+++++++ ...|++|..- .|.
T Consensus 214 w~lk----------------------Gq~L~~-id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 214 WDLK----------------------GQLLQS-ID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred EecC----------------------Cceeee-ec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence 9763 333221 11 112233455667 89999888 7889999852 232
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------CceEEeec----CCCCCeEEEEEecCCCEEEEE
Q 005342 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLK----GHQNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-------~~~~~~l~----~h~~~V~~v~~spdg~~l~s~ 604 (701)
.+..+.||.+.|..++|+|+. .+++.|.||++++||..- .+.+++.. .-.+....++.+|.|+.||.+
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 345678999999999999999 999999999999999752 12222221 112233489999999988754
Q ss_pred eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
. ...++++..++|+.. ..+..-|. ..|.+++|+|+|++++++.|..++++.-
T Consensus 350 ~-gs~l~~~~se~g~~~-----~~~e~~h~---~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 350 F-GSDLKVFASEDGKDY-----PELEDIHS---TTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred c-CCceEEEEcccCccc-----hhHHHhhc---CceeeEEecCCCcEEeeecceeeeeecC
Confidence 4 568999999998532 22444554 8899999999999999999999998763
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=5.7e-21 Score=199.11 Aligned_cols=240 Identities=14% Similarity=0.125 Sum_probs=198.6
Q ss_pred CcccccccCcccee--EEEeecCcceeeeE-EEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 307 DKLKFPSMDKSRLL--SLIKQIMDWWVPYC-INVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 307 ~~i~iwd~~~~~~~--~~l~~h~~~v~~~~-l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
+++++|+-...+.+ +.+.+|.+.+. + ++|-+. +.|.++.+|.......+.+
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~--~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~---------------- 96 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIA--NSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT---------------- 96 (745)
T ss_pred CceeeeeccCcccccceecccCcceee--ccceeccccCcceEeecccceEEEEecCCCCchhh----------------
Confidence 88999987555444 56788999888 5 777762 8899999998877766655
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~ 454 (701)
|++|.. |.+++...++. +++||.|.++++|... ++.. ...+|...|++++.-|++
T Consensus 97 -------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~---~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 97 -------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVY---SLQGHTASVWAVASLPEN- 152 (745)
T ss_pred -------------hhccccceeeeecCCcCc-eEecccccceEEecch------hhhc---ccCCcchheeeeeecCCC-
Confidence 467888 99999888888 9999999999999975 3333 345799999999999999
Q ss_pred EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeC
Q 005342 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSL 532 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~ 532 (701)
.+++||.|.+|++|+ .++++.. + .+|.+.|+.+++- +..+++++ ||.|++|++
T Consensus 153 ~~vTgsaDKtIklWk-----------------------~~~~l~t-f-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWK-----------------------GGTLLKT-F-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred cEEeccCcceeeecc-----------------------CCchhhh-h-ccchhheeeeEEecCCCeEeecCCceEEEEec
Confidence 679999999999993 3444432 4 4899999999998 77888888 999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
+|..+.++.+|..-+++++..+++ .|+++++|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~Vr 283 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVR 283 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEE
Confidence 889999999999999999977766 99999999999999965 77777774445899999988887 66788899999
Q ss_pred EEECCC
Q 005342 612 VWDAVG 617 (701)
Q Consensus 612 vwd~~~ 617 (701)
||....
T Consensus 284 VfT~~k 289 (745)
T KOG0301|consen 284 VFTVDK 289 (745)
T ss_pred EEEecc
Confidence 998764
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.1e-20 Score=177.96 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=193.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|+++.|+|.+..|+.++.||++++|++.. ..... .+ .|..++.+++|.++. .+++|+.||.|+.+|++++
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~----~~l~~---~~-~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~- 85 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPA----NSLKL---KF-KHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTG- 85 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccc----hhhhh---he-ecCCceeeeeccCCc-eEEEeccCceEEEEEecCC-
Confidence 99999999999999999999999999973 22111 11 278999999999754 5899999999999977432
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
....+ ..|..+|.|+..+ .+.+++|+ |++|++||.+.......+. ....|.++
T Consensus 86 ------------------~~~~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~ 141 (323)
T KOG1036|consen 86 ------------------NEDQI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM 141 (323)
T ss_pred ------------------cceee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence 11222 4689999999999 77889999 9999999998766666665 34478887
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe----eeeeee
Q 005342 552 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK----KLCSKF 625 (701)
Q Consensus 552 ~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~----~~~~~~ 625 (701)
..+.+ .|++|+.|..+.+||+++.......+ .-+-.+.++++-|++.=.|.+|-||+|.+=.+...+ +.....
T Consensus 142 ~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 142 DVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred eccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 77654 89999999999999999865433221 233468999999988878889999999987776641 111111
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
-+.........-.+|++++|+|-...+|+| .||.|.+||+.+.+.++.+.. |.+++|+.+
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccC
Confidence 110111111112579999999999999996 899999999999988888877 888998755
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.6e-21 Score=189.49 Aligned_cols=264 Identities=12% Similarity=0.109 Sum_probs=203.6
Q ss_pred CCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEe
Q 005342 391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd 469 (701)
.|.+|+++.|||....+++|+.|++++||.++..... .+..+.+ ...+|.+..|.|+|. .+++++....++.||
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEee
Confidence 3555999999999999999999999999999621111 1222222 467899999999999 888888899999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
+.+. ++.......++ ...+..+.++ +++|+..+ .|.|++.-..+++.+.++. ..
T Consensus 287 le~a---------------------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie 344 (514)
T KOG2055|consen 287 LETA---------------------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE 344 (514)
T ss_pred cccc---------------------ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence 7443 22110011122 2345667777 88999988 8999999999999999887 67
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEECCCCee-ee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LC 622 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~-~~ 622 (701)
+.|..++|+.|| .|++.+.+|.|++||++...+++++....+ .-++++.|++|.|||+||+.|.|.|||..+-.. ..
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence 789999999999 888888899999999999999998874222 336678889999999999999999999765210 01
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E--ecCeEEEEECCCCceeeeeee-------eeEEEEEee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQVLL-------ISHIMFVQI 685 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g--~Dg~I~iwd~~~g~~~~~l~~-------i~~~~fs~~ 685 (701)
.+++.++..-. ..|++++|+||++.||. + .++.+++-.+.+......+|. |++++|||-
T Consensus 425 PkPik~~dNLt----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 425 PKPIKTVDNLT----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred CCchhhhhhhh----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 23333332222 78999999999999886 3 588999999999998888886 999999984
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.3e-20 Score=177.22 Aligned_cols=255 Identities=12% Similarity=0.102 Sum_probs=186.0
Q ss_pred eecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 324 KQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
.+|.+.|. |+.|.+. +.|++++|||...+..--. . ...-+.|.+ |
T Consensus 10 s~h~Dlih--dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------~---------------Ts~Wrah~~Si 62 (361)
T KOG2445|consen 10 SGHKDLIH--DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS----------C---------------TSSWRAHDGSI 62 (361)
T ss_pred cCCcceee--eeeecccCceeeeccCCCcEEEEeccCCCCceE----------E---------------eeeEEecCCcE
Confidence 57888899 9999887 8999999999755443222 0 111467888 9
Q ss_pred EEEEEc-C-CCCeEEEEcCCCcEEEEecccc--CCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEe
Q 005342 396 RESTSL-P-DADSAVCAKSLEKSVNLKLQLI--NEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWK 469 (701)
Q Consensus 396 ~~l~~s-p-dg~~l~s~s~d~~v~iw~~~~~--~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd 469 (701)
+.+.|. | -|+.+|+++.|+++.||.-... ...+..+...-........|+++.|.|. |-.+++++.||.++||+
T Consensus 63 ~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 63 WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 999995 4 4999999999999999986322 2222222222223446789999999995 66889999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec-----CCEEEEEeCC------eEEEEeCCCC--
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR-----GSHLFSASGG------KISIFSLETF-- 535 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s-----~~~l~s~sdg------~I~iwd~~~~-- 535 (701)
.-.. ..+.-|.+.... .+.. ....+..+..|+.|+ ..+|++|+|. .+.||....+
T Consensus 143 A~dp----------~nLs~W~Lq~Ei~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 143 APDP----------MNLSQWTLQHEIQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred cCCc----------cccccchhhhhhhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 5221 112223322211 1110 112456678889998 5578888854 8889886543
Q ss_pred --cEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC--------------------ceEEeecCCCCC
Q 005342 536 --QTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK--------------------KTKAKLKGHQNR 588 (701)
Q Consensus 536 --~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~--------------------~~~~~l~~h~~~ 588 (701)
..+.++.+|..+|+.++|.|+- .||+++.|| |+||.++.. +.+..+.+|++.
T Consensus 212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 2456778899999999999974 899999999 999998731 235567789999
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 589 V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
|..+.|+-.|..|+|.|+||.||+|...-
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99999999999999999999999998764
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.4e-22 Score=211.66 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=202.0
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
|.+.+++.+..+-.+++|+..+ ...|...|.++..-..++.+++|+.|..+.+|.+...
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~-------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------- 60 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE-------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------- 60 (825)
T ss_pred Ccccccceeeeeeccccccchh-------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--------
Confidence 3344555666666778888751 1236778888888778889999999999999965221
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 557 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg- 557 (701)
|. .+. + .+|..+|.++.|+ ...|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+
T Consensus 61 -------~~-----i~S--~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 61 -------NA-----ITS--L-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred -------ch-----hhe--e-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence 01 111 2 4799999999999 55666677 8999999999999999999999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
+.|.|+.|+.+.+||++...+.+.+.+|...|..+.|+|+|+++++|++|.+++|||...|+.. .++. +|.
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----~ef~-~~e--- 196 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----KEFK-SHE--- 196 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----cccc-ccc---
Confidence 9999999999999999988899999999999999999999999999999999999999998532 2122 444
Q ss_pred CCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEeeee
Q 005342 638 TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKFHS 691 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f~~ 691 (701)
+.+.++.|+|..-++++| .|+++++||+++.+.+..... |.+.+|+|+...+..
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 889999999998888886 899999999999888877766 999999988776654
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-19 Score=187.06 Aligned_cols=216 Identities=9% Similarity=0.052 Sum_probs=162.1
Q ss_pred CcccccccCccce-eEEEeecCc-ceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRL-LSLIKQIMD-WWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~-~~~l~~h~~-~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
+.|.||++.++-+ ...+.++.+ .|. .++|++. +.+|.|.-||+.+++....+ +
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE--~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~----------d------- 107 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIE--SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI----------D------- 107 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCcee--eEEEccCCeEEeecCCceEEEEecccCceeEEe----------c-------
Confidence 8999999988744 456676654 577 9999977 88999999999999887762 1
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 457 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~ 457 (701)
...+ ||+++.+|.++.++.|+.||.+..++.. ++.+..-. .+...+++|.++.|+|++..++
T Consensus 108 ------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~----p~~I~~~r-~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 108 ------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIG----PDKITYKR-SLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred ------------CCCcceeEEEeCCccceEEeecCCceEEEEecC----CceEEEEe-ecccccceEEEEEecCCccEEE
Confidence 1223 9999999999999999999977777776 44432211 2233468999999999999999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETF 535 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~ 535 (701)
+|+.||.|++||...+.. +++ .+.++.. +.+....-|+++.+- .+.|++|. .|+|.+||...+
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t----------~~~---~~~~~d~--l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQT----------LHI---ITMQLDR--LSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred ecccCceEEEEEcCCCce----------EEE---eeecccc--cccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence 999999999997744321 000 0000110 111223345555555 88899998 799999999999
Q ss_pred cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 536 QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 536 ~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
..++.+..|...|.+++..+++ .+.+++.|+.|.-|..
T Consensus 236 TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 236 TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 9999999999999999999998 8888888887766554
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.9e-21 Score=175.17 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=182.4
Q ss_pred eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342 324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE 397 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~ 397 (701)
.+|.+.|....+.|... +.|++|+|+.+........ ..-|.||.+ |+.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l--------------------------l~~L~Gh~GPVwq 61 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL--------------------------LAELTGHSGPVWK 61 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee--------------------------eeEecCCCCCeeE
Confidence 34666555333444444 8899999999876654332 223678999 999
Q ss_pred EEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEecCCC
Q 005342 398 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 398 l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~ 473 (701)
++|.. -|.+||+++.||.|.||.-. .++..+ ......|...|.+++|.|. |-.|++++.||.|.|.+.+.
T Consensus 62 v~wahPk~G~iLAScsYDgkVIiWke~----~g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~- 135 (299)
T KOG1332|consen 62 VAWAHPKFGTILASCSYDGKVIIWKEE----NGRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS- 135 (299)
T ss_pred EeecccccCcEeeEeecCceEEEEecC----CCchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC-
Confidence 99954 79999999999999999987 443222 2233468999999999997 45788999999999997733
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----C-----------CEEEEEe-CCeEEEEeCCCCc
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-----------SHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~-----------~~l~s~s-dg~I~iwd~~~~~ 536 (701)
+.+....+ +...|.-.|++++|. | ..|++|+ |..|+||+...+.
T Consensus 136 ------------------~g~w~t~k-i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 136 ------------------SGGWTTSK-IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred ------------------CCCccchh-hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 22222211 334688888888887 2 5689999 9999999997763
Q ss_pred --EEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC--c-eEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342 537 --TLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK--K-TKAKLKGHQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 537 --~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~--~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~ 606 (701)
..+++.+|...|+.++|.|.- .||+++.||++.||-.+.. . ....++.....+.++.||+.|+.|+.++.
T Consensus 197 w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 197 WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 455688999999999999974 8999999999999986632 1 11222334567999999999999999999
Q ss_pred CCeEEEEECCC
Q 005342 607 DAQLCVWDAVG 617 (701)
Q Consensus 607 D~~I~vwd~~~ 617 (701)
|+.|.+|.-..
T Consensus 277 dNkvtlwke~~ 287 (299)
T KOG1332|consen 277 DNKVTLWKENV 287 (299)
T ss_pred CcEEEEEEeCC
Confidence 99999997543
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-19 Score=173.42 Aligned_cols=235 Identities=14% Similarity=0.155 Sum_probs=179.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i 465 (701)
+..|.. +++++.+ |.++|+|+.|.+|+|||+......+.+. .|.+.|+++.|.++-. .|++|+.||.|
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-------~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-------SHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-------ccccceEEEEecCCcchhheeeecCCCcE
Confidence 457888 9999884 7899999999999999998433333222 3899999999999875 89999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.+|+. .+-.++.. + ++|.+.|+.++++ |+..++.+ |+.++.||+-+|+.-....
T Consensus 110 ~iw~~---------------------~~W~~~~s-l-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 110 IIWRV---------------------GSWELLKS-L-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred EEEEc---------------------CCeEEeee-e-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 99965 33333332 3 5788899999999 77666666 9999999998887554443
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
-....+.+.|+|.| +++.+..+ .|-+|.+.+..+...+. ....+.++.|- ++..|++|++|+.|.+||..++.
T Consensus 167 -L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~-- 240 (362)
T KOG0294|consen 167 -LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDT-- 240 (362)
T ss_pred -cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCc--
Confidence 23344569999999 77777665 68899888877665554 22456676664 67789999999999999999853
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEE--cCCCCEEEE-EecCeEEEEECCCC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQF--HPDQIHLLS-IHEGQIDVYEAPTL 668 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~--spdg~~l~s-g~Dg~I~iwd~~~g 668 (701)
++..+. +|. ..|-++.+ .|++.+|++ |+||.|+|||++..
T Consensus 241 ---~~~~~~-AH~---~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 ---PLTEFL-AHE---NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---cceeee-cch---hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 333233 554 88988874 567888988 69999999999765
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.7e-20 Score=176.78 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=169.7
Q ss_pred CCCCEEEEEEec-CCCEEEEEECCCcEEEEecCCCCc--cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342 440 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (701)
Q Consensus 440 ~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~--~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s- 515 (701)
|.+.|.++...+ .|+++++|+.||.+.+||++.... ..+...... ..+.+.-+.+|+..|.++.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----------c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----------CIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee----------eeccccCCccceeeeeeeEEee
Confidence 778899999887 589999999999999999966542 111111100 011122234788899999987
Q ss_pred --CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342 516 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (701)
Q Consensus 516 --~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (701)
..++.+++ |.++++||.+|.+....|. .++.|.+-++||-. +||+|..|-.|++-|+.+|..-+++.||.+.
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 55777888 9999999999998888887 67789999999865 8999999999999999999999999999999
Q ss_pred eEEEEEecCCC-EEEEEeCCCeEEEEECCCCeeeeeeeee----------eccCCCCCCCCCeEEEEEcCCCCEEEE-Ee
Q 005342 589 ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLH----------SFQTGLVPETTIVNHIQFHPDQIHLLS-IH 656 (701)
Q Consensus 589 V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g~~~~~~~l~----------~~~~~~~~~~~~v~~v~~spdg~~l~s-g~ 656 (701)
|.++.|+|... .|++||.||.|++||++... -|...+. +....| .+.|++++|+.||.++++ |.
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~~n~ah---~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILKTNTAH---YGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccccccccc---cceeeeeeecccchhhhhccC
Confidence 99999999776 56899999999999998631 0111111 011223 388999999999999998 68
Q ss_pred cCeEEEEECCCCce
Q 005342 657 EGQIDVYEAPTLNH 670 (701)
Q Consensus 657 Dg~I~iwd~~~g~~ 670 (701)
|..+++|+..+|+.
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 99999999998864
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.4e-20 Score=186.93 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=193.6
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
+.++.|+.... .+++.+.|..+++|.-... ++++..+.. .....-.|++......|+++|+..+.|+|||+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k---~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl--- 108 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRK---LTGDNAFCVACASQSLYEISGGQSGCVKIWDL--- 108 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCC--CCccceeec---cccchHHHHhhhhcceeeeccCcCceeeehhh---
Confidence 88999987754 3344567888999986521 222222221 12234556666666689999999999999976
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-CCCeE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIAT 549 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~~~i~ 549 (701)
....+.. +..+|...|+++.++ +.+|++++ .|.|.+..+.++....+|... ...+.
T Consensus 109 ------------------~~kl~hr--~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 109 ------------------RAKLIHR--FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred ------------------HHHHHhh--hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 3222332 336899999999999 99999999 799999999999887777644 44567
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 550 YFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 550 ~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
-+.++|.. ++.+++.+|.|.+||+....++..+. .|..+...++|+| +..+||+.+.|.+|++||..+.+. ...
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--~~~ 246 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--TDR 246 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--cce
Confidence 89999998 88899999999999998877776554 5999999999999 556889999999999999997542 222
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC-ceeeeeee----eeEEEEEee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g-~~~~~l~~----i~~~~fs~~ 685 (701)
+. .. .+...++|+++|.+|++| ..|.|..||++.. .+++++.. |++++|-|.
T Consensus 247 l~---y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 247 LT---YS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ee---ec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 22 11 678999999999999998 7999999999754 45666665 999999655
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.5e-20 Score=173.36 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=195.2
Q ss_pred eeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC
Q 005342 332 PYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD 403 (701)
Q Consensus 332 ~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd 403 (701)
..|+.||+. ..||.|.|||..|...-+. |.+|.. |.+++||+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~-----------------------------lsaH~~pi~sl~WS~d 76 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM-----------------------------LSAHVRPITSLCWSRD 76 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhh-----------------------------hhccccceeEEEecCC
Confidence 449999998 7899999999987664443 456777 999999999
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEEEEecCCCCcccccccc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENV 482 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~~~~~~~~g~~~~ 482 (701)
|+.|+|++.|..+.+||+.. +...+++.+ ..+|+.+.|+|-.+. .+++-.+..-.+-++.
T Consensus 77 gr~LltsS~D~si~lwDl~~---gs~l~rirf-----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----------- 137 (405)
T KOG1273|consen 77 GRKLLTSSRDWSIKLWDLLK---GSPLKRIRF-----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----------- 137 (405)
T ss_pred CCEeeeecCCceeEEEeccC---CCceeEEEc-----cCccceeeeccccCCeEEEEEecCCcEEEEec-----------
Confidence 99999999999999999983 222344444 688999999996543 3333334444444431
Q ss_pred ceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCC-
Q 005342 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD- 557 (701)
Q Consensus 483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg- 557 (701)
.....++.+.-.........+..|. |+++++|. .|.+.++|..+.+++..++-.. ..|.++.++..|
T Consensus 138 --------~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 138 --------DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR 209 (405)
T ss_pred --------CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc
Confidence 1111222211000011111122455 99999999 8999999999999998887555 789999999999
Q ss_pred eEEEEeCCCcEEEEeCCC-------Cc--eEEeecC--CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeee
Q 005342 558 LFAFGFDDSSILVHCPCT-------KK--TKAKLKG--HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~-------~~--~~~~l~~--h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~ 625 (701)
++++.+.|..|+.|+++. ++ +.+++.. .+-.-.+++||.+|.|++.++. ...++||....|.++ +.
T Consensus 210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV--KI 287 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV--KI 287 (405)
T ss_pred EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee--ee
Confidence 999999999999999863 11 1222222 2234567899999999887664 568999999998744 33
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
++ |..+ .....+.|+|-...+++-..|.++||....-+
T Consensus 288 Lh----G~kg--E~l~DV~whp~rp~i~si~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 288 LH----GTKG--EELLDVNWHPVRPIIASIASGVVYIWAVVQVE 325 (405)
T ss_pred ec----CCch--hheeecccccceeeeeeccCCceEEEEeeccc
Confidence 33 4321 45678999999888888789999999875443
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-19 Score=193.07 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=197.5
Q ss_pred ecCcceeeeEEEEccC-------CCCCeEEEEeccCC-ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTV-SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
.|+..-. .++|.|+ +.|+.|++|+.... +....+ ..+.. |
T Consensus 11 aht~G~t--~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-----------------------------~~~g~~v 59 (933)
T KOG1274|consen 11 AHTGGLT--LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-----------------------------DISGELV 59 (933)
T ss_pred hccCceE--EEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-----------------------------hccCcee
Confidence 5666667 8888888 89999999987654 222221 11333 5
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
.+++- ++.+|++|+.+++|..+.+.+....+-+-++ +-++.+++++.+|++++.||.|-.|++-+.
T Consensus 60 ~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf-------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~----- 125 (933)
T KOG1274|consen 60 SSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF-------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNL----- 125 (933)
T ss_pred EEEee--cccceEEeeccceEEEeeCCCCCccceeeee-------eccceEEEEecCCcEEEeecCceeEEEEec-----
Confidence 55444 5559999999999999999855444433332 457899999999999999999999999876
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--------
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-------- 544 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-------- 544 (701)
+-.+.+.. + .+|..+|.++.++ +++||+.+ ||.|++||+.++.+..++.+-
T Consensus 126 --------------~D~s~~~~---l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 126 --------------DDSSQEKV---L-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred --------------cccchhee---e-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 22333333 2 5899999999999 99999998 999999999998877666432
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...++.++|+|+| .+++...|+.|.+|+..+.+....+++ |.+.+..+.|+|.|+|||+++.||.|-|||+.+-+
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~-- 265 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE-- 265 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--
Confidence 3345789999998 888889999999999999998888876 44569999999999999999999999999999832
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.+... ..|.+++|.|+...+-.
T Consensus 266 -~~~~~----------~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 266 -RHEFK----------RAVCCEAWKPNANAITL 287 (933)
T ss_pred -hcccc----------ceeEEEecCCCCCeeEE
Confidence 11111 77999999999876543
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3e-20 Score=190.39 Aligned_cols=286 Identities=15% Similarity=0.200 Sum_probs=210.6
Q ss_pred cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
.+|-..+.+|++.|. |++-.|. +.||+++||.+.||.|+++.
T Consensus 390 t~~~lvyrGHtg~Vr--~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----------------------------- 438 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVR--SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----------------------------- 438 (733)
T ss_pred ceeeeeEeccCCeEE--EEEecCCcceeeecCCCCcEEEEEeecceEEEEE-----------------------------
Confidence 456677899999999 8777776 89999999999999999983
Q ss_pred cCCCc-eEEEEEcCCCC--eEEEEcCCCcEEEEecc---------------------------------ccCC--CCcee
Q 005342 390 NDNNQ-SRESTSLPDAD--SAVCAKSLEKSVNLKLQ---------------------------------LINE--PSECR 431 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~--~l~s~s~d~~v~iw~~~---------------------------------~~~~--~~~~~ 431 (701)
.-.. |.+++|+|.+. .||.+-.+. +.|-+.. .... .+-|.
T Consensus 439 -~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~ 516 (733)
T KOG0650|consen 439 -QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI 516 (733)
T ss_pred -eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence 1123 88999998765 344433322 3333321 1000 01011
Q ss_pred EeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC
Q 005342 432 TLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 508 (701)
Q Consensus 432 ~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 508 (701)
.+ .|...|..+.|+..|.||++...+ ..|.|.++ ....... .+ ....+.
T Consensus 517 ~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL---------------------SK~~sQ~-PF-~kskG~ 568 (733)
T KOG0650|consen 517 VI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL---------------------SKRKSQS-PF-RKSKGL 568 (733)
T ss_pred EE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEec---------------------ccccccC-ch-hhcCCc
Confidence 11 367889999999999999988764 45666654 2222111 12 134567
Q ss_pred eEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecC
Q 005342 509 ISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKG 584 (701)
Q Consensus 509 v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~ 584 (701)
|.++.|+ ..++++++-..|++||+.....+.++......|.+++++|.| .|++|+.|+.+..+|+.- .++.++++.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~ 648 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL 648 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh
Confidence 8899999 778888888899999998888888777677789999999999 999999999999999975 467788889
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee----eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCe
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 659 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~----~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~ 659 (701)
|...+++|+|++.-.++++|++||++.|+.-.-..-. ...++..+.++.......|..+.|+|...+|++ |.||+
T Consensus 649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCce
Confidence 9999999999999999999999999999964321000 123455344333323356889999999999998 58999
Q ss_pred EEEE
Q 005342 660 IDVY 663 (701)
Q Consensus 660 I~iw 663 (701)
|++|
T Consensus 729 irlf 732 (733)
T KOG0650|consen 729 IRLF 732 (733)
T ss_pred EEee
Confidence 9998
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-21 Score=203.16 Aligned_cols=232 Identities=16% Similarity=0.212 Sum_probs=195.2
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
.|.. |.++..-..++.+++|+.|..+.+|..... .... .+.+|..+|.++.|+++...|++|+.+|+|++||
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~----S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAIT----SLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCC---chhh----eeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 4555 667777777889999999999999998631 1111 2457999999999999999999999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
+ ..+..+.+ + .+|...+.++.|+ +.+.++|+ |+.+.+||++...+.+.+.+|..
T Consensus 99 l---------------------eeAk~vrt-L-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 99 L---------------------EEAKIVRT-L-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred h---------------------hhhhhhhh-h-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 6 44443332 3 4788999999999 99999999 99999999998889999999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
.+..+.|+|+| +++.|++|..++|||...|+....|.+|.+.+.++.|+|..-++++||.|+++++||+++-+ .
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-----~ 230 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-----V 230 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-----E
Confidence 99999999999 99999999999999999999999999999999999999998899999999999999999843 2
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEE
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 661 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~ 661 (701)
+...... . ..|.+..|+|++..+++|..-++.
T Consensus 231 I~s~~~~-~---~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 231 ISSGKPE-T---DGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeccCCc-c---CCceeeeecCCceeeecCchhhhh
Confidence 2212212 2 789999999999999998544444
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=182.00 Aligned_cols=273 Identities=12% Similarity=0.097 Sum_probs=203.8
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRE 397 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~ 397 (701)
...|. +++||.+ ..||.|.+|++..+-+.... + .++.+ |.+
T Consensus 25 Ps~I~--slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v---------i-------------------~g~~drsIE~ 74 (691)
T KOG2048|consen 25 PSEIV--SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV---------I-------------------HGPEDRSIES 74 (691)
T ss_pred ccceE--EEEEeccCCceeeeccCCcEEEEccCCCceeeEE---------E-------------------ecCCCCceee
Confidence 34566 8888877 57899999999887665542 3 34444 999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
++|+ +|..|.+.+.+|.|.-||+. +.+... ......+.|++++.+|.+..++.|+.||.+...+.
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~----~lk~~~---~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~------- 139 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLH----TLKQKY---NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI------- 139 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecc----cCceeE---EecCCCcceeEEEeCCccceEEeecCCceEEEEec-------
Confidence 9999 55667788888999999998 443222 12235789999999999999999999996655533
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec----C----CCC
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA----N----PPP 546 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~----~~~ 546 (701)
..+.+.........+++|.+++|+ +..+++|+ ||.|++||..++..++... + ...
T Consensus 140 --------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 140 --------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred --------------CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 333322211112346899999999 77799999 9999999999988766221 1 223
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 547 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 547 ~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
-|.++.+-.++.|++|...|+|.+||...+.+++.+..|.+.|.+++..+++.++++++.|++|.-+...++.... ..
T Consensus 206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w--v~ 283 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW--VI 283 (691)
T ss_pred EEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce--ee
Confidence 4678888877799999999999999999999999999999999999999999999999999999999988764321 11
Q ss_pred eeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
.....+|. ..|.+++..++ .+++| .|.++.+=..
T Consensus 284 ~~~r~~h~---hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 284 NSRRDLHA---HDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred eccccCCc---ccceeeeeecc--eEEecceeeEEEEccc
Confidence 11233554 77888888776 55553 6776665443
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=9.8e-20 Score=187.22 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=128.5
Q ss_pred CCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-------EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeC
Q 005342 507 DSISCFALR---GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCP 573 (701)
Q Consensus 507 ~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-------~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~ 573 (701)
..|+++.|+ .+.|++++ ||.|++|.+..+. ....+..|...|+++.|+|-. .+++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 457888888 67888888 8999999986542 445677899999999999987 9999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
.+++....+.||++.|..++|||||+.+|+.+.||+|+||+.++++ .++. .+..+-...--.|.|.-||++++
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCCCccCcceeEEEEecCcEEE
Confidence 9999999999999999999999999999999999999999999874 3333 23322224446788999999988
Q ss_pred E-Ee----cCeEEEEECCCC
Q 005342 654 S-IH----EGQIDVYEAPTL 668 (701)
Q Consensus 654 s-g~----Dg~I~iwd~~~g 668 (701)
+ |- ...|.+||.++.
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred Eecccccchhhhhhhhhhhc
Confidence 7 53 456899998764
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=3.2e-19 Score=184.38 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=183.1
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKL 467 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~v 467 (701)
..|.+ |..+.|-|....|++++.|.+++.||+. .+.+.-.. ..-+|...|.+++|.|+.. .|++|+.||.+.|
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk----~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK----TSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeec----cceeecce-eecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 47888 9999999977789999999999999998 55554432 2347999999999999765 6788899999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCC-----eEEeeccc--CCCCC----CeEEEEec-CCEEEEEe--CCeEEEEeCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSK-----LVMTNDIA--ADPKD----SISCFALR-GSHLFSAS--GGKISIFSLE 533 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~-----~~~~~~~~--~~~~~----~v~~l~~s-~~~l~s~s--dg~I~iwd~~ 533 (701)
||+.-+.. ++ ...+..++++..++ +...+.++ ..+.. .|+.+.|- ...||+++ |+.|+|||++
T Consensus 172 WD~R~n~~-d~--~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 172 WDCRCNGV-DA--LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEeccch-hh--HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 99866542 00 00000011111111 00000000 12222 35556666 78888887 8999999998
Q ss_pred CCcEEE--------EecCC---CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCC--CeEEEEEecC
Q 005342 534 TFQTLA--------TFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQN--RITCLAYSLS 597 (701)
Q Consensus 534 ~~~~~~--------~~~~~---~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~--~V~~v~~spd 597 (701)
+..... .+..+ ...+.++..+..| ++.+.+.|+.|+.||+.+. .++..+.|+.. .-..-..+||
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 764332 22222 3357888888888 7777777999999999864 34455555432 1223356899
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECCCCc
Q 005342 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~~g~ 669 (701)
+.++++|+.|...++|.+.+-+ .... +..||. ..|++++|.|. +..+.+++|.+++||++..+-
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e----~~~~-~l~Ght---~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPE----APPA-LLLGHT---REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CceEeccCCCcceeeeeecCcc----CChh-hhhCcc---eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 9999999999999999999842 3333 555887 89999999874 666666799999999997653
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=168.38 Aligned_cols=255 Identities=10% Similarity=0.013 Sum_probs=185.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
-.++.|++.|.+||.|..||.|.|||+.+ ...-+ .+.+|..+|.+++||+||+.|+++|.|..+.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl---- 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----FRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL---- 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc----cchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEec----
Confidence 66899999999999999999999999983 32222 34579999999999999999999999999999966
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCE-EEEEeCCeEEEEeCCCCcEEEEecCC------
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH-LFSASGGKISIFSLETFQTLATFANP------ 544 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~-l~s~sdg~I~iwd~~~~~~~~~~~~~------ 544 (701)
..|.++.. + ...++|+...|. .+. +++--+..-.+.++..++ +++-..
T Consensus 95 -----------------~~gs~l~r-i--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 95 -----------------LKGSPLKR-I--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDL 152 (405)
T ss_pred -----------------cCCCceeE-E--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccc
Confidence 44443332 2 256788888888 223 333335545555554422 222111
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC----C
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG----W 618 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~----g 618 (701)
.....+..|++.| +|++|...|.+.++|..+.+++..++-.. ..|..+.++..|++|+..+.|..||.|+++. |
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 1122444688999 99999999999999999999998887655 6889999999999999999999999999873 1
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee-----eeEEEEEe
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQ 684 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~ 684 (701)
+-....+.+++..- .+...-.+++||.||.++++| .-..++||.-..|.+++.+.| ...+.|.|
T Consensus 233 r~~e~e~~~K~qDv--VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDV--VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred ccCCcChhHHHHHH--HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 10011111111100 001334678999999999986 466799999999999999998 44555543
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7.1e-20 Score=201.59 Aligned_cols=244 Identities=16% Similarity=0.218 Sum_probs=189.9
Q ss_pred eEEEEEcCCCCe----EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEe
Q 005342 395 SRESTSLPDADS----AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~----l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd 469 (701)
.+.++|.+.|.. ||.|..||.|.+||.......+....+ .....|.+.|..+.|++.+. .+++|+.||.|.|||
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-hhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 678999998876 888999999999999754222221111 13456999999999999766 899999999999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
+...+. -... -.......|.+++|+ .+.|++++ +|.+.|||++..+.+-.+..+.
T Consensus 146 lnn~~t------------------P~~~---~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 146 LNKPET------------------PFTP---GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred cCCcCC------------------CCCC---CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC
Confidence 844221 0000 011345789999999 77889998 8999999999888777776553
Q ss_pred C--CeEEEEEcCCC--eEEEEeCCC---cEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC
Q 005342 546 P--IATYFILLPQD--LFAFGFDDS---SILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 546 ~--~i~~l~~spdg--~l~~gs~dg---~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~ 616 (701)
. .+..++|+|++ .++++++|. .|.+||++. ...++++++|...|.++.|++ |..+|+|++.|++|.+|+.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 3 46899999999 777777765 799999886 457788899999999999999 45899999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EEE-EecCeEEEEECCCCc
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEGQIDVYEAPTLN 669 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~s-g~Dg~I~iwd~~~g~ 669 (701)
+|+. +.++.... .++..+.|+|...- +++ +-||.|.|+.+.++.
T Consensus 285 tgEv-----l~~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEV-----LGELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceE-----eeecCCCC----cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9863 33344433 88999999998774 444 489999999997654
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5.6e-19 Score=176.15 Aligned_cols=277 Identities=14% Similarity=0.107 Sum_probs=194.3
Q ss_pred ccCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccc-cCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCC
Q 005342 389 FNDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTA 463 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~-~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg 463 (701)
.+-|.. |.+++|+|.. +.+|+|+.-|.|-+||+.. .+....... +..|..+|.++.|+|.. ..+++.|.||
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----FTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----eccCCccccceEecCCChhheeeeccCc
Confidence 345666 9999999975 4788899999999999941 111111222 23588999999999954 5789999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE-EE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT-LA 539 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~-~~ 539 (701)
+|+.-|++.... ..+.. . ......+.++.++ ...++.+. =|...+||++++.. ..
T Consensus 258 tiR~~D~~~~i~------------------e~v~s--~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 258 TIRLQDFEGNIS------------------EEVLS--L-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred eeeeeeecchhh------------------HHHhh--c-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence 999998744311 01111 0 0123455667777 44556666 37999999998764 66
Q ss_pred EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 540 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
.+.-|...|++++++|.. ++|+++.|++.+|||++.-. .+..+ .|...|+++.|||++-.|+|.+.|+.|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEE
Confidence 667788899999999998 99999999999999998632 13333 49999999999997777999999999999
Q ss_pred EECC----CCeeeeeeeee-eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee--eeEEEEEe
Q 005342 613 WDAV----GWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL--ISHIMFVQ 684 (701)
Q Consensus 613 wd~~----~g~~~~~~~l~-~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~ 684 (701)
||.. .-++. ..+. +-..+.. -......|.|+..++++| .-..|-|+|-..|+.+..+-. .+.+ |
T Consensus 396 ~dss~~sa~~~p~--~~I~Hn~~t~Rw---lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI---~ 467 (498)
T KOG4328|consen 396 FDSSCISAKDEPL--GTIPHNNRTGRW---LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTI---P 467 (498)
T ss_pred eecccccccCCcc--ceeeccCccccc---ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccc---c
Confidence 9984 21111 1111 0111111 234467899999999998 677799999988887777655 2222 4
Q ss_pred eEEeeeecceEEEEe
Q 005342 685 IVVKFHSFKFFYVAV 699 (701)
Q Consensus 685 ~~~~f~~~~~~~~~~ 699 (701)
+...||..+...+|-
T Consensus 468 ~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 468 SVNEFHPMRDTLAAG 482 (498)
T ss_pred cceeecccccceecc
Confidence 555667766544443
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=171.19 Aligned_cols=251 Identities=17% Similarity=0.153 Sum_probs=175.3
Q ss_pred cCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccC----CCCc-e----eEeecCCCCCCCCEEEEEEecCCC-EE
Q 005342 390 NDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLIN----EPSE-C----RTLLLPDNSFGGRVVRLIYSHSGD-FL 456 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~----~~~~-~----~~l~~~~~~~~~~v~~l~~spdg~-~l 456 (701)
-+|.+ ++.+.-++-| .+.|+-+..|.|+||++.... ..+. . ..-.+++.+|...-+++.|||-.. .+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35666 7777776654 466666788999999986321 0000 0 000123457888889999999322 37
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSL 532 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~ 532 (701)
++|..-+.|++|...++. |.... ..+ .+|...|-.++|| ...+++|+ ||+|+|||+
T Consensus 228 lsGDc~~~I~lw~~~~g~--------------W~vd~-----~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS--------------WKVDQ-----RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred ccCccccceEeeeeccCc--------------eeecC-----ccc-cccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 888888899999653332 11111 112 3699999999999 77899999 999999999
Q ss_pred CCCc---EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CceEEeecCCCCCeEEEEEec-CCCEEEEE
Q 005342 533 ETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---KKTKAKLKGHQNRITCLAYSL-SLNVLVSS 604 (701)
Q Consensus 533 ~~~~---~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~ 604 (701)
+.+. ++.+ +.|.+.|+.|.|+.+. +||+|+.||+++|||++. ++++..|+.|+.+|+++.|+| +...|+++
T Consensus 288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 9883 3433 6799999999999999 999999999999999986 567889999999999999999 45688889
Q ss_pred eCCCeEEEEECCCCee------eeeeeeee----ccCCCCCCCCCeEEEEEcCCCC-EEEE-EecCeEEEE
Q 005342 605 GADAQLCVWDAVGWKK------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVY 663 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~------~~~~~l~~----~~~~~~~~~~~v~~v~~spdg~-~l~s-g~Dg~I~iw 663 (701)
|.|.+|.+||+....- .....+.. +..-|. .+..+-.+.|++.-. ++++ +.|| +.||
T Consensus 367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9999999999875321 00011110 111121 125678899998743 3343 4566 3444
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.6e-19 Score=175.58 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=200.6
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLD 376 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~ 376 (701)
.++++||...-...-.+..|+.......+.|+.. +.|..+++|.-... +.... ....|.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~--------~k~~gd--- 80 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV--------RKLTGD--- 80 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee--------eccccc---
Confidence 6788999876655555555554433337888776 78899998853221 11111 001111
Q ss_pred cccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 377 ASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 377 ~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
...| |.+..++ .|+++|+..+.|+|||+. ...|++ ...+|...|+++.++-...||
T Consensus 81 --------~~~C------v~~~s~S---~y~~sgG~~~~Vkiwdl~----~kl~hr---~lkdh~stvt~v~YN~~Deyi 136 (673)
T KOG4378|consen 81 --------NAFC------VACASQS---LYEISGGQSGCVKIWDLR----AKLIHR---FLKDHQSTVTYVDYNNTDEYI 136 (673)
T ss_pred --------hHHH------Hhhhhcc---eeeeccCcCceeeehhhH----HHHHhh---hccCCcceeEEEEecCCccee
Confidence 0111 4444444 899999999999999997 455555 445789999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSL 532 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~ 532 (701)
++++..|.|.|..+.++ .-.+ .+..+....|.-+.++ ...|.+++ +|.|.+||.
T Consensus 137 Asvs~gGdiiih~~~t~---------------------~~tt-~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTK---------------------QKTT-TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred EEeccCCcEEEEecccC---------------------cccc-ceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 99999999999966443 2111 1222334456677888 44566677 799999999
Q ss_pred CCCcEEEEe-cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342 533 ETFQTLATF-ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (701)
Q Consensus 533 ~~~~~~~~~-~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~ 609 (701)
....++..+ ..|..+...|+|+|.. ++++.+.|..|.+||.+.......+. ...+...++|+++|.+|+.|+..|.
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCce
Confidence 776665544 5688899999999998 89999999999999999887777665 4567999999999999999999999
Q ss_pred EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
|+.||++.-+ .++. +...|. ..|++++|-|..
T Consensus 274 ~i~YD~R~~k----~Pv~-v~sah~---~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTK----APVA-VRSAHD---ASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCC----CCce-Eeeecc---cceeEEEeeecc
Confidence 9999999842 4444 222454 789999998764
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=177.47 Aligned_cols=243 Identities=10% Similarity=0.098 Sum_probs=194.1
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
.++.++|...|.++.++++|.+.|. |++|+.| +.|..|.+|+.+-.-.+++
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVy--cVAys~dGkrFASG~aDK~VI~W~~klEG~LkY-------------------- 90 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVY--CVAYAKDGKRFASGSADKSVIIWTSKLEGILKY-------------------- 90 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEE--EEEEccCCceeccCCCceeEEEecccccceeee--------------------
Confidence 7788999999999999999999999 9999999 8999999998765554554
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
.|++ |.|+.|+|-...|++|+- ...-+|...+ ....+. ....+|.+++|..||.+++.
T Consensus 91 -----------SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~q----K~V~K~-----kss~R~~~CsWtnDGqylal 149 (1081)
T KOG1538|consen 91 -----------SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQ----KSVSKH-----KSSSRIICCSWTNDGQYLAL 149 (1081)
T ss_pred -----------ccCCeeeEeecCchHHHhhhcch-hhccccChhh----hhHHhh-----hhheeEEEeeecCCCcEEEE
Confidence 6888 999999999999999987 4567888762 211111 13578999999999999999
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-------CCEEEEEe-CCeEEEE
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIF 530 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~l~s~s-dg~I~iw 530 (701)
|-.||+|.+-+-... +.+ .+. -+.+...+|.+++|+ ...+++.. +.++.+|
T Consensus 150 G~~nGTIsiRNk~gE------------------ek~-~I~--Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGE------------------EKV-KIE--RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred eccCceEEeecCCCC------------------cce-EEe--CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 999999998753211 111 111 225678899999998 34677777 7888888
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~ 609 (701)
.+ +|+.+..-..-.-...|+.+-++| +++.|+.|+.+++|- +.|-.+.++-....+|+.++..|++++++.|+.||+
T Consensus 209 ~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 209 QL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred Ee-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 88 566665444344456799999999 999999999999997 667777777667789999999999999999999999
Q ss_pred EEEEEC
Q 005342 610 LCVWDA 615 (701)
Q Consensus 610 I~vwd~ 615 (701)
|-.|++
T Consensus 287 iACyNl 292 (1081)
T KOG1538|consen 287 IACYNL 292 (1081)
T ss_pred eehhhh
Confidence 999986
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.1e-18 Score=174.91 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=197.2
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE-EEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF-LVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~ 466 (701)
++||.+ |.+++..|.|.+|++|+.||+|+||.+. +++|..... ..+.|.|++|+|.+.. +++.+..+.+.
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEee----cceEEEEEe----ecceeEEEEecCCCCceeEEEEecCceE
Confidence 789999 9999999999999999999999999999 888866331 2568999999998863 34444444566
Q ss_pred EEecCCCCc----ccccccc--------ceeeEEeeCCCC---e---EEeecccCCCCCCeEEEEec--CCEEEEEe-C-
Q 005342 467 LWKWQSNKQ----SLEEENV--------NMESQLYQPSSK---L---VMTNDIAADPKDSISCFALR--GSHLFSAS-G- 524 (701)
Q Consensus 467 vwd~~~~~~----~~g~~~~--------~~~i~~~d~~~~---~---~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d- 524 (701)
+-+..-+.. ......+ ...+..|...+. + ++. + .|...|..+.|+ |.||++.. +
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~--I--~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV--I--KHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE--E--ecCCccceeeeecCCceEEEeccCC
Confidence 666544422 0000001 112456664421 1 221 2 478899999999 99999876 3
Q ss_pred --CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE
Q 005342 525 --GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 525 --g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l 601 (701)
..|.|.++...+....|....+.+.++.|+|.. ++++++. ..|+|||+..+.+++++......|..++.+|.|.-|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 679999998777666776667889999999999 7777665 579999999998888887777789999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
+.|+.|+.++.+|+.-+. ++.+++. .|. ..+++|+|++.-.++++| .||++.|+.-
T Consensus 623 i~gs~d~k~~WfDldlss----kPyk~lr-~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS----KPYKTLR-LHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EEecCCCeeEEEEcccCc----chhHHhh-hhh---hhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999998853 4555333 555 899999999999999997 7899988853
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=5.8e-19 Score=186.32 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=175.7
Q ss_pred eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~ 472 (701)
...+.|+. +.++||+++..|.|.+||+... .+-..+. .+..|...+.++.|++.. .+|++||.||.|+.||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~---~rnk~l~-~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS---IRNKLLT-VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc---ccchhhh-HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 33466753 5679999999999999999731 1111111 345699999999999854 5788999999999998854
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPI 547 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~ 547 (701)
.. .. .+ + .+....|.++.|+ +..++++. .|.+.+||++.. ++...+..|.++
T Consensus 166 ~~-------------------S~-~t--~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp 222 (839)
T KOG0269|consen 166 KK-------------------SK-ST--F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP 222 (839)
T ss_pred cc-------------------cc-cc--c-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc
Confidence 31 11 11 2 2356689999999 78899998 699999999864 467788899999
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCC-EEEEEeC--CCeEEEEECCCCeeee
Q 005342 548 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLN-VLVSSGA--DAQLCVWDAVGWKKLC 622 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~-~l~s~s~--D~~I~vwd~~~g~~~~ 622 (701)
|.|+.|+|++ +||+|+.|+.|+|||+.+.+.-....- ...+|.+|.|-|+.+ .||+++. |..|+|||++..
T Consensus 223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP---- 298 (839)
T KOG0269|consen 223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP---- 298 (839)
T ss_pred eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc----
Confidence 9999999999 999999999999999986544322222 345899999999765 6777664 889999999973
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEE-EecCeEEEEECCCCc
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLN 669 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~s-g~Dg~I~iwd~~~g~ 669 (701)
-.+..++. .|. ..++.++|-. |...+.+ +.||+|..-.++++.
T Consensus 299 YIP~~t~~-eH~---~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 299 YIPYATFL-EHT---DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cccceeee-ccC---ccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 12333233 454 8889999965 3344555 378877655554443
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=5.1e-18 Score=175.60 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=178.2
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
.....|.+.|. .+.|-|. +.|.++++||+.++.+... ..+.||.
T Consensus 94 k~~~aH~nAif--Dl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~---------------------------~~~~GH~ 144 (720)
T KOG0321|consen 94 KKPLAHKNAIF--DLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG---------------------------RLNLGHT 144 (720)
T ss_pred cccccccceeE--eeccCCCceeEEEccCCceeeeeeeccceeecc---------------------------eeecccc
Confidence 45567999999 9999998 8999999999998876654 1235888
Q ss_pred c-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCC---ce--------------eEee---cCCCCCCCCEEE---EE
Q 005342 394 Q-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPS---EC--------------RTLL---LPDNSFGGRVVR---LI 448 (701)
Q Consensus 394 ~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~---~~--------------~~l~---~~~~~~~~~v~~---l~ 448 (701)
. |.+++|+|+. ..|++|+.||.|.|||+....... .+ ..+. -.-..+...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 8 9999999965 578899999999999986321000 00 0000 000134455665 66
Q ss_pred EecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342 449 YSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (701)
Q Consensus 449 ~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d 524 (701)
+..|...|++++. |+.|+|||+.......-..-. ....+.+ .......+.++..+ |.++.+.+ |
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---------~~~~~~t---~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---------GSDKYPT---HSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCC---------cccCccC---cccceeeeEEEEecCCCCeEEEEecC
Confidence 7788889999988 999999999776431100000 0000000 00112356677776 77766655 9
Q ss_pred CeEEEEeCCCCc--EEEEecCCCCC--eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecC-
Q 005342 525 GKISIFSLETFQ--TLATFANPPPI--ATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLS- 597 (701)
Q Consensus 525 g~I~iwd~~~~~--~~~~~~~~~~~--i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spd- 597 (701)
+.|++||+.+.. .+..+.++... -..-..+||+ ++++|+.|...++|.+.+.+ ....+.||...|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999997643 34444443221 1233578999 99999999999999998754 35567799999999999983
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q 005342 598 LNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g 618 (701)
-.-++++++|.+++||++..+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCceeeccCcceEEEeccCc
Confidence 335777899999999999765
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.3e-18 Score=169.45 Aligned_cols=237 Identities=15% Similarity=0.154 Sum_probs=176.4
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCceeEe--------------ecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEE
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSECRTL--------------LLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLW 468 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l--------------~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vw 468 (701)
|+++|.|+.|..|.|||+.-...-..+..+ .....+|+..|.+++|...-+ .|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 689999999999999998632211111111 011236888888999987644 67888999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE-EEecC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL-ATFAN 543 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~-~~~~~ 543 (701)
|+ .+|++... + ..|...|.++.|. +.++++|+ |+++.+.|.+..... ..+.
T Consensus 272 D~---------------------~~g~p~~s-~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk- 327 (463)
T KOG0270|consen 272 DV---------------------DTGKPKSS-I-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK- 327 (463)
T ss_pred Ec---------------------CCCCccee-h-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-
Confidence 66 55554432 2 4688999999999 88999999 999999999842211 1222
Q ss_pred CCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCe
Q 005342 544 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 544 ~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~ 619 (701)
..+.|-.++|.|.. .+++++.||+++-+|+|.. +++.+++.|.++|.++++++. ..+++|+|.|+.|++|++....
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 34678999999998 8889999999999999974 899999999999999999985 4588999999999999998743
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCcee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~ 671 (701)
... .. .|.-.-+...|.++.|+-.++++ | ..+.++|||+.+...+
T Consensus 408 ~~~---v~----~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 408 PKS---VK----EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred Ccc---cc----cccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 211 11 11100134567788888665554 5 6778999999877654
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=167.89 Aligned_cols=213 Identities=16% Similarity=0.255 Sum_probs=154.4
Q ss_pred CCCCCEEEEEEecCCC--EEEEEECCCcEEEEecCCCCcc-ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec
Q 005342 439 SFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 515 (701)
Q Consensus 439 ~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~-~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s 515 (701)
.|.+.+..+.-++-|+ +.++-+..|.|.||++...... .... ..+-+.....+.+ + .+|...=+.++||
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~-----~~~~~s~~~Pl~t--~-~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG-----LEVKDSEFRPLFT--F-NGHKGEGYGLDWS 220 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc-----ccccccccCceEE--e-cccCccceeeecc
Confidence 4666677776666554 4445556799999998443220 0000 0000111111332 2 4788888899999
Q ss_pred ---CCEEEEEe-CCeEEEEeCCCCcE---EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC---ceEEeec
Q 005342 516 ---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK---KTKAKLK 583 (701)
Q Consensus 516 ---~~~l~s~s-dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~---~~~~~l~ 583 (701)
-..+++|. -+.|++|...+|.- ...+.+|...|-.++|||.. .+++||.||+|+|||++.+ ..+.+ +
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 45677877 78999999988752 34567899999999999988 9999999999999999988 34444 6
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEE
Q 005342 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQID 661 (701)
Q Consensus 584 ~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~ 661 (701)
.|.+.|+.+.|+.+-.+||+|++||+++|||++.-+ ...++..+. .|. .+|++|.|+|.. ..|++ |.|.+|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--~~~pVA~fk-~Hk---~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--SGQPVATFK-YHK---APITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc--CCCcceeEE-ecc---CCeeEEEeccccCceEEeccCCCcEE
Confidence 799999999999988899999999999999999743 223444333 444 899999999963 44444 6999999
Q ss_pred EEECC
Q 005342 662 VYEAP 666 (701)
Q Consensus 662 iwd~~ 666 (701)
|||+.
T Consensus 374 iWDls 378 (440)
T KOG0302|consen 374 IWDLS 378 (440)
T ss_pred EEEee
Confidence 99984
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2.5e-17 Score=155.24 Aligned_cols=256 Identities=14% Similarity=0.173 Sum_probs=182.5
Q ss_pred ccCCCc-eEEEEEcCCC-CeEEEEcCC-------CcEEEEeccccCCCCceeEe---ecCCCCCCCCEEEEEEecCCCEE
Q 005342 389 FNDNNQ-SRESTSLPDA-DSAVCAKSL-------EKSVNLKLQLINEPSECRTL---LLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg-~~l~s~s~d-------~~v~iw~~~~~~~~~~~~~l---~~~~~~~~~~v~~l~~spdg~~l 456 (701)
|..|.+ ||.++-+|.. +.|+++..+ ..+.||.+.+...+.....+ ..-...+-+.|.|+.|.|++..+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 556777 9999999954 556665442 24679998754333211111 10111345689999999999988
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEeCCeEEEEeC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSL 532 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~sdg~I~iwd~ 532 (701)
++-. |..|.+|+++..... ...+... ...++....++-+|+ |+.+++.+|+++..||+
T Consensus 139 asm~-dn~i~l~~l~ess~~----------------vaev~ss-~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKI----------------VAEVLSS-ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDL 200 (370)
T ss_pred EEec-cCceEEEEcccCcch----------------heeeccc-ccccccceecccccCCCCccceEEEeCCCcEEEEEc
Confidence 7755 889999988543210 0001100 111344566777787 78899999999999999
Q ss_pred CCCcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEec-CCCEEEEEeCC
Q 005342 533 ETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD 607 (701)
Q Consensus 533 ~~~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D 607 (701)
++.+....+. .|...+..+.|+|+- +|+++++||.|++||.+. ..+++++.+|...|++|.|+| ..+++.|||.|
T Consensus 201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 9988776664 678889999999998 999999999999999885 567899999999999999999 45688999999
Q ss_pred CeEEEEECCCCe--e-----------------eeeeee-----eeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEE
Q 005342 608 AQLCVWDAVGWK--K-----------------LCSKFL-----HSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQID 661 (701)
Q Consensus 608 ~~I~vwd~~~g~--~-----------------~~~~~l-----~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~ 661 (701)
..|.+|...+-. . ...+++ .++. . |+..|++++||.-..++.++ .||.+.
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd-e---hEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD-E---HEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc-c---cccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999865411 0 001111 1111 2 33899999999988888774 799998
Q ss_pred EEECC
Q 005342 662 VYEAP 666 (701)
Q Consensus 662 iwd~~ 666 (701)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87664
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=8.4e-18 Score=174.04 Aligned_cols=262 Identities=15% Similarity=0.134 Sum_probs=200.6
Q ss_pred ceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEc
Q 005342 329 WWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSL 401 (701)
Q Consensus 329 ~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~s 401 (701)
.|. .++|-|| ..+..+.+||+..|..+.+ |++|.+ |.+++|+
T Consensus 14 ci~--d~afkPDGsqL~lAAg~rlliyD~ndG~llqt-----------------------------LKgHKDtVycVAys 62 (1081)
T KOG1538|consen 14 CIN--DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQP-----------------------------LKGHKDTVYCVAYA 62 (1081)
T ss_pred chh--eeEECCCCceEEEecCCEEEEEeCCCcccccc-----------------------------cccccceEEEEEEc
Confidence 677 9999999 7788999999999987776 367888 9999999
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
.||+.+|+|+.|+.|.+|+.. -.-..+. .|.+.|.|+.|+|-...+++++-+ ..-+|
T Consensus 63 ~dGkrFASG~aDK~VI~W~~k----lEG~LkY-----SH~D~IQCMsFNP~~h~LasCsLs-dFglW------------- 119 (1081)
T KOG1538|consen 63 KDGKRFASGSADKSVIIWTSK----LEGILKY-----SHNDAIQCMSFNPITHQLASCSLS-DFGLW------------- 119 (1081)
T ss_pred cCCceeccCCCceeEEEeccc----ccceeee-----ccCCeeeEeecCchHHHhhhcchh-hcccc-------------
Confidence 999999999999999999975 2222221 389999999999999999888763 34556
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec---CCCCCeEEEEEcC
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLP 555 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp 555 (701)
.++...+.. ......+.+.+|. |++++.|- +|+|.+-+- +++....+. |..++|.+++|+|
T Consensus 120 --------S~~qK~V~K----~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p 186 (1081)
T KOG1538|consen 120 --------SPEQKSVSK----HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNP 186 (1081)
T ss_pred --------ChhhhhHHh----hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecC
Confidence 333333321 1234577888888 99999998 999999875 444433333 4678999999998
Q ss_pred CC------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 556 QD------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 556 dg------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
.. .+++.....++..|.+. |+.+..-+.-.-...|+.+-|+|.++..|+.|+.+.+|-.+.- .+.++
T Consensus 187 ~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv------rLGTv 259 (1081)
T KOG1538|consen 187 SSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV------RLGTV 259 (1081)
T ss_pred CCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe------EEeec
Confidence 64 78888888999998864 5555533333334568889999999999999999999976652 22222
Q ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
- ... ..|+.++..|+++.++.| .||+|.-|++...
T Consensus 260 g-~~D---~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 260 G-EQD---SWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred c-ccc---eeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 1 222 899999999999999997 8999999987543
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=1.7e-17 Score=165.67 Aligned_cols=291 Identities=16% Similarity=0.168 Sum_probs=208.4
Q ss_pred cccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCC
Q 005342 312 PSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDD 382 (701)
Q Consensus 312 wd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~ 382 (701)
.|+..-+.....+-+.+.|. +++|+|. ..-|+|-+||+.+...-..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit--~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d----------------------- 225 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRIT--SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD----------------------- 225 (498)
T ss_pred cccccceecceeEecccceE--EEEecccCcceEEEEccCCCcEEEEecCCCCCccC-----------------------
Confidence 45555666777788899999 9999998 6789999999963222111
Q ss_pred CCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 383 SNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 383 ~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
....+..|.. |+++.|+|. ...+++.+.||+|+.-|++ .+....+ +...........+.|+.+...++.+.
T Consensus 226 --~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~----~~i~e~v-~s~~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 226 --GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE----GNISEEV-LSLDTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred --ceEEeccCCccccceEecCCChhheeeeccCceeeeeeec----chhhHHH-hhcCccceeeeeccccCCCccEEEee
Confidence 1222557877 999999995 4688999999999999997 3322221 11112345567788888888888888
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
.=|...+||.+++. .+.... .-|...|.+++++ ..++++++ |++.+|||++...
T Consensus 299 ~~G~f~~iD~R~~~-----------------s~~~~~-----~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDG-----------------SEYENL-----RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred cccceEEEEeecCC-----------------ccchhh-----hhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 87899999875431 111111 2477799999999 77899999 9999999987532
Q ss_pred E-----EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----CCceEEeecCCCC------CeEEEEEecCCCE
Q 005342 537 T-----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----TKKTKAKLKGHQN------RITCLAYSLSLNV 600 (701)
Q Consensus 537 ~-----~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~----~~~~~~~l~~h~~------~V~~v~~spdg~~ 600 (701)
. +.++ .|...|.+..|||++ .|++.+.|..|+|||.. ...+..++. |.. .....+|.|+..+
T Consensus 357 ~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~l 434 (498)
T KOG4328|consen 357 GKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNL 434 (498)
T ss_pred CCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccE
Confidence 1 3444 489999999999999 99999999999999973 233333333 321 2345689999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 601 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
+++|-.-..|-|+|-..++.++. + |.+....|.+ ..|+|-+..+++| ..|.|+||--.
T Consensus 435 i~vg~~~r~IDv~~~~~~q~v~e--l------~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 435 IVVGRYPRPIDVFDGNGGQMVCE--L------HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEEeccCcceeEEcCCCCEEeee--c------cCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99999999999999999764432 1 1111134444 4799998867774 67888888654
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=159.11 Aligned_cols=262 Identities=16% Similarity=0.184 Sum_probs=187.9
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCC----CCc-----eeEeecCCCCCCCCEEEEEEe-------cCCCEEEEE
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINE----PSE-----CRTLLLPDNSFGGRVVRLIYS-------HSGDFLVAL 459 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~----~~~-----~~~l~~~~~~~~~~v~~l~~s-------pdg~~l~s~ 459 (701)
....|+|||..|.+-+.|..+.+|++....- .+. ...+.. .....|...+|- |+..++++.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~---~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY---QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe---ccCCEEEEEEeeeccccCCCccceeeec
Confidence 3578999999999999999999999852110 000 011111 123556666664 677888999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeC-CCCc
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSL-ETFQ 536 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~-~~~~ 536 (701)
+.+.-|++||.-+ |+..+++. .||.. ..-....+++|+ |..|++|....|+++|+ +.|+
T Consensus 130 sr~~PIh~wdaft-----G~lraSy~--~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-----GKLRASYR--AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred cccCceeeeeccc-----cccccchh--hhhhH-----------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 9999999997633 22222211 11100 011244589999 99999998999999999 5565
Q ss_pred EEE---Ee----cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-
Q 005342 537 TLA---TF----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA- 606 (701)
Q Consensus 537 ~~~---~~----~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~- 606 (701)
.-. ++ .+..+-|.+++|+|.. .+++|+....+-||.-..+.++..+-||.+.|+.+.|.++|+.|.+|+.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 222 11 1235668999999988 9999999999999988888999999999999999999999999999876
Q ss_pred CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE--EEcCCCCEEEEE-ecCeEEEEECCC-Cceeeeeee----ee
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI--QFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQVLL----IS 678 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v--~~spdg~~l~sg-~Dg~I~iwd~~~-g~~~~~l~~----i~ 678 (701)
|..|-.||++... .++..+. .|.. ..-..| ...|+|++|++| .||.|++||+.+ |..+..+.. ++
T Consensus 272 ~dkIl~WDiR~~~----~pv~~L~-rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 272 DDKILCWDIRYSR----DPVYALE-RHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred CCeEEEEeehhcc----chhhhhh-hhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 7799999999742 3333233 3321 122344 446889999998 899999999988 776666655 88
Q ss_pred EEEEEee
Q 005342 679 HIMFVQI 685 (701)
Q Consensus 679 ~~~fs~~ 685 (701)
++++.|+
T Consensus 345 gvslnP~ 351 (406)
T KOG2919|consen 345 GVSLNPI 351 (406)
T ss_pred ceecCcc
Confidence 8888776
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.6e-17 Score=148.49 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=179.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
|.+-+|+|.+++|+.|+.+|.|.+..+..... .++.. .+++.+|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~--iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK--IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc--eeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 66678999999999999999999999875432 22211 13557899999999998 34566655 49999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEEecCCCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
++......+. -++|....-... .. ..-..|+++... ++.+.+|+|+.++-||+++|+..+++++|..
T Consensus 88 W~E~~es~~~------K~lwe~~~P~~~--~~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 88 WNEEEESLAT------KRLWEVKIPMQV--DA--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ehhhhhhccc------hhhhhhcCcccc--Cc--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 7554321100 112221111100 00 112356777666 6677777799999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC---------CCC-CeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---------HQN-RITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~---------h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
.+.+++-.... .|++|++||++++||.++++.++.+.. |.+ .|-+++- +..++++|+. ..+.+|++
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhL 234 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHL 234 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEec
Confidence 99999885555 999999999999999999998887653 222 3444444 5668886654 58999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
++.+..+..++. ..+..+.|-.| ..++.|..+.+.-|.+ +|.+-...++
T Consensus 235 rsse~t~vfpip----------a~v~~v~F~~d-~vl~~G~g~~v~~~~l-~Gvl~a~ip~ 283 (325)
T KOG0649|consen 235 RSSESTCVFPIP----------ARVHLVDFVDD-CVLIGGEGNHVQSYTL-NGVLQANIPV 283 (325)
T ss_pred cCCCceEEEecc----------cceeEeeeecc-eEEEeccccceeeeee-ccEEEEeccC
Confidence 998877777776 77888888644 3444456667888887 5666555554
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=2.7e-17 Score=157.79 Aligned_cols=236 Identities=15% Similarity=0.199 Sum_probs=173.1
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVN 418 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~i 418 (701)
+.-|.|+|-|+.++++... +.+|.. |+.+.++|+. +++++||.|.+|++
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 5567788888877766555 357888 9999999975 68999999999999
Q ss_pred EeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc----------cccc---ccee
Q 005342 419 LKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL----------EEEN---VNME 485 (701)
Q Consensus 419 w~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~----------g~~~---~~~~ 485 (701)
|+++ +..|..+---..+|.+.|.++.|+++|.+|++++.|.++++|++...+... .+.. ....
T Consensus 163 wnI~----~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 163 WNIQ----TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred Eecc----CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 9998 778877655567899999999999999999999999999999997544300 0000 0000
Q ss_pred eEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeC-CCCc-------------EEEEecCCCCCeEE
Q 005342 486 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSL-ETFQ-------------TLATFANPPPIATY 550 (701)
Q Consensus 486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~-~~~~-------------~~~~~~~~~~~i~~ 550 (701)
..+.+.. -...|...|.|+.|-|+++++-+ ++.|..|-. +-.+ ...++......|.-
T Consensus 239 ~~fp~fs--------t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 239 THFPDFS--------TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred ccccccc--------ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 1111110 11257788888888899999988 999999986 2111 22334434445555
Q ss_pred EEEc--CCC-eEEEEeCCCcEEEEeCCCCceE--EeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 551 FILL--PQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 551 l~~s--pdg-~l~~gs~dg~I~iwd~~~~~~~--~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+.|+ |-+ .+|.|...|+|++||++...+. .++.. ....|...+|+.||..|+..++|++|.-||..+
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 5554 445 9999999999999999876552 22221 234789999999999999999999999999643
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.6e-18 Score=189.47 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=191.2
Q ss_pred EEEEcCCCC-eEEEE----------cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE----EEEEEC
Q 005342 397 ESTSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQ 461 (701)
Q Consensus 397 ~l~~spdg~-~l~s~----------s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~----l~s~s~ 461 (701)
.++|+|++. ++|+| +.+.++.||.+............. . .....+-..++|.+.|.. |+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~-s-~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVG-S-LQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccc-c-ccccccceeeeecccCCCccceeecccc
Confidence 578999987 55554 335566777765332222111100 0 123567889999998876 677777
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF 535 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~ 535 (701)
||.|.+||.... ..++. ++. -...|.+.|..+.|+ ++.+++|+ ||.|.|||+...
T Consensus 89 dG~I~ly~p~~~-----------------~~~~~~~~la--~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 89 DGNIVLYDPASI-----------------IANASEEVLA--TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred CCceEEecchhh-----------------ccCcchHHHh--hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 999999976321 01222 222 114799999999999 77999999 899999999875
Q ss_pred cEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEecCCC-EEEEEeCCC
Q 005342 536 QTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLN-VLVSSGADA 608 (701)
Q Consensus 536 ~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~-~l~s~s~D~ 608 (701)
+.-.++. ...+.|.+++|+..- .+++++.+|.+.|||++..+.+-.+..|.+ .+..++|+|++. .|+++++|.
T Consensus 150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 5433331 246789999999877 889999999999999999888877776554 478899999754 566666544
Q ss_pred ---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCceeeeeee----eeE
Q 005342 609 ---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISH 679 (701)
Q Consensus 609 ---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~ 679 (701)
.|.+||++.- ..+++ +..+|. .+|.++.|++.+ ++++++ .|+.|.+|+.++|+.+..++. +..
T Consensus 230 ~~PviqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred CCceeEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 6999999873 35555 335776 899999999976 677774 899999999999999999987 788
Q ss_pred EEEEeeEE
Q 005342 680 IMFVQIVV 687 (701)
Q Consensus 680 ~~fs~~~~ 687 (701)
+.|.|..-
T Consensus 302 v~w~pr~P 309 (1049)
T KOG0307|consen 302 VQWCPRNP 309 (1049)
T ss_pred eeecCCCc
Confidence 88866533
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.6e-16 Score=155.92 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=179.8
Q ss_pred eEEEEEcC-----CCCeEEE---EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342 395 SRESTSLP-----DADSAVC---AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH 465 (701)
Q Consensus 395 V~~l~~sp-----dg~~l~s---~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i 465 (701)
|+..+|.. +.+++|. ++..|...+--+.+ .|+.-.-.-...+|.++|..++|+| +...|++||.|.+|
T Consensus 30 Vs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k---~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v 106 (472)
T KOG0303|consen 30 VSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVK---TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV 106 (472)
T ss_pred eeeeeccccccccCCceEEEEEecCCCcceeeccccc---ccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence 45555533 3455554 23334455544442 4433221113468999999999999 45678899999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
.||.+..+. ... ++ + ..+. .+ .+|...|-.++|+ .+.|++++ |.+|.+||..+|+.+-++
T Consensus 107 ~vW~IPe~~-----l~~-------~l-t-epvv-~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l 170 (472)
T KOG0303|consen 107 MVWQIPENG-----LTR-------DL-T-EPVV-EL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL 170 (472)
T ss_pred EEEECCCcc-----ccc-------Cc-c-cceE-EE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec
Confidence 999873321 110 00 1 1111 12 4899999999999 77888887 999999999999988888
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEe---CCCeEEEEECC
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSG---ADAQLCVWDAV 616 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s---~D~~I~vwd~~ 616 (701)
. |...|.+++|+.|| ++++.+.|.+|+|||.++++.+..-.+|.+ .-..+.|-.+|..+-||- .+.++-+||..
T Consensus 171 ~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 171 D-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred C-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 7 99999999999999 999999999999999999999998888887 455667888888544442 47789999988
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCc
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN 669 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~ 669 (701)
.-+ ....+.+++.+ +.|.---|.||.++++. | .|+.|+-|.+.+..
T Consensus 250 nl~--eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 250 NLE--EPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccc--CcceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 732 11223334333 67888889999998886 6 89999999997655
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.2e-16 Score=166.10 Aligned_cols=329 Identities=12% Similarity=0.101 Sum_probs=215.9
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccCCccccccccc-------c----C
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPTVSNLRYASSI-------L----T 365 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~~~~-------~----~ 365 (701)
..|+|+...||.|++.+.+|...+. .+.+.|. +.||+|++||...+..+++++-- + .
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~--s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLT--SVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccc--eeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 6789999999999999999999999 7777776 88999999999998877764110 0 0
Q ss_pred CC-----------CCCC---CCCc---------------------------ccccC------------CCC-C-CC--cc
Q 005342 366 DK-----------PNQE---GRPL---------------------------DASSG------------DDS-N-DS--SC 388 (701)
Q Consensus 366 ~~-----------~~~~---~~~~---------------------------~~s~~------------D~~-~-~~--~~ 388 (701)
++ ..+. .+.. ++.+. +.. . .. ..
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence 00 0000 0000 00000 000 0 00 00
Q ss_pred ------ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc-cCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 389 ------FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 389 ------l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~-~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
-..|.- +.+.++||+++++|+|..||.|.+|.--. ......+..+ +.|...|.+++|++||.+|++||
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEecCCceEeecc
Confidence 124555 88999999999999999999999997542 1122223332 25889999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
..|.+.+|.+.++ ..+++ +.-.++|..+.+| ++..+... |+.|++....+...
T Consensus 271 ~E~VLv~Wq~~T~-------------------~kqfL-----PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 271 REGVLVLWQLETG-------------------KKQFL-----PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred cceEEEEEeecCC-------------------Ccccc-----cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 9999999966332 12222 3456789999999 55555555 99999998766554
Q ss_pred EEEecCC-----------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe------------------------
Q 005342 538 LATFANP-----------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK------------------------ 581 (701)
Q Consensus 538 ~~~~~~~-----------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~------------------------ 581 (701)
..++.+. .+-.+.++++|.- .++..+..|.|.+||+-+.+.+..
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 4444322 2224667777744 666666777777777643221110
Q ss_pred --------------------------------------------ecCCCCCeEEEEEec-CCC-EEEEEeCCCeEEEEEC
Q 005342 582 --------------------------------------------LKGHQNRITCLAYSL-SLN-VLVSSGADAQLCVWDA 615 (701)
Q Consensus 582 --------------------------------------------l~~h~~~V~~v~~sp-dg~-~l~s~s~D~~I~vwd~ 615 (701)
...|...+...++.+ ... ..+++|.||.++||-+
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 113554444444443 333 7889999999999988
Q ss_pred CCCeeeee----eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCC
Q 005342 616 VGWKKLCS----KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 668 (701)
Q Consensus 616 ~~g~~~~~----~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g 668 (701)
.+.+.+.. .....+..-|. .++++.+|+.||..|++|.|++|.|||..+.
T Consensus 487 ~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 44321110 11110111222 7899999999999999999999999999883
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=2.4e-16 Score=150.87 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=189.0
Q ss_pred EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc--eEEEEEc---
Q 005342 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ--SRESTSL--- 401 (701)
Q Consensus 334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~--V~~l~~s--- 401 (701)
.+.|||| +.|+.+.+|++...-.-.. . .+. ..++ ....++-..+ |..-+|-
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~--------~--~~~-~~~~------~~~~~r~~eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK--------A--DGP-LNFS------KHLSYRYQEGETVYDYCWYSRM 116 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccC--------C--CCc-cccc------cceeEEeccCCEEEEEEeeecc
Confidence 6789999 8999999999864321111 0 000 0000 0000111111 5555553
Q ss_pred ----CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCC---CCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 402 ----PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG---GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 402 ----pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~---~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|+..++|+.+.+.-|++||.- +|+.+. +...-.|. ....+++|+|||.+|++| ..+.|+++|....-
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaf----tG~lra-Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpG 190 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAF----TGKLRA-SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPG 190 (406)
T ss_pred ccCCCccceeeeccccCceeeeecc----cccccc-chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCC
Confidence 778899999999999999998 665443 11111132 345689999999997764 56889999872211
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~ 550 (701)
. +...-..+.+ =..+..+-+.+++++ ...+++++ ...+-||.-..+.++..+-+|.+.|+.
T Consensus 191 r--------------~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 191 R--------------DCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred C--------------CCcchhhhhc-ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 0 0000000100 001346778899999 55889998 888999988888899999999999999
Q ss_pred EEEcCCC-eEEEEeC-CCcEEEEeCCC-CceEEeecCCCC-CeEEEEE--ecCCCEEEEEeCCCeEEEEECCC-Ceeeee
Q 005342 551 FILLPQD-LFAFGFD-DSSILVHCPCT-KKTKAKLKGHQN-RITCLAY--SLSLNVLVSSGADAQLCVWDAVG-WKKLCS 623 (701)
Q Consensus 551 l~~spdg-~l~~gs~-dg~I~iwd~~~-~~~~~~l~~h~~-~V~~v~~--spdg~~l~s~s~D~~I~vwd~~~-g~~~~~ 623 (701)
+.|.++| .+.+|.. |-.|..||++. +.++..+..|.+ .-..|-| .|++++|++|+.||.|++||+++ |+..
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~-- 333 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV-- 333 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc--
Confidence 9999999 8888776 56999999986 456667777766 4445555 57899999999999999999998 5321
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 658 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg 658 (701)
. ....+. ..|+.++++|--.++|++...
T Consensus 334 ---s-v~~~~s---d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 ---S-VTGNYS---DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---c-cccccc---ccccceecCcccceeeeccCc
Confidence 2 222333 789999999998888886443
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=2.7e-16 Score=155.14 Aligned_cols=288 Identities=14% Similarity=0.095 Sum_probs=190.6
Q ss_pred ceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342 329 WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST 399 (701)
Q Consensus 329 ~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~ 399 (701)
.+. .+.|.++ +.|..|++|-+..+..-.-- ..++- ...|..|.. |+.+.
T Consensus 15 pv~--s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------~~V~y-------------~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 15 PVY--SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------MKVEY-------------LSSLSRHTRAVNVVR 72 (434)
T ss_pred ceE--EEEeccCcccceecccCccceeeeeeeecCCCCCc-------eeEEE-------------eecccCCcceeEEEE
Confidence 355 6677666 78999999988765432210 00000 112668888 99999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCC----C-----CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINE----P-----SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~----~-----~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|+|+|..||+|+.+|.|.+|...+... + .+.+.+.....+|...|..++|+||+.++++++.|+.+++||+
T Consensus 73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 999999999999999999998762111 1 2223333345579999999999999999999999999999965
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-----
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA----- 542 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~----- 542 (701)
..|++.. ...+|...+..++|. ++++++-+ |...+.+.+...+.+....
T Consensus 153 ---------------------~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 153 ---------------------HAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred ---------------------ccceeEe--eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 5666554 225788889999998 88888877 7656666554332221110
Q ss_pred ---C-----------C----CCCeEEEEEcCCC-eEEEEeC----C-----CcEEEEeCCC-CceEEeecCCCCCeEEEE
Q 005342 543 ---N-----------P----PPIATYFILLPQD-LFAFGFD----D-----SSILVHCPCT-KKTKAKLKGHQNRITCLA 593 (701)
Q Consensus 543 ---~-----------~----~~~i~~l~~spdg-~l~~gs~----d-----g~I~iwd~~~-~~~~~~l~~h~~~V~~v~ 593 (701)
. | ..-...++|+|+| ++++... . +..++|+... .++...+.+-..++..+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0 1 1223667899999 7776431 1 2345665432 234445555555555555
Q ss_pred Eec------------------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 594 YSL------------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 594 ~sp------------------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
|+| -+-.+|.++ .+.|+|||.++-+ ++.-+..-|- ..++.++|++||..++.+
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~-----P~~~v~nihy---~~iTDiaws~dg~~l~vS 360 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE-----PLAVVDNIHY---SAITDIAWSDDGSVLLVS 360 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc-----ceEEEeeeee---eeecceeecCCCcEEEEe
Confidence 554 122334444 4689999999843 3332333444 889999999999999875
Q ss_pred -ecCeEEEEECCCCce
Q 005342 656 -HEGQIDVYEAPTLNH 670 (701)
Q Consensus 656 -~Dg~I~iwd~~~g~~ 670 (701)
.||...+-.++..++
T Consensus 361 S~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 361 STDGFCSLVTFEPWEL 376 (434)
T ss_pred ccCCceEEEEEcchhc
Confidence 899877776665554
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.5e-16 Score=168.69 Aligned_cols=277 Identities=13% Similarity=0.167 Sum_probs=191.0
Q ss_pred CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcC--CCCeEEEEcCCCcEEEE
Q 005342 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLP--DADSAVCAKSLEKSVNL 419 (701)
Q Consensus 342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~sp--dg~~l~s~s~d~~v~iw 419 (701)
....|+|||.+.++++.. |..+.. ....|+.+.+-. |..++.+|+.||.|+||
T Consensus 1084 ~r~~i~vwd~e~~~~l~~----------F~n~~~---------------~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNG----------FDNGAF---------------PDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CcceEEEEecccCceecc----------ccCCCC---------------CCCccceeeeecccchhheeeeccCceEEEe
Confidence 356899999999999887 444322 112277777753 56789999999999999
Q ss_pred eccccC-CCCceeEeecCCCC----CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342 420 KLQLIN-EPSECRTLLLPDNS----FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (701)
Q Consensus 420 ~~~~~~-~~~~~~~l~~~~~~----~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~ 494 (701)
+-.... ...+...-..+..+ ..+.-.-+.|-....+|+++|.-..|+|||. ...
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa---------------------~~E 1197 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA---------------------HKE 1197 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec---------------------ccc
Confidence 876322 11111110011111 1111133456666566777666778888865 433
Q ss_pred eEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc---EEEEecCCCCC--eEEEEEcCCC--eEEEEe
Q 005342 495 LVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---TLATFANPPPI--ATYFILLPQD--LFAFGF 563 (701)
Q Consensus 495 ~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~~~~~--i~~l~~spdg--~l~~gs 563 (701)
.++. ++..+....|++++-+ |+.+++|. ||.|++||.+... .+..++.|... |..+.+-+.| .+++|+
T Consensus 1198 ~~~~-diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1198 QVVA-DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred eeEe-ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence 4332 2444566778888777 78899998 9999999987543 46666777666 9999999999 799999
Q ss_pred CCCcEEEEeCCCCceEE--eecCCC--C-CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 564 DDSSILVHCPCTKKTKA--KLKGHQ--N-RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 564 ~dg~I~iwd~~~~~~~~--~l~~h~--~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
.||.|++||++...... ....|. + ..+++..+++...+|+|+. +.|+||++........+.-..+.+... +
T Consensus 1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~---g 1352 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI---G 1352 (1387)
T ss_pred cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcC---C
Confidence 99999999999742222 122233 3 5899999999999999998 999999998753222222222332333 7
Q ss_pred CeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 639 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 639 ~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
.+.|++|+|..-++|+| .|.+|.||...+.+
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 78999999999999998 89999999987654
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.5e-16 Score=148.77 Aligned_cols=246 Identities=15% Similarity=0.204 Sum_probs=172.8
Q ss_pred CCCc-eEEEEEcCCCC-----eEEEEcCCCcEEEEeccccCCCCceeE-ee-cCCCCCCCCEEEEEEec-CCCEEEEEEC
Q 005342 391 DNNQ-SRESTSLPDAD-----SAVCAKSLEKSVNLKLQLINEPSECRT-LL-LPDNSFGGRVVRLIYSH-SGDFLVALTQ 461 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~-----~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~-~~~~~~~~~v~~l~~sp-dg~~l~s~s~ 461 (701)
.|.- ++.+.|.|+.. +|||++. .+++|.+......-++.. +. .....+..++++..|+. |.+++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5666 88899999863 5666554 799999873211111111 11 11224567899999986 5678888888
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
|-+..|||++++ ..+.+.+..+ .|...|.+++|. -+.+++.+ ||.+++||++....
T Consensus 172 DTTCTiWdie~~------------------~~~~vkTQLI--AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 172 DTTCTIWDIETG------------------VSGTVKTQLI--AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cCeEEEEEEeec------------------cccceeeEEE--ecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 999999987443 1222333322 599999999999 35688888 99999999987653
Q ss_pred EEE-ec--CCCCCeEEEEEcCCC--eEEEEeCCC-cEEEEeCCC-CceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCe
Q 005342 538 LAT-FA--NPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQ 609 (701)
Q Consensus 538 ~~~-~~--~~~~~i~~l~~spdg--~l~~gs~dg-~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~ 609 (701)
-.. ++ ....+...++|++.. ++|+-..|+ .|.|.|++. ...+.++++|.+.|+.++|.|. ...|+|+++|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 222 22 224567889999988 777755554 899999987 4678899999999999999995 569999999999
Q ss_pred EEEEECCCCee-eeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEEecCeEEEE
Q 005342 610 LCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVY 663 (701)
Q Consensus 610 I~vwd~~~g~~-~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg~Dg~I~iw 663 (701)
+-+||+...-. -...++-.... ++.|+.+.|+|. +.+++.+.++.+.|.
T Consensus 312 aliWDl~q~~~~~~~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred EEEEecccccccCCCCchhhhhc-----cceeeeeeecccCCCEEEEEecCeeeEE
Confidence 99999987321 00112111111 278999999964 788888766665543
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=3.6e-16 Score=154.24 Aligned_cols=273 Identities=15% Similarity=0.122 Sum_probs=196.0
Q ss_pred CCCceEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 391 DNNQSRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 391 ~h~~V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
.|+.|.++.|.+++. .++||+.|..|++|.++.....+. .......+..|...|.++.|+|+|..+++|+.+|.+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 455599999999887 999999999999999976544442 12222245679999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCC-----C--eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSS-----K--LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~-----~--~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
|....... .+.++ . ..+.+.+ .+|...|..++|+ +.++++++ |+.+++||+..|..
T Consensus 92 Wk~~~~~~-------------~~~d~e~~~~ke~w~v~k~l-r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 92 WKQGDVRI-------------FDADTEADLNKEKWVVKKVL-RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred EEecCcCC-------------ccccchhhhCccceEEEEEe-cccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 97642111 01111 1 1222223 4799999999999 88899999 99999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--------C-----------CC----CCeEEEE
Q 005342 538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------HQ----NRITCLA 593 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--------~-----------h~----~~V~~v~ 593 (701)
...+..|...+..++|.|-+ ++++-+.|...+.+++...+.++... + |. .....++
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 99999999999999999999 99999999877777665433222111 0 21 2456789
Q ss_pred EecCCCEEEEEeC----C-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC----------------
Q 005342 594 YSLSLNVLVSSGA----D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------- 648 (701)
Q Consensus 594 ~spdg~~l~s~s~----D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd---------------- 648 (701)
|+|||.++++.+. + ++.++++-+.- ..+...++... .++..+.|+|-
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccc----cCceeecCCCC----cceEEEEeeeeEEEecccccccccccc
Confidence 9999999987542 2 23456554431 12222132222 44555555551
Q ss_pred --CCEEEEEecCeEEEEECCCCceeeeeee-----eeEEEEEee
Q 005342 649 --QIHLLSIHEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQI 685 (701)
Q Consensus 649 --g~~l~sg~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~ 685 (701)
+-.+|....+.|+|||.++.+++....+ |+.++||++
T Consensus 310 pyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 310 PYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred ccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCC
Confidence 2234456788999999999888887776 999999987
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2.4e-16 Score=157.18 Aligned_cols=251 Identities=10% Similarity=0.109 Sum_probs=170.0
Q ss_pred EEEcCCCCeEEEEcCCC---cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-------CCCEEEEEECCCcEEE
Q 005342 398 STSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHKL 467 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-------dg~~l~s~s~dg~i~v 467 (701)
+..-|+..+++++-.+. .+.+|-.++.. . ..+. ...+ --.....|+.|.. .|+++|.|+.|..|.|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~-nlYv-HHD~-ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEE-E-NLYV-HHDF-ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCC-c-ceeE-ecce-eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45678777777775443 34444443211 1 1111 0000 0123335666642 3679999999999999
Q ss_pred EecCCCCc-----cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE
Q 005342 468 WKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL 538 (701)
Q Consensus 468 wd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~ 538 (701)
||+.--.. ..|...... ....++ ......+|+..|.+++|+ .+.|++|+ |.+|.+||+.++++.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~-----~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~ 279 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKK-----KKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK 279 (463)
T ss_pred eccccccccccceeechhhhhh-----hhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc
Confidence 99843322 111100000 000000 000113788889999998 77899999 999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEE
Q 005342 539 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWD 614 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd 614 (701)
.++..|...|.++.|+|.. .+++|+.|+++.+.|.+.... -..++ -.+.|-.++|.|.. ..++++.+||+++-+|
T Consensus 280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999899999999999998 999999999999999985222 22233 45679999999955 4677888999999999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE-EE-EecCeEEEEECCCC
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-IHEGQIDVYEAPTL 668 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~s-g~Dg~I~iwd~~~g 668 (701)
++... +++.++. .|. .+|.++++++.-+.+ ++ |.|+.+++|++..-
T Consensus 359 ~R~~~----~~vwt~~-AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 359 IRNPG----KPVWTLK-AHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred cCCCC----CceeEEE-ecc---CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 99852 3444343 443 899999999876554 44 48999999999643
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=3.8e-17 Score=167.34 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=183.0
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
+..|.. |+.++|+|-...|++|+.||.+++|++++...... ... -+++.+|.++|.|+++++++..+++|+.||+|
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~ep-i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEP-ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceee-eEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 667888 99999999999999999999999999954222221 111 13456799999999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
+.|++..+.-+.. .+|+.... ..+ .||.+.|+.++++ ...|++++ ||+++.|+...... .+|.
T Consensus 369 ~~w~~p~n~dp~d---------s~dp~vl~---~~l-~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~ 434 (577)
T KOG0642|consen 369 RCWNLPPNQDPDD---------SYDPSVLS---GTL-LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG 434 (577)
T ss_pred eeeccCCCCCccc---------ccCcchhc---cce-eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence 9998753321110 01221111 112 4899999999999 77788888 99999999865544 4444
Q ss_pred CCCCC--eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC-------CCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 543 NPPPI--ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 543 ~~~~~--i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
..... ..++.+-... ..++...-+.-.++++.....+..+.. -...++.+.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 33222 2444444333 233333333444445544444444332 113578889999999999999999999
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
++|..+|+++.... .|. ..++++++.|+|.+|++| .|+.+++|.+....++.
T Consensus 515 ~~dn~~~~~l~s~~------a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 515 FFDNKTGKILHSMV------AHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cccccccccchhee------ecc---ceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999986443222 222 789999999999999997 89999999997666554
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.2e-14 Score=150.86 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=156.3
Q ss_pred eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~ 471 (701)
...++++|++++|+++ ..++.|.+|++.+ .+...... .+ .......++++|+|+++++++. ++.+.+|+++
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~---~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIAD---DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECC---CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 5578999999998765 4578899999862 23322211 11 2235678999999999888876 7999999874
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEE-------E
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA-------T 540 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~-------~ 540 (701)
... ........ + .+.....+++++ |+++++++ ++.|.+||+.+...+. .
T Consensus 111 ~~g-----------------~~~~~~~~-~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 111 KDG-----------------IPVAPIQI-I--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred CCC-----------------CCCCceee-c--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 210 00011110 1 122345667788 77876666 6999999997633221 1
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCC--C--ceEEeecCC------CCCeEEEEEecCCCEEEEEe-CC
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCT--K--KTKAKLKGH------QNRITCLAYSLSLNVLVSSG-AD 607 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~--~--~~~~~l~~h------~~~V~~v~~spdg~~l~s~s-~D 607 (701)
.. .......++|+|+| +++++.. ++.|.+||+.. + +.+..+..+ ......+.++|+|++++++. .+
T Consensus 171 ~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 171 TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 11 23446789999999 7766665 89999999973 3 234443321 12234688999999888875 47
Q ss_pred CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
+.|.+|++...... ...+..+..+ .....+.++|||++|+++ .+++|.+|++.
T Consensus 250 ~~I~v~~i~~~~~~-~~~~~~~~~~-----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 250 SLISVFSVSEDGSV-LSFEGHQPTE-----TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEEEEeCCCCe-EEEeEEEecc-----ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999999653211 1222222222 234578999999999985 58999999874
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=8e-14 Score=150.33 Aligned_cols=309 Identities=20% Similarity=0.281 Sum_probs=220.1
Q ss_pred CcccccccCccc-eeEEEeecCc-ceeeeEEEE-ccC---------CCCCeEEEEeccC-CccccccccccCCCCCCCCC
Q 005342 307 DKLKFPSMDKSR-LLSLIKQIMD-WWVPYCINV-MPN---------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGR 373 (701)
Q Consensus 307 ~~i~iwd~~~~~-~~~~l~~h~~-~v~~~~l~f-spd---------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~ 373 (701)
+.+.+|+...+. ....+..+.. .+. .+.+ +++ ..|+.+.+||... ......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------- 150 (466)
T COG2319 87 GTIKLWDLDNGEKLIKSLEGLHDSSVS--KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-------------- 150 (466)
T ss_pred CcEEEEEcCCCceeEEEEeccCCCcee--eEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------
Confidence 788899988887 7777776443 566 4444 555 4489999999987 333322
Q ss_pred CcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec
Q 005342 374 PLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 451 (701)
Q Consensus 374 ~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp 451 (701)
+..|.. |..++|+|++..+++++. |+.+++|+.. .+.... ...+|...|.+++|+|
T Consensus 151 ---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 151 ---------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR----TGKPLS---TLAGHTDPVSSLAFSP 208 (466)
T ss_pred ---------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC----CCceEE---eeccCCCceEEEEEcC
Confidence 346777 999999999999999986 9999999997 333333 2334889999999999
Q ss_pred CCC-EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342 452 SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 527 (701)
Q Consensus 452 dg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I 527 (701)
++. .+++++.|+.+.+||. ..+......+ .+|.... ...|+ +..+++++ |+.+
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~---------------------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDL---------------------STGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred CcceEEEEecCCCcEEEEEC---------------------CCCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 998 5555588999999965 2333332112 3455553 22666 66777777 9999
Q ss_pred EEEeCCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEE
Q 005342 528 SIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 528 ~iwd~~~~~~-~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s 603 (701)
++||+..... ...+.+|...+.++.++|++ .+++++.|+.+.+||..+........ +|...+..+.|.+++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345 (466)
T ss_pred EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEE
Confidence 9999987664 44556788899999999988 67778888999999998887776665 78888999999434355555
Q ss_pred E-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee----
Q 005342 604 S-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL---- 676 (701)
Q Consensus 604 ~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~---- 676 (701)
+ ..|+.+.+|+..... ...... .. ..+..+.+++ ...+.. + .++.+.+|+............
T Consensus 346 ~~~~d~~~~~~~~~~~~--~~~~~~----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
T COG2319 346 GGSDDGTIRLWDLRTGK--PLKTLE----GH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414 (466)
T ss_pred eecCCCcEEeeecCCCc--eeEEec----CC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc
Confidence 5 688999999999864 111111 11 2388999999 544444 3 789999999988877655543
Q ss_pred eeEEEEEeeEE
Q 005342 677 ISHIMFVQIVV 687 (701)
Q Consensus 677 i~~~~fs~~~~ 687 (701)
+....+++...
T Consensus 415 ~~~~~~~~~~~ 425 (466)
T COG2319 415 VTSLDFSPDGK 425 (466)
T ss_pred EEEEEECCCCc
Confidence 44555544433
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=5.5e-16 Score=148.89 Aligned_cols=283 Identities=10% Similarity=0.155 Sum_probs=194.2
Q ss_pred EeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342 323 IKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~ 391 (701)
.+.|+..+. .++|++- ...+++.+|.....-.++.+ +...+ ..
T Consensus 34 ~ed~~~~I~--gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~l----------q~y~D--------------~d 87 (385)
T KOG1034|consen 34 KEDHNKPIF--GVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLL----------QSYAD--------------ED 87 (385)
T ss_pred hccCCCccc--eeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeee----------eeccC--------------CC
Confidence 466777888 8888854 45567777776554433331 11110 13
Q ss_pred CCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcE
Q 005342 392 NNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATH 465 (701)
Q Consensus 392 h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i 465 (701)
|+. ...++|+-| ..++|.|+.-|.|+|.|+. .+++.. ...+|...|..+.+.|+. ++++++|.|.+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~----~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV----SGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc----hhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 444 566777644 4588999999999999998 565555 445799999999999975 688899999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA- 539 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~- 539 (701)
++||+ ++..++.. +- .+|.+.|.++.|+ |.++++++ |.++++|++...+...
T Consensus 161 RlwnI---------------------~~~~Cv~V-fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 161 RLWNI---------------------QTDVCVAV-FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred EEEec---------------------cCCeEEEE-ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 99976 44444321 11 3899999999999 99999999 9999999997432111
Q ss_pred -----Ee----------------------cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCC-CCc-------------e
Q 005342 540 -----TF----------------------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKK-------------T 578 (701)
Q Consensus 540 -----~~----------------------~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~-~~~-------------~ 578 (701)
.+ .-|...|-|+.|-.+ ++++-+-++.|..|... -++ .
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceee
Confidence 01 012333344444332 78888888999999862 111 2
Q ss_pred EEeecCCCCCeEEE--EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E
Q 005342 579 KAKLKGHQNRITCL--AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 655 (701)
Q Consensus 579 ~~~l~~h~~~V~~v--~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g 655 (701)
+.++.-....|+-+ +|.|-+++||.|...|.|++||++..++.....+. ... ....|...+||.||..|+. .
T Consensus 298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~---~s~--~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT---HSK--SGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE---ecc--ccceeeeeeecccCcEEEEEe
Confidence 23333334455555 45566889999999999999999986542222222 111 2277999999999999887 5
Q ss_pred ecCeEEEEECC
Q 005342 656 HEGQIDVYEAP 666 (701)
Q Consensus 656 ~Dg~I~iwd~~ 666 (701)
+|++|.-||..
T Consensus 373 dd~~Vwrwdrv 383 (385)
T KOG1034|consen 373 DDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEEee
Confidence 99999999863
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=4.6e-15 Score=145.01 Aligned_cols=233 Identities=14% Similarity=0.200 Sum_probs=170.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC--CcEEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~ 472 (701)
+..+.|..|...|..|+.||. ++++.+. .+++... ......|..+-|+.+ .++..+.+ +.+++++.
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~---~~k~~~~----~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~-- 75 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSP---FEKCFSK----DTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHF-- 75 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCc---hHHhhcc----cCCCeEEEEeecccc--eeEEEecCCCceEEEEEc--
Confidence 677889999999999999874 6676653 2222221 112345666677644 45555543 34666643
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCC---CCCeE
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANP---PPIAT 549 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~---~~~i~ 549 (701)
..+..+... .....|.++.++.++|+++=...|+|||+++.+.++++... ...+.
T Consensus 76 -------------------Kk~~~ICe~---~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 76 -------------------KKKTTICEI---FFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred -------------------ccCceEEEE---ecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceE
Confidence 444444331 24568889999966666666555999999999999888643 44466
Q ss_pred EEEEcCCC-eEEEE--eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeeeeeee
Q 005342 550 YFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKF 625 (701)
Q Consensus 550 ~l~~spdg-~l~~g--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~-I~vwd~~~g~~~~~~~ 625 (701)
.+++++.+ ++|.- ...|.|++||..+-+.+..+..|++.+-+++|+|+|.+|||+|+.|+ |||+++.+|.+...
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e-- 211 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE-- 211 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee--
Confidence 66666666 77753 34689999999999999999999999999999999999999999997 59999999864432
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 668 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g 668 (701)
+..|-.+ ..|.+++|+||+++|++ |+.++|+|+.+++-
T Consensus 212 ---FRRG~~~--~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 ---FRRGTYP--VSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ---eeCCcee--eEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 4344433 77899999999999998 58899999998653
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.8e-15 Score=138.22 Aligned_cols=225 Identities=15% Similarity=0.170 Sum_probs=161.7
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 521 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s 521 (701)
..|.+-+|+|.++++++|+.+|.|.+..+.+-..... .+.....+.. . ..|+++|+.++|.+.+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~-e-qahdgpiy~~~f~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVP-E-QAHDGPIYYLAFHDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceee-c-cccCCCeeeeeeehhheee
Confidence 3456668999999999999999999997744321000 1112222211 2 5899999999999889999
Q ss_pred EeCCeEEEEeCCCCcE------EEEe--c-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC
Q 005342 522 ASGGKISIFSLETFQT------LATF--A-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 587 (701)
Q Consensus 522 ~sdg~I~iwd~~~~~~------~~~~--~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~ 587 (701)
|+||.|+-|..+.... +... + ..-..|+++...|.. -++.++.|+.++-||+++|+..++++||+.
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999999998654321 1111 1 123467999999988 666666999999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec-----cCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEE
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-----QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 662 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~-----~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~i 662 (701)
.|.+++--.....+.||++||++|+||.++++.+. .+... ...|. ...|.+++- +..++++|..-.+.+
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~--g~wigala~--~edWlvCGgGp~lsl 231 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDW--GKWIGALAV--NEDWLVCGGGPKLSL 231 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCccc--CceeEEEec--cCceEEecCCCceeE
Confidence 99999884444568899999999999999986433 33211 11111 144555554 456899987788999
Q ss_pred EECCCCceeeeeee---eeEEEEEee
Q 005342 663 YEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 663 wd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
|++++.++..+++- +..+.|-.+
T Consensus 232 whLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred EeccCCCceEEEecccceeEeeeecc
Confidence 99999988877765 666666433
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=1.1e-13 Score=149.34 Aligned_cols=295 Identities=22% Similarity=0.294 Sum_probs=214.0
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc-cccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS-NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
.+..|...+. ++.|.+. +.|+.+.+|+...+. .... +.+. +.
T Consensus 60 ~~~~~~~~i~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------~~~~------------------~~ 109 (466)
T COG2319 60 LLRGHEDSIT--SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS----------LEGL------------------HD 109 (466)
T ss_pred eeeeccceEE--EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE----------Eecc------------------CC
Confidence 4567788888 8888887 679999999998876 3333 1111 11
Q ss_pred -ceEEEEE-cCCCC-eEEEEcC-CCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEE
Q 005342 394 -QSRESTS-LPDAD-SAVCAKS-LEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKL 467 (701)
Q Consensus 394 -~V~~l~~-spdg~-~l~s~s~-d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~v 467 (701)
.+..+.+ ++++. .++..+. |+.+.+|+.. . ..... ....|...|.++.|+|++..+++++. |+.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLS----TPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEec----CCCeEEE---EEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence 2555666 88888 5555454 8999999997 3 22222 22358899999999999998888886 999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCCCcEEE-Eec
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFA 542 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~~~~~~-~~~ 542 (701)
|+. ..+..... + .+|...|.+++++ +. .+++++ |+.|++||...+.... .+.
T Consensus 183 ~~~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~ 239 (466)
T COG2319 183 WDL---------------------RTGKPLST-L-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239 (466)
T ss_pred EEc---------------------CCCceEEe-e-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC
Confidence 966 32332221 2 3588899999999 55 455546 8999999998888877 688
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
+|.... ...|+|++ .+++++.|+.+++||...... +..+.+|...+.++.|+|++..+++++.|+.+.+||..+...
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 787765 44899999 888999999999999987654 444567889999999999888888899999999999888653
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ 684 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~ 684 (701)
..... ...|. ..+..+.|++++..++.+ .|+.+.+|+............ +..+.+++
T Consensus 319 ~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (466)
T COG2319 319 LSSLT----LKGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP 380 (466)
T ss_pred EEEee----ecccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC
Confidence 32222 12443 568999994343555554 688999999988773333332 45666655
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.7e-15 Score=145.82 Aligned_cols=252 Identities=10% Similarity=0.083 Sum_probs=178.2
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.+ |+++.|+.++++|++|+.|..+++|++.+.-.......+.+....|...|.|++|....+++.+|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 679999 9999999999999999999999999997432211112233333457789999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEE--e
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLAT--F 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~--~ 541 (701)
-|+++ .+.+...-.....+.|+.+..+ .+.+++.+ +|.|.+||++... .... .
T Consensus 132 HDiEt---------------------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 132 HDIET---------------------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred eeccc---------------------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 97643 3322110111234588888888 88888888 8999999998654 2222 2
Q ss_pred cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-----------------------------e-----------E
Q 005342 542 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-----------------------------T-----------K 579 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-----------------------------~-----------~ 579 (701)
........++.|+|.. +|++++..+-+-+||++... . .
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 2235567889999998 89999999999999976321 0 0
Q ss_pred --------Eeec-CCC-------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee------------------eeeee
Q 005342 580 --------AKLK-GHQ-------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK------------------LCSKF 625 (701)
Q Consensus 580 --------~~l~-~h~-------~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~------------------~~~~~ 625 (701)
..++ .|. ..+.+++|-.|- -+++||++-.|++|.+..... .-...
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 0011 121 134556665443 489999999999998864210 11122
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
+. +..||. +.++.|.|+|...+|+++ -.+.++||.-.
T Consensus 350 ~~-VLrGHR---Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LT-VLRGHR---SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eE-EEeccc---ccccceeecCCcceEeccchhhheeccccc
Confidence 22 344676 889999999999999884 78999999764
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.8e-16 Score=159.41 Aligned_cols=251 Identities=16% Similarity=0.119 Sum_probs=180.7
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ 394 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~ 394 (701)
++..|.+.+. .+.|.|. +.|+++++|+++....-.. ..++ +...|++|.+
T Consensus 289 tl~s~~d~ir--~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~--------~~~e-------------pi~tfraH~g 345 (577)
T KOG0642|consen 289 TLRSHDDCIR--ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE--------KDVE-------------PILTFRAHEG 345 (577)
T ss_pred eeecchhhhh--hhhcCCCCCeEEEeccccchhhhhhcccCCccc--------ccee-------------eeEEEecccC
Confidence 6788889899 8888877 8999999999954111110 0000 1223789999
Q ss_pred -eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC---CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 395 -SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP---SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 395 -V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~---~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|-|+++.+++..+++|+.||+|+.|++....++ .....+.-.+.||.+.|+.+++|+...+|++++.||+++.|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 999999999999999999999999976511111 1112333345689999999999999999999999999999976
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE--EEEEe--CCeEEEEeCCCCcEEEEecCC--
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH--LFSAS--GGKISIFSLETFQTLATFANP-- 544 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~--l~s~s--dg~I~iwd~~~~~~~~~~~~~-- 544 (701)
..... +... ....+ +...++.+.... +..++ -+.-.++++.+...+..+...
T Consensus 426 ~~~~~--------------------~~f~-~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 426 TEESP--------------------CTFG-EPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred CCcCc--------------------cccC-Ccccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 33211 1100 11122 233344444111 11111 344445555555544444311
Q ss_pred -----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 545 -----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 545 -----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
...+..+.++|.+ +.+++.+|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus 484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 2356788899999 999999999999999999999999999999999999999999999999999999999876
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=157.04 Aligned_cols=251 Identities=12% Similarity=0.064 Sum_probs=175.0
Q ss_pred eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE--EEEEECCCcEEEEecC
Q 005342 395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF--LVALTQTATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~--l~s~s~dg~i~vwd~~ 471 (701)
|.++.|+|. ..+++.|..+|.|.+||+......- ...+......|..+|+.+.|..+-.- +++++.||.|..|+++
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence 889999995 5677788899999999997422210 11222333468999999999876544 9999999999999774
Q ss_pred CCCcc-ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--------EE
Q 005342 472 SNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TL 538 (701)
Q Consensus 472 ~~~~~-~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--------~~ 538 (701)
.-..+ .+..... ....+. .......+++++|. ...+++|+ +|.|.--+....+ ..
T Consensus 324 ~l~~P~e~~~~~~------~~~~~~------~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 324 MLSLPVEGLLLES------KKHKGQ------QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ccccchhhccccc------cccccc------ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 43221 1111000 000000 00223467788887 66788888 7988774433221 12
Q ss_pred EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEE
Q 005342 539 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWD 614 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd 614 (701)
..+..|.++|+++.++|=+ .+++++ |.+++||... ...++..+..+...|++++|||... .++++..||.|.+||
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 3556678999999999999 444444 9999999987 6667777777888899999999654 788889999999999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
+..... .+..+...+ . ...+.+.|+++|+.|++| ..|++.+|++.
T Consensus 471 Ll~~~~---~Pv~s~~~~-~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 471 LLQDDE---EPVLSQKVC-S---PALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhcccc---CCccccccc-c---cccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 987532 222212222 2 667889999999999999 68999999995
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=5.8e-15 Score=139.62 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=180.3
Q ss_pred eEEEEEc--CC-CCeEEEEcC----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-----EEEEEECC
Q 005342 395 SRESTSL--PD-ADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-----FLVALTQT 462 (701)
Q Consensus 395 V~~l~~s--pd-g~~l~s~s~----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-----~l~s~s~d 462 (701)
+.++.|+ |+ +.+||.|+- .+.|.|-.+.+ ++++...- +.-.|.-+++.+.|.|+.. .|+++ +
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~--~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~ 120 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDE--DSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATS--S 120 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEcc--CCCceecc--CCCCCCCCccceEecCCccccCcchhhcc--c
Confidence 6677887 33 347787763 35677776652 23333221 1125788999999999874 34443 3
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc--
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-- 536 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-- 536 (701)
..+++|.+...+. ...-..++.+.-...+..+++++.|+ .+++.+.+ |-+..|||++++.
T Consensus 121 D~LRlWri~~ee~--------------~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 121 DFLRLWRIGDEES--------------RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred CeEEEEeccCcCC--------------ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc
Confidence 4799997743211 00000011111113567899999999 77888888 9999999999873
Q ss_pred -EEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEee-c--CCCCCeEEEEEec-CCCEEEEEeCC-C
Q 005342 537 -TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-K--GHQNRITCLAYSL-SLNVLVSSGAD-A 608 (701)
Q Consensus 537 -~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l-~--~h~~~V~~v~~sp-dg~~l~s~s~D-~ 608 (701)
....+..|...|..++|..++ .+|+.+.||.+++||++..+.-..+ + ....+...++|++ |-+++|+-..| .
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 345566799999999999988 9999999999999999976433222 2 2245788999998 66788876554 5
Q ss_pred eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEE-EecCeEEEEECCCCce------ee--eeee-e
Q 005342 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNH------TS--QVLL-I 677 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~s-g~Dg~I~iwd~~~g~~------~~--~l~~-i 677 (701)
.|.|-|++.-. .++.++. +|. +.|++++|.|.. .+|++ |+|..+-|||+.+.-. +- +..+ |
T Consensus 267 ~V~iLDiR~P~----tpva~L~-~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EV 338 (364)
T KOG0290|consen 267 KVVILDIRVPC----TPVARLR-NHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEV 338 (364)
T ss_pred eEEEEEecCCC----cceehhh-cCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcccee
Confidence 79999999842 3344244 555 999999999974 66777 5899999999965322 11 1112 9
Q ss_pred eEEEEEeeE
Q 005342 678 SHIMFVQIV 686 (701)
Q Consensus 678 ~~~~fs~~~ 686 (701)
+.+.|++..
T Consensus 339 Nqi~Ws~~~ 347 (364)
T KOG0290|consen 339 NQIQWSSSQ 347 (364)
T ss_pred eeeeecccC
Confidence 999998553
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.7e-15 Score=152.35 Aligned_cols=204 Identities=15% Similarity=0.172 Sum_probs=157.6
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 483 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~ 483 (701)
...++.++.||.+.+-+-. ++... ....|.+.+.+-.|+|||.-|++++.||.|++|.
T Consensus 75 ~d~~~i~s~DGkf~il~k~-----~rVE~---sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-------------- 132 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-----ARVER---SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-------------- 132 (737)
T ss_pred cceEEEEcCCceEEEeccc-----chhhh---hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe--------------
Confidence 3578888999999887753 33333 3346899999999999999999999999999994
Q ss_pred eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE
Q 005342 484 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 560 (701)
Q Consensus 484 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~ 560 (701)
.+|.+-+. + .....+|.|++|. .+.++.+..+.+.+=.+.....+-....|.+-|.++.|++.+ .|+
T Consensus 133 --------rsGMLRSt-l-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 133 --------RSGMLRST-V-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred --------ccchHHHH-H-hhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence 33332221 1 2356789999998 566666667788888887777777788899999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 561 ~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+|++|-..++||. .|..+..-..|.-+|++++|+|+ ..++.+|. ++.++ . .... +.|
T Consensus 203 sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~--------------~p~~---GSi 259 (737)
T KOG1524|consen 203 SGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---S--------------SPRV---GSI 259 (737)
T ss_pred ecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee---c--------------CCCc---cce
Confidence 9999999999995 56677766779999999999999 55665664 23331 1 1122 789
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEE
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDV 662 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~i 662 (701)
..++|||||..+++| ..|.+.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEEEcCCCceeeccccCceEEE
Confidence 999999999999987 6666543
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=9.5e-15 Score=159.21 Aligned_cols=260 Identities=15% Similarity=0.111 Sum_probs=175.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~ 471 (701)
-..+.|+|-...++++.....|++||.+ .+++.. +.. .......|+.+.+-. |...+++|+.||.|+||+--
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e----~~~~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE----KGRLLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecc----cCceeccccC-CCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 5668899999999999988999999998 444332 111 112356788888865 44588999999999999631
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC-CCC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPI 547 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~-~~~ 547 (701)
......-+. +..|..-++... +..+.-.-+.|. ..+|++++ -..|+|||......++.+... ...
T Consensus 1142 ~~~~~~~eL-----VTaw~~Ls~~~~------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1142 ADKWKKPEL-----VTAWSSLSDQLP------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred ccccCCcee-----EEeeccccccCc------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence 110000000 122332222221 111211345565 44555555 689999999888777776533 445
Q ss_pred eEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCCC--eEEEEEecCCC-EEEEEeCCCeEEEEECCCCe
Q 005342 548 ATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR--ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 548 i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~~--V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g~ 619 (701)
++++.-+-. | .|++|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|- -|++||.||.|++||+++..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 666655543 4 9999999999999998864 357778889887 99999998765 49999999999999999842
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
... .+. +..+.. .++..+++..+++...+|+|.-+.|+||++ .|+.+..+.
T Consensus 1291 ~e~--~~~-iv~~~~-yGs~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k 1341 (1387)
T KOG1517|consen 1291 KET--FLT-IVAHWE-YGSALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIK 1341 (1387)
T ss_pred ccc--cce-eeeccc-cCccceeeeeccCCCeeeecCcceEEEEec-Chhhhcccc
Confidence 221 222 222211 114589999999999999986699999998 555554443
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=4.3e-15 Score=140.29 Aligned_cols=198 Identities=13% Similarity=0.168 Sum_probs=151.3
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEec--CCCEEEEEECCCcEEEEec
Q 005342 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~ 470 (701)
.|.|+.|.|++..+++-. |..|.+|++.+.... ...+..+. ..+....++-+|+| ||+.+++ ..|+++..||+
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~ 200 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDL 200 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEc
Confidence 499999999999999887 689999999853331 11212121 23466778889998 7776555 66899999977
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPP 545 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~ 545 (701)
++. ...- .+...|...|.++.|+ ..+|++|+ ||.|++||.+.. .++..+.+|.
T Consensus 201 RT~---------------------~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 201 RTM---------------------KKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred cch---------------------hhhc-chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 432 2110 1445788899999999 55788888 899999998764 4788999999
Q ss_pred CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-----------------------------ceEEeecCCCCCeEEEEE
Q 005342 546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTK-----------------------------KTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 546 ~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~v~~ 594 (701)
..+.++.|+|.. +|++|+.|..|.+|...+- ..+.++..|...|.+++|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 999999999988 9999999999999975321 124467779999999999
Q ss_pred ecC-CCEEEEEeCCCeEEEEECCC
Q 005342 595 SLS-LNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 595 spd-g~~l~s~s~D~~I~vwd~~~ 617 (701)
|.- .-.+|+-|.||++.|=.+..
T Consensus 339 SsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCCh
Confidence 984 44678999999999877665
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=141.09 Aligned_cols=259 Identities=13% Similarity=0.075 Sum_probs=177.3
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.|++|.. |+++.|-.+++ |.+|..-|.|++|++. +.+-.. .+ ...+...|+.+.-.|++ .+.+-+.|+.+.
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq----t~r~~~-~~-r~~g~~~it~lq~~p~d-~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ----TERDLP-LI-RLFGRLFITNLQSIPND-SLDTQGRDPLLI 80 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEee----cCccch-hh-hhhccceeeceeecCCc-chhhcCCCceEE
Confidence 3678888 99999988866 8899999999999998 332111 01 11367789999988884 478889999999
Q ss_pred EEecCCCCc-------------------cccccccceeeEEeeCC---------CCe----EEeecccCCCCCCeEEEEe
Q 005342 467 LWKWQSNKQ-------------------SLEEENVNMESQLYQPS---------SKL----VMTNDIAADPKDSISCFAL 514 (701)
Q Consensus 467 vwd~~~~~~-------------------~~g~~~~~~~i~~~d~~---------~~~----~~~~~~~~~~~~~v~~l~~ 514 (701)
+|++..... ..++... ....|+.+ .+. .+..+-..+..+.+.|..+
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~e--qll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSE--QLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcch--hheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 999866332 0000000 00011100 010 1111111134566777776
Q ss_pred c---CC-EEE-EEe-CCeEEEEeCCCCc----------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-
Q 005342 515 R---GS-HLF-SAS-GGKISIFSLETFQ----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK- 576 (701)
Q Consensus 515 s---~~-~l~-s~s-dg~I~iwd~~~~~----------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~- 576 (701)
. +. .++ +|. +|.+.+||+.++. ....+..|..++.++.+.+.- .=++|+.+..+..|++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 6 44 344 444 7999999999873 333445678899999998755 5577777788888887643
Q ss_pred -ce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 577 -KT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 577 -~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
.+ .....-.+-.|..+..-||++.+||++.|++||||+.++.+ ++. +..-|. ..|++++|+|+...+|
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-----pLA-VLkyHs---agvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-----PLA-VLKYHS---AGVNAVAFSPDCELMA 309 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-----chh-hhhhhh---cceeEEEeCCCCchhh
Confidence 22 11122223468899999999999999999999999999964 444 444666 8999999999988888
Q ss_pred E-EecCeEEEEEC
Q 005342 654 S-IHEGQIDVYEA 665 (701)
Q Consensus 654 s-g~Dg~I~iwd~ 665 (701)
+ |.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 8 58999999986
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=2.2e-15 Score=155.62 Aligned_cols=241 Identities=17% Similarity=0.165 Sum_probs=168.4
Q ss_pred EcCCCCeEEE--EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEecCCCCcc
Q 005342 400 SLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 400 ~spdg~~l~s--~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
|..+..++|. ++..|.|-|+++++ .|+...-.++.-.....|+.+.|.| |...|++++.||.|++|.+..+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 3334444443 45568999999975 4543221222223467899999999 6778999999999999988654321
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
.. ..+-.- +...|...|+++.|+ .+.|++++ |.+|++||+.+++....+.+|...|..++
T Consensus 664 e~------------~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~A 727 (1012)
T KOG1445|consen 664 EN------------EMTPEK----ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIA 727 (1012)
T ss_pred cc------------cCCcce----eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEE
Confidence 00 001111 114789999999999 88899998 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCC-CCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCe--eeee
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWK--KLCS 623 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~-~~V~~v~~spdg~~l~s~s~D~----~I~vwd~~~g~--~~~~ 623 (701)
||||| .+|+.+.||+|++|+.++++ .++.=.|.. ..--.+.|--||+++++.+.|. .|.+||..+-. .+..
T Consensus 728 WSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t 807 (1012)
T KOG1445|consen 728 WSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT 807 (1012)
T ss_pred ECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence 99999 99999999999999988764 344333311 2345688989999988877664 68888877621 1222
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEE-EEE-ecCeEEEEECCC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI-HEGQIDVYEAPT 667 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~sg-~Dg~I~iwd~~~ 667 (701)
..+. .. ..+.--.+.+|...+ ++| .|..|..|.+-.
T Consensus 808 ~~lD---va-----ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 808 QVLD---VA-----PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred eeec---cc-----CccccccccCCCceEEEecCCCceEEEEEecC
Confidence 2222 11 112223456676555 457 799999998843
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.6e-14 Score=156.82 Aligned_cols=213 Identities=10% Similarity=0.042 Sum_probs=143.7
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATH 465 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i 465 (701)
.|.. +.+++|||||+.|+.++.+ ..|++||+. +++...+. .. .+....++|+|||+.|+.++ .+|.+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~----tg~~~~l~-~~---~g~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR----SGARKVVA-SF---RGHNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC----CCceEEEe-cC---CCccCceeECCCCCEEEEEEecCCcE
Confidence 4445 7889999999999987654 469999997 55443433 12 22344689999999988875 58888
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC-cEEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETF-QTLAT 540 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~-~~~~~ 540 (701)
.+|.+ |..++.... + ..+...+.+.+|+ |+.|+.++ +|...+|++... .....
T Consensus 273 ~Iy~~-------------------d~~~~~~~~--l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 273 NIYVM-------------------GANGGTPSQ--L-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred EEEEE-------------------ECCCCCeEe--e-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 88744 655555432 2 2355567788999 77777665 577777775432 22233
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--C
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--G 617 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~--~ 617 (701)
+ .+.. .+..|+||| .|+.++.++ +.+||+.+++.......+ ...++.|+|||++|++++.++.+.+|++. +
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 3 2333 467899999 887777654 666999988765432222 23567899999999999999988888763 3
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
|. ....+. +|. +.+..++|||-
T Consensus 405 G~-----~~~~l~-~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 405 GR-----FKARLP-GSD---GQVKFPAWSPY 426 (429)
T ss_pred CC-----ceEEcc-CCC---CCCCCcccCCC
Confidence 42 122232 343 67888999985
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=6.6e-16 Score=164.22 Aligned_cols=277 Identities=13% Similarity=0.174 Sum_probs=202.8
Q ss_pred eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
++.|.+|.+.|. |+.|--. ++|.-++||..+++.|+.. . .||
T Consensus 183 ikrLlgH~naVy--ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs----------~-------------------rGh 231 (1113)
T KOG0644|consen 183 IKRLLGHRNAVY--CAIFDRTGRYIITGSDDRLVKIWSMETARCLAS----------C-------------------RGH 231 (1113)
T ss_pred HHHHHhhhhhee--eeeeccccceEeecCccceeeeeeccchhhhcc----------C-------------------CCC
Confidence 345678999999 9999766 8999999999999988877 2 477
Q ss_pred Cc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 393 NQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
.+ |+.++.+.+..++++++.|..|++|.+. .+.... ...+|++.|++++|+|-. +.+.||++++||.+
T Consensus 232 s~ditdlavs~~n~~iaaaS~D~vIrvWrl~----~~~pvs---vLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 232 SGDITDLAVSSNNTMIAAASNDKVIRVWRLP----DGAPVS---VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ccccchhccchhhhhhhhcccCceEEEEecC----CCchHH---HHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 77 8999999999999999999999999997 443333 234799999999999964 67889999999874
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
-. ++.|-+.. +......-+.++-+- +..+++++ |+.-..|.+..-. .+...+
T Consensus 301 ~~------------~~~y~prp-------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~l 355 (1113)
T KOG0644|consen 301 LE------------PRIYVPRP-------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLL 355 (1113)
T ss_pred cc------------ccccCCCC-------CCcccccceeeeeccccccccccccCCcccccchhhHhh------hhccce
Confidence 11 11111110 101112334344444 67788888 8887777664211 111122
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 549 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 549 ~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
.-+..+.|. ..+++-.+..+.+|++.+|...+.+.+|...+..+.++|- .....+++.||.+.|||+-.|.++....
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222233 6777778889999999999999999999999999999994 4555689999999999999986543222
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
.+| +.+..-.||+||..++.+ +-|.++|.....++..+
T Consensus 436 -----~gh----~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 436 -----IGH----GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred -----ccc----ceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 255 778888999999999987 67889998876665443
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=135.71 Aligned_cols=253 Identities=16% Similarity=0.157 Sum_probs=169.4
Q ss_pred ceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~ 391 (701)
.....|++|.+.|. ++.|-.+ ..-|.+++|++++...... +.++
T Consensus 5 dP~fvLRp~~~~v~--s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~----------~r~~------------------ 54 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVT--SVLFQANERLMSGLSVGIVKMWVLQTERDLPL----------IRLF------------------ 54 (323)
T ss_pred CCeeEeccccchhe--ehhhccchhhhcccccceEEEEEeecCccchh----------hhhh------------------
Confidence 34556789999999 8888877 6679999999998876555 2221
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEecccc---------------------C----------------------CC
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLI---------------------N----------------------EP 427 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~---------------------~----------------------~~ 427 (701)
|.. |..+.--|+ ..+.+-+.|+.+.+|++... + +.
T Consensus 55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 222 555666665 45566666677777766520 0 00
Q ss_pred CceeEeecCC---CCCCCCEEEEEEec-CCC--EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC-CCeEEeec
Q 005342 428 SECRTLLLPD---NSFGGRVVRLIYSH-SGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTND 500 (701)
Q Consensus 428 ~~~~~l~~~~---~~~~~~v~~l~~sp-dg~--~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~-~~~~~~~~ 500 (701)
+....+..+. ....+.+.|..+.. ++. .+++|..+|.+.+||+.++.. +.+.. .......
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~------------~~~~~~~~kv~~~- 200 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK------------IIQLPQSSKVESP- 200 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce------------eeccccccccccc-
Confidence 0000001000 12335566666433 233 456677799999998855421 00111 1111111
Q ss_pred ccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC--CcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342 501 IAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (701)
Q Consensus 501 ~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd 572 (701)
. ..|..+|.++.+. -+.=++|+ +..+..|+++. +.+ .....-....+..+.+-||+ .+|+++.|+.|++|+
T Consensus 201 ~-ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 201 N-ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred h-hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 1 3688899999887 22335566 77788888753 322 12222235578899999999 999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
.++..++..++.|...|++++|+|+...+|++|.|++|.+|++
T Consensus 280 wrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 280 WRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999999986
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=4.3e-14 Score=152.56 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=187.0
Q ss_pred cccccccCcc-ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 308 KLKFPSMDKS-RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 308 ~i~iwd~~~~-~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
.+.+|++.+. .....+. ....|. |+.|+|. ..+|.|.+||+..+...-.. .+..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~-~~s~v~--~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s--------~ls~------ 285 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE-SPSEVT--CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS--------GLSA------ 285 (555)
T ss_pred eEEEEecCCCCCceEEEe-cCCcee--EEEeccCCcceEEeeccCceEEEEEccCCCCCCCc--------cccc------
Confidence 5789998776 3333333 345577 9999987 78999999999877652110 0000
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEe
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYS 450 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~s 450 (701)
....|.. ++.+.|..+- .-+++++.||.|..|+++....+.+........ ......++++.|.
T Consensus 286 ---------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~ 356 (555)
T KOG1587|consen 286 ---------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE 356 (555)
T ss_pred ---------ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec
Confidence 1236777 9999997654 449999999999999987543322211111000 1234578999998
Q ss_pred cC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCe
Q 005342 451 HS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGK 526 (701)
Q Consensus 451 pd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~ 526 (701)
+. -..+++|+.+|.|..-+......... .++ +... ....|.++|.++.++ ...+.+++|.+
T Consensus 357 ~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~-----~~~~--~~~~h~g~v~~v~~nPF~~k~fls~gDW~ 421 (555)
T KOG1587|consen 357 PTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSY-----KGHS--TFITHIGPVYAVSRNPFYPKNFLSVGDWT 421 (555)
T ss_pred cCCCceEEEEcCCcEEEEEeccCCccccc--------ccc-----cccc--cccccCcceEeeecCCCccceeeeeccce
Confidence 74 45788999999998743322110000 000 0010 113578899999999 55666666999
Q ss_pred EEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecCCCEE
Q 005342 527 ISIFSLE-TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 527 I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spdg~~l 601 (701)
+++|... ...++..+..+...+++++|||.. .++++..||.|.+||+... .++.+..-+....+.+.|++.|+.|
T Consensus 422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence 9999987 566676777677779999999998 9999999999999998754 3444444456677888999999999
Q ss_pred EEEeCCCeEEEEECCC
Q 005342 602 VSSGADAQLCVWDAVG 617 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~ 617 (701)
+.|...|++.+|++..
T Consensus 502 avGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSE 517 (555)
T ss_pred EEecCCCcEEEEEcCc
Confidence 9999999999999975
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.4e-15 Score=147.17 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=141.7
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
..++|+++|..+++|+.||.+++|++.+... . +....|...|.++.|||||+.|++.+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~---l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-- 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----I---LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-- 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----h---hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--
Confidence 5789999999999999999999999752111 1 1233578999999999999999999999 9999977443
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC-----EEEEEe--CCeEEEEeCCCCc-----EEEEec
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-----HLFSAS--GGKISIFSLETFQ-----TLATFA 542 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~-----~l~s~s--dg~I~iwd~~~~~-----~~~~~~ 542 (701)
..+...-+.........+.|+ .. ++++.. .+.|+.||+...+ ..++..
T Consensus 218 -------------------~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 218 -------------------AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred -------------------chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 222110001222334455566 22 333332 3667776654322 112222
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
.....|+++++++|| ++|.|+.||.|-|++..+.+.++..+ .|...|+.+.|+||.+++++.+.|.++.|..+.-.
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 234579999999999 99999999999999999888777655 49999999999999999999999999999877653
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=2.9e-14 Score=136.86 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=172.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|.+.+|++|++.+|.+.....|.|+... ..+.+.....+..|...|+++.|+|.++.|++|+.|..-++|...
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~----~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~--- 85 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSML----GADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP--- 85 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEec----CCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC---
Confidence 8899999999999999999999999987 454344333456789999999999999999999999999999541
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE----EEEecCCCCC
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPI 547 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~~ 547 (701)
+.+.-......-.+....+++.|+ ++.+++|+ ...|.||-++.... .+.-..+.+.
T Consensus 86 -----------------~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 86 -----------------SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred -----------------CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 222211110112477899999999 88899999 78899998854331 1222346788
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCC-----C-------------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342 548 ATYFILLPQD-LFAFGFDDSSILVHCPC-----T-------------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~dg~I~iwd~~-----~-------------~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
|+++.|+|++ ++++|+.|+..+++..- + |+++.++....+.|..+.|+|+|+.|+-.+.|+
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds 228 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS 228 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence 9999999999 99999999999998631 1 334555545567899999999999999999999
Q ss_pred eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEec
Q 005342 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 657 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~D 657 (701)
++.+-|...... ....+...+ -+..++.|-.+...+++|.|
T Consensus 229 ~v~~~da~~p~~----~v~~~~~~~----lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 229 TVSFVDAAGPSE----RVQSVATAQ----LPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ceEEeecCCCch----hccchhhcc----CCceeeEeecCCceeecCCC
Confidence 999999887531 122122233 55677777766666665655
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=5.5e-14 Score=138.26 Aligned_cols=229 Identities=12% Similarity=0.181 Sum_probs=164.8
Q ss_pred ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i 465 (701)
+.||.. |-.++|.| +...+|+||.|.+|.||.+.+...+.....-...+.+|..+|.-++|+|.. +.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 558999 99999999 567899999999999999974322211111011235799999999999975 477899999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.+||+ .+|..+.. + .|...|.+++|+ |+++++++ |..|+|||.++++.+..-.
T Consensus 157 ~iWnv---------------------~tgeali~-l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 157 SIWNV---------------------GTGEALIT-L--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred EEEec---------------------cCCceeee-c--CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 99965 56663322 3 499999999999 99999999 9999999999999998877
Q ss_pred CCCC-CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCc---eEEeecCCCCCeEEEEEecCCCEEEE-EeCCCeEEEE
Q 005342 543 NPPP-IATYFILLPQD-LFAFGF---DDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVW 613 (701)
Q Consensus 543 ~~~~-~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~---~~~~l~~h~~~V~~v~~spdg~~l~s-~s~D~~I~vw 613 (701)
+|.+ .-..+.|-.+| .+-+|. .+..+-+||..+-+ ...++.. .+.|.---|.||.++++. |-.|+.|+-|
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 7744 34667788888 666654 45589999976543 2344543 345666678888887764 5569999999
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
.+....+. ...+.++..- .+-..+.|-|.
T Consensus 292 Eit~d~P~-~hyln~f~S~-----epQRG~g~mPK 320 (472)
T KOG0303|consen 292 EITNEPPF-VHYLNTFSSK-----EPQRGMGFMPK 320 (472)
T ss_pred EecCCCce-eEEecccccC-----Ccccccccccc
Confidence 99886432 2334323211 34455666664
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=8e-13 Score=139.02 Aligned_cols=230 Identities=13% Similarity=0.133 Sum_probs=147.5
Q ss_pred EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceee
Q 005342 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMES 486 (701)
Q Consensus 408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i 486 (701)
++...++.|.+|++.+ .+....+.. . ...+....++++|++++|++++. ++.|.+|++.
T Consensus 6 ~~~~~~~~I~~~~~~~---~g~l~~~~~-~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~--------------- 65 (330)
T PRK11028 6 IASPESQQIHVWNLNH---EGALTLLQV-V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA--------------- 65 (330)
T ss_pred EEcCCCCCEEEEEECC---CCceeeeeE-E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC---------------
Confidence 3446789999999962 233222221 1 12355778899999999877754 7889999762
Q ss_pred EEeeCCCCeEE-eecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-C---cEEEEecCCCCCeEEEEEcCCC
Q 005342 487 QLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-F---QTLATFANPPPIATYFILLPQD 557 (701)
Q Consensus 487 ~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~---~~~~~~~~~~~~i~~l~~spdg 557 (701)
.++.+. .... ........++++ |+++++++ ++.|.+||+.+ + +.+..+. +.....+++++|+|
T Consensus 66 -----~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 66 -----DDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred -----CCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 222221 0101 122345678888 88888777 79999999964 2 2233333 23346778999999
Q ss_pred -eE-EEEeCCCcEEEEeCCCCceEE-------eecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC--Ceeeeeee
Q 005342 558 -LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKF 625 (701)
Q Consensus 558 -~l-~~gs~dg~I~iwd~~~~~~~~-------~l~~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~--g~~~~~~~ 625 (701)
++ ++...++.|.+||+.+...+. .... ......++|+|+|++++++.. +++|.+|++.. ++......
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 55 566677999999997633221 1111 234678999999999987766 89999999974 33222222
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
+..++.... .......+.++|+|++++++ .++.|.+|++.+
T Consensus 217 ~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 217 LDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 321211111 01234468999999999986 478999999954
No 195
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=8.9e-13 Score=138.72 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=189.6
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
++|.+.|.++.+.+..+........ .+.|+|| +.|+.|.++|+.+++.+..+ +
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~--~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----------~-------- 75 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHA--GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----------K-------- 75 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEE--EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----------E--------
T ss_pred CEEEEEECCCCeEEEEEcCCCCcee--EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----------e--------
Confidence 8899999999999999987665444 5789998 77999999999999987773 1
Q ss_pred CCCCCCCccccCCCceEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCcee-Eee---cCCCCCCCCEEEEEEecCCC
Q 005342 380 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECR-TLL---LPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~-~l~---~~~~~~~~~v~~l~~spdg~ 454 (701)
.......+++||||++++++. .++.+.++|.. +.+.. .+. .+......++.++..+|...
T Consensus 76 -----------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~----tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 76 -----------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE----TLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp ------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT----T--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred -----------cCCCcceEEEcCCCCEEEEEecCCCceeEeccc----cccceeecccccccccccCCCceeEEecCCCC
Confidence 111256799999999998775 67999999987 33322 222 11222456788999999988
Q ss_pred EEEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEE
Q 005342 455 FLVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISI 529 (701)
Q Consensus 455 ~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~i 529 (701)
.++..-.| +.|.+.|.... ..+....+ ..........|+ +++++.+. ++.|.+
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~--------------------~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDP--------------------KNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp EEEEEETTTTEEEEEETTTS--------------------SCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred EEEEEEccCCeEEEEEeccc--------------------cccceeee--cccccccccccCcccceeeecccccceeEE
Confidence 66666554 77766654221 11111112 123456678888 78877765 689999
Q ss_pred EeCCCCcEEEEecC----CCCCeEEE-------EEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342 530 FSLETFQTLATFAN----PPPIATYF-------ILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (701)
Q Consensus 530 wd~~~~~~~~~~~~----~~~~i~~l-------~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s 595 (701)
+|.++++.+..+.. |..+...+ .|.. .+ ..++.-....+.+||..+.+.++++....++ .-+..+
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence 99999887766532 22222222 1221 22 2222233345667898999999999876666 777889
Q ss_pred cCCCEEEEE----eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECCCC
Q 005342 596 LSLNVLVSS----GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL 668 (701)
Q Consensus 596 pdg~~l~s~----s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~~g 668 (701)
|+++++... ...++|.++|.++.+ ...++..+.. ..+..+.|++||+.+..| .++.|.|||..|.
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~-----~~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLK-----VVKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTE-----EEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcc-----eeEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 999999887 456899999999953 2222322221 358999999999998875 3448999999999
Q ss_pred ceeeeeee
Q 005342 669 NHTSQVLL 676 (701)
Q Consensus 669 ~~~~~l~~ 676 (701)
+.++.++.
T Consensus 350 ~~~~~i~~ 357 (369)
T PF02239_consen 350 KEKKRIPV 357 (369)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEe
Confidence 99998874
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=146.95 Aligned_cols=289 Identities=12% Similarity=0.139 Sum_probs=206.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
++...|..|.+.|. .+.|+.. +.|..|.+||+.++..... +. .
T Consensus 133 ~l~~kL~~H~GcVn--tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------f~------------------S 182 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVN--TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------FE------------------S 182 (559)
T ss_pred hhhhcccCCCCccc--eeeecccCceeeccCccceEEeehhhccCcccc----------cc------------------c
Confidence 34456789999999 9999987 8999999999998876554 11 2
Q ss_pred CCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEE
Q 005342 391 DNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHK 466 (701)
Q Consensus 391 ~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~ 466 (701)
||.. |....|-|. .+.+++++.||.|++=.+.. ++.+...+ ....|.++|.-++.-|+.. -|.+++.|+.+.
T Consensus 183 GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~---t~~~e~t~-rl~~h~g~vhklav~p~sp~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 183 GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE---TGYVENTK-RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF 258 (559)
T ss_pred ccccchhhhhccCCCCCcCceeccccCceeeeeecc---ccceecce-ecccccCccceeeecCCCCCccccccccccee
Confidence 5666 777778774 56899999999999877653 44333212 2345889999999999765 578899999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC---CeEEEEec---CCEEEEEe-CCeEEEEeCCCCc---
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR---GSHLFSAS-GGKISIFSLETFQ--- 536 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~--- 536 (701)
-.|+.... ....++.. ..+.. ...+++.. -..+++++ |..+++||.+.-.
T Consensus 259 ~~Dlr~~~-----------------pa~~~~cr---~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 259 HIDLRQDV-----------------PAEKFVCR---EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred eeeeccCC-----------------ccceeeee---ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 88875532 22222221 12222 45667776 44677877 9999999986432
Q ss_pred ---EEEEecC------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC--C----------ceEE-eecCCCC--CeEE
Q 005342 537 ---TLATFAN------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT--K----------KTKA-KLKGHQN--RITC 591 (701)
Q Consensus 537 ---~~~~~~~------~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~--~----------~~~~-~l~~h~~--~V~~ 591 (701)
.+.++.. ..-.|++++++.++ -++++..|-.|+++.-.- | ..++ .++||.. .|..
T Consensus 319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence 1233322 24468999999888 777778888999995432 2 2233 3889875 5666
Q ss_pred EE-EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 592 LA-YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 592 v~-~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
+. |.|...|++|||+-|.|.||+-++++.+ . +..+.. ..|+|+.=+|--..||++ -|..|+||-..+-+
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-----~-~MegDr---~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-----R-FMEGDR---HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHH-----H-Hhhccc---ceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 64 5688999999999999999999997533 2 333443 789999999999999985 79999999885444
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=8.6e-13 Score=126.89 Aligned_cols=234 Identities=14% Similarity=0.249 Sum_probs=158.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE-EEECC------CcEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQT------ATHKL 467 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~-s~s~d------g~i~v 467 (701)
..+++|+.|..-++.|..+| .+||+.+-..+..+... ....-.+..+-|- .++++ +||.+ +.+.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-----~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-----IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-----ccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEE
Confidence 44689999998888887755 78999872221111000 0011122222222 23333 33322 45666
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCC-CCcEEEEecCC--
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANP-- 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~-~~~~~~~~~~~-- 544 (701)
|| -....++.. + ....+|.++.++...|++.-.+.|.+|... +.+.++.+...
T Consensus 80 WD---------------------D~k~~~i~e-l--~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 80 WD---------------------DLKERCIIE-L--SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred Ee---------------------cccCcEEEE-E--EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccC
Confidence 64 333333322 2 356789999999888888889999999987 45666666533
Q ss_pred CCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCe
Q 005342 545 PPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWK 619 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~-I~vwd~~~g~ 619 (701)
+...++++-+.+. .||. |..-|.|+|-|+...+. ...+..|.+.|.+++.+-+|.++||+|..|+ |||||..+|+
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 2334444333333 4444 66778999999986654 4677889999999999999999999999997 7999999997
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
+++ ++..|-.. ..|.+++|||++.+||++ +-|+++|+.+..
T Consensus 216 ~l~-----E~RRG~d~--A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 216 LLQ-----ELRRGVDR--ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred Eee-----eeecCCch--heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 543 23334332 789999999999999996 789999999865
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.1e-13 Score=147.30 Aligned_cols=260 Identities=19% Similarity=0.203 Sum_probs=182.7
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC---EEEEEECCCcEEEEecCCC
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~vwd~~~~ 473 (701)
...||+|+++++.+.. ..|.||... ++.|.. .+.+|..++..+.+.|... ++++++.||.|++||+..+
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~----Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTA----TGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecc----hHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 4568999999888776 689999998 787776 4567899999999988654 6779999999999999777
Q ss_pred Cc-----ccccccc-ce---------eeEEe-------e---CCCC----e-EEee------cccCCCCCCeEEEEec--
Q 005342 474 KQ-----SLEEENV-NM---------ESQLY-------Q---PSSK----L-VMTN------DIAADPKDSISCFALR-- 515 (701)
Q Consensus 474 ~~-----~~g~~~~-~~---------~i~~~-------d---~~~~----~-~~~~------~~~~~~~~~v~~l~~s-- 515 (701)
.. ..++..+ .. ...+| . .+.. . .+.+ ++...+.. -.++..+
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ 171 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNS 171 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCC
Confidence 65 0010000 00 00011 0 0000 0 0000 01112222 2455565
Q ss_pred CCEEEEEeCCeEEEEeCCCCcEEEEe-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CceEEeecCC
Q 005342 516 GSHLFSASGGKISIFSLETFQTLATF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLKGH 585 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~~~~~~~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----~~~~~~l~~h 585 (701)
|.+....-+..+.+|+..+.. .... ..|.-.+++.++||.+ ++|+|..||.|.+|.--. ....+.+.-|
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 555555557889999987754 1111 1345568999999999 999999999999996322 1234456668
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
...|++++|+++|.+|.|||..|.+.+|.+.++++.....+. ++|..+.+|||+...+.. .|+.|.+..
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg----------s~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG----------SPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCcccccccC----------CeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 889999999999999999999999999999998754433333 899999999999988875 899999998
Q ss_pred CCCCceeeeeee
Q 005342 665 APTLNHTSQVLL 676 (701)
Q Consensus 665 ~~~g~~~~~l~~ 676 (701)
..+.+...++.|
T Consensus 321 ~~dl~~k~tIsg 332 (792)
T KOG1963|consen 321 ASDLEIKSTISG 332 (792)
T ss_pred ccchhhhhhccC
Confidence 877665555544
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.5e-14 Score=151.65 Aligned_cols=225 Identities=13% Similarity=0.030 Sum_probs=149.1
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEe
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 489 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~ 489 (701)
+..|.+||.. ......+. .+...+.+..|||||+.|+.++.+ ..|.+||+
T Consensus 183 ~~~i~i~d~d----g~~~~~lt----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl------------------- 235 (429)
T PRK01742 183 PYEVRVADYD----GFNQFIVN----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDL------------------- 235 (429)
T ss_pred eEEEEEECCC----CCCceEec----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeC-------------------
Confidence 4789999986 33323322 356789999999999999988754 35777755
Q ss_pred eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe--EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE
Q 005342 490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK--ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 562 (701)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g 562 (701)
.++.... + ....+....++|+ |+.|+.+. +|. |++||+.++.. ..+..+...+...+|+||| .|+.+
T Consensus 236 --~tg~~~~--l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 236 --RSGARKV--V-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFT 309 (429)
T ss_pred --CCCceEE--E-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEE
Confidence 4443211 1 0112223467898 78777764 665 45567766654 4555566678899999999 66654
Q ss_pred e-CCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 563 F-DDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 563 s-~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+ .+|...||++.. +.....+ ++.+ .+..|+|||++|+.++.++ +.+||+.+|+.. .+. .. ...
T Consensus 310 s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~lt---~~-----~~~ 374 (429)
T PRK01742 310 SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---VLS---ST-----FLD 374 (429)
T ss_pred ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---Eec---CC-----CCC
Confidence 4 577777777543 2222333 3443 4578999999998887765 666999987532 111 11 123
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEEEEC--CCCceeeeeee----eeEEEEEee
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDVYEA--PTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~iwd~--~~g~~~~~l~~----i~~~~fs~~ 685 (701)
.++.|+|||++|+++ .++.+.+|++ .+|+.++.+.+ +...+|||.
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 467899999999985 7887777775 36888887764 788888875
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.9e-14 Score=136.44 Aligned_cols=230 Identities=12% Similarity=0.126 Sum_probs=162.2
Q ss_pred CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342 405 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (701)
Q Consensus 405 ~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~ 482 (701)
+.+|++-..|+|++||.. +++... .+.+++..+..+.|.. .+..+.+|+.||+|++||++....
T Consensus 41 ~~vav~lSngsv~lyd~~----tg~~l~---~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e------- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG----TGQLLE---EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE------- 106 (376)
T ss_pred eeEEEEecCCeEEEEecc----chhhhh---eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-------
Confidence 568888888999999998 554444 3445777778888876 456789999999999998754321
Q ss_pred ceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-----CCeEEEEeCCCCcE-EEEe-cCCCCCeEEEEE
Q 005342 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFIL 553 (701)
Q Consensus 483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-----dg~I~iwd~~~~~~-~~~~-~~~~~~i~~l~~ 553 (701)
..... .......+..|++.. ++.+++|+ +-.+.+||++..+. ++.+ ..|...|+++.|
T Consensus 107 ----------~a~~~---~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 107 ----------SARIS---WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred ----------hhhee---ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 11111 111223466677776 66777764 36799999988765 5544 568899999999
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeeeee---
Q 005342 554 LPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCS--- 623 (701)
Q Consensus 554 spdg--~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~--- 623 (701)
+|.. ++++||.||-|.+||+.... +.+++. |.+.|.++.|..++ +.|.+-+...+..+|+++.+.....
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 9999 99999999999999987542 233333 66779999998876 3577778888899998876542210
Q ss_pred -----------------------------------------------------eeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 624 -----------------------------------------------------KFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 624 -----------------------------------------------------~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
..+..+.+|| ...|+++.|...+.
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~---~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH---EEIVRDILFDVKND 329 (376)
T ss_pred ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc---HHHHHHHhhhcccc
Confidence 0011111222 25567777887788
Q ss_pred EEEEE-ecCeEEEEEC
Q 005342 651 HLLSI-HEGQIDVYEA 665 (701)
Q Consensus 651 ~l~sg-~Dg~I~iwd~ 665 (701)
++.+| .||.+.+|..
T Consensus 330 ~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeeccCCCceEEEEec
Confidence 89995 8999999985
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=5.2e-13 Score=148.24 Aligned_cols=267 Identities=10% Similarity=0.078 Sum_probs=176.4
Q ss_pred ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
|..|.. |..++.+++ +.+++|||.||+|++|+..+....+...+-..+......++.++...+.|..+|+++.||.|.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 677888 888888755 599999999999999999866544222221122223467899999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE-EEEec---CC-EEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR---GS-HLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~-~l~~s---~~-~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
+.+++.... .. ........ ......+.+. .-++. +. .++.+. -+.|..||+++.....+
T Consensus 1124 ~~~id~~~~---~~-----------~~~~~~ri-~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1124 VLRIDHYNV---SK-----------RVATQVRI-PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEcccccc---cc-----------ceeeeeec-ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 998744210 00 00011100 0001122333 33333 45 667777 69999999988776655
Q ss_pred ec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecC---CCEEEEEe--CCCeEE
Q 005342 541 FA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLS---LNVLVSSG--ADAQLC 611 (701)
Q Consensus 541 ~~--~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spd---g~~l~s~s--~D~~I~ 611 (701)
++ ...+.|++++.+|.+ ++++|+..|.+.+||++-+.++..+.. +..+++.+..+|- ....++++ ..+.|.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 54 235679999999999 999999999999999999998887763 5578888888873 24555544 478899
Q ss_pred EEECCCCeeeeeeeee-e-------ccCC--CCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 612 VWDAVGWKKLCSKFLH-S-------FQTG--LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~-~-------~~~~--~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
+|++.+|......... . .+.. ..++.-......+...+.++.+| .|..|+.||..+-+.
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 9999998543321111 0 0000 00111222333444445666775 899999999865443
No 202
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.8e-13 Score=139.27 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCc-eEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 391 DNNQ-SRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
+|+. -+.+..+|||+|+. +|...-.|++||+.++ .+.+.-......|.-.-.+-|-..++....|.+|.+-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 4555 77899999999865 5667789999999732 1111111224556666666676667777778877664
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEEecCCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~ 545 (701)
...|.....-+ ...-.+++++ -.+++.|+...|+-++++.|+.+..+....
T Consensus 122 ----------------------ak~G~hy~~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 122 ----------------------AKYGRHYRTRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred ----------------------hhcCeeeeeec----CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc
Confidence 23333222111 2234456666 344555558899999999999999998778
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC------CCC-----CeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~------h~~-----~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
+.++++.+++-. +|++|+.+|.|..||.++...+.++.. |.+ .|+++.|+.+|-.+++|+.+|.|.||
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY 255 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence 899999999999 999999999999999998776665542 333 49999999999999999999999999
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECCCCceeeeeee---eeEEEEEeeEEe
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIVVK 688 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~~~ 688 (701)
|+++.++. - +..+. ...+|..+.|.+. +..+++.+...++|||-.+|+....+.. ++.+|+-|..-.
T Consensus 256 DLRa~~pl-----~-~kdh~--~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 256 DLRASKPL-----L-VKDHG--YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred EcccCCce-----e-ecccC--CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence 99996433 2 21121 2278999999876 5667777888899999999999998887 888888776544
Q ss_pred e
Q 005342 689 F 689 (701)
Q Consensus 689 f 689 (701)
|
T Consensus 328 ~ 328 (703)
T KOG2321|consen 328 F 328 (703)
T ss_pred E
Confidence 4
No 203
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.57 E-value=1.1e-14 Score=135.92 Aligned_cols=160 Identities=22% Similarity=0.254 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch---------hHHHHHHHHhcCCHHHHHHHhccc--ccccCCcccceeh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFF---------NVHRFGEIVMNGEWEKAEKYLSAF--TKLDDSNHSKKMF 81 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~---------~~~~~~~~i~~G~w~~~~~~l~~~--~~~~~~~~~~~~~ 81 (701)
++|+.|||+.||-..||.++|+.+.+|+|+.. +...+|.+|..|+.++|+..+..+ +.++.+.- +.
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~---l~ 102 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE---LF 102 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh---HH
Confidence 89999999999999999999999999999987 288999999999999999999988 45665544 88
Q ss_pred hhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccchhhhhccCCCC--ChhHHHHHHHHHHhhh
Q 005342 82 FELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLLV 159 (701)
Q Consensus 82 ~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~i 159 (701)
|.+++|+++||++.|...+|++|+|++|+|++.-+++.++.|...|.+.-+.. ++..+... ..+.|.++++.++..|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~-~~~sp~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFEL-SQESPSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCC-cccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998878899999999888876643 33333222 5677999999988877
Q ss_pred ccccccccccccccccchHHHHHHH
Q 005342 160 KENRILQDKLIFPCVNNSALSSLIK 184 (701)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~RL~~Ll~ 184 (701)
-. +...+ -..+|..|++
T Consensus 182 L~------~~~~~--~~~~l~~llk 198 (228)
T KOG2659|consen 182 LA------SQEHE--SEPKLPFLLK 198 (228)
T ss_pred HH------Hhccc--ccchHHHHHH
Confidence 66 22211 2567888875
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.2e-14 Score=135.29 Aligned_cols=194 Identities=13% Similarity=0.182 Sum_probs=141.0
Q ss_pred CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEE
Q 005342 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 528 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~ 528 (701)
..++++.++|.|++||. .+++.+.. + .++...+..+.|. +..+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~---------------------~tg~~l~~-f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK---------------------GTGQLLEE-F-KGPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEec---------------------cchhhhhe-e-cCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 46888888999999965 55554432 2 4666677777776 56788888 99999
Q ss_pred EEeCCCCcEEEEe--cCCC-CCeEEEEEcCCC-eEEEEeC----CCcEEEEeCCCCce-EEeec-CCCCCeEEEEEec-C
Q 005342 529 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKT-KAKLK-GHQNRITCLAYSL-S 597 (701)
Q Consensus 529 iwd~~~~~~~~~~--~~~~-~~i~~l~~spdg-~l~~gs~----dg~I~iwd~~~~~~-~~~l~-~h~~~V~~v~~sp-d 597 (701)
+||+++......+ .+++ .+..+++..-.+ .+++|++ +-.+.+||++..+. +..+. .|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999987654433 3443 345677766566 8888864 34799999998765 55543 4999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC--CEEEEEecCeEEEEECCCCceeeeee
Q 005342 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
.++|+|||.||-|.+||++.... ...+..+. .+. ..|.++.|+.++ +....++.++..+|+++.|.....++
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~vi-N~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLHVI-NHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc--hhhHHHhh-ccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 67999999999999999987521 12222121 221 779999999887 54444799999999999887655554
Q ss_pred e
Q 005342 676 L 676 (701)
Q Consensus 676 ~ 676 (701)
.
T Consensus 252 ~ 252 (376)
T KOG1188|consen 252 N 252 (376)
T ss_pred C
Confidence 3
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=139.80 Aligned_cols=247 Identities=16% Similarity=0.161 Sum_probs=164.7
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC-----CCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-----SFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
.|.. |.++.|+.+...+.+++++..+.-|++.+ .....+.+|.. .|..+- +..=-.....++.+++||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~----~s~~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR----DSVEVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc----hhhhhhhCCcccCCcccccccc-ccCCCCCcceEEEEcCCce
Confidence 4555 88999999887777777666666666642 21112122211 110000 0000012246888899999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+.+.+- ++++-. .+ ..|.+++.+-.|+ |.-|++++ ||.|++|.- +|-...++
T Consensus 87 f~il~k----------------------~~rVE~-sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl 141 (737)
T KOG1524|consen 87 FVILNK----------------------SARVER-SI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV 141 (737)
T ss_pred EEEecc----------------------cchhhh-hh-hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH
Confidence 988742 222211 12 4789999999999 88888888 999999996 66665566
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
.....+|+|++|.|++ .++.+ ..+.+.|=-+.....+-.++.|.+-|.++.|+|..+.++||++|-..+|||.....
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~- 219 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN- 219 (737)
T ss_pred hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-
Confidence 6667889999999999 44433 34567776666666677789999999999999999999999999999999988742
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeeeeeEEEEEeeE
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHIMFVQIV 686 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~i~~~~fs~~~ 686 (701)
+- -... ++.+|++++|+|+ +.++.++-+++++=..+.|. |-.++||++.
T Consensus 220 -----Lf-~S~~---~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GS-------ifnlsWS~DG 268 (737)
T KOG1524|consen 220 -----LF-TSAA---EEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGS-------IFNLSWSADG 268 (737)
T ss_pred -----cc-cCCh---hccceeeeeeccc-cceeeeeeeeeeecCCCccc-------eEEEEEcCCC
Confidence 22 1112 2389999999999 66666555555533333222 5555665553
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7e-14 Score=142.61 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=155.9
Q ss_pred CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-
Q 005342 437 DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 515 (701)
Q Consensus 437 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s- 515 (701)
+.+|.+.|.|+.|+.||.+|++||.|-.+.|||. -..+++.. +..+|...|.++.|-
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~---------------------~~~Kllhs-I~TgHtaNIFsvKFvP 103 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP---------------------FEYKLLHS-ISTGHTANIFSVKFVP 103 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecc---------------------hhcceeee-eecccccceeEEeeec
Confidence 4589999999999999999999999999999965 33343322 557999999999997
Q ss_pred ---CCEEEEEe-CCeEEEEeCCCC----------cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 005342 516 ---GSHLFSAS-GGKISIFSLETF----------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 516 ---~~~l~s~s-dg~I~iwd~~~~----------~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
++.+++|. |..|+++|+... ...+.+..|...|..++..|++ .+.++++||+|+-+|++....-
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 56677887 999999999741 2344556788889999999999 8999999999999999873211
Q ss_pred -------Ee---ecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCC--------Ceeeee-----eeeeeccCCCCC
Q 005342 580 -------AK---LKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVG--------WKKLCS-----KFLHSFQTGLVP 635 (701)
Q Consensus 580 -------~~---l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~--------g~~~~~-----~~l~~~~~~~~~ 635 (701)
.. +.+.--...+++.+|. ..+|+.|+.|-..++||.+. |..... .++.-+..+|..
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 11 1111124678899994 55899999999999999432 110000 011112223321
Q ss_pred CC--------CCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342 636 ET--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 636 ~~--------~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l 674 (701)
.. ..++-+.|+|+|.-|+++ ....|+++|+..++....+
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 11 125778999999998887 5567999999887765444
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.9e-12 Score=125.05 Aligned_cols=258 Identities=12% Similarity=0.060 Sum_probs=164.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+..++|++.-..+|++..|..|++|+-.. .....++. .....|+|++|-|.+..-++.+..+-|.+|......
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks---~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKS---VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecc---hhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 56789999877889999999999999863 11122221 245789999999976544555555679999653221
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~ 550 (701)
. ....++.-....+++.. .++| .+|++++|. |..+++++ |..|.+||..++..+.......+.++-
T Consensus 174 n------~~r~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl 243 (445)
T KOG2139|consen 174 N------ANRNIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL 243 (445)
T ss_pred c------cccccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence 0 00000000001111221 1344 789999999 88899998 689999999998876655445677889
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeee-------
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKL------- 621 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~------- 621 (701)
+.||||| ++++++-|+..++|.....-......-..+.|...+|+|+|++|. +++....++--........
T Consensus 244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred EEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence 9999999 999999999999996544333333333456899999999999654 4444444333322211000
Q ss_pred -eeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE---ec------CeEEEEECCCCc
Q 005342 622 -CSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI---HE------GQIDVYEAPTLN 669 (701)
Q Consensus 622 -~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg---~D------g~I~iwd~~~g~ 669 (701)
....+. ++.++..--.+++.+++|.|.|.++|+. .+ ..|.+||....-
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 000110 0122211123678999999999999985 22 236778875543
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.9e-14 Score=153.24 Aligned_cols=248 Identities=14% Similarity=0.183 Sum_probs=188.2
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
|.+|.+ |.|+.|...|.++++|+.|..++||..+ ++.|.. ...+|.+.|+.++.+.+..++++++.|..|++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeecc----chhhhc---cCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 679999 9999999999999999999999999987 777766 66789999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec---
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--- 542 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~--- 542 (701)
|.+ .++..+. +..+|++.|++++|+ -. +.+ ||++++||.+ ...+....
T Consensus 259 Wrl---------------------~~~~pvs--vLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y~prp~ 311 (1113)
T KOG0644|consen 259 WRL---------------------PDGAPVS--VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIYVPRPL 311 (1113)
T ss_pred Eec---------------------CCCchHH--HHhccccceeeeccCccc---cCCCCCceEecccc-ccccccCCCCC
Confidence 955 5555443 225899999999999 32 444 8999999987 11111110
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCC
Q 005342 543 --NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 543 --~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D~~I~vwd~~~g 618 (701)
....-+.++.+-..+ -+++|+.|+.-..|.... +.+|...+.-+.++.|. .+.+++-.+..+++|++.+|
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 123456777777788 899999999888876532 12233333333444333 46777888899999999997
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--EecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
.. ++ ...+|. ..+..+.++|-+..++- |.||...|||+-.|..++.+.- +..-.||++
T Consensus 386 ~l-----~H-~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 386 QL-----LH-NLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred hh-----hh-hhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 42 23 444776 88999999998877774 5899999999999988776653 556666666
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.1e-12 Score=136.42 Aligned_cols=226 Identities=11% Similarity=0.047 Sum_probs=148.8
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..+.+||.. ......+.. +...+.+.+|||||+.|+..+. +..+.+|++
T Consensus 179 ~~l~~~d~d----g~~~~~lt~----~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-------------------- 230 (429)
T PRK03629 179 YELRVSDYD----GYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-------------------- 230 (429)
T ss_pred eeEEEEcCC----CCCCEEeec----CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--------------------
Confidence 468888886 444344332 4568999999999999887653 245666644
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
.+|+... + ......+...+|+ |+.|+.. + +| .|++||+++++..+. ..+...+....|+||| .|+..+
T Consensus 231 -~~G~~~~--l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 231 -ANGAVRQ--V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred -CCCCeEE--c-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence 4444221 1 1122334567898 8777755 3 44 699999988766543 3345567889999999 777666
Q ss_pred CC-C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 564 DD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 564 ~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
.+ + .|+++|+.+++.. .+..+........|+|||++++..+.+ ..|++||+.+++. ..+. ..
T Consensus 306 ~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt---~~----- 373 (429)
T PRK03629 306 DQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLT---DT----- 373 (429)
T ss_pred CCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEeC---CC-----
Confidence 54 3 5666677776543 344344456678999999998876543 3689999998752 2222 11
Q ss_pred CCeEEEEEcCCCCEEEEE-ecC---eEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 638 TIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
.......|+|||++|+.+ .++ .+.++++ +|+..+.+.+ +...+|||.
T Consensus 374 ~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 374 FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 223467899999999874 444 3778888 5655565644 788888873
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4e-12 Score=138.46 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCc--EEEE
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTAT--HKLW 468 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~--i~vw 468 (701)
+.+.+|+|||+.|+.++.+ ..+.+|++. +++...+.. ..+...+..|+|||+.++. .+.+|. |.+|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~----~g~~~~l~~----~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLA----TGQRELVAS----FRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECC----CCCEEEecc----CCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 7789999999999987643 469999997 565544331 2344557899999998764 455554 5555
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC--eEEEEeCCCCcEEEEec
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFA 542 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg--~I~iwd~~~~~~~~~~~ 542 (701)
|..++.... + ..+.......+|+ |+.++.++ +| .|+++|+.+++... +.
T Consensus 278 ---------------------d~~~g~~~~--l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt 332 (433)
T PRK04922 278 ---------------------DLGSRQLTR--L-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT 332 (433)
T ss_pred ---------------------ECCCCCeEE--C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee
Confidence 555555432 2 1333445677888 88887776 34 47778887765433 32
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEC
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDA 615 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~ 615 (701)
.........+|+||| .|+..+.++ .|++||+.+++.. .+. +........|+|||++++..+.+ +.|+++++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 233344578999999 777655443 6999999888765 343 22345567999999988876653 46888888
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
..+.. .. +..+. +.+..++|+|
T Consensus 411 ~g~~~---~~---l~~~~----g~~~~p~wsp 432 (433)
T PRK04922 411 DGRVR---QR---LVSAD----GEVREPAWSP 432 (433)
T ss_pred CCCce---EE---cccCC----CCCCCCccCC
Confidence 66421 22 22121 5567778887
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=2.8e-12 Score=123.37 Aligned_cols=221 Identities=9% Similarity=0.075 Sum_probs=156.4
Q ss_pred cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342 326 IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE 397 (701)
Q Consensus 326 h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~ 397 (701)
-...|+ |.+|++| ...+.+.||.....+.-.. .+.|..|+. |+.
T Consensus 9 ~~~pit--chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~--------------------------~htls~Hd~~vtg 60 (361)
T KOG1523|consen 9 LLEPIT--CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP--------------------------AHTLSEHDKIVTG 60 (361)
T ss_pred ccCcee--eeeecCCCceEEeccCCceEEEEEecCCCCcee--------------------------ceehhhhCcceeE
Confidence 345688 9999998 4445677776554432221 334678999 999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
+.|+|.++.|++|+.|..-++|...+ .+. ++-.+..-.+...++++.|+|.++.|++||....|.||-++
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~---~~~-WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E------ 130 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPS---GGT-WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE------ 130 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCC---CCe-eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe------
Confidence 99999999999999999999999841 332 22121122367899999999999999999999999999653
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC-EEEEEe-CCeEEEEeCC-----C-------------Cc
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLE-----T-------------FQ 536 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~-~l~s~s-dg~I~iwd~~-----~-------------~~ 536 (701)
-++.--+.+.+...+.+.|.+++|. ++ .++.|+ |+..+++..- + |+
T Consensus 131 -------------~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~ 197 (361)
T KOG1523|consen 131 -------------QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ 197 (361)
T ss_pred -------------cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH
Confidence 3333334344555678899999999 44 566777 9999988631 1 11
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEecC
Q 005342 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~spd 597 (701)
.+..+....+.+..+.|+|+| .|+-.+.|+.+.+-|..... .+.....-.-+..++.|-.+
T Consensus 198 lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 198 LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 223333456789999999999 99999999999999976553 33333333356666666543
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=8.7e-13 Score=129.39 Aligned_cols=243 Identities=11% Similarity=0.096 Sum_probs=165.4
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc-cc--C
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC-FN--D 391 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~-l~--~ 391 (701)
.+.+|.+.|. ++.||.+ +.|..+++|++..--..++ ++.+ ++ .
T Consensus 51 D~~~H~GCiN--AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------------------~KPI~~~~~~ 103 (609)
T KOG4227|consen 51 DVREHTGCIN--ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------------------------PKPIGVMEHP 103 (609)
T ss_pred hhhhhccccc--eeeeccCCeEEeecCCcceeeeechHHHHhhcC-------------------------CCCceeccCc
Confidence 4578999999 9999998 8899999999864332222 1111 22 4
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|.. |.+++|....+.+.+|+.+++|...|++ +.+...+. ......+.|..+..+|..+.+++.+.+|.|.+||.
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE----t~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIE----TKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecc----cceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEec
Confidence 545 9999999999999999999999999998 44433322 12234568999999999999999999999999997
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc----------
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---------- 536 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~---------- 536 (701)
..... .+.++ +.........++.|+ ..+|++++ .+.+-+||++...
T Consensus 179 Rd~~~-----------------~~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 179 RDRQN-----------------PISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred cCCCC-----------------CCcee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 54321 11111 101222334444444 34455555 4555666654211
Q ss_pred ----------------------------------------EEEEecCCC-------CCeEEEEEcCCCeEEEEeCCCcEE
Q 005342 537 ----------------------------------------TLATFANPP-------PIATYFILLPQDLFAFGFDDSSIL 569 (701)
Q Consensus 537 ----------------------------------------~~~~~~~~~-------~~i~~l~~spdg~l~~gs~dg~I~ 569 (701)
.+-.+. |. ..+.+++|..|-.+++|+.+-.|+
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~ 317 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIH 317 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceE
Confidence 001111 11 123445555444789999999999
Q ss_pred EEeCCC-----C------------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 570 VHCPCT-----K------------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 570 iwd~~~-----~------------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+|.+.. | +....++||.+.++.|.|+|...+|++.+-.+.+++|.-..
T Consensus 318 ~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 318 IWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 998742 1 12457889999999999999999999999999999997543
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=7.1e-13 Score=127.55 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...+.-++|++|. ++++-.+. +.+.+||++..+.-..+. ...+|....|+|....|+.+.....+++|....-
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~--- 393 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--- 393 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc---
Confidence 3456789999999 77775443 379999998877655544 5568999999999888888888889999998763
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 658 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg 658 (701)
..+. ++... ..|..+.|+-+|..++. |.|.
T Consensus 394 --~~V~-vP~~G----F~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 394 --RVVG-VPKKG----FNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred --eEEe-cCCCC----ceeeeEEecCCCcEEEEEcCCc
Confidence 2222 22111 67999999999998887 4554
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.3e-12 Score=135.81 Aligned_cols=208 Identities=12% Similarity=0.021 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCeEEEEc---CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCc--EEEE
Q 005342 395 SRESTSLPDADSAVCAK---SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTAT--HKLW 468 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s---~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~--i~vw 468 (701)
+.+.+|||||+.|+..+ .+..+.+|++. +++...+.. ..+.+....|+|||+.|+... .+|. |.+|
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~----~G~~~~l~~----~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQVAS----FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECC----CCCeEEccC----CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 78899999999998754 34578899987 565444331 223445689999999888654 3554 4455
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEec
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFA 542 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~ 542 (701)
|..++.... +. .+...+....|+ |+.|+..+ + + .|+++|+.++... .+.
T Consensus 273 ---------------------d~~tg~~~~--lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt 327 (429)
T PRK03629 273 ---------------------DLASGQIRQ--VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT 327 (429)
T ss_pred ---------------------ECCCCCEEE--cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence 555555433 21 233456788899 88887776 3 3 5666677766543 333
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCe---EEEEEC
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ---LCVWDA 615 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~---I~vwd~ 615 (701)
..........|+||| .|+..+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.++. ++++++
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 344455678999999 77665543 36889999888654 34321 22346789999999998887764 778888
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
..+.. .. +. ++. +.+..++|+|
T Consensus 406 ~G~~~---~~---l~-~~~---~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFK---AR---LP-ATD---GQVKFPAWSP 427 (429)
T ss_pred CCCCe---EE---Cc-cCC---CCcCCcccCC
Confidence 65421 22 32 333 6788889987
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=135.21 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=141.5
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCcE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATH 465 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i 465 (701)
.|.. +.+.+|+|||+.|+..+. +..|.+|++. +++...+. .+.+.+.+.+|+|||+.|+. .+.+|..
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~----~g~~~~l~----~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE----TGQRELVG----NFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC----CCcEEEee----cCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 4455 889999999999988753 4689999997 66555443 23456778899999998764 4556665
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLA 539 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~ 539 (701)
.+|- +|..++.... + ..+.......+|+ |+.++..+ + ..|+++|+.++...
T Consensus 271 ~Iy~-------------------~d~~~~~~~~--L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~- 327 (435)
T PRK05137 271 DIYT-------------------MDLRSGTTTR--L-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR- 327 (435)
T ss_pred eEEE-------------------EECCCCceEE--c-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence 5552 2555555432 2 2344456678888 88887766 2 37889998766543
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------Ce
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQ 609 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~ 609 (701)
.+......+....|+||| .|+..+.+ ..|.+||+.++.. ..+. ....+....|+|||++|+..+.+ ..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 343344556778999999 77766543 3688999865543 3343 22346788999999988765543 36
Q ss_pred EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
++++|+..+.. .. +... +.+...+|+|-
T Consensus 406 L~~~dl~g~~~---~~---l~~~-----~~~~~p~Wsp~ 433 (435)
T PRK05137 406 LYTVDLTGRNE---RE---VPTP-----GDASDPAWSPL 433 (435)
T ss_pred EEEEECCCCce---EE---ccCC-----CCccCcccCCC
Confidence 88889877542 22 2211 44567788873
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=9.7e-14 Score=139.25 Aligned_cols=223 Identities=12% Similarity=0.191 Sum_probs=174.4
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 396 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
..+.++.+|+.++.|+..|.+-.+|.. +..... +. -...|.++.|..+..+++++ ....+.|||-
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~----t~~L~~Ei~-----v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~---- 198 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWV----TKKLHFEIN-----VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN---- 198 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecc----cceeeeeee-----hhhhhhhhhhhcchHHHHhh-hhceEEEecC----
Confidence 468899999999999999999999997 444332 22 25678999999998876664 5577888853
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCE-EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~-l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
..-++.. +. ....|..+.|- -.+ |++++ .|.++--|+.+|+.+..+....+.+..+
T Consensus 199 -----------------~GtElHC--lk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 199 -----------------NGTELHC--LK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM 257 (545)
T ss_pred -----------------CCcEEee--hh--hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh
Confidence 2222221 21 23567777777 444 55556 6999999999999999998888889999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
+-+|-+ .+-+|..+|+|.+|.....+++-.+-.|.++|.++++.++|+|+||++.|..++|||+++-. .+.++.
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-----ql~t~~ 332 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-----QLHTYR 332 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-----ccceee
Confidence 999999 99999999999999999988888888899999999999999999999999999999999843 222122
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEE
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 664 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd 664 (701)
. + .+...+++|..| +||.|....+.||.
T Consensus 333 t---p--~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 333 T---P--HPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred c---C--CCcccccccccc-ceeeecCCeeeeeh
Confidence 2 1 567788888765 56667667789995
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.7e-10 Score=113.40 Aligned_cols=188 Identities=11% Similarity=0.115 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCeEEEEcCC--CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d--~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
|-.+-|+.. ++|..+.+ ..+++.++.. ...+..+.+ ...|.++.++.+ +|+++-.+. |+|||+
T Consensus 49 IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk---~~~ICe~~f-----pt~IL~VrmNr~--RLvV~Lee~-IyIydI-- 113 (391)
T KOG2110|consen 49 IVEMLFSSS--LVAIVSIKQPRKLKVVHFKK---KTTICEIFF-----PTSILAVRMNRK--RLVVCLEES-IYIYDI-- 113 (391)
T ss_pred EEEeecccc--eeEEEecCCCceEEEEEccc---CceEEEEec-----CCceEEEEEccc--eEEEEEccc-EEEEec--
Confidence 555556655 55555444 3477887762 222333333 577888888754 566655543 888865
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCCcEEEEecCCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
.+-+++.. +.. .+...+.+++++ +.+++.-+ .|.|.+||..+-+.+..+..|.
T Consensus 114 -------------------~~MklLhT-I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~ 173 (391)
T KOG2110|consen 114 -------------------KDMKLLHT-IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK 173 (391)
T ss_pred -------------------ccceeehh-hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence 44444332 211 344557777777 66888755 4999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCc-EEEEeCCCCceEEeecCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 546 PIATYFILLPQD-LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~-I~iwd~~~~~~~~~l~~h~--~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+++-+++|+++| ++|++|+.|+ ||++++.+|+.+.+|+-.. ..|.+++|+|++++|++.|..++|.||.+..
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999 9999999995 7999999999999997433 3688999999999999999999999998865
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.5e-12 Score=135.40 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~ 470 (701)
+.+.+|+|||+.|+..+.+ ..|.+||+. +++...+.. ..+.+.+.+|+|||+.|+. .+.+|...+|.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~----~g~~~~l~~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLA----TGRRRVVAN----FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECC----CCCEEEeec----CCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 7789999999999887643 459999997 665544431 2345668899999998875 566888888855
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEE--eCCCCcEEEEecCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIF--SLETFQTLATFANP 544 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iw--d~~~~~~~~~~~~~ 544 (701)
|..++.... + ..+........|+ |+.++..+ +|...+| |..++.... +...
T Consensus 270 -------------------d~~~~~~~~--l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~ 326 (427)
T PRK02889 270 -------------------NADGSGLRR--L-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT 326 (427)
T ss_pred -------------------ECCCCCcEE--C-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC
Confidence 555444322 2 1233445667888 88877666 3555555 555554322 2222
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCC
Q 005342 545 PPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVG 617 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~ 617 (701)
.......+|+||| +|+..+.++ .|++||+.+++... +..+ .......|+|||++|+.++.++ .+++.++..
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 2334568899999 877766554 69999998887544 3322 3346789999999888777544 466666643
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
.. ...+. .+. +.+...+|+|-
T Consensus 405 ~~---~~~l~----~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 405 RI---KQRLS----VQG---GDVREPSWGPF 425 (427)
T ss_pred Cc---eEEee----cCC---CCCCCCccCCC
Confidence 21 12222 221 55677888874
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4e-13 Score=133.99 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=137.7
Q ss_pred EEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-
Q 005342 510 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 584 (701)
Q Consensus 510 ~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~- 584 (701)
.+++++ |..+++++ ||.+|+|+......+.....|...|.++.|+||| +|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 577787 79999999 9999999988888777778899999999999999 99999999 999999999977766552
Q ss_pred -CCCCeEEEEEecCC-----CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342 585 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (701)
Q Consensus 585 -h~~~V~~v~~spdg-----~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D 657 (701)
.......+.|+.|+ ...+....-+.|+.||+..+..-..-...+....+ ..|.+++.|+||++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 22356777888876 23334445667888877765321111222122233 689999999999999997 79
Q ss_pred CeEEEEECCCCceeeeeee-----eeEEEEEeeEEeeee
Q 005342 658 GQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKFHS 691 (701)
Q Consensus 658 g~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f~~ 691 (701)
|.|-|++..+.+.++-.+. ||++.|+|+....-+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 9999999999998887776 999999998765544
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2e-11 Score=133.09 Aligned_cols=226 Identities=13% Similarity=0.139 Sum_probs=151.1
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..|.+||.. +.....+. .+...+.+..|+|||+.|+..+. +..|.+||+
T Consensus 182 ~~l~~~d~d----g~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl-------------------- 233 (435)
T PRK05137 182 KRLAIMDQD----GANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL-------------------- 233 (435)
T ss_pred eEEEEECCC----CCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC--------------------
Confidence 467788875 44444433 25678999999999999988764 356777754
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
.++.... + ..+.+.+.+.+|+ |+.|+. .+ ++ .|++||+.++.. ..+..+........|+||| .|+..+
T Consensus 234 -~~g~~~~--l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 234 -ETGQREL--V-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred -CCCcEEE--e-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence 4444321 1 1344566778898 777654 44 44 588889987765 4455455566789999999 777666
Q ss_pred C-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 564 D-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 564 ~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
. +| .|+++|+.+++.. .+..+.+.+....|+|||++|+..+.+ ..|.+||+.++.. ..+. .+
T Consensus 309 ~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt---~~----- 376 (435)
T PRK05137 309 DRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILT---SG----- 376 (435)
T ss_pred CCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---Eecc---CC-----
Confidence 4 33 6899998776554 343345556778999999999876643 4689999876531 2221 12
Q ss_pred CCeEEEEEcCCCCEEEE-Ee-c-----CeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 638 TIVNHIQFHPDQIHLLS-IH-E-----GQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~s-g~-D-----g~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
..+..+.|+|||++|+. +. . ..++++|+..+.. +.+.. +...+|||.
T Consensus 377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 33567899999999876 32 2 3588888865544 44433 777788764
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.3e-11 Score=134.33 Aligned_cols=225 Identities=13% Similarity=0.073 Sum_probs=146.5
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..|.+||.. ......+. .+...+.+.+|+|||+.|+.++.+ ..+.+||+
T Consensus 184 ~~l~i~D~~----g~~~~~lt----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl-------------------- 235 (433)
T PRK04922 184 YALQVADSD----GYNPQTIL----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL-------------------- 235 (433)
T ss_pred EEEEEECCC----CCCceEee----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEEC--------------------
Confidence 468888875 44334433 256678999999999999988753 35777754
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
.+++... + ....+...+.+|+ |+.++. .+ +| .|++||+.+++.. .+..+.......+|+||| .++.++
T Consensus 236 -~~g~~~~--l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 236 -ATGQREL--V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred -CCCCEEE--e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE
Confidence 4444221 1 1223344567888 776654 34 44 6999999887653 444455555788999999 777666
Q ss_pred C-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 564 D-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 564 ~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
. +| .|+++|+.+++... +..+.......+|+|||++++..+.++ .|++||+.+++.. . +..+
T Consensus 311 d~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---~---Lt~~----- 378 (433)
T PRK04922 311 DRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---T---LTPG----- 378 (433)
T ss_pred CCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---E---CCCC-----
Confidence 4 44 47888887776433 322333455789999999998765433 6999999887522 2 2212
Q ss_pred CCeEEEEEcCCCCEEEEE-e---cCeEEEEECCCCceeeeee---e-eeEEEEEe
Q 005342 638 TIVNHIQFHPDQIHLLSI-H---EGQIDVYEAPTLNHTSQVL---L-ISHIMFVQ 684 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~---Dg~I~iwd~~~g~~~~~l~---~-i~~~~fs~ 684 (701)
.....+.|+|||++++.+ . .+.|.+++.. |...+.+. + +...+|||
T Consensus 379 ~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 379 SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 233467899999998864 3 2458888884 44444443 2 77777876
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=1.4e-13 Score=138.09 Aligned_cols=209 Identities=11% Similarity=0.110 Sum_probs=171.2
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l 519 (701)
-....+.++.+|++++.|+.-|.+..+|+ .++.+... + .-...|.++.|- .+++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw---------------------~t~~L~~E-i--~v~Etv~Dv~~LHneq~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDW---------------------VTKKLHFE-I--NVMETVRDVTFLHNEQFF 185 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeec---------------------ccceeeee-e--ehhhhhhhhhhhcchHHH
Confidence 34567889999999999999999999977 44444321 1 224567888887 6777
Q ss_pred EEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342 520 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 520 ~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg 598 (701)
|++....++|||- .|..++.+.. ...+..+.|-|.. ++++++..|.+.--|+.+|+.+..+....+.+..++-+|-+
T Consensus 186 AVAQK~y~yvYD~-~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 186 AVAQKKYVYVYDN-NGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred HhhhhceEEEecC-CCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 8887899999996 6777887774 4578999999999 99999999999999999999999998888889999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee-
Q 005342 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL- 676 (701)
Q Consensus 599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~- 676 (701)
..+-+|...|+|.+|...+.+ ++-.+..+. ++|.+|++.++|+++++ |-|..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~ske-----PLvKiLcH~----g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKE-----PLVKILCHR----GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred ceEEEcCCCceEEecCCCCcc-----hHHHHHhcC----CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC
Confidence 899999999999999999853 444355454 99999999999999999 6899999999998877666654
Q ss_pred --eeEEEEEee
Q 005342 677 --ISHIMFVQI 685 (701)
Q Consensus 677 --i~~~~fs~~ 685 (701)
.+.++||.-
T Consensus 335 ~~a~~ls~Sqk 345 (545)
T KOG1272|consen 335 HPASNLSLSQK 345 (545)
T ss_pred CCccccccccc
Confidence 566666543
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=9e-12 Score=119.17 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=95.6
Q ss_pred EEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE
Q 005342 527 ISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFA--FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (701)
Q Consensus 527 I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg-~l~--~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~ 602 (701)
+..++... ..+..+.- ..++|.+++|+|+| .+| .|..++.|.+||++ ++.+..+. ...++.+.|+|+|++|+
T Consensus 41 l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 41 LFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLV 116 (194)
T ss_pred EEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEE
Confidence 34444433 33444432 34569999999999 543 45567899999996 66666664 56789999999999999
Q ss_pred EEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e-----cCeEEEEECCCCceee
Q 005342 603 SSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-----EGQIDVYEAPTLNHTS 672 (701)
Q Consensus 603 s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~-----Dg~I~iwd~~~g~~~~ 672 (701)
+++.+ |.|.+||+++.+.+ .+. .| ..++.++|+|||++++++ . |+.++||+. +|+.+.
T Consensus 117 ~~g~~n~~G~l~~wd~~~~~~i-----~~~--~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~ 184 (194)
T PF08662_consen 117 LAGFGNLNGDLEFWDVRKKKKI-----STF--EH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLY 184 (194)
T ss_pred EEEccCCCcEEEEEECCCCEEe-----ecc--cc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeE
Confidence 98754 67999999975432 211 22 557899999999999984 2 788999998 577665
Q ss_pred ee
Q 005342 673 QV 674 (701)
Q Consensus 673 ~l 674 (701)
..
T Consensus 185 ~~ 186 (194)
T PF08662_consen 185 KK 186 (194)
T ss_pred ec
Confidence 44
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=132.62 Aligned_cols=260 Identities=14% Similarity=0.088 Sum_probs=185.4
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i 465 (701)
|.+|.+ |+.+.|...|..|++|+.|..|.+||.. .+. ..+.+ ..+|...|..-.|-|. .+.+++++.||.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~----~~~-~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV----SGS-PKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhh----ccC-ccccc-ccccccchhhhhccCCCCCcCceeccccCce
Confidence 789999 9999999999999999999999999997 332 12222 2468888888888774 4578999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEE-eecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
++=.+ +.++.+. ++ ....|.++|.-++.. ..-+.+++ |+.+.-+|++++.....
T Consensus 212 r~s~i--------------------~~t~~~e~t~-rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 212 RVSEI--------------------LETGYVENTK-RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred eeeee--------------------ccccceecce-ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 98754 1233322 11 114688899988887 55677777 99999999988765443
Q ss_pred ec---CCCC---CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc------eEEeecCC------CCCeEEEEEecCCCE
Q 005342 541 FA---NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKGH------QNRITCLAYSLSLNV 600 (701)
Q Consensus 541 ~~---~~~~---~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~------~~~~l~~h------~~~V~~v~~spdg~~ 600 (701)
+. .+.. ....++..|.. .+++|+.|..+++||.+.-. .+..+..| .-.|++++|+.++.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 32 2222 45889999988 99999999999999987532 22333222 236999999977665
Q ss_pred EEEEeCCCeEEEEECCCCee---ee----eeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEEE-ecCeEEEEECCCCcee
Q 005342 601 LVSSGADAQLCVWDAVGWKK---LC----SKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSI-HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~g~~---~~----~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~sg-~Dg~I~iwd~~~g~~~ 671 (701)
+.++-.|-.|+++....+.- .. ....+.+..||... ..|-++-| -|...++++| +-|.|.||+-.+++.+
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 55555677899996554421 00 01222234577532 34677765 6889999998 6689999999999998
Q ss_pred eeeee
Q 005342 672 SQVLL 676 (701)
Q Consensus 672 ~~l~~ 676 (701)
+.+.+
T Consensus 430 ~~Meg 434 (559)
T KOG1334|consen 430 RFMEG 434 (559)
T ss_pred HHhhc
Confidence 88887
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.6e-10 Score=111.45 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=124.5
Q ss_pred CcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342 414 EKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~ 492 (701)
..|.|||-. ...+ ..+. -..+|.++.++++- |++. ..+.|.||.+..+ +.
T Consensus 75 NkviIWDD~----k~~~i~el~-----f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n-----------------~k 125 (346)
T KOG2111|consen 75 NKVIIWDDL----KERCIIELS-----FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDN-----------------PK 125 (346)
T ss_pred ceEEEEecc----cCcEEEEEE-----eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCC-----------------hh
Confidence 479999943 2222 2223 25789999998763 4443 4578999976432 11
Q ss_pred CCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEEeCC
Q 005342 493 SKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFDD 565 (701)
Q Consensus 493 ~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~gs~d 565 (701)
--..+. ....+ ....+++-. ..+||.-+ -|.|.+-|+...+. ...+..|.+.|.|++.+-+| .+|++|..
T Consensus 126 ~l~~~e--t~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 126 LLHVIE--TRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred heeeee--cccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence 111111 11112 224444444 34555555 49999999876554 46778899999999999999 99999999
Q ss_pred Cc-EEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 566 SS-ILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 566 g~-I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
|+ |+|||..+|+.+++++- ....|.+++|||++.+||.+|+.|++.|+.++..
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 96 79999999999999874 3347999999999999999999999999998863
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=133.32 Aligned_cols=214 Identities=11% Similarity=0.066 Sum_probs=146.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i 465 (701)
|.||.+ |+++.|+.||.+|++|+.|-.+.|||.- ..+... .-..+|...|.++.|-|- .+.+++|..|..|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~----~~Kllh--sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF----EYKLLH--SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecch----hcceee--eeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 789999 9999999999999999999999999986 222111 123579999999999984 4578899999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEE-E-
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL-A- 539 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~-~- 539 (701)
+++|+...+. |. .+.|...+...-..|...|..++.- .+.+.+++ ||+|+-+|++....- .
T Consensus 120 ~lfdl~~~~~--~~-----------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 120 KLFDLDSSKE--GG-----------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred EEEecccccc--cc-----------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 9999854221 00 0011111100113567777777776 36788888 999999999863211 1
Q ss_pred --------EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------Cc----------eEEeec-CCC----
Q 005342 540 --------TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------KK----------TKAKLK-GHQ---- 586 (701)
Q Consensus 540 --------~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--------~~----------~~~~l~-~h~---- 586 (701)
.+.+.--...++.++|.. ++|+|+.|-..++||.+. +. ++..+. +|-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 111112245789999998 999999999999999431 11 122221 222
Q ss_pred -------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 587 -------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 587 -------~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
..++-++|+|+|.-|...=..-.|+++|+..++..
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 12566799999874443333348999999987543
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.6e-10 Score=113.15 Aligned_cols=272 Identities=13% Similarity=0.121 Sum_probs=166.7
Q ss_pred EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCC-
Q 005342 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDAD- 405 (701)
Q Consensus 334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~- 405 (701)
.++|++. ..|-+|++||-.. ++... ++.. ...+|.+++|-|.+.
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~----------Lks~-----------------sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK----------LKSV-----------------SQRNVTCLAWRPLSAS 154 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC-CCCce----------ecch-----------------hhcceeEEEeccCCcc
Confidence 5666665 7889999998665 33322 1111 122399999999765
Q ss_pred eEEEEcCCCcEEEEeccccCCCCce------eEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccc
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSEC------RTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 477 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~------~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~ 477 (701)
.|+.|.. +.|.+|........++. .... +...+| ..|+++.|.+||..+++++. |..|.|||
T Consensus 155 elavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWd-------- 224 (445)
T KOG2139|consen 155 ELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWD-------- 224 (445)
T ss_pred eeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEc--------
Confidence 5555555 77999987632111111 0001 112234 78999999999999999987 68899984
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEEEEecCCCCCeEEEEE
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL 553 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~ 553 (701)
++++..+. +.....+.++-+.|| |+++.+++ |+..++|+... ....+-.- ..+.|...+|
T Consensus 225 -------------pdtg~~~p--L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacW 288 (445)
T KOG2139|consen 225 -------------PDTGQKIP--LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACW 288 (445)
T ss_pred -------------CCCCCccc--ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeee
Confidence 45555443 222345678899999 88998888 99999996543 33333333 3458999999
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCC--c-----------eEEee------cC---CCCCeEEEEEecCCCEEEEEeCC--
Q 005342 554 LPQD--LFAFGFDDSSILVHCPCTK--K-----------TKAKL------KG---HQNRITCLAYSLSLNVLVSSGAD-- 607 (701)
Q Consensus 554 spdg--~l~~gs~dg~I~iwd~~~~--~-----------~~~~l------~~---h~~~V~~v~~spdg~~l~s~s~D-- 607 (701)
+|+| ++++.+..-.++-...... . ++..+ .+ --+.+.+++|.|.|.+||+.-..
T Consensus 289 spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 9999 5555554444433221110 0 11111 11 13578999999999999986543
Q ss_pred ------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEE-ecCeEEEEEC
Q 005342 608 ------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 608 ------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg-~Dg~I~iwd~ 665 (701)
..|.+||.+........... +..+. .-..++|+| +|++|..+ +.|.+.-|++
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg-~i~ge-----~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCG-MIGGE-----YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecc-cccCC-----CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 34778888764333222222 22222 234566666 35666666 6777776665
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3e-11 Score=131.19 Aligned_cols=226 Identities=15% Similarity=0.051 Sum_probs=140.2
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..+.++|.. ......+. .+...+.+.+|+|||+.|+..+.+ ..|.+||
T Consensus 176 ~~L~~~D~d----G~~~~~l~----~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~d--------------------- 226 (427)
T PRK02889 176 YQLQISDAD----GQNAQSAL----SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHD--------------------- 226 (427)
T ss_pred cEEEEECCC----CCCceEec----cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEE---------------------
Confidence 356666664 33223322 256778999999999999887753 3466664
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEE-Ee-CCe--EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GGK--ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s-~s-dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
..+++... + ....+.+.+.+|+ |+.|+. .+ +|. |+++|..++. ...+..+........|+||| .++..+
T Consensus 227 l~~g~~~~--l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s 302 (427)
T PRK02889 227 LATGRRRV--V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS 302 (427)
T ss_pred CCCCCEEE--e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe
Confidence 45554322 1 1223455678898 777764 44 665 4555565544 45555455556778999999 666555
Q ss_pred C-CCcEEEE--eCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 564 D-DSSILVH--CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 564 ~-dg~I~iw--d~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
. +|...+| +..+++... +..+.......+|||||++|+..+.++ .|++||+.+++.. .+ ..+
T Consensus 303 ~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~l---t~~----- 370 (427)
T PRK02889 303 DRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---AL---TDT----- 370 (427)
T ss_pred cCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---Ec---cCC-----
Confidence 4 4554444 555554332 222223344678999999998877654 6999999987522 22 112
Q ss_pred CCeEEEEEcCCCCEEEEE-e-cC--eEEEEECCCCceeeeee---e-eeEEEEEee
Q 005342 638 TIVNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQVL---L-ISHIMFVQI 685 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~-Dg--~I~iwd~~~g~~~~~l~---~-i~~~~fs~~ 685 (701)
.....+.|+|||++|+.+ . .| .+.+.+. +|+..+.+. + +...+|||.
T Consensus 371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 371 TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 223678999999998874 3 33 3666677 566555553 2 778888874
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.9e-11 Score=119.49 Aligned_cols=258 Identities=14% Similarity=0.097 Sum_probs=176.8
Q ss_pred eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
|.+++|.-++ +.+..++.|..+..+.+.+..-......+. ........|..++.. || .|++|-.+|.+.+|....
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~-~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK-TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCcccccccccc-ccccccccccchhhc-CC-EEEEEecCCcEEEEeccC
Confidence 6677776544 456666677777777776433222221111 112245667666654 33 588889999999998754
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-C--CeEEEEeCCCCcEEEEecCC--
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-G--GKISIFSLETFQTLATFANP-- 544 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~-- 544 (701)
+ |..+..+.. +. -...+..+.-+ ...+++|+ . ..+.+||+++.+.+.+-...
T Consensus 135 ~----------------d~hss~l~~--la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 135 G----------------DLHSSKLIK--LA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred C----------------cccccccee--ee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence 4 222222221 11 11233333333 44566777 6 78999999988655543321
Q ss_pred -------CCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 545 -------PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 545 -------~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
+-.++.+.|-+. . .+|+++.-+.+++||.+.+ +++..+.--..+++++...|+|+++++|..-+.+..+
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 224578889888 5 9999999999999999875 5677777778899999999999999999999999999
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeeeee---eeEEEEE
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL---ISHIMFV 683 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs 683 (701)
|.+.+.... . ...+-. +.|+++..+|.++++++ |-|..++|+|+.+-+++...-. ++.+.+.
T Consensus 275 D~r~~kl~g-~----~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 275 DLRGGKLLG-C----GLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred cccCceeec-c----ccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 999975321 1 122444 88999999999999998 4899999999998665543332 6666554
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=2.3e-11 Score=117.27 Aligned_cols=253 Identities=13% Similarity=0.164 Sum_probs=163.5
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 476 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~ 476 (701)
..|||+|+++|+++.- .+.|-|.+ +-+..++-. --+.|.-+.|..|.-+++++.. ++.|.+|++..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~----tlq~~qlf~----cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q---- 80 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSE----TLQLHQLFL----CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ---- 80 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccc----hhhHHHHHH----HHHHhhheeeeccceeeeeeeeccceEEEEEeec----
Confidence 5799999999999885 67777776 333333221 1356888999999988877655 88999997632
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
.+-..+ +. .....+.+++|| |+.++..+ +-.|.+|.+.+.+... ++-.+..+..++
T Consensus 81 -----------------pew~ck-Id-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 81 -----------------PEWYCK-ID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYA 140 (447)
T ss_pred -----------------ceeEEE-ec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEE
Confidence 221111 22 345678899999 76666555 8999999998766543 333455668899
Q ss_pred EcCCC-eEEEEeCC------------------------------------CcEEEEeCCCCceEEeecCCC-CCeEEEEE
Q 005342 553 LLPQD-LFAFGFDD------------------------------------SSILVHCPCTKKTKAKLKGHQ-NRITCLAY 594 (701)
Q Consensus 553 ~spdg-~l~~gs~d------------------------------------g~I~iwd~~~~~~~~~l~~h~-~~V~~v~~ 594 (701)
|+||| +.+..+.- ..+-+||---.-.+. ..|. -++..++|
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~w 218 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEW 218 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEe
Confidence 99999 66655421 123344421111111 1233 36889999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCeeee----------------------------------------------------
Q 005342 595 SLSLNVLVSSGADAQLCVWDAVGWKKLC---------------------------------------------------- 622 (701)
Q Consensus 595 spdg~~l~s~s~D~~I~vwd~~~g~~~~---------------------------------------------------- 622 (701)
+|.+++|+.|+.|+.+||-+--+.+...
T Consensus 219 sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~ 298 (447)
T KOG4497|consen 219 SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQ 298 (447)
T ss_pred ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhh
Confidence 9999999999999999887643322111
Q ss_pred ---eeeeeecc--CCCCCCCCCeEEEEEcCCCCEEEEEe---cCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 623 ---SKFLHSFQ--TGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 623 ---~~~l~~~~--~~~~~~~~~v~~v~~spdg~~l~sg~---Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
...++.+. +....+..++.-++||+|..++++-. -+.+-+||+++.++...+.. |....|.|-
T Consensus 299 ~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~ 372 (447)
T KOG4497|consen 299 QMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG 372 (447)
T ss_pred hhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC
Confidence 00000000 11111234577899999999999954 45799999998887665544 777777554
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=126.94 Aligned_cols=165 Identities=14% Similarity=0.138 Sum_probs=122.6
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEec----CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-------------
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT------------- 575 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~------------- 575 (701)
+--++.|- -|.+.+.|....+..+.+. -.+..++++.|-|.+ .++++..+|.+++||...
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 44456665 6888888865532222121 124689999999988 888889999999997531
Q ss_pred -C--------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 576 -K--------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 576 -~--------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+ .++..+.-..+.|+..+|+|||++||+.|.||.+||+|..+.++.. +....- +..
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg------~mkSYF---GGL 335 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG------VMKSYF---GGL 335 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH------HHHhhc---cce
Confidence 1 1111222234578999999999999999999999999999854332 111222 778
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEEee
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVVKF 689 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~~f 689 (701)
.|++|||||++|++| .|.-|.||.+...+++..-.| |+.++|.|...+-
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTST 389 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccc
Confidence 999999999999996 899999999999999988887 9999999865543
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=9.5e-11 Score=130.64 Aligned_cols=255 Identities=12% Similarity=0.162 Sum_probs=165.8
Q ss_pred ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
.|.++..|..|...+. .++-+++ |.||+|++||...- .++.. ...
T Consensus 1037 ~G~lVAhL~Ehs~~v~--k~a~s~~~~s~FvsgS~DGtVKvW~~~k~----------------~~~~~---------s~r 1089 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVI--KLAVSSEHTSLFVSGSDDGTVKVWNLRKL----------------EGEGG---------SAR 1089 (1431)
T ss_pred cceEeehhhhcccccc--ceeecCCCCceEEEecCCceEEEeeehhh----------------hcCcc---------eee
Confidence 6788999999999998 7777776 89999999998542 22211 111
Q ss_pred c---ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEE-EEecC-CC-EEEEE
Q 005342 388 C---FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRL-IYSHS-GD-FLVAL 459 (701)
Q Consensus 388 ~---l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l-~~spd-g~-~l~s~ 459 (701)
+ +.--.+ +.++..-+.|+.+|.++.||.|++.+++..+... .+.....+.....+.+.++ +|... +. .++.+
T Consensus 1090 S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1090 SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence 1 111223 8899999999999999999999999987421111 1111122222233444443 44432 33 67777
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
...+.+..||..... .+|. .. . ....+.|++++.+ +++++.|+ .|.+.+||++=+.
T Consensus 1170 T~~~~iv~~D~r~~~------------~~w~------lk--~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRH------------DAWR------LK--N-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred EeccceEEecchhhh------------hHHh------hh--c-CccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 778899999763321 0111 11 1 1234789999999 88999999 8999999998777
Q ss_pred EEEEec-CCCCCeEEEEEcCC---C--eEEEEe-CCCcEEEEeCCCCceEEeecCC-------------------CCCeE
Q 005342 537 TLATFA-NPPPIATYFILLPQ---D--LFAFGF-DDSSILVHCPCTKKTKAKLKGH-------------------QNRIT 590 (701)
Q Consensus 537 ~~~~~~-~~~~~i~~l~~spd---g--~l~~gs-~dg~I~iwd~~~~~~~~~l~~h-------------------~~~V~ 590 (701)
++.... ++..+++.+..+|- . .+.+|+ ..+.|.+|++.+|....++... .-...
T Consensus 1229 ~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~ 1308 (1431)
T KOG1240|consen 1229 PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGI 1308 (1431)
T ss_pred eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccce
Confidence 776654 23456766666543 3 455555 6779999999998665554322 01112
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 591 CLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
...+.-.+.++.+|+.|..|+.||....
T Consensus 1309 ~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1309 SCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeecccCCceeeecCCccceeeccCCCc
Confidence 2333334568899999999999998653
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=8.9e-12 Score=127.47 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=149.6
Q ss_pred cCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCc---
Q 005342 401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ--- 475 (701)
Q Consensus 401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~--- 475 (701)
.|+|--+..|-.-|.|.+.|... .+..++ ..........|+|+.|-|.+. .++++-.+|.+.+||..-...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 46677788888888898888752 111110 000012357899999999655 556667799999998632211
Q ss_pred c---ccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe
Q 005342 476 S---LEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 476 ~---~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
+ .-+.-..+.+..|-.... ..+.. + .--.+.|..++|+ |++||+.+ ||.++|+|..+.+.+..++..-+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~-w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVAR-W-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccce-e-EeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence 0 001111122222221111 11111 1 0124578899999 99999999 9999999999888777766667789
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-------------------------------
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL------------------------------- 596 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp------------------------------- 596 (701)
.|++||||| +|++|++|--|.||.+..++++..=.||+++|+.|+|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~ 415 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG 415 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence 999999999 999999999999999999999999999999999999983
Q ss_pred ----CC-------------CEEEEEeCCCeEEEEECCCCe
Q 005342 597 ----SL-------------NVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 597 ----dg-------------~~l~s~s~D~~I~vwd~~~g~ 619 (701)
++ -.+.|.+.|..+++||+....
T Consensus 416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 146678889999999998754
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.4e-11 Score=120.14 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=154.2
Q ss_pred CeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEE-EECC--CcEEEEecCCCCcccccc
Q 005342 405 DSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEEE 480 (701)
Q Consensus 405 ~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s-~s~d--g~i~vwd~~~~~~~~g~~ 480 (701)
..|++|-.+|.+.+|......... ....+. ....+..+.-++...+|++ |+.. ..+.+||++...+
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la-----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q----- 185 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ----- 185 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeee-----cCCceeeeccCCCCCceEecCchhcccceeeeeccccee-----
Confidence 367788888999999987322111 111111 2356677777776666655 7777 8899999866532
Q ss_pred ccceeeEEeeCCC---CeEEeecccCCCCCCeEEEEec-C---CEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCeEEE
Q 005342 481 NVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF 551 (701)
Q Consensus 481 ~~~~~i~~~d~~~---~~~~~~~~~~~~~~~v~~l~~s-~---~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l 551 (701)
+|...+ ..+- + .-.-+++++.|- | ..+++++ -+.+++||.+.+ +++..|.-...+++++
T Consensus 186 -------iw~aKNvpnD~L~---L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 186 -------IWSAKNVPNDRLG---L--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred -------eeeccCCCCcccc---c--eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 232211 1110 0 012345556665 3 5688888 799999999875 4788888778899999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
...|+| +|++|..-|.+..||++.++.... +.|..+.|+++..+|.++++|+||-|..+||+|+++..++....+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-- 331 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-- 331 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh--
Confidence 999999 999999999999999999988776 8889999999999999999999999999999999995433322223
Q ss_pred cCCCCCCCCCeEEEEEcCC
Q 005342 630 QTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spd 648 (701)
...+++-+.++
T Consensus 332 --------s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 --------SRLTFILLRDD 342 (412)
T ss_pred --------ccccEEEecCC
Confidence 55677777665
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.9e-10 Score=117.53 Aligned_cols=305 Identities=12% Similarity=0.107 Sum_probs=188.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN 369 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~ 369 (701)
..++|.+..++..+.+...- .+. ++.|||- .....+.+|+++++.....+
T Consensus 55 ~~v~i~~~~~~~~~lt~~~~--~~~--~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~--------- 121 (566)
T KOG2315|consen 55 QVVKVFEIATLKVVLCVELK--KTY--DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI--------- 121 (566)
T ss_pred CeEEEEEccCCcEEEEeccc--eee--eeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe---------
Confidence 66777777777533332222 455 8889987 22345679999884333221
Q ss_pred CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE
Q 005342 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 449 (701)
Q Consensus 370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~ 449 (701)
.. ...+-|++.|++|..+.|-- ..+.+.+|+..+ .+...-.+ |...|..+.+
T Consensus 122 -q~------------------k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~----f~~~~~kl----~~~~i~~f~l 173 (566)
T KOG2315|consen 122 -QK------------------KMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS----FKTIQHKL----SVSGITMLSL 173 (566)
T ss_pred -eh------------------hhhcCcccccccchhhhhhh-hcceEEEEecCC----ccceeeee----eccceeeEEe
Confidence 11 11113678899986654432 236799999874 11111112 5688999999
Q ss_pred ecCCC--EEEE-----EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EE
Q 005342 450 SHSGD--FLVA-----LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HL 519 (701)
Q Consensus 450 spdg~--~l~s-----~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l 519 (701)
||.+. .+++ .|.-+.+++|....... ...+-.+.+ ....-..+.|+ |. .|
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-----------------~~~~a~ksF---Fkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-----------------HQPVANKSF---FKADKVQMKWNKLGTALL 233 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccc-----------------cchhhhccc---cccceeEEEeccCCceEE
Confidence 99743 3332 23346788886531110 000000001 11122245555 33 22
Q ss_pred EEE--e-C---------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342 520 FSA--S-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKG 584 (701)
Q Consensus 520 ~s~--s-d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~ 584 (701)
+.+ . | .++++++++.....-.+. ..++|.++.|+|+| -++.|..-.++.|||++ +.++..+.
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~- 310 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP- 310 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-
Confidence 222 1 3 368899987444444443 47899999999999 45567778899999975 66766654
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE------
Q 005342 585 HQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------ 655 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg------ 655 (701)
.++-+++-|+|.|++++.+|.+ |.|-|||+.+.++ +.++.. ...+-+.|+|||.+++++
T Consensus 311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-----i~~~~a------~~tt~~eW~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-----IAKFKA------ANTTVFEWSPDGEYFLTATTAPRL 378 (566)
T ss_pred -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-----cccccc------CCceEEEEcCCCcEEEEEeccccE
Confidence 6778999999999999888764 7899999999532 222222 345678999999999974
Q ss_pred -ecCeEEEEECCCCceeeee--ee-eeEEEEEeeEEe
Q 005342 656 -HEGQIDVYEAPTLNHTSQV--LL-ISHIMFVQIVVK 688 (701)
Q Consensus 656 -~Dg~I~iwd~~~g~~~~~l--~~-i~~~~fs~~~~~ 688 (701)
-|+.++||++ +|..+..- +. ...+.|-|+.-.
T Consensus 379 rvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 379 RVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPFNDK 414 (566)
T ss_pred EecCCeEEEEe-cCceeehhhhhHhHhheeeeecCCc
Confidence 2889999999 77765432 22 556677666544
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6.8e-11 Score=113.13 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=87.0
Q ss_pred CCCCeEEEEec--CCEEEEE--e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCC
Q 005342 505 PKDSISCFALR--GSHLFSA--S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCT 575 (701)
Q Consensus 505 ~~~~v~~l~~s--~~~l~s~--s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~ 575 (701)
..++|.+++|+ |+.+++. . ++.|.+||++ ++.+..+. ...+..+.|+|+| ++++|+. .|.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 44579999999 7776544 3 5799999996 66777664 4577899999999 8887764 46799999999
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCC
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVG 617 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~------D~~I~vwd~~~ 617 (701)
.+.+.+.. |. .++.++|+|||+++++++. |+.++||+...
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 98888765 43 4789999999999998764 78999999864
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=5.5e-09 Score=110.18 Aligned_cols=260 Identities=11% Similarity=0.091 Sum_probs=161.2
Q ss_pred eEEEEEcCCCCeEEEEcC----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd 469 (701)
...++++|++++|.++.. ++.|..|++... ++.+..+.-. .........++++|++++++++.. +|.+.+++
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--TGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--TTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--cceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 446889999999998866 578999988731 1444333311 112455678999999999999886 89999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCc--E--EEEe
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQ--T--LATF 541 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~--~--~~~~ 541 (701)
+... |....... ++.. .+. .............++.++ |+++++.. ...|++|++.... . ...+
T Consensus 116 l~~~----g~l~~~~~--~~~~-~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 116 LDDD----GSLGEVVQ--TVRH-EGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp ECTT----SEEEEEEE--EEES-EEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred ccCC----cccceeee--eccc-CCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 8442 11110000 0000 000 000001223457788888 78888877 4789999987654 3 2222
Q ss_pred c-CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CCc--eEEeecC------CCCCeEEEEEecCCCEEEEEe-CC
Q 005342 542 A-NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPC--TKK--TKAKLKG------HQNRITCLAYSLSLNVLVSSG-AD 607 (701)
Q Consensus 542 ~-~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~--~~~--~~~~l~~------h~~~V~~v~~spdg~~l~s~s-~D 607 (701)
. ......+.++|+|++ ++ ++.-.++.|.++++. ++. .++.+.. .......++++|||++|+++. ..
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 2 245667999999999 44 555667789999987 442 2222221 112578899999999876544 57
Q ss_pred CeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCCceeee
Q 005342 608 AQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNHTSQ 673 (701)
Q Consensus 608 ~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g~~~~~ 673 (701)
++|.+|++ .+|....... +..+. ...+.++++|+|++|+++ .++.|.+|++ .+|.+...
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~---~~~~G----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQT---VPTGG----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEE---EEESS----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEEEEecCCCceEEEEE---EeCCC----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 79999999 3454333222 33221 446899999999999985 5788999876 57765443
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.8e-10 Score=120.58 Aligned_cols=232 Identities=15% Similarity=0.078 Sum_probs=140.8
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCE--EE-EEECCCcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF--LV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~--l~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..+.+.|.+ ++....++. ....+.+-.|||||+. ++ +...+|.-.||-. +
T Consensus 165 ~~l~~~d~d----G~~~~~lt~----~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~-------------------~ 217 (428)
T PRK01029 165 GELWSVDYD----GQNLRPLTQ----EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLG-------------------S 217 (428)
T ss_pred ceEEEEcCC----CCCceEccc----CCCCcccceEccCCCceEEEEEEccCCCceEEEE-------------------E
Confidence 356666665 444444332 3445667799999985 32 3333555455522 4
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CC----eEEEEeCCCC---cEEEEecCCCCCeEEEEEcCCC-e
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-L 558 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg----~I~iwd~~~~---~~~~~~~~~~~~i~~l~~spdg-~ 558 (701)
..+++... + ....+.....+|| |+.|+..+ +| .+..||+.++ ...+...+........+|+||| .
T Consensus 218 l~~g~~~~--l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~ 294 (428)
T PRK01029 218 LENPAGKK--I-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR 294 (428)
T ss_pred CCCCCceE--e-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE
Confidence 45554221 1 1123344567888 87877655 23 3444777653 3333333223344678999999 6
Q ss_pred EEEEe-CCCc--EEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccC
Q 005342 559 FAFGF-DDSS--ILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQT 631 (701)
Q Consensus 559 l~~gs-~dg~--I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~ 631 (701)
|+..+ .+|. |+++++.. +.....+..+...+....|||||++|+..+.+ ..|++||+.+++.. .+. .
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~Lt---~ 368 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---QLT---T 368 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---Ecc---C
Confidence 66655 4564 55555542 33344555555667788999999998876553 47999999998532 222 2
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEE-E---ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~s-g---~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
+. ..+....|+|||++|+. + ....|++||+.+++......+ +...+|||.
T Consensus 369 ~~----~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 369 SP----ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CC----CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 21 45677999999998875 3 245699999988876554443 677888864
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=6.7e-10 Score=117.03 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=164.2
Q ss_pred CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLK 420 (701)
Q Consensus 342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~ 420 (701)
.++.+.+.|..+.+.+..+ +.. .. -..+.|+|||++++.++.||.|.++|
T Consensus 14 ~~~~v~viD~~t~~~~~~i----------~~~-------------------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD 64 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARI----------PTG-------------------GAPHAGLKFSPDGRYLYVANRDGTVSVID 64 (369)
T ss_dssp GGTEEEEEETTT-SEEEEE----------E-S-------------------TTEEEEEE-TT-SSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEE----------cCC-------------------CCceeEEEecCCCCEEEEEcCCCeEEEEE
Confidence 4688888899888877763 211 11 23477999999999999999999999
Q ss_pred ccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 421 LQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 421 ~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
+. +.+.. .+.. .....++++|+||+++++++. ++.+.++|. ++.+.+.
T Consensus 65 ~~----~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~---------------------~tle~v~ 114 (369)
T PF02239_consen 65 LA----TGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDA---------------------ETLEPVK 114 (369)
T ss_dssp TT----SSSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEET---------------------TT--EEE
T ss_pred CC----cccEEEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEecc---------------------cccccee
Confidence 98 44433 3322 456788999999999988775 799999965 3433332
Q ss_pred ecccC------CCCCCeEEEEec--CCEEE-EEeC-CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eE-EEEeC
Q 005342 499 NDIAA------DPKDSISCFALR--GSHLF-SASG-GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LF-AFGFD 564 (701)
Q Consensus 499 ~~~~~------~~~~~v~~l~~s--~~~l~-s~sd-g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l-~~gs~ 564 (701)
. +.. .....+..+..+ +..++ +.-| +.|.+.|....+.+ ..+. .........|+|++ ++ ++...
T Consensus 115 ~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 115 T-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp E-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG
T ss_pred e-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccc
Confidence 1 110 133466667666 44344 4444 99999998765433 3333 44566789999999 54 55566
Q ss_pred CCcEEEEeCCCCceEEeecC----CCCCeEEE-------EEec--CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342 565 DSSILVHCPCTKKTKAKLKG----HQNRITCL-------AYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (701)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~----h~~~V~~v-------~~sp--dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~ 631 (701)
+..|-++|..+++.+..+.. |..++..+ .|.. .+...++.-....+.+||..+++.. +.+. .
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv--~~I~---~ 267 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV--KTIP---T 267 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE--EEEE----
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE--EEEE---C
Confidence 77999999999887765532 44444332 1221 2233323333346677888887533 2333 2
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEE-----ecCeEEEEECCCCceeeeeee-----eeEEEEEeeE
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIV 686 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~sg-----~Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~ 686 (701)
.. .+ ..+.-||+++++.+. ..++|.++|.++.+.+.++.. +.++.|+++.
T Consensus 268 ~G----~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 268 QG----GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG 327 (369)
T ss_dssp SS----SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred CC----Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence 21 33 788889999999874 357899999999988888753 8899998763
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=5.4e-10 Score=121.78 Aligned_cols=227 Identities=10% Similarity=0.046 Sum_probs=139.4
Q ss_pred cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342 415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (701)
Q Consensus 415 ~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~ 493 (701)
.+.++|.. ......+. .+...+.+..|||||+.|+..+. ++...+| ++|..+
T Consensus 199 ~l~i~d~d----G~~~~~l~----~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~-------------------~~dl~t 251 (448)
T PRK04792 199 QLMIADYD----GYNEQMLL----RSPEPLMSPAWSPDGRKLAYVSFENRKAEIF-------------------VQDIYT 251 (448)
T ss_pred EEEEEeCC----CCCceEee----cCCCcccCceECCCCCEEEEEEecCCCcEEE-------------------EEECCC
Confidence 56666765 33333322 24567889999999999887765 3443333 225455
Q ss_pred CeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-C
Q 005342 494 KLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D 565 (701)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-d 565 (701)
++... +. .........+|+ |+.|+.. + +| .|+++|+.+++.. .+..+.......+|+||| .++..+. +
T Consensus 252 g~~~~--lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 252 QVREK--VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred CCeEE--ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCC
Confidence 54321 11 112233467888 7777654 3 55 5888899877643 444455556788999999 6665543 3
Q ss_pred C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 566 S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 566 g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+ .|+++|+.+++... +..+.......+|+|||++|+..+.+ + .|.++|+.+++.. .+. .+. ..
T Consensus 328 g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~---~lt---~~~-----~d 395 (448)
T PRK04792 328 GKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ---VLT---STR-----LD 395 (448)
T ss_pred CCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE---Ecc---CCC-----CC
Confidence 3 57888888776543 22122223457899999988776553 3 5677888887422 222 111 12
Q ss_pred EEEEEcCCCCEEEEE--ecC--eEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 641 NHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 641 ~~v~~spdg~~l~sg--~Dg--~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
....|+|||++|+.. .++ .+++++. +|+..+.++. ++..+|||.
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 245799999998863 333 3778887 5666665643 777888863
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=2.2e-10 Score=111.32 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=173.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCC------------CCCEEEEEEecCCC--EEEEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF------------GGRVVRLIYSHSGD--FLVALT 460 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~------------~~~v~~l~~spdg~--~l~s~s 460 (701)
|.++.|..+|.+||+|..+|.|.++.-..... ++. .+.-.+..| ...|..+.|.+++. .++..+
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey-~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY-NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccc-cce-eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 88999999999999999999999998654332 111 111111112 35688899998765 567778
Q ss_pred CCCcEEEEecCCCCc-ccccc---------ccceeeEEeeCCCCeE---EeecccCCCCCCeEEEEec--CCEEEEEeCC
Q 005342 461 QTATHKLWKWQSNKQ-SLEEE---------NVNMESQLYQPSSKLV---MTNDIAADPKDSISCFALR--GSHLFSASGG 525 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~-~~g~~---------~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg 525 (701)
.|.++++|.+..... ..|.. +.+..+.+..+..-.+ ..+.+...|...|.+++++ ++.++++.|=
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 899999999865443 11110 0011111111111110 1112334788899999998 7888898899
Q ss_pred eEEEEeCCCCc-E--EEEecCC-----CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE----E-----------
Q 005342 526 KISIFSLETFQ-T--LATFANP-----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK----A----------- 580 (701)
Q Consensus 526 ~I~iwd~~~~~-~--~~~~~~~-----~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~----~----------- 580 (701)
.|.+|+++--. . +.-++++ ...|++..|+|.. .++-.+..|+|++-|++...+- +
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 99999986332 1 2222323 3457899999998 8888899999999999843210 0
Q ss_pred -eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe-eeeeeeeeeccCCC------CCCCCCeEEEEEcCCCCEE
Q 005342 581 -KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGL------VPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 581 -~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~-~~~~~~l~~~~~~~------~~~~~~v~~v~~spdg~~l 652 (701)
-+.+--..|..+.|+++|+|+++-+. -+|++||+.... +....+++...... ...-..-..++|+-++.++
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v 344 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV 344 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence 11112246889999999999987654 699999996532 22222221100000 0000122568899999999
Q ss_pred EEE-ecCeEEEEECCCCc
Q 005342 653 LSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 653 ~sg-~Dg~I~iwd~~~g~ 669 (701)
++| ..+.+++++...|.
T Consensus 345 ~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 345 MTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ecccccceEEEecCCCCc
Confidence 997 68889999976654
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=8.6e-10 Score=120.14 Aligned_cols=215 Identities=15% Similarity=0.120 Sum_probs=138.8
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEee
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ 490 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~d 490 (701)
..|.++|.. ......+. .+...+.+..|+|||++++.++.+ ..|.+||+
T Consensus 170 ~~l~~~d~~----g~~~~~l~----~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~-------------------- 221 (417)
T TIGR02800 170 YELQVADYD----GANPQTIT----RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDL-------------------- 221 (417)
T ss_pred ceEEEEcCC----CCCCEEee----cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEEC--------------------
Confidence 457777764 33333333 245568889999999999887753 35666644
Q ss_pred CCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe
Q 005342 491 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 563 (701)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs 563 (701)
.++.... + ..+...+.+++|+ |+.|+.. + + ..|++||+.++... .+..+........|+||| .|+..+
T Consensus 222 -~~g~~~~--~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 222 -ATGQREK--V-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred -CCCCEEE--e-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence 5554321 1 1234456678888 7766543 3 3 46999999877543 344344445678999999 776655
Q ss_pred CC-C--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 564 DD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 564 ~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
.. + .|+++|+.+++.. .+..+...+....|+|+|++++.++.++ .|++||+.++.. ..+. ..
T Consensus 297 ~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~----~~---- 364 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLT----DT---- 364 (417)
T ss_pred CCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEcc----CC----
Confidence 43 3 6888998877643 3444555677889999999999888776 899999988642 2222 11
Q ss_pred CCeEEEEEcCCCCEEEEE-e-cC--eEEEEECCCCceeeee
Q 005342 638 TIVNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQV 674 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~-Dg--~I~iwd~~~g~~~~~l 674 (701)
.......|+|||++|+.+ . ++ .+++.+. +|+....+
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 223456899999988874 3 22 4666665 45544444
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.1e-10 Score=128.68 Aligned_cols=190 Identities=12% Similarity=0.092 Sum_probs=142.7
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE--EE---Eec--
Q 005342 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS--CF---ALR-- 515 (701)
Q Consensus 443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~--~l---~~s-- 515 (701)
.+....+.-+.+.++.++.++.+.+||. ..+.+..+ + .+..... +. ..+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~---------------------~~~~~~~~-i--~~~er~~l~~~~~~g~s~~ 144 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDS---------------------KNSSVLSK-I--QSDERCTLYSSLIIGDSAE 144 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEec---------------------ccCceehh-c--CCCceEEEEeEEEEeccCc
Confidence 3444555666778899999999999965 33333322 1 1222111 11 112
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEE
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCL 592 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v 592 (701)
.-++++|+ -+.|.+|+.........+.+|.+.|.++.++-|| ++++.|+|.++++|++.+++... +.-||+.+|+.+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 33677777 7999999987433333578999999999999999 99999999999999999988766 666799999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
+|.|+ .++|++.|.+.++|+.... .+..+. +|.. ..+..++..++...++++ .|+.+++||..+
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~~~~------~l~~y~-~h~g--~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGVNGT------QLEVYD-EHSG--KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eeccc--eeEEeccceEEEEEecccc------eehhhh-hhhh--cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99998 8999999999999976652 233233 4443 789999999998888885 999999999854
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.5e-09 Score=117.35 Aligned_cols=217 Identities=14% Similarity=0.092 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCeEE---EEcCCC--cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEE
Q 005342 395 SRESTSLPDADSAV---CAKSLE--KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW 468 (701)
Q Consensus 395 V~~l~~spdg~~l~---s~s~d~--~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vw 468 (701)
+.+.+|||||+.++ +...++ .|.+.++. +++...+.. ..+.....+|||||+.|+..+. +|...+|
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~----~g~~~~lt~----~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLE----NPAGKKILA----LQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECC----CCCceEeec----CCCCccceEECCCCCEEEEEECCCCCccee
Confidence 45678999998532 444444 46666776 555455442 2344556899999999887664 3432232
Q ss_pred ecCCCCccccccccceeeEEeeCCC---CeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe--EEEEeCCC-CcEE
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK--ISIFSLET-FQTL 538 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~--I~iwd~~~-~~~~ 538 (701)
+..|+..+ +.... +...+.......+|+ |+.|+..+ +|. |+++++.. +...
T Consensus 259 -----------------~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 259 -----------------IQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred -----------------EEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 11123332 22111 111222334567888 78777665 454 55555542 2334
Q ss_pred EEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC---CCeEE
Q 005342 539 ATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLC 611 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~---D~~I~ 611 (701)
..+......+....||||| .|+..+.+ ..|++||+.+++... +......+....|+|||++|+..+. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 4454445567789999999 77665443 379999999887654 3333345678899999998875443 45799
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
+||+.+++.. .+. .+. +.+...+|+|-.
T Consensus 399 ~vdl~~g~~~---~Lt---~~~----g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTR---KIV---IGS----GEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEE---Eee---cCC----CcccCceecCCC
Confidence 9999887532 222 121 456778888754
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.3e-10 Score=115.52 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=143.6
Q ss_pred cCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe------c--------------CCCEEEEEE
Q 005342 401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 460 (701)
Q Consensus 401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s------p--------------dg~~l~s~s 460 (701)
.|-+.++|....||.+++|++. .++.+.-..|...-.+..++..|. | |...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~----~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTA----KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEcc----CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 3556799999999999999998 555443111222233445555553 1 222455555
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
..|.|.+| +...|++..+.....|.+.|.++.++ -..|.+++ |+.+..|+..+...
T Consensus 78 ~~g~v~~y---------------------s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSVLLY---------------------SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccEEEE---------------------EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 56777766 55666655543436899999999988 66788888 99999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC-----CCEEEE-EeCCCeE
Q 005342 538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVS-SGADAQL 610 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd-----g~~l~s-~s~D~~I 610 (701)
+..+.+.+..+.+++++||| .+++++ +.|.+||+++++.+.+|.||.++|+++.|.-+ |.++.+ ...+.-|
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999888899999999999 888876 58999999999999999999999999999876 666554 4456667
Q ss_pred EEEECCC
Q 005342 611 CVWDAVG 617 (701)
Q Consensus 611 ~vwd~~~ 617 (701)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 8887665
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.5e-09 Score=118.53 Aligned_cols=225 Identities=14% Similarity=0.047 Sum_probs=141.0
Q ss_pred cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-C--cEEEEecCCCCccccccccceeeEEeeC
Q 005342 415 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQP 491 (701)
Q Consensus 415 ~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~~~~~~g~~~~~~~i~~~d~ 491 (701)
.+.++|.+ ++....+. .+...+....|||||+.|+..+.+ + .|.+| +.
T Consensus 180 ~l~~~d~~----g~~~~~l~----~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~---------------------~l 230 (430)
T PRK00178 180 TLQRSDYD----GARAVTLL----QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQ---------------------NL 230 (430)
T ss_pred EEEEECCC----CCCceEEe----cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEE---------------------EC
Confidence 46666765 33333332 245678999999999999887653 3 45555 44
Q ss_pred CCCeEEeecccCCCCCCeEEEEec--CCEEEEE-e-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC
Q 005342 492 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 564 (701)
Q Consensus 492 ~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~ 564 (701)
.++.... + ....+.+...+|+ |+.++.. + +| .|++||+.+++.. .+..+........|+||| .++..+.
T Consensus 231 ~~g~~~~--l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 231 DTGRREQ--I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred CCCCEEE--c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence 5554322 1 1223344567888 7777643 3 44 7899999887654 444455556778999999 6665554
Q ss_pred -CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 565 -DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 565 -dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
+| .|+++|+.+++... +...........|+|||++++..+.+ + .|.+||+.+++. ..+. .. .
T Consensus 307 ~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt---~~-----~ 374 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILT---DT-----S 374 (430)
T ss_pred CCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE---EEcc---CC-----C
Confidence 33 68888988876543 22122233457899999998877653 2 588999998752 2222 11 1
Q ss_pred CeEEEEEcCCCCEEEEE-e-c--CeEEEEECCCCceeeeee---e-eeEEEEEee
Q 005342 639 IVNHIQFHPDQIHLLSI-H-E--GQIDVYEAPTLNHTSQVL---L-ISHIMFVQI 685 (701)
Q Consensus 639 ~v~~v~~spdg~~l~sg-~-D--g~I~iwd~~~g~~~~~l~---~-i~~~~fs~~ 685 (701)
......|+|||++++.+ . + ..+.++++. |...+.++ + +...+|||.
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 12356899999999864 2 3 347788874 44443443 2 677777763
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.5e-09 Score=118.55 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~ 470 (701)
+...+|+|||+.|+..+.+ ..|.+|++. +++...+.. ..+.+....|+|||+.|+.. +.+|...+|
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~----~g~~~~l~~----~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy-- 270 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD----TGRREQITN----FEGLNGAPAWSPDGSKLAFVLSKDGNPEIY-- 270 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECC----CCCEEEccC----CCCCcCCeEECCCCCEEEEEEccCCCceEE--
Confidence 7889999999999876543 368888987 565544331 23345578999999988754 445543333
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANP 544 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~ 544 (701)
++|..++.... + ..+........|+ |+.++..+ + ..|+++|+.+++..+. ...
T Consensus 271 -----------------~~d~~~~~~~~--l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~ 329 (430)
T PRK00178 271 -----------------VMDLASRQLSR--V-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV 329 (430)
T ss_pred -----------------EEECCCCCeEE--c-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC
Confidence 22545554332 2 1233445567788 77776655 3 3688889887764332 212
Q ss_pred CCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCC
Q 005342 545 PPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVG 617 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~ 617 (701)
........|+||| .++..+. ++ .|++||+.+++... +.. ........|+|||++++..+.+ ..++++++..
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 2334567899999 6666554 33 58899998876533 332 2223356899999988876643 3578888865
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
+.. .. +. .+. +.+...+|+|-
T Consensus 408 ~~~---~~---l~-~~~---g~~~~p~ws~~ 428 (430)
T PRK00178 408 RVR---LP---LP-TAQ---GEVREPSWSPY 428 (430)
T ss_pred Cce---EE---Cc-CCC---CCcCCCccCCC
Confidence 421 12 22 111 45677778873
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=1.7e-09 Score=117.90 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=125.5
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCc--
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTAT-- 464 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~-- 464 (701)
+.. +.+.+|+|||++|+.++.+ ..|.+|++. +++...+.. +...+.+++|+|||+.|+.. +.++.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~----~g~~~~~~~----~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA----TGQREKVAS----FPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC----CCCEEEeec----CCCCccceEECCCCCEEEEEECCCCCcc
Confidence 344 7788999999999987643 479999997 554444331 34556678999999987754 44444
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTL 538 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~ 538 (701)
|.+|| ..++.... + ..+........|+ |+.|+..+ + ..|+++|+.+++..
T Consensus 260 i~~~d---------------------~~~~~~~~--l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 260 IYVMD---------------------LDGKQLTR--L-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred EEEEE---------------------CCCCCEEE--C-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 55554 44444322 2 1233334456777 77777665 2 36888898776643
Q ss_pred EEecCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---eEE
Q 005342 539 ATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLC 611 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~ 611 (701)
.+..+......+.|+|+| +++.++.++ .|++||+.++.. ..+... .......|+|||++|+.++.++ .++
T Consensus 316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 344345566788999999 888777765 899999987654 333322 2345568999999888776654 456
Q ss_pred EEECCC
Q 005342 612 VWDAVG 617 (701)
Q Consensus 612 vwd~~~ 617 (701)
+.+...
T Consensus 393 ~~~~~g 398 (417)
T TIGR02800 393 LVSTDG 398 (417)
T ss_pred EEECCC
Confidence 666544
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1e-09 Score=113.47 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|...-.+-|-..++.-..|.+|.+..- .|....+.+| ..-..++++.-.--|+.++....|+-.
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak-----~G~hy~~RIP-----~~GRDm~y~~~scDly~~gsg~evYRl------ 160 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAK-----YGRHYRTRIP-----KFGRDMKYHKPSCDLYLVGSGSEVYRL------ 160 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhh-----cCeeeeeecC-----cCCccccccCCCccEEEeecCcceEEE------
Confidence 444445556555555566677766544 3444444442 223445555333334444544455555
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec------CCC
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA------NPP 545 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~------~~~ 545 (701)
+++.|..+.. + ....+.++++.++ ..+|++|+ +|.|-.||.++...+.++. .|.
T Consensus 161 ---------------NLEqGrfL~P-~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 161 ---------------NLEQGRFLNP-F-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred ---------------Eccccccccc-c-ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 4466665532 2 2334788999998 77888888 9999999998876655543 222
Q ss_pred -----CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECC
Q 005342 546 -----PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 546 -----~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~ 616 (701)
..|+++.|+.+| .+++|+.+|.++|||+++.+++..-. +..-+|..+.|.+. ++.++|. +...++|||-.
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence 248999999999 99999999999999999988765433 23348999999874 4455544 45688999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
+|+.... +. .+ ..++.+++-|++-+++++ .++.+..|=+..
T Consensus 303 ~Gk~~as--iE-----pt---~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 303 TGKPMAS--IE-----PT---SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCceee--cc-----cc---CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 9864321 11 11 668999999999888887 555566555544
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=4e-08 Score=103.65 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=154.1
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC----CCcEEEEecCCCCccccccccceeeEEe
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLY 489 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~----dg~i~vwd~~~~~~~~g~~~~~~~i~~~ 489 (701)
+.|..|+++. ..+....+.. .........++++|++++|.++.. +|.|..|.+
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i------------------- 69 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI------------------- 69 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-------------------
T ss_pred CcEEEEEEcC--CCCCceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE-------------------
Confidence 7888888842 1444333221 012456677899999999999877 468888876
Q ss_pred eCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcEEEE---ec----------CCCCCeEE
Q 005342 490 QPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA----------NPPPIATY 550 (701)
Q Consensus 490 d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~~~~---~~----------~~~~~i~~ 550 (701)
+.+++.+.. .... ........++++ +++++++. +|.|.++++.. +..... +. .......+
T Consensus 70 ~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 70 DPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp ETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred CCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 545455321 1111 123345578887 88888887 79999999976 433222 21 12345689
Q ss_pred EEEcCCC-eEEEE-eCCCcEEEEeCCCCc--eE--EeecC-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEECC--CCee
Q 005342 551 FILLPQD-LFAFG-FDDSSILVHCPCTKK--TK--AKLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAV--GWKK 620 (701)
Q Consensus 551 l~~spdg-~l~~g-s~dg~I~iwd~~~~~--~~--~~l~~-h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~--~g~~ 620 (701)
+.++|+| ++++. .....|++|++.... +. ..+.. .......++|+|++++++.. -.+++|.++++. .|..
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 9999999 55554 344589999987654 32 22222 33467899999999977655 457889999998 6654
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC--CCce--eeeeee----eeEEEEEee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQVLL----ISHIMFVQI 685 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~--~g~~--~~~l~~----i~~~~fs~~ 685 (701)
.....+..++.+.. .......+.++|||++|+++ .+++|.+|++. +|++ +..++. ..+++++|+
T Consensus 229 ~~~~~~~~~~~~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 229 TEIQTISTLPEGFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp EEEEEEESCETTSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred eEEEEeeecccccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 44444443433222 11367899999999999986 57889999993 3443 333332 667777765
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.9e-09 Score=116.12 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~ 470 (701)
+.+..|+|||+.|+..+.+ ..|.+||+. +++...+.. ..+.....+|+|||+.|+.. +.+|...+|-
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~----tg~~~~lt~----~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~- 290 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIY----TQVREKVTS----FPGINGAPRFSPDGKKLALVLSKDGQPEIYV- 290 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECC----CCCeEEecC----CCCCcCCeeECCCCCEEEEEEeCCCCeEEEE-
Confidence 6778999999999876543 257788886 555444331 12334468999999988754 5567655552
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANP 544 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~ 544 (701)
+|..+++... + ..+.......+|+ |+.++..+ + ..|+++|+.+++.... ...
T Consensus 291 ------------------~dl~tg~~~~--l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~ 348 (448)
T PRK04792 291 ------------------VDIATKALTR--I-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE 348 (448)
T ss_pred ------------------EECCCCCeEE--C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC
Confidence 2556655432 2 1233455677888 77776655 3 3677888877765432 212
Q ss_pred CCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCC
Q 005342 545 PPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVG 617 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~ 617 (701)
.......+|+||| +++..+. ++ .|.++|+.+++... +... .......|+|||++|+..+.+ + .+++++...
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 2233457899999 6655444 44 56778888876533 3322 122345899999988765543 3 478888754
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
+. ... +..+ . +.+...+|+|
T Consensus 427 ~~---~~~---l~~~-~---g~~~~p~Wsp 446 (448)
T PRK04792 427 RF---KAR---LPAG-Q---GEVKSPAWSP 446 (448)
T ss_pred Cc---eEE---CcCC-C---CCcCCCccCC
Confidence 32 122 2212 1 5567788887
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=2.9e-08 Score=102.33 Aligned_cols=265 Identities=14% Similarity=0.090 Sum_probs=157.7
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC----------
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS---------- 412 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~---------- 412 (701)
.++|.+-|..+++.+..+ +.- ...| .+ +||||+.++.+..
T Consensus 26 ~~~v~ViD~~~~~v~g~i----------~~G---------------~~P~----~~-~spDg~~lyva~~~~~R~~~G~~ 75 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMT----------DGG---------------FLPN----PV-VASDGSFFAHASTVYSRIARGKR 75 (352)
T ss_pred CceEEEEECCCCEEEEEE----------Ecc---------------CCCc----ee-ECCCCCEEEEEeccccccccCCC
Confidence 388999999988877663 110 0111 23 9999998887765
Q ss_pred CCcEEEEeccccCCCCce-eEeecCCCCC---CCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceee
Q 005342 413 LEKSVNLKLQLINEPSEC-RTLLLPDNSF---GGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMES 486 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~-~~l~~~~~~~---~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i 486 (701)
+..|.+||..+ .+. ..+.++...+ ......++++|||+++++... ++.+.+.|+
T Consensus 76 ~d~V~v~D~~t----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~---------------- 135 (352)
T TIGR02658 76 TDYVEVIDPQT----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL---------------- 135 (352)
T ss_pred CCEEEEEECcc----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC----------------
Confidence 78999999984 332 2333322111 233457889999999887763 688888865
Q ss_pred EEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCC-CcE-EE---EecCCCCCe-EEEEEcC-CC-
Q 005342 487 QLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQT-LA---TFANPPPIA-TYFILLP-QD- 557 (701)
Q Consensus 487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~-~~~-~~---~~~~~~~~i-~~l~~sp-dg- 557 (701)
.+++++.. +.. .+...-+..+ ...++-+.||......+.+ |+. .. .+.+...++ ..-.+.+ +|
T Consensus 136 -----~~~kvv~e-i~v--p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 136 -----EGKAFVRM-MDV--PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred -----CCCcEEEE-EeC--CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 44444322 111 1111122222 3333333354443333221 221 11 111111111 0114455 77
Q ss_pred eEEEEeCCCcEEEEeCCC-----CceEEeecC-------CCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEC
Q 005342 558 LFAFGFDDSSILVHCPCT-----KKTKAKLKG-------HQNRITCLAYSLSLNVLVSSG----------ADAQLCVWDA 615 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~-----~~~~~~l~~-------h~~~V~~v~~spdg~~l~s~s----------~D~~I~vwd~ 615 (701)
.+.+..+ |+|++.|+.. .+....+.. ..+.+.-++++|+++.+.... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6666666 9999999643 333333221 233455699999998777642 2258999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeeeee
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.+++.+. .+..+ ..+.+++++||++ +|++. .++.|.++|..+++.++++..
T Consensus 287 ~t~kvi~-----~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 287 KTGKRLR-----KIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CCCeEEE-----EEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 9975433 23334 5689999999999 77763 688899999999999998843
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=7.4e-10 Score=107.90 Aligned_cols=220 Identities=15% Similarity=0.236 Sum_probs=150.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
++||.+ |+....-|...-+++.+.|.++++|--.+ .++.+. ++ ....+.+++++.+.++...|++|-.+|++.-
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wp-sI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD---SGQYWP-SI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEecc---ccccCc-hh-hhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 567888 88888889889999999999999997553 444433 10 1124678999999999999999999999988
Q ss_pred EecCCCCc------cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEE--ec---CCEEEE---------------
Q 005342 468 WKWQSNKQ------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA--LR---GSHLFS--------------- 521 (701)
Q Consensus 468 wd~~~~~~------~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~--~s---~~~l~s--------------- 521 (701)
+.+...-. ..-.....+...+++.....++.. ++...+.-.+ +. |.++..
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~----~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLST----GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEe----ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 86533211 011112222344455444444332 2222111111 11 333322
Q ss_pred Ee-CCeEEEEeC--CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCeEEEEEec
Q 005342 522 AS-GGKISIFSL--ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 522 ~s-dg~I~iwd~--~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~v~~sp 596 (701)
|. .|.|....+ ..-..+.++.+|...+++++|.|.. .+.+|..|..+.+||+..++ ....+.+|...|..+..-+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 22 233333322 2334677888999999999999999 99999999999999987543 4567788999999998888
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 005342 597 SLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 597 dg~~l~s~s~D~~I~vwd~~~ 617 (701)
.-+.+.+++.||.|-+||++.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 888999999999999999864
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.3e-07 Score=93.69 Aligned_cols=257 Identities=12% Similarity=0.092 Sum_probs=158.8
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~ 470 (701)
++-++|+|+++.|.++..+ |.|.-|.++. ..|....+.. ......+-..++.+++|++++++.. .|.|.++.+
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~--~~G~Lt~ln~-~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP--DDGRLTFLNR-QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcC--CCCeEEEeec-cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence 7789999999999988654 7787777762 1244444331 1112334488999999999999887 589999977
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEec---C
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA---N 543 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~---~ 543 (701)
+.. |.....+.. +.+...+ ... ......+.+..+. ++++++.+ -..|.+|++..|+....-. .
T Consensus 119 ~~d----G~l~~~v~~-~~h~g~~-p~~----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 119 QAD----GSLQPVVQV-VKHTGSG-PHE----RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred ccC----Cccccceee-eecCCCC-CCc----cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 442 111110000 0000000 000 0011125666777 88888887 3789999998776432211 2
Q ss_pred CCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCC-ceEEeecC---------CCCCeEEEEEecCCCEEEEEeC-CCeE
Q 005342 544 PPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTK-KTKAKLKG---------HQNRITCLAYSLSLNVLVSSGA-DAQL 610 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~~-~~~~~l~~---------h~~~V~~v~~spdg~~l~s~s~-D~~I 610 (701)
.....+.|+|+|++ +. +++=-+++|-+|..... ..+..++. ...+..++..+|||++|.++.. ...|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 45567999999999 44 44456889999988763 22222221 2346778899999999986643 3478
Q ss_pred EEEECCC--CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCCcee
Q 005342 611 CVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNHT 671 (701)
Q Consensus 611 ~vwd~~~--g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g~~~ 671 (701)
-+|.+.. |++. .+...+.+. ..-+...|+|+|++|++. .+.+|.+|.+ .+|++-
T Consensus 269 ~~f~V~~~~g~L~---~~~~~~teg----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 269 AVFSVDPDGGKLE---LVGITPTEG----QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEEEcCCCCEEE---EEEEeccCC----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 8887764 3321 122111121 335889999999999985 5566888877 456543
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=5.4e-08 Score=96.46 Aligned_cols=229 Identities=11% Similarity=0.064 Sum_probs=154.5
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEEEecCCCCccccccccceeeEEe
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 489 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~~~g~~~~~~~i~~~ 489 (701)
++.|.+|++.+. .++...+. .....+.++-++|+|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~--~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQ--LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCc--ccccchhh--hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 467999999732 22222211 12356788999999999999888764 67777755
Q ss_pred eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcE---EEEecCCCCC----------eEEE
Q 005342 490 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQT---LATFANPPPI----------ATYF 551 (701)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~---~~~~~~~~~~----------i~~l 551 (701)
|..+|.+....-......+...++++ |++++++. .|.|.++-++. |.. +..+. |... +.+.
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSA 150 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCcccee
Confidence 76767643210111223344778888 88999998 59999999965 432 22222 3333 7888
Q ss_pred EEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeec---CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC--Ceeeee
Q 005342 552 ILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCS 623 (701)
Q Consensus 552 ~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~--g~~~~~ 623 (701)
.+.|++ ++++..- --.|.+|++..|++...-. .-....+.++|+|++++....++ +++|-+|.... |+....
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999999 6665543 3389999999876533211 12345688999999998876655 89999999887 555555
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
..+..++..-. .....-.|..+|||++|.++ ....|.++.+.
T Consensus 231 Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 231 QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 55555554432 22567789999999999997 34578888874
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=1.2e-08 Score=104.55 Aligned_cols=302 Identities=10% Similarity=0.005 Sum_probs=192.8
Q ss_pred ccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342 311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN 384 (701)
Q Consensus 311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~ 384 (701)
+|+..+......+..-.-.+. .++|||. ..-..|.+|....+..+..+
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~--~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~------------------------ 69 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVA--YVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF------------------------ 69 (561)
T ss_pred eecCccccccccccccCcchh--heeecCcchheehhhccceEEccccchhheeee------------------------
Confidence 566555555555554444567 8899998 55677888877666544331
Q ss_pred CCccccCCCceEEEEEcCCCCeEEEEcCCC---------------cEEEEeccccCCCCceeEeecCCCCCCCC--EE-E
Q 005342 385 DSSCFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGR--VV-R 446 (701)
Q Consensus 385 ~~~~l~~h~~V~~l~~spdg~~l~s~s~d~---------------~v~iw~~~~~~~~~~~~~l~~~~~~~~~~--v~-~ 446 (701)
.|..|..+.|||+++||.+-+..+ .+.+||.. ++.+.. .+.....+ .+ -
T Consensus 70 ------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~----sg~iv~---sf~~~~q~~~~Wp~ 136 (561)
T COG5354 70 ------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA----SGMIVF---SFNGISQPYLGWPV 136 (561)
T ss_pred ------ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc----CceeEe---eccccCCcccccce
Confidence 566688999999999999865433 48899997 665543 22222222 44 6
Q ss_pred EEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEE
Q 005342 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA 522 (701)
Q Consensus 447 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~ 522 (701)
+.|+-|.++.+-. ....+.|+++ +. .+....+..-....|....++ +..|+.-
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~-t~---------------------n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEI-TD---------------------NIEEHPFKNLRPVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEec-CC---------------------ccccCchhhccccceeeEEecCCCCCceEEEE
Confidence 7889888876544 3356888865 21 111100111112456777777 2233432
Q ss_pred -----e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE----e-------CCCcEEEEeCCCCceEEeecC
Q 005342 523 -----S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKG 584 (701)
Q Consensus 523 -----s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g----s-------~dg~I~iwd~~~~~~~~~l~~ 584 (701)
+ .+.+++|.+..+..+.+..-....-..+.|.+.| ++++- . ....++|+++.... +....+
T Consensus 194 tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~ 272 (561)
T COG5354 194 TPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD 272 (561)
T ss_pred ccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc
Confidence 2 5789999998776665443233334678899998 43321 1 12468889887443 333335
Q ss_pred CCCCeEEEEEecCCCEEEEE--eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E---ecC
Q 005342 585 HQNRITCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEG 658 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~--s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g---~Dg 658 (701)
-.++|...+|+|+++.++++ -.+..+.++|++..- ... ++. ..-+.+.|||.+++++. | ..|
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~-~Pe------~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFY-FPE------QKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccce-----EEe-cCC------cccccccccCcccEEEEecCCcccc
Confidence 67899999999988866654 478899999999841 111 221 44578899999999887 5 367
Q ss_pred eEEEEECCCCce-eeeeee--eeEEEEEeeEE
Q 005342 659 QIDVYEAPTLNH-TSQVLL--ISHIMFVQIVV 687 (701)
Q Consensus 659 ~I~iwd~~~g~~-~~~l~~--i~~~~fs~~~~ 687 (701)
.+-+||...... +..+.+ .+.+.|||+.-
T Consensus 341 ni~i~~~~~rf~~~~~~~~~n~s~~~wspd~q 372 (561)
T COG5354 341 NIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQ 372 (561)
T ss_pred ceEEeccCCceEEEEEeecCCceEeeccCCce
Confidence 899999965443 436666 66667887754
No 257
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=8e-09 Score=110.35 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=95.3
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE---------EeCCCeEEEEECCCCeeeeeeeeee
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS---------SGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s---------~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
++|.|+..|+|.++|+.++..-..+..|.+.|.++.|.....++-. |+.-+.+.|-|+++|. .+.++.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl---sk~fR~ 515 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL---SKRFRG 515 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccc---cccccc
Confidence 6889999999999999999999999999999999999766554422 2234568899999985 334442
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEE
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFV 683 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs 683 (701)
++.. .+.+|+.+..|..|+|++.- .|.-+.+||+++..+++.... |+.+.|+
T Consensus 516 l~~~---despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 516 LQKP---DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred CCCC---CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 2222 23899999999999999996 899999999988887665544 8999998
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=2.6e-08 Score=100.91 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=121.9
Q ss_pred CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342 516 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA 593 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~ 593 (701)
|++++..+-|...+.+...+-.++. ++...|.-..+..++ -++.|..|| .+-|+|.++++. +.+.+.-+.|.++.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~ 408 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK 408 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence 8888888888888877655554443 467778888888888 899999999 899999888765 44555668899999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-e----cCeEEEEECCCC
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTL 668 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~----Dg~I~iwd~~~g 668 (701)
.+|+|++++.+.+...|-+.|+.+|... .+. ...- +-|+.+.|||+++++|-+ - ...|+++|+.++
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~---~id---kS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVR---LID---KSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCee---Eec---cccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 9999999999999999999999998632 222 2222 779999999999999975 2 456999999988
Q ss_pred ceeeeeee---eeEEEEEee
Q 005342 669 NHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 669 ~~~~~l~~---i~~~~fs~~ 685 (701)
+....-.. -.+.+|.|+
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred eEEEecCCcccccCcccCCC
Confidence 87654443 344445444
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=9.6e-09 Score=108.62 Aligned_cols=259 Identities=8% Similarity=0.035 Sum_probs=173.5
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE------e--ecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT------L--LLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~------l--~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
...+++|+.+..++|+|+.||.+++-.+.+.....+... + .-+..+|...|.-+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 377999999999999999999999998875433222211 1 12345899999999999999888888889999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.||-+ -.|.-....+....++.|.+++|+ |..++... ||.|.+=.+...+ +.--.
T Consensus 96 iVWml---------------------ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKe 153 (1189)
T KOG2041|consen 96 IVWML---------------------YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKE 153 (1189)
T ss_pred EEEee---------------------ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchh
Confidence 99954 222211000112345678889998 88888877 8887776664332 22111
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-------e-EE---eecCCCCCeEEEEEe--------cCCCEEE
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------T-KA---KLKGHQNRITCLAYS--------LSLNVLV 602 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~-------~-~~---~l~~h~~~V~~v~~s--------pdg~~l~ 602 (701)
-.......+.|++|. .++.+-.+|.+++||....- + +. .+......|-.+.|. ||...||
T Consensus 154 Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 154 LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 112234578999999 88888999999999965321 1 10 011111124455553 4778999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-Eec---------CeEEEEECCCCceee
Q 005342 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHTS 672 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~D---------g~I~iwd~~~g~~~~ 672 (701)
.+-..|.+.|-.-.+.. .+.- +..| -.+..+.|+|+|..||+ |.| +.|.+|.. -|+.+.
T Consensus 234 vcy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g 302 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG 302 (1189)
T ss_pred EEEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheE
Confidence 99999999887655531 2222 3333 56889999999999997 421 24666765 677777
Q ss_pred eeee----eeEEEEEee
Q 005342 673 QVLL----ISHIMFVQI 685 (701)
Q Consensus 673 ~l~~----i~~~~fs~~ 685 (701)
++.. |++++|-..
T Consensus 303 tlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 303 TLKVPGSCITGLSWEGT 319 (1189)
T ss_pred EEecCCceeeeeEEcCC
Confidence 7765 999998543
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=9.3e-09 Score=98.39 Aligned_cols=251 Identities=10% Similarity=-0.053 Sum_probs=161.3
Q ss_pred CCceEEEEEc---CCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 392 NNQSRESTSL---PDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 392 h~~V~~l~~s---pdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
|..+..+.|. .+|. .++-+..+|.|.++.............++. .........++.|++.|..++++..+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS-KKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch-hhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 3335555564 2444 566677789999998763222221111110 0001123567889999999999999999885
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC-CCcEEEE-e
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE-TFQTLAT-F 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~-~~~~~~~-~ 541 (701)
-+.... ..++.+. + +.|..+++...|+ .+.+.+|+ |+.+..||++ .++.+.. .
T Consensus 148 v~~t~~----------------~le~vq~----w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 148 VYETEM----------------VLEKVQT----W-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred Eeccee----------------eeeeccc----c-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 432110 1122221 2 4788889999998 77889999 8999999998 3444433 4
Q ss_pred cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECC
Q 005342 542 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~ 616 (701)
+.|...|.+|.-+|.. +|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|. +..|+++- -+-.+|-+..
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~ 284 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSS 284 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHH-hcCceEEEec
Confidence 5688899999988765 999999999999999984 66665433 4478999999994 33444443 3446777776
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEE-EEECCCCce
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQID-VYEAPTLNH 670 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~-iwd~~~g~~ 670 (701)
.+.......+. ....|. +-+..-.|.....++|++ .|+.++ +|-..++..
T Consensus 285 ~~~~e~~~~~~-s~~~hd---Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 285 DKVLEFQIVLP-SDKIHD---SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccchheeee-cccccc---ceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 64322111222 223333 667777775555678883 788855 887766653
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=1.1e-09 Score=120.98 Aligned_cols=188 Identities=15% Similarity=0.138 Sum_probs=145.9
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCC-----EEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-----VVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~-----v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
...+.-+...++.+..+..+.+||... +.... .. .+... ..-+.++++.-++++|+.-+.+.+|++.
T Consensus 92 g~~l~~e~k~i~l~~~~ns~~i~d~~~----~~~~~-~i---~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 92 GAKLFEENKKIALVTSRNSLLIRDSKN----SSVLS-KI---QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred ccchhhhcceEEEEEcCceEEEEeccc----Cceeh-hc---CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 334555667888888889999999872 22111 11 12222 2223456677789999999999999763
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-EecCCCCC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPI 547 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-~~~~~~~~ 547 (701)
. ++.... + .+|.+.|.++.++ |.++++.+ |.++++|++++.+... +.-+|...
T Consensus 164 ~--------------------dn~p~~--l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 164 E--------------------DNKPIR--L-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred c--------------------cCCcce--e-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 1 111111 2 5899999999998 99999999 8999999999988766 55679999
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+..++++|+ .++++++|.+.++|+. .++.+.++.+|.+ .+..++..++...++|++.|+.+++||+..
T Consensus 221 vw~~~~~~n-~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 221 VWACCFLPN-RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEeccc-eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999 8999999999999975 4566668888875 799999999999999999999999999875
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=8.3e-09 Score=98.71 Aligned_cols=225 Identities=16% Similarity=0.094 Sum_probs=142.2
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec---CCC-EEEEEECCCcEEEEecCCCCccccccccceeeEE
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 488 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp---dg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~ 488 (701)
.|.+.++++.+.+... ...+. ......+..+.|.. +|. .++-+..+|.|.++....... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q---~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQ---CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVH 110 (339)
T ss_pred ccceEEEeecccccCc-cceee---eecccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eee
Confidence 4678888887544333 11111 11245567777763 444 455666688898885422110 000
Q ss_pred eeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC--eEEE
Q 005342 489 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAF 561 (701)
Q Consensus 489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg--~l~~ 561 (701)
..+-+..-+ ......++.|+ +.-++++. +|.+.+-+...... ++..++|.-++....|+... .+.+
T Consensus 111 L~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 111 LRGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ecccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 011110000 01123355666 66677766 79888766655443 34788899999999998877 9999
Q ss_pred EeCCCcEEEEeCCC-CceEEe-ecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCC
Q 005342 562 GFDDSSILVHCPCT-KKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 562 gs~dg~I~iwd~~~-~~~~~~-l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~ 637 (701)
|++|+.+..||++. ++.+.. -+-|...|.++.-+| .+.++++|+.|-.|++||.++ ++++....+.
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---------- 253 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---------- 253 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc----------
Confidence 99999999999993 333332 345888999998887 678999999999999999995 4333222222
Q ss_pred CCeEEEEEcCCC--CEEEEEecCeEEEEECCCC
Q 005342 638 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTL 668 (701)
Q Consensus 638 ~~v~~v~~spdg--~~l~sg~Dg~I~iwd~~~g 668 (701)
++|+.+.++|.- +.++++--+..+|-+.+.+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 889999999963 4455553334566666543
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=111.88 Aligned_cols=197 Identities=14% Similarity=0.075 Sum_probs=145.6
Q ss_pred cCCCEEEEEECCCcEEEEecCCCCc-----cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----C-CEE
Q 005342 451 HSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-SHL 519 (701)
Q Consensus 451 pdg~~l~s~s~dg~i~vwd~~~~~~-----~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~-~~l 519 (701)
|.+.+++....||.+++|+...+.. +..+.........|...-+. ......+..+- + ..+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~---------s~~k~~~~~~~~~~s~~t~~l 73 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY---------SPMKWLSLEKAKKASLDTSML 73 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc---------chHHHHhHHHHhhccCCceEE
Confidence 4567889999999999998866654 22222222223333311110 00111111111 2 245
Q ss_pred EEEe-CCeEEEEeCCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342 520 FSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (701)
Q Consensus 520 ~s~s-dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s 595 (701)
+-|. .|.|.+|+...|+....+. .|.+.|.++.++.+. .|.+++.|+.+..|+..+...++.+.+....+.+++.+
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence 5666 7999999999999888776 578899999998888 99999999999999999999999999988899999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-----CCEEEEE--ecCeEEEEECCC
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg--~Dg~I~iwd~~~ 667 (701)
|||..++++|. +|++||+++++.+ . ...||. ++|++++|..+ |.+++++ .+..+.+|-+..
T Consensus 154 ~D~~~l~~as~--~ik~~~~~~kevv-----~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGKILLTASR--QIKVLDIETKEVV-----I-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCCEEEeccc--eEEEEEccCceEE-----E-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999998884 8999999997533 3 223776 99999999887 8888885 566788887754
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=4.5e-10 Score=129.32 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=146.0
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
++.|-. |.++.=||...+-+||+.||.|++|... .++ +.. ........|+.+.|+.+|+.+..+..||.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~----~~~~v~~---~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWG----HGQQVVC---FRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEecc----CCCeEEE---eeccCcchhhhhhhcccCCceeeeccCCcee
Confidence 334444 8999999999999999999999999986 332 222 1122348899999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe----CCeEEEEeCCC--Cc-EEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLET--FQ-TLA 539 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s----dg~I~iwd~~~--~~-~~~ 539 (701)
+|... ..-.+. . +.|.....++.|-+..+++++ ++.+.+||..- +. .++
T Consensus 2277 l~q~~---------------------pk~~~s--~-qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2277 LWQAS---------------------PKPYTS--W-QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred ecccC---------------------Ccceec--c-ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee
Confidence 99542 111221 1 357777778888777777764 48999999643 22 344
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
..|.+.++++++-|.. .+++|+.+|.|++||++..+++++++. +. ...++++|+..|.|+||++..-
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 6799999999999999 999999999999999999988887764 44 5678999999999999999874
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=9.3e-09 Score=100.38 Aligned_cols=222 Identities=9% Similarity=0.066 Sum_probs=144.5
Q ss_pred eeEEEeecCcceeeeEEEEccC-------CCCCeEEEEecc-CCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 319 LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFP-TVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 319 ~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+++.++||.+.++ ...--|. +.|.+++||--. .++-... -+..
T Consensus 16 ll~~~eG~~d~vn--~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps---------------------------I~~~ 66 (404)
T KOG1409|consen 16 LLSKIEGSQDDVN--AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS---------------------------IYHY 66 (404)
T ss_pred hhhhhcCchhhhh--hheeccCCCCeEEccccceeeeEEeccccccCch---------------------------hhhh
Confidence 4455677777776 4444443 889999999422 1211111 0111
Q ss_pred CCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 391 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 391 ~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
....++++.++++.+.|+.|-.+|++.-+.+.+.-..-...+ ....|..++..+.|+-....+++.+.|..+.---.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r---~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK---DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh---hhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence 222288999999999999999999999888753111111111 12358899999999999999999998877653222
Q ss_pred CCCCc--------------------cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342 471 QSNKQ--------------------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 527 (701)
Q Consensus 471 ~~~~~--------------------~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I 527 (701)
+.+.. ..|.....+...-..+..-.++.+ + .+|.+.+.+++|. ...+.+|. |..+
T Consensus 144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~-~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT-F-NGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE-E-cCcccceEEEEEcCCCcEEEeccccCce
Confidence 22222 111111111111112222223322 2 4899999999999 66788888 9999
Q ss_pred EEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 005342 528 SIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 574 (701)
Q Consensus 528 ~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~ 574 (701)
.+||+..++ ......+|...|..+..-+.- .+.+++.||.|.+||++
T Consensus 222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999996554 345667888888888877777 89999999999999975
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=5.1e-08 Score=98.90 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=153.1
Q ss_pred ccCCCc---eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee--cCCCCCCC-C--EE---EEE-Eec-CCCE
Q 005342 389 FNDNNQ---SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL--LPDNSFGG-R--VV---RLI-YSH-SGDF 455 (701)
Q Consensus 389 l~~h~~---V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~--~~~~~~~~-~--v~---~l~-~sp-dg~~ 455 (701)
|+.|++ -.+=..+.||+.++.... |.|.++|.. +..+.++. +|...... + +. -+. |++ +|.+
T Consensus 260 lrrHTnFtdYY~R~~nsDGkrIvFq~~-GdIylydP~----td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ 334 (668)
T COG4946 260 LRRHTNFTDYYPRNANSDGKRIVFQNA-GDIYLYDPE----TDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY 334 (668)
T ss_pred hhhcCCchhccccccCCCCcEEEEecC-CcEEEeCCC----cCcceeeecCCccccccccccccCHHHhhhhhccCCCcE
Confidence 455555 223335678888877555 889999987 44444443 22221111 1 11 111 332 5777
Q ss_pred EEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC-eEEEEe
Q 005342 456 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-KISIFS 531 (701)
Q Consensus 456 l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-~I~iwd 531 (701)
++..|. |...+. ++..+..++ -++...|.-..+. ++-++.|. || .+-++|
T Consensus 335 ia~VSR-GkaFi~---------------------~~~~~~~iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 335 IALVSR-GKAFIM---------------------RPWDGYSIQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred EEEEec-CcEEEE---------------------CCCCCeeEE----cCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 776665 556665 333344433 3577778877777 66778887 76 999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--
Q 005342 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-- 608 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~-- 608 (701)
..+++. ..+.+.-+.|.++..+|+| +++++.....|.+.|+.++.....-+...+-|+..+|||+++++|.+--+|
T Consensus 389 ~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 389 KDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred cCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence 987754 4555577889999999999 999999999999999999987654455567899999999999999886665
Q ss_pred --eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 609 --QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 609 --~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.|+++|+.+++.... . .+. +.-.+.+|.|||++|.-
T Consensus 468 tq~Iklydm~~~Kiy~v---T-T~t------a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 468 TQSIKLYDMDGGKIYDV---T-TPT------AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeEEEEecCCCeEEEe---c-CCc------ccccCcccCCCCcEEEE
Confidence 699999999863321 1 112 33367789999998874
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=4.2e-10 Score=115.29 Aligned_cols=207 Identities=12% Similarity=0.140 Sum_probs=148.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.||+. |+.++--.+.+.+++++.|++|++|.+....+.-......++...|..+|.++.|-.|-+++++ .||.+.+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCccee
Confidence 789999 9999888888999999999999999996322211111112355679999999999999887654 5788999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecc---cCCCCCCeEEEEec-CCEEEEE-e-CCeEEEEeCCCCcEEEEe
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI---AADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~v~~l~~s-~~~l~s~-s-dg~I~iwd~~~~~~~~~~ 541 (701)
||. --|+.+.... +.+..+.|.|+.-- ...++.+ + ..+|+++|.+.+.-...+
T Consensus 809 WDP---------------------Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 809 WDP---------------------FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred ecc---------------------cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence 964 3333221101 01222334444332 3344444 4 789999999887654433
Q ss_pred -----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE-EE
Q 005342 542 -----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WD 614 (701)
Q Consensus 542 -----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v-wd 614 (701)
.++...+.++++.|.| .+++|-.+|.|.+.|.++|+.+..++........++- |..+.++....|.++.| |.
T Consensus 868 kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeeh
Confidence 2445668999999999 9999999999999999999999988865555555543 66778888888999999 99
Q ss_pred CCCCe
Q 005342 615 AVGWK 619 (701)
Q Consensus 615 ~~~g~ 619 (701)
.-+|.
T Consensus 947 aldgi 951 (1034)
T KOG4190|consen 947 ALDGI 951 (1034)
T ss_pred hcCCe
Confidence 88864
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.6e-07 Score=97.55 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-----ECC-----Cc
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-----TQT-----AT 464 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-----s~d-----g~ 464 (701)
.+..++|++|+++|.+.. +.++|++.. .+. ..+.. ....+.++.|||.|.+|.+- ..+ -.
T Consensus 37 ~~v~~~S~~G~lfA~~~~-~~v~i~~~~----~~~-~~lt~----~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDN-QVVKVFEIA----TLK-VVLCV----ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred ceeEEEcCCCcEEEEEcC-CeEEEEEcc----CCc-EEEEe----ccceeeeeeecccccccccccccccccCCCCCCCc
Confidence 567889999999998876 778899886 332 12221 12389999999999987642 122 35
Q ss_pred EEEEecCCCCcc--------------------ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C---CEEE
Q 005342 465 HKLWKWQSNKQS--------------------LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLF 520 (701)
Q Consensus 465 i~vwd~~~~~~~--------------------~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~---~~l~ 520 (701)
+.+|++++.... .+.....-.+.+|+..+-..... .-|...|+.+.+| | ..++
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~---kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH---KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee---eeeccceeeEEecCCCCCceEE
Confidence 679998874330 00111122367777766443322 2356788999999 4 3444
Q ss_pred EE-----e-CCeEEEEeCCCCcE-----EEEecCCCCCeEEEEEcCCC--eEEEEe--CC---------CcEEEEeCCCC
Q 005342 521 SA-----S-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQD--LFAFGF--DD---------SSILVHCPCTK 576 (701)
Q Consensus 521 s~-----s-dg~I~iwd~~~~~~-----~~~~~~~~~~i~~l~~spdg--~l~~gs--~d---------g~I~iwd~~~~ 576 (701)
+- + -+.+++|-...... .++|- ...-..+.|.+-| +|+..+ -| .+++++++...
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 42 1 26899998752221 12221 1222467888877 333332 23 26888888744
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEE--EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 577 KTKAKLKGHQNRITCLAYSLSLNVLV--SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 577 ~~~~~l~~h~~~V~~v~~spdg~~l~--s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
...-.+. ..++|.++.|+|+|+-++ .|-.-.++.|+|++.. ++..+.. ++-+++-|+|.|++++.
T Consensus 262 s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~e------gpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 262 SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPE------GPRNTAFFNPHGNIILL 328 (566)
T ss_pred eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCC------CCccceEECCCCCEEEE
Confidence 4444443 578999999999997544 4667889999999873 3332332 56689999999999886
Q ss_pred -E---ecCeEEEEECCCCceeeeeee--eeEEEEEeeEEeee
Q 005342 655 -I---HEGQIDVYEAPTLNHTSQVLL--ISHIMFVQIVVKFH 690 (701)
Q Consensus 655 -g---~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~~~~~f~ 690 (701)
| --|.+.|||+.+.+++..+.. -+-+.|+|+.--|.
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFL 370 (566)
T ss_pred eecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEE
Confidence 5 368999999999999988887 77788888766554
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=9.4e-08 Score=98.09 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=173.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC----------------------CCCCeEEEEeccCCcccccccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------------------ANNETISLKDFPTVSNLRYASSIL 364 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------------------s~d~~i~lWd~~~~~~~~~~~~~~ 364 (701)
..|.+|+.+....+..+. | ..|. .+.|||+ ..++.+.+||..+|..+..
T Consensus 53 ~~V~~~~g~~~~~l~~~~-~-~~V~--~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s----- 123 (561)
T COG5354 53 AGVECWGGPSKAKLVRFR-H-PDVK--YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS----- 123 (561)
T ss_pred cceEEccccchhheeeee-c-CCce--ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-----
Confidence 456677766654333332 2 2355 6666666 5566899999999988776
Q ss_pred CCCCCCCCCCcccccCCCCCCCccccCCCc-eE-EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC
Q 005342 365 TDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR-ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG 442 (701)
Q Consensus 365 ~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~-~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~ 442 (701)
+.+.+. .. .| -+.|+-+..++|--.. ..++|+++...-....... -...
T Consensus 124 -----f~~~~q-----------------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~------lr~~ 174 (561)
T COG5354 124 -----FNGISQ-----------------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKN------LRPV 174 (561)
T ss_pred -----ccccCC-----------------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhh------cccc
Confidence 444322 11 34 5789988888775533 5688888631111111111 1236
Q ss_pred CEEEEEEecCCC--EEEE-----EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEe
Q 005342 443 RVVRLIYSHSGD--FLVA-----LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFAL 514 (701)
Q Consensus 443 ~v~~l~~spdg~--~l~s-----~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~ 514 (701)
.+....|+|.|+ .|+. .+..+.+++|.+ ..+.. .++.+. ...-..+.|
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI---------------------p~~s~l~tk~lf---k~~~~qLkW 230 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI---------------------PKNSVLVTKNLF---KVSGVQLKW 230 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc---------------------cCCCeeeeeeeE---eecccEEEE
Confidence 788888998753 2222 122344555533 33332 211111 111123445
Q ss_pred c--CCEEEEEe------------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCc
Q 005342 515 R--GSHLFSAS------------GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKK 577 (701)
Q Consensus 515 s--~~~l~s~s------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~ 577 (701)
. |+++++-. ...++++++.... +.......++|..++|.|++ -+++|..+..+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 5 65544311 2468888886433 33332467899999999998 4455678889999999866
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 578 ~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+...+ ..+.=+.+.|||.+++++.++.| |.|-+||..+.- .....+. + ....-+.|+|||+++.+
T Consensus 309 l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~-~-----~n~s~~~wspd~qF~~~ 376 (561)
T COG5354 309 LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFN-G-----LNTSYCDWSPDGQFYDT 376 (561)
T ss_pred eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEee-c-----CCceEeeccCCceEEEe
Confidence 44433 35556788999999999998876 579999998742 2221122 1 34466789999999886
Q ss_pred ---E----ecCeEEEEECCC
Q 005342 655 ---I----HEGQIDVYEAPT 667 (701)
Q Consensus 655 ---g----~Dg~I~iwd~~~ 667 (701)
| .|..|.|||+..
T Consensus 377 ~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 377 DTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cCCCcccccCcceEEEEecC
Confidence 3 288999999943
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=5.4e-09 Score=101.87 Aligned_cols=241 Identities=14% Similarity=0.167 Sum_probs=150.9
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-c-CCC--CCCCCEEEEEEecCC-CEEEEEECC
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-L-PDN--SFGGRVVRLIYSHSG-DFLVALTQT 462 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~-~~~--~~~~~v~~l~~spdg-~~l~s~s~d 462 (701)
-++|+- |++++++.|+..++++.. =.|.+|+++- +.++..+. + |.+ .-..-|++..|+|.. +.++..++.
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADd-LRINLWnlei---~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK 235 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADD-LRINLWNLEI---IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK 235 (433)
T ss_pred cccceeEeeeeeecCccceEeeccc-eeeeeccccc---cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence 568888 999999999999988765 7899999974 33333322 1 111 123468888999964 466777788
Q ss_pred CcEEEEecCCCCccccccccceeeEEe----eCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCC-CC
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLY----QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLE-TF 535 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~----d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~-~~ 535 (701)
|+|++.|++....-+.+. .++ |+.+.... .+--..|.++.|+ |+++++-+--+|++||+. ..
T Consensus 236 GtIrLcDmR~~aLCd~hs------KlfEepedp~~rsff-----seiIsSISDvKFs~sGryilsRDyltvk~wD~nme~ 304 (433)
T KOG1354|consen 236 GTIRLCDMRQSALCDAHS------KLFEEPEDPSSRSFF-----SEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA 304 (433)
T ss_pred CcEEEeechhhhhhcchh------hhhccccCCcchhhH-----HHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence 999999986443200000 000 11111111 1234578899999 888888777899999994 45
Q ss_pred cEEEEecCCC------------CCe---EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EeecCCCC--CeEEEEEec
Q 005342 536 QTLATFANPP------------PIA---TYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN--RITCLAYSL 596 (701)
Q Consensus 536 ~~~~~~~~~~------------~~i---~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~-~~l~~h~~--~V~~v~~sp 596 (701)
+++.+++.|. ..| ..++|+.++ .+++|+.....++++...|... .++..... ....+ .
T Consensus 305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~ 381 (433)
T KOG1354|consen 305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---L 381 (433)
T ss_pred CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---c
Confidence 6777776552 122 568899999 9999999999999997665432 22222111 12211 1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEE
Q 005342 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 664 (701)
Q Consensus 597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd 664 (701)
.-+.+.+++......+|- ..+. .. ..+...+|+|..+.+|+...+.++|+.
T Consensus 382 k~~~V~~~g~r~~~~~~v---------d~ld----f~----kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 382 KLRLVSSSGKRKRDEISV---------DALD----FR----KKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred cceeeecCCCcccccccc---------chhh----hh----hHHHhhccCCccceeeeeecCceEEec
Confidence 223444455443321110 1111 00 456778899999999998777777763
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=8.1e-08 Score=101.80 Aligned_cols=278 Identities=9% Similarity=0.096 Sum_probs=174.2
Q ss_pred EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCC
Q 005342 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDAD 405 (701)
Q Consensus 334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~ 405 (701)
|++|+.+ +.||.+++--+.+...-.. ..| +|..+.- ...+.|.||.. |.-+.|+.+.+
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----------~~g---laa~snL-smNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----------KSG---LAAASNL-SMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCccc----------ccc---ccccccc-chhhhhccCcceEEEEEeccccc
Confidence 8999887 8899999887765432211 111 1110000 02344889999 99999999999
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccccee
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 485 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~ 485 (701)
.|-+...+|-|.+|-+. .+.... .+..+...+.|.+++|+.||..+.....||.|.|=.++++
T Consensus 85 KLTtSDt~GlIiVWmly----kgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------ 147 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLY----KGSWCE-EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------ 147 (1189)
T ss_pred cccccCCCceEEEEeee----cccHHH-HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------
Confidence 99999999999999998 343221 1122335678999999999999999999999998755332
Q ss_pred eEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-------EEEE----ecCCCCCeEEE
Q 005342 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-------TLAT----FANPPPIATYF 551 (701)
Q Consensus 486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-------~~~~----~~~~~~~i~~l 551 (701)
++.-+.+... ....+.|+ .+.++.+- +|.+++||.+..- +... +......|-.+
T Consensus 148 ---------RIwgKeLkg~---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 148 ---------RIWGKELKGQ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred ---------eecchhcchh---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 2222222211 23356677 33344444 7999999975321 1111 11112234444
Q ss_pred EEc--------CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---------eEEEE
Q 005342 552 ILL--------PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------QLCVW 613 (701)
Q Consensus 552 ~~s--------pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~---------~I~vw 613 (701)
.|. ||- .++++..+|.+.|..-.+....-.+. ..-.+....|+++|.+||.++.|. .|.+|
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 443 566 89999999999887544332222222 225688899999999999988642 45555
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
..-. +.. ..++ ++ +..|++++|-..|-.+|..-|+.|++=++
T Consensus 295 sp~G-~i~--gtlk-vp------g~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 295 SPYG-HIV--GTLK-VP------GSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred ccch-hhe--EEEe-cC------CceeeeeEEcCCceEEEEEecceEEEEee
Confidence 4332 211 1222 11 16788888887777777666666665544
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=7.2e-07 Score=106.40 Aligned_cols=262 Identities=10% Similarity=-0.010 Sum_probs=154.7
Q ss_pred eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeec-CCC---------CCCCCEEEEEEecCCCEEEEEEC-C
Q 005342 395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-PDN---------SFGGRVVRLIYSHSGDFLVALTQ-T 462 (701)
Q Consensus 395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~-~~~---------~~~~~v~~l~~spdg~~l~s~s~-d 462 (701)
...++++++ |..+++-+.++.|.+||.. ......+.. ... ..-.....++++++++.|+++.. +
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~----G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD----GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC----CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 456888874 6677888888999999985 332222111 000 01234678999999887666655 5
Q ss_pred CcEEEEecCCCCcc--ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeCCCCc
Q 005342 463 ATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 463 g~i~vwd~~~~~~~--~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~~~~~ 536 (701)
+.|+++|..++... .|.... ..+...+..-. ...-.....++++ +..+ ++.+ ++.|++||..++.
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~-----g~~~~gg~~~~----~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTK-----GSDYQGGKKGT----SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcc-----cCCCCCChhhh----HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77888876443210 000000 00000000000 0001233577887 4444 4444 7899999997765
Q ss_pred EEEEecCC---------------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecC-------------C-
Q 005342 537 TLATFANP---------------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-------------H- 585 (701)
Q Consensus 537 ~~~~~~~~---------------~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~-------------h- 585 (701)
.. .+.+. -.....++++|+| ++++.+.++.|++||+.++.......+ +
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 22211 1234679999998 555667778999999987653211100 0
Q ss_pred -------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee--ccCCC--CCCCCCeEEEEEcCCCCEEEE
Q 005342 586 -------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGL--VPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 586 -------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~--~~~~~--~~~~~~v~~v~~spdg~~l~s 654 (701)
-.....++++++|+++++.+.+++|++||..++.......... ...+. ...-.....++++++|+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 1124688999999998999999999999998875321110000 00000 000135678999999997777
Q ss_pred E-ecCeEEEEECCCCce
Q 005342 655 I-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 655 g-~Dg~I~iwd~~~g~~ 670 (701)
. .++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 4 789999999998875
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.4e-07 Score=97.71 Aligned_cols=240 Identities=9% Similarity=0.095 Sum_probs=154.2
Q ss_pred CCCceEEEEEcCCCCeEEEEcC-----------CCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCCCEEEE
Q 005342 391 DNNQSRESTSLPDADSAVCAKS-----------LEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 391 ~h~~V~~l~~spdg~~l~s~s~-----------d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg~~l~s 458 (701)
.|++|..+.|||+.+||+|-+. ...++|||+. +|...+ +++. .+....-.-..||.|++++|.
T Consensus 248 ~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~----tG~lkr-sF~~~~~~~~~WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 248 YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA----TGLLKR-SFPVIKSPYLKWPIFRWSHDDKYFAR 322 (698)
T ss_pred cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc----ccchhc-ceeccCCCccccceEEeccCCceeEE
Confidence 6778999999999999998652 2578999998 665443 1111 111122234689999999887
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---C---CeEEEE
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKISIF 530 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---d---g~I~iw 530 (701)
-.. .+|.||+. .+-.++. ...-....|..+.|+ ++.||.-. + ..+.+.
T Consensus 323 m~~-~sisIyEt---------------------psf~lld--~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 323 MTG-NSISIYET---------------------PSFMLLD--KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred ecc-ceEEEEec---------------------Cceeeec--ccccCCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 665 56788853 2211111 111123567888888 66676544 1 467888
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC----------CCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCC
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFD----------DSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~----------dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg 598 (701)
.+.+++.+++-.-+.-.-+.+-|-.+| +|+.-.. =..+.|+.++.... +.... -...|...+|-|.|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~g 457 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHG 457 (698)
T ss_pred ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCC
Confidence 888888887766555455677788888 7765321 11455666655433 22222 45678999999999
Q ss_pred CEEEEEeC---CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE----ecCeEEEEECCC
Q 005342 599 NVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPT 667 (701)
Q Consensus 599 ~~l~s~s~---D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----~Dg~I~iwd~~~ 667 (701)
+.+++-+. ..++.+|.+++... ....+..++. ...+.+.|+|.|++++.+ ..|.+..+|..-
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCC-chhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 87766543 45788998884211 1122222322 446899999999999873 478899999863
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=3.5e-08 Score=94.97 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=162.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCC------------CCCEEEEEEecCCC--EEEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSF------------GGRVVRLIYSHSGD--FLVAL 459 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~------------~~~v~~l~~spdg~--~l~s~ 459 (701)
|+++.|...|.|+++|...|.|.++.-+... .| .++--.+.+| ...|..+.|..++. .++..
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 8999999999999999999999999876322 11 1100011222 34678888876653 56777
Q ss_pred ECCCcEEEEecCCCCc--------------c-ccccccceeeEEeeCCC-CeEEee----cccCCCCCCeEEEEec--CC
Q 005342 460 TQTATHKLWKWQSNKQ--------------S-LEEENVNMESQLYQPSS-KLVMTN----DIAADPKDSISCFALR--GS 517 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~--------------~-~g~~~~~~~i~~~d~~~-~~~~~~----~~~~~~~~~v~~l~~s--~~ 517 (701)
+.|.+|++|.+..... + .|.......+++-.... ..++.. .....|...|.++++. .+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999998755432 1 11111100011100000 011110 0113577889999998 66
Q ss_pred EEEEEeCCeEEEEeCCCCc---EEEEecCC-----CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce------E--
Q 005342 518 HLFSASGGKISIFSLETFQ---TLATFANP-----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------K-- 579 (701)
Q Consensus 518 ~l~s~sdg~I~iwd~~~~~---~~~~~~~~-----~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~------~-- 579 (701)
.++++.|-.|.+|++.-.. .+..+.+| ...|++..|+|.. .+...+..|.|++-|++...+ +
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 7788879999999986432 22333334 2357899999988 777788899999999984321 1
Q ss_pred --------EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC--------CCCCCe---
Q 005342 580 --------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--------PETTIV--- 640 (701)
Q Consensus 580 --------~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~--------~~~~~v--- 640 (701)
.-+.+-.+.|..+.|+|+|+++++-+. -+|++||+...+ .++.+++-+.. -....|
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k----~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK----NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc----CCceeechHHHHHHHHHhhhhccceeee
Confidence 111223356888999999999987765 589999999853 33332221110 000122
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
..+.||-|.+.+++| ..+...||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 457888888888876 455555555
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=8.4e-07 Score=95.45 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=119.9
Q ss_pred CEEEEEEecCCCE-EEEEECC-CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 443 RVVRLIYSHSGDF-LVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 443 ~v~~l~~spdg~~-l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
......|+|||+. ++..+.+ +.-.+| ++|..+++... +. ...+......|+ |+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-------------------v~dl~tg~~~~--lt-~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLY-------------------KYNLYTGKKEK--IA-SSQGMLVVSDVSKDGSK 246 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEE-------------------EEECCCCcEEE--Ee-cCCCcEEeeEECCCCCE
Confidence 6778999999985 5555554 233444 23556665332 11 234455567788 766
Q ss_pred EEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeE
Q 005342 519 LFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRIT 590 (701)
Q Consensus 519 l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~ 590 (701)
++... +..|+++|+.++... .+..+........|+||| .|+..+. .+ .|+++|+.+++..+.... +. .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence 65443 367999999877643 444343334567899999 6655553 33 789999988876443321 11 1
Q ss_pred EEEEecCCCEEEEEeCC---------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e--c
Q 005342 591 CLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--E 657 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~D---------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~--D 657 (701)
...|||||++++..+.. ..|++.|+.+|+. ..+. .+ .......|+|||+.++.. . .
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT---~~-----~~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLT---AN-----GVNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECC---CC-----CCcCCeEECCCCCEEEEEEccCCc
Confidence 24899999988876543 3788999988752 2222 22 122358899999988763 2 2
Q ss_pred CeEEEEECCCCceeeee
Q 005342 658 GQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 658 g~I~iwd~~~g~~~~~l 674 (701)
..+.+.++. |.....+
T Consensus 392 ~~L~~~~l~-g~~~~~l 407 (419)
T PRK04043 392 SALGIIRLN-YNKSFLF 407 (419)
T ss_pred EEEEEEecC-CCeeEEe
Confidence 247777874 4443434
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=2.9e-06 Score=87.64 Aligned_cols=263 Identities=13% Similarity=0.102 Sum_probs=152.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC--------C---------CCCeEEEEeccCCccccccccccCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------A---------NNETISLKDFPTVSNLRYASSILTDKPN 369 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s---------~d~~i~lWd~~~~~~~~~~~~~~~~~~~ 369 (701)
++|.+.|.++++.+.++..-.. .. .+ +||| + .+..|.+||..+.+....+ .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i--------~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-PN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI--------E 94 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-Cc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE--------c
Confidence 6788899999999988875432 33 33 8888 5 7899999999999988773 0
Q ss_pred CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc-C-CCcEEEEeccccCCCCceeE-eecCCCCCCCCEEE
Q 005342 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-S-LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVR 446 (701)
Q Consensus 370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-~-d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~ 446 (701)
+...+. +........++++|||++++... . +..|.+.|+. .++... +.. .+...-
T Consensus 95 ~p~~p~-------------~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~----~~kvv~ei~v-----p~~~~v 152 (352)
T TIGR02658 95 LPEGPR-------------FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE----GKAFVRMMDV-----PDCYHI 152 (352)
T ss_pred cCCCch-------------hhccCccceEEECCCCCEEEEecCCCCCEEEEEECC----CCcEEEEEeC-----CCCcEE
Confidence 111000 00011144688999999998776 3 6899999998 454333 222 111111
Q ss_pred EEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCC
Q 005342 447 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 525 (701)
Q Consensus 447 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg 525 (701)
...+++ .+ .+.+.||......+... |+. ...+..+++.+.. .+ ...+ ..... |.++.+...|
T Consensus 153 y~t~e~-~~-~~~~~Dg~~~~v~~d~~----g~~-~~~~~~vf~~~~~-~v-------~~rP--~~~~~dg~~~~vs~eG 215 (352)
T TIGR02658 153 FPTAND-TF-FMHCRDGSLAKVGYGTK----GNP-KIKPTEVFHPEDE-YL-------INHP--AYSNKSGRLVWPTYTG 215 (352)
T ss_pred EEecCC-cc-EEEeecCceEEEEecCC----Cce-EEeeeeeecCCcc-cc-------ccCC--ceEcCCCcEEEEecCC
Confidence 111111 11 12233443333322111 110 0000111111100 00 0112 11221 6666666689
Q ss_pred eEEEEeCCCC-----cEEEEecC-------CCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEee
Q 005342 526 KISIFSLETF-----QTLATFAN-------PPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKL 582 (701)
Q Consensus 526 ~I~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~spdg-~l~~gs----------~dg~I~iwd~~~~~~~~~l 582 (701)
.|.+.|+... +....+.. ......-++++|++ .+++.. ..+.|.++|..+++.+..+
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 9999996432 22332221 12334459999999 555532 1247999999999999988
Q ss_pred cCCCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCeee
Q 005342 583 KGHQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKKL 621 (701)
Q Consensus 583 ~~h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~~ 621 (701)
.. ...+..++++||++ +|++.. .++.|.+.|..+++.+
T Consensus 296 ~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 296 EL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred eC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 73 34689999999999 777655 5788999999997543
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=117.92 Aligned_cols=192 Identities=14% Similarity=0.232 Sum_probs=144.8
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (701)
Q Consensus 440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~ 517 (701)
+-..|.++.-+|...+-++|+.||.+++|.+..+. +++. ++......|+.+.|+ |+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------------------~v~~--~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------------------QVVC--FRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCC--------------------eEEE--eeccCcchhhhhhhcccCC
Confidence 45678888889999999999999999999763321 1222 222333788888888 77
Q ss_pred EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEE---eCCCcEEEEeCCC---CceEEeecCCCCCeE
Q 005342 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFG---FDDSSILVHCPCT---KKTKAKLKGHQNRIT 590 (701)
Q Consensus 518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~g---s~dg~I~iwd~~~---~~~~~~l~~h~~~V~ 590 (701)
.+..+. ||.+.+|.+. .+.....+.|......+.|-..+ ++++ +.++.+.+||.-- ...++ ..|.+.++
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred ceeeeccCCceeecccC-CcceeccccCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceee--eecCCCce
Confidence 777777 9999999986 56667777888888888876643 4433 4567999999542 23344 67999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
++++-|..+.|+|||.+|.|++||++..+ +. ++- .. +. ...++++| ..|.|+||++..-.
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrq------l~----h~~----~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQ------LR----HTF----QA----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHH------HH----HHh----hh----hh-hhheeeccCcccceEEEEccccc
Confidence 99999999999999999999999998742 22 221 11 33 45677776 89999999999888
Q ss_pred eeeeeee
Q 005342 670 HTSQVLL 676 (701)
Q Consensus 670 ~~~~l~~ 676 (701)
.++++++
T Consensus 2402 ll~~~p~ 2408 (2439)
T KOG1064|consen 2402 LLHTFPS 2408 (2439)
T ss_pred hhhcCch
Confidence 8998887
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=1.2e-06 Score=94.23 Aligned_cols=189 Identities=8% Similarity=-0.013 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCe-EEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342 395 SRESTSLPDADS-AVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~-l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd 469 (701)
.....|+|||+. ++..+. +..|.++|+. +++...+.. ..+......|+|||+.++.... ++.-.+|
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~----tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy- 260 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLY----TGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY- 260 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECC----CCcEEEEec----CCCcEEeeEECCCCCEEEEEEccCCCcEEE-
Confidence 557899999985 664433 3567788886 666555542 3455667789999998775543 4444444
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC----CeEEEEeCCCCcEEEEecC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG----GKISIFSLETFQTLATFAN 543 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd----g~I~iwd~~~~~~~~~~~~ 543 (701)
+++..++.... +. .+........|+ |+.|+..++ ..|+++|+.+++..+....
T Consensus 261 ------------------~~dl~~g~~~~--LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 261 ------------------LYDTNTKTLTQ--IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred ------------------EEECCCCcEEE--cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 22545555332 21 122223345688 877777663 2789999988776443321
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeE
Q 005342 544 PPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQL 610 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I 610 (701)
.. ....|+||| .++..+.. ..|++.|+.++... .+... .......|+|||++++..+.+ ..+
T Consensus 320 -g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 320 -GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred -CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence 11 134899999 66555433 37899999888653 34432 233457999999988765543 246
Q ss_pred EEEECCCC
Q 005342 611 CVWDAVGW 618 (701)
Q Consensus 611 ~vwd~~~g 618 (701)
.+.++...
T Consensus 395 ~~~~l~g~ 402 (419)
T PRK04043 395 GIIRLNYN 402 (419)
T ss_pred EEEecCCC
Confidence 77777664
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=3.2e-06 Score=90.70 Aligned_cols=289 Identities=9% Similarity=-0.013 Sum_probs=157.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD 381 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D 381 (701)
+.+.-+|..+|+.+...+-...... ......+ +.++.+..+|..+|+.+-.. .+.+..
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~~~~--~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~--------~~~~~~------- 137 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDERLSG--GVGADGGLVFVGTEKGEVIALDAEDGKELWRA--------KLSSEV------- 137 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCCccc--ceEEcCCEEEEEcCCCEEEEEECCCCcEeeee--------ccCcee-------
Confidence 4566677788888876654433222 2222222 66889999999888876541 111100
Q ss_pred CCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCC-CCEEEEEEecCCCEEEEE
Q 005342 382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFG-GRVVRLIYSHSGDFLVAL 459 (701)
Q Consensus 382 ~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~-~~v~~l~~spdg~~l~s~ 459 (701)
...... .+..++.++.++.+..||.. +++. +.......... ....+.... + ..++.+
T Consensus 138 -------------~~~p~v--~~~~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~ 196 (377)
T TIGR03300 138 -------------LSPPLV--ANGLVVVRTNDGRLTALDAA----TGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG 196 (377)
T ss_pred -------------ecCCEE--ECCEEEEECCCCeEEEEEcC----CCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE
Confidence 001111 24466777788999999987 4432 33221100000 000111111 2 356777
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCe-EEEEecCCEEEEEe-CCeEEEEeCCCCc
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSI-SCFALRGSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v-~~l~~s~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
+.+|.+..+|..++.. +|....+.... ... .....+ .+..+.+..++.++ +|.++.||.++|+
T Consensus 197 ~~~g~v~ald~~tG~~------------~W~~~~~~~~g~~~~--~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 197 FAGGKLVALDLQTGQP------------LWEQRVALPKGRTEL--ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred CCCCEEEEEEccCCCE------------eeeeccccCCCCCch--hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 7788888886543321 12111000000 000 000001 11222356677777 8999999999998
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
.+...... ....... ++ .+++++.+|.++.+|..+++.+-....... ...+... .+..+++++.+|.|+++|
T Consensus 263 ~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 263 VLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 88776521 1222222 34 778888999999999999987765432111 1222222 466888999999999999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCCCCEEEEEecCeEEEE
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVY 663 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spdg~~l~sg~Dg~I~iw 663 (701)
..+|+.+....+. . ..+ .+..+ .++++++.+.||.|+.+
T Consensus 337 ~~tG~~~~~~~~~-----~----~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 337 REDGSFVARLKTD-----G----SGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCCEEEEEEcC-----C----CccccCCEE-ECCEEEEEeCCceEEEe
Confidence 9998755322221 1 122 22222 34555555789988765
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=6.9e-07 Score=92.61 Aligned_cols=262 Identities=11% Similarity=0.056 Sum_probs=162.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
=+.+.|||-|+||+|-... .|.+|--.+ -+++.++. ...|.-+.|||+.+||++-+..-...-|+-
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~---f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d---- 278 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGES---FDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEEDD---- 278 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCcc---HHHHHhcc------CCCceeeecCCccceEEEecCCccccCccc----
Confidence 3468999999999998884 478996542 33444422 356899999999999999776432222211
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~ 550 (701)
...-.+.+||..+|.+... +.. +....-.-+.|| ++++|.-....|.||+..+..++..-.-.-+.|..
T Consensus 279 ------~e~~~l~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~ 351 (698)
T KOG2314|consen 279 ------NEGQQLIIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRD 351 (698)
T ss_pred ------CCCceEEEEEccccchhcc-eeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccC
Confidence 0111244556666664432 211 122222346777 77888777788999998775554433334567899
Q ss_pred EEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEE
Q 005342 551 FILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------DAQLCVWD 614 (701)
Q Consensus 551 l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd 614 (701)
..|+|.+ .||.=+.. ..+.+..+.+++.+++-.-|.-.=-.+-|-.+|.+|+.--+ -..+-|+.
T Consensus 352 FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEE
Confidence 9999999 77754332 26777888888777765544322234566678888875321 12344555
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--Ee--cCeEEEEECCC-C---ceeeeeee--eeEEEEEe
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH--EGQIDVYEAPT-L---NHTSQVLL--ISHIMFVQ 684 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g~--Dg~I~iwd~~~-g---~~~~~l~~--i~~~~fs~ 684 (701)
++... +....+. + ...|...+|-|.|..+++ |. ..++.+|.+++ + ++++.++. .+.+-|||
T Consensus 432 ireKd-Ipve~ve-l-------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP 502 (698)
T KOG2314|consen 432 IREKD-IPVEVVE-L-------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP 502 (698)
T ss_pred eeccC-CCceeee-c-------chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcC
Confidence 54421 1111111 1 177899999999988876 43 46799998873 2 34555555 67778877
Q ss_pred eE
Q 005342 685 IV 686 (701)
Q Consensus 685 ~~ 686 (701)
-.
T Consensus 503 kG 504 (698)
T KOG2314|consen 503 KG 504 (698)
T ss_pred CC
Confidence 53
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1.1e-05 Score=80.98 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=138.9
Q ss_pred EEEEec-CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE
Q 005342 446 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (701)
Q Consensus 446 ~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~ 522 (701)
+..|.+ +|..+++-...+.|..| ++.++....... . . ...+++. +..++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~---------------------~~~~~~~~~~~~---~-~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRV---------------------DPDTGEVEVIDL---P-G-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE---------------------ETTTTEEEEEES---S-S-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEE---------------------ECCCCeEEEEec---C-C-CceEEEEccCCEEEEE
Confidence 567888 55554454457888877 445555432111 1 1 5566666 6667777
Q ss_pred eCCeEEEEeCCCCcEEEEecC-----CCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEeecCCCCC
Q 005342 523 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 588 (701)
Q Consensus 523 sdg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~~~~~~~~l~~h~~~ 588 (701)
..+.+.++|..+++....... .....+.++++|+| +.++.... |.|+.++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 755566669988864433332 23456899999999 66665544 568888877 55444333 3456
Q ss_pred eEEEEEecCCCEEE-EEeCCCeEEEEECCCCe--eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 589 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 589 V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~--~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
.+.++|+|+++.|+ +-+..+.|..+++.... ......+..+.... +..-.+++.++|++.++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 79999999998664 66778899999986422 22222222222221 347789999999987775 688999999
Q ss_pred CCCCceeeeeee----eeEEEEEeeEEeeeecceEEEEeC
Q 005342 665 APTLNHTSQVLL----ISHIMFVQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 665 ~~~g~~~~~l~~----i~~~~fs~~~~~f~~~~~~~~~~~ 700 (701)
.. |+.+..+.. +++++|.. ...+..||.++
T Consensus 212 p~-G~~~~~i~~p~~~~t~~~fgg-----~~~~~L~vTta 245 (246)
T PF08450_consen 212 PD-GKLLREIELPVPRPTNCAFGG-----PDGKTLYVTTA 245 (246)
T ss_dssp TT-SCEEEEEE-SSSSEEEEEEES-----TTSSEEEEEEB
T ss_pred CC-ccEEEEEcCCCCCEEEEEEEC-----CCCCEEEEEeC
Confidence 86 998887765 77788741 23456677665
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=7.6e-08 Score=96.29 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=108.2
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEEEE
Q 005342 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHLFS 521 (701)
Q Consensus 443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l~s 521 (701)
....+..+|+++.++++..+....++++..+. +.-++... .+ ......++.+..+ ..+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~-----------------~~~kl~~~~~v-~~~~~ai~~~~~~-~sv~v 124 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENP-----------------KGAKLLDVSCV-PKRPTAISFIRED-TSVLV 124 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCC-----------------CcceeeeEeec-ccCcceeeeeecc-ceEEE
Confidence 34455677888888888888887777764432 11111111 01 1112233333333 22222
Q ss_pred E---e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEe
Q 005342 522 A---S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS 595 (701)
Q Consensus 522 ~---s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~s 595 (701)
+ + ...+.+|....+.+. .+-||-+.++.++++||+ +|+++..|..|++-....-..+..|. ||+..|..++.-
T Consensus 125 ~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred EeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 2 2 366777776655443 445799999999999999 99999999999998877666666554 699999999987
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
++ ..|+|||.|+++++||+.+|+...
T Consensus 204 ~~-~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 204 DN-YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred cC-ceeeecCCCCcEEEEecccCCccc
Confidence 54 458999999999999999997553
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=8.2e-08 Score=96.04 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=105.7
Q ss_pred CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEeecCCC
Q 005342 516 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQ 586 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~l~~h~ 586 (701)
+++++++. +....++++.... ....+.. ...-+++.+..+. .+..+..-| .+.+|....+... .+-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhh
Confidence 66777777 6676677765433 2223222 2223455555555 444444444 5556665555443 345799
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEEC
Q 005342 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 665 (701)
Q Consensus 587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~ 665 (701)
+-++.|+|+||+++++++..|..|+|-.... ...++++.-||. .-|..++.-++.. |++ |.|+++++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999988876 355555666776 8899999887655 666 58999999999
Q ss_pred CCCceeeeeee
Q 005342 666 PTLNHTSQVLL 676 (701)
Q Consensus 666 ~~g~~~~~l~~ 676 (701)
.+|+++.++..
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99999987765
No 284
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.74 E-value=2e-08 Score=91.67 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHhcccc--cccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHH
Q 005342 45 NVHRFGEIVMNGEWEKAEKYLSAFT--KLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCE 122 (701)
Q Consensus 45 ~~~~~~~~i~~G~w~~~~~~l~~~~--~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~ 122 (701)
++..++++|++|+++.|++.++... +...+ ..+.|.|+.|+|+|+|..++..+|+.+.|+.++|......+.++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~---~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~ 80 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRN---SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKK 80 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC---CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3778999999999999999998763 22222 228899999999999999999999999999998774335666777
Q ss_pred HHHHhccccchh--hhhccCCCCChhHHHHHHHHHHhhhccccccccccccccccchHHHHHHHHh
Q 005342 123 LAELLALKDLRE--NEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLI 186 (701)
Q Consensus 123 l~~~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p~~RL~~Ll~q~ 186 (701)
+..+|...+..+ .......- ....|+++++.+...+-. ....| +.+.|+.++++.
T Consensus 81 ~~~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~------~~~~~--~~s~L~~~~~~g 137 (145)
T PF10607_consen 81 LMSLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILK------SYGLP--KESPLEVILKAG 137 (145)
T ss_pred HHHHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHH------HhCcC--CCCHHHHHHHHH
Confidence 777887766432 11221111 447899999999998777 33333 357788888764
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.73 E-value=1.2e-05 Score=86.30 Aligned_cols=231 Identities=12% Similarity=0.025 Sum_probs=134.3
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
++..++.++.++.+..+|.. +|+. ++... ...+.+.... .+..++.++.+|.+..||..+++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~----tG~~~W~~~~-----~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~------- 166 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE----DGKELWRAKL-----SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE------- 166 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC----CCcEeeeecc-----CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc-------
Confidence 46778888889999999987 4443 33222 1222211111 24467777888999988653332
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC----C------e-E
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----I------A-T 549 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~----~------i-~ 549 (701)
.+|........ + .... ..+....+..++.+. +|.+..+|.++|+.+........ . + .
T Consensus 167 -----~~W~~~~~~~~---~--~~~~-~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 167 -----RLWTYSRVTPA---L--TLRG-SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred -----eeeEEccCCCc---e--eecC-CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 12221111000 0 0000 011122345666776 79999999999987765431100 0 0 1
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
+..+. ++.+++++.+|.++.||..+|+.+-.... .. ..... .++..++.++.||.++.+|..+|+.+-.. ..+
T Consensus 236 ~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~--~~~ 308 (377)
T TIGR03300 236 DPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN--DEL 308 (377)
T ss_pred ccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc--ccc
Confidence 11121 23777788899999999999987765542 11 11222 24667888889999999999998643211 101
Q ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 630 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
. + ....+... .+..++++ .+|.++++|..+|+.+..++.
T Consensus 309 ~-~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 309 K-Y-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred c-C-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 1 1 11122222 35566665 799999999999999888774
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.7e-08 Score=97.24 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=122.9
Q ss_pred Eec----CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----ceEEee
Q 005342 513 ALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAKL 582 (701)
Q Consensus 513 ~~s----~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-----~~~~~l 582 (701)
+|+ |..+.+|.+..|-+-|+++|.. +.|. ..+.|.++.|...+ ++..|+.+|.|..+|++.+ .+.+.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 566 5555555588999999988754 3343 56778888999878 9999999999999999875 345555
Q ss_pred cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE
Q 005342 583 KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 660 (701)
Q Consensus 583 ~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I 660 (701)
. |.+.|+++..-. ++++|.+.+.+|+|++||.+.-+ +.+.+. -..||... ..-.-+...+....+++ |+|...
T Consensus 296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K--~~~~V~-qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK--CKKSVM-QYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhh--ccccee-eeeccccc-ccccccccccccceEEEccCeeEE
Confidence 4 888999987666 78899999999999999998743 212233 12255411 11122334455555655 699999
Q ss_pred EEEECCCCceeeeeee--------eeEEEEEeeEEee
Q 005342 661 DVYEAPTLNHTSQVLL--------ISHIMFVQIVVKF 689 (701)
Q Consensus 661 ~iwd~~~g~~~~~l~~--------i~~~~fs~~~~~f 689 (701)
+||.+..|+++.+++. +.+++|+....++
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~sr~~k~ 407 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDSRLGKA 407 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehhcccccc
Confidence 9999999999999987 6677776655544
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.73 E-value=4.8e-06 Score=97.58 Aligned_cols=255 Identities=14% Similarity=0.167 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|.++.|-++...++.+..+|.|.+...+.......+..+- .-...|.+++||||+..++..+.+|++.+.+-.-..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 8899999999999999999999999332111133332222 135789999999999999999999988886432111
Q ss_pred c--------cccc--ccc-cee--eEEeeCCCCeEEe-----eccc---C---CCCCCeEEEEec--CCEEEEEe-C---
Q 005342 475 Q--------SLEE--ENV-NME--SQLYQPSSKLVMT-----NDIA---A---DPKDSISCFALR--GSHLFSAS-G--- 524 (701)
Q Consensus 475 ~--------~~g~--~~~-~~~--i~~~d~~~~~~~~-----~~~~---~---~~~~~v~~l~~s--~~~l~s~s-d--- 524 (701)
. ..|. .+. .+. -.-|.-..|+... .... . .....-..++|- |.++|+.+ +
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 1 0000 000 000 0000000111000 0000 0 023344577887 88988765 2
Q ss_pred ---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEeec----CCCCCeEEEE
Q 005342 525 ---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK----GHQNRITCLA 593 (701)
Q Consensus 525 ---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~~~~~~~l~----~h~~~V~~v~ 593 (701)
..++||+-+ |....+-..-.+--.+++|.|.| +||+... ...|.+|. ++|-.-..|. .....|..+.
T Consensus 234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence 478999975 66554444333344689999999 8888765 34677777 4443333332 3456899999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEE
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDV 662 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~i 662 (701)
|++|+..||..-.|. |.+|...+..-.....+. +... ..+..+.|+|.. ..|... .+|.+..
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~-----~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSS-----ESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCC-----CCCCceEECCCCCCEEEEEecCCcEEE
Confidence 999999999877665 999999987544334444 2222 345569999964 334443 4455544
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=2.1e-06 Score=81.51 Aligned_cols=197 Identities=8% Similarity=-0.062 Sum_probs=124.5
Q ss_pred CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeE---EEEecCCEEEEEe-CCeEE
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS---CFALRGSHLFSAS-GGKIS 528 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~---~l~~s~~~l~s~s-dg~I~ 528 (701)
..+|+.|+..|...+|...++ +.... +...|...|+ ..+-+...+..++ |.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn---------------------~~h~~-~cd~snn~v~~~~r~cd~~~~~~i~sndht~k 141 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTN---------------------DGHLY-QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGK 141 (344)
T ss_pred ccEEEeccccceeeeecccCc---------------------cccee-eecccccchhhhhhhcccccceeeccCCccee
Confidence 347899999999999966433 21100 1012222221 1112222344445 77777
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-c-eEE-eecCCCCCeEEEEEecCCCEEEEE
Q 005342 529 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-K-TKA-KLKGHQNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 529 iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~-~~~-~l~~h~~~V~~v~~spdg~~l~s~ 604 (701)
+.++..+..........-.+.++++++|+ +.++.+....|..|.+... + .++ .....+..-.+..|+.....+|++
T Consensus 142 ~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 142 TMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred EEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE
Confidence 77775443222221112347899999999 9999999999999988653 2 233 122233445778999988999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEE-ecCeEEEEECCCCceeeeee
Q 005342 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
+.||++.|||++...... ....+-..+|. +.+..+.|+|.|. +|..+ +-+.+.+-|+++++..+.+.
T Consensus 222 ~Qdg~~~I~DVR~~~tpm-~~~sstrp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPM-AEISSTRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ecCCcEEEEEecccccch-hhhcccCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 999999999999843211 11111222444 9999999999764 34445 67889999999988766553
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=2.3e-07 Score=87.53 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=96.2
Q ss_pred EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeC---
Q 005342 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASG--- 524 (701)
Q Consensus 449 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sd--- 524 (701)
.+--++.+++++.||.+.+.+.+.. -+++.+ +...|.+....-..+ ++.+.++.-
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~--------------------~~~~~~-i~~~~~~~as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKD--------------------LALMSR-IPSIHSGSASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred ccccCCceEecCCCceEEEEechHH--------------------Hhhhhh-cccccccccccceeecccEEecCCcceE
Confidence 3444567899999999999865220 001100 101111111111122 555554432
Q ss_pred ---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEec-C
Q 005342 525 ---GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSL-S 597 (701)
Q Consensus 525 ---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~sp-d 597 (701)
+..+.|+++..+....-......|++++-+|.. .+++|+.||.+-+||.+.... ...++.|+.+++.+-|+| +
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence 445666665433221111123348999999987 899999999999999998643 456678999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 005342 598 LNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~ 617 (701)
+..|.++++||.+--||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 77999999999999999885
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=8.1e-06 Score=81.33 Aligned_cols=217 Identities=14% Similarity=0.031 Sum_probs=127.7
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~ 492 (701)
+|.|..||..+ ....+...+ ........+. ..+++..+++++.++.+..||. .
T Consensus 2 ~g~l~~~d~~t---G~~~W~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~---------------------~ 54 (238)
T PF13360_consen 2 DGTLSALDPRT---GKELWSYDL--GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDA---------------------K 54 (238)
T ss_dssp TSEEEEEETTT---TEEEEEEEC--SSSCSSEEET-EEEETTEEEEEETTSEEEEEET---------------------T
T ss_pred CCEEEEEECCC---CCEEEEEEC--CCCCCCccce-EEEeCCEEEEEcCCCEEEEEEC---------------------C
Confidence 57788888862 333344332 1111222222 3445667888889999999854 5
Q ss_pred CCeEEe-ecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe-cCCC---CCeEEEEEcCCC-eEEEEeCC
Q 005342 493 SKLVMT-NDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF-ANPP---PIATYFILLPQD-LFAFGFDD 565 (701)
Q Consensus 493 ~~~~~~-~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~~~---~~i~~l~~spdg-~l~~gs~d 565 (701)
+|+.+- ..+....... ....+..+++++ ++.++.+|..+|+.+... .... ..........++ .++++..+
T Consensus 55 tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 55 TGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp TSEEEEEEECSSCGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred CCCEEEEeeccccccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc
Confidence 555332 1111111111 233366666666 899999999999998884 3221 111222333336 88888889
Q ss_pred CcEEEEeCCCCceEEeecCCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCC
Q 005342 566 SSILVHCPCTKKTKAKLKGHQNR----------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 635 (701)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~----------V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~ 635 (701)
+.|+.+|+++|+.+......... +..-....++ .+..++.++.+..+|+.+|+..-... .
T Consensus 132 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-------- 201 (238)
T PF13360_consen 132 GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-------- 201 (238)
T ss_dssp SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S--------
T ss_pred CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C--------
Confidence 99999999999998777654322 1122222244 67777777754444999997332111 1
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
..+... ..+++..+++. .++.+..||+.+|+.+-
T Consensus 202 --~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 202 --SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp --S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred --CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 222221 34667777765 69999999999998764
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.66 E-value=2.4e-05 Score=91.79 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=133.5
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec--
Q 005342 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-- 515 (701)
Q Consensus 440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s-- 515 (701)
..+.|.++.|.++...++.+..+|.|.+...+. ++.+.. ++ +.-...|.+++||
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-----------------~~~~~~~E~V-----G~vd~GI~a~~WSPD 131 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDP-----------------DPDEDEIEIV-----GSVDSGILAASWSPD 131 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccC-----------------CCCCceeEEE-----EEEcCcEEEEEECCC
Confidence 457899999999999999999999999983311 112222 22 2345689999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEE------------------------EEecC------------------------CCC
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTL------------------------ATFAN------------------------PPP 546 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~------------------------~~~~~------------------------~~~ 546 (701)
++.++..+ ++++.+.+- +...+ ..|.| ...
T Consensus 132 ~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd 210 (928)
T PF04762_consen 132 EELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD 210 (928)
T ss_pred cCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence 77777777 777766542 11111 11110 122
Q ss_pred CeEEEEEcCCC-eEEEEeC---C---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECC
Q 005342 547 IATYFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAV 616 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~---d---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~---D~~I~vwd~~ 616 (701)
.-..++|-.|| ++|+++- . ..+++|+. +|.+..+-..-.+--.+++|.|.|+++|+.-. ...|.+|...
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 34678999999 9888875 3 37999994 57665544433344457899999999998764 4567777755
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
. .+.....++ +. .. ...|..+.|++|+..||.-....|.+|-..+-.
T Consensus 290 G-LrhgeF~l~-~~-~~---~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 290 G-LRHGEFTLR-FD-PE---EEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred C-cEeeeEecC-CC-CC---CceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 4 222223333 21 11 278999999999999999644459999887754
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=9e-06 Score=97.15 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCceeEeecC------CCC-------CCCCEEEEEEec-CCCEEEEE
Q 005342 395 SRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLP------DNS-------FGGRVVRLIYSH-SGDFLVAL 459 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~~~------~~~-------~~~~v~~l~~sp-dg~~l~s~ 459 (701)
...+++.+++..|+.+. .++.|+.+|.. ++....+.-. ..+ .-.....++++| ++..+++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~----~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFV----NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecC----CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 56789999988665554 45778989886 4433332210 000 012346899999 45555666
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeec--c-cCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND--I-AADPKDSISCFALR--GSHLFSAS--GGKISIFSL 532 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~--~-~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~ 532 (701)
+.++.|++||..++.. ..+... |...... . ....-.....++++ |+.|+++. ++.|++||+
T Consensus 702 ~~~~~I~v~d~~~g~v-----------~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 702 AGQHQIWEYNISDGVT-----------RVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred CCCCeEEEEECCCCeE-----------EEEecC-CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 6789999998744321 111100 0000000 0 00111345678888 66565554 699999999
Q ss_pred CCCcEEEEecC-------------C--------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-------
Q 005342 533 ETFQTLATFAN-------------P--------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK------- 583 (701)
Q Consensus 533 ~~~~~~~~~~~-------------~--------~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~------- 583 (701)
.++.......+ . -.....++++++| .+++.+.++.|++||..++.......
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 87653211100 0 0123689999999 88888899999999998776543221
Q ss_pred ------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 584 ------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 584 ------~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
++-.....++++++|+++++.+.+++|++||+.+++.
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112567899999999999999999999999998754
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=1e-05 Score=76.89 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=142.5
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE-ecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~ 482 (701)
..+||.|+..|...+|... +.+.+... - ..+...|+-+.= .-..-.+..++.|.++++.+++.
T Consensus 84 c~~la~gG~~g~fd~~~~~----tn~~h~~~-c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~---------- 147 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACN----TNDGHLYQ-C-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG---------- 147 (344)
T ss_pred ccEEEeccccceeeeeccc----Ccccceee-e-cccccchhhhhhhcccccceeeccCCcceeEEEEec----------
Confidence 4588999999999999987 33222101 0 112222221111 11122466778888888887733
Q ss_pred ceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEe-cCCCCCeEEEEEcC
Q 005342 483 NMESQLYQPSSKL-VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATF-ANPPPIATYFILLP 555 (701)
Q Consensus 483 ~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~-~~~~~~i~~l~~sp 555 (701)
.+.. .+. . ..-.+.+++++ ++++++.+ ...|..|.+.... .+... ......-.+.+|+.
T Consensus 148 ---------~s~~~~~h--~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 148 ---------DSNKFAVH--N---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ---------Ccccceee--c---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 2222 221 1 11237788888 88888888 5889999886532 23322 22344557889999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEE-----eecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeeeeeeeee
Q 005342 556 QD-LFAFGFDDSSILVHCPCTKKTKA-----KLKGHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 556 dg-~l~~gs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
.. .+|+++.||++.|||++...... +-..|.+.+..+.|+|.|. +|...-.-+.+.+-|++++.......+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 99 99999999999999998754322 2234889999999998665 4555555678999999998543222211
Q ss_pred -eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 628 -SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 628 -~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
.....|. ...+..-.|+.++..+.+...-.+.-|++.+
T Consensus 294 ~d~~~~~~--tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 294 DDVERKHN--TQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred cccccccc--ccccccccccCCCcccccccchhhheeeccc
Confidence 0111111 1446777788777766665444555666643
No 294
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.2e-07 Score=90.96 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc--------hhHHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIF--------FNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFEL 84 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l 84 (701)
|+-+-|+|+.+|--+||.+||..|-++|++. .++..+++++++|+...|+.--+.-+..-. ..+..+.|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 5668899999999999999999999999998 248889999999999888877754421111 1112378999
Q ss_pred hhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhccccc
Q 005342 85 RKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLALKDL 132 (701)
Q Consensus 85 ~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~~~~ 132 (701)
+.|+|+||++.+++.+|+.+.++.++|.+......++....+|.++..
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999988789999999999998764
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=3.7e-07 Score=97.37 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=164.5
Q ss_pred CceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC--EEEEEECCCcEEEEec
Q 005342 393 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKW 470 (701)
Q Consensus 393 ~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~ 470 (701)
..++++..+|.|+-+|.++.-| +.+-|+.+.-..- +-+. ....-.|....|+|... +-++......-.+|++
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp--r~l~---h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP--RWLH---HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCc--eeee---ccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 3378899999999999999866 4455665321111 1111 11245677788887643 4444444555667876
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCc-EEEEecCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFANPP 545 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~ 545 (701)
.. .+..-+...+ .+|...|+++.|. ...+++++ |-.++.||+++.. .+..+..-.
T Consensus 99 A~-------------------ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 99 AK-------------------SSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred hc-------------------CCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 22 2222222212 4899999999999 66789999 9999999998754 455554445
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
.....+.|+... .+.+.+....|++||.+.| .++..+++|...|+.++|+. -...+.+++.|++|+.||........
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 667889999877 7777788889999999875 56788999999999999976 33467889999999999988743221
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeE---------EEEECCC-Cceeeeeee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQI---------DVYEAPT-LNHTSQVLL 676 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I---------~iwd~~~-g~~~~~l~~ 676 (701)
...+. . ..+|+.-.+-|-|.-.+. . .+..+ ..|+..+ .+.++++.|
T Consensus 239 ~~~vt---t-----~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 239 KRTVT---T-----NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred ceecc---c-----cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 11111 1 156666677775443332 1 22233 3444433 356777776
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.7e-07 Score=63.98 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.9
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
++++.++.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=2.5e-07 Score=98.68 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=149.7
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 515 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----- 515 (701)
.+.+.++..+|.|+-++.++.-|...+ |+. ++-+.-.+ +.....-.|-...|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld------------------~p~~ppr~---l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYII-DLD------------------DPFTPPRW---LHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEE-ecc------------------CCCCCcee---eeccCcchhcceecccCCCC
Confidence 467788899999999998888665443 441 11111111 111112235556676
Q ss_pred CCEEEEEeCCeEEEEeCCCC---cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEeecCCCCCe
Q 005342 516 GSHLFSASGGKISIFSLETF---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 589 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~-~~~~~l~~h~~~V 589 (701)
..++++.+...-.+|++... ...-.+-+|...|+.+.|+|.. .+++++-|..++.||+++. ..+..+..-....
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 44566666777788987532 2333456889999999999999 9999999999999999875 3455555555567
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEE-EecCeEEEEECC
Q 005342 590 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEAP 666 (701)
Q Consensus 590 ~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~s-g~Dg~I~iwd~~ 666 (701)
..|.|+. ++..+| .+..+.|++||.+.|. .++..+. +|. ..|+++.|..- ...+.+ +.|++|+.||..
T Consensus 162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs----~pl~s~K-~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGS----TPLCSLK-GHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred ceeeecccCcchhh-hccCCceEEEeccCCC----cceEEec-ccc---eeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 8899998 455554 5666789999999874 4454344 465 88999998764 233444 589999999997
Q ss_pred CCce--eeeeeeeeEEEEEeeEEeeeecceEEEEeC
Q 005342 667 TLNH--TSQVLLISHIMFVQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 667 ~g~~--~~~l~~i~~~~fs~~~~~f~~~~~~~~~~~ 700 (701)
+... -++.. -....|-++.+.|...+.+|.-+|
T Consensus 233 kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 233 KSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred ccccccceecc-ccCcceeccccccCceeEeccccC
Confidence 5432 12221 223445556666666665555444
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.9e-07 Score=96.27 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=123.1
Q ss_pred CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-------CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE
Q 005342 503 ADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 571 (701)
Q Consensus 503 ~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iw 571 (701)
.+|...|..++-- .+-+++++ |++|++|.++. ..+..+++.|+.+|.++.|-.+. .++ +.||.|++|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcceee
Confidence 4788888776544 66788888 99999999863 23677889999999999998887 655 568999999
Q ss_pred eCCCCceEEeecC--CCCCeEEEEEec--CCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342 572 CPCTKKTKAKLKG--HQNRITCLAYSL--SLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (701)
Q Consensus 572 d~~~~~~~~~l~~--h~~~V~~v~~sp--dg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s 646 (701)
|.--+.++..+.. ..+.+..+.--| +...++. ++...+|+++|.+.++-.+...+.+-+ +. ...+.+++..
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-~P---na~~R~iaVa 885 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-GP---NALTRAIAVA 885 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-CC---chheeEEEec
Confidence 9877766553321 222333333334 4444444 478999999999998755544443222 22 2678999999
Q ss_pred CCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 647 PDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 647 pdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|.|++++++ ++|.|.+.|.++|+.+..+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 999999998 899999999999998887654
No 299
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=5.2e-05 Score=80.32 Aligned_cols=264 Identities=12% Similarity=0.071 Sum_probs=155.4
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEec
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKL 421 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~ 421 (701)
.+.+.|||+.+++..... . . .. +....|||+|+.+|.... +.+.+++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~----------~-------------------~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~ 70 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLT----------P-------------------P-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDL 70 (353)
T ss_dssp EEEEEEEETTTTEEEESS------------------------------E-ETTBSEEEE-SSSTEEEEEET-TEEEEESS
T ss_pred ceeEEEEecCCCceEECc----------C-------------------C-ccccccceeecCCCeeEEEec-CceEEEEC
Confidence 578899999997765551 1 0 12 557899999999999876 78999987
Q ss_pred cccCCCCceeEeecCCCCC----------------CCCEEEEEEecCCCEEEEEECC-CcEEEEe---cCCCC--c----
Q 005342 422 QLINEPSECRTLLLPDNSF----------------GGRVVRLIYSHSGDFLVALTQT-ATHKLWK---WQSNK--Q---- 475 (701)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~----------------~~~v~~l~~spdg~~l~s~s~d-g~i~vwd---~~~~~--~---- 475 (701)
. ++...+++. .+. -+.-..+.|||||++|+....| ..+..+. ..... .
T Consensus 71 ~----~~~~~~lT~--dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~ 144 (353)
T PF00930_consen 71 A----TGQETQLTT--DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE 144 (353)
T ss_dssp T----TSEEEESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred C----CCCeEEecc--ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence 6 444444432 110 1223578899999999988764 4444443 22221 1
Q ss_pred -----cccccccceeeEEeeCCCCeEEeeccc---CCCCCCeEEEEec--CCEEEEEe---C---CeEEEEeCCCCcEEE
Q 005342 476 -----SLEEENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSAS---G---GKISIFSLETFQTLA 539 (701)
Q Consensus 476 -----~~g~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~v~~l~~s--~~~l~s~s---d---g~I~iwd~~~~~~~~ 539 (701)
..|.....+.+.+++..+++....... ......+..+.|. +..++..- + ..+.++|..++....
T Consensus 145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 456666777899999998875321121 1335678889998 55244332 2 357778887776433
Q ss_pred EecC-CCCC---eEEEEEc-CCC--eEEEEeCCC--cEEEEeCCCCceEEeecCCCCCeEE-EEEecCCCEEE-EEeC--
Q 005342 540 TFAN-PPPI---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITC-LAYSLSLNVLV-SSGA-- 606 (701)
Q Consensus 540 ~~~~-~~~~---i~~l~~s-pdg--~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~-v~~spdg~~l~-s~s~-- 606 (701)
.... .... .....+. +++ ++.....+| .|++++...+... .+....-.|+. +.|+++++.|. ++..
T Consensus 225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCC
Confidence 3221 1222 2355554 666 666666888 5677777666543 45544556755 68888877654 4444
Q ss_pred --CCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 607 --DAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 607 --D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
...++.-++. .++..+ +.... .....+.|||+|++++.
T Consensus 304 p~~r~lY~v~~~~~~~~~~------LT~~~----~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKC------LTCED----GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp TTSBEEEEEETTETTEEEE------SSTTS----STTEEEEE-TTSSEEEE
T ss_pred CCceEEEEEEeCCCCCeEe------ccCCC----CCceEEEECCCCCEEEE
Confidence 3367777777 654332 22222 22269999999999886
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.54 E-value=3e-05 Score=75.05 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC---CCCCCEEEEEEecCC------CEEEEEECCCcE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSG------DFLVALTQTATH 465 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~---~~~~~v~~l~~spdg------~~l~s~s~dg~i 465 (701)
=+.++||||+..||.+...|+|+++|+. +..+..+..... .-...|..+.|.+-. ..|++...+|.+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~----g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM----GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc----cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 5579999999999999999999999996 555554432111 123456667665432 246667777888
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+-|-+..+. .... +.....+.......|.++.++ .+.|++|+ ... +++. -
T Consensus 122 ~Sy~vs~gt----------------~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s 175 (282)
T PF15492_consen 122 RSYLVSVGT----------------NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----S 175 (282)
T ss_pred eeEEEEccc----------------CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----c
Confidence 877542110 0111 111112333456789999999 45666665 211 0100 0
Q ss_pred cCCCCCeEEEEEcCCC---eEEEEeCCCc------EEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 542 ANPPPIATYFILLPQD---LFAFGFDDSS------ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg---~l~~gs~dg~------I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
......+++-.+-.+. ..++..+|+. -.+|.+-+.+...........|..+..||||+.||+...+|.|.+
T Consensus 176 ~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 176 KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSL 255 (282)
T ss_pred cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence 0112223332222222 2222222221 123333322222211224568999999999999999999999999
Q ss_pred EECCCCe
Q 005342 613 WDAVGWK 619 (701)
Q Consensus 613 wd~~~g~ 619 (701)
|++.+=+
T Consensus 256 W~iPsL~ 262 (282)
T PF15492_consen 256 WEIPSLR 262 (282)
T ss_pred EecCcch
Confidence 9999843
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.51 E-value=8.7e-05 Score=74.13 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=114.3
Q ss_pred EEec--CCEEEEEe-C-----CeEEEEeCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEe------------------
Q 005342 512 FALR--GSHLFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------ 563 (701)
Q Consensus 512 l~~s--~~~l~s~s-d-----g~I~iwd~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs------------------ 563 (701)
-.|| |++|++.- | |.|-|||.. +.+.+..+..+.-....+.+.||| .|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4567 88888764 3 899999998 667888888776667888999999 555542
Q ss_pred CCCcEEEEeCCCCceEEe--e--cCCCCCeEEEEEecCCCEEEEEeCCC-------eEEEEECCCCeeeeeeeeee-ccC
Q 005342 564 DDSSILVHCPCTKKTKAK--L--KGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS-FQT 631 (701)
Q Consensus 564 ~dg~I~iwd~~~~~~~~~--l--~~h~~~V~~v~~spdg~~l~s~s~D~-------~I~vwd~~~g~~~~~~~l~~-~~~ 631 (701)
.+.++...|..+|+++.. + .-|...|..++++++|..++..-..| -+.+++.... ........ ...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHH
Confidence 233577778889988876 4 22777899999999998666543332 2444433321 11011000 000
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee--eeEEEEE
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL--ISHIMFV 683 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~--i~~~~fs 683 (701)
... +.+-+|++++++.++++ + .-+.+.+||..+|+.+...+- +.+++-.
T Consensus 214 ~l~---~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~ 266 (305)
T PF07433_consen 214 RLN---GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPT 266 (305)
T ss_pred hhC---CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeec
Confidence 111 77899999999998876 4 688999999999999887776 5555443
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.3e-06 Score=86.78 Aligned_cols=260 Identities=11% Similarity=-0.078 Sum_probs=169.1
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW 468 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vw 468 (701)
.|.. |..+ +-.-.+++.+++-||.++.|.-... ....+..-+..|...|.+++.+-+|..+.+.+. |..++++
T Consensus 7 mhrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~i----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRI----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeE-eeehhheEEeeecchhhhhcCCCCc----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 4666 4443 3345579999999999999987521 111222122357788999999999999999787 9999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCC---EEEEEe--CCeEEEEeCCCCc--EEEEe
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS---HLFSAS--GGKISIFSLETFQ--TLATF 541 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~---~l~s~s--dg~I~iwd~~~~~--~~~~~ 541 (701)
|++.- |..++.-.. . ..+.+..+.-.|. .+++.. +|.+.++|-...- ....-
T Consensus 82 DvEn~----------------DminmiKL~--~---lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 82 DVENF----------------DMINMIKLV--D---LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred Eeecc----------------chhhhcccc--c---CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 87442 222222110 1 1122211111131 344444 6899999965432 33333
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC------CceEEeec---------CCCCCeEEEEEecCCCEEEEEe
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------KKTKAKLK---------GHQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~------~~~~~~l~---------~h~~~V~~v~~spdg~~l~s~s 605 (701)
.-|..+|.++.+.+.+ .+++....|-|.-|.... .+....++ -......++.|+|+|..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 4578999999999999 899999999999998762 11111111 1345678999999999999999
Q ss_pred CCCeEEEEECCCCeeeeee-------------e--eeeccCCCC--------C-CCCCeEEEEEcCCCCEEEEEecCeEE
Q 005342 606 ADAQLCVWDAVGWKKLCSK-------------F--LHSFQTGLV--------P-ETTIVNHIQFHPDQIHLLSIHEGQID 661 (701)
Q Consensus 606 ~D~~I~vwd~~~g~~~~~~-------------~--l~~~~~~~~--------~-~~~~v~~v~~spdg~~l~sg~Dg~I~ 661 (701)
.|.+|++++.++|+..... + +..+.-+.. . ....-+.+.|...|++|+.|.-=.|+
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gik 300 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIK 300 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEE
Confidence 9999999999998643310 0 000000000 0 01234567899999999988766799
Q ss_pred EEECCCCceeeeeee
Q 005342 662 VYEAPTLNHTSQVLL 676 (701)
Q Consensus 662 iwd~~~g~~~~~l~~ 676 (701)
+.++.++++++.+-.
T Consensus 301 vin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 301 VINLDTNTVVRILGK 315 (558)
T ss_pred EEEeecCeEEEEecc
Confidence 999999998877643
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=7.5e-05 Score=85.00 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC-
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN- 473 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~- 473 (701)
|.++.|.-++..++.+..+|.|.+-|.. +.....+. .-.+.|.+++||||+..++..+.++++.+-+-.-.
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~e----t~~~eivg----~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPE----TLELEIVG----NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEccc----ccceeeee----eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 8899999999999999999999999886 33322211 13678999999999999999999888877543111
Q ss_pred ---Cc------ccccccc-cee--eEEeeCCCCeEEeec------ccC--CCCCCeEEEEec--CCEEEEE-----eC-C
Q 005342 474 ---KQ------SLEEENV-NME--SQLYQPSSKLVMTND------IAA--DPKDSISCFALR--GSHLFSA-----SG-G 525 (701)
Q Consensus 474 ---~~------~~g~~~~-~~~--i~~~d~~~~~~~~~~------~~~--~~~~~v~~l~~s--~~~l~s~-----sd-g 525 (701)
.. ..++.+. .+. -.-+....|+..... ... .-.+.=++++|- |+++++. .+ .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11 0011100 000 000111111100000 000 011122357787 8888873 34 7
Q ss_pred eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecC
Q 005342 526 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spd 597 (701)
.|++||.+ |..-..-......-.+++|-|.| .+++-. .|+.|.+|.. +|-. .-.+.-....|..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 99999986 54333222223344789999999 877653 4457888874 4432 2223323445999999999
Q ss_pred CCEEEE---EeCCCeEEEEECCCCeeeeeeeee
Q 005342 598 LNVLVS---SGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 598 g~~l~s---~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
+..||. ......|++|-+.+..-.....+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~ 333 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ 333 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence 998887 555556999999986543333333
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.46 E-value=0.00024 Score=68.98 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=127.3
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
.++.++||+.||.-.+ ..|.|-...+.-.+- ..+...+.. ....=..++||||+..||.+...|+|+++|+.+...
T Consensus 2 ~~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si-~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-QCIEIRSAKDDFSSI-IGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred ceeecCCCcEEEEEec-cEEEEEeccCCchhe-eEEEecCCC-CCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-
Confidence 4677889998887654 556555543211111 112122322 334456799999999999999999999999855432
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---------CCEEEEEeCCeEEEEeCC-----CCcEEEEec
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---------GSHLFSASGGKISIFSLE-----TFQTLATFA 542 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---------~~~l~s~sdg~I~iwd~~-----~~~~~~~~~ 542 (701)
+......- ....-..+|..+.|- -+.++..-+|.++-|-+. ..+..+.+.
T Consensus 78 ------------f~I~p~~~----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 78 ------------FVIPPAMS----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred ------------EEcCcccc----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 11110000 001122344444443 234444447777666542 223444443
Q ss_pred ---CCCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE--EEEEeCCCe------
Q 005342 543 ---NPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV--LVSSGADAQ------ 609 (701)
Q Consensus 543 ---~~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~--l~s~s~D~~------ 609 (701)
.....|.++.++|.. ++++ |+.... ++. . ++-...+++=..-.+..+ .++..+|+.
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~-------~~~--s--~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQ-------DGM--S--KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCCC-------Ccc--c--cccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 236789999999998 4444 444331 110 0 011112222111111111 122222221
Q ss_pred EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
-.+|.+-+.+ ... ..... ...|..+..||||..||+- .+|.|.+|++.+.++.+.+.
T Consensus 211 ~~~~~~~~~~-----~fs-~~~~~---~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 211 RGLLRIPSFK-----FFS-RQGQE---QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cceeecccee-----eee-ccccC---CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 2333333311 111 11111 2789999999999999995 79999999999887766654
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.45 E-value=0.00022 Score=70.97 Aligned_cols=217 Identities=16% Similarity=0.075 Sum_probs=128.6
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEecc
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~ 422 (701)
+++|..||..+|+.+-.. .+.. +.....+ ...+++..+++++.++.+..||..
T Consensus 2 ~g~l~~~d~~tG~~~W~~--------~~~~------------------~~~~~~~-~~~~~~~~v~~~~~~~~l~~~d~~ 54 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY--------DLGP------------------GIGGPVA-TAVPDGGRVYVASGDGNLYALDAK 54 (238)
T ss_dssp TSEEEEEETTTTEEEEEE--------ECSS------------------SCSSEEE-TEEEETTEEEEEETTSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEE--------ECCC------------------CCCCccc-eEEEeCCEEEEEcCCCEEEEEECC
Confidence 688999999999887661 1100 0011111 133466777777889999999987
Q ss_pred ccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-c
Q 005342 423 LINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-D 500 (701)
Q Consensus 423 ~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~ 500 (701)
+|+ .+....+... ... . ..++..+++++.++.+..+|. .+|+..-. .
T Consensus 55 ----tG~~~W~~~~~~~~--~~~---~-~~~~~~v~v~~~~~~l~~~d~---------------------~tG~~~W~~~ 103 (238)
T PF13360_consen 55 ----TGKVLWRFDLPGPI--SGA---P-VVDGGRVYVGTSDGSLYALDA---------------------KTGKVLWSIY 103 (238)
T ss_dssp ----TSEEEEEEECSSCG--GSG---E-EEETTEEEEEETTSEEEEEET---------------------TTSCEEEEEE
T ss_pred ----CCCEEEEeeccccc--cce---e-eecccccccccceeeeEeccc---------------------CCcceeeeec
Confidence 554 3443331111 111 1 334556777778888887754 44543322 0
Q ss_pred ccC--CCC-CCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe----------EEEEEcCCCeEEEEeCCC
Q 005342 501 IAA--DPK-DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----------TYFILLPQDLFAFGFDDS 566 (701)
Q Consensus 501 ~~~--~~~-~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i----------~~l~~spdg~l~~gs~dg 566 (701)
... ... .......+.++.++.+. ++.|..+|.++|+.+..+....... ..-....++.+..++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred cccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 100 011 11222333377788887 8999999999999988886543221 122222233666777777
Q ss_pred cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
.+.-+|+.+++.+-... ...+.. ...+++..|+.++.++.|..||+++|+.
T Consensus 184 ~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 64444999998654322 222322 1356778888888999999999999964
No 306
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.43 E-value=1.9e-07 Score=70.20 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=44.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChh
Q 005342 45 NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERT 99 (701)
Q Consensus 45 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~ 99 (701)
++..++++|+.|+|++|++.++..........+. +.|.|++|+|+||++.++..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~~ 57 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKLE 57 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCcC
Confidence 4789999999999999999999885444334433 99999999999999988653
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.43 E-value=0.00046 Score=69.10 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=133.3
Q ss_pred EEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe-cCCCEEEEEECCCcEEEEecCCCC
Q 005342 397 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS-HSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 397 ~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s-pdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
++.|.+ ++.++++.-..+.|..|+.. ++....+.. .....+++. ++|. ++.+...+ +.++|.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~----~~~~~~~~~------~~~~G~~~~~~~g~-l~v~~~~~-~~~~d~---- 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPD----TGEVEVIDL------PGPNGMAFDRPDGR-LYVADSGG-IAVVDP---- 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT----TTEEEEEES------SSEEEEEEECTTSE-EEEEETTC-EEEEET----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECC----CCeEEEEec------CCCceEEEEccCCE-EEEEEcCc-eEEEec----
Confidence 578998 77778887788999999987 554443332 227778888 6654 55555544 444454
Q ss_pred ccccccccceeeEEeeCCCCeEEe--ecccCC-CCCCeEEEEec--CCEEEEEe-C--------CeEEEEeCCCCcEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMT--NDIAAD-PKDSISCFALR--GSHLFSAS-G--------GKISIFSLETFQTLAT 540 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~--~~~~~~-~~~~v~~l~~s--~~~l~s~s-d--------g~I~iwd~~~~~~~~~ 540 (701)
.+++... ...... .....++++++ |++.++.. . |.|..++.. ++....
T Consensus 68 -----------------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 68 -----------------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp -----------------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred -----------------CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 4443211 101011 34567788998 66555543 2 457888876 554433
Q ss_pred ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 005342 541 FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 611 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~ 611 (701)
.. .-...+.++|+|++ ++++-+..+.|+.+++.... ....+....+..-.+++.++|++.++.-..+.|.
T Consensus 130 ~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 130 AD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 33 34456899999999 45577788899999986322 1222232223478899999999888888899999
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEE
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLS 654 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~s 654 (701)
++|.. |+.. ..+. ++ . ..+++++| .|+.+.|+.
T Consensus 209 ~~~p~-G~~~--~~i~-~p---~---~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 209 VFDPD-GKLL--REIE-LP---V---PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEETT-SCEE--EEEE--S---S---SSEEEEEEESTTSSEEEE
T ss_pred EECCC-ccEE--EEEc-CC---C---CCEEEEEEECCCCCEEEE
Confidence 99988 6533 2233 22 1 56899999 477665554
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=86.19 Aligned_cols=149 Identities=8% Similarity=0.112 Sum_probs=110.2
Q ss_pred EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
++.+.+..|-+-++. ++.-.. + ...+.|.++.|...++.+..|+.+|.|.++|++...
T Consensus 228 fs~G~sqqv~L~nve----tg~~qs--f---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn------------- 285 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVE----TGHQQS--F---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN------------- 285 (425)
T ss_pred ecccccceeEEEEee----cccccc--c---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc-------------
Confidence 455666778888887 553222 1 146789999999999999999999999999986542
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE---EEEecCCCCCeEE--EEEcCCC-
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATY--FILLPQD- 557 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~---~~~~~~~~~~i~~--l~~spdg- 557 (701)
--++...+. + -|.+.|+++..- +.+|++.+ +|+|++||.+--++ +.++.||-..-.- +-+.+..
T Consensus 286 ---qG~~~~a~r-l--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg 359 (425)
T KOG2695|consen 286 ---QGNGWCAQR-L--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG 359 (425)
T ss_pred ---cCCCcceEE-E--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence 122233322 2 377888887654 77888777 99999999987666 8899998554333 3344555
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKG 584 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~ 584 (701)
.|+++++|...+||.++.|.++.++..
T Consensus 360 ~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEccCeeEEEEEecccCceeeccCC
Confidence 889999999999999999999888764
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=3.4e-07 Score=99.36 Aligned_cols=211 Identities=12% Similarity=0.123 Sum_probs=145.4
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC--c
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--T 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~ 464 (701)
.++.|+. .++++|+-+.+.|+.|+..|.|+++++. +|.-.. ..+.|...|+.+.-+.||..+++.+.-. -
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~----sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS----SGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEcc----Cccccc---cccccccccccccccCCcceeeeeccccCch
Confidence 3778888 9999999999999999999999999998 554333 3457999999999999999877766532 4
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
..+|+... .+.. .| -..-.++.|+ -..-+.|+ .....+||++|+..+.+
T Consensus 1169 saLW~~~s--------------------~~~~-------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1169 SALWDASS--------------------TGGP-------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred HHHhcccc--------------------ccCc-------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 56675421 1111 11 1234466777 22223344 56789999999987776
Q ss_pred ec-C---CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 541 FA-N---PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 541 ~~-~---~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
+- + ....-.+..|+|+. +|+ .|| .+||++..+.++.|..-+..+ .-.|+|.|.-++..++ |||+
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~ 1290 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDM 1290 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhh
Confidence 42 1 12233778899999 655 345 579999988888776544222 2379999998887775 9999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
++-+ .++.++. -.-..|.|+..|..++.
T Consensus 1291 RTF~-----lLh~VP~------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1291 RTFK-----LLHSVPS------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHHH-----HHhcCcc------ccceEEEeccCccchhh
Confidence 9953 2332221 22357889888887665
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.36 E-value=3.5e-06 Score=79.71 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=90.9
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-----CCcEEEEecCCCC
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNK 474 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-----dg~i~vwd~~~~~ 474 (701)
.+-.++.+++++.||.+.+++.+. ...+..........-.+..+...++.+.++.. -+..+.|++
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~------~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~---- 166 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDK------DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL---- 166 (319)
T ss_pred ccccCCceEecCCCceEEEEechH------HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc----
Confidence 344567899999999999999862 11111000000111122233344555444332 133334433
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE-EEEecCCCCCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIAT 549 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~-~~~~~~~~~~i~ 549 (701)
++.+..... ......|++++-+ .+.+++|+ ||.+-+||.+.... ...+..|+.++.
T Consensus 167 ---------------~p~~t~~~~----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 167 ---------------DPIKTLIPS----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW 227 (319)
T ss_pred ---------------ccccccccc----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence 222222211 1123347788777 55677777 89999999988753 345678999999
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342 550 YFILLPQD--LFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 550 ~l~~spdg--~l~~gs~dg~I~iwd~~~ 575 (701)
.+-|+|.. .++++++||.+..||..+
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999988 999999999999999764
No 311
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=8.5e-06 Score=78.86 Aligned_cols=227 Identities=11% Similarity=0.139 Sum_probs=137.9
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----
Q 005342 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 515 (701)
Q Consensus 440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---- 515 (701)
....|+++.|...|.|+++|...|.|.++.-+...-..-+....+. -.+++-..+.. + .-...|..+.|-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFDYLkS--l--eieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFDYLKS--L--EIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchhhhhh--c--cHHHHhhheeeecCCC
Confidence 4577999999999999999999999999854221100000000000 00000000000 0 112456667776
Q ss_pred -CCEEEEEeCCeEEEEeCCCCcE--E----------------------------------------EEe-cCCCCCeEEE
Q 005342 516 -GSHLFSASGGKISIFSLETFQT--L----------------------------------------ATF-ANPPPIATYF 551 (701)
Q Consensus 516 -~~~l~s~sdg~I~iwd~~~~~~--~----------------------------------------~~~-~~~~~~i~~l 551 (701)
..+|+++.|.+|++|-+..... + +.+ ..|...|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 4467777799999998753310 0 011 2455567888
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEeecCCC-----CCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCee-
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQ-----NRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK- 620 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~~l~~h~-----~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~- 620 (701)
++..|. .+++ ..|-.|-+|++.-.. .+-.++.|. ..|++..|+|. .+.+...+..|.|++-|++....
T Consensus 179 S~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 888888 5554 567789999976421 223334443 36889999995 44666777889999999984211
Q ss_pred -----eeeeeeee----ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC-Cceeeeeee
Q 005342 621 -----LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQVLL 676 (701)
Q Consensus 621 -----~~~~~l~~----~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~-g~~~~~l~~ 676 (701)
.....+.. +..+-. ..|..+.|+|+|+++++-+=.+++|||++. ..++++++-
T Consensus 258 dn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred cCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeech
Confidence 00011110 001111 567889999999999987778999999975 457788754
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.4e-06 Score=85.55 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=142.5
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342 440 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (701)
Q Consensus 440 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~ 517 (701)
|...|+.+..+ -.+++++++.||.++.|.- ...+|.-..+.+ ..|...|.+++.+ |-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkK-------------------s~isGvEfVKhF-raHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKK-------------------SRISGVEFVKHF-RAHLGVILSLAVSYDGW 66 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCC-------------------CCccceeehhhh-HHHHHHHHhhhccccce
Confidence 66777776554 4568999999999999943 111232111112 2577788888888 55
Q ss_pred EEEEEe--CCeEEEEeCCCCcEEEEecC--CCCCeEEEEEcCCC---eEEEE-eCCCcEEEEeCCCCc-eEEeecC-CCC
Q 005342 518 HLFSAS--GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKLKG-HQN 587 (701)
Q Consensus 518 ~l~s~s--dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~spdg---~l~~g-s~dg~I~iwd~~~~~-~~~~l~~-h~~ 587 (701)
.+.+.+ |..++++|+++...+.-+.. .+..+. ...+|.. .|+++ ..+|.|.++|-.... ....+.+ |.+
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 566644 79999999987655433321 223332 3333432 55544 456799999976543 3344444 999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCC------CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVG------WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 660 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~------g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I 660 (701)
+|..+.++|-+..++|....|.|.-|.... ++........+..-+-........++.|+|+|..+.+ +.|..|
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence 999999999999999999999999999874 1000000000000011112266789999999999998 699999
Q ss_pred EEEECCCCceeeeeee
Q 005342 661 DVYEAPTLNHTSQVLL 676 (701)
Q Consensus 661 ~iwd~~~g~~~~~l~~ 676 (701)
++++..+|++++.+..
T Consensus 226 R~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDE 241 (558)
T ss_pred EEEEeccchhhhhhhc
Confidence 9999999999887765
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=5.9e-06 Score=89.76 Aligned_cols=151 Identities=16% Similarity=0.224 Sum_probs=113.6
Q ss_pred CCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342 506 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 583 (701)
Q Consensus 506 ~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~ 583 (701)
...++|.++++++++.|+ +|.|++++... .. .+...|... .-+| ++++|+.||+|.|-.+-+.+...++.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 356777778899999999 99999999853 33 332224333 5678 99999999999999998888877766
Q ss_pred CCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEec
Q 005342 584 GHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 657 (701)
Q Consensus 584 ~h~~~V~~v~~spd-----g~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~D 657 (701)
-..++.+++++|| .+.+++||.-| +.++...- |.+ ..+. +..+. ++|.++.|. |.++|-.+|
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v~-l~~~e----G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSVV-LSEGE----GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---ccee-eecCc----cceEEEEec--CcEEEEecC
Confidence 3468999999998 46889999988 77776543 111 1111 11222 899999997 788888888
Q ss_pred CeEEEEECCCCceeeeeee
Q 005342 658 GQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 658 g~I~iwd~~~g~~~~~l~~ 676 (701)
-.|+|||+.+++.+..++.
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred CCcEEEeccccceeeccCC
Confidence 8899999999998887776
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=6.2e-07 Score=97.45 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=137.4
Q ss_pred CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (701)
Q Consensus 438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-- 515 (701)
..+....+|++|+.+.++|+.|+..|.|+++++ .+|..... . ..|..+|+.+.-+
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv---------------------~sG~~e~s-~-ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNV---------------------SSGSMEES-V-NCHQSAVTLVEPSVD 1154 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEc---------------------cCcccccc-c-cccccccccccccCC
Confidence 356788999999999999999999999999976 34432211 1 4789999999888
Q ss_pred CCEEEEEe--C-CeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecC---CC
Q 005342 516 GSHLFSAS--G-GKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKG---HQ 586 (701)
Q Consensus 516 ~~~l~s~s--d-g~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~---h~ 586 (701)
|..+++.+ . .-..+|++.. +...++|.+ -.++.|+... +-+.|+......+||+.++....+ +.+ ..
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 77766655 3 3678999854 556666652 3578888777 667777778899999999987766 332 12
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
-.-+...|||+..++. .|| .+||++..+. ++.+..- ..-..-.|+|.|.-++..+ .|||++
T Consensus 1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-----Ih~FD~f-----t~~~~G~FHP~g~eVIINS----EIwD~R 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-----IHRFDQF-----TDYGGGGFHPSGNEVIINS----EIWDMR 1291 (1516)
T ss_pred hhccccccCCCcceEe---eCc--eeeeeccHHH-----Hhhhhhh-----eecccccccCCCceEEeec----hhhhhH
Confidence 2347789999988776 344 5899998432 2212111 1112335999999888743 489999
Q ss_pred CCceeeeeee
Q 005342 667 TLNHTSQVLL 676 (701)
Q Consensus 667 ~g~~~~~l~~ 676 (701)
|.+.+++.+.
T Consensus 1292 TF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1292 TFKLLHSVPS 1301 (1516)
T ss_pred HHHHHhcCcc
Confidence 9999988886
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=0.00037 Score=74.24 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=87.9
Q ss_pred eeEEeeCCCCe--EEeecccCCCCCCeEEEEec---CCEEEEE----e-CCe----EEEEeCCCCcE----EEEecCCCC
Q 005342 485 ESQLYQPSSKL--VMTNDIAADPKDSISCFALR---GSHLFSA----S-GGK----ISIFSLETFQT----LATFANPPP 546 (701)
Q Consensus 485 ~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s---~~~l~s~----s-dg~----I~iwd~~~~~~----~~~~~~~~~ 546 (701)
++.++....++ ++.. +. .+....++.|| +..+.+. + +|. -.+|+...++. +.++ ..+.
T Consensus 185 Nl~L~~~~~~klEvL~y-ir--TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s 260 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSY-IR--TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPS 260 (545)
T ss_pred cEEEEEecCCcEEEEEE-EE--ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCC
Confidence 45566655554 2221 11 23344677787 4555443 2 332 35677655432 2233 3677
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
.+.+++++|+. .++.|+.||.|.+||...+.... ..+.-.++.++|+|+|.++++|++.|.+.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 89999999999 99999999999999987663332 224456789999999999999999999999998754
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=6.2e-05 Score=82.08 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=101.9
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-----CCEEEEEECCCcEEEEecCCCCcc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----GDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-----g~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
.+|.+++||+.||+|.|-.+.+ +..+....+ ..++.+++++|| .+.+++||..| +.++.-.
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~---~~~~~~~df-----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~----- 146 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFT---DDEITQYDF-----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN----- 146 (846)
T ss_pred cCCceEEEecCCCcEEEeeccC---CccceeEec-----CCcceeEEeccchhhhhhhheeecCcce-EEEehhh-----
Confidence 3699999999999999998873 333344333 578999999998 56789999988 7776320
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCe------EE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIA------TY 550 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i------~~ 550 (701)
|=-.....+ + ....++|.++.|.|+++|-++|-.|++||+.+++.+..++.....+ ..
T Consensus 147 ------------wlgnk~~v~---l-~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpph 210 (846)
T KOG2066|consen 147 ------------WLGNKDSVV---L-SEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPH 210 (846)
T ss_pred ------------hhcCcccee---e-ecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCc
Confidence 100111111 1 2457899999999999999998779999999998887776443332 56
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCC
Q 005342 551 FILLPQDLFAFGFDDSSILVHCPC 574 (701)
Q Consensus 551 l~~spdg~l~~gs~dg~I~iwd~~ 574 (701)
+.|.++..++.|..| +|+|..++
T Consensus 211 l~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 211 LHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred eEecCCCeEEEecCC-eEEEEEEe
Confidence 778777767777655 67777766
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.23 E-value=0.00066 Score=68.77 Aligned_cols=244 Identities=13% Similarity=0.105 Sum_probs=136.9
Q ss_pred EEEEcCCCCeEEEEc----------CCCcEEEEeccccCCCCceeEeecCCC-C--CCCCEEEEEEecCCCEEEEEECCC
Q 005342 397 ESTSLPDADSAVCAK----------SLEKSVNLKLQLINEPSECRTLLLPDN-S--FGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 397 ~l~~spdg~~l~s~s----------~d~~v~iw~~~~~~~~~~~~~l~~~~~-~--~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
.+..+|||+.+++++ ...-|.+||..+....+ .+.+|.. . ........++|.||++++
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~---EI~iP~k~R~~~~~~~~~~~ls~dgk~~~------ 110 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG---EIEIPPKPRAQVVPYKNMFALSADGKFLY------ 110 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE---EEEETTS-B--BS--GGGEEE-TTSSEEE------
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc---eEecCCcchheecccccceEEccCCcEEE------
Confidence 467899999988753 34568899998533222 2333332 0 011122345666666644
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEE-eCCeEEEEeCC-CCcEEEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-SGGKISIFSLE-TFQTLAT 540 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~-sdg~I~iwd~~-~~~~~~~ 540 (701)
+||+. .+-++.+.|...++++.. +. ...+..+--+ +..+.+- +||.+.-..+. .|+..++
T Consensus 111 ---V~N~T----------Pa~SVtVVDl~~~kvv~e-i~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 111 ---VQNFT----------PATSVTVVDLAAKKVVGE-ID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp ---EEEES----------SSEEEEEEETTTTEEEEE-EE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred ---EEccC----------CCCeEEEEECCCCceeee-ec---CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 44441 122345557787776642 21 1223233233 3444444 49999888876 4554332
Q ss_pred ----ecCCCCCe-EEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecC----------CCCCeEEEEEecCCCEEE
Q 005342 541 ----FANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG----------HQNRITCLAYSLSLNVLV 602 (701)
Q Consensus 541 ----~~~~~~~i-~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~----------h~~~V~~v~~spdg~~l~ 602 (701)
|.....++ ..-+++..+ .++.-+.+|.|+-.|+..... ...+.- -.+.-.-+++++..+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 22222332 344555555 566678999999988876542 122211 112345578888665554
Q ss_pred EEe---CCC-------eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEE-E-ecCeEEEEECCCCc
Q 005342 603 SSG---ADA-------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-I-HEGQIDVYEAPTLN 669 (701)
Q Consensus 603 s~s---~D~-------~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~s-g-~Dg~I~iwd~~~g~ 669 (701)
.-- .++ .|-++|+++++.+....+. .++.+|+.+.|.+ +|++ . .++.+.+||..+|+
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 421 122 5888899998876655555 6678999998864 5654 4 58899999999999
Q ss_pred eeeeeee
Q 005342 670 HTSQVLL 676 (701)
Q Consensus 670 ~~~~l~~ 676 (701)
.+++++.
T Consensus 324 ~~~~~~~ 330 (342)
T PF06433_consen 324 LVRSIEQ 330 (342)
T ss_dssp EEEEE--
T ss_pred EEeehhc
Confidence 9999887
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.22 E-value=0.0019 Score=64.68 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=131.2
Q ss_pred EEEEcC-CCCeEEEEcCCCc-EEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECC-----CcEEEE
Q 005342 397 ESTSLP-DADSAVCAKSLEK-SVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHKLW 468 (701)
Q Consensus 397 ~l~~sp-dg~~l~s~s~d~~-v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~i~vw 468 (701)
.++.+| .+..++.+-.-|+ ..+||.. +++..... .+.. ..---.-.||+||++|++.-.| |.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~----~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCR----TGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcC----CCceeeEEcCCCC--CEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 577888 5566667766665 5678887 55444322 1111 1112235799999999887553 889999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-------------------CCeE
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------------GGKI 527 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-------------------dg~I 527 (701)
|....-. .+ .++. .+.-....+.+. |+.|+++. +..+
T Consensus 83 d~~~~~~--------------------ri-~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 83 DAARGYR--------------------RI-GEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred ECcCCcE--------------------EE-eEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 7742111 11 1111 122222233344 43444432 2346
Q ss_pred EEEeCCCCcEEEEec----CCCCCeEEEEEcCCC-eEEEEeCCC-------cEEEEeCCCCceEEeec-------CCCCC
Q 005342 528 SIFSLETFQTLATFA----NPPPIATYFILLPQD-LFAFGFDDS-------SILVHCPCTKKTKAKLK-------GHQNR 588 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~----~~~~~i~~l~~spdg-~l~~gs~dg-------~I~iwd~~~~~~~~~l~-------~h~~~ 588 (701)
...|..+|+.+.... -|...|..++++++| .++..-..| -+.+++... .+..+. .-.+.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCc
Confidence 677778888776633 256789999999999 433333333 244554322 222222 23467
Q ss_pred eEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEE
Q 005342 589 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 662 (701)
Q Consensus 589 V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~i 662 (701)
+-+|++++++.+++ |+=.-+.+.+||..+|+.+....+ ..+..++-.+++ +++++..|.+..
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----------~D~cGva~~~~~-f~~ssG~G~~~~ 281 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----------PDACGVAPTDDG-FLVSSGQGQLIR 281 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----------CceeeeeecCCc-eEEeCCCccEEE
Confidence 89999999998775 555678999999999874432222 345677777776 677765565433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.18 E-value=5.5e-06 Score=56.34 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (701)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd 572 (701)
++++.++.+|...|++++|+|++ ++++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=7.8e-05 Score=81.30 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
+.+++|+|..-.|+.|-.-|.+.+|..+ +.+...+. ..|+.+|..+.|||+|..++++..-|.+.+|..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~----~~e~htv~---~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTN----TTETHTVV---ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecC----Cceeeeec---cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 5679999999999999999999999987 44444422 248899999999999999999999999999966
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00017 Score=72.61 Aligned_cols=240 Identities=12% Similarity=0.055 Sum_probs=132.2
Q ss_pred cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~ 464 (701)
.+.+|.. |..++|||..+ ++..++.+..|+|.|++ +..+.. ....+ ..+++++|.-|.. +|.+|-.+|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle----t~~~vs---sy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE----TSCVVS---SYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecc----cceeee---heecc-CCceeeeeccCCcceeEEeccCce
Confidence 3557777 99999999888 68889999999999998 443332 22223 8899999998765 5566666999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEE-------Eec-CCEEEEEeCCeEEEEeCCC--
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-------ALR-GSHLFSASGGKISIFSLET-- 534 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l-------~~s-~~~l~s~sdg~I~iwd~~~-- 534 (701)
|.+||++..+-+.....+. . ...+|..+ .|. |..++... -....|++.-
T Consensus 260 VlvyD~R~~~~~~~e~~a~-------~-------------t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~ 318 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVAN-------V-------------TINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSA 318 (463)
T ss_pred EEEEEccCCCchHhhhhhh-------h-------------ccCcceeecccCccccccccceEEeee-hhhhhhhhhccc
Confidence 9999985543211111110 0 11122221 233 55554444 1244555432
Q ss_pred CcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCC---c---EE-EEeCCCCceEEeec-CCCC-------CeEEEEEec
Q 005342 535 FQTLATFA-NPPPIATYFILLPQD--LFAFGFDDS---S---IL-VHCPCTKKTKAKLK-GHQN-------RITCLAYSL 596 (701)
Q Consensus 535 ~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg---~---I~-iwd~~~~~~~~~l~-~h~~-------~V~~v~~sp 596 (701)
+......+ +..+...++...+.. .+++.-.+. + |- --|-.+|..+..-+ +|.+ .-..+.-.+
T Consensus 319 ~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~ 398 (463)
T KOG1645|consen 319 ECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVE 398 (463)
T ss_pred cCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccc
Confidence 12222121 124455566666654 444332221 0 10 11222333332111 1200 011122235
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC--CCEEEEEecCeEEEEECC
Q 005342 597 SLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 597 dg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd--g~~l~sg~Dg~I~iwd~~ 666 (701)
+.++++ ++++.+.+.+||..+++.....++. .+|..+..... +.+|++-.|..++||..+
T Consensus 399 ~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~----------epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 399 DNNYIVVVGDSTNELILQDPHSFEVVQTLALS----------EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cccEEEEecCCcceeEEeccchhheeeecccC----------cceeecceeecCCcchhhheecceEEEEecC
Confidence 666655 4556778999999998755444443 66777665442 456776788889998764
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=7.7e-05 Score=82.24 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=128.6
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~ 482 (701)
++..++-|+-...+..+|+. +.+..+.. .-..+.|.-+. .+++++.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~----~~~e~r~~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~Lr-------------- 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLN----TEKETRTT---NVSASGVTIMR--YNNRNLFCGDTRGTVFLR-------------- 202 (1118)
T ss_pred CCcceeecchhhheeeeecc----cceeeeee---eccCCceEEEE--ecCcEEEeecccceEEee--------------
Confidence 44567777777788888887 44333311 11233455444 468889999999999998
Q ss_pred ceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-C---------CeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
|+.+.+.+.. + ..|.+.|.++...|+.|++++ . ..|+|||++..+.+..+.-+.++ .-+.
T Consensus 203 -------D~~s~~~iht-~-~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 203 -------DPNSFETIHT-F-DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred -------cCCcCceeee-e-eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 4455554433 3 478899998888888888876 3 35899999988877766544443 5678
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCC---C-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 553 LLPQD--LFAFGFDDSSILVHCPCT---K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 553 ~spdg--~l~~gs~dg~I~iwd~~~---~-~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
|+|.- .+++.+..|...+-|..+ . .-+..+....+.+..+++|++|+.+|.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 89987 899999999999998332 2 112222233456999999999999999999999999973
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.06 E-value=0.0011 Score=71.60 Aligned_cols=231 Identities=10% Similarity=-0.002 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 482 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~ 482 (701)
+..++.++.++.+.-+|.. +|+ .++... ...+.+--.- .+..++.++.+|.+.-+|..+++
T Consensus 120 ~~~v~v~~~~g~l~ald~~----tG~~~W~~~~-----~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~-------- 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE----DGEVAWQTKV-----AGEALSRPVV-SDGLVLVHTSNGMLQALNESDGA-------- 181 (394)
T ss_pred CCEEEEEcCCCEEEEEECC----CCCCcccccC-----CCceecCCEE-ECCEEEEECCCCEEEEEEccCCC--------
Confidence 4567777888999999987 443 343222 1122111111 13456677778888877653332
Q ss_pred ceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC-------CeEEEEEc
Q 005342 483 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP-------IATYFILL 554 (701)
Q Consensus 483 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~s 554 (701)
.+|.......... . .+. .+....+..++.++ +|.+..+|..+|+.+........ ....+..+
T Consensus 182 ----~~W~~~~~~~~~~-~-~~~----~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 182 ----VKWTVNLDVPSLT-L-RGE----SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred ----EeeeecCCCCccc-c-cCC----CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 1222211100000 0 000 11122333455555 89999999999987766532110 01111122
Q ss_pred C---CCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC
Q 005342 555 P---QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 631 (701)
Q Consensus 555 p---dg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~ 631 (701)
| ++.+++++.+|.++.+|..+|+.+-+..- +....+. .++..++.++.+|.++.+|..+|+.+-.... .
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~-- 323 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--L-- 323 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc--c--
Confidence 2 33666777899999999999987654331 1112222 2456777788999999999999864321111 1
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
.. ....+.... ++..++.+.||.+...|..+|+.+....
T Consensus 324 ~~----~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 324 LH----RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CC----CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 11 111122221 4444444589999999999999877664
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.002 Score=61.49 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=86.5
Q ss_pred eCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC
Q 005342 490 QPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS 566 (701)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg 566 (701)
|+.+|.+.-. ..-..++.+-+.- |++++.|. .|.+++.+.++|...+.+.....--......+++ .|.+|+.|+
T Consensus 39 d~~sG~~~We---~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~ 115 (354)
T KOG4649|consen 39 DPQSGNLIWE---AILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDG 115 (354)
T ss_pred cCCCCcEEee---hhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCC
Confidence 6677776532 2235567776666 99999999 9999999999999888886443333455678888 999999999
Q ss_pred cEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC
Q 005342 567 SILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~ 617 (701)
+.+..|.++...+.+.+...+...+-+..| ++. |..+...|.+---..+.
T Consensus 116 ~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 116 NFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNP 166 (354)
T ss_pred cEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCC
Confidence 999999999988887764433334445666 444 33344445544444444
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.0013 Score=70.93 Aligned_cols=225 Identities=8% Similarity=-0.030 Sum_probs=123.2
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCC--C----CCCEE-EEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNS--F----GGRVV-RLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~--~----~~~v~-~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+..++.++.++.+.-+|.. +|+ .++..+.... . ...+. .+. -++..++.++.+|.+.-+|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~----- 137 (394)
T PRK11138 69 YNKVYAADRAGLVKALDAD----TGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNA----- 137 (394)
T ss_pred CCEEEEECCCCeEEEEECC----CCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEEC-----
Confidence 4466666667777777776 333 3332221100 0 00000 011 13456777788888887754
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEE-EEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-----
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----- 548 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i----- 548 (701)
++|+.+-+ ......+.+ ..+.+..++.++ ++.+.-+|.++|+.+..+.......
T Consensus 138 ----------------~tG~~~W~---~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 138 ----------------EDGEVAWQ---TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred ----------------CCCCCccc---ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 44443211 111112211 222355666666 8999999999999988876331111
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC--C-----CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCe
Q 005342 549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--N-----RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~--~-----~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
.+.... ++.++.++.+|.++.+|..+|+.+-...... + ....+.-+| .+..++.++.+|.++.+|..+|+
T Consensus 199 ~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 199 SAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 111121 2356677889999999999988765433110 0 011112233 34567777889999999999997
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~ 672 (701)
..-...+. . ...+.. ++..++. +.+|.+..+|..+|+.+-
T Consensus 278 ~~W~~~~~----------~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 278 IVWKREYG----------S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred EEEeecCC----------C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 44322211 1 111111 2334444 578888888888887654
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0021 Score=71.10 Aligned_cols=195 Identities=12% Similarity=0.144 Sum_probs=120.3
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCC-EEEEEEecCCCEEEEEECCC-----cEEEEecCC
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTA-----THKLWKWQS 472 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~-v~~l~~spdg~~l~s~s~dg-----~i~vwd~~~ 472 (701)
+|++.+..+|.|+.+|.|.+.+-. -+... .+..+... |..+....+..+|++.+.|+ .+++|+++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-----~~~~~---~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-----FQLIR---GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-----ceeee---hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 488999999999999998887753 11101 22224444 44444444446788877764 488998854
Q ss_pred CCccccccccceeeEEeeCCC-CeEE--eecc--c-CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---CCcEEEE
Q 005342 473 NKQSLEEENVNMESQLYQPSS-KLVM--TNDI--A-ADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLAT 540 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~-~~~~--~~~~--~-~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~---~~~~~~~ 540 (701)
... .+ ..++ ...+ . +....++.+++++ -+.+|+|- +|.|..+.-. .......
T Consensus 102 ~~~----------------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 102 VDK----------------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred cCC----------------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 321 11 1222 0001 0 1235688899999 56677777 8999888521 1111112
Q ss_pred e-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 541 F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 541 ~-~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+ .....+|+.+++..++ .++....-..|.+|.+....+ ...+..|...++|..+++....+++++ +..+++|+...
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 2 2346789999999999 423333445788888874442 445676777899999988555344333 34799999886
Q ss_pred C
Q 005342 618 W 618 (701)
Q Consensus 618 g 618 (701)
.
T Consensus 245 ~ 245 (933)
T KOG2114|consen 245 R 245 (933)
T ss_pred c
Confidence 3
No 327
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.00012 Score=79.22 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=115.1
Q ss_pred CeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcC----------C-C--eEEEEeCCCcEEEEeC
Q 005342 508 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP----------Q-D--LFAFGFDDSSILVHCP 573 (701)
Q Consensus 508 ~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp----------d-g--~l~~gs~dg~I~iwd~ 573 (701)
.-.++.|+ +..++.|+...|.+.|..+.+.++.+..|+..|+.+.|.| . . .||++...|.|.+||.
T Consensus 17 N~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred cccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 35567888 8899999999999999999999999999999999999976 2 2 6888889999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEec---CC-CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-C
Q 005342 574 CTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-D 648 (701)
Q Consensus 574 ~~~~~~~~l~~h~~~V~~v~~sp---dg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-d 648 (701)
..+..+..+..|..++..++|-| +. .+|+.-....++.+|+..+|++.-. ...+| ....++.+.| |
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-----~~ys~----~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-----YDYSH----EILSCFRVDPFD 167 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-----cccCC----cceeeeeeCCCC
Confidence 99999999998999999999987 34 4677777788999999999975432 22233 4556677777 3
Q ss_pred CCEEEE-EecCeEEEEE
Q 005342 649 QIHLLS-IHEGQIDVYE 664 (701)
Q Consensus 649 g~~l~s-g~Dg~I~iwd 664 (701)
.+++.. |..|.+-+-+
T Consensus 168 ~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred cceEEEEccCceEEEEe
Confidence 444444 4455444433
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00099 Score=67.32 Aligned_cols=73 Identities=21% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 005342 503 ADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (701)
Q Consensus 503 ~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~ 576 (701)
..+...|.++++| ...+..++ +..|.+.|+++...+..+..+ ..+++++|.-|. +|.+|..+|.|++||++..
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 5678899999999 33677888 999999999999999988866 789999999998 9999999999999999853
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0017 Score=69.89 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe-cCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK-WQSN 473 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd-~~~~ 473 (701)
...+.++|+|++++.++. |.-.++... ..+-.. .+.....+|.+.++ +++-..++.|.++. +
T Consensus 35 p~~ls~npngr~v~V~g~-geY~iyt~~----~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~--- 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD-GEYEIYTAL----AWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF--- 97 (443)
T ss_dssp -SEEEE-TTSSEEEEEET-TEEEEEETT----TTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT---
T ss_pred CeeEEECCCCCEEEEEcC-CEEEEEEcc----CCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcC---
Confidence 668999999999999555 777777643 111111 24455678988665 67777788899962 2
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 553 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~ 553 (701)
+-.....+. ....+..+- .|..|...+++.|.+||+++++.++.+... +|..+.|
T Consensus 98 ----------------~~~~~k~i~------~~~~~~~If-~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 98 ----------------KNEVVKSIK------LPFSVEKIF-GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp ----------------EE-TT-----------SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred ----------------ccccceEEc------CCcccceEE-cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 111101111 011122221 177788888789999999999999999743 3899999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCC-----------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 554 LPQD-LFAFGFDDSSILVHCPCTK-----------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 554 spdg-~l~~gs~dg~I~iwd~~~~-----------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
+++| +++..+.+ .+++++.... .....+......|.+.+|..| .++..+.. .++- +..|+.
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~- 225 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET- 225 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-
Confidence 9999 88887755 6777664332 022323222457888899765 44444444 6665 455542
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
..+..++ .++.=+...|..+.+... .|+.+..+.+
T Consensus 226 --~~i~~ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 226 --GIIAHLD-------KPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp --EEEEE-S-------S--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred --ceEEEcC-------CceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 2333121 555666666655555554 5666666654
No 330
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.94 E-value=1.3e-05 Score=52.51 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIF 43 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~ 43 (701)
++++.++|+|||...||.+|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999975
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.011 Score=56.73 Aligned_cols=225 Identities=14% Similarity=0.059 Sum_probs=110.3
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
....+++..+..|+.|++.+.-|.. +..| ++.+. ..+.-.+-+..|-...|.++...|.+.--+....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~----~~~cVykskc----gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~--- 167 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKC----GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY--- 167 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEeccc----ccceEEeccc----CCceeccceecCCCceEEEEeccceEEEEccCCC---
Confidence 4567899999999999999999987 3333 22111 1122223334452223444455554443322110
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-EEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-TYFIL 553 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i-~~l~~ 553 (701)
....+.. ..-.++|.+--.- +..+..+. ||.+.-+| ..|+.++.+. ..++| ..-+-
T Consensus 168 ---------------~~~~~w~----~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~ 226 (354)
T KOG4649|consen 168 ---------------SSTEFWA----ATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCE 226 (354)
T ss_pred ---------------Ccceehh----hhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceeccccc
Confidence 0001110 0112233222111 55555566 88888888 5777777664 23333 11122
Q ss_pred c-CCC-eEEEEeCCCcE--------EEEeCCCCceEEeecCCCCCeEEEEEe-cC---CCEEEEEeCCCeEEEEEC----
Q 005342 554 L-PQD-LFAFGFDDSSI--------LVHCPCTKKTKAKLKGHQNRITCLAYS-LS---LNVLVSSGADAQLCVWDA---- 615 (701)
Q Consensus 554 s-pdg-~l~~gs~dg~I--------~iwd~~~~~~~~~l~~h~~~V~~v~~s-pd---g~~l~s~s~D~~I~vwd~---- 615 (701)
+ |.- .|..+.++..+ .+|..++|...+.+-. +-...+++ |. .++|..++.||++.|--.
T Consensus 227 s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl 303 (354)
T KOG4649|consen 227 SRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSL 303 (354)
T ss_pred CCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCCcEEEEEecccc
Confidence 2 333 44444444333 3455555533332211 10112222 21 346777889999988833
Q ss_pred -----CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEEecCeEEEEECCCC
Q 005342 616 -----VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTL 668 (701)
Q Consensus 616 -----~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg~Dg~I~iwd~~~g 668 (701)
..|+......+. +. +. +--|| +|++++.+.|..++-||+.++
T Consensus 304 ~~~~s~~g~lq~~~~~e-l~-------~e---IFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 304 AEISSNGGELQNLEAIE-LS-------NE---IFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cccccCCCccceEEEee-cC-------cc---cccCCeEEccEEEEEEccCeEEEEecccc
Confidence 333322222221 11 11 11123 477666679999999999875
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00088 Score=73.93 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=124.6
Q ss_pred EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC-eEEEEec-C-CEEEEEe-
Q 005342 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR-G-SHLFSAS- 523 (701)
Q Consensus 448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-v~~l~~s-~-~~l~s~s- 523 (701)
+|++.+..++.|+.+|.|.+.+-. -+... .+ ..+... |..+... + ++|++.+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----------------------~~~~~-~f-qa~~~siv~~L~~~~~~~~L~sv~E 85 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----------------------FQLIR-GF-QAYEQSIVQFLYILNKQNFLFSVGE 85 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----------------------ceeee-hh-eecchhhhhHhhcccCceEEEEEee
Confidence 367888899999999999888431 11111 12 122223 4444333 3 4677666
Q ss_pred C-C----eEEEEeCCCC------cEE--EEecC-----CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---C-CceEE
Q 005342 524 G-G----KISIFSLETF------QTL--ATFAN-----PPPIATYFILLPQD-LFAFGFDDSSILVHCPC---T-KKTKA 580 (701)
Q Consensus 524 d-g----~I~iwd~~~~------~~~--~~~~~-----~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~-~~~~~ 580 (701)
| + .+++||++.. .++ +.+.+ .+.++++++++.+- .+|+|..+|.|..+.-+ . +....
T Consensus 86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 4 3 6899998643 233 12222 25678999999998 99999999999988532 1 11111
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeE
Q 005342 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 660 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I 660 (701)
-......+|+.+++..+++.++-+..-..|.+|.+.. +.. .+. +...|. .+++|.++++....++++.+.-+
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p---~~~-~ld~~G---~~lnCss~~~~t~qfIca~~e~l 237 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTP---SLK-VLDNNG---ISLNCSSFSDGTYQFICAGSEFL 237 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCc---cee-eeccCC---ccceeeecCCCCccEEEecCceE
Confidence 1112346999999999988644444456899999984 311 112 222443 78999999987776777777789
Q ss_pred EEEECCCCceeeeee
Q 005342 661 DVYEAPTLNHTSQVL 675 (701)
Q Consensus 661 ~iwd~~~g~~~~~l~ 675 (701)
.+|+....+.--+++
T Consensus 238 ~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 238 YFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEcCCCcceeeeec
Confidence 999986544444444
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.00057 Score=74.64 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=72.2
Q ss_pred CCEEEEEeCCeEEEEeCCC-----CcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce----------
Q 005342 516 GSHLFSASGGKISIFSLET-----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT---------- 578 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~-----~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~---------- 578 (701)
|++... .++.|.+.|..+ .+.+..+. -......+.++||| .+++|..+.++.++|+.+.+.
T Consensus 288 GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 288 GKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 554444 467899999988 34555554 45566899999999 566667789999999987542
Q ss_pred --EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 579 --KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 579 --~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+.+..-..++ ...+|.++|+...|-.-|..|..||+..
T Consensus 366 ~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333322333 4568999999888888999999999886
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.86 E-value=0.00032 Score=77.58 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=108.8
Q ss_pred CeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCc
Q 005342 508 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKK 577 (701)
Q Consensus 508 ~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~d---------g~I~iwd~~~~~ 577 (701)
.|.-+..+++++.+|. .|+|.+-|.++.+.++++..|.+.|..+....+ .+++++.. .-|.+||++..+
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhh
Confidence 3655655588888888 899999999999999999999999877655433 56655543 358999999887
Q ss_pred eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 578 TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 578 ~~~~l~~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
.+..+.-+.++ .-+.|+|. ...++.+|..|...+-|..+. ++.. .... + .. ....+..+.+|++|..++.|
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~-v--~p--~~s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKM-V--NP--NGSGISAFDISSNGDALAFG 330 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc-ceeE-E--cc--CCCcceeEEecCCCceEEEe
Confidence 77666656554 55688884 447788888899999884432 1100 1111 1 11 11569999999999999999
Q ss_pred -ecCeEEEEE
Q 005342 656 -HEGQIDVYE 664 (701)
Q Consensus 656 -~Dg~I~iwd 664 (701)
.+|.|.+|-
T Consensus 331 d~~g~v~~wa 340 (1118)
T KOG1275|consen 331 DHEGHVNLWA 340 (1118)
T ss_pred cccCcEeeec
Confidence 799999997
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.0012 Score=75.64 Aligned_cols=196 Identities=11% Similarity=0.105 Sum_probs=123.8
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
...|.++.|..++..++.+..+|.|.+.|. ++.... +.+.-...|.+++|| ++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~---------------------et~~~e---ivg~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDP---------------------ETLELE---IVGNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcc---------------------ccccee---eeeeccCceEEEeecCCCcE
Confidence 368999999999999999999999999854 444322 112345678888888 667
Q ss_pred EEEEe-CCeEEEEeCCCCcE------------------------EEEecCC---------------------CCCeEEEE
Q 005342 519 LFSAS-GGKISIFSLETFQT------------------------LATFANP---------------------PPIATYFI 552 (701)
Q Consensus 519 l~s~s-dg~I~iwd~~~~~~------------------------~~~~~~~---------------------~~~i~~l~ 552 (701)
++..+ ++++.+-+- +..+ ...|.|. .+.=++|+
T Consensus 124 l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence 66666 455544321 1111 0112111 11125699
Q ss_pred EcCCC-eEEEE-----eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE---eCCCeEEEEECCCCeeeee
Q 005342 553 LLPQD-LFAFG-----FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 553 ~spdg-~l~~g-----s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~---s~D~~I~vwd~~~g~~~~~ 623 (701)
|-.|| ++|+. .....|++||.+ |.+-..-....+--.+++|-|.|..+++- +.|+.|.++....-+ ...
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccc
Confidence 99999 88873 333689999965 54332222223334678999999999875 346689999866521 111
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---Ee-cCeEEEEECCCC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---IH-EGQIDVYEAPTL 668 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g~-Dg~I~iwd~~~g 668 (701)
..+. .+... ..|..++|+.++..||+ .. ...|++|-+.+-
T Consensus 281 f~l~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 281 FVLP-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccC-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2222 22111 44999999999999997 33 444999987654
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.81 E-value=0.0041 Score=63.12 Aligned_cols=262 Identities=14% Similarity=0.087 Sum_probs=143.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----------------CCCCeEEEEeccCCccccccccccCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----------------ANNETISLKDFPTVSNLRYASSILTDKPN 369 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~ 369 (701)
+++.+.|.++++.+-.+...-. . .+..||| ...-.|.+||.++-.....+ .+..|
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI--~iP~k-- 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--G--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI--EIPPK-- 88 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--E--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE--EETTS--
T ss_pred ceEEEEECCCCcEEEEeecccC--C--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE--ecCCc--
Confidence 5667788888888877764322 2 4456676 33456889999887654432 11111
Q ss_pred CCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEE--cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEE
Q 005342 370 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 447 (701)
Q Consensus 370 ~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~--s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l 447 (701)
+.. .+ -...+..+++.||+++... +.-.+|.+-|+. .++... .+ ....+..+
T Consensus 89 ---~R~-----------~~---~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~----~~kvv~-ei----~~PGC~~i 142 (342)
T PF06433_consen 89 ---PRA-----------QV---VPYKNMFALSADGKFLYVQNFTPATSVTVVDLA----AKKVVG-EI----DTPGCWLI 142 (342)
T ss_dssp ----B-------------B---S--GGGEEE-TTSSEEEEEEESSSEEEEEEETT----TTEEEE-EE----EGTSEEEE
T ss_pred ---chh-----------ee---cccccceEEccCCcEEEEEccCCCCeEEEEECC----CCceee-ee----cCCCEEEE
Confidence 000 00 0013346788999987765 445678888887 444322 11 11233333
Q ss_pred EEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342 448 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (701)
Q Consensus 448 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d 524 (701)
--+++ +.+.+.|.||.+....+... |+.. ...-.+|++... ..+..-+++ +..++..+ +
T Consensus 143 yP~~~-~~F~~lC~DGsl~~v~Ld~~----Gk~~-~~~t~~F~~~~d------------p~f~~~~~~~~~~~~~F~Sy~ 204 (342)
T PF06433_consen 143 YPSGN-RGFSMLCGDGSLLTVTLDAD----GKEA-QKSTKVFDPDDD------------PLFEHPAYSRDGGRLYFVSYE 204 (342)
T ss_dssp EEEET-TEEEEEETTSCEEEEEETST----SSEE-EEEEEESSTTTS-------------B-S--EEETTTTEEEEEBTT
T ss_pred EecCC-CceEEEecCCceEEEEECCC----CCEe-EeeccccCCCCc------------ccccccceECCCCeEEEEecC
Confidence 22332 45889999999998877532 2211 111122332221 112222333 44444455 8
Q ss_pred CeEEEEeCCCCcE--EEEecCC----------CCCeEEEEEcCCC-eEEEEeC---CC-------cEEEEeCCCCceEEe
Q 005342 525 GKISIFSLETFQT--LATFANP----------PPIATYFILLPQD-LFAFGFD---DS-------SILVHCPCTKKTKAK 581 (701)
Q Consensus 525 g~I~iwd~~~~~~--~~~~~~~----------~~~i~~l~~spdg-~l~~gs~---dg-------~I~iwd~~~~~~~~~ 581 (701)
|.|+-.|+..... ...+... .+.-.-+++++.. .+.+-.. ++ .|.++|+.+++.+.+
T Consensus 205 G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 205 GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 8888888754432 1122100 1233557787655 3333221 22 699999999999998
Q ss_pred ecCCCCCeEEEEEecCCC-EEEEE-eCCCeEEEEECCCCeee
Q 005342 582 LKGHQNRITCLAYSLSLN-VLVSS-GADAQLCVWDAVGWKKL 621 (701)
Q Consensus 582 l~~h~~~V~~v~~spdg~-~l~s~-s~D~~I~vwd~~~g~~~ 621 (701)
+.. ..++.+++.+.|.+ +|++. ..++.+.+||..+|+.+
T Consensus 285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 873 34588999999765 66654 45899999999999644
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0032 Score=68.27 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|.--++...+++++.|+.-|.+++++-. ++..+.+ +..+..+.+..+..|++..++|+|+..|.|.++-++...
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~----~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRH----TGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecC----chhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 7777888999999999999999999987 5654442 333445566677788888888888889999999764421
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCC
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPI 547 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~ 547 (701)
+.....++. ....|...|++++|+ +..+++|. .|+|..-.+.+.. ..+.+....+.
T Consensus 110 ----------------p~~~~~~t~-~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 110 ----------------PRDLDYVTP-CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred ----------------CCcceeecc-ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 122222221 334578899999999 88899998 6999888776621 22333334566
Q ss_pred eEEEEEcC
Q 005342 548 ATYFILLP 555 (701)
Q Consensus 548 i~~l~~sp 555 (701)
|-.+....
T Consensus 173 IVQlD~~q 180 (726)
T KOG3621|consen 173 IVQLDYLQ 180 (726)
T ss_pred eEEeeccc
Confidence 66666543
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.75 E-value=0.047 Score=55.57 Aligned_cols=239 Identities=13% Similarity=0.101 Sum_probs=136.6
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
..++.|+.|..+| +.+++... ......+. +...|..+...|+-+.+++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~---~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD---PSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC---CccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 3578899998888 88888831 22222211 234499999999888777765 49999998754332110000
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEE---ec--CCEEEEEeCCeEEEEeCCCC-----cEEEEecCCCCCeEEE
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIATYF 551 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~---~s--~~~l~s~sdg~I~iwd~~~~-----~~~~~~~~~~~~i~~l 551 (701)
.. ...+......+ .....+..++ -. +..++++....|.+|..... +..+.+. ....+.++
T Consensus 75 ~~-------~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 75 LA-------FPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred cc-------ccccccccccc--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 00 00000000001 1233455555 11 44556555778888887542 4556665 45778899
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCC------------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 552 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH------------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 552 ~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h------------~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
+|.++ .++.|..+ ...+.|+.++.....+... ..++..+.. +++.+|++- |..-...|. .|+
T Consensus 145 ~~~~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~ 218 (275)
T PF00780_consen 145 AFLGN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGE 218 (275)
T ss_pred EEeCC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCC
Confidence 99955 56666654 4788899877654433211 123333333 345666643 333333344 343
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+.....+. +. ....++++. ..+|++-.++.|.||++.+|+++++++.
T Consensus 219 ~~r~~~i~-W~-------~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 219 PSRKSTIQ-WS-------SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cCcccEEE-cC-------CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 32222333 22 334566663 4688776667799999999999999886
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0004 Score=74.47 Aligned_cols=158 Identities=19% Similarity=0.116 Sum_probs=100.6
Q ss_pred CCeEEEEec--CCEEEEEe----C-CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCC--cEEEEeCCC
Q 005342 507 DSISCFALR--GSHLFSAS----G-GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS--SILVHCPCT 575 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~s----d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg--~I~iwd~~~ 575 (701)
..+..-+|+ +..++..+ . ..+.++|+++++...... ....-...+|+||| .+++...|| .|+++|+.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 345556666 55544433 2 369999999887555443 33344567899999 556666677 688889887
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
+...+ +..-.+.-..-.|+|||++++..++. | .|.+.|...+.. ..+. ...+ . -....|||||+++
T Consensus 272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT-~~~~-----~-~~~p~~SpdG~~i 340 (425)
T COG0823 272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLT-FSGG-----G-NSNPVWSPDGDKI 340 (425)
T ss_pred Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEee-ccCC-----C-CcCccCCCCCCEE
Confidence 76443 54333333356899999998877653 3 577777777642 1222 2212 1 2278899999999
Q ss_pred EE-E-ecCe--EEEEECCCCceeeeeee
Q 005342 653 LS-I-HEGQ--IDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 653 ~s-g-~Dg~--I~iwd~~~g~~~~~l~~ 676 (701)
+. + .+|. |.+.|+.++...+.+..
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccc
Confidence 87 4 3555 77777777665555544
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.74 E-value=0.042 Score=59.70 Aligned_cols=240 Identities=13% Similarity=0.032 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCeEEEE-cCC----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------
Q 005342 395 SRESTSLPDADSAVCA-KSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------ 463 (701)
Q Consensus 395 V~~l~~spdg~~l~s~-s~d----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------ 463 (701)
+....+||||+++|.+ +.. ..+++.|+. +++...-.+ .......+.|.+||+.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~----tg~~l~d~i----~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE----TGKFLPDGI----ENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT----TTEEEEEEE----EEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC----CCcCcCCcc----cccccceEEEeCCCCEEEEEEeCccccccc
Confidence 5578899999999865 222 458999998 564433111 111122399999999887776543
Q ss_pred ---c--EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCC-eEEEEec--CCEEEEEe----C-CeEEEE
Q 005342 464 ---T--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR--GSHLFSAS----G-GKISIF 530 (701)
Q Consensus 464 ---~--i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-v~~l~~s--~~~l~s~s----d-g~I~iw 530 (701)
. |..|++.+. .....++ +....... ...+..+ +++++... + ..+++.
T Consensus 198 ~~~~~~v~~~~~gt~-----------------~~~d~lv---fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~ 257 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTP-----------------QSEDELV---FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLL 257 (414)
T ss_dssp CGCCEEEEEEETTS------------------GGG-EEE---EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEE
T ss_pred CCCCcEEEEEECCCC-----------------hHhCeeE---EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEE
Confidence 2 344433221 1111233 21122222 4566677 77766543 3 468899
Q ss_pred eCCCC----cEEEEecCCCCCe-EEEEEcCCC--eEEEE--eCCCcEEEEeCCCCce---EEeecCCCCCeEEEEEecCC
Q 005342 531 SLETF----QTLATFANPPPIA-TYFILLPQD--LFAFG--FDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 531 d~~~~----~~~~~~~~~~~~i-~~l~~spdg--~l~~g--s~dg~I~iwd~~~~~~---~~~l~~h~~~V~~v~~spdg 598 (701)
|+..+ .....+......+ ..+... .+ ++.+. ..++.|...++.+... ...+..|...+.-..+...+
T Consensus 258 d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 258 DLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp ECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred eccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 98774 2333333333344 334444 44 44443 2234777778776642 33455565543333444445
Q ss_pred CEEE-EEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCCCce
Q 005342 599 NVLV-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPTLNH 670 (701)
Q Consensus 599 ~~l~-s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~g~~ 670 (701)
.+|+ +...++ .|+++++..+... ..+. ++ .. +.|..+...+++..+.. | .-+++.-||+.+++.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~--~~~~-~p-~~----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKES--REIP-LP-EA----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEE--EEEE-SS-SS----SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEE--eeec-CC-cc----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 5444 444444 6899999933222 2222 22 11 55677776777665543 3 467899999999885
Q ss_pred e
Q 005342 671 T 671 (701)
Q Consensus 671 ~ 671 (701)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 341
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.72 E-value=5.1e-05 Score=46.30 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhc
Q 005342 14 THLITLIMKFLEEENFKESLQALEQES 40 (701)
Q Consensus 14 ~e~~rli~q~l~~~g~~~s~~~l~~Es 40 (701)
+++.+||.+||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 478999999999999999999999997
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.70 E-value=0.0014 Score=69.89 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=66.5
Q ss_pred EEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE
Q 005342 568 ILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (701)
Q Consensus 568 I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v 643 (701)
-.+|++...+. +..+ ...+.|.+++++|+...++.|+.||+|.+||...+-. ...+ .. -..+.+
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~k----a~----~~P~~i 305 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAK----AE----FIPTLI 305 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeee----ec----ccceEE
Confidence 34566554432 1222 2677899999999999999999999999999988631 1112 11 557899
Q ss_pred EEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 644 QFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 644 ~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
+|+|+|.++++| ..|.+.+||+.-.
T Consensus 306 aWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 306 AWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999999997 6699999998643
No 343
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.012 Score=60.13 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=102.6
Q ss_pred CeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC-----CCCeEEEEEcCCC-eEEEEeC-----------CCcE
Q 005342 508 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP-----PPIATYFILLPQD-LFAFGFD-----------DSSI 568 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~spdg-~l~~gs~-----------dg~I 568 (701)
.+.++..- +..|+++. ..+.+++.+++..+..+... ....+...+.|+| +.+.... -|.+
T Consensus 67 ~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 67 GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred CcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 33444433 55555554 33666676666553333211 2344788899999 4443322 1346
Q ss_pred EEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC--CeeeeeeeeeeccCCCCCCCCCeEEEEE
Q 005342 569 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQF 645 (701)
Q Consensus 569 ~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~--g~~~~~~~l~~~~~~~~~~~~~v~~v~~ 645 (701)
+.+|. .+..++.+.+|-..-+.++||||++.|+.+ +..+.|.-|++.. +............. .. +..-.++.
T Consensus 146 yr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~---G~PDG~~v 220 (307)
T COG3386 146 YRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-EP---GLPDGMAV 220 (307)
T ss_pred EEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC-CC---CCCCceEE
Confidence 66664 567777777766677899999999866655 4458888888763 22111111110111 11 44556777
Q ss_pred cCCCCEEEEE-ecC-eEEEEECCCCceeeeeee----eeEEEEEe
Q 005342 646 HPDQIHLLSI-HEG-QIDVYEAPTLNHTSQVLL----ISHIMFVQ 684 (701)
Q Consensus 646 spdg~~l~sg-~Dg-~I~iwd~~~g~~~~~l~~----i~~~~fs~ 684 (701)
..+|.+-+++ .+| .|.+|+.. |+++..+.. +++++|-.
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 7888887654 443 89999997 998887765 77888853
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.67 E-value=0.03 Score=58.10 Aligned_cols=254 Identities=14% Similarity=0.049 Sum_probs=117.7
Q ss_pred EEEcCCCCeEEEEc-CCCc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 398 STSLPDADSAVCAK-SLEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 398 l~~spdg~~l~s~s-~d~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
-+|.+||+.|+.++ .||. +.+-|+. +++..+++- . .........++|+++.++....+..+.-.|+.+.+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~----t~~i~QLTd--g-~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLA----TGEITQLTD--G-PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETT----T-EEEE-----S-S-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcc----cCEEEECcc--C-CCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 45889997766654 4555 4455665 666666552 1 11222245577888887776666677666664432
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEE----------------------Ee-CCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFS----------------------AS-GGKI 527 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s----------------------~s-dg~I 527 (701)
. +.+. ..+...+-...|. +..++. +. ...|
T Consensus 114 ~-------------------~~vy----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 114 E-------------------RVVY----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp E-------------------EEEE----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred E-------------------EEEE----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 1 0111 1112222222221 222211 11 2357
Q ss_pred EEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCC----cEEEEeCCC-CceEEeecCCCC--CeEEEEEecCC
Q 005342 528 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS----SILVHCPCT-KKTKAKLKGHQN--RITCLAYSLSL 598 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg----~I~iwd~~~-~~~~~~l~~h~~--~V~~v~~spdg 598 (701)
.-.|+.+|+....+. ....+..+.++|.. .|+.+-+.. .-+||-+++ +...+.+..|.. .+.-=-|.|||
T Consensus 171 ~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 171 FTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG 249 (386)
T ss_dssp EEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred EEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence 778888887655555 56678899999988 555544321 235555443 333444433332 23334789999
Q ss_pred CEEEEEe-----CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecC--------------
Q 005342 599 NVLVSSG-----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-------------- 658 (701)
Q Consensus 599 ~~l~s~s-----~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg-------------- 658 (701)
..|..-+ .+..|.-+|..+++... +... .......-++||++++. |.|.
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~---~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRR---LMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEE---EEEE---------SEEEEEE-TTSSEEEEEE-----------------
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceE---EEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 9665432 35578888999875322 2211 23456677899999886 5432
Q ss_pred --eEEEEECCCCceeeee---------ee-----eeEEEEEee--EEeeeecc
Q 005342 659 --QIDVYEAPTLNHTSQV---------LL-----ISHIMFVQI--VVKFHSFK 693 (701)
Q Consensus 659 --~I~iwd~~~g~~~~~l---------~~-----i~~~~fs~~--~~~f~~~~ 693 (701)
-|+++++++++..... .+ --+..|||+ .+-|.|-.
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 4677888877653211 11 346889998 45555544
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0015 Score=74.08 Aligned_cols=173 Identities=11% Similarity=0.102 Sum_probs=106.1
Q ss_pred eCCCCeEEeecccCCCCCCeEEEEec--------CCEEEEEeCCeEEEEeCCCC--cEEE----EecCCCCCeEEEEEcC
Q 005342 490 QPSSKLVMTNDIAADPKDSISCFALR--------GSHLFSASGGKISIFSLETF--QTLA----TFANPPPIATYFILLP 555 (701)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~v~~l~~s--------~~~l~s~sdg~I~iwd~~~~--~~~~----~~~~~~~~i~~l~~sp 555 (701)
|+..|+++.. +......+|.+++-+ .+.++.-+++.+..||.+-. +.+. .+ ......+|++-+.
T Consensus 510 DLe~GKVV~e-W~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~ 587 (794)
T PF08553_consen 510 DLERGKVVEE-WKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTE 587 (794)
T ss_pred ecCCCcEEEE-eecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecC
Confidence 6677776654 222233346666553 23344445889999998753 2332 12 1345678999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--CCe--------------
Q 005342 556 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--GWK-------------- 619 (701)
Q Consensus 556 dg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~--~g~-------------- 619 (701)
+|+||+|+.+|.|++||.-..+....+.|-..+|..|..+.||+||+..+ +..+-+++.. .|+
T Consensus 588 ~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~ 666 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKD 666 (794)
T ss_pred CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEeeecCCccCccccccccCcc
Confidence 99999999999999999433333344566678999999999999988655 4577777753 110
Q ss_pred -eeeeeeeeeccCCCC-------CCCCCeEEEEEcC----CCCEEEEEecCeEEEEECC
Q 005342 620 -KLCSKFLHSFQTGLV-------PETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 620 -~~~~~~l~~~~~~~~-------~~~~~v~~v~~sp----dg~~l~sg~Dg~I~iwd~~ 666 (701)
+-....|. +...|. ...-.-+...|+- ..+.|+++....+.+|++.
T Consensus 667 ~kp~Pr~L~-L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~ 724 (794)
T PF08553_consen 667 KKPQPRRLQ-LKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFK 724 (794)
T ss_pred CCCCCeEEe-cCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHH
Confidence 00111222 221121 0002223455542 3567888888889999985
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.65 E-value=0.0025 Score=68.72 Aligned_cols=195 Identities=9% Similarity=0.001 Sum_probs=98.8
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 520 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~ 520 (701)
.....+.++|+|+++++ +.||...+|.- ...+-. ..+.-..++|. .+.+|
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~---------------------~~~r~k-------~~G~g~~~vw~~~n~yA 83 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTA---------------------LAWRNK-------AFGSGLSFVWSSRNRYA 83 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEET---------------------TTTEEE-------EEEE-SEEEE-TSSEEE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEc---------------------cCCccc-------ccCceeEEEEecCccEE
Confidence 44678999999998877 56677778742 111111 12334467777 55666
Q ss_pred EEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342 521 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 521 s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg 598 (701)
+-. +++|.++.--+......+.. +..+..+.. | .++..+.+ .|.+||..+++.++++... +|..+.|+++|
T Consensus 84 v~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp EE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTS
T ss_pred EEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCC
Confidence 666 78899963223333233432 223444433 7 66665554 8999999999999998733 48999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC---------eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 599 NVLVSSGADAQLCVWDAVGW---------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 599 ~~l~s~s~D~~I~vwd~~~g---------~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
.++|-.+.+ .++|++.... -......+.++ . ..|.+..|..| -++.+... .++- +-+|+
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~----~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge 224 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---S----ERIKSGCWVED-CFIYTTSN-HLKY--LVNGE 224 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--------S--SEEEEETT-EEEEE-TT-EEEE--EETTE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---c----ceeEEEEEEcC-EEEEEcCC-eEEE--EEcCC
Confidence 999988755 7888776543 00001222211 1 67888888876 33334333 6665 33343
Q ss_pred --eeeeeee-eeEEEEEe
Q 005342 670 --HTSQVLL-ISHIMFVQ 684 (701)
Q Consensus 670 --~~~~l~~-i~~~~fs~ 684 (701)
.+++++. +.=+.+.|
T Consensus 225 ~~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 225 TGIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EEEEEE-SS--EEEEEET
T ss_pred cceEEEcCCceEEEEEEc
Confidence 2444443 33344443
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.60 E-value=3.2e-05 Score=82.08 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=128.2
Q ss_pred CCCEEEEEEecCCC--EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---
Q 005342 441 GGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 515 (701)
Q Consensus 441 ~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--- 515 (701)
...+.|++++-+.+ .+++|..+|.|.+-.+.... .++... .+++..+.++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-----------------dSs~E~----tp~~ar~Ct~lAwneLD 114 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-----------------DSSAEV----TPGYARPCTSLAWNELD 114 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-----------------ccccee----ccccccccccccccccc
Confidence 45677777765544 56778889999998663321 112222 25678899999999
Q ss_pred CCEEEEEe-----CCeEEEEeCCCCc--E--EEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342 516 GSHLFSAS-----GGKISIFSLETFQ--T--LATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 584 (701)
Q Consensus 516 ~~~l~s~s-----dg~I~iwd~~~~~--~--~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~ 584 (701)
.+.||+|- |..+.+||+.++- + ...|.+ ......+++|..+. ++.+|.....+.++|++.... ..-.-
T Consensus 115 tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~sv 193 (783)
T KOG1008|consen 115 TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSV 193 (783)
T ss_pred HHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhh
Confidence 45677663 3679999998762 1 122222 33445688898888 999999999999999883321 11111
Q ss_pred CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE-EEE-E-ecCeE
Q 005342 585 HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-I-HEGQI 660 (701)
Q Consensus 585 h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~-l~s-g-~Dg~I 660 (701)
.+..+..+..+| .++|+++-. ||.|.+||.... ...++..+.....+....+..++|+|...- +++ . +.++|
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 334566778888 788988766 899999994321 113333222121111134899999997543 333 4 67889
Q ss_pred EEEECC
Q 005342 661 DVYEAP 666 (701)
Q Consensus 661 ~iwd~~ 666 (701)
+.+|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999984
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.59 E-value=0.043 Score=54.29 Aligned_cols=197 Identities=12% Similarity=0.061 Sum_probs=105.7
Q ss_pred CCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC
Q 005342 440 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 517 (701)
Q Consensus 440 ~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~ 517 (701)
-...+..++|.|+.+.|++... .+.|..+ +. +|+++.. +.-...+..-.+++. +.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~el---------------------s~-~G~vlr~-i~l~g~~D~EgI~y~g~~ 76 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYEL---------------------SL-DGKVLRR-IPLDGFGDYEGITYLGNG 76 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEE---------------------ET-T--EEEE-EE-SS-SSEEEEEE-STT
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEE---------------------cC-CCCEEEE-EeCCCCCCceeEEEECCC
Confidence 3556999999998776666655 5666555 33 3444432 111223567788888 55
Q ss_pred EEEEEe--CCeEEEEeCCCCc------EEEEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CceEE
Q 005342 518 HLFSAS--GGKISIFSLETFQ------TLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---KKTKA 580 (701)
Q Consensus 518 ~l~s~s--dg~I~iwd~~~~~------~~~~~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~---~~~~~ 580 (701)
.++..+ ++.+.++++.... ....+. .+...+-.++|+|.+ .++++-+..-..+|.+.. ...+.
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 555555 7999998883321 122222 234568999999998 666666766666665543 11111
Q ss_pred --ee------cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC---CCCCCeEEEEEcCC
Q 005342 581 --KL------KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV---PETTIVNHIQFHPD 648 (701)
Q Consensus 581 --~l------~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~---~~~~~v~~v~~spd 648 (701)
.. ......+.+++++| .+.+++-+.....|.++| ..|+...... +..+.. ..-...-.|+|.++
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~---L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS---LDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE----STTGGG-SS---SEEEEEE-TT
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE---eCCcccCcccccCCccEEEECCC
Confidence 11 11334688999999 466777788888999999 5555443333 333221 00024678999999
Q ss_pred CCEEEEEecCeEEEE
Q 005342 649 QIHLLSIHEGQIDVY 663 (701)
Q Consensus 649 g~~l~sg~Dg~I~iw 663 (701)
|++.+++.-+..+++
T Consensus 233 G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 233 GNLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTEEEEE
T ss_pred CCEEEEcCCceEEEe
Confidence 999888876666655
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.002 Score=69.21 Aligned_cols=180 Identities=13% Similarity=0.102 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCeEEEEc---CC-CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAK---SL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s---~d-~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd 469 (701)
+...+|+|+++.++..+ .. ..+.+++++ +++...+. . ..+.-..-+|+|||++++.++. ||...+|-
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~----~g~~~~i~-~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN----TGKRPVIL-N---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEecc----CCccceee-c---cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 66788999999877652 22 468888987 44433322 1 1334455689999998887665 78777773
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--C--eEEEEeCCCCcEEEEecC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--G--KISIFSLETFQTLATFAN 543 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--g--~I~iwd~~~~~~~~~~~~ 543 (701)
. |..++.... +.. ..+.-..-.|+ |+.++..+| | .|.++|.+.+.. ..+..
T Consensus 267 ~-------------------dl~~~~~~~--Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~ 323 (425)
T COG0823 267 M-------------------DLDGKNLPR--LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF 323 (425)
T ss_pred E-------------------cCCCCccee--ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence 3 555555322 211 11222244566 888888873 3 577788866554 33332
Q ss_pred CCCCeEEEEEcCCC-eEEEEeC-CCc--EEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342 544 PPPIATYFILLPQD-LFAFGFD-DSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~-dg~--I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~ 606 (701)
....-..-.|+||| +|+..+. +|. |.+.|+.++..++.+. +......-.|.|+|.++...+.
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 32223378899999 6655543 454 7778877766555554 3334455688889987776554
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.57 E-value=0.025 Score=60.15 Aligned_cols=223 Identities=12% Similarity=0.137 Sum_probs=119.4
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc-----cccccc--------eeeEEeeC------C--CCeEEeecc
Q 005342 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL-----EEENVN--------MESQLYQP------S--SKLVMTNDI 501 (701)
Q Consensus 443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~-----g~~~~~--------~~i~~~d~------~--~~~~~~~~~ 501 (701)
.|+.+.|+++..-|++|...|.|.+|.+..+.... ...... ..-.+-|. . .| ++...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g-f~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG-FLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-EEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-cCchhh
Confidence 58899999998899999999999999986664311 000000 00111111 1 12 222112
Q ss_pred cCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEe--cC------CCCCeEEEEEc-----CCC----eEEEE
Q 005342 502 AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF--AN------PPPIATYFILL-----PQD----LFAFG 562 (701)
Q Consensus 502 ~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~--~~------~~~~i~~l~~s-----pdg----~l~~g 562 (701)
.....++|++++.| =.+++.|. +|.+.|.|++....+..- .. ....++++.|+ .|+ .+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 23447899999999 66899999 899999999877766542 21 23456777776 233 88999
Q ss_pred eCCCcEEEEeCC--C-Cc----eEEeecCCCCCeEEEE-EecC-C-------------------C-EEEEEeCCCeEEEE
Q 005342 563 FDDSSILVHCPC--T-KK----TKAKLKGHQNRITCLA-YSLS-L-------------------N-VLVSSGADAQLCVW 613 (701)
Q Consensus 563 s~dg~I~iwd~~--~-~~----~~~~l~~h~~~V~~v~-~spd-g-------------------~-~l~s~s~D~~I~vw 613 (701)
+..|.+.+|.+. . +. .......+.++|..+. ++.+ | + +++. ..+..|+|+
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEE
Confidence 999999999764 1 21 1222223556666654 4222 0 1 4444 446789999
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-----CCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-----PDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-----pdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
...+.+... +... .+ ..+..+.+- ..+..|++ ..+|.|+++.+...+.+..+..
T Consensus 241 ~~~~~k~~~-K~~~----~~----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 241 KPPKSKGAH-KSFD----DP----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp -TT---EEE-EE-S----S-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred eCCCCcccc-eeec----cc----cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 998864322 1111 11 233344442 23444555 4899999999999888776654
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.53 E-value=0.057 Score=53.41 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=104.8
Q ss_pred CCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 391 DNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
+-.. ++.++|.|+.. +++.....+.|...+.. +.....+.+ .+ .+..-.+++..++.++++--.++.+.+.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l--~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----GKVLRRIPL--DG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE---SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC----CCEEEEEeC--CC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 3344 89999999865 55556666777767763 333334333 32 4678899998888776655458889888
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC---CcEEEEe-
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATF- 541 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~---~~~~~~~- 541 (701)
++...... . +...-+.+...+...+...+-.++|+ ++.++.+. ..-..+|.+.. ...+...
T Consensus 92 ~~~~~~~~----~--------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 92 TIDDDTTS----L--------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EE----TT--------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEeccccc----c--------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 77332110 0 00000001111212345568899998 66666666 44344444432 1111111
Q ss_pred -------cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCC---------CCeEEEEEecCCCEEEE
Q 005342 542 -------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------NRITCLAYSLSLNVLVS 603 (701)
Q Consensus 542 -------~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~v~~spdg~~l~s 603 (701)
......+.+++++|.. +++.+..+..|..+| .+|+++..+.-.. ...-.|+|.++|++.+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI- 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI- 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-
Confidence 1123356889999987 777778888999999 6777766543211 2467899999997544
Q ss_pred EeCCCeEEEE
Q 005342 604 SGADAQLCVW 613 (701)
Q Consensus 604 ~s~D~~I~vw 613 (701)
.|+-+..+++
T Consensus 238 vsEpNlfy~f 247 (248)
T PF06977_consen 238 VSEPNLFYRF 247 (248)
T ss_dssp EETTTEEEEE
T ss_pred EcCCceEEEe
Confidence 5567776665
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.082 Score=56.99 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=108.9
Q ss_pred EEEcCCCCeEEEEcCC----------C-cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 398 STSLPDADSAVCAKSL----------E-KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 398 l~~spdg~~l~s~s~d----------~-~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
++.+|.|--+|....+ . .|.+|+.. +..+..+.. . .+.+.++.|+.+.. |++...||.++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s----G~ll~~i~w--~--~~~iv~~~wt~~e~-LvvV~~dG~v~ 104 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS----GKLLSSIPW--D--SGRIVGMGWTDDEE-LVVVQSDGTVR 104 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC----CCEeEEEEE--C--CCCEEEEEECCCCe-EEEEEcCCEEE
Confidence 4555655555554333 2 48888885 444444433 2 38999999998654 67778999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCc-EEEEe---
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQ-TLATF--- 541 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~-~~~~~--- 541 (701)
+||+.+... + .-+..+. ...-....+....+. ...++...++.+.+.+--... ..+.+
T Consensus 105 vy~~~G~~~-------------f--sl~~~i~--~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~ 167 (410)
T PF04841_consen 105 VYDLFGEFQ-------------F--SLGEEIE--EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEI 167 (410)
T ss_pred EEeCCCcee-------------e--chhhhcc--ccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccC
Confidence 998743210 0 0011000 000111222222222 223333335555444322211 11111
Q ss_pred cCCC-----C-CeEE-EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 542 ANPP-----P-IATY-FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 542 ~~~~-----~-~i~~-l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
.+.. . .... ..++.+. ..+....++.+++.+-...+. +. ..+++..++.||+|+++|.-..+|.+.|.
T Consensus 168 p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 168 PGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 1100 0 0011 2344444 444444555666444332211 22 24689999999999999999999999998
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
+..-.+..+. +..+.. .....+.|.-+.
T Consensus 244 ssDf~~~~~e-----~~~~~~---~~p~~~~WCG~d 271 (410)
T PF04841_consen 244 SSDFSEKLCE-----FDTDSK---SPPKQMAWCGND 271 (410)
T ss_pred ECcccceeEE-----eecCcC---CCCcEEEEECCC
Confidence 8765433222 222211 445566666553
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.039 Score=58.73 Aligned_cols=250 Identities=12% Similarity=0.072 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC----------------------ceeEeec-----------C---CC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS----------------------ECRTLLL-----------P---DN 438 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~----------------------~~~~l~~-----------~---~~ 438 (701)
|..+.|.++..-|+.|...|.|.+|.+......+ .+..++. | ..
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 7889999999999999999999998775332111 1101000 0 01
Q ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---
Q 005342 439 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 515 (701)
Q Consensus 439 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--- 515 (701)
...++|++++.|.=| +++.|..+|.+.|.|+++... +|...-.. ..........++++.|+
T Consensus 84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav------------I~~~~i~~---~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV------------IYNENIRE---SFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE------------EEEEEGGG-----T-SS----EEEEEEEEEE
T ss_pred ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE------------Eeeccccc---cccccccccCeeEEEEEEEe
Confidence 236889999997444 889999999999998855422 11100000 00112344567788887
Q ss_pred --C-----CEEEEEe-CCeEEEEeCC--C-CcE----EEEecCCCCCeEEEE-EcCC-----------------C----e
Q 005342 516 --G-----SHLFSAS-GGKISIFSLE--T-FQT----LATFANPPPIATYFI-LLPQ-----------------D----L 558 (701)
Q Consensus 516 --~-----~~l~s~s-dg~I~iwd~~--~-~~~----~~~~~~~~~~i~~l~-~spd-----------------g----~ 558 (701)
+ -.+++|+ .|.+.+|.+. . +.. ......+.+++..+. ++.+ | .
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 1 2467777 7999999864 1 211 112223445554444 3211 1 2
Q ss_pred EEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342 559 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (701)
Q Consensus 559 l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s-----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~ 633 (701)
+++...+..++++...+.+..++.....-....+.+- ..+..|++-..+|.|+++.+..=+.+....+... -.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~--~d 305 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP--LD 305 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc--cc
Confidence 4444556789999988877766554222233344452 3566888889999999999998543332222100 01
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 634 ~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
. ..+....++++|..++-.....+.++.+
T Consensus 306 ~---~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 306 S---RRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp H---HHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred c---ccccccEECCCCCEEEEeCcccEEEEEE
Confidence 1 3445677899999887654444444433
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.42 E-value=0.018 Score=60.92 Aligned_cols=262 Identities=12% Similarity=0.090 Sum_probs=126.1
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
+...++|+++++....... ...+. ...|||+ ..++.|.+++..++...+.- ..|...+..|.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~-~~~~~--~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT---------~dg~~~i~nG~ 90 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP-PPKLQ--DAKWSPDGKYIAFVRDNNLYLRDLATGQETQLT---------TDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEETTTTEEEESS-E-ETTBS--EEEE-SSSTEEEEEETTEEEEESSTTSEEEESE---------S--TTTEEESB
T ss_pred eeEEEEecCCCceEECcCC-ccccc--cceeecCCCeeEEEecCceEEEECCCCCeEEec---------cccceeEEcCc
Confidence 5567888888766654444 44566 8899999 66788999988887554431 22211111110
Q ss_pred -CCCCCCccccCCCceEEEEEcCCCCeEEEEcCC-CcEEEEeccccCCCC----ceeEeecCCC----------------
Q 005342 381 -DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-EKSVNLKLQLINEPS----ECRTLLLPDN---------------- 438 (701)
Q Consensus 381 -D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d-~~v~iw~~~~~~~~~----~~~~l~~~~~---------------- 438 (701)
|-.-..+.+.. -..+.|||||++||....| ..|..+.+....... +...+..|..
T Consensus 91 ~dwvyeEEv~~~---~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~ 167 (353)
T PF00930_consen 91 PDWVYEEEVFDR---RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS 167 (353)
T ss_dssp --HHHHHHTSSS---SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred cceecccccccc---ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence 00000000111 2357799999999876433 333333322111111 1111111111
Q ss_pred -------------CCCCCEEEEEEecCCCEEEEEEC--C-CcEEEEecCCCCccccccccceeeEEeeCCCCeE--Eeec
Q 005342 439 -------------SFGGRVVRLIYSHSGDFLVALTQ--T-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV--MTND 500 (701)
Q Consensus 439 -------------~~~~~v~~l~~spdg~~l~s~s~--d-g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~--~~~~ 500 (701)
.....+..+.|+++++.++..-. + +.+.+ .++|..++.. +...
T Consensus 168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l-------------------~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL-------------------VLCDASTGETRVVLEE 228 (353)
T ss_dssp TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE-------------------EEEEECTTTCEEEEEE
T ss_pred CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE-------------------EEEECCCCceeEEEEe
Confidence 12334666777777773333222 2 22222 2235444431 1111
Q ss_pred ccCCCCCCeEEEEe--c-CCE-EEEEe-CC--eEEEEeCCCCcEEEEecCCCCCeEE-EEEcCCC--eEEEEeCCC----
Q 005342 501 IAADPKDSISCFAL--R-GSH-LFSAS-GG--KISIFSLETFQTLATFANPPPIATY-FILLPQD--LFAFGFDDS---- 566 (701)
Q Consensus 501 ~~~~~~~~v~~l~~--s-~~~-l~s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~-l~~spdg--~l~~gs~dg---- 566 (701)
...+--..-....+ . +.. +.... +| .|.+++..++. .+.+....-.|.. +.+++++ ...++..++
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 11111111112332 2 444 44444 54 67777776555 4456555666744 7788887 555665533
Q ss_pred cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 567 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
.++..++.++..+..+....+.-..+.|||+|++++-
T Consensus 308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 6777777733445556644433368999999997764
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0021 Score=69.63 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=85.9
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
.+.--+++..+ +++.|+.-|.+++|+...++... +..+..+.+.....|++..++|.|+..|.|.|+-+..+.+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34444555566 99999999999999976665432 23334455666788999999999999999999998875433223
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
.+......| ...|++++|++|+..+++| +.|+|..-.+.+
T Consensus 115 ~~t~~d~~~---~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSH---KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccC---CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 332222223 3899999999999999999 678888777765
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.00063 Score=44.76 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.5
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
++.+..+.+|...|.++.|+|++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.28 E-value=0.46 Score=52.69 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCeEEEEeCCCCcEEEEecCCCC--------------------Ce-EEEEEcCCC-eEEEEeCCC---------------
Q 005342 524 GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS--------------- 566 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~--------------------~i-~~l~~spdg-~l~~gs~dg--------------- 566 (701)
+|.+..+|..+|+.+..+..... .+ .+.++++.+ .+++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 57899999999998887753211 01 134556556 777787665
Q ss_pred ---cEEEEeCCCCceEEeecC--CCC----CeEEEEEe----cCCC---EEEEEeCCCeEEEEECCCCeeee
Q 005342 567 ---SILVHCPCTKKTKAKLKG--HQN----RITCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 567 ---~I~iwd~~~~~~~~~l~~--h~~----~V~~v~~s----pdg~---~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
.|+-+|..+|+..-.++. |.. ......+. -+|. .++.++.+|.++..|.++|+.+-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 799999999998766542 211 00111111 1333 57778889999999999987654
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.38 Score=51.45 Aligned_cols=201 Identities=12% Similarity=0.065 Sum_probs=132.6
Q ss_pred CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
..-..++.++++..+..... ++.+.+.|. .+..+... ...+. ....++++ ++.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~---------------------~~~~~~~~-~~vG~--~P~~~~~~~~~~~ 129 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDT---------------------ATNTVLGS-IPVGL--GPVGLAVDPDGKY 129 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcC---------------------cccceeeE-eeecc--CCceEEECCCCCE
Confidence 34457788888886555554 578888753 33333322 11122 45567777 666
Q ss_pred EEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEE-e----ecCCCC
Q 005342 519 LFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKA-K----LKGHQN 587 (701)
Q Consensus 519 l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~~~~~~-~----l~~h~~ 587 (701)
+.++. ++.+.+.|-.+++...+......+ ..++++|+| .++ +...++.|.+.|..+....+ . ..-+ .
T Consensus 130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~ 207 (381)
T COG3391 130 VYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T 207 (381)
T ss_pred EEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C
Confidence 66554 378999999999888875543344 899999999 444 44578899999977665553 1 1112 2
Q ss_pred CeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEE
Q 005342 588 RITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV 662 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~i 662 (701)
....+.++|+|+.+...... +.+.+.|..++..... . ...+. .....+..+|+|+.+.+. ..+.+.+
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---~-~~~~~----~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---D-LPVGS----GAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---c-ccccc----CCCCceeECCCCCEEEEEecCCCeEEE
Confidence 34678999999966554433 5999999998743221 0 11111 134578899999999885 4578999
Q ss_pred EECCCCceeeeeee
Q 005342 663 YEAPTLNHTSQVLL 676 (701)
Q Consensus 663 wd~~~g~~~~~l~~ 676 (701)
-|..+.+.......
T Consensus 280 id~~~~~v~~~~~~ 293 (381)
T COG3391 280 IDGATDRVVKTGPT 293 (381)
T ss_pred EeCCCCceeeeecc
Confidence 99988888777655
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.034 Score=58.03 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCc-EEEEec-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEE
Q 005342 504 DPKDSISCFALRGSHLFSASGGKISIFSLETFQ-TLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKA 580 (701)
Q Consensus 504 ~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~-~~~~~~-~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~-~~~~~ 580 (701)
...++|++++--+.+++++.++.|.+|++...+ ....-. .....++++....+ +|++|.....+.++..+. ...+.
T Consensus 86 ~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 86 EVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp EESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EE
T ss_pred eecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEE
Confidence 346789888877556888889999999998777 433322 12335666665543 899999888888764332 22222
Q ss_pred eecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 581 KLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 581 ~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
.+.. ....++++.|-++++.++.+..+|.+.++....
T Consensus 165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 2221 344688888887777899999999999998873
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.24 E-value=0.22 Score=55.61 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=38.8
Q ss_pred eEEEEeCCCCcEEEEecCCCCC---------eEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceE
Q 005342 526 KISIFSLETFQTLATFANPPPI---------ATYFILLPQD----LFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~~~---------i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
.|.-.|++||+....++..... ..-+....+| .++.+..+|.+++.|.++|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6778899999988877642221 1222232455 6789999999999999999886
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.20 E-value=0.0082 Score=68.31 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=93.9
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCC-eEEEEEcC-----CC-eEEEEeCCCcEEEEeCCCCc--eEEe-ec--CCCCCeEE
Q 005342 524 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC 591 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp-----dg-~l~~gs~dg~I~iwd~~~~~--~~~~-l~--~h~~~V~~ 591 (701)
...++-.|+++|+.+..+..+... |..++-.. .+ ..++|-.+..++.||.+-.. ++.. .. ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999876543 55544321 12 56788899999999998532 3321 11 12335677
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
++-+.+| +||.||.+|.||+||. .|.. .... ++ +-. .+|.+|..+.||+++++..+..+-+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~-AKT~---lp-~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDR-LGKR-AKTA---LP-GLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecc-cchh-hhhc---CC-CCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 7776666 6888999999999994 3321 1112 22 322 8999999999999999988888888886
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.19 E-value=0.13 Score=50.68 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=107.6
Q ss_pred CCCCeEEEEe-c-CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce
Q 005342 505 PKDSISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKT 578 (701)
Q Consensus 505 ~~~~v~~l~~-s-~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~ 578 (701)
.......+.+ . |.++-+.+ - ..|+.+|+.+++......-.. .---.++...|......-.++...+||..+.+.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence 3445667888 4 55555555 3 489999999998776654322 222455555554555567899999999999999
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (701)
Q Consensus 579 ~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D 657 (701)
+.++.- .+.-+.++ .|++.|+.+....+++++|.++.+......+. ..+.. -..++.+.|- +|...|=- ..
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTS
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCC
Confidence 988874 34556666 46676766666789999999886544322222 11211 1457778886 55444434 57
Q ss_pred CeEEEEECCCCceeeeeee-------------------eeEEEEEee
Q 005342 658 GQIDVYEAPTLNHTSQVLL-------------------ISHIMFVQI 685 (701)
Q Consensus 658 g~I~iwd~~~g~~~~~l~~-------------------i~~~~fs~~ 685 (701)
..|...|..+|+++..+.. .+++||.|.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 7899999999998886643 678888765
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0015 Score=69.83 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=73.6
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
..+..+.|+|.-..+|.+..+|.|-+..+.- .+ +.+++... ..+ .+++|.|||+.||+| .||+|++-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qR-----lwtip~p~----~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-QR-----LWTIPIPG----ENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-ce-----eEeccCCC----CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 4688899999999999999999999988883 22 22233222 334 499999999999999 899999999
Q ss_pred CCCCceeeeeee-----eeEEEEEeeEEeee
Q 005342 665 APTLNHTSQVLL-----ISHIMFVQIVVKFH 690 (701)
Q Consensus 665 ~~~g~~~~~l~~-----i~~~~fs~~~~~f~ 690 (701)
+++|..+...+. |+...|++..+...
T Consensus 91 ve~~~~l~~~~~s~e~~is~~~w~~~~v~~e 121 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSVETDISKGIWDRIEVRVE 121 (665)
T ss_pred ccCCCceeccccccccchheeecccceeecc
Confidence 999998888443 88888876655443
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.042 Score=58.05 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=68.9
Q ss_pred EEEEEeCCeEEEEeCCCC-c-EEEEecCC----CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE
Q 005342 518 HLFSASGGKISIFSLETF-Q-TLATFANP----PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (701)
Q Consensus 518 ~l~s~sdg~I~iwd~~~~-~-~~~~~~~~----~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 591 (701)
.|+.-++..|.-||.+-. . .+...++| .....|.+-..+|+|++|+.+|.|++||.-.......+.|-..+|..
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH 476 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence 444445888999997632 2 22222222 33457788888889999999999999996333334456777789999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
|..+.||++|+..+ +..+.+-++.
T Consensus 477 VdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 477 VDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEeeccCcEEEEec-ccEEEEEEEe
Confidence 99999999887544 5667666654
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.15 E-value=0.00018 Score=76.66 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=118.5
Q ss_pred eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEEC----CCcEEE
Q 005342 395 SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQ----TATHKL 467 (701)
Q Consensus 395 V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~----dg~i~v 467 (701)
+.|+++.- |...++.|..+|.|.+-.+......+ +. ...++...+++++|++- .+.|++|-. |..+.|
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs--~E---~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS--AE---VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCccccc--ce---ecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 66676643 44588899999999998886433332 22 11246788999999984 455555532 578889
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-EEEEecC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLATFAN 543 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~ 543 (701)
||+.+.-. +|...-.+ ..+......+++|. .+.+.+|. ...++++|++... ....+
T Consensus 134 wdi~s~lt--------------vPke~~~f----s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 134 WDINSLLT--------------VPKESPLF----SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred eecccccC--------------CCcccccc----ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--
Confidence 98755311 11111111 11122344477777 45566666 6799999997322 22222
Q ss_pred CCCCeEEEEEcC-CC-eEEEEeCCCcEEEEe-CCCC-ceEEeecCCC----CCeEEEEEecCCC-EEEEEeC-CCeEEEE
Q 005342 544 PPPIATYFILLP-QD-LFAFGFDDSSILVHC-PCTK-KTKAKLKGHQ----NRITCLAYSLSLN-VLVSSGA-DAQLCVW 613 (701)
Q Consensus 544 ~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd-~~~~-~~~~~l~~h~----~~V~~v~~spdg~-~l~s~s~-D~~I~vw 613 (701)
....+..+.++| .+ ++++.+ ||.|-+|| .+.- .++..+...+ ..+..++|.|... .+++.+. .++|+.+
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 234567788888 44 666655 99999999 3322 2222222112 2489999999533 5555554 5689999
Q ss_pred ECCC
Q 005342 614 DAVG 617 (701)
Q Consensus 614 d~~~ 617 (701)
|+..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9864
No 366
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0031 Score=64.12 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=90.9
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch----------hHHHHHHHHhcCCHHHHHHHhccc-ccccCCccccee
Q 005342 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFF----------NVHRFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKM 80 (701)
Q Consensus 12 ~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~ 80 (701)
+.+.+..+|..++...|..+.+..|-+|||... ++.++-+++..||-.-|++.+..- ..+.+.. ..+
T Consensus 115 ~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~--s~L 192 (394)
T KOG2817|consen 115 TSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS--SSL 192 (394)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc--ccH
Confidence 445568999999999999999999999999985 388889999999999999998654 2223222 228
Q ss_pred hhhhhhhhhhHHHhcCChh--HHHHHHHhcccccccCChhHHH-HHHHHhccc
Q 005342 81 FFELRKHKYCEALCRHERT--EADSIFRKDLKVFSVSQNRIDC-ELAELLALK 130 (701)
Q Consensus 81 ~~~l~~q~~lEll~~~~~~--~a~~~L~~~l~~~~~~~~~~~~-~l~~~l~~~ 130 (701)
.|.|..++|++++..|... +|+.-.|+.++|+.......++ -...++.+.
T Consensus 193 E~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~ 245 (394)
T KOG2817|consen 193 EFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLR 245 (394)
T ss_pred HHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 8999999999999998888 9999999999999543322233 334444443
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0026 Score=68.13 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
...+..+.|+|.- ++|.+..+|.|-+..+. .+.+-++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4567889999998 99999999999998877 666777776666677 99999999999999999999999999986544
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEc
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFH 646 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~s 646 (701)
..+.. .. ..|.++.|+
T Consensus 99 ~~~~s-----~e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFS-----VE---TDISKGIWD 114 (665)
T ss_pred ccccc-----cc---cchheeecc
Confidence 32111 11 566777775
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.036 Score=58.50 Aligned_cols=136 Identities=17% Similarity=0.242 Sum_probs=95.3
Q ss_pred EEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC---e-----EEEEeCCCcEEEEeCCCC-c-eEEeecCCC-
Q 005342 519 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---L-----FAFGFDDSSILVHCPCTK-K-TKAKLKGHQ- 586 (701)
Q Consensus 519 l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg---~-----l~~gs~dg~I~iwd~~~~-~-~~~~l~~h~- 586 (701)
+.++. ...++-.|++.|+.+....-+.. |+-+.+.|++ . -+.|-.|..|.-||.+-. . .+..-.+|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33444 47899999999999988876555 7777788876 2 356788899999998743 2 222222332
Q ss_pred ---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEE
Q 005342 587 ---NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 663 (701)
Q Consensus 587 ---~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iw 663 (701)
....|.+-..+| ++|.||.+|.|++||. .|... ...+. +-. .+|..|..+.||++|++..+..+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A-KTAlP----gLG---~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA-KTALP----GLG---DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh-hhccc----ccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence 234555544444 7899999999999998 44211 11222 333 88999999999999999888888888
Q ss_pred EC
Q 005342 664 EA 665 (701)
Q Consensus 664 d~ 665 (701)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 76
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.98 E-value=0.053 Score=45.61 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=63.1
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 553 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 553 ~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
|..|| .|++||+|..|++|+ ..+.+.++.. .+.|++++-... ..++.+-.+|+|-+|+-... ... +.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R----lWR---iK 78 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR----LWR---IK 78 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce----eee---ec
Confidence 44566 899999999999997 4466777763 456788776655 56888999999999987541 112 22
Q ss_pred CCCCCCCCCeEEEEEcC---CC-CEEEEE-ecCeEE
Q 005342 631 TGLVPETTIVNHIQFHP---DQ-IHLLSI-HEGQID 661 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~sp---dg-~~l~sg-~Dg~I~ 661 (701)
.. ..++++.+.. || +-|++| .+|.|-
T Consensus 79 SK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SK-----NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cC-----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 3456665543 33 357777 677664
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.97 E-value=0.5 Score=51.23 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=115.4
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCC------
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLE------ 414 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~------ 414 (701)
+...++++.|+.+|+.+... +.+. ....+.|.+|++.|+....+.
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~---------i~~~--------------------~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDG---------IENP--------------------KFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEE---------EEEE--------------------ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred CceEEEEEEECCCCcCcCCc---------cccc--------------------ccceEEEeCCCCEEEEEEeCccccccc
Confidence 34467999999998655431 1110 022489999999877665333
Q ss_pred -----cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC-c-EEEEecCCCCccccccccceeeE
Q 005342 415 -----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA-T-HKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 415 -----~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~-i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
.|..|.+.+..... .+.+...........+..++|+++++..+..+ . -.+|=+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d---~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~----------------- 257 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSED---ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLL----------------- 257 (414)
T ss_dssp CGCCEEEEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEE-----------------
T ss_pred CCCCcEEEEEECCCChHhC---eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEE-----------------
Confidence 36777776321111 11111221122267889999999887655432 2 333322
Q ss_pred EeeCCCC-----eEEeecccCCCCCCeEEEEecCC-EEEEEe----CCeEEEEeCCCCcE---EEEecCCCCC--eEEEE
Q 005342 488 LYQPSSK-----LVMTNDIAADPKDSISCFALRGS-HLFSAS----GGKISIFSLETFQT---LATFANPPPI--ATYFI 552 (701)
Q Consensus 488 ~~d~~~~-----~~~~~~~~~~~~~~v~~l~~s~~-~l~s~s----dg~I~iwd~~~~~~---~~~~~~~~~~--i~~l~ 552 (701)
+...+ .... +.....+....+...|. +++... .+.|...++.+... ...+..+... +..+.
T Consensus 258 --d~~~~~~~~~~~~~--l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 258 --DLDDGGSPDAKPKL--LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp --ECCCTTTSS-SEEE--EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred --eccccCCCcCCcEE--EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 33332 1111 11122222333333344 443332 36788888877652 3244445553 45555
Q ss_pred EcCCCeEEEEeCCC--cEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCE-EEE-EeC--CCeEEEEECCCCee
Q 005342 553 LLPQDLFAFGFDDS--SILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNV-LVS-SGA--DAQLCVWDAVGWKK 620 (701)
Q Consensus 553 ~spdg~l~~gs~dg--~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~-l~s-~s~--D~~I~vwd~~~g~~ 620 (701)
...+.+++....++ .|+++|+..+.....+.. -.+.|..+...++++. .++ .|. -++++.||+.+++.
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44333666666666 689999883434333332 3344566655566553 333 332 46899999999863
No 371
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.95 E-value=0.035 Score=61.09 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=69.2
Q ss_pred CCC-eEEEEeCCCcEEEEeCCC-----CceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeee-----
Q 005342 555 PQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLC----- 622 (701)
Q Consensus 555 pdg-~l~~gs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~----- 622 (701)
++| +... .++.|.+.|.++ .+.+..+.. ......++++|||+++++++ .+.+|.|.|+.+.+...
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 355 3333 356799999888 355555543 34568899999999877554 58999999998843200
Q ss_pred --eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 623 --SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 623 --~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
.....++.-| ..-...+|.++|....+- -|..|..||+.+
T Consensus 363 ~~~~vvaevevG-----lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELG-----LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccC-----CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0111222223 334678899999744443 799999999975
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.52 Score=50.22 Aligned_cols=90 Identities=9% Similarity=0.051 Sum_probs=52.3
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee---------eeeeeccCCCCCCCCCeEEEEEcCC-CCEEEE
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS---------KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS 654 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~---------~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~s 654 (701)
....+.+++.+|++++.|+...=|+|.++|+.++..+.. ..+......+. +...-....-.+. ..+|+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~-~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR-DRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc-ccccccccCCCCcceEEEEE
Confidence 334688899999999988888889999999998643221 00110000000 0000000000001 123444
Q ss_pred -E-ecCeEEEEECCCCceeeeee
Q 005342 655 -I-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 655 -g-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
. .-|.|.||++++|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 4 78999999999999887664
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.89 E-value=0.45 Score=51.30 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEE
Q 005342 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVL 601 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l 601 (701)
++.+.+.+-...+. +. ..+++..+++||+| ++|.-..+|.+.+.+..-.+....+... ......+.|.
T Consensus 199 g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC------ 268 (410)
T PF04841_consen 199 GETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC------ 268 (410)
T ss_pred CCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE------
Confidence 56666555432211 22 34689999999999 9999999999999886655555555432 2344555554
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|.|..+.-|. .. ...+ |.. + ..+.|.-++..++...-..++|..-.+.+.++.++.
T Consensus 269 ---G~dav~l~~~--~~----l~lv-----g~~---~--~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 269 ---GNDAVVLSWE--DE----LLLV-----GPD---G--DSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVPD 324 (410)
T ss_pred ---CCCcEEEEeC--CE----EEEE-----CCC---C--CceEEeccCceEEeccCCceEEEeCCceEEEEECCH
Confidence 4444444451 10 0111 110 1 124455555555566433489998877788887776
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.48 Score=50.70 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=126.4
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEec
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~ 470 (701)
-..++.++++. ..++...++.|.+.|.. +..+.... + -......++++|+++.+.++.. ++.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~----~~~~~~~~-~---vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi-- 145 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA----TNTVLGSI-P---VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI-- 145 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCc----ccceeeEe-e---eccCCceEEECCCCCEEEEEecccCCceEEEE--
Confidence 34678888888 44555556899999966 33333311 1 1226678999999988887776 3555554
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEE-E---ec
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA-T---FA 542 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~-~---~~ 542 (701)
|..++.+... ...+. .+ ..++++ |+.++.+. ++.|.+.|..+....+ . ..
T Consensus 146 -------------------d~~t~~~~~~-~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~ 203 (381)
T COG3391 146 -------------------DAATNKVTAT-IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV 203 (381)
T ss_pred -------------------eCCCCeEEEE-EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence 6666665544 32222 23 678888 77676665 7999999987665553 1 01
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV 616 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~ 616 (701)
........+.++|+| .+.+.... +.+...|..++..... ...-......+..+|+|..+.+.. ..+.+.+-|..
T Consensus 204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 122344789999999 44443333 5999999988877664 221111456789999999887764 44889999988
Q ss_pred CCe
Q 005342 617 GWK 619 (701)
Q Consensus 617 ~g~ 619 (701)
+..
T Consensus 284 ~~~ 286 (381)
T COG3391 284 TDR 286 (381)
T ss_pred CCc
Confidence 864
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.83 E-value=0.31 Score=50.78 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=98.9
Q ss_pred EEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-
Q 005342 448 IYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 523 (701)
Q Consensus 448 ~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s- 523 (701)
+|.+||+.|+.++. ||.-.+|-+ |+.+++..+ +..+.........++ ++.++...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~l-------------------DL~t~~i~Q--LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLL-------------------DLATGEITQ--LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEE-------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEE-------------------EcccCEEEE--CccCCCCCccceEEecCCCeEEEEEC
Confidence 57899987776665 777777755 778888665 322221222233344 66665554
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCeEEEEEc--CCCeEEEEe-----------------------CCCcEEEEeCCCCce
Q 005342 524 GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGF-----------------------DDSSILVHCPCTKKT 578 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s--pdg~l~~gs-----------------------~dg~I~iwd~~~~~~ 578 (701)
+..++-.|+++.+....+..+...+-...|. .|+..++|. -.+.|.-.|+.+|+.
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 6789999999988766666566655555554 334223222 112466678888876
Q ss_pred EEeecCCCCCeEEEEEec-CCCEEEEEeC---CC-eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 579 KAKLKGHQNRITCLAYSL-SLNVLVSSGA---DA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 579 ~~~l~~h~~~V~~v~~sp-dg~~l~s~s~---D~-~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
...+. -...+.-+.||| |...|+.|-+ |. .-|||-+.+... ...++.. ... ...+..=-|.|||..+.
T Consensus 181 ~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~---~~~--~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 181 KVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHR---RME--GESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS------T--TEEEEEEEE-TTSS-EE
T ss_pred eEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeec---CCC--CcccccccccCCCCEEE
Confidence 55554 456788899999 4556666543 22 135565543211 1123321 111 15566777999998876
Q ss_pred E-E-----ecCeEEEEECCCCceee
Q 005342 654 S-I-----HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 654 s-g-----~Dg~I~iwd~~~g~~~~ 672 (701)
- + .+..|.-+|+.+++...
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceE
Confidence 5 3 24467788898886543
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.83 Score=46.90 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=72.0
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--C----ce-EEeecCCCCCeEEEEEe
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--K----KT-KAKLKGHQNRITCLAYS 595 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--~----~~-~~~l~~h~~~V~~v~~s 595 (701)
|.++.+|. .+..++.+..+-..-+.++||||+ ++++=+..+.|+-|++.. + +. ...+..+.+..-.++..
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 44555554 455666655544455899999999 455555568898887752 2 11 11122234556667788
Q ss_pred cCCCEEEEEeCCC-eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEE
Q 005342 596 LSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS 654 (701)
Q Consensus 596 pdg~~l~s~s~D~-~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~s 654 (701)
.+|.+-+++-.+| .|.+|+.. |+++....+. . ..+++++|- |+.+.|.+
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP---V------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEECC---C------CCCccceEeCCCcCEEEE
Confidence 8888765444444 99999999 6544322222 1 446777774 56555554
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.69 E-value=0.085 Score=44.43 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=66.5
Q ss_pred eEEEEec------CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEe
Q 005342 509 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 581 (701)
Q Consensus 509 v~~l~~s------~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~ 581 (701)
|+++++. .+.|++|+ |..|++|+-. ..+..+. ....+++++-...+.++.+..+|+|-+|+.... +-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eee
Confidence 4555555 25688888 9999999853 5667776 566788887777678899999999999985332 333
Q ss_pred ecCCCCCeEEEEEec-C--C-CEEEEEeCCCeEE
Q 005342 582 LKGHQNRITCLAYSL-S--L-NVLVSSGADAQLC 611 (701)
Q Consensus 582 l~~h~~~V~~v~~sp-d--g-~~l~s~s~D~~I~ 611 (701)
.+.. ..++++++.. + | +-|++|=.+|.|-
T Consensus 77 iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3322 3366665543 3 2 2678888888764
No 378
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.62 E-value=0.39 Score=53.26 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=92.6
Q ss_pred CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-----e-EEEEEcCCCeEEEEe---------CCCcEEEEeCCCCceEE
Q 005342 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKA 580 (701)
Q Consensus 517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-----i-~~l~~spdg~l~~gs---------~dg~I~iwd~~~~~~~~ 580 (701)
..++.++ ++.|+-+|.++|+.+..+...... + .+..+.. +.++.++ .+|.++.+|..+|+.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 7778887 999999999999999887643321 1 1222222 3444554 36789999999998876
Q ss_pred eecCCCC--------------------Ce-EEEEEecCCCEEEEEeCCC------------------eEEEEECCCCeee
Q 005342 581 KLKGHQN--------------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKL 621 (701)
Q Consensus 581 ~l~~h~~--------------------~V-~~v~~spdg~~l~s~s~D~------------------~I~vwd~~~g~~~ 621 (701)
.+..... .+ .+.++.+.+..++.++.++ .|.-.|.++|+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6543211 01 1234455556677776554 7999999999755
Q ss_pred eeeeeeecc----CCCCCCCCC-eEEEEEcCCCC---EEEEE-ecCeEEEEECCCCceeeeee
Q 005342 622 CSKFLHSFQ----TGLVPETTI-VNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 622 ~~~~l~~~~----~~~~~~~~~-v~~v~~spdg~---~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
-........ .+.. .+ +..+. .-+|. .++++ .+|.+...|..+|+.+-..+
T Consensus 270 W~~~~~~~~~~~~~~~s---~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 270 WFYQTTPHDLWDYDGPN---QPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEeeCCCCCCcccccCC---CCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 332221000 0110 11 11111 11333 45555 78999999999999877654
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.62 E-value=0.045 Score=61.45 Aligned_cols=149 Identities=8% Similarity=-0.053 Sum_probs=86.9
Q ss_pred CCeEEEEec--CCEEEEEe-------C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 005342 507 DSISCFALR--GSHLFSAS-------G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 565 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~s-------d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d--------- 565 (701)
..+.+.+++ |+.++... | ..|.+++. .+.......+ ...+.-.|+||| .+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356777788 66655432 3 35666675 3333222232 247889999998 66665432
Q ss_pred ---CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE---EECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342 566 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 639 (701)
Q Consensus 566 ---g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v---wd~~~g~~~~~~~l~~~~~~~~~~~~~ 639 (701)
+.+++.++..++... ...+.|..+.|||||..++... +++|++ -....|+.....+.. +..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence 234444554443322 2345799999999999888766 478888 555566422212222 333332 34
Q ss_pred eEEEEEcCCCCEEEEEec--CeEEEEECC
Q 005342 640 VNHIQFHPDQIHLLSIHE--GQIDVYEAP 666 (701)
Q Consensus 640 v~~v~~spdg~~l~sg~D--g~I~iwd~~ 666 (701)
+.++.|.+++.+++...+ ..+...++.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC
Confidence 688999999996644333 334444443
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.61 E-value=0.84 Score=45.10 Aligned_cols=190 Identities=13% Similarity=0.151 Sum_probs=112.4
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEE
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHL 519 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l 519 (701)
..-...+.|..+|..+-+.+.-|.-.+- .+|+.+|+.... .+. ....--.++..++.|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~-------------------~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l 102 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLR-------------------KVDLETGKVLQSVPLP--PRYFGEGITILGDKL 102 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEE-------------------EEETTTSSEEEEEE-T--TT--EEEEEEETTEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEE-------------------EEECCCCcEEEEEECC--ccccceeEEEECCEE
Confidence 3456788888888877777776643332 236677775432 121 222333444555555
Q ss_pred EEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEE
Q 005342 520 FSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITC 591 (701)
Q Consensus 520 ~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~ 591 (701)
.--+ ++...+||..+.+.+.++.- ...-..++ .|| .++.+.....++.+|..+.+..+.+.... ..++-
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 5544 89999999999999988863 34556666 456 66666667799999999888777665422 24566
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC------CCCCCCCCeEEEEEcCCCC-EEEEE
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQI-HLLSI 655 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~------~~~~~~~~v~~v~~spdg~-~l~sg 655 (701)
+.|- +|...|-.=....|..-|..+|+....-.+..+.. .+.+...-.+.|+|.|.+. ++++|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7775 67666655566788889999997554333332211 1111125689999998755 45567
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.53 E-value=0.0071 Score=39.40 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.0
Q ss_pred CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 005342 535 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 572 (701)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd 572 (701)
++....+..|...+.++.|++++ .+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566677788899999999999 999999999999996
No 382
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.52 E-value=1 Score=45.00 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC--CceeEeecCCC---CCCCCEEEEEEecCCC------------EEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDN---SFGGRVVRLIYSHSGD------------FLV 457 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~--~~~~~l~~~~~---~~~~~v~~l~~spdg~------------~l~ 457 (701)
-|.++++|.+..-++...-+...+||....... .+...+++|.. ......+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 689999999999999888899999998621111 12233344321 1234577777775433 357
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCC---CCeEEeecccCCCCCCeE-EEEec----CCEEEEEe--CCeE
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS---SKLVMTNDIAADPKDSIS-CFALR----GSHLFSAS--GGKI 527 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~v~-~l~~s----~~~l~s~s--dg~I 527 (701)
.++.||+|.-|.... ++. ...++ +.......|+ .+++- +.+|..+. .++|
T Consensus 105 f~tEdGTisaW~p~v-----------------~~t~~~~~~~~---~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 105 FVTEDGTLSGWAPAL-----------------GTTRMTRAEIV---VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred EEeCCceEEeecCcC-----------------CcccccccEEE---EccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 778889999885421 111 11111 1111122222 23333 56777776 6888
Q ss_pred EEEeCCCCcEEEEecC-CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342 528 SIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~ 606 (701)
.++|-. ...+.. .+ ...+-.-.-+.|-+.... .+.+++-=.. -.++++.=+.|..
T Consensus 165 DVFd~~-f~~~~~-~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~-------------------qd~~~~d~v~G~G 220 (336)
T TIGR03118 165 DVFKGS-FRPPPL-PGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQ-------------------QDADRNDEVAGAG 220 (336)
T ss_pred EEecCc-cccccC-CCCccCCCCCCCCCCcceEEE---CCeEEEEEEe-------------------cCCcccccccCCC
Confidence 888753 222211 10 001100011222211111 1223321100 0122222233444
Q ss_pred CCeEEEEECCCCeeeeeeeeeec-cCCCCCCCCCeEEEEEcCC------CCEEEEE-ecCeEEEEECCCCceeeeeee--
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPD------QIHLLSI-HEGQIDVYEAPTLNHTSQVLL-- 676 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~-~~~~~~~~~~v~~v~~spd------g~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-- 676 (701)
-|.|-+||.... .++.+ ..+.. ..-+.|+..|- |.+|+-- .||+|..+|..+|+.+..+..
T Consensus 221 ~G~VdvFd~~G~------l~~r~as~g~L---NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 221 LGYVNVFTLNGQ------LLRRVASSGRL---NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred cceEEEEcCCCc------EEEEeccCCcc---cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 456666666542 11111 11222 44566766553 4555543 699999999999998877765
Q ss_pred --------eeEEEEEeeEEeeeecceEEEEeC
Q 005342 677 --------ISHIMFVQIVVKFHSFKFFYVAVG 700 (701)
Q Consensus 677 --------i~~~~fs~~~~~f~~~~~~~~~~~ 700 (701)
..+++|-..... ......|+++|
T Consensus 292 G~pi~i~GLWgL~fGng~~~-~~~ntLyFaAG 322 (336)
T TIGR03118 292 NHPVKVDGLWSLTFGNGVSG-GSANYLYFTAG 322 (336)
T ss_pred CCeEEecCeEEeeeCCCcCC-CCcceEEEEeC
Confidence 567777543322 23356777776
No 383
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.0056 Score=67.43 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=78.0
Q ss_pred CCEEEEEe-----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe
Q 005342 516 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (701)
Q Consensus 516 ~~~l~s~s-----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V 589 (701)
..++++++ .|.|.||- ++|++.+... .+-.+++++|+|.. .++.|-+-|.+.+|...+.+.-.....|..+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 44555443 47888874 3666544333 23346789999999 99999999999999987776655556699999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 590 TCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 590 ~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
..+.|||+|..++|+..-|.+.+|...
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999876
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.76 Score=45.21 Aligned_cols=231 Identities=8% Similarity=0.011 Sum_probs=120.5
Q ss_pred eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCC-----CcEEEE
Q 005342 345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSL-----EKSVNL 419 (701)
Q Consensus 345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d-----~~v~iw 419 (701)
...++|..+.+.+.++ ... .+..+.|| =.|||||.+|...-+| |.|-+|
T Consensus 92 f~~vfD~~~~~~pv~~----------~s~-----------~~RHfyGH-----Gvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 92 FAMVFDPNGAQEPVTL----------VSQ-----------EGRHFYGH-----GVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred eEEEECCCCCcCcEEE----------ecc-----------cCceeecc-----cccCCCCcEEEeecCCCCCCCceEEEE
Confidence 4566788877776663 111 22334455 3599999999987544 678899
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE-ecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW-KWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw-d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
|... ...++- .+..|.-....+.|.+||+.++.+.. -|..- |....+. .-....-+..+.|..+|.++.
T Consensus 146 d~r~-----~fqrvg-E~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~l--NldsMePSlvlld~atG~lie 215 (366)
T COG3490 146 DARE-----GFQRVG-EFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTEL--NLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred eccc-----ccceec-ccccCCcCcceeEEecCCcEEEEeCC--ceecccccCcccc--chhhcCccEEEEeccccchhh
Confidence 9862 111211 23345666678899999998776543 33332 2111100 000001124455667777654
Q ss_pred ecccC--CCCCCeEEEEec-CCEEEEEe--CCeE-----EEEeCCCCcEEEEecCC-------CCCeEEEEEcCCC-eEE
Q 005342 499 NDIAA--DPKDSISCFALR-GSHLFSAS--GGKI-----SIFSLETFQTLATFANP-------PPIATYFILLPQD-LFA 560 (701)
Q Consensus 499 ~~~~~--~~~~~v~~l~~s-~~~l~s~s--dg~I-----~iwd~~~~~~~~~~~~~-------~~~i~~l~~spdg-~l~ 560 (701)
+...+ .+.-.|..++.. +..+..|+ .|.- -+=-...++.+.-+... ...|-+++.+.+. +++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 32111 233445566665 33333332 2210 00011123333322211 2356788888766 666
Q ss_pred EEeCCC-cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 561 FGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 561 ~gs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
..+-.| ...+||..+|.++..-.-- .+..+ -+...=++..|.+|.|..+.-
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~l~--daaGv--a~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAALP--DAAGV--AAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEeccccc--ccccc--eeccCceEEecCCceEEeccc
Confidence 666555 6779999999887643211 11222 233334555667788887743
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.33 E-value=0.65 Score=44.30 Aligned_cols=136 Identities=9% Similarity=0.005 Sum_probs=79.8
Q ss_pred CCeEEEEEcCCC-eEEEEeCC----------CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCCCeEEEE
Q 005342 546 PIATYFILLPQD-LFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVW 613 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~d----------g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D~~I~vw 613 (701)
.....-..+|+| + ..|... |.++.|-. +..+..+.+.-+--+.++|+.+.+.+ +.-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 344566789999 6 444322 23333322 11222222222344678999877744 456677788778
Q ss_pred E--CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEe
Q 005342 614 D--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQ 684 (701)
Q Consensus 614 d--~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~ 684 (701)
| ..+|.....+.+-.+..........--.+++..+|.+.++. ..++|.-.|..+|+.+..+.- |+++||-.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 77775433333322322111000112334456678877776 788999999999999998876 99999964
No 386
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=1.1 Score=50.50 Aligned_cols=144 Identities=8% Similarity=0.008 Sum_probs=72.6
Q ss_pred CCEEEEEe-CC-----eEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCC---------------------
Q 005342 516 GSHLFSAS-GG-----KISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDD--------------------- 565 (701)
Q Consensus 516 ~~~l~s~s-dg-----~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~d--------------------- 565 (701)
|...+.|+ ++ .+..||..+.+-.. .+.........+ .-+| ..+.|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccccc
Confidence 66666666 43 48889987664221 222111111222 2356 66666654
Q ss_pred --CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCC-CeeeeeeeeeeccCCCCCC
Q 005342 566 --SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVG-WKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 566 --g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~ 636 (701)
..+..||..+.+....-.-........+..-+|+..+.||.+ ..+..||..+ .+-....+ ++...
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r--- 503 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRL--- 503 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCccc---
Confidence 247788988765432211111111111222356666667654 2467899887 43222222 22111
Q ss_pred CCCeEEEEEcCCCCEEEEE-ecC--eEEEEECCCCce
Q 005342 637 TTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNH 670 (701)
Q Consensus 637 ~~~v~~v~~spdg~~l~sg-~Dg--~I~iwd~~~g~~ 670 (701)
.....+.+ +|+..++| .|+ ++..||+.+.+-
T Consensus 504 -~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 504 -SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred -ccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 22222222 56766675 566 688888877764
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.09 E-value=0.37 Score=48.95 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-----------
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----------- 582 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l----------- 582 (701)
++.|+.|+ +| +.+++.........+. +...|..+...|+- .+++- .|+.++++++........-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence 77888999 66 9999993333222222 23349999999877 44333 3499999998764433311
Q ss_pred ---cCCCCCeEEEE--EecCC-CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342 583 ---KGHQNRITCLA--YSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 656 (701)
Q Consensus 583 ---~~h~~~V~~v~--~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~ 656 (701)
......+...+ -.+.+ .+|+.+ ...+|.+|............++++.-. ..+.+++|. ++.++.|.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01223444444 11233 345444 455898888876311100122212111 678899998 66788886
Q ss_pred cCeEEEEECCCCceee
Q 005342 657 EGQIDVYEAPTLNHTS 672 (701)
Q Consensus 657 Dg~I~iwd~~~g~~~~ 672 (701)
.+...+.|+.++....
T Consensus 156 ~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSE 171 (275)
T ss_pred CCceEEEecCCCCceE
Confidence 6678889998776543
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.08 E-value=0.081 Score=59.48 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=76.2
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs------~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~ 594 (701)
+|.+.-.+-..-..+.-..+....+.+.+++||| .++... .|. .|++++. .+.......+. ..++-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceE
Confidence 6666554432222222222233467899999999 665544 233 5666665 33333333333 3778899
Q ss_pred ecCCCEEEEEeCCC-eEEEEECCCCeeeeeeeeeeccCCCC--CCCCCeEEEEEcCCCCEEEEEecCeEEE---EECCCC
Q 005342 595 SLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTL 668 (701)
Q Consensus 595 spdg~~l~s~s~D~-~I~vwd~~~g~~~~~~~l~~~~~~~~--~~~~~v~~v~~spdg~~l~sg~Dg~I~i---wd~~~g 668 (701)
+|||..+++.++.. .+++.+-.....+.... +..+.. .....|..+.|||||..++.-.++.|++ -....|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~---vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTP---VDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG 481 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEe---ccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC
Confidence 99999888776432 23333322111111111 111100 0016799999999999998865677777 444556
Q ss_pred c
Q 005342 669 N 669 (701)
Q Consensus 669 ~ 669 (701)
+
T Consensus 482 ~ 482 (591)
T PRK13616 482 Q 482 (591)
T ss_pred c
Confidence 4
No 389
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.99 E-value=0.23 Score=51.76 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=80.0
Q ss_pred CeEEEEeCCCC-----c--EEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc-eEEeecC-CCCCeEEEEEe
Q 005342 525 GKISIFSLETF-----Q--TLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLKG-HQNRITCLAYS 595 (701)
Q Consensus 525 g~I~iwd~~~~-----~--~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~-~~~~l~~-h~~~V~~v~~s 595 (701)
|.|.++++... + .+.... ..++|++++-- +|.++++. ++.|++|++...+ ....-.. ....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 78999999874 2 222222 46788888876 33544443 4789999998877 4443221 2224555544
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
.+++++.|.....+.++....... ....+. -. ... ..++++.|-+|++.++++ .+|.+.++...
T Consensus 138 -~~~~I~vgD~~~sv~~~~~~~~~~-~l~~va-~d-~~~---~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 -FKNYILVGDAMKSVSLLRYDEENN-KLILVA-RD-YQP---RWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -ETTEEEEEESSSSEEEEEEETTTE--EEEEE-EE-SS----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred -cccEEEEEEcccCEEEEEEEccCC-EEEEEE-ec-CCC---ccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 466999999888888775543111 112222 11 111 678999998777777776 68999998875
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.90 E-value=0.93 Score=51.05 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=110.2
Q ss_pred CCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-CcEEEEecCCCCc
Q 005342 403 DADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ 475 (701)
Q Consensus 403 dg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~ 475 (701)
.+..++.|+.+ ..+..+|.. .+....+. +.. ....-.+++. -+|...++||.| |.-.+=
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~----~~~w~~~a-~m~-~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~------- 349 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPK----TNEWSSLA-PMP-SPRCRVGVAV-LNGKLYVVGGYDSGSDRLS------- 349 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCC----cCcEeecC-CCC-cccccccEEE-ECCEEEEEccccCCCcccc-------
Confidence 34566667665 356677776 44333322 111 1222333333 345667778777 322211
Q ss_pred cccccccceeeEEeeCCCCeEEeecccC--CCCCCeEEEEec-CCEEEEEe-CC-----eEEEEeCCCCcEEEEecCCCC
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR-GSHLFSAS-GG-----KISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~l~~s-~~~l~s~s-dg-----~I~iwd~~~~~~~~~~~~~~~ 546 (701)
++..||+.+++-.. +.+ ...... .++.- |...++|+ || ++-.||..+.+--..-. ...
T Consensus 350 ---------~ve~YD~~~~~W~~--~a~M~~~R~~~-~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~ 416 (571)
T KOG4441|consen 350 ---------SVERYDPRTNQWTP--VAPMNTKRSDF-GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLT 416 (571)
T ss_pred ---------eEEEecCCCCceec--cCCccCccccc-eeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCc
Confidence 12244666665221 111 111111 22222 66777777 64 57788877654211111 111
Q ss_pred CeEEE-EEcCCC-eEEEEeCCC------cEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEE
Q 005342 547 IATYF-ILLPQD-LFAFGFDDS------SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLC 611 (701)
Q Consensus 547 ~i~~l-~~spdg-~l~~gs~dg------~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~ 611 (701)
..... ...-+| ..++|+.++ ++..||..+++.... +..-..... ++ .-++...+.||.|+ +|.
T Consensus 417 ~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 417 RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEE
Confidence 22222 223356 777777665 578899888755332 211111111 22 23677777787776 378
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEE-ecC-----eEEEEECCCCce
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEG-----QIDVYEAPTLNH 670 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg-~Dg-----~I~iwd~~~g~~ 670 (701)
.||..+.+-.....+. .+...+.... +++..++| .|| +|..||..+.+-
T Consensus 495 ~ydp~~~~W~~v~~m~----------~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMT----------SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEcCCCCceeEcccCc----------cccccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 8888885422211111 1112222222 34444554 554 578888877654
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.042 Score=62.71 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=70.1
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 549 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
..++..-.+ .++.|+..|.+-..|+...-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++... .+
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~--~i 168 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK--VI 168 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee--ee
Confidence 333333345 899999999999988765311 11111134699999999999999999999999999999975432 22
Q ss_pred eeccCCCCCCCCCeEEEEEcCCCCEEEEEe-cCeEEEEE
Q 005342 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYE 664 (701)
Q Consensus 627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-Dg~I~iwd 664 (701)
. .+..+ ...|..+.+..++..+++++ .|. +|.
T Consensus 169 ~---e~~ap-~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 169 T---EHGAP-VTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred e---ecCCc-cceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 2 12111 14455555666666677764 443 454
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.047 Score=62.40 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred EecCCEEEEEe-CCeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCe
Q 005342 513 ALRGSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 589 (701)
Q Consensus 513 ~~s~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V 589 (701)
+.-+..++.|+ .|.+-..|....- ....=....++|++++|+.+| .++.|-.+|.|.+||+..++.++.+..|..+.
T Consensus 96 a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 96 AIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 33366777887 6888888875431 112212236789999999999 99999999999999999999999888776665
Q ss_pred EEE---EEecCCCEEEEEeCCCeEEEEEC
Q 005342 590 TCL---AYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 590 ~~v---~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
+.+ .+..++..+.++...|. +|..
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555 34445666777777775 5543
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.49 E-value=1.9 Score=45.53 Aligned_cols=129 Identities=18% Similarity=0.056 Sum_probs=62.1
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCC--eEEEEEc--CCC--eEEEEeCCCcEEEEeC-CCCce----EEeec-----C---
Q 005342 524 GGKISIFSLETFQTLATFANPPPI--ATYFILL--PQD--LFAFGFDDSSILVHCP-CTKKT----KAKLK-----G--- 584 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~s--pdg--~l~~gs~dg~I~iwd~-~~~~~----~~~l~-----~--- 584 (701)
..++++||+.+.+.++++.-.... ...+.|. |+. -++.+.-.++|..|-. ..++. +-.+. +
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999999998754332 3445554 444 2333334556666544 33321 11111 1
Q ss_pred ---------CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCC------------CCCCCeEE
Q 005342 585 ---------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLV------------PETTIVNH 642 (701)
Q Consensus 585 ---------h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~------------~~~~~v~~ 642 (701)
-..-|+.+..|.|.++|..+. .+|.|+.||+..-.. .+...++.-|.. .-.+...-
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~--Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN--PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS---EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC--CcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 124579999999999887555 589999999987321 111111111110 00133467
Q ss_pred EEEcCCCCEEEE
Q 005342 643 IQFHPDQIHLLS 654 (701)
Q Consensus 643 v~~spdg~~l~s 654 (701)
+..|-||+.|..
T Consensus 379 vqlS~DGkRlYv 390 (461)
T PF05694_consen 379 VQLSLDGKRLYV 390 (461)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEccCCeEEEE
Confidence 889999998875
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=0.046 Score=51.82 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=68.8
Q ss_pred CCEEEEEe-CCeEEEEeCCCC-cEEEEecCCCCCe-EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeE
Q 005342 516 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 590 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~-~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~ 590 (701)
+..+++|+ +|.|.+|+.... .....+......| +.+....++ +..++..||.|+.|++.-++.+...-+|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56677777 999999987521 1111122122233 444444555 88999999999999998888877666676 4555
Q ss_pred EEEEecCCCEEEEE--eCCCeEEEEECCC
Q 005342 591 CLAYSLSLNVLVSS--GADAQLCVWDAVG 617 (701)
Q Consensus 591 ~v~~spdg~~l~s~--s~D~~I~vwd~~~ 617 (701)
....+..+.+++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55556666677766 7777777777765
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.43 E-value=3.6 Score=42.05 Aligned_cols=138 Identities=11% Similarity=0.049 Sum_probs=71.5
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
......+..+..++|| ++++++......-||--...-...-+.-...|.++.|+|++.+.+. ...|.|+.=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3445678889999999 8888766555567774432222222334578999999999886553 4888888887322111
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------eeEEEEEee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------ISHIMFVQI 685 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------i~~~~fs~~ 685 (701)
.-.+.+..+... ...+..++|.+++...++|..|++ +.....|+.-+.-+. .+.+.|.+.
T Consensus 220 ~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 220 TWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred ccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 111111101111 145899999999999888888865 455566665444432 566666543
No 396
>PRK10115 protease 2; Provisional
Probab=95.43 E-value=7 Score=45.31 Aligned_cols=229 Identities=7% Similarity=-0.014 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------
Q 005342 395 SRESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------ 463 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------ 463 (701)
+..+.|+|||++|+.+... ..+++-|+. ++....-.+ ...-..++|++|++.|+....+.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~----tg~~l~~~i-----~~~~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE----TGNWYPELL-----DNVEPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECC----CCCCCCccc-----cCcceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 7788999999999876432 346677775 443111011 11115699999999777766532
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCC----eEEeecccCCCCCCeE-EEEec--CCEEEEEe----CCeEEEEeC
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSK----LVMTNDIAADPKDSIS-CFALR--GSHLFSAS----GGKISIFSL 532 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~v~-~l~~s--~~~l~s~s----dg~I~iwd~ 532 (701)
.+..+ +..++ .++. ........ ....+ +++++..+ ++.+.+++.
T Consensus 200 ~v~~h---------------------~lgt~~~~d~lv~----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 200 QVWRH---------------------TIGTPASQDELVY----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEE---------------------ECCCChhHCeEEE----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 33333 33333 2331 11122222 22223 56554433 368999994
Q ss_pred C--CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeC--CCcEEEEeCCC-CceEEeecCC-C-CCeEEEEEecCCCEEEE
Q 005342 533 E--TFQTLATFANPPPIATYFILLPQD--LFAFGFD--DSSILVHCPCT-KKTKAKLKGH-Q-NRITCLAYSLSLNVLVS 603 (701)
Q Consensus 533 ~--~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~--dg~I~iwd~~~-~~~~~~l~~h-~-~~V~~v~~spdg~~l~s 603 (701)
. ++.....+.........+. +..+ ++.+... ...|...++.+ ++. ..+..+ . ..|..+.++ .+.++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~ 331 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVE 331 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEE
Confidence 3 3432222322223333333 3334 4444322 22455555542 322 233334 3 367778887 3345666
Q ss_pred EeCCCeEEEE--ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc--CCCC-EEEE--E--ecCeEEEEECCCCc
Q 005342 604 SGADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQI-HLLS--I--HEGQIDVYEAPTLN 669 (701)
Q Consensus 604 ~s~D~~I~vw--d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s--pdg~-~l~s--g--~Dg~I~iwd~~~g~ 669 (701)
...++.-+++ +..++. ...+. + ... ..+..+.++ +++. ++++ + .-+.+..+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~~---~~~l~-~-~~~----~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTRE---VIGIA-F-DDP----AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCCc---eEEec-C-CCC----ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 6767765555 443322 11111 1 111 233334455 4444 4443 3 45779999988765
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.37 E-value=7.2 Score=45.10 Aligned_cols=251 Identities=11% Similarity=0.020 Sum_probs=130.2
Q ss_pred eEEEEEcCCC------CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 395 SRESTSLPDA------DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 395 V~~l~~spdg------~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
|.|+.++|-| +.++.|..+..+.+--... +........++...-+..|.-..+-.|..+|.++..||.+.-+
T Consensus 533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p--d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~f 610 (1096)
T KOG1897|consen 533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP--DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYF 610 (1096)
T ss_pred eEEEecccCCCCCCcceEEEEEeecceEEEEEECC--CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEE
Confidence 8899999753 2677787666555433320 0111111112222234556666777788999999999999988
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEeCCeEEEEeCCCCcEEEE-ecCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLAT-FANP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~sdg~I~iwd~~~~~~~~~-~~~~ 544 (701)
.+ |..+|++....-..-...++.--.|+ ++.+++++|.-..+|.- +++.+.+ +. -
T Consensus 611 v~-------------------d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls-~ 669 (1096)
T KOG1897|consen 611 VL-------------------DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS-L 669 (1096)
T ss_pred EE-------------------EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc-h
Confidence 65 55555533210000123455555555 66777777766666655 3333322 21 1
Q ss_pred CCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecCCCEEEEEeCC------------
Q 005342 545 PPIATYFILLPQD---LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------------ 607 (701)
Q Consensus 545 ~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------------ 607 (701)
+..-.-+.|+.++ .++++.. +.+.+.-+..- -.+++..-| .....+++.+....+++.+..
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcc
Confidence 1111122233333 4454433 45555544432 123343323 345677777744444443321
Q ss_pred --CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CCEEEEEe-----------cCeEEEEECCCCceeee
Q 005342 608 --AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 608 --~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~~l~sg~-----------Dg~I~iwd~~~g~~~~~ 673 (701)
..++++|-++-+..+...+. .... ...+.++.|..| +.++++|. .|.|.|+.+..++.++.
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~---~~E~--~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFE---RNET--ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred eEEEEEEecCCceeEEeecccc---ccce--eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 24777777775433222222 1110 144666779888 77777651 36789998877544444
Q ss_pred ee
Q 005342 674 VL 675 (701)
Q Consensus 674 l~ 675 (701)
..
T Consensus 823 v~ 824 (1096)
T KOG1897|consen 823 VA 824 (1096)
T ss_pred ee
Confidence 43
No 398
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.66 Score=43.47 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=102.6
Q ss_pred EEEec-CCEEEEEe---CCeEEEEeCCCCcEEEEecCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC
Q 005342 511 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 584 (701)
Q Consensus 511 ~l~~s-~~~l~s~s---dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~ 584 (701)
.+... |.++.+.+ ...|++||+.+|+.+..-.-....+. .+.-..|.+.+....+|.-..+|.++.+.+..+..
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 44555 65566655 36899999999987765442222222 12222233445567889999999999888877763
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw 663 (701)
.+.-+.++ .|+.-|+.++...+++.-|.++-.......+. ..+... ..++.+.|- ||...|-- .+..|...
T Consensus 130 -~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv---~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 130 -EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPV---SKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred -CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeec---ccccceeee-ccEEEEeeeeecceEEE
Confidence 34445554 45665666666678888888774332211111 222111 445556664 45544433 56678888
Q ss_pred ECCCCceeeeeee----------------eeEEEEEeeE
Q 005342 664 EAPTLNHTSQVLL----------------ISHIMFVQIV 686 (701)
Q Consensus 664 d~~~g~~~~~l~~----------------i~~~~fs~~~ 686 (701)
|.++|+.+..+.. .++++|.|..
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~ 240 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ 240 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcC
Confidence 8999998877654 5677887765
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.36 E-value=4.6 Score=42.78 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=92.7
Q ss_pred CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-------CCCCCeEEEEec-CCEEEEE
Q 005342 452 SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-------DPKDSISCFALR-GSHLFSA 522 (701)
Q Consensus 452 dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~v~~l~~s-~~~l~s~ 522 (701)
+.++|+..+- ++.|.|.|+.+. +..-++... +.. +-..+-+.-+.- |++++++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~d-----------------Pr~P~l~Kv-Ie~~ev~~k~g~s~PHT~Hclp~G~imIS~ 147 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTD-----------------PRKPRLHKV-IEPEEVFEKTGLSRPHTVHCLPDGRIMISA 147 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S------------------TTS-EEEEE-E-HHHHHHHH-EEEEEEEEE-SS--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCC-----------------CCCCceEee-eCHHHHHhhcCCCCCceeeecCCccEEEEe
Confidence 4567888774 789999988653 333332211 110 001111122222 6677765
Q ss_pred e---C----CeEEEEeCCCCcEEEEecCC---CCCeEEEEEcCCC-eEEEEe--------------------CCCcEEEE
Q 005342 523 S---G----GKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGF--------------------DDSSILVH 571 (701)
Q Consensus 523 s---d----g~I~iwd~~~~~~~~~~~~~---~~~i~~l~~spdg-~l~~gs--------------------~dg~I~iw 571 (701)
- + |.+.++|-++.......... ...-..+-+.|.. .+++.. ...++++|
T Consensus 148 lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW 227 (461)
T PF05694_consen 148 LGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW 227 (461)
T ss_dssp EEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred ccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence 2 1 67889998888877766532 2233667777876 666553 23489999
Q ss_pred eCCCCceEEeecCCCC--CeEEEEEe--cCCCE-EEEEeCCCeEEEEEC-CCCeeeeeeeeeeccCCC-----CCC----
Q 005342 572 CPCTKKTKAKLKGHQN--RITCLAYS--LSLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL-----VPE---- 636 (701)
Q Consensus 572 d~~~~~~~~~l~~h~~--~V~~v~~s--pdg~~-l~s~s~D~~I~vwd~-~~g~~~~~~~l~~~~~~~-----~~~---- 636 (701)
|+.+.+.++++.-... .+..+.|. |+..+ ++.+.-.++|..|-. ..|+-...+.+. ++... .+.
T Consensus 228 D~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 228 DWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGG
T ss_pred ECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCcccccccccc
Confidence 9999999998874332 34456665 44443 333444556655554 455433333333 33211 000
Q ss_pred ----CCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342 637 ----TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 637 ----~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
..-|+.|..|.|.++|..+ .+|.|+-||+..
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 1457999999999999986 599999999965
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=3.5 Score=41.10 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=116.0
Q ss_pred CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C
Q 005342 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 516 (701)
Q Consensus 438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~ 516 (701)
.+-...+.++.|+|+.+.|++......-.|+ =...|.++.. ++-..-...-.+.+. +
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE---------------------lt~~Gdlirt-iPL~g~~DpE~Ieyig~ 139 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE---------------------LTKEGDLIRT-IPLTGFSDPETIEYIGG 139 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE---------------------EecCCceEEE-ecccccCChhHeEEecC
Confidence 3455669999999999999998887777776 2245554433 111122344567777 5
Q ss_pred CEEEEEe--CCeEEEEeCCCCcEEE-----Ee-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEE
Q 005342 517 SHLFSAS--GGKISIFSLETFQTLA-----TF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKA 580 (701)
Q Consensus 517 ~~l~s~s--dg~I~iwd~~~~~~~~-----~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~---~~~ 580 (701)
+.++.+. ++.+.++.+.....+. .+ .......-.++|+|.. .+..+-+..-+.||....+. .++
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH 219 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence 5555555 7888887765442211 11 1114456889999999 77777777766666544221 111
Q ss_pred eecCCC-------CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC---CCeEEEEEcCCC
Q 005342 581 KLKGHQ-------NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET---TIVNHIQFHPDQ 649 (701)
Q Consensus 581 ~l~~h~-------~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~---~~v~~v~~spdg 649 (701)
....+. ..|.++.|++ .+.+++-+.+++.+.-.|....- + ..+. +..|..+-. ...-.|+..++|
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~--~~ls-L~~g~~gL~~dipqaEGiamDd~g 295 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV-I--ELLS-LTKGNHGLSSDIPQAEGIAMDDDG 295 (316)
T ss_pred cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe-e--eeEE-eccCCCCCcccCCCcceeEECCCC
Confidence 111121 2467788887 56677778888888888877642 1 2222 222321101 223467777777
Q ss_pred CEEEEEecCeEE
Q 005342 650 IHLLSIHEGQID 661 (701)
Q Consensus 650 ~~l~sg~Dg~I~ 661 (701)
..-++|.-+-.+
T Consensus 296 ~lYIvSEPnlfy 307 (316)
T COG3204 296 NLYIVSEPNLFY 307 (316)
T ss_pred CEEEEecCCcce
Confidence 766666544333
No 401
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=1.5 Score=43.26 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=89.1
Q ss_pred EEEec---CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCC--eEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCC-
Q 005342 511 CFALR---GSHLFSAS--GGKISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK- 576 (701)
Q Consensus 511 ~l~~s---~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~- 576 (701)
.++++ ..-++.+- .....++|..+.+...++...+.. .-.=.||||| ++...-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 44555 44455555 345678898887766655433222 1234689999 66554333 57999998854
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~------------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
+.+.++.+|.-....+.|.+||+.++.+.. .-++.+-|..+|+.+....+. -...+ .
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~----l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQ----L 226 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhh----c
Confidence 557788888878889999999998876543 124556666666554433332 11122 6
Q ss_pred CeEEEEEcCCCCEEEE
Q 005342 639 IVNHIQFHPDQIHLLS 654 (701)
Q Consensus 639 ~v~~v~~spdg~~l~s 654 (701)
.|..++..+||..++.
T Consensus 227 SiRHld~g~dgtvwfg 242 (366)
T COG3490 227 SIRHLDIGRDGTVWFG 242 (366)
T ss_pred ceeeeeeCCCCcEEEE
Confidence 7888888888887765
No 402
>PHA02713 hypothetical protein; Provisional
Probab=95.28 E-value=1 Score=50.85 Aligned_cols=90 Identities=6% Similarity=0.000 Sum_probs=48.6
Q ss_pred eEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCC-CceE--EeecCCCCCeEEEE
Q 005342 526 KISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT-KKTK--AKLKGHQNRITCLA 593 (701)
Q Consensus 526 ~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~-~~~~--~~l~~h~~~V~~v~ 593 (701)
.+..||..+.+-. ..+...... .+++ .-+| ..+.|+.+ ..+..||..+ .+.. ..+.........++
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 4677887765432 222111111 1222 3345 55556543 2467899887 4433 33332323333333
Q ss_pred EecCCCEEEEEeCCC--eEEEEECCCCe
Q 005342 594 YSLSLNVLVSSGADA--QLCVWDAVGWK 619 (701)
Q Consensus 594 ~spdg~~l~s~s~D~--~I~vwd~~~g~ 619 (701)
+ +|+..+.||.|+ .+..||..+++
T Consensus 511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E--CCEEEEEeeecceeehhhcCccccc
Confidence 3 778888899888 78888888753
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.21 E-value=0.065 Score=37.68 Aligned_cols=33 Identities=15% Similarity=0.657 Sum_probs=29.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
...|..++|+|...+||.++.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 357999999999999999999999999999 543
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.21 E-value=4.7 Score=45.05 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=65.1
Q ss_pred CCeEEEEeCCCCcEEEEecCCCC-------------------------------Ce-EEEEEcCCC-eEEEEeCC-----
Q 005342 524 GGKISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD----- 565 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~-------------------------------~i-~~l~~spdg-~l~~gs~d----- 565 (701)
+|.|.-+|.++|+.+..+..... .+ ..++++|.. ++..+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 47899999999998876542211 11 234677766 55555422
Q ss_pred C-----------cEEEEeCCCCceEEeecC--CCC-------CeEEEEEecCCC---EEEEEeCCCeEEEEECCCCeee
Q 005342 566 S-----------SILVHCPCTKKTKAKLKG--HQN-------RITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 566 g-----------~I~iwd~~~~~~~~~l~~--h~~-------~V~~v~~spdg~---~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
+ .|.-.|++||+..-.++. |.. ...-+....+|+ .++.+..+|.+++.|..+|+.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 677889999998776664 221 111122324665 7889999999999999999864
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.15 E-value=0.73 Score=51.54 Aligned_cols=115 Identities=8% Similarity=0.035 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCeEEEEe-CCCcEEEEeCCCCceEEeec-CCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCC----
Q 005342 546 PIATYFILLPQDLFAFGF-DDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVG---- 617 (701)
Q Consensus 546 ~~i~~l~~spdg~l~~gs-~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~s--pdg~~l~s~s~D~~I~vwd~~~---- 617 (701)
..++-+.-|.-+.+|... ....+.|||.+.+.....-. ...+.|.++.|. |||+.+.+.|..+.|.++.-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555555444444 44589999998886544322 246789999886 5899999999999999986421
Q ss_pred -Cee--eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 618 -WKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 618 -g~~--~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
..+ ...+.+. +. .+++ .+|....|.++|.+++ |.++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~-i~-~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKID-IS-SHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEE-ee-cCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 111 1112222 22 3433 6789999999987554 45566777764
No 406
>PHA03098 kelch-like protein; Provisional
Probab=95.15 E-value=2.3 Score=47.86 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCEEEEEe-C------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC--------cEEEEeCCCCceE
Q 005342 516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--------SILVHCPCTKKTK 579 (701)
Q Consensus 516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg--------~I~iwd~~~~~~~ 579 (701)
+...+.|+ + +.+..||..+++-...-..+.......+...++ .++.|+.++ .+.+||..+++..
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 66666665 2 468899987764322111011111111223345 555555322 3889998877543
Q ss_pred Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342 580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK 619 (701)
Q Consensus 580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~ 619 (701)
.. +.........+. .+++.++.|+.+ +.|.+||..+..
T Consensus 470 ~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 470 ELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred eCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32 111111112222 267777777654 478889888753
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=4.2 Score=40.53 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|+++.|+|+.+.|++......-.+|=.. .|+... ++|..+ -.....+.|..+|++.++--.++.+.+..+....
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~----~Gdlir-tiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTK----EGDLIR-TIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEec----CCceEE-Eecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 9999999999999988887777776544 555443 234433 3445678888888877666668888888663321
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEEecCC----
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFANP---- 544 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~~---- 544 (701)
. +.+..+.++.-... .......-.++|+ ++.+..+- -.-+.||...... .++....+
T Consensus 162 ~------------~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 162 T------------VISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred c------------EEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 0 00111111100000 1114556788998 66677666 3434444432221 11111111
Q ss_pred ---CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342 545 ---PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK 583 (701)
Q Consensus 545 ---~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~ 583 (701)
-..+.++.|++.. +++.+.+++.+.-.|.. |.++..+.
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 1245777888765 77888888888888854 44454443
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.96 E-value=0.39 Score=51.91 Aligned_cols=146 Identities=8% Similarity=0.018 Sum_probs=88.5
Q ss_pred CCeEEEEec-CCEEEEEe----CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCC-
Q 005342 507 DSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT- 575 (701)
Q Consensus 507 ~~v~~l~~s-~~~l~s~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~- 575 (701)
.++..++|. |+.++-.. +|.+++=|- ..+..| ..|..++|.|-+ -+++......|.+|-+.-
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 378899999 77655432 455554433 233443 368899999864 455666778999998752
Q ss_pred ----CceEEeecCCC-C----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342 576 ----KKTKAKLKGHQ-N----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (701)
Q Consensus 576 ----~~~~~~l~~h~-~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s 646 (701)
++.+..-..+- . --..+.|+|....|+.-.....-.+.++...... .... +. ++ +-|.|.+|.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaD-i~-~~----G~IhCACWT 164 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKAD-IK-TS----GLIHCACWT 164 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEe-cc-CC----ceEEEEEec
Confidence 22222111111 1 1245689999888876555444455666553211 1111 21 22 889999999
Q ss_pred CCCCEEEEE--ecCeEEEEECCC
Q 005342 647 PDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 647 pdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
+||+.|+++ +.=.-+|||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 999998875 444568898643
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.84 E-value=10 Score=43.97 Aligned_cols=243 Identities=12% Similarity=0.046 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|-...+-.|..+|.++..||.+.-+.++.. +++....+ ...-...++.=-.|+..++.-+.+.+|.-..+|.
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~----- 657 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDIN--TGQLSDRK-KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS----- 657 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcc--cceEcccc-ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe-----
Confidence 555666677899999999999987766521 33222111 0011345666666776666555566666666663
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCc--EEEEecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~--~~~~~~~~~~~i~~ 550 (701)
.+++++...+.-..-..+..+.-+ +..++++..+.+++.-+..-+ .++++. .......
T Consensus 658 -----------------~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prr 719 (1096)
T KOG1897|consen 658 -----------------SNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRR 719 (1096)
T ss_pred -----------------cCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhh
Confidence 223322110100000111111111 556777776777776654332 234443 3345567
Q ss_pred EEEcCCC-eEEEEeCC--------------CcEEEEeCCCCceEEeecCC--C--CCeEEEEEecC-CCEEEEEeC----
Q 005342 551 FILLPQD-LFAFGFDD--------------SSILVHCPCTKKTKAKLKGH--Q--NRITCLAYSLS-LNVLVSSGA---- 606 (701)
Q Consensus 551 l~~spdg-~l~~gs~d--------------g~I~iwd~~~~~~~~~l~~h--~--~~V~~v~~spd-g~~l~s~s~---- 606 (701)
+++.+.. .+++.+.- ..++++|-.+.+.++..+-. . -.+.++.|..| +.+++.|..
T Consensus 720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 7777755 44433221 14677887776665433211 1 14555668877 667777653
Q ss_pred ------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342 607 ------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 607 ------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~ 672 (701)
.|.|.|+....+..+ +.+.+.. -.+.+.++.-- +|+ +++|-...|++|++.+++.++
T Consensus 800 de~ep~~GRIivfe~~e~~~L--~~v~e~~-----v~Gav~aL~~f-ngk-llA~In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSL--ELVAETV-----VKGAVYALVEF-NGK-LLAGINQSVRLYEWTTERELR 862 (1096)
T ss_pred CCCCcccceEEEEEEecCCce--eeeeeee-----eccceeehhhh-CCe-EEEecCcEEEEEEccccceeh
Confidence 578888888773221 1111000 01445554322 344 445566789999998775444
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.51 E-value=2.5 Score=40.50 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred EEEEec--CCEEEEE-e-CCeEEEEe--CCCCcE-----EEEecC---C-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 510 SCFALR--GSHLFSA-S-GGKISIFS--LETFQT-----LATFAN---P-PPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 510 ~~l~~s--~~~l~s~-s-dg~I~iwd--~~~~~~-----~~~~~~---~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
..++|+ .+.+... + +-+|.-|| ..+|.. +..++. . ....-.+++..+| +.++....++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 356676 3333333 3 66776666 555542 222221 1 1112345566778 7777778889999999
Q ss_pred CCCceEEeecCCCCCeEEEEEec
Q 005342 574 CTKKTKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 574 ~~~~~~~~l~~h~~~V~~v~~sp 596 (701)
.+|+.+.+++-....|++++|..
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999988888999999964
No 411
>PHA03098 kelch-like protein; Provisional
Probab=94.28 E-value=3.4 Score=46.56 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=69.2
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceEE
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKA 580 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~~~~~~ 580 (701)
+...+.|+ + ..+..||..+++-.. .+...... .+++ .-++ .++.|+.+ ..+..||..+.+...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 66666666 4 357788887664322 11111111 1222 2345 55555532 358899988765432
Q ss_pred e--ecCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 581 K--LKGHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 581 ~--l~~h~~~V~~v~~spdg~~l~s~s~D--------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
. +....... + +...++...+.||.+ ..+.+||..+++-..... ..... .....+.+ +++
T Consensus 421 ~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r----~~~~~~~~--~~~ 489 (534)
T PHA03098 421 GSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPR----INASLCIF--NNK 489 (534)
T ss_pred cCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC---CCccc----ccceEEEE--CCE
Confidence 1 11111111 1 222356666666542 238899988764222111 11111 11122222 566
Q ss_pred EEEEE-e-----cCeEEEEECCCCc
Q 005342 651 HLLSI-H-----EGQIDVYEAPTLN 669 (701)
Q Consensus 651 ~l~sg-~-----Dg~I~iwd~~~g~ 669 (701)
.++.| . .+.+.+||..+.+
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCCE
Confidence 66664 2 2468899987764
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.12 E-value=4.1 Score=40.77 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=87.7
Q ss_pred CeEEEEec--CCEEEEEe--C--CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE-eCCCCceE
Q 005342 508 SISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH-CPCTKKTK 579 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~s--d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iw-d~~~~~~~ 579 (701)
.+.+.+++ |+.++... + ..++++.. +....... ....+...+|++++ ..+....+...+++ +..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 67788888 66665544 4 45555554 33333321 23377888999999 55555555565655 33333221
Q ss_pred E-eecC--CCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCC---C-eeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 580 A-KLKG--HQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVG---W-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 580 ~-~l~~--h~~~V~~v~~spdg~~l~s~s---~D~~I~vwd~~~---g-~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
. .... -.+.|..+.+||||..+|... .++.|+|=-+.. | ......++. +..... ..++.+.|.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-~~~~~~---~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-VAPPLL---SDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-eccccc---CcceeeeecCCC
Confidence 1 1111 112799999999999777554 457888876553 2 111112222 221212 678999999999
Q ss_pred CEEEEE--ecCeEEE-EEC
Q 005342 650 IHLLSI--HEGQIDV-YEA 665 (701)
Q Consensus 650 ~~l~sg--~Dg~I~i-wd~ 665 (701)
.+++.+ .++.+.. ..+
T Consensus 178 ~L~V~~~~~~~~~~~~v~~ 196 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSV 196 (253)
T ss_pred EEEEEeCCCCCceeEEEEc
Confidence 988775 4554444 444
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.05 E-value=0.15 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 577 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~ 577 (701)
...|.+++|+|.. +||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 4578999999999 9999999999999998 444
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.73 E-value=3.5 Score=39.31 Aligned_cols=138 Identities=12% Similarity=-0.026 Sum_probs=82.3
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCC--CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEE---ECCC
Q 005342 549 TYFILLPQDLFAFGFDDSSILVHCPC--TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVW---DAVG 617 (701)
Q Consensus 549 ~~l~~spdg~l~~gs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vw---d~~~ 617 (701)
..++-++.+.+..+...+.|.+|++. ..+...+|..- +.|..+.++..|+||+|--.+ ..+|+| +...
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 44555553333333566789999988 34566677643 789999999999999985432 255665 2221
Q ss_pred --CeeeeeeeeeeccCCCC------------------CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce-ee---e
Q 005342 618 --WKKLCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-TS---Q 673 (701)
Q Consensus 618 --g~~~~~~~l~~~~~~~~------------------~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~-~~---~ 673 (701)
..+.+. + + .||. |...++.+++..|-.--|++|.++.+.+|.+..+.. .. .
T Consensus 100 ~~~~~v~v---R-i-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~ 174 (215)
T PF14761_consen 100 EENSPVRV---R-I-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSF 174 (215)
T ss_pred ccCCcEEE---E-E-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccE
Confidence 111110 0 1 1111 122567888888875567778888999998854433 11 1
Q ss_pred eee-----eeEEEEEeeEEeeeec
Q 005342 674 VLL-----ISHIMFVQIVVKFHSF 692 (701)
Q Consensus 674 l~~-----i~~~~fs~~~~~f~~~ 692 (701)
+.- +-...|.|..+.|...
T Consensus 175 lDFe~~l~~~~~~~~p~~v~ic~~ 198 (215)
T PF14761_consen 175 LDFERSLIDHIDNFKPTQVAICEG 198 (215)
T ss_pred EechhhhhheecCceEEEEEEEee
Confidence 111 5566777777777654
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.72 E-value=2.6 Score=47.59 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=95.2
Q ss_pred CCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 403 DADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 403 dg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
+|...++||.| .++..||.. .++...+. +.. ..+...-.-.-+|...++||.||.-.+=
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~----~~~W~~~a-~M~--~~R~~~~v~~l~g~iYavGG~dg~~~l~-------- 396 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPR----TNQWTPVA-PMN--TKRSDFGVAVLDGKLYAVGGFDGEKSLN-------- 396 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCC----CCceeccC-Ccc--CccccceeEEECCEEEEEeccccccccc--------
Confidence 44777888888 245566665 34322211 111 1222211223367777888888543332
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe---cCCEEEEEe-C------CeEEEEeCCCCcEE--EEecCC
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL---RGSHLFSAS-G------GKISIFSLETFQTL--ATFANP 544 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~---s~~~l~s~s-d------g~I~iwd~~~~~~~--~~~~~~ 544 (701)
++..||+.+++.-.. ..........+. .|...++|+ + .++..||..+++-. ..+...
T Consensus 397 --------svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 397 --------SVECYDPVTNKWTPV---APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred --------cEEEecCCCCccccc---CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 134456666663211 111112222222 266666666 4 35788888776532 222211
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEE
Q 005342 545 PPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLC 611 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~ 611 (701)
.... .++. -++ ..++|+.|+ +|..||..+.+.... +....+.+..+.+ ++...+.|+.|| +|-
T Consensus 466 R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 466 RSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred cccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeE
Confidence 2221 2322 345 777777776 478899887765443 2212222222222 566777788776 577
Q ss_pred EEECCCCe
Q 005342 612 VWDAVGWK 619 (701)
Q Consensus 612 vwd~~~g~ 619 (701)
.||..+++
T Consensus 542 ~ydp~~d~ 549 (571)
T KOG4441|consen 542 CYDPETDT 549 (571)
T ss_pred EcCCCCCc
Confidence 77777654
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.50 E-value=3.3 Score=36.22 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=71.8
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCC--------ceEEeecCCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEECCC
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~v~~sp-----dg~~l~s~s~D~~I~vwd~~~ 617 (701)
.|.... .|++++.-|+|.|++.... ..+..+. -...|++++-.| +...|+.|+ ...+-.||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 455555 7889999999999987643 2334444 345678876554 234666565 56899999998
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcC----CCCEEEEEecCeEEEEECCCCceeee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp----dg~~l~sg~Dg~I~iwd~~~g~~~~~ 673 (701)
...+..+.+. ..|+++.+-. +.+++++|.+..|.-||.+..+..-+
T Consensus 83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 6533323333 6677777642 35677778888888888765555443
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.48 E-value=0.26 Score=46.83 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=61.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEE
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKIS 528 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~ 528 (701)
+..+++|+.+|.|.+|++... ....- ....-...|.++-.. +.+..+++ +|.|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~-------------------g~~~d---~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir 127 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE-------------------GAHSD---RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIR 127 (238)
T ss_pred CceEEeecccceEEEecCCcc-------------------chHHH---hhhcccccceeccccccccceeEEeccCCcee
Confidence 456899999999999976321 11100 001112334333333 44666666 99999
Q ss_pred EEeCCCCcEEEEecCCC-CCeEEEEEcCCC-eEEEE--eCCCcEEEEeCCC
Q 005342 529 IFSLETFQTLATFANPP-PIATYFILLPQD-LFAFG--FDDSSILVHCPCT 575 (701)
Q Consensus 529 iwd~~~~~~~~~~~~~~-~~i~~l~~spdg-~l~~g--s~dg~I~iwd~~~ 575 (701)
.|++.-++.+.....|. .++.....+..+ ++++. |.|..++.|++..
T Consensus 128 ~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 128 ACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99998888776666565 444444444444 55555 6777777777654
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.33 E-value=20 Score=41.84 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=63.7
Q ss_pred CCeEEEEeCCCCcEEEEecCC---------CC--------Ce-EEEEEcCCC-eEEEEe------------------CCC
Q 005342 524 GGKISIFSLETFQTLATFANP---------PP--------IA-TYFILLPQD-LFAFGF------------------DDS 566 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~---------~~--------~i-~~l~~spdg-~l~~gs------------------~dg 566 (701)
+|.|+-+|.+||+.+..+... .. .+ ...+++|+. .++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 478999999999998877421 00 11 234556655 433322 224
Q ss_pred cEEEEeCCCCceEEeecC-CCC--------CeEEEEEec-CCC---EEEEEeCCCeEEEEECCCCeeeee
Q 005342 567 SILVHCPCTKKTKAKLKG-HQN--------RITCLAYSL-SLN---VLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~-h~~--------~V~~v~~sp-dg~---~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
.|.-.|.+||+..-.++. |.. ...=+.+.. +|+ .++.++.+|.+++.|.++|+.+..
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 677788889988766654 211 111122322 563 788999999999999999987653
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=93.30 E-value=7.8 Score=42.89 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=49.0
Q ss_pred CCEEEEEe-C---CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe--ecCCCCC
Q 005342 516 GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNR 588 (701)
Q Consensus 516 ~~~l~s~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~--l~~h~~~ 588 (701)
|...+.|+ + ..+..||.++.+-...-.-........+..-+| ..+.| |.+.+||..+++.... +......
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence 66666666 4 356788887654322111011111112223456 55565 4577899887655322 2211112
Q ss_pred eEEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Q 005342 589 ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 618 (701)
Q Consensus 589 V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g 618 (701)
...+ --+|+..+.||.+ .+|.+||..++
T Consensus 440 ~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 440 PELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 2222 2367777777754 35677777764
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=0.23 Score=57.30 Aligned_cols=128 Identities=12% Similarity=0.065 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceE-----EeecCC------CCCeEEEEEecCCC-EEEEEeCCCeE
Q 005342 546 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTK-----AKLKGH------QNRITCLAYSLSLN-VLVSSGADAQL 610 (701)
Q Consensus 546 ~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~-----~~l~~h------~~~V~~v~~spdg~-~l~s~s~D~~I 610 (701)
.++..+...+|+ .++..+.+-.|+.||+++...- .-|..| .....++.|+|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345666667777 3333344447899998764321 112222 23456788998543 45677889999
Q ss_pred EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee--------eeEEE
Q 005342 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL--------ISHIM 681 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~--------i~~~~ 681 (701)
+|..+.--... ..+++.. ..+++++|+|.|+.++.| ..|++.-|.. +++....+++ |.+++
T Consensus 181 ~V~~~~~~~~~----v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLAQN----VTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhhhh----hcccCcc-----cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEE
Confidence 99887653222 1211111 678999999999999999 7888888876 6776666665 77777
Q ss_pred EE
Q 005342 682 FV 683 (701)
Q Consensus 682 fs 683 (701)
|-
T Consensus 251 Wl 252 (1405)
T KOG3630|consen 251 WL 252 (1405)
T ss_pred Ee
Confidence 73
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.99 E-value=13 Score=38.78 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=42.3
Q ss_pred CCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342 587 NRITCLAYSL-------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (701)
Q Consensus 587 ~~V~~v~~sp-------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg 658 (701)
..+..+.|-. .|.++++.-..+.|...++..+.... ....+..... ..+..+++.|||.+.++. .+|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~---~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT--EEEEFLGGFG---GRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE--EEEEECTTSS---S-EEEEEEETTSEEEEEE-TTT
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc--ceEEccccCC---CCceEEEEcCCCeEEEEECCCC
Confidence 4566777753 45567766667788888887553321 1222232332 578999999999888775 577
Q ss_pred eEE
Q 005342 659 QID 661 (701)
Q Consensus 659 ~I~ 661 (701)
.|+
T Consensus 328 ~iy 330 (331)
T PF07995_consen 328 KIY 330 (331)
T ss_dssp TEE
T ss_pred eEe
Confidence 653
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.76 E-value=24 Score=41.21 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=88.7
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCe-------------EEEEEcC---CCeEEEEeC----------CCcE
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI 568 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i-------------~~l~~sp---dg~l~~gs~----------dg~I 568 (701)
+..++.++ |+.+.-.|.++|+....+.. ...+ ..+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45677777 99999999999998877642 1111 1112222 335556643 6889
Q ss_pred EEEeCCCCceEEeecCC---------CC--------Ce-EEEEEecCCCEEEEEe------------------CCCeEEE
Q 005342 569 LVHCPCTKKTKAKLKGH---------QN--------RI-TCLAYSLSLNVLVSSG------------------ADAQLCV 612 (701)
Q Consensus 569 ~iwd~~~~~~~~~l~~h---------~~--------~V-~~v~~spdg~~l~s~s------------------~D~~I~v 612 (701)
+-+|.++|+.+-.+..- .+ .+ ...++.|+...++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999987665410 00 11 2234444444333321 2356777
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCC----CCeEEEEEcC-CCC---EEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPET----TIVNHIQFHP-DQI---HLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~----~~v~~v~~sp-dg~---~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.|.++|+..-..... +|..-+ ....-+.+.. +|+ .++.+ .+|.+.+.|-++|+.+...+.
T Consensus 419 LD~~TGk~~W~~Q~~----~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 419 LDATTGKERWVFQTV----HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EeCCCCceEEEeccc----CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 788888644322111 221000 1111222333 563 55555 799999999999998876543
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.64 E-value=2.6 Score=48.60 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC----------Cce--E-Eee--------cCCCCCeEEEEEecC---CCE
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCT----------KKT--K-AKL--------KGHQNRITCLAYSLS---LNV 600 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~----------~~~--~-~~l--------~~h~~~V~~v~~spd---g~~ 600 (701)
-.|..+.++|+| ++|..+..| |.|..+.. |+. . +++ ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 357889999999 777777655 33333321 110 0 000 012235666666664 356
Q ss_pred EEEEeCCCeEEEEECCC
Q 005342 601 LVSSGADAQLCVWDAVG 617 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~ 617 (701)
|+.-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 66666666666666654
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.43 E-value=0.93 Score=44.16 Aligned_cols=80 Identities=9% Similarity=0.125 Sum_probs=55.2
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeeeeee-eeeeccCCCC----CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQTGLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~-~l~~~~~~~~----~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
.+..++++|++.+.+|.+++||+.+++..... .+..+..... .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 35567889999999999999999998654322 2221221100 112778999999999888876778889999865
Q ss_pred Cceee
Q 005342 668 LNHTS 672 (701)
Q Consensus 668 g~~~~ 672 (701)
+.-++
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 54444
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.32 E-value=3.7 Score=41.02 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=68.6
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-CCCCeee
Q 005342 547 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 621 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd-~~~g~~~ 621 (701)
.+.+.+++++| .+|... ....++++.... .....+.+. .+..-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 67899999999 666555 333566665432 222222333 677889999988766666666667764 344421
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E---ecCeEEEEECC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP 666 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g---~Dg~I~iwd~~ 666 (701)
.... +..... ...|..+.+||||..+|. . .++.|.|--+.
T Consensus 101 --~~~~-v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 --EPVE-VDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred --eeEE-eccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 1222 222211 027999999999999886 2 36777777653
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.22 E-value=4.7 Score=42.84 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=76.1
Q ss_pred CeEEEEec--CCEEEEE-----------e-CC-eEEEEeCCC--Cc--EEEEecCCCCCeEEEEEcCCCeEEEEeCCCcE
Q 005342 508 SISCFALR--GSHLFSA-----------S-GG-KISIFSLET--FQ--TLATFANPPPIATYFILLPQDLFAFGFDDSSI 568 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~-----------s-dg-~I~iwd~~~--~~--~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I 568 (701)
....++|. |+++++- . .+ .|.+++-.+ |+ ....+...-.....+++.++| +++++.. .|
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~-~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP-DI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCC-eE
Confidence 45577888 6655553 1 23 777776533 33 233443333455889999999 3334444 45
Q ss_pred E-EEeCCCC-----c---eEEeecC----CCCCeEEEEEecCCCEEEEEeCC-------------------CeEEEEECC
Q 005342 569 L-VHCPCTK-----K---TKAKLKG----HQNRITCLAYSLSLNVLVSSGAD-------------------AQLCVWDAV 616 (701)
Q Consensus 569 ~-iwd~~~~-----~---~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D-------------------~~I~vwd~~ 616 (701)
. +.|.... + .+..+.. +....+.++|.|||.+.++.+.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 4 4354321 1 1222322 13447889999999866654421 456666666
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+++. +. +..+. ...+.++|+|+|+++++
T Consensus 173 g~~~---e~---~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 173 GGKL---RV---VAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCeE---EE---EecCc----CCCccceECCCCCEEEE
Confidence 5431 11 22233 44578999999998877
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.82 E-value=0.2 Score=56.39 Aligned_cols=163 Identities=9% Similarity=0.081 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEec-CC--EEEEEe-CCeEEEEeCC--CCcE-----EEEecCCCCCeEEEEEcC---CC-eEEEEeCCCc
Q 005342 503 ADPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQT-----LATFANPPPIATYFILLP---QD-LFAFGFDDSS 567 (701)
Q Consensus 503 ~~~~~~v~~l~~s-~~--~l~s~s-dg~I~iwd~~--~~~~-----~~~~~~~~~~i~~l~~sp---dg-~l~~gs~dg~ 567 (701)
++..+.+-.++|- .+ .+. . -|.+.+||+. .|+. ++........+.-+.|.| +. ++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 4666677777765 11 111 2 2678888864 3332 222333334445555554 45 8888889999
Q ss_pred EEEEeCCCCceEEeecCCCCCeEEEE-----------EecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342 568 ILVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 568 I~iwd~~~~~~~~~l~~h~~~V~~v~-----------~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~ 636 (701)
|++.+..+... ..+++|..++..++ .||||..+|+++.||.++.|.+.-.......+++... .|.+
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-phd~- 283 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-PHDK- 283 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-CCCC-
Confidence 98877655433 55666877665543 5899999999999999999987642222223333222 2211
Q ss_pred CCCeEEEEEcCC-------CC--EEEEE--ecCeEEEEECCCCcee
Q 005342 637 TTIVNHIQFHPD-------QI--HLLSI--HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 637 ~~~v~~v~~spd-------g~--~l~sg--~Dg~I~iwd~~~g~~~ 671 (701)
.+-.|.-|+.. +. +++++ -+..+++|....-+|+
T Consensus 284 -~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 -HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred -CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 22222223322 22 34444 2456999998777776
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.50 E-value=9.7 Score=42.88 Aligned_cols=100 Identities=14% Similarity=0.015 Sum_probs=65.4
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEc--CCC-eEEEEeCCCcEEEEeCC-----C----CceEEe
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILL--PQD-LFAFGFDDSSILVHCPC-----T----KKTKAK 581 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s--pdg-~l~~gs~dg~I~iwd~~-----~----~~~~~~ 581 (701)
++..++.+ ...+.|||.+.+.....-. .....|..+.|. |+| .+++.+..+.|.+|.-. . ...++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 44444444 5789999998887543322 346788888875 677 66666777888887531 1 123333
Q ss_pred e--cCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 582 L--KGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 582 l--~~h~-~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+ ..|+ .+|.+..|.++|.+++.++ +.+.|+|-.-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWL 157 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCc
Confidence 2 3344 5799999999998776443 5788887644
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.92 E-value=21 Score=36.61 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=77.0
Q ss_pred CCCCCeEEEEec--CCEEEEEeCC-eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe-CCCCce
Q 005342 504 DPKDSISCFALR--GSHLFSASGG-KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC-PCTKKT 578 (701)
Q Consensus 504 ~~~~~v~~l~~s--~~~l~s~sdg-~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd-~~~~~~ 578 (701)
.....+..+..+ |.++++++.| ...-||--...-...-......|.++.|+|++ +.++ ...|.|+.=+ ....+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 344667777766 7888888854 55677753222222222346789999999999 4443 4888888877 222222
Q ss_pred EEe----ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 579 KAK----LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 579 ~~~----l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
-.. .....-.+..++|.+++...|+|+. |.+. .....|+.= +..+ . ....+ ...+.|.|.++.+-++.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW--~~~~-~-~~~~~--~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTW--QKDR-V-GENVP--SNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS---EE-G-G-GTTSS--S---EEEEEETTEEEEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccc--eECc-c-ccCCC--CceEEEEEcCCCceEEE
Confidence 111 1111224789999998887776654 4433 344444311 1111 0 01111 66889999888888999
Q ss_pred EecCeEEEE
Q 005342 655 IHEGQIDVY 663 (701)
Q Consensus 655 g~Dg~I~iw 663 (701)
|.+|.|--|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 999987555
No 430
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.65 E-value=25 Score=37.09 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE----ecCCCE--EEEEEC-C---CcEEEEecC
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY----SHSGDF--LVALTQ-T---ATHKLWKWQ 471 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~----spdg~~--l~s~s~-d---g~i~vwd~~ 471 (701)
|...+++....++-+.+||++ ..+...+. .++...+.. .-+|+. |++++. + ..|++|.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~----Gk~lq~~~------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i- 134 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD----GKELQSLP------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI- 134 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT----S-EEEEE-------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE-
T ss_pred cccceEEEEeCCCCEEEEcCC----CcEEEeec------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe-
Confidence 456688888888999999996 44444322 233333322 124443 445543 2 46999976
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEec-----CCE-EEEEe-CCeEEEEeCC---CC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFALR-----GSH-LFSAS-GGKISIFSLE---TF 535 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~s-----~~~-l~s~s-dg~I~iwd~~---~~ 535 (701)
|+.++.+.. +.. .....+..+++- |.+ ++... +|.+..|-+. .+
T Consensus 135 ------------------d~~~g~L~~--v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 135 ------------------DPDTGELTD--VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp ------------------ETTTTEEEE---CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred ------------------cCCCCcceE--cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 444444321 100 111245566653 444 44444 7888777653 33
Q ss_pred ----cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CceEEeecC--CCCCeEEEEEec--CCC--
Q 005342 536 ----QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKG--HQNRITCLAYSL--SLN-- 599 (701)
Q Consensus 536 ----~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~v~~sp--dg~-- 599 (701)
+.+++|.. .+.+-.|...... .|..|-++.-|+-|+.+- ++.+....+ ....|-.++.-. +++
T Consensus 195 ~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 195 KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence 36778874 4578888888887 999999999999998762 233333333 345677777643 443
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 005342 600 VLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 600 ~l~s~s~D~~I~vwd~~~g 618 (701)
+|||.-.+++..||+....
T Consensus 274 LivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEGGGTEEEEEESSTT
T ss_pred EEEEcCCCCeEEEEecCCC
Confidence 4455556889999998863
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.60 E-value=7.2 Score=41.46 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=55.4
Q ss_pred CeEEEEec-CCEEEEEeCCeEEEE-eCCCC-----c---EEEEecCC----CCCeEEEEEcCCC--eEEEEeC-------
Q 005342 508 SISCFALR-GSHLFSASGGKISIF-SLETF-----Q---TLATFANP----PPIATYFILLPQD--LFAFGFD------- 564 (701)
Q Consensus 508 ~v~~l~~s-~~~l~s~sdg~I~iw-d~~~~-----~---~~~~~~~~----~~~i~~l~~spdg--~l~~gs~------- 564 (701)
....+++. +. +++++...|..| |.... + .+..+... ......+++.||| ++..|+.
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~ 151 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR 151 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence 45678887 44 555554445444 54321 1 11223221 2346789999999 5555532
Q ss_pred -----------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342 565 -----------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (701)
Q Consensus 565 -----------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D 607 (701)
.|.|.-+|..+++....-.++ ...+.++|+|+|+++++-..+
T Consensus 152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 145677776655443322334 335789999999987765433
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=3.7 Score=43.89 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=18.2
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEE
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVH 571 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iw 571 (701)
.|..+..++.| .++..+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 45677888888 88877778765544
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=90.24 E-value=28 Score=38.50 Aligned_cols=139 Identities=9% Similarity=-0.016 Sum_probs=67.3
Q ss_pred CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEe--ecCC
Q 005342 516 GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAK--LKGH 585 (701)
Q Consensus 516 ~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~dg---~I~iwd~~~~~~~~~--l~~h 585 (701)
|...+.|+ + ..+..||..+++-.. ......+. ...+..-+| ..+.|+.++ .+..||.++.+.... +...
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 55556666 3 467888876554221 11111111 112223356 666666543 477888877654331 1111
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec-----Ce
Q 005342 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQ 659 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D-----g~ 659 (701)
.... + +..-+|+..+.|+ .+.+||..+++-.. +..++..+ .....+ .-+|+..+.| .+ .+
T Consensus 398 r~~~-~-~~~~~~~IYv~GG---~~e~ydp~~~~W~~---~~~m~~~r----~~~~~~--v~~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 398 HYKS-C-ALVFGRRLFLVGR---NAEFYCESSNTWTL---IDDPIYPR----DNPELI--IVDNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred cccc-e-EEEECCEEEEECC---ceEEecCCCCcEeE---cCCCCCCc----cccEEE--EECCEEEEECCcCCCcccce
Confidence 1111 1 2233566556553 56788988764222 22122111 222222 2356666664 32 35
Q ss_pred EEEEECCCCc
Q 005342 660 IDVYEAPTLN 669 (701)
Q Consensus 660 I~iwd~~~g~ 669 (701)
+..||..+++
T Consensus 464 ve~Yd~~~~~ 473 (480)
T PHA02790 464 IEVYNNRTYS 473 (480)
T ss_pred EEEEECCCCe
Confidence 7788887665
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.14 E-value=31 Score=40.66 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred CCCCCeEEEEEc---C--CC--eEEEEeCCCcEEEEeCC------C---------CceEEeecCC---CCCeEEEEEec-
Q 005342 543 NPPPIATYFILL---P--QD--LFAFGFDDSSILVHCPC------T---------KKTKAKLKGH---QNRITCLAYSL- 596 (701)
Q Consensus 543 ~~~~~i~~l~~s---p--dg--~l~~gs~dg~I~iwd~~------~---------~~~~~~l~~h---~~~V~~v~~sp- 596 (701)
....+|..|+|. . +. ..+..-....++|+... . ..++..+..+ ..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 2 22 24444555667777621 1 1233344321 23677899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC---CCC----CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 597 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 597 dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~---~~~----~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
+...||.....|...||++..+.+.....+. +.. |+. .....-..+.|.++...|++.+...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 5668999999999999999332221111121 111 111 00133458999999889999888899999998876
Q ss_pred eeeee-ee-----eeEEEEEee
Q 005342 670 HTSQV-LL-----ISHIMFVQI 685 (701)
Q Consensus 670 ~~~~l-~~-----i~~~~fs~~ 685 (701)
....+ .. |-.+.-+|.
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ccchhccCCChhheeeEEecCC
Confidence 53312 11 666666666
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=6.3 Score=41.52 Aligned_cols=152 Identities=9% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
.|.+..+.|...|.+.-|.+.-.. .. ..+++.. ...++|.++.||+|.+.+++--.+.+|.+++....
T Consensus 31 DDaNkqlfavrSggatgvvvkgpn-dD--VpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d-------- 98 (657)
T KOG2377|consen 31 DDANKQLFAVRSGGATGVVVKGPN-DD--VPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD-------- 98 (657)
T ss_pred ccCcceEEEEecCCeeEEEEeCCC-CC--CCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCC--------
Confidence 344444444444666667665221 11 1112111 24579999999999999999889999999976332
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC--
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD-- 557 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-- 557 (701)
..+.....-.+.....|..+.|+ ..-++..++..+-+|-... ...++..+.+.-.|.-..|.++.
T Consensus 99 -----------~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 99 -----------NSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred -----------chhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 11111000001223458888998 7667777765566665433 23455556677888888999988
Q ss_pred -eEEEEeCCCcEEEEeCCCC
Q 005342 558 -LFAFGFDDSSILVHCPCTK 576 (701)
Q Consensus 558 -~l~~gs~dg~I~iwd~~~~ 576 (701)
+++++-..+++-=+.++++
T Consensus 168 ~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 168 ILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EeeeccccccccccEEEeec
Confidence 4444434444444444443
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=5 Score=47.00 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=81.3
Q ss_pred CCeEEEEeCCCCcEEE-----EecCC------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEeecCCCCCe
Q 005342 524 GGKISIFSLETFQTLA-----TFANP------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRI 589 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~-----~~~~~------~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-~~~~l~~h~~~V 589 (701)
+-.|..||+++...-. .+..+ .....++.|.|.= ..++...|+.|++.-+.... .+..+. -...+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence 3478999987543211 11111 2234678888876 77888899999888765332 223332 34568
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 590 ~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
++++|+|.|+.++.|-..|++.-|-..-..+ ..+...+... ...|.+|.|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e---~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEE---NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCC---CcceeEEEEecceeEEEE
Confidence 9999999999999999999999987665321 1122111111 178999999988888776
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.18 E-value=1.5 Score=29.92 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCC---CEEEEE-ecCeEEEEECCC
Q 005342 638 TIVNHIQFHPDQ---IHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 638 ~~v~~v~~spdg---~~l~sg-~Dg~I~iwd~~~ 667 (701)
+.|.++.|||++ .+|+.+ +-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999864 477777 788999999985
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.14 E-value=6 Score=42.24 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=85.7
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--------eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEE
Q 005342 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--------~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~ 594 (701)
...++-.|++.|+.+.....+... -+.+.|+. .-++|-.+..|.-.|.+- |..+..-. ....++.-.|
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~F 565 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKF 565 (776)
T ss_pred cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccc
Confidence 467888899999988888766554 46677754 345677777787778764 32222111 1111222222
Q ss_pred e----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 595 S----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 595 s----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
| ....++|.+|..|-|++||.-.-+ ....+. +-. ..|..|..+.+|+++++.....+-+.|+.
T Consensus 566 ss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP----~lG---~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 566 SSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALP----GLG---DAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccCceEEEecCCCceeeehhhcch--hhhcCc----ccc---cceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2 234589999999999999976521 111222 222 78899999999999998777788888874
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.91 E-value=15 Score=32.18 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=67.8
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCCCCEEEEEEec----C-CCEEEEEECCCcEEE
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFGGRVVRLIYSH----S-GDFLVALTQTATHKL 467 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~~~v~~l~~sp----d-g~~l~s~s~dg~i~v 467 (701)
-.|......|++++.-|+|.|.+...... ......+.+ ...|++++-.+ + ...|+. +....+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-----n~~italaaG~l~~~~~~D~Lli-Gt~t~lla 77 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-----NQEITALAAGRLKPDDGRDCLLI-GTQTSLLA 77 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-----CCceEEEEEEecCCCCCcCEEEE-eccceEEE
Confidence 34666666788888889999998763321 112233333 46677776554 2 334444 44567778
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec------CCEEEEEeCCeEEEEeCCCCcEEEEe
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSASGGKISIFSLETFQTLATF 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s------~~~l~s~sdg~I~iwd~~~~~~~~~~ 541 (701)
||+..+. .+.. +.-...|.++.+- ...+++|++..|.-||.+..+..++.
T Consensus 78 YDV~~N~--------------------d~Fy----ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 78 YDVENNS--------------------DLFY----KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEcccCc--------------------hhhh----hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8763321 1222 2334567777664 45666676888888888665555554
Q ss_pred c
Q 005342 542 A 542 (701)
Q Consensus 542 ~ 542 (701)
.
T Consensus 134 t 134 (136)
T PF14781_consen 134 T 134 (136)
T ss_pred c
Confidence 3
No 440
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.83 E-value=4.6 Score=43.19 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe----cC----------------CC-EEE
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LS----------------LN-VLV 602 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s----pd----------------g~-~l~ 602 (701)
.-.+.+++.+|++ +.|+...=|.|.++|+.++..++.++|..+. .+.|- +. .. +++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3457899999999 8888777789999999999999999886542 11221 11 11 334
Q ss_pred EEeCCCeEEEEECCCCeeee
Q 005342 603 SSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~ 622 (701)
.+-.-|.|-||+++.|.++.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EeccCCeEEEEecCCCCEEE
Confidence 56778899999999886443
No 441
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=88.79 E-value=0.22 Score=31.94 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.6
Q ss_pred cchhhhhhHhhhccchhhhhhhhhhccCcc
Q 005342 195 KEELIYLIHQFLNEEEFKETLHKLEQETRV 224 (701)
Q Consensus 195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~ 224 (701)
+.++.+++.|+|...||.+++..+++|++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 456778899999999999999999999876
No 442
>PRK13684 Ycf48-like protein; Provisional
Probab=88.76 E-value=33 Score=35.84 Aligned_cols=121 Identities=6% Similarity=-0.048 Sum_probs=69.7
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEE-EeCCCCc-eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~i-wd~~~~~-~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...+..+.+.|++ ++++|. .|.++. +| ..++ ....-.+-...++++.+.|+++.++.+ ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4567899999999 666554 455543 22 2222 222222334578999999999876655 4577654334444211
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
..+. .+... ....+.++.+.|++..+++|.+|.+. .....|+.-+..
T Consensus 249 --~~~~-~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~ 295 (334)
T PRK13684 249 --SKPI-IPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKD 295 (334)
T ss_pred --cccc-CCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeEC
Confidence 1111 11000 01457889999999988888888665 444555544433
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.72 E-value=3.9 Score=39.80 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEe-------c-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEE
Q 005342 507 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATF-------A-------NPPPIATYFILLPQD-LFAFGFDDSSILV 570 (701)
Q Consensus 507 ~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~-------~-------~~~~~i~~l~~spdg-~l~~gs~dg~I~i 570 (701)
.++..+...++++++.+ +|.+++||+.+++.+..- . .....|..+.++.+| -+++ ..+|..+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEE
Confidence 35555665677877777 999999999988754322 1 245678889999888 4444 34578899
Q ss_pred EeCCCCceEE
Q 005342 571 HCPCTKKTKA 580 (701)
Q Consensus 571 wd~~~~~~~~ 580 (701)
||..-+..+.
T Consensus 92 y~~~L~~W~~ 101 (219)
T PF07569_consen 92 YSPDLGCWIR 101 (219)
T ss_pred eccccceeEE
Confidence 9976655544
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.62 E-value=20 Score=40.99 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=86.3
Q ss_pred CCEEEEEeCCeEEEEeCCCCcEE------EEec----------------CCCCCeEEEEEcCCC---eEEEEeCCCcEEE
Q 005342 516 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 570 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~~~~~------~~~~----------------~~~~~i~~l~~spdg---~l~~gs~dg~I~i 570 (701)
.++++++..+.|.||+....... ..+. .....|+.+.+..=| .|+++.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 67788888999999997532221 1110 012345556555434 8899999999999
Q ss_pred EeCCC-------C----c---------eEEeecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 571 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 571 wd~~~-------~----~---------~~~~l~~h~~~V~~v~~s--pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
|.+++ . . +-..+. -...+++++++ ...++||.++....|.||-........ ....+
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~-~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF-YHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-ccccc
Confidence 97532 0 0 111122 22367889998 778889988888888888665521000 00001
Q ss_pred ccCCCCCCCCCeEEEEEcCCC-----C-EEEE-EecCeEEEEEC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 665 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg-----~-~l~s-g~Dg~I~iwd~ 665 (701)
.. + ...|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~--~---~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQ--H---SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc--c---ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 1 2668899997753 2 4444 35888887777
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.56 E-value=0.077 Score=55.67 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=93.7
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l 519 (701)
.......|-|.+.-++.++.+..+..||- .|+.+.. ....+...+++|+ +..+
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~----------------------agq~~le---~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK----------------------AGQVILE---LNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh----------------------hcceecc---cCCchhHhhhhhccccchh
Confidence 33445567888877888888888888853 2222211 1234555677787 5554
Q ss_pred EEE-e-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec
Q 005342 520 FSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 520 ~s~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp 596 (701)
+.. . .+.+.+||+.+....+.-.+....-.-+.|++.+ .++.|...|.+.|++..+.+.+-..--|...+++++|.+
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 443 3 7999999997643222111222223347889988 999999999999999887666554433888999999999
Q ss_pred CCCEEEEEeCCCe
Q 005342 597 SLNVLVSSGADAQ 609 (701)
Q Consensus 597 dg~~l~s~s~D~~ 609 (701)
.+. .+.++.|..
T Consensus 170 Ed~-vil~dcd~~ 181 (615)
T KOG2247|consen 170 EDY-VILCDCDNT 181 (615)
T ss_pred cce-eeecCcHHH
Confidence 764 445555543
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.47 E-value=42 Score=38.07 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=30.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 586 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
.+.+..+..||++++|+-=..+|.|.+-++...+..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 35678899999999999999999999988887654443
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.36 E-value=1.6 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCeEEEEEecC-C--CEEEEEeCCCeEEEEECCC
Q 005342 587 NRITCLAYSLS-L--NVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 587 ~~V~~v~~spd-g--~~l~s~s~D~~I~vwd~~~ 617 (701)
+.|.++.|||+ + .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899898999999999996
No 448
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.28 E-value=20 Score=38.06 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=67.3
Q ss_pred CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC--CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC-CCeEE
Q 005342 516 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 591 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~--~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~ 591 (701)
+..+..+. +|.|.-.|..++..+....... ..+..-.+..+|.+++++.++.++.+|.++|+.+-...... -.+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44455555 8999999999988776544221 22233333336688899999999999998998887766544 11111
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
-..-.++ .+..++.++.++..|..+|...
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEE
Confidence 1222233 3333447899999999988654
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=52 Score=37.35 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 583 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~ 583 (701)
.+.+..+++||+. +|+.-..+|.|.+-+++..+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4667889999999 99999999999999988777666655
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.36 E-value=13 Score=36.64 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=78.2
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCC----CceEE---eecCCCCCeEEEEEe
Q 005342 527 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCT----KKTKA---KLKGHQNRITCLAYS 595 (701)
Q Consensus 527 I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg--~I~iwd~~~----~~~~~---~l~~h~~~V~~v~~s 595 (701)
-.+||+.+++....-........+=++-||| ++.+|+. +| .+++++..+ ..... .+. ...+--++.--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4678988876433222222233344577899 7777765 33 588888654 11111 111 12233344455
Q ss_pred cCCCEEEEEeCCC-eEEEEECCCC--eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342 596 LSLNVLVSSGADA-QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 596 pdg~~l~s~s~D~-~I~vwd~~~g--~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~ 672 (701)
|||+.|+.|+.+. +.-+|.-+.. .......+........ ..---.+...|||++++.+..+. .|||..+.+.++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~--~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLP--NNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVR 203 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCc--cccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEe
Confidence 8999888887764 3445544221 1111111110100000 02223566789999998875543 478998888878
Q ss_pred eeee
Q 005342 673 QVLL 676 (701)
Q Consensus 673 ~l~~ 676 (701)
.++.
T Consensus 204 ~lP~ 207 (243)
T PF07250_consen 204 TLPD 207 (243)
T ss_pred eCCC
Confidence 7776
No 451
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.05 E-value=21 Score=39.36 Aligned_cols=148 Identities=10% Similarity=-0.056 Sum_probs=73.9
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC---CeEEEEEecCCC
Q 005342 524 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN---RITCLAYSLSLN 599 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~v~~spdg~ 599 (701)
.+...++|. +|..+..+.........+..-++| +++... +.++.+|+. |+.+..+.--.+ .=..+..-|+|+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 466777776 566655554322222226677888 554433 788899974 666554432111 113566779999
Q ss_pred EEEEEeC-------------CCeEEEEECCCCeeeeeeeeeeccCCCC------------------CCCCCeEEEEEcC-
Q 005342 600 VLVSSGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLV------------------PETTIVNHIQFHP- 647 (701)
Q Consensus 600 ~l~s~s~-------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~------------------~~~~~v~~v~~sp- 647 (701)
+|+.+.. ...|..+| .+|+.+....+..+..... ..=..++++.+.|
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 8887761 22466666 6776544322221110000 0002379999999
Q ss_pred CCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 648 DQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 648 dg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
++.+++++ .-..|...|..+++..-.+-.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 66777777 456888889888887766544
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=36 Score=34.16 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=90.9
Q ss_pred CCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecC--CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC---ceE
Q 005342 506 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQDLFAFGFDDSSILVHCPCTK---KTK 579 (701)
Q Consensus 506 ~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~---~~~ 579 (701)
.+-+.++.+++++...+. +.-+++.|+.+......+.. ..+-..++..+.+ +..++..|.-..+.|+.+. .+.
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC-EEEEeeccCcEEEEECCCCCCceee
Confidence 345667788888888888 78899999987654332221 1233355555433 5666665556667787654 333
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCe
Q 005342 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ 659 (701)
Q Consensus 580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~ 659 (701)
..+....+.-..++.| |++-..+..|+-+.+-|+.... ....+.....+ ..+.++..+++--+++....|
T Consensus 165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~--sPvli~~~n~g-----~g~~sv~vsdnr~y~vvy~eg- 234 (370)
T COG5276 165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH--SPVLIGSYNTG-----PGTYSVSVSDNRAYLVVYDEG- 234 (370)
T ss_pred eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC--CCeEEEEEecC-----CceEEEEecCCeeEEEEcccc-
Confidence 4444444444666775 5566667788899999998742 11222212111 468888888877666654443
Q ss_pred EEEEECCCC
Q 005342 660 IDVYEAPTL 668 (701)
Q Consensus 660 I~iwd~~~g 668 (701)
+-+-|..+-
T Consensus 235 vlivd~s~~ 243 (370)
T COG5276 235 VLIVDVSGP 243 (370)
T ss_pred eEEEecCCC
Confidence 445555433
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.90 E-value=14 Score=38.58 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce---EEee----cCCCCCeEEEEEecC----CCEEEEEeC--------C
Q 005342 547 IATYFILLPQDLFAFGFDDSSILVHCPCTKKT---KAKL----KGHQNRITCLAYSLS----LNVLVSSGA--------D 607 (701)
Q Consensus 547 ~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~---~~~l----~~h~~~V~~v~~spd----g~~l~s~s~--------D 607 (701)
..+.|+|.|||.++++...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+. +
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999334456799999999 44443 2222 224457899999994 333333331 1
Q ss_pred CeEEEEECCCC--eeeeeee-eeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 608 AQLCVWDAVGW--KKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 608 ~~I~vwd~~~g--~~~~~~~-l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
..|.-|....+ .....+. +..++. .......-..+.|.|||.+.++
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEE
T ss_pred eeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEE
Confidence 34555555544 1111122 222222 0001145577999999976665
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=86.65 E-value=44 Score=34.92 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=86.0
Q ss_pred CCCeEEEEec--CCEEEEEeCCeEEEE-eCCCCcEEE-EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 005342 506 KDSISCFALR--GSHLFSASGGKISIF-SLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 580 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~sdg~I~iw-d~~~~~~~~-~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~ 580 (701)
...+.++.+. +.+++++..|.+..- |- .++.-. ...+....++++.+.+++ .+++| ..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4567788887 445555557766542 22 222212 222345678999999999 66655 55766543334443322
Q ss_pred eecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342 581 KLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 656 (701)
Q Consensus 581 ~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~ 656 (701)
.... -...+.++++.|++..++ ++.+|.|.. ....|+.- ..+. ...+-. ...+.+.|..+++.+++|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW--~~~~-~~~~~~---~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTW--EKDP-VGEEVP---SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCC--eECC-cCCCCC---cceEEEEEeCCCceEEECC
Confidence 1111 123578889999887655 555676653 34444311 1111 001111 4678888888889999999
Q ss_pred cCeEEEEEC
Q 005342 657 EGQIDVYEA 665 (701)
Q Consensus 657 Dg~I~iwd~ 665 (701)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 998877763
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.49 E-value=0.44 Score=53.75 Aligned_cols=101 Identities=16% Similarity=0.282 Sum_probs=58.7
Q ss_pred EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE-----------EEcCCC-eEEEEeCCCcEEEEeC-----CCCceE
Q 005342 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYF-----------ILLPQD-LFAFGFDDSSILVHCP-----CTKKTK 579 (701)
Q Consensus 518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l-----------~~spdg-~l~~gs~dg~I~iwd~-----~~~~~~ 579 (701)
++..+. +++|++.++.+... ..+.+|...++.+ ..|||| .++..+.||.+..|-+ ..-.+.
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 444444 68888877754322 3344465544333 368999 8888999996655543 344556
Q ss_pred EeecCCCC-CeEEEEEecC-------C--CEEEEEeC-CCeEEEEECCCCe
Q 005342 580 AKLKGHQN-RITCLAYSLS-------L--NVLVSSGA-DAQLCVWDAVGWK 619 (701)
Q Consensus 580 ~~l~~h~~-~V~~v~~spd-------g--~~l~s~s~-D~~I~vwd~~~g~ 619 (701)
+.++.|.+ +-.|.-++.+ + .+++++++ ...+++|.-..+.
T Consensus 276 hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 66777764 3222223221 1 24555555 4468899887764
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.32 E-value=45 Score=35.72 Aligned_cols=147 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcE-EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe
Q 005342 506 KDSISCFALR--GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 581 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~ 581 (701)
.+....+..+ |.+++.+..|.+..=+-..... ...-......++.+.+.+++ .++++...+.+.--|-.....+..
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc
Q ss_pred ecCCCCC-----eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee---eeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 582 LKGHQNR-----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK---FLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 582 l~~h~~~-----V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~---~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
+...... +.++.|.+++..++ ++..|.+....-....-.... .+. ...+.+.|.++++.++
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~G~tW~~~~~~~~~~----------~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDGGKSWKRDKGADNIA----------ANLYSVKFFDDKKGFV 386 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCCCcceeEccccCCCC----------cceeEEEEcCCCceEE
Q ss_pred EEecCeEEEE
Q 005342 654 SIHEGQIDVY 663 (701)
Q Consensus 654 sg~Dg~I~iw 663 (701)
+|.+|.|--|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
No 457
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=85.96 E-value=26 Score=38.58 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCeEEEEec-----C--CEEEEEeCCeEEEEeCC-----CCcEEEEecC---CCCC--eEEEEEcCCC-eEEEEeCCCcE
Q 005342 507 DSISCFALR-----G--SHLFSASGGKISIFSLE-----TFQTLATFAN---PPPI--ATYFILLPQD-LFAFGFDDSSI 568 (701)
Q Consensus 507 ~~v~~l~~s-----~--~~l~s~sdg~I~iwd~~-----~~~~~~~~~~---~~~~--i~~l~~spdg-~l~~gs~dg~I 568 (701)
..|..++|. + .+||+-....|.+|-+. +++.+..-.. ..-+ -..+.|+|.. .+++-+....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458888888 2 34555558999999875 2222211111 1112 2567899999 55554444333
Q ss_pred EEEeCCC--CceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC
Q 005342 569 LVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG 617 (701)
Q Consensus 569 ~iwd~~~--~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~ 617 (701)
.+++++. ......++ ..+.|.|.+|.+||+.|+.+- ..=.-+|||-..
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3445443 33333444 457899999999999776543 334678998654
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.45 E-value=33 Score=39.19 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=67.2
Q ss_pred CeEEEEec----CCEEEEEe-CCeEEEEeCCC-------C----c---------EEEEecCCCCCeEEEEEc--CCC-eE
Q 005342 508 SISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LF 559 (701)
Q Consensus 508 ~v~~l~~s----~~~l~s~s-dg~I~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--pdg-~l 559 (701)
.|+.+.+. .+.|+.+. ||.|.+|.+++ . . +.-.+. ....+++++++ ... +|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 56666555 44566666 79999996521 1 0 011111 23467899998 666 88
Q ss_pred EEEeCCCcEEEEeCCC--CceEE-eecCCCCCeEEEEEecCC---C---EEEEEeCCCeEEEEECC
Q 005342 560 AFGFDDSSILVHCPCT--KKTKA-KLKGHQNRITCLAYSLSL---N---VLVSSGADAQLCVWDAV 616 (701)
Q Consensus 560 ~~gs~dg~I~iwd~~~--~~~~~-~l~~h~~~V~~v~~spdg---~---~l~s~s~D~~I~vwd~~ 616 (701)
|+++....|.||-... .+... .-..|..-|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9988888777765433 11111 001144568889887742 2 78889999999998883
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.12 E-value=2.8 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=24.5
Q ss_pred CCCCEEEEE--ecCeEEEEECCCCceeeeeee
Q 005342 647 PDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 647 pdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|++++|+++ .+++|.++|..+++.+..++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 678877775 588999999999988887764
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.06 E-value=0.13 Score=53.96 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=130.9
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEecCCCCc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQ 475 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~~~~ 475 (701)
...|-|.+..++.++.+..+..||-. ......+ ..++....++|..+|..++.. -..+.+.+||+.++.-
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a----gq~~le~-----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA----GQVILEL-----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh----cceeccc-----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 45678888889999888889899875 2222221 135677888999988865544 4479999998744321
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
.++- ....+... -+.|+ ...++.+. .|.+.+++..+.+.+-..-.|...+++++
T Consensus 110 ------------------qqLE---~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 110 ------------------QQLE---SGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred ------------------HHHh---ccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence 0110 10112111 25566 45566666 79999999887766555544888899999
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCceEEeec--CCCC--CeEEE---EEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQN--RITCL---AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 553 ~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~--~V~~v---~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
+.+.++.+.++.|..+.+-... ++...... +... ....+ .|..-|..+.+.-.. ++.+.=.+-.++.....
T Consensus 167 v~lEd~vil~dcd~~L~v~~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsg-Kkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 167 VTLEDYVILCDCDNTLSVTTQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSG-KKHLMYAKYNELDEPVA 244 (615)
T ss_pred ecccceeeecCcHHHHHHhhhc-cceeeeeeccCccchhhhheeeeeccccccceeeeeeec-HHHHHHHhhcCCCCccc
Confidence 9999877777777655543322 22222111 1000 00011 333344444432211 11111011000000111
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
+. +..+. +.+.++.|--||..+.--+-|.|..-.+.++++.+.+
T Consensus 245 l~-fq~~~----gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 245 LQ-FQEKY----GNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred eE-eeecC----CceeEEEEeccccccccccceeEEEEeccchHHHHHH
Confidence 21 22232 6688888888876544324556666667777665443
No 461
>PRK10115 protease 2; Provisional
Probab=84.80 E-value=85 Score=36.51 Aligned_cols=195 Identities=10% Similarity=-0.020 Sum_probs=92.2
Q ss_pred EEEEcCCCCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEE-EEEEecCCCEEEEEEC---CCcEE
Q 005342 397 ESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDFLVALTQ---TATHK 466 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~-~l~~spdg~~l~s~s~---dg~i~ 466 (701)
.++|++|++.|+.+..+ ..|..+++.+..... .. -+.. ...... ....+.|+++++..+. ++.+.
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~l-v~~e--~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~ 250 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--EL-VYEE--KDDTFYVSLHKTTSKHYVVIHLASATTSEVL 250 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC--eE-EEee--CCCCEEEEEEEcCCCCEEEEEEECCccccEE
Confidence 58999999877766442 356667776321111 11 1111 112222 3334558887665544 35677
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe--C---CeEEEEeCC-CCcEEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--G---GKISIFSLE-TFQTLAT 540 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s--d---g~I~iwd~~-~~~~~~~ 540 (701)
+++.. ..++..... +.... .....+...+..+...+ + ..|...++. .++. ..
T Consensus 251 l~~~~-------------------~~~~~~~~~-~~~~~-~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~ 308 (686)
T PRK10115 251 LLDAE-------------------LADAEPFVF-LPRRK-DHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EE 308 (686)
T ss_pred EEECc-------------------CCCCCceEE-EECCC-CCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eE
Confidence 77531 122221100 11111 22222221134433333 2 245445554 2222 23
Q ss_pred ecCC-C-CCeEEEEEcCCCeEEEEeCCCc--EEEEeCCCCceEEeec-CCCCCeEEEEEe--cCCC-EEEEEeC---CCe
Q 005342 541 FANP-P-PIATYFILLPQDLFAFGFDDSS--ILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLN-VLVSSGA---DAQ 609 (701)
Q Consensus 541 ~~~~-~-~~i~~l~~spdg~l~~gs~dg~--I~iwd~~~~~~~~~l~-~h~~~V~~v~~s--pdg~-~l~s~s~---D~~ 609 (701)
+..+ . ..+..+.+..+.++++...+|. ++++|..++ .+..+. .....+..+.++ +++. ++++.+. -+.
T Consensus 309 l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~ 387 (686)
T PRK10115 309 LIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDT 387 (686)
T ss_pred EECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCE
Confidence 3334 2 3677888873336777777775 555565433 334333 222233334445 3433 5544433 568
Q ss_pred EEEEECCCCe
Q 005342 610 LCVWDAVGWK 619 (701)
Q Consensus 610 I~vwd~~~g~ 619 (701)
++.+|..+++
T Consensus 388 ~y~~d~~~~~ 397 (686)
T PRK10115 388 LFELDMDTGE 397 (686)
T ss_pred EEEEECCCCc
Confidence 9999998864
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.97 E-value=39 Score=38.05 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
+.++.-+|.|+.+++++.||++++++.. +.+..++- ....+-..+.|...| ++++.+|..+.-|.-
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~----~r~qski~----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFI----PRRQSKIC----EEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeec----ccchhhhh----hhcCCccceeeeccc--eEEEeccchhheeec
Confidence 7788999999999999999999999986 22111110 012334456666555 677777777777754
No 463
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.49 E-value=70 Score=34.47 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=84.7
Q ss_pred CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-------CCEEEEEeCC
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 525 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~l~s~sdg 525 (701)
...|++||.+|.++||+...+.. ++. ..++. ..-..+|..+..- ...||+-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~--------------~~~-~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEF--------------QPE-DLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCC--------------CCc-cEEEE----EecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 45899999999999997633321 111 11222 1234556555543 2345554466
Q ss_pred eEEEEeCCC--Cc-------EEEEecCC--CCCeEEEEEcC----CC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342 526 KISIFSLET--FQ-------TLATFANP--PPIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (701)
Q Consensus 526 ~I~iwd~~~--~~-------~~~~~~~~--~~~i~~l~~sp----dg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (701)
.+.+|.+.. |. .+..+..| .....+++..| .| +|.+=+.||.+.+|+-+.....+.+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777777521 11 11222222 22334455443 32 889999999999999766544455544 222
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 589 ITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 589 V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
...+++.|....+++++.+..+.-|..
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecH
Confidence 345688888888999998888888875
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.64 E-value=50 Score=35.69 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=62.9
Q ss_pred CEEEEEeCCeEEEEeCCC-CcEEEEec----CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE
Q 005342 517 SHLFSASGGKISIFSLET-FQTLATFA----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 591 (701)
Q Consensus 517 ~~l~s~sdg~I~iwd~~~-~~~~~~~~----~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 591 (701)
+.|+.-++..|.-.|.+- |..+.... .......+..-..+|+||+|+..|.|++||.-.-.....+.+-...|..
T Consensus 529 qtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 529 QTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH 608 (776)
T ss_pred ceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceee
Confidence 345555566666666442 32222111 1122334444455559999999999999995444444456666678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+..+.+|+++++.+. ..+-+-|++-
T Consensus 609 idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 609 IDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eEeecCCcEEEEeec-ceEEEEeccc
Confidence 999999998776554 5677777653
No 465
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.41 E-value=55 Score=32.56 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=128.8
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
.++-.|||..-.++...+.+---|.. +++.....+.. ...-..+..-|||..-++-+.. -|.-
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~----tGev~~ypLg~---Ga~Phgiv~gpdg~~Witd~~~-aI~R--------- 128 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLGS---GASPHGIVVGPDGSAWITDTGL-AIGR--------- 128 (353)
T ss_pred ccccCCCCceEEecCccccceecCCC----CCceEEEecCC---CCCCceEEECCCCCeeEecCcc-eeEE---------
Confidence 56778999988888888888877877 77766655532 3344556677777755543332 2222
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCC-CCCeEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP-PPIATYFI 552 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-~~~i~~l~ 552 (701)
+|+++.......+...| ........|+ |+.-.++..|.---.|-.+ ..+..+... ...-+.|+
T Consensus 129 ------------~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~ 195 (353)
T COG4257 129 ------------LDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGIC 195 (353)
T ss_pred ------------ecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceE
Confidence 25555554433233233 3355666777 6666666532211222211 233344322 23457889
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEeec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
..||| .-++...+..|-..|..++.. ..+. +....-..+--+|.|..-+|....+.+.-+|.....-+ ..+
T Consensus 196 atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp--- 270 (353)
T COG4257 196 ATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP--- 270 (353)
T ss_pred ECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee---
Confidence 99999 666666677777778776622 2222 11223344445677887777777788888887763211 112
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 668 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g 668 (701)
++... ..-.++.....++.-.+ ...|.|.-+|.++.
T Consensus 271 LPgs~----arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 271 LPGSK----ARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred CCCCC----CCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 22222 33345555555554444 24555666665443
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.34 E-value=40 Score=32.34 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=84.8
Q ss_pred eEEEEecC-CEEEE-EeCCeEEEEeCC--CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC------cEEEE---eCC
Q 005342 509 ISCFALRG-SHLFS-ASGGKISIFSLE--TFQTLATFANPPPIATYFILLPQD-LFAFGFDDS------SILVH---CPC 574 (701)
Q Consensus 509 v~~l~~s~-~~l~s-~sdg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg------~I~iw---d~~ 574 (701)
...++.+| +.|.. ++.+.|.+|++. ..+...+|. .-+.|..+.++..| ++++-=++. .+|+| ...
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33444454 55544 448899999987 334666776 34788999999999 888754332 44553 222
Q ss_pred --CCceEE-eecCC---------------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee--eeeee
Q 005342 575 --TKKTKA-KLKGH---------------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC--SKFLH 627 (701)
Q Consensus 575 --~~~~~~-~l~~h---------------------~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~--~~~l~ 627 (701)
....+. .+-|| ..++.+++-.| .|++++ |+ ++++.+|.++.+.... ...+.
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEe
Confidence 112221 22222 23566777777 677665 33 4689999887743210 01111
Q ss_pred ---eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 628 ---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 628 ---~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
.+..++.. .....+++. +.++|.-++..+++..+
T Consensus 177 Fe~~l~~~~~~--~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDN--FKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred chhhhhheecC--ceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 01112210 224455554 56777777777777765
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.78 E-value=10 Score=35.41 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCeEEEEEecCC------CEEEEEeCCCeEEEEECCC
Q 005342 587 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 587 ~~V~~v~~spdg------~~l~s~s~D~~I~vwd~~~ 617 (701)
..|.+++|||-| .+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4889999999999998775
No 468
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.12 E-value=1.1e+02 Score=36.99 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCCCCeEEEEecCCEEEEEeCCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceE
Q 005342 503 ADPKDSISCFALRGSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTK 579 (701)
Q Consensus 503 ~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~-~~~ 579 (701)
...+++|..++--..+++++.+..|.+|+++. ...+..-- -.-++.-....--. +|+.|.--..|.+...... ..+
T Consensus 1094 eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rl 1172 (1366)
T KOG1896|consen 1094 EEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRL 1172 (1366)
T ss_pred hhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhhhceEEEEEccCceEE
Confidence 45567787665556678888889999999943 33322110 12222222222223 6666666666666544332 222
Q ss_pred EeecC--CCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCC
Q 005342 580 AKLKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 580 ~~l~~--h~~~V~~v~~spdg~--~l~s~s~D~~I~vwd~~~ 617 (701)
..+.- ..-.+.++.|--||. +++++..|+.|.++-...
T Consensus 1173 sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1173 SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 22221 122577888877776 677888899999986553
No 469
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.94 E-value=72 Score=32.52 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred eEEEEeCCCCcEEEEec------CCCCCeEEEEEcC------CC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------
Q 005342 526 KISIFSLETFQTLATFA------NPPPIATYFILLP------QD-LFAFGFDDSSILVHCPCTKKTKAKLKGH------- 585 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~------~~~~~i~~l~~sp------dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h------- 585 (701)
+|.+||+.+++.++++. ...+.+..+.+.. ++ ..++-+..+.|.++|+.+++.-+.+.++
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ------------CCCeEEEEEec---CCCEEEEEeCCC----eEEEEECCCCeeeeee----eeeeccCCCCCCCCCeEE
Q 005342 586 ------------QNRITCLAYSL---SLNVLVSSGADA----QLCVWDAVGWKKLCSK----FLHSFQTGLVPETTIVNH 642 (701)
Q Consensus 586 ------------~~~V~~v~~sp---dg~~l~s~s~D~----~I~vwd~~~g~~~~~~----~l~~~~~~~~~~~~~v~~ 642 (701)
...+..++.+| +|++|..+...+ .|..=.++........ .++ ..+... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~-~lG~k~---~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQ-DLGDKG---SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-E-EEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccce-eccccC---CCCce
Q ss_pred EEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----------eeEEEEEe---eEEeeeecce
Q 005342 643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----------ISHIMFVQ---IVVKFHSFKF 694 (701)
Q Consensus 643 v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----------i~~~~fs~---~~~~f~~~~~ 694 (701)
++++++|.+.++- ..+.|..|+..+.-....+.. +.++.+.+ -.+-+-+.++
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
No 470
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=79.48 E-value=1.1 Score=27.36 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=20.9
Q ss_pred hhhhhhHhhhccchhhhhhhhhhccC
Q 005342 197 ELIYLIHQFLNEEEFKETLHKLEQET 222 (701)
Q Consensus 197 ~~~~l~~q~l~~~~~~~~~~~l~~es 222 (701)
++-++|..+|.+.||.+++..+.+|+
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 45577999999999999999887764
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.27 E-value=83 Score=34.28 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeec-----CCCCCeEEEEEecCC------CEEEEE--e---
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLK-----GHQNRITCLAYSLSL------NVLVSS--G--- 605 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~-----~h~~~V~~v~~spdg------~~l~s~--s--- 605 (701)
-...+.|+|.||| ++++--..|.|++++..++.. +..+. ...+....++++|+- .+|... .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 3456899999999 666554469999998655432 22111 124678899999874 233322 1
Q ss_pred -----CCCeEEEEECCCC--eeee-eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 606 -----ADAQLCVWDAVGW--KKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 606 -----~D~~I~vwd~~~g--~~~~-~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
....|.-|.+... .... ...+..++.... ..-..|.|.|||.+.++
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~---H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND---HNGGRLVFGPDGKIYYT 162 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC---cCCceEEECCCCcEEEE
Confidence 1234555555421 1111 112222222111 23457889999987776
No 472
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=79.26 E-value=4.5 Score=33.55 Aligned_cols=79 Identities=25% Similarity=0.194 Sum_probs=48.3
Q ss_pred ChhHHHHHHHhcccccccCChh---HHHHHHHHhccccchhhhhccCCCC--ChhHHHHHHHHHHhhhcccccccccccc
Q 005342 97 ERTEADSIFRKDLKVFSVSQNR---IDCELAELLALKDLRENEQLSGYTN--ATSSRAKLIDSLKLLVKENRILQDKLIF 171 (701)
Q Consensus 97 ~~~~a~~~L~~~l~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~i~~~~~~~~~~~~ 171 (701)
+..+|+++.|+.++|+...++. .+.++..+|..++.. ...++.. ....|..+++.+...+-...- ..
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~---~~sp~~~ll~~~~~~~la~~~n~~~l~~~~-----~~ 73 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPT---EPSPYKELLSPSQREKLAEELNSAILELLH-----GK 73 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCC---CCccHHHHCCHHHHHHHHHHHHHHHHHHcc-----CC
Confidence 5789999999999999665533 344444555554321 1222222 455799999998886654110 11
Q ss_pred ccccchHHHHHHHH
Q 005342 172 PCVNNSALSSLIKL 185 (701)
Q Consensus 172 ~~~p~~RL~~Ll~q 185 (701)
| +.+.|+.++++
T Consensus 74 ~--~~s~L~~~~~~ 85 (99)
T smart00757 74 S--SESPLEILLSA 85 (99)
T ss_pred C--CCChHHHHHHH
Confidence 1 25678888775
No 473
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.42 E-value=73 Score=34.63 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=55.8
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 520 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~ 520 (701)
-.|..+..++.|..++-.|.+|.+.++=. +.|-..+ . + ...+..|.|-.++ +..++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp----------------~rwG~~s--~----~-eDgk~~v~CRt~~i~~~~f 160 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELP----------------KRWGKNS--E----F-EDGKSTVNCRTTPVAERFF 160 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEch----------------hhcCccc--e----e-cCCCceEEEEeecccceee
Confidence 35778888999999888888988777621 1122111 0 1 1122335454444 43333
Q ss_pred EEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceE
Q 005342 521 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 521 s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
+.+ ..-.+..++|+|++ .+..-+.|..|++||......+
T Consensus 161 tss--------------------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 161 TSS--------------------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ccC--------------------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 321 11134567788776 6777788889999988765544
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.40 E-value=45 Score=36.29 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=39.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
...+.++|.|||++|++--..|+|++++..++.......+..+.... .+.....|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~--ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDA--QHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccC--CCCceeeEEECCCc
Confidence 45689999999998887665799999987665322111122111110 12778999999884
No 475
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=65 Score=30.74 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=75.9
Q ss_pred CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec----C-CCCC
Q 005342 516 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNR 588 (701)
Q Consensus 516 ~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~----~-h~~~ 588 (701)
|+++..-. +|.-..+|.++.+.+..+. ..+.-..++.... .++.+....+++.-|.++.....+.. | .-+.
T Consensus 100 gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~ 177 (262)
T COG3823 100 GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSK 177 (262)
T ss_pred cceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeeccc
Confidence 55544443 8899999999988887765 2333345544333 45655555677777776654433322 2 1122
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec------cCCCCCCCCCeEEEEEcCCC-CEEEEE
Q 005342 589 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF------QTGLVPETTIVNHIQFHPDQ-IHLLSI 655 (701)
Q Consensus 589 V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~------~~~~~~~~~~v~~v~~spdg-~~l~sg 655 (701)
++-+.|- ||...|-.=.+..|..-|..+|+......+..+ ...+ ....+.+++.|++ +++++|
T Consensus 178 LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~---~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 178 LNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSN---DNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccc---cccccceeecCcCCeEEEec
Confidence 3344442 565555554555666667777754432222211 1222 2567899999987 666666
No 476
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=77.47 E-value=1e+02 Score=32.66 Aligned_cols=106 Identities=15% Similarity=0.017 Sum_probs=63.6
Q ss_pred CEEEEEe-CCeEEEEeCCCCcEEEEecCCC-CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCC---CCeEE
Q 005342 517 SHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ---NRITC 591 (701)
Q Consensus 517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---~~V~~ 591 (701)
..++.++ ++.++.+|..+|+.+..+.... ..+..-.+..++.+..++.++.++..|..+|+..-....-. ..+..
T Consensus 112 G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~ 191 (370)
T COG1520 112 GKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYG 191 (370)
T ss_pred CeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccccc
Confidence 3466666 8999999999999988887555 12222233334455555588999999988888765543211 11111
Q ss_pred EEEecCCCEEEEEeC--CCeEEEEECCCCeeeee
Q 005342 592 LAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 592 v~~spdg~~l~s~s~--D~~I~vwd~~~g~~~~~ 623 (701)
-....++ .++.+.. ++.+.-.|..+|...-.
T Consensus 192 ~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 192 SPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred Cceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 0011233 3444544 66788888888865443
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=76.83 E-value=99 Score=32.17 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=66.4
Q ss_pred EEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceEEeec-------------C--CCCCeEEEEEecCCCEEEEEeC
Q 005342 549 TYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAKLK-------------G--HQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~d------g~I~iwd~~~~~~~~~l~-------------~--h~~~V~~v~~spdg~~l~s~s~ 606 (701)
-++++.++| ++++.=.+ ..|+.++.. |+.+..+. + .+...-+++++|||+.|+++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 477887777 66655555 678888866 65544431 1 3347889999999996665533
Q ss_pred -----CC-----------eEEEEECCC-CeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEEE--E----ecCeEEE
Q 005342 607 -----DA-----------QLCVWDAVG-WKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS--I----HEGQIDV 662 (701)
Q Consensus 607 -----D~-----------~I~vwd~~~-g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~s--g----~Dg~I~i 662 (701)
|+ .|..||..+ +.......+. +..- .......+..+.+-+++++++. + ....++|
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~-ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYP-LDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEe-CCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 22 244455554 3222212222 2210 0001277899999999998876 2 2334555
Q ss_pred EEC
Q 005342 663 YEA 665 (701)
Q Consensus 663 wd~ 665 (701)
+.+
T Consensus 246 ~~v 248 (326)
T PF13449_consen 246 YRV 248 (326)
T ss_pred EEE
Confidence 544
No 478
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=76.01 E-value=4.6 Score=30.55 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHhcccc-cccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhccccc
Q 005342 52 IVMNGEWEKAEKYLSAFT-KLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 52 ~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~ 112 (701)
++.+|+|++|+..+.++- .-|++. .+.+.+.+ =++..|++++|..+|.+-+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~----~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP---EARLLLAQ----CYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH---HHHHHHHH----HHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH---HHHHHHHH----HHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999998872 223322 24443322 2447799999999999444433
No 479
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.72 E-value=68 Score=32.50 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe------CCCeEEEEECCCCeeeeeeeeeeccCCC-CCCCC
Q 005342 566 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTGL-VPETT 638 (701)
Q Consensus 566 g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s------~D~~I~vwd~~~g~~~~~~~l~~~~~~~-~~~~~ 638 (701)
..|++||..+.+....-.+-.+.|+++.|..+.++++.|. ....+..||..+..- .. +..+. ..-.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w---~~---~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW---SS---LGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee---ee---cCCcccccCCC
Confidence 4699999888777665555678899999987777777764 456789999988531 11 22211 00116
Q ss_pred CeEEEEEcC-CC-CEEEEE--ecC--eEEEEECCCCceeee-eee----eeEEEEEee
Q 005342 639 IVNHIQFHP-DQ-IHLLSI--HEG--QIDVYEAPTLNHTSQ-VLL----ISHIMFVQI 685 (701)
Q Consensus 639 ~v~~v~~sp-dg-~~l~sg--~Dg--~I~iwd~~~g~~~~~-l~~----i~~~~fs~~ 685 (701)
+|+.+.+.. |+ ++.++| .++ .|..||=.+-..+.. ..+ |.++.+-|.
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 788887743 33 445454 333 466676544333333 111 666655444
No 480
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.15 E-value=92 Score=30.96 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=44.7
Q ss_pred CCCeEEEEEc------CCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec--C-C-CEEEEEeCCCeEEE
Q 005342 545 PPIATYFILL------PQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--S-L-NVLVSSGADAQLCV 612 (701)
Q Consensus 545 ~~~i~~l~~s------pdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp--d-g-~~l~s~s~D~~I~v 612 (701)
...|+|++.- +++ .++.|+++|.|+|.|......+..+.-..-++ .+.-+. | . -.++.++.||.|++
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3456777642 334 89999999999999988887777666433333 222211 2 2 25667888898876
Q ss_pred E
Q 005342 613 W 613 (701)
Q Consensus 613 w 613 (701)
-
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.75 E-value=62 Score=39.18 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=50.3
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCcEEE--EeCCCC---c-e----------------EEeec-CCCCCeEEEEEecCCCE
Q 005342 544 PPPIATYFILLPQDLFAFGFDDSSILV--HCPCTK---K-T----------------KAKLK-GHQNRITCLAYSLSLNV 600 (701)
Q Consensus 544 ~~~~i~~l~~spdg~l~~gs~dg~I~i--wd~~~~---~-~----------------~~~l~-~h~~~V~~v~~spdg~~ 600 (701)
....|+++....+|.|..++.||.|+= |....+ + + +-.+. ++..+|..++.....+.
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 355678888777785555566664442 211111 0 0 11223 46779999999888889
Q ss_pred EEEEeCCCeEEEEECCC
Q 005342 601 LVSSGADAQLCVWDAVG 617 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~ 617 (701)
+.+-+..|+|.+||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999987
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.21 E-value=69 Score=36.60 Aligned_cols=246 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEEcCCCCeEE----EEcCCCcEEEEeccccCCCCceeEeecCCCC-------CCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 398 STSLPDADSAV----CAKSLEKSVNLKLQLINEPSECRTLLLPDNS-------FGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 398 l~~spdg~~l~----s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~-------~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
++|..-+..+. .|+.|..|.+.......+......+..|.-. |-+.++.+.|+-++--++..-.
T Consensus 22 l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~----- 96 (1243)
T COG5290 22 LGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVN----- 96 (1243)
T ss_pred hcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEc-----
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA- 542 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~- 542 (701)
|+...+.... +.+.-...|...+|| .+.++... +..|.++|- ...++..+.
T Consensus 97 -----------------------dp~p~e~~~e-ivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k-~fd~ise~~L 151 (1243)
T COG5290 97 -----------------------DPTPAELEME-IVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK-YFDPISEYHL 151 (1243)
T ss_pred -----------------------CCCcccchhh-hhccccCceEEEeeccCCceEEEEEcCceEEEEec-cccccchhhc
Q ss_pred -----------------------------------------------CCCCCeEEEEEcCCC-eEEEEeCCC----cEEE
Q 005342 543 -----------------------------------------------NPPPIATYFILLPQD-LFAFGFDDS----SILV 570 (701)
Q Consensus 543 -----------------------------------------------~~~~~i~~l~~spdg-~l~~gs~dg----~I~i 570 (701)
.-...-.-++|-.|. +.++|.... .+++
T Consensus 152 ~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rv 231 (1243)
T COG5290 152 KKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRV 231 (1243)
T ss_pred chhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceee
Q ss_pred EeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCC---CeeeeeeeeeeccCCCCCCCCCeEE
Q 005342 571 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNH 642 (701)
Q Consensus 571 wd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vwd~~~---g~~~~~~~l~~~~~~~~~~~~~v~~ 642 (701)
|. +.|++-..-...++.-..+.|-|+|..++|-+.|| .|..+.... |+.-...... ..+..
T Consensus 232 ys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~d----------Ek~~~ 300 (1243)
T COG5290 232 YS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCD----------EKAFL 300 (1243)
T ss_pred ec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCch----------hhhhh
Q ss_pred EEEcCCCCEEEEEecCeEEEEECCC----CceeeeeeeeeEEEEEe
Q 005342 643 IQFHPDQIHLLSIHEGQIDVYEAPT----LNHTSQVLLISHIMFVQ 684 (701)
Q Consensus 643 v~~spdg~~l~sg~Dg~I~iwd~~~----g~~~~~l~~i~~~~fs~ 684 (701)
++|+-....++.+..+.+++|-..+ .+.-..++++.-+.|-|
T Consensus 301 ~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 301 ENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred hhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeecc
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.62 E-value=1.2e+02 Score=31.56 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=84.3
Q ss_pred CCCEEEEEEecCCCEEEEEECCCc------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTAT------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~ 514 (701)
-+....+.+.|++..+++.+.+|. +...++.......+.....-.+.+-+. .|.... ......-++++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~G~~~~-----~~~~D~Egi~~ 92 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDP-DGQPFP-----KNGLDPEGIAV 92 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCC-CCCcCC-----cCCCChhHeEE
Confidence 467889999977667788888877 555554331100000000000111111 111110 01113446777
Q ss_pred c--CCEEEEEe-C------CeEEEEeCCCCcEEEEec---------------CCCCCeEEEEEcCCC-eEEEEeCCC---
Q 005342 515 R--GSHLFSAS-G------GKISIFSLETFQTLATFA---------------NPPPIATYFILLPQD-LFAFGFDDS--- 566 (701)
Q Consensus 515 s--~~~l~s~s-d------g~I~iwd~~~~~~~~~~~---------------~~~~~i~~l~~spdg-~l~~gs~dg--- 566 (701)
. |.++++.- + ..|+.++.. |+....+. ......-+++++|+| .++++.+..
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 5 66666555 6 788888875 66554442 123456899999999 666654332
Q ss_pred -------------cEEEEeCCC-CceEE----eecC-----CCCCeEEEEEecCCCEEEE
Q 005342 567 -------------SILVHCPCT-KKTKA----KLKG-----HQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 567 -------------~I~iwd~~~-~~~~~----~l~~-----h~~~V~~v~~spdg~~l~s 603 (701)
.|..||..+ +.... .+.. ....|..+.+-+++++|+-
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 32222 2221 2457889999999997763
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.31 E-value=1.3e+02 Score=31.88 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=108.1
Q ss_pred EEEEec---CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe------cC
Q 005342 446 RLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------RG 516 (701)
Q Consensus 446 ~l~~sp---dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~------s~ 516 (701)
+|..+| ....++....++-+.+||++.. .+.. +. .+.+..+.+ .|
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk---------------------~lq~--~~---~Gr~NNVDvrygf~l~g 111 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGK---------------------ELQS--LP---VGRPNNVDVRYGFPLNG 111 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS----------------------EEEE--E----SS-EEEEEEEEEEEETT
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCc---------------------EEEe--ec---CCCcceeeeecceecCC
Confidence 444453 4457777777888999976332 2221 11 123333332 23
Q ss_pred CE--EEEEe--C---CeEEEEeCC--CCcEEEEecCC-------CCCeEEEEE--cC-CC--eEEEEeCCCcEEEEeCC-
Q 005342 517 SH--LFSAS--G---GKISIFSLE--TFQTLATFANP-------PPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC- 574 (701)
Q Consensus 517 ~~--l~s~s--d---g~I~iwd~~--~~~~~~~~~~~-------~~~i~~l~~--sp-dg--~l~~gs~dg~I~iwd~~- 574 (701)
+. |+.++ + ..|++|-+. ++. +..+... ...++.+|+ +| +| +++++..+|.+..|-+.
T Consensus 112 ~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~ 190 (381)
T PF02333_consen 112 KTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTD 190 (381)
T ss_dssp EEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE
T ss_pred ceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEe
Confidence 32 44444 2 468898775 333 3333211 123566665 44 45 77888899988777664
Q ss_pred --CC----ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc--
Q 005342 575 --TK----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-- 646 (701)
Q Consensus 575 --~~----~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-- 646 (701)
.+ +.+++|.. .+.+..|+......+|..+-+|.-|.-|+...........+....+.+. ...|-.++.-
T Consensus 191 ~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l--~aDvEGlaly~~ 267 (381)
T PF02333_consen 191 DGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGL--VADVEGLALYYG 267 (381)
T ss_dssp -TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-
T ss_pred CCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccc--ccCccceEEEec
Confidence 23 45777774 3468889998888899999999888888876422111223322222222 1567777764
Q ss_pred CCC-CEEEE-E-ecCeEEEEECCC-Cceeeee
Q 005342 647 PDQ-IHLLS-I-HEGQIDVYEAPT-LNHTSQV 674 (701)
Q Consensus 647 pdg-~~l~s-g-~Dg~I~iwd~~~-g~~~~~l 674 (701)
+++ .||++ + .+++..||+.+. ...+..+
T Consensus 268 ~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 268 SDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 343 35555 5 688999999864 3434433
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.05 E-value=35 Score=41.16 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=81.5
Q ss_pred EeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEc--------CCC-eEEEEeCCCcEEEEeCCC----Cce---E--Eeec
Q 005342 522 ASGGKISIFSLETFQTLATFANPPPIATYFILL--------PQD-LFAFGFDDSSILVHCPCT----KKT---K--AKLK 583 (701)
Q Consensus 522 ~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s--------pdg-~l~~gs~dg~I~iwd~~~----~~~---~--~~l~ 583 (701)
..|+.+.+|+.+++.....+.+....|..+..- |.= ++++-..--.|.++-+.- +.. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 348999999999987777777766666655432 222 333333344565554321 111 0 1111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC----CC------eeee---------eeeeeeccCCCCCCCCCeEEEE
Q 005342 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV----GW------KKLC---------SKFLHSFQTGLVPETTIVNHIQ 644 (701)
Q Consensus 584 ~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~----~g------~~~~---------~~~l~~~~~~~~~~~~~v~~v~ 644 (701)
.....|+++....+|+.+.+|- || .+|.+. .| ++++ ...+-++++.+. .+|..++
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~---dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK---DPIRQIT 249 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC---CcceeeE
Confidence 2234688888777888777555 55 444432 11 1111 011222332333 7899999
Q ss_pred EcCCCCEEEE-EecCeEEEEECCC
Q 005342 645 FHPDQIHLLS-IHEGQIDVYEAPT 667 (701)
Q Consensus 645 ~spdg~~l~s-g~Dg~I~iwd~~~ 667 (701)
....-..+.+ +..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 9877777777 6899999999965
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.88 E-value=36 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCe
Q 005342 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ 659 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~ 659 (701)
..+|.+..||..+++.. ..+..+ .-.+.|+.+||+.+++.+.-+.
T Consensus 34 ~~~GRll~ydp~t~~~~--vl~~~L--------~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETT--VLLDGL--------YFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp ---EEEEEEETTTTEEE--EEEEEE--------SSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCcCEEEEECCCCeEE--EehhCC--------CccCeEEEcCCCCEEEEEeccC
Confidence 44688999999997521 222211 4568999999999998875433
No 487
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=72.51 E-value=1.5e+02 Score=32.08 Aligned_cols=152 Identities=9% Similarity=0.009 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-----CCCEEEEEECCCcEEEEecCCCCccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-----dg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
+...++.|+..|.++|++.........-..+.. .-..+|..+..-+ +...|++ =.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~--- 108 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVD--- 108 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecC---
Confidence 456899999999999999863221110011111 1256777776542 1223333 344667777662211
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCC--CCCeEEEEec------C-CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADP--KDSISCFALR------G-SHLFSAS-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~l~~s------~-~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
|. .+.|....-.+...| ......+++- | .++.+-+ ||.+.+|+-+.....+.+.. .--
T Consensus 109 g~-----------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 109 GT-----------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred CC-----------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 00 011111000000112 1222233332 2 3456667 99999999876554444443 222
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 548 ATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
...+++.+.- .+++++.+..+.-|..
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecH
Confidence 2446677766 7888888888887764
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.37 E-value=23 Score=39.93 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred CC-eEEEEeCCCcEEEEeCCC----CceEE-----------eecC-----------CCCCeEEEEEec----CCCEEEEE
Q 005342 556 QD-LFAFGFDDSSILVHCPCT----KKTKA-----------KLKG-----------HQNRITCLAYSL----SLNVLVSS 604 (701)
Q Consensus 556 dg-~l~~gs~dg~I~iwd~~~----~~~~~-----------~l~~-----------h~~~V~~v~~sp----dg~~l~s~ 604 (701)
+. .++++..||.+....... +.... .+.+ ..+.+.+++.++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 44 788888888877776553 11111 1111 123456667766 67799999
Q ss_pred eCCCeEEEEECCCCeee
Q 005342 605 GADAQLCVWDAVGWKKL 621 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~ 621 (701)
+.|+++|+||+.++..+
T Consensus 237 ~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCL 253 (547)
T ss_dssp ETTSEEEEEETTTTCEE
T ss_pred eCCCeEEEEECCCCeEE
Confidence 99999999999998753
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=72.03 E-value=14 Score=42.10 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=65.4
Q ss_pred CCCCeEEEEec-CCEEEEEeCCeEEE--------EeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC
Q 005342 505 PKDSISCFALR-GSHLFSASGGKISI--------FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 505 ~~~~v~~l~~s-~~~l~s~sdg~I~i--------wd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~ 575 (701)
....+.++.++ +...+..-||++-. ||.+- -..+.....++.+.++..| ++.|+.+|.|.++...+
T Consensus 580 e~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep---~~~~~~g~lPvrsla~~ed--~~was~gG~V~vi~~tt 654 (925)
T KOG3522|consen 580 EHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEP---NISIPTGSLPVRSLAFQED--FVWASEGGCVHVIPSTT 654 (925)
T ss_pred chhhhhhhhccccccccCccCCccccccCCCCCCCCCCC---ccccccCCccccchhhhhc--eeeeecCCceEEEechh
Confidence 34556666666 43322211333332 55542 1222234557777777766 57788999999999887
Q ss_pred CceEEeecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 576 KKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 576 ~~~~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
......+.. |...|+.+....+|=+++-.+.| .++.++..+
T Consensus 655 ~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 655 FIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred ccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 665555544 44578888888777777766655 555556655
No 490
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=71.64 E-value=1.3e+02 Score=30.99 Aligned_cols=243 Identities=10% Similarity=0.050 Sum_probs=116.1
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccc-ccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL-EEE 480 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~-g~~ 480 (701)
++++|+.|..+|-..+ ++.+.. +...++ .+...|+++...+.-+.+++-+. ...++++++..-.... ...
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~--~~~~kl-----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~ 83 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQP--GTLEKL-----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALG 83 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCC--CCeEEe-----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccC
Confidence 3468999999885444 454211 222221 24678999999998887777665 4459999873321100 000
Q ss_pred ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC--EEEEEe-CCeEEEEeCCCC----cEEEEe---c-CCCCCe
Q 005342 481 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS--HLFSAS-GGKISIFSLETF----QTLATF---A-NPPPIA 548 (701)
Q Consensus 481 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~--~l~s~s-dg~I~iwd~~~~----~~~~~~---~-~~~~~i 548 (701)
.... ........ + + ++.....-+++. ++ .++++. ..+|.++..... ...+.+ . ....++
T Consensus 84 ~~~~-----~~~~~~~~-~-~--~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~ 154 (302)
T smart00036 84 SARL-----VIRKNVLT-K-I--PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPV 154 (302)
T ss_pred Cccc-----cccccceE-e-C--CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccc
Confidence 0000 00000011 1 1 232323333333 33 233334 567776644321 122211 1 112334
Q ss_pred EEEEEcCC--C-eEEEEeCCCcEEEEeCCC--CceEE-----eecCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 549 TYFILLPQ--D-LFAFGFDDSSILVHCPCT--KKTKA-----KLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 549 ~~l~~spd--g-~l~~gs~dg~I~iwd~~~--~~~~~-----~l~~h~-~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
..+..+++ . .+..|+..+...++++.. ...-. ...... .++ ++.--+++.+|+ +- |....+-|...
T Consensus 155 ~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~-~~~~v~Vn~~G 231 (302)
T smart00036 155 FVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CY-DEFGVFVNLYG 231 (302)
T ss_pred eEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EE-CcEEEEEeCCC
Confidence 44444444 3 778887753344444432 11000 011111 233 333334555554 33 33444555553
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
.+......+. +. ....++++. ..++++-.++.|.|+++.+++.+++++
T Consensus 232 ~~~~r~~~l~-w~-------~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 232 KRRSRNPILH-WE-------FMPESFAYH--SPYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred CccccceEEE-cC-------CcccEEEEE--CCEEEEEcCCcEEEEECCCCceEEEEe
Confidence 1211112222 21 445677776 367776566779999999999999886
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.30 E-value=1.4e+02 Score=36.41 Aligned_cols=28 Identities=4% Similarity=-0.190 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEecc
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~ 422 (701)
...++|+|....+|.|...|.|+++...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CcceeeccccceEEEEEecccEEEeccc
Confidence 4468899999999999999999998764
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.55 E-value=18 Score=38.18 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=93.2
Q ss_pred CCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcE-EEEecCC-CC----CeE-EEEEcCCC-eEEEEeCCCcEEEE-eCC
Q 005342 506 KDSISCFALR--GSHLFSASGGKISIFSLETFQT-LATFANP-PP----IAT-YFILLPQD-LFAFGFDDSSILVH-CPC 574 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~-~~~~~~~-~~----~i~-~l~~spdg-~l~~gs~dg~I~iw-d~~ 574 (701)
...+..+-.. |+.+..-+..++.++++.+... .+++... .+ .|+ ++..-..| -+.+++.||-|.-| |++
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 3455555555 7777777778888888865432 1222111 11 122 11122334 77888899988776 444
Q ss_pred CC-c----eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 575 TK-K----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 575 ~~-~----~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
.+ . .++.++-....+..+.-..+.+-+++-+..|++.++.....+........ ....-+++||.+
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~----------~~~~~~~~Sp~~ 369 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY----------QAPQLVAMSPNQ 369 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh----------cCcceeeeCccc
Confidence 32 1 12222212223333322223456777888888888876664322222222 445678999999
Q ss_pred CEEEEEecCeEEEEECCCCceeeeeee
Q 005342 650 IHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 650 ~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.++++-+.|.++++.+++-..--++.+
T Consensus 370 ~~Ll~e~~gki~~~~l~Nr~Peiswsa 396 (733)
T COG4590 370 AYLLSEDQGKIRLAQLENRNPEISWSA 396 (733)
T ss_pred chheeecCCceEEEEecCCCCCccHHH
Confidence 999998889999999987665555444
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.36 E-value=51 Score=37.88 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=86.7
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccccccee
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 485 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~ 485 (701)
.+..|+.++.+.++.-... +..... .-+.......+.++.+++.. +..|.-||++-.|--...
T Consensus 549 Tic~gtq~ssisissss~~--s~ke~~-~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~------------ 611 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLD--SIKEVT-SEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPS------------ 611 (925)
T ss_pred cccccCccceeEEeeccCC--ccccee-ccCCCCchhhhhhhhccccc--cccCccCCccccccCCCC------------
Confidence 4566777777777765410 111111 11222234567777776543 566667777777622110
Q ss_pred eEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEecC---CCCCeEEEEEcCCC-eEEE
Q 005342 486 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFAN---PPPIATYFILLPQD-LFAF 561 (701)
Q Consensus 486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~spdg-~l~~ 561 (701)
..||.+-...+. ....+|.+.++..+.++++++|.|.++...+....+.... |...|+++.....| +++.
T Consensus 612 -gSwd~ep~~~~~-----~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvaf 685 (925)
T KOG3522|consen 612 -GSWDGEPNISIP-----TGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAF 685 (925)
T ss_pred -CCCCCCCccccc-----cCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEE
Confidence 124544222221 2345777777777777777799999999887665554443 45678999999998 7776
Q ss_pred EeCCCcEEEEeCCCC
Q 005342 562 GFDDSSILVHCPCTK 576 (701)
Q Consensus 562 gs~dg~I~iwd~~~~ 576 (701)
.+.| .+++++..+.
T Consensus 686 asG~-~~rlfhtetl 699 (925)
T KOG3522|consen 686 ASGD-EERLFHTETL 699 (925)
T ss_pred cCCC-EEEEeccccc
Confidence 6554 4455555443
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.45 E-value=17 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342 555 PQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 555 pdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~ 594 (701)
|++ .+++...+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 566 4455556889999999998888777653 22344444
No 495
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=68.08 E-value=39 Score=38.09 Aligned_cols=37 Identities=8% Similarity=0.256 Sum_probs=26.4
Q ss_pred CCeEEEEEcC----CCCEEEE-EecCeEEEEECCCCceeeee
Q 005342 638 TIVNHIQFHP----DQIHLLS-IHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 638 ~~v~~v~~sp----dg~~l~s-g~Dg~I~iwd~~~g~~~~~l 674 (701)
..+..++.++ +..++++ +.|+++++||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4456666666 6677777 68999999999999996553
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=67.80 E-value=19 Score=23.71 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEE
Q 005342 579 KAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVW 613 (701)
Q Consensus 579 ~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vw 613 (701)
+..+......-...+|||||+.|+.++.. |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 497
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=67.06 E-value=1.6e+02 Score=30.28 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC-C----eEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-R----ITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~-~----V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
-+++|...++| +|++.-.-..|.+.|.++|+.+-.+.|..+ . -...+|-.|-+++-.+..++.|.++|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 46888888999 999998889999999999999998876522 1 112344345555655567778888876
No 498
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.88 E-value=2.7e+02 Score=33.02 Aligned_cols=72 Identities=7% Similarity=0.022 Sum_probs=40.1
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeE----eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRT----LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~----l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
+..-|+.+..|+.+|.+.+|.+.+...+..... ..+....+..+|..+...+.-..++ .-.|+.+.++++..
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll-~l~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLL-ILSDSQIAVHKLPE 97 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchh-eecCCcceeeecCc
Confidence 444678899999999999999874321111000 0000011245666665555544433 34566777776633
No 499
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.38 E-value=2.7e+02 Score=32.47 Aligned_cols=87 Identities=9% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCC-C----ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN-K----QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 515 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~-~----~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s 515 (701)
.-.|..+..+|+|++++..|..|...+. +... . ...|+. .+.++.+...... +...+...|..+.|+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~--~i~Crt~~v~~~~-----~~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKK--EINCRTVPVDERF-----FTSNSSLEIKQVRWH 155 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCc--ceeEEEEEechhh-----ccCCCCceEEEEEEc
Confidence 3478899999999999888886655543 3111 0 011111 1122222222211 112455688899998
Q ss_pred -----CCEEEEEe-CCeEEEEeCCCC
Q 005342 516 -----GSHLFSAS-GGKISIFSLETF 535 (701)
Q Consensus 516 -----~~~l~s~s-dg~I~iwd~~~~ 535 (701)
+..|++-+ |+.+++||+...
T Consensus 156 P~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 156 PWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCCCeEEEEecCCEEEEEecCCC
Confidence 46666665 999999999654
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=65.16 E-value=80 Score=34.91 Aligned_cols=105 Identities=19% Similarity=0.097 Sum_probs=49.8
Q ss_pred eEEEE---eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee--ccCC
Q 005342 558 LFAFG---FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTG 632 (701)
Q Consensus 558 ~l~~g---s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~--~~~~ 632 (701)
+++.+ ...+..+++|. +|.+...+.........+..-++|.+++..+ ..++.+|.-. +......+.. ...|
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccc
Confidence 44444 34556777773 5666555543222222256678999887555 7889999864 3333222221 0113
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEe--------------cCeEEEEECCCCceeeeee
Q 005342 633 LVPETTIVNHIQFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 633 ~~~~~~~v~~v~~spdg~~l~sg~--------------Dg~I~iwd~~~g~~~~~l~ 675 (701)
| .+..-|+|++|+.+. ...|..+| .+|+.+..+.
T Consensus 193 H--------D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd 240 (477)
T PF05935_consen 193 H--------DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWD 240 (477)
T ss_dssp S---------EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEE
T ss_pred c--------ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEe
Confidence 3 466778898887643 23466666 6777666543
Done!