Query 005342
Match_columns 701
No_of_seqs 651 out of 4212
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 22:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.3E-42 4.6E-47 375.8 38.9 366 195-665 8-409 (410)
2 1vyh_C Platelet-activating fac 100.0 1.7E-40 5.8E-45 359.3 34.1 249 307-616 130-410 (410)
3 1nr0_A Actin interacting prote 100.0 4.1E-39 1.4E-43 366.8 41.1 334 307-687 39-549 (611)
4 1nr0_A Actin interacting prote 100.0 4.7E-39 1.6E-43 366.4 39.3 331 308-686 130-593 (611)
5 3ow8_A WD repeat-containing pr 100.0 5.4E-39 1.8E-43 335.5 36.5 282 317-666 22-320 (321)
6 3iz6_a 40S ribosomal protein R 100.0 7.4E-39 2.5E-43 342.8 33.0 307 307-670 46-378 (380)
7 1got_B GT-beta; complex (GTP-b 100.0 1.7E-37 5.9E-42 326.9 40.5 282 316-664 44-340 (340)
8 2ynn_A Coatomer subunit beta'; 100.0 2.3E-37 7.9E-42 320.6 39.2 282 318-668 4-303 (304)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-37 7.3E-42 326.9 38.6 302 316-674 4-342 (345)
10 3frx_A Guanine nucleotide-bind 100.0 3.2E-37 1.1E-41 321.9 37.3 290 318-668 8-318 (319)
11 4gqb_B Methylosome protein 50; 100.0 1.3E-37 4.3E-42 328.1 33.3 301 307-671 14-335 (344)
12 2ymu_A WD-40 repeat protein; u 100.0 2.2E-36 7.6E-41 341.7 44.9 274 389-686 217-520 (577)
13 2ymu_A WD-40 repeat protein; u 100.0 2E-36 6.7E-41 342.2 44.2 324 307-687 202-562 (577)
14 2pbi_B Guanine nucleotide-bind 100.0 8.9E-37 3E-41 323.4 38.5 280 318-664 55-354 (354)
15 1got_B GT-beta; complex (GTP-b 100.0 7.8E-37 2.7E-41 321.9 37.6 266 389-687 51-325 (340)
16 2hes_X YDR267CP; beta-propelle 100.0 8.8E-37 3E-41 320.1 36.3 295 315-667 2-328 (330)
17 4g56_B MGC81050 protein; prote 100.0 3.9E-37 1.3E-41 326.4 33.4 293 307-668 26-344 (357)
18 4aow_A Guanine nucleotide-bind 100.0 6.2E-36 2.1E-40 313.7 39.3 295 315-669 26-339 (340)
19 2xzm_R RACK1; ribosome, transl 100.0 4.5E-36 1.5E-40 316.5 37.8 294 318-669 12-342 (343)
20 3ow8_A WD repeat-containing pr 100.0 7.2E-36 2.5E-40 311.8 37.2 262 389-687 28-303 (321)
21 2ynn_A Coatomer subunit beta'; 100.0 7.5E-36 2.6E-40 309.2 36.6 259 388-685 8-281 (304)
22 2pbi_B Guanine nucleotide-bind 100.0 1.1E-35 3.7E-40 315.0 35.0 268 389-687 60-339 (354)
23 1erj_A Transcriptional repress 100.0 6.1E-35 2.1E-39 313.9 38.5 290 325-668 62-390 (393)
24 4ery_A WD repeat-containing pr 100.0 1.6E-34 5.4E-39 300.1 39.4 280 317-666 13-311 (312)
25 4gqb_B Methylosome protein 50; 100.0 2.9E-35 9.9E-40 310.0 33.2 239 324-618 79-332 (344)
26 3iz6_a 40S ribosomal protein R 100.0 1.9E-35 6.6E-40 316.3 28.5 274 389-687 62-357 (380)
27 3frx_A Guanine nucleotide-bind 100.0 5.5E-34 1.9E-38 297.3 37.1 264 389-689 13-301 (319)
28 3v7d_B Cell division control p 100.0 1.9E-33 6.4E-38 308.9 43.3 315 318-685 112-444 (464)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-34 1.8E-38 300.9 35.4 270 389-686 11-315 (345)
30 1r5m_A SIR4-interacting protei 100.0 7.2E-34 2.5E-38 307.1 36.6 331 308-687 26-407 (425)
31 1gxr_A ESG1, transducin-like e 100.0 4.8E-33 1.6E-37 290.9 41.7 293 307-665 31-335 (337)
32 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-35 2.2E-39 359.7 32.0 355 307-687 679-1231(1249)
33 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-34 2E-38 351.2 40.2 331 307-686 637-1097(1249)
34 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-33 4.4E-38 300.0 36.4 288 323-669 4-363 (372)
35 3dm0_A Maltose-binding peripla 100.0 1E-33 3.5E-38 327.5 38.2 293 318-667 373-693 (694)
36 1sq9_A Antiviral protein SKI8; 100.0 5E-34 1.7E-38 306.3 33.1 315 318-669 7-397 (397)
37 1pgu_A Actin interacting prote 100.0 3.2E-33 1.1E-37 317.9 41.4 352 307-687 39-597 (615)
38 3ei3_B DNA damage-binding prot 100.0 9E-34 3.1E-38 303.3 33.9 290 309-667 55-382 (383)
39 4g56_B MGC81050 protein; prote 100.0 3.6E-34 1.2E-38 303.6 30.1 256 307-618 70-344 (357)
40 4ery_A WD repeat-containing pr 100.0 6.7E-33 2.3E-37 287.8 38.7 263 389-687 19-292 (312)
41 3zwl_B Eukaryotic translation 100.0 1.2E-32 4E-37 291.6 38.9 294 318-672 23-351 (369)
42 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-33 7.3E-38 332.0 36.8 339 307-676 79-673 (902)
43 2pm9_A Protein WEB1, protein t 100.0 1.1E-34 3.9E-39 313.3 23.2 304 307-668 45-415 (416)
44 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-32 6.7E-37 283.3 38.6 283 317-674 8-303 (313)
45 4e54_B DNA damage-binding prot 100.0 7.7E-34 2.6E-38 309.6 29.1 288 318-671 110-434 (435)
46 3i2n_A WD repeat-containing pr 100.0 3.1E-33 1.1E-37 295.1 31.9 291 320-670 11-356 (357)
47 2xzm_R RACK1; ribosome, transl 100.0 2.1E-32 7.3E-37 288.3 37.9 266 388-687 16-322 (343)
48 1erj_A Transcriptional repress 100.0 1.7E-32 5.7E-37 294.9 37.4 262 391-685 62-363 (393)
49 3k26_A Polycomb protein EED; W 100.0 1E-33 3.5E-38 299.7 27.5 285 322-667 13-366 (366)
50 2pm7_B Protein transport prote 100.0 7.4E-33 2.5E-37 285.7 32.7 247 389-666 5-284 (297)
51 1gxr_A ESG1, transducin-like e 100.0 2.3E-32 7.9E-37 285.7 36.8 262 390-686 48-318 (337)
52 4aez_A CDC20, WD repeat-contai 100.0 1.6E-32 5.6E-37 295.7 36.6 285 324-675 88-388 (401)
53 2hes_X YDR267CP; beta-propelle 100.0 2.6E-32 9.1E-37 286.0 36.9 270 389-684 10-305 (330)
54 1r5m_A SIR4-interacting protei 100.0 6.6E-33 2.3E-37 299.5 32.5 293 307-666 68-424 (425)
55 4aow_A Guanine nucleotide-bind 100.0 1.1E-31 3.8E-36 281.3 39.0 263 389-687 34-319 (340)
56 3vl1_A 26S proteasome regulato 100.0 1E-32 3.5E-37 298.6 31.3 287 334-687 61-398 (420)
57 2pm9_A Protein WEB1, protein t 100.0 6.3E-33 2.1E-37 299.6 29.3 288 329-671 14-341 (416)
58 3vl1_A 26S proteasome regulato 100.0 5.5E-33 1.9E-37 300.7 28.7 314 307-667 78-419 (420)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-31 3.8E-36 293.3 38.4 289 307-667 139-442 (445)
60 2oaj_A Protein SNI1; WD40 repe 100.0 3.4E-32 1.2E-36 321.8 33.1 310 307-668 39-520 (902)
61 3dwl_C Actin-related protein 2 100.0 1.2E-32 4.2E-37 293.6 25.8 237 323-616 7-280 (377)
62 1pgu_A Actin interacting prote 100.0 2E-31 6.9E-36 303.0 37.4 312 308-667 143-614 (615)
63 2j04_B YDR362CP, TAU91; beta p 100.0 5.6E-33 1.9E-37 307.8 23.8 279 341-667 180-517 (524)
64 4gga_A P55CDC, cell division c 100.0 3.3E-31 1.1E-35 287.4 36.9 274 334-675 110-403 (420)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-30 4.7E-35 284.7 41.7 300 312-688 103-421 (445)
66 4h5i_A Guanine nucleotide-exch 100.0 5.1E-32 1.8E-36 287.9 28.8 287 327-668 14-344 (365)
67 3gre_A Serine/threonine-protei 100.0 7.9E-32 2.7E-36 293.6 29.6 295 311-664 47-437 (437)
68 3dm0_A Maltose-binding peripla 100.0 4.8E-31 1.7E-35 305.0 37.8 251 389-675 378-640 (694)
69 3bg1_A Protein SEC13 homolog; 100.0 4.1E-32 1.4E-36 282.7 25.1 245 389-666 9-292 (316)
70 3mkq_A Coatomer beta'-subunit; 100.0 5.2E-31 1.8E-35 310.3 36.6 314 307-686 35-404 (814)
71 3mkq_A Coatomer beta'-subunit; 100.0 8.8E-31 3E-35 308.3 38.4 287 318-674 4-309 (814)
72 4ggc_A P55CDC, cell division c 100.0 1.4E-30 4.8E-35 270.1 35.1 268 334-669 30-317 (318)
73 3zwl_B Eukaryotic translation 100.0 1.9E-30 6.4E-35 274.6 36.8 257 389-686 28-327 (369)
74 3v7d_B Cell division control p 100.0 5.2E-30 1.8E-34 281.5 39.2 289 307-663 142-459 (464)
75 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-30 1.3E-34 266.1 35.4 256 389-686 14-278 (313)
76 4a11_B DNA excision repair pro 100.0 2E-30 7E-35 278.5 33.6 312 307-676 23-374 (408)
77 4e54_B DNA damage-binding prot 100.0 2.8E-31 9.6E-36 289.4 27.1 268 389-686 115-412 (435)
78 3jrp_A Fusion protein of prote 100.0 2.6E-30 9E-35 274.8 33.8 254 388-673 6-293 (379)
79 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-30 8.8E-35 270.6 32.4 267 388-675 6-345 (351)
80 4h5i_A Guanine nucleotide-exch 100.0 1.6E-30 5.5E-35 276.4 31.2 260 307-618 43-344 (365)
81 1k8k_C P40, ARP2/3 complex 41 100.0 3E-30 1E-34 274.0 32.9 243 390-667 5-274 (372)
82 2pm7_B Protein transport prote 100.0 1.7E-30 5.9E-35 267.9 30.2 240 321-617 3-285 (297)
83 3ei3_B DNA damage-binding prot 100.0 1E-29 3.4E-34 271.8 36.1 269 389-686 69-364 (383)
84 3dw8_B Serine/threonine-protei 100.0 2.1E-30 7E-35 282.8 30.9 301 325-666 26-445 (447)
85 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-30 9.3E-35 281.5 31.3 287 324-682 130-432 (435)
86 4gga_A P55CDC, cell division c 100.0 6E-30 2E-34 277.5 32.5 253 307-618 125-396 (420)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-30 1.8E-34 276.1 31.7 280 334-670 39-345 (402)
88 1yfq_A Cell cycle arrest prote 100.0 2.4E-29 8.1E-34 263.9 34.4 280 323-664 7-321 (342)
89 3mmy_A MRNA export factor; mRN 100.0 1.2E-29 4.1E-34 268.3 31.1 288 307-665 19-344 (368)
90 3dwl_C Actin-related protein 2 100.0 1.2E-30 4E-35 278.2 22.2 245 391-666 9-280 (377)
91 1sq9_A Antiviral protein SKI8; 100.0 1.1E-29 3.8E-34 272.4 30.0 267 388-686 11-366 (397)
92 3dw8_B Serine/threonine-protei 100.0 6.3E-30 2.2E-34 278.9 28.4 271 392-672 27-378 (447)
93 3gre_A Serine/threonine-protei 100.0 2E-29 6.9E-34 274.5 29.9 274 390-676 60-368 (437)
94 3k26_A Polycomb protein EED; W 100.0 2.1E-29 7.3E-34 266.4 29.0 265 389-686 14-347 (366)
95 3bg1_A Protein SEC13 homolog; 100.0 8.4E-30 2.9E-34 265.2 25.2 242 322-617 8-293 (316)
96 3vu4_A KMHSV2; beta-propeller 100.0 3E-29 1E-33 265.5 29.4 288 311-669 3-338 (355)
97 3i2n_A WD repeat-containing pr 100.0 2.9E-29 1E-33 264.5 28.5 264 389-686 14-333 (357)
98 4a11_B DNA excision repair pro 100.0 3.3E-29 1.1E-33 269.1 29.1 271 389-686 39-346 (408)
99 1yfq_A Cell cycle arrest prote 100.0 1.1E-28 3.7E-33 258.9 32.0 252 390-681 8-301 (342)
100 4aez_A CDC20, WD repeat-contai 100.0 1.7E-28 5.7E-33 264.3 33.9 251 395-686 96-361 (401)
101 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-30 5.1E-35 281.5 17.6 241 307-616 37-296 (588)
102 4ggc_A P55CDC, cell division c 100.0 1.7E-28 5.7E-33 254.5 32.2 253 307-618 45-316 (318)
103 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-28 4.1E-33 257.9 30.4 262 321-619 5-339 (351)
104 1p22_A F-BOX/WD-repeat protein 100.0 5.9E-29 2E-33 270.9 28.4 247 307-619 153-416 (435)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-28 6.8E-33 263.8 29.9 266 395-686 37-325 (402)
106 3jro_A Fusion protein of prote 100.0 7.8E-29 2.7E-33 288.6 28.1 251 388-670 4-288 (753)
107 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-29 6.4E-34 279.5 21.0 259 401-685 170-454 (524)
108 3jrp_A Fusion protein of prote 100.0 4.2E-28 1.4E-32 257.7 28.9 245 317-618 1-288 (379)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.1E-27 7.3E-32 259.8 33.0 266 395-685 7-365 (450)
110 3bws_A Protein LP49; two-domai 100.0 8.8E-27 3E-31 253.1 37.1 291 307-667 99-432 (433)
111 2xyi_A Probable histone-bindin 100.0 5.3E-28 1.8E-32 263.0 27.5 258 389-668 124-411 (430)
112 3mmy_A MRNA export factor; mRN 100.0 3.2E-27 1.1E-31 249.6 31.5 263 389-686 35-327 (368)
113 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-27 3.8E-32 259.1 26.6 247 327-665 15-295 (588)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-26 4.2E-31 253.8 34.7 247 389-666 98-390 (450)
115 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-27 7.4E-32 249.9 26.2 254 399-684 43-309 (343)
116 1l0q_A Surface layer protein; 100.0 8.6E-26 2.9E-30 241.7 39.0 263 341-676 9-284 (391)
117 2w18_A PALB2, fancn, partner a 100.0 1.1E-26 3.7E-31 236.5 29.6 256 307-665 63-355 (356)
118 2xyi_A Probable histone-bindin 100.0 2.4E-26 8.2E-31 249.9 30.9 257 321-618 122-411 (430)
119 1l0q_A Surface layer protein; 100.0 3.7E-25 1.3E-29 236.8 39.8 250 307-622 12-280 (391)
120 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-26 7.7E-31 243.4 28.8 234 390-669 16-273 (355)
121 4gq1_A NUP37; propeller, trans 99.9 1.7E-26 5.9E-31 247.9 26.9 240 391-666 87-388 (393)
122 3jro_A Fusion protein of prote 99.9 7.7E-27 2.6E-31 271.8 24.9 241 320-617 2-285 (753)
123 3lrv_A PRE-mRNA-splicing facto 99.9 2.5E-26 8.6E-31 241.8 26.3 254 341-666 55-332 (343)
124 4gq1_A NUP37; propeller, trans 99.9 1E-26 3.5E-31 249.6 19.5 242 341-616 108-388 (393)
125 1nir_A Nitrite reductase; hemo 99.9 4.6E-24 1.6E-28 238.0 34.8 305 307-676 159-523 (543)
126 3bws_A Protein LP49; two-domai 99.9 1.6E-24 5.5E-29 235.2 30.5 254 394-686 124-412 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.8E-24 2.7E-28 228.7 30.8 237 404-686 143-409 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-23 5.6E-28 226.2 30.8 266 308-650 94-410 (415)
129 2w18_A PALB2, fancn, partner a 99.9 1.9E-23 6.6E-28 212.7 25.3 184 402-615 143-355 (356)
130 2z3z_A Dipeptidyl aminopeptida 99.9 4.5E-22 1.5E-26 230.3 31.3 309 309-669 46-437 (706)
131 1nir_A Nitrite reductase; hemo 99.9 7E-22 2.4E-26 220.3 31.7 282 341-687 156-491 (543)
132 2ojh_A Uncharacterized protein 99.9 6.9E-22 2.4E-26 201.5 26.5 248 341-655 19-289 (297)
133 1k32_A Tricorn protease; prote 99.9 5.3E-21 1.8E-25 230.9 35.8 328 307-687 33-484 (1045)
134 2ecf_A Dipeptidyl peptidase IV 99.9 9.8E-22 3.4E-26 228.8 27.9 304 327-686 36-436 (741)
135 1ri6_A Putative isomerase YBHE 99.9 5.1E-20 1.8E-24 192.4 32.6 258 395-686 40-334 (343)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-21 1.2E-25 223.3 25.8 291 334-686 21-421 (723)
137 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 191.1 33.5 250 395-686 43-325 (353)
138 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-20 7E-25 217.6 30.5 310 308-668 65-460 (741)
139 1k32_A Tricorn protease; prote 99.9 6.9E-20 2.4E-24 221.2 35.7 337 308-689 184-622 (1045)
140 3u4y_A Uncharacterized protein 99.9 5E-20 1.7E-24 192.0 30.0 266 341-669 17-306 (331)
141 1xfd_A DIP, dipeptidyl aminope 99.9 7.7E-20 2.6E-24 212.1 32.3 324 307-674 37-450 (723)
142 3vgz_A Uncharacterized protein 99.9 6.1E-19 2.1E-23 185.2 33.5 259 327-655 40-331 (353)
143 1pby_B Quinohemoprotein amine 99.9 1.2E-19 4.2E-24 189.0 27.8 265 342-676 9-319 (337)
144 2ojh_A Uncharacterized protein 99.9 4.2E-20 1.4E-24 188.2 23.2 242 307-608 22-293 (297)
145 3o4h_A Acylamino-acid-releasin 99.8 1.2E-19 4.1E-24 205.1 24.7 243 395-683 24-291 (582)
146 1ri6_A Putative isomerase YBHE 99.8 9.9E-19 3.4E-23 182.6 28.6 253 406-686 7-288 (343)
147 3hfq_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 181.7 30.6 247 395-672 42-324 (347)
148 3scy_A Hypothetical bacterial 99.8 1.7E-17 5.8E-22 175.3 36.2 267 395-683 52-360 (361)
149 3u4y_A Uncharacterized protein 99.8 2.5E-18 8.6E-23 179.1 28.8 249 399-687 4-285 (331)
150 2z3z_A Dipeptidyl aminopeptida 99.8 9.5E-19 3.2E-23 202.4 25.6 261 395-686 84-412 (706)
151 1pby_B Quinohemoprotein amine 99.8 3.8E-18 1.3E-22 177.6 26.7 251 307-621 11-314 (337)
152 1jmx_B Amine dehydrogenase; ox 99.8 7.4E-18 2.5E-22 176.5 26.7 234 398-676 5-334 (349)
153 3hfq_A Uncharacterized protein 99.8 6.7E-17 2.3E-21 169.6 33.3 262 308-621 17-323 (347)
154 1z68_A Fibroblast activation p 99.8 9.6E-19 3.3E-23 202.8 20.8 290 334-685 20-420 (719)
155 3o4h_A Acylamino-acid-releasin 99.8 4.7E-18 1.6E-22 192.0 25.8 258 329-667 23-315 (582)
156 1z68_A Fibroblast activation p 99.8 2.3E-18 7.7E-23 199.7 22.9 325 307-675 36-451 (719)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.4E-23 186.4 19.3 214 441-668 36-279 (434)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 6.9E-18 2.4E-22 182.9 22.6 254 395-666 39-332 (434)
159 3scy_A Hypothetical bacterial 99.8 3.5E-16 1.2E-20 165.1 31.3 255 404-686 13-317 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-16 4.9E-21 185.0 29.4 322 307-674 36-456 (740)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-16 4.9E-21 185.0 28.5 306 334-687 21-428 (740)
162 1jmx_B Amine dehydrogenase; ox 99.7 3E-16 1E-20 164.2 22.1 221 341-621 18-329 (349)
163 3pe7_A Oligogalacturonate lyas 99.7 7.1E-16 2.4E-20 164.3 24.8 305 311-665 14-380 (388)
164 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.9E-19 146.8 33.7 243 391-670 27-283 (286)
165 3pe7_A Oligogalacturonate lyas 99.7 3.1E-16 1.1E-20 167.0 21.5 253 398-686 41-362 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.9E-15 6.4E-20 160.0 26.7 241 395-668 42-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 8.9E-15 3.1E-19 154.4 26.7 273 343-685 30-358 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-14 7E-19 152.0 29.4 255 407-685 5-317 (365)
169 3c5m_A Oligogalacturonate lyas 99.7 1.1E-14 3.7E-19 155.3 26.6 302 311-669 14-386 (396)
170 3azo_A Aminopeptidase; POP fam 99.7 2.5E-14 8.5E-19 164.0 31.3 292 323-672 19-374 (662)
171 3azo_A Aminopeptidase; POP fam 99.6 2.2E-14 7.6E-19 164.3 27.6 259 389-685 19-347 (662)
172 3fvz_A Peptidyl-glycine alpha- 99.6 8.7E-14 3E-18 144.9 29.1 240 395-667 26-322 (329)
173 3c5m_A Oligogalacturonate lyas 99.6 3.3E-15 1.1E-19 159.2 18.4 247 395-671 38-333 (396)
174 2oiz_A Aromatic amine dehydrog 99.6 1.3E-13 4.3E-18 145.6 27.9 278 307-650 31-360 (361)
175 3dsm_A Uncharacterized protein 99.6 6.1E-13 2.1E-17 138.4 31.6 275 341-682 14-319 (328)
176 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-12 5.6E-17 144.5 35.9 307 307-676 177-547 (567)
177 2gop_A Trilobed protease; beta 99.6 2.7E-13 9.4E-18 141.8 27.4 231 395-684 17-311 (347)
178 3e5z_A Putative gluconolactona 99.6 6.3E-13 2.2E-17 135.9 29.4 237 389-670 23-289 (296)
179 2dg1_A DRP35, lactonase; beta 99.6 1.4E-12 4.8E-17 135.6 32.3 224 395-655 47-297 (333)
180 2gop_A Trilobed protease; beta 99.6 3E-13 1E-17 141.5 24.4 239 395-669 61-332 (347)
181 1q7f_A NHL, brain tumor CG1071 99.6 3.3E-12 1.1E-16 129.8 30.9 235 326-618 28-281 (286)
182 2xdw_A Prolyl endopeptidase; a 99.6 9.4E-13 3.2E-17 152.1 30.2 242 391-669 122-416 (710)
183 1rwi_B Serine/threonine-protei 99.6 1.7E-12 5.7E-17 130.5 27.7 237 394-670 25-267 (270)
184 2z2n_A Virginiamycin B lyase; 99.5 9.6E-11 3.3E-15 119.2 39.5 272 325-669 12-297 (299)
185 3fvz_A Peptidyl-glycine alpha- 99.5 2.9E-12 9.9E-17 133.3 26.9 236 441-686 23-303 (329)
186 3no2_A Uncharacterized protein 99.5 4.4E-12 1.5E-16 128.2 26.7 240 403-681 4-272 (276)
187 2dg1_A DRP35, lactonase; beta 99.5 2.9E-12 9.8E-17 133.3 25.3 251 395-685 8-290 (333)
188 2bkl_A Prolyl endopeptidase; m 99.5 2.6E-12 8.9E-17 148.0 25.2 242 391-670 118-400 (695)
189 1qks_A Cytochrome CD1 nitrite 99.5 7.3E-11 2.5E-15 131.2 35.5 265 341-668 174-478 (567)
190 2bkl_A Prolyl endopeptidase; m 99.5 3.2E-12 1.1E-16 147.2 24.4 238 326-620 119-400 (695)
191 3e5z_A Putative gluconolactona 99.5 2E-11 6.8E-16 124.7 27.4 238 316-618 16-287 (296)
192 2z2n_A Virginiamycin B lyase; 99.5 5.2E-10 1.8E-14 113.7 37.3 234 395-670 17-257 (299)
193 2xdw_A Prolyl endopeptidase; a 99.4 2.2E-11 7.5E-16 140.6 28.0 252 402-685 81-390 (710)
194 2mad_H Methylamine dehydrogena 99.4 3.2E-10 1.1E-14 119.7 34.6 260 345-674 48-357 (373)
195 3dsm_A Uncharacterized protein 99.4 5.2E-11 1.8E-15 123.7 27.2 252 307-622 17-306 (328)
196 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.4E-16 143.2 24.7 242 391-670 160-444 (741)
197 3sjl_D Methylamine dehydrogena 99.4 8.1E-11 2.8E-15 122.9 28.1 273 343-685 58-384 (386)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.7E-10 9.3E-15 116.9 29.8 235 395-667 20-299 (314)
199 1rwi_B Serine/threonine-protei 99.4 2.5E-10 8.4E-15 114.5 27.2 193 395-618 69-265 (270)
200 2qc5_A Streptogramin B lactona 99.4 4.3E-09 1.5E-13 106.9 36.7 230 395-666 64-299 (300)
201 3no2_A Uncharacterized protein 99.3 1.1E-10 3.6E-15 118.0 21.9 187 452-675 4-203 (276)
202 2qc5_A Streptogramin B lactona 99.3 8.2E-09 2.8E-13 104.8 35.8 249 395-685 22-282 (300)
203 3iuj_A Prolyl endopeptidase; h 99.3 1.7E-10 5.7E-15 132.7 24.4 240 391-670 126-408 (693)
204 3hrp_A Uncharacterized protein 99.3 1.2E-09 4E-14 117.0 29.0 236 395-665 133-408 (409)
205 3g4e_A Regucalcin; six bladed 99.3 1.9E-09 6.4E-14 110.2 29.3 210 442-683 13-249 (297)
206 1yr2_A Prolyl oligopeptidase; 99.3 5.1E-10 1.7E-14 129.8 25.1 229 329-619 164-443 (741)
207 3g4e_A Regucalcin; six bladed 99.2 4.4E-09 1.5E-13 107.4 28.7 217 395-654 15-258 (297)
208 1xip_A Nucleoporin NUP159; bet 99.2 2.7E-10 9.1E-15 119.5 19.5 188 442-654 38-230 (388)
209 3c75_H MADH, methylamine dehyd 99.2 7.7E-10 2.6E-14 117.6 23.1 262 344-674 99-409 (426)
210 3dr2_A Exported gluconolactona 99.2 4.3E-09 1.5E-13 107.9 26.0 225 395-665 47-304 (305)
211 2ghs_A AGR_C_1268P; regucalcin 99.2 1.9E-08 6.6E-13 104.1 30.4 216 395-655 51-289 (326)
212 2mad_H Methylamine dehydrogena 99.2 3.6E-08 1.2E-12 103.9 32.8 249 399-687 27-330 (373)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 6.3E-09 2.2E-13 106.6 25.8 218 442-686 18-279 (314)
214 1xip_A Nucleoporin NUP159; bet 99.2 5E-10 1.7E-14 117.5 17.3 160 508-689 39-228 (388)
215 2ghs_A AGR_C_1268P; regucalcin 99.1 5.5E-08 1.9E-12 100.6 29.8 180 395-605 92-290 (326)
216 3sjl_D Methylamine dehydrogena 99.1 1.6E-08 5.4E-13 105.6 24.7 252 398-686 38-342 (386)
217 3hrp_A Uncharacterized protein 99.1 6.4E-08 2.2E-12 103.4 29.4 227 329-615 132-408 (409)
218 3iuj_A Prolyl endopeptidase; h 99.1 8.9E-09 3E-13 118.3 23.8 233 326-619 127-407 (693)
219 1mda_H Methylamine dehydrogena 99.1 3.5E-09 1.2E-13 110.7 17.6 255 345-676 47-355 (368)
220 2qe8_A Uncharacterized protein 99.0 4.2E-08 1.4E-12 102.3 25.2 236 395-663 19-317 (343)
221 3c75_H MADH, methylamine dehyd 99.0 2.1E-08 7.2E-13 106.6 21.8 248 402-687 82-382 (426)
222 3dr2_A Exported gluconolactona 99.0 1.2E-07 4E-12 97.1 25.1 209 441-685 44-287 (305)
223 3hxj_A Pyrrolo-quinoline quino 98.9 1.9E-07 6.5E-12 96.2 23.9 279 307-667 40-324 (330)
224 2qe8_A Uncharacterized protein 98.9 2.3E-07 7.8E-12 96.7 24.0 218 442-685 17-301 (343)
225 1kb0_A Quinohemoprotein alcoho 98.9 1.6E-07 5.5E-12 107.0 24.1 308 307-654 87-536 (677)
226 1yiq_A Quinohemoprotein alcoho 98.9 6.4E-07 2.2E-11 102.3 28.7 156 511-676 239-514 (689)
227 2iwa_A Glutamine cyclotransfer 98.9 7.8E-07 2.7E-11 87.9 24.9 202 442-668 21-238 (266)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.7E-06 5.8E-11 91.1 29.3 292 307-664 63-375 (376)
229 1kb0_A Quinohemoprotein alcoho 98.8 1.8E-06 6E-11 98.4 31.3 141 526-676 284-516 (677)
230 2hz6_A Endoplasmic reticulum t 98.8 8.6E-10 2.9E-14 116.4 2.2 185 452-676 8-201 (369)
231 1yiq_A Quinohemoprotein alcoho 98.8 1.3E-06 4.6E-11 99.6 28.7 309 307-654 80-534 (689)
232 2hz6_A Endoplasmic reticulum t 98.8 1.7E-09 5.7E-14 114.2 3.1 219 403-669 8-238 (369)
233 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.8E-10 80.4 31.1 210 442-687 36-263 (267)
234 3hxj_A Pyrrolo-quinoline quino 98.8 1E-07 3.6E-12 98.2 15.9 228 395-675 62-291 (330)
235 2ece_A 462AA long hypothetical 98.8 2E-06 6.8E-11 90.4 25.2 199 449-666 89-351 (462)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.7 4.7E-06 1.6E-10 87.7 28.2 225 403-676 102-346 (376)
237 1mda_H Methylamine dehydrogena 98.7 5.6E-07 1.9E-11 94.0 18.8 252 308-620 47-349 (368)
238 3nol_A Glutamine cyclotransfer 98.7 4.3E-06 1.5E-10 81.6 23.4 188 441-655 42-243 (262)
239 3nok_A Glutaminyl cyclase; bet 98.7 1.3E-06 4.5E-11 85.2 19.4 171 505-685 53-245 (268)
240 2iwa_A Glutamine cyclotransfer 98.7 7.9E-06 2.7E-10 80.7 25.0 192 395-618 23-238 (266)
241 3nol_A Glutamine cyclotransfer 98.7 1.5E-06 5E-11 84.9 19.2 171 506-685 42-235 (262)
242 4a2l_A BT_4663, two-component 98.6 0.00025 8.5E-09 82.5 41.8 238 395-670 359-617 (795)
243 4a2l_A BT_4663, two-component 98.6 0.00013 4.5E-09 84.9 37.9 241 395-670 312-574 (795)
244 2ece_A 462AA long hypothetical 98.6 4.8E-06 1.7E-10 87.5 22.9 230 402-656 93-399 (462)
245 1fwx_A Nitrous oxide reductase 98.6 6.6E-07 2.3E-11 97.3 16.0 235 401-669 98-433 (595)
246 3mbr_X Glutamine cyclotransfer 98.6 3.5E-05 1.2E-09 74.5 26.5 188 441-655 20-222 (243)
247 3mbr_X Glutamine cyclotransfer 98.6 1.1E-05 3.7E-10 78.1 22.2 173 505-685 19-214 (243)
248 1npe_A Nidogen, entactin; glyc 98.6 9E-05 3.1E-09 73.7 30.1 215 395-650 38-263 (267)
249 2p4o_A Hypothetical protein; p 98.5 9.3E-05 3.2E-09 75.3 29.5 219 395-655 34-275 (306)
250 3nok_A Glutaminyl cyclase; bet 98.5 1.6E-05 5.5E-10 77.5 22.0 187 441-655 54-253 (268)
251 3v9f_A Two-component system se 98.5 0.00034 1.2E-08 81.2 37.0 240 395-670 365-614 (781)
252 1fwx_A Nitrous oxide reductase 98.5 6.8E-06 2.3E-10 89.5 20.3 195 451-676 99-380 (595)
253 3v9f_A Two-component system se 98.4 0.00036 1.2E-08 81.0 34.9 239 395-669 315-570 (781)
254 2fp8_A Strictosidine synthase; 98.4 0.00014 4.8E-09 74.5 27.7 238 395-667 21-313 (322)
255 1kv9_A Type II quinohemoprotei 98.4 2.7E-05 9.2E-10 88.5 23.4 141 526-676 271-497 (668)
256 1kv9_A Type II quinohemoprotei 98.3 0.00017 5.9E-09 81.9 27.7 174 446-622 234-493 (668)
257 3v64_C Agrin; beta propeller, 98.3 0.0027 9.3E-08 65.7 33.6 239 395-676 36-284 (349)
258 3v65_B Low-density lipoprotein 98.2 0.0018 6.3E-08 68.0 32.0 237 397-676 81-327 (386)
259 2fp8_A Strictosidine synthase; 98.2 0.00044 1.5E-08 70.7 26.3 201 443-675 20-276 (322)
260 1ijq_A LDL receptor, low-densi 98.2 0.0062 2.1E-07 62.0 34.7 232 407-675 4-246 (316)
261 2ad6_A Methanol dehydrogenase 98.2 0.00014 4.8E-09 80.9 23.9 140 526-676 273-503 (571)
262 2xe4_A Oligopeptidase B; hydro 98.2 0.00032 1.1E-08 80.9 26.9 196 397-619 225-460 (751)
263 1w6s_A Methanol dehydrogenase 98.2 0.00019 6.5E-09 79.9 23.9 141 526-676 279-512 (599)
264 2xe4_A Oligopeptidase B; hydro 98.2 0.00014 4.9E-09 83.8 23.2 237 395-670 176-461 (751)
265 2ad6_A Methanol dehydrogenase 98.2 0.00024 8.4E-09 78.9 24.2 129 518-655 318-524 (571)
266 3qqz_A Putative uncharacterize 98.1 0.00077 2.6E-08 66.0 24.4 205 436-667 21-253 (255)
267 2p4o_A Hypothetical protein; p 98.0 0.0019 6.4E-08 65.5 26.3 206 442-683 32-263 (306)
268 1k3i_A Galactose oxidase precu 98.0 0.00048 1.6E-08 78.1 24.2 232 396-655 246-528 (656)
269 3p5b_L Low density lipoprotein 98.0 0.02 6.9E-07 60.3 34.6 235 406-676 85-329 (400)
270 3qqz_A Putative uncharacterize 98.0 0.0073 2.5E-07 59.0 27.4 203 391-617 24-253 (255)
271 1w6s_A Methanol dehydrogenase 97.9 0.00083 2.8E-08 74.7 23.2 100 524-624 181-349 (599)
272 1flg_A Protein (quinoprotein e 97.9 0.0024 8.2E-08 71.0 26.8 81 565-654 465-545 (582)
273 1k3i_A Galactose oxidase precu 97.9 0.0002 7E-09 81.2 17.4 241 397-670 190-500 (656)
274 1flg_A Protein (quinoprotein e 97.8 0.0033 1.1E-07 69.9 25.9 141 525-676 291-525 (582)
275 2xbg_A YCF48-like protein; pho 97.8 0.046 1.6E-06 55.8 34.6 248 395-683 38-301 (327)
276 2xbg_A YCF48-like protein; pho 97.8 0.017 5.9E-07 59.0 27.9 230 395-665 82-320 (327)
277 3tc9_A Hypothetical hydrolase; 97.7 0.0094 3.2E-07 63.5 26.3 237 395-666 139-429 (430)
278 3sov_A LRP-6, low-density lipo 97.7 0.026 8.9E-07 57.4 28.5 224 414-676 13-247 (318)
279 3v65_B Low-density lipoprotein 97.7 0.02 7E-07 59.9 27.8 194 395-619 118-320 (386)
280 3v64_C Agrin; beta propeller, 97.7 0.028 9.7E-07 57.9 28.5 153 507-668 73-235 (349)
281 3m0c_C LDL receptor, low-densi 97.7 0.036 1.2E-06 63.5 31.5 234 406-676 397-641 (791)
282 4hw6_A Hypothetical protein, I 97.6 0.026 9E-07 60.1 28.0 236 395-666 141-432 (433)
283 1ijq_A LDL receptor, low-densi 97.6 0.079 2.7E-06 53.6 29.6 152 507-667 30-195 (316)
284 3amr_A 3-phytase; beta-propell 97.6 0.028 9.6E-07 57.1 25.4 185 403-619 39-266 (355)
285 3amr_A 3-phytase; beta-propell 97.6 0.034 1.2E-06 56.4 25.7 147 525-675 99-272 (355)
286 3kya_A Putative phosphatase; s 97.5 0.02 7E-07 61.4 25.0 253 395-673 141-481 (496)
287 1n7d_A LDL receptor, low-densi 97.4 0.0011 3.9E-08 75.3 13.5 207 442-676 406-623 (699)
288 3p5b_L Low density lipoprotein 97.4 0.18 6E-06 53.0 29.6 154 506-668 111-278 (400)
289 3sre_A PON1, serum paraoxonase 97.2 0.057 1.9E-06 55.4 23.1 195 397-616 54-297 (355)
290 2p9w_A MAL S 1 allergenic prot 97.2 0.022 7.6E-07 57.3 19.4 158 506-667 12-215 (334)
291 4hw6_A Hypothetical protein, I 97.2 0.064 2.2E-06 57.1 24.3 192 395-616 184-432 (433)
292 3sov_A LRP-6, low-density lipo 97.2 0.23 7.9E-06 50.2 27.2 193 395-620 37-241 (318)
293 3s94_A LRP-6, low-density lipo 97.2 0.48 1.6E-05 52.7 32.9 155 395-579 86-247 (619)
294 3ei3_A DNA damage-binding prot 97.1 0.66 2.3E-05 55.5 34.3 256 395-672 556-918 (1158)
295 2vpj_A Kelch-like protein 12; 97.1 0.14 4.8E-06 51.1 24.3 142 516-670 113-281 (301)
296 4a0p_A LRP6, LRP-6, low-densit 97.1 0.58 2E-05 52.2 33.1 228 406-675 8-245 (628)
297 2ism_A Putative oxidoreductase 97.0 0.15 5.1E-06 52.5 24.5 229 395-655 33-332 (352)
298 3m0c_C LDL receptor, low-densi 97.0 0.38 1.3E-05 55.1 29.7 155 506-669 423-591 (791)
299 3tc9_A Hypothetical hydrolase; 97.0 0.027 9.1E-07 60.0 18.9 148 508-666 138-300 (430)
300 3a9g_A Putative uncharacterize 97.0 0.18 6.1E-06 51.9 24.5 231 395-655 31-329 (354)
301 2p9w_A MAL S 1 allergenic prot 96.9 0.075 2.6E-06 53.5 19.6 152 444-617 15-215 (334)
302 1bpo_A Protein (clathrin); cla 96.9 0.56 1.9E-05 48.7 27.2 225 413-674 47-296 (494)
303 3ii7_A Kelch-like protein 7; p 96.8 0.38 1.3E-05 48.0 24.8 143 516-670 102-275 (306)
304 2xzh_A Clathrin heavy chain 1; 96.8 0.5 1.7E-05 47.2 26.4 224 413-674 48-297 (365)
305 2xn4_A Kelch-like protein 2; s 96.7 0.41 1.4E-05 47.7 24.4 142 516-670 109-279 (302)
306 3pbp_A Nucleoporin NUP82; beta 96.7 0.076 2.6E-06 55.1 17.9 137 516-654 32-196 (452)
307 3kya_A Putative phosphatase; s 96.6 0.26 8.8E-06 52.8 22.3 152 442-616 139-340 (496)
308 1n7d_A LDL receptor, low-densi 96.5 0.023 7.7E-07 64.6 14.4 198 395-620 408-617 (699)
309 4asc_A Kelch repeat and BTB do 96.4 0.87 3E-05 45.6 26.4 146 516-673 99-283 (315)
310 3das_A Putative oxidoreductase 96.4 1 3.4E-05 45.9 26.9 238 395-655 34-325 (347)
311 1zgk_A Kelch-like ECH-associat 96.4 0.77 2.6E-05 45.8 23.6 142 516-670 122-290 (308)
312 3pbp_A Nucleoporin NUP82; beta 96.2 0.37 1.3E-05 50.0 20.1 159 400-571 28-208 (452)
313 2g8s_A Glucose/sorbosone dehyd 96.2 1.3 4.6E-05 45.2 26.8 64 587-656 271-341 (353)
314 3ott_A Two-component system se 96.2 2.5 8.4E-05 48.3 34.2 229 395-669 24-262 (758)
315 3ii7_A Kelch-like protein 7; p 96.1 0.96 3.3E-05 45.0 22.8 102 516-620 150-275 (306)
316 2vpj_A Kelch-like protein 12; 96.1 1.1 3.7E-05 44.5 22.9 101 516-619 160-280 (301)
317 2xn4_A Kelch-like protein 2; s 96.1 0.69 2.3E-05 46.0 21.4 189 403-619 61-278 (302)
318 3s94_A LRP-6, low-density lipo 96.1 2.4 8.3E-05 47.0 38.0 151 508-667 350-510 (619)
319 3sre_A PON1, serum paraoxonase 95.9 1.5 5E-05 44.8 23.0 132 524-667 82-252 (355)
320 1cru_A Protein (soluble quinop 95.8 2.5 8.6E-05 44.9 29.0 62 395-460 29-98 (454)
321 1uuj_A Platelet-activating fac 95.6 0.0058 2E-07 47.6 2.5 61 6-66 3-65 (88)
322 3ott_A Two-component system se 95.6 4.4 0.00015 46.2 32.3 242 395-671 148-405 (758)
323 2woz_A Kelch repeat and BTB do 95.5 2.4 8.1E-05 42.4 24.6 147 516-674 110-294 (318)
324 2xtc_A F-box-like/WD repeat-co 95.4 0.011 3.9E-07 46.3 3.6 36 6-44 1-36 (90)
325 1bpo_A Protein (clathrin); cla 95.4 3.1 0.0001 43.3 28.4 220 342-618 84-332 (494)
326 2xzh_A Clathrin heavy chain 1; 95.3 2.6 8.9E-05 42.1 27.1 219 343-618 86-333 (365)
327 3s25_A Hypothetical 7-bladed b 95.2 2.9 9.9E-05 41.6 28.1 231 400-690 21-279 (302)
328 4a0p_A LRP6, LRP-6, low-densit 95.1 5.2 0.00018 44.4 42.9 156 508-674 341-514 (628)
329 1zgk_A Kelch-like ECH-associat 94.5 3.1 0.00011 41.2 20.1 100 516-619 169-289 (308)
330 2be1_A Serine/threonine-protei 94.4 0.077 2.6E-06 54.0 7.8 152 517-672 57-236 (339)
331 3a9g_A Putative uncharacterize 94.3 5.2 0.00018 40.8 26.8 60 546-605 259-330 (354)
332 3s25_A Hypothetical 7-bladed b 94.3 4.6 0.00016 40.1 21.7 137 510-669 58-218 (302)
333 2ism_A Putative oxidoreductase 94.3 0.93 3.2E-05 46.4 16.0 104 546-654 31-151 (352)
334 3ei3_A DNA damage-binding prot 94.3 12 0.00041 44.7 33.9 205 406-654 525-753 (1158)
335 4asc_A Kelch repeat and BTB do 94.1 3.3 0.00011 41.2 19.5 100 516-619 149-279 (315)
336 2woz_A Kelch repeat and BTB do 93.8 5.8 0.0002 39.4 21.1 100 516-619 159-289 (318)
337 1cru_A Protein (soluble quinop 93.8 3.8 0.00013 43.4 19.9 100 507-606 27-163 (454)
338 1tl2_A L10, protein (tachylect 93.7 0.65 2.2E-05 43.6 11.7 145 507-660 41-203 (236)
339 1xi4_A Clathrin heavy chain; a 93.5 1.8 6.2E-05 51.8 17.6 221 414-672 48-294 (1630)
340 1tl2_A L10, protein (tachylect 93.1 0.26 8.8E-06 46.3 8.0 110 546-666 41-162 (236)
341 2uvk_A YJHT; unknown function, 92.4 4.2 0.00014 41.3 17.2 54 567-622 286-347 (357)
342 3qhy_B Beta-lactamase inhibito 92.1 5.4 0.00019 39.1 17.0 233 395-680 26-259 (282)
343 2uvk_A YJHT; unknown function, 92.0 11 0.00039 37.9 22.9 140 525-674 168-349 (357)
344 1xi4_A Clathrin heavy chain; a 91.7 9.1 0.00031 46.0 20.3 195 398-622 71-294 (1630)
345 2zwa_A Leucine carboxyl methyl 91.5 11 0.00039 42.2 20.8 190 402-619 396-637 (695)
346 2g8s_A Glucose/sorbosone dehyd 90.8 4.5 0.00015 41.2 15.3 141 508-654 19-214 (353)
347 2be1_A Serine/threonine-protei 89.1 0.56 1.9E-05 47.6 6.5 113 558-676 12-139 (339)
348 3qhy_B Beta-lactamase inhibito 83.1 26 0.0009 34.1 15.1 181 395-617 65-246 (282)
349 3das_A Putative oxidoreductase 83.0 42 0.0014 33.8 29.4 58 547-605 264-326 (347)
350 2zwa_A Leucine carboxyl methyl 81.7 21 0.00073 40.0 15.6 149 516-669 398-579 (695)
351 3sbq_A Nitrous-oxide reductase 79.1 5.4 0.00018 42.8 8.6 134 526-666 299-477 (638)
352 4gq2_M Nucleoporin NUP120; bet 78.2 28 0.00095 40.6 15.4 39 588-626 237-275 (950)
353 2wg3_C Hedgehog-interacting pr 74.4 50 0.0017 34.8 14.8 106 547-654 15-155 (463)
354 4hvt_A Ritya.17583.B, post-pro 71.2 1.4E+02 0.0046 33.4 21.7 133 525-669 269-431 (711)
355 3q6k_A 43.2 kDa salivary prote 70.9 95 0.0033 31.6 18.4 137 525-667 123-306 (381)
356 4gco_A Protein STI-1; structur 68.9 19 0.00065 29.8 8.3 101 20-127 20-125 (126)
357 4gq2_M Nucleoporin NUP120; bet 65.0 99 0.0034 36.0 15.9 36 547-582 237-273 (950)
358 1elw_A TPR1-domain of HOP; HOP 59.0 51 0.0018 25.5 9.0 103 15-124 6-113 (118)
359 2lni_A Stress-induced-phosphop 56.9 51 0.0017 26.4 8.9 108 13-127 16-128 (133)
360 3sbq_A Nitrous-oxide reductase 55.4 21 0.00073 38.3 7.1 94 567-667 299-408 (638)
361 4fhn_B Nucleoporin NUP120; pro 50.8 32 0.0011 41.1 8.6 39 588-626 239-277 (1139)
362 4ga2_A E3 SUMO-protein ligase 50.6 50 0.0017 28.0 8.0 72 51-129 40-111 (150)
363 2k9m_A RNA polymerase sigma fa 50.0 8.7 0.0003 32.6 2.6 88 13-112 21-122 (130)
364 3qou_A Protein YBBN; thioredox 46.9 58 0.002 31.4 8.6 72 51-129 160-231 (287)
365 1na0_A Designed protein CTPR3; 44.3 1.1E+02 0.0037 23.8 8.8 100 19-125 15-119 (125)
366 3mkr_A Coatomer subunit epsilo 43.6 71 0.0024 30.9 8.7 84 15-109 66-157 (291)
367 3u4t_A TPR repeat-containing p 42.6 93 0.0032 28.9 9.3 109 16-128 6-119 (272)
368 3upv_A Heat shock protein STI1 42.5 96 0.0033 24.8 8.2 88 17-110 8-100 (126)
369 4a9v_A PHOX; hydrolase, beta-p 40.6 61 0.0021 35.0 7.8 56 638-699 476-549 (592)
370 4a9v_A PHOX; hydrolase, beta-p 39.3 97 0.0033 33.4 9.1 58 547-604 477-548 (592)
371 3lpz_A GET4 (YOR164C homolog); 38.1 68 0.0023 32.0 7.3 88 46-157 16-106 (336)
372 3zwu_A Alkaline phosphatase PH 37.5 95 0.0032 33.8 9.0 60 588-655 477-548 (592)
373 2j4b_A TAF5, transcription ini 37.0 16 0.00056 31.3 2.3 45 80-125 33-77 (138)
374 2nxp_A Transcription initiatio 36.8 30 0.001 30.3 4.1 48 80-128 52-100 (156)
375 2dba_A Smooth muscle cell asso 36.5 1.7E+02 0.0058 23.6 9.8 107 13-126 28-142 (148)
376 3hym_B Cell division cycle pro 36.3 1.9E+02 0.0065 27.4 10.7 103 18-127 94-203 (330)
377 3ma5_A Tetratricopeptide repea 36.2 39 0.0014 26.2 4.5 72 51-128 16-88 (100)
378 4fhn_B Nucleoporin NUP120; pro 34.8 90 0.0031 37.2 9.0 36 547-582 239-275 (1139)
379 3mkr_A Coatomer subunit epsilo 33.7 1.3E+02 0.0044 29.0 8.7 99 23-129 111-212 (291)
380 2vyi_A SGTA protein; chaperone 33.4 1.7E+02 0.0058 22.7 8.8 100 20-126 19-123 (131)
381 3zwu_A Alkaline phosphatase PH 33.2 1.1E+02 0.0037 33.4 8.5 57 548-604 478-548 (592)
382 2fo7_A Synthetic consensus TPR 33.2 1.7E+02 0.0059 22.7 8.7 101 20-127 8-113 (136)
383 1hxi_A PEX5, peroxisome target 32.9 59 0.002 26.4 5.2 72 50-128 25-96 (121)
384 2dba_A Smooth muscle cell asso 32.9 56 0.0019 26.8 5.2 78 48-129 34-111 (148)
385 2wpv_A GET4, UPF0363 protein Y 31.6 1.2E+02 0.0042 29.8 8.0 23 46-68 17-39 (312)
386 3upv_A Heat shock protein STI1 31.6 63 0.0021 26.0 5.2 72 51-129 13-84 (126)
387 1na3_A Designed protein CTPR2; 31.3 76 0.0026 23.2 5.4 68 52-126 19-86 (91)
388 2vgx_A Chaperone SYCD; alterna 31.3 1.2E+02 0.0041 25.5 7.1 88 16-110 24-117 (148)
389 2xcb_A PCRH, regulatory protei 31.2 65 0.0022 26.8 5.4 72 51-129 27-98 (142)
390 3sz7_A HSC70 cochaperone (SGT) 31.0 1.2E+02 0.0041 25.7 7.2 91 16-112 14-109 (164)
391 3urz_A Uncharacterized protein 30.8 1.8E+02 0.006 26.0 8.7 108 14-128 5-133 (208)
392 2lni_A Stress-induced-phosphop 30.8 61 0.0021 25.9 5.0 72 50-128 24-95 (133)
393 4gco_A Protein STI-1; structur 30.2 65 0.0022 26.4 5.0 72 51-129 22-93 (126)
394 1elw_A TPR1-domain of HOP; HOP 30.1 68 0.0023 24.8 5.1 72 50-128 12-83 (118)
395 3gyz_A Chaperone protein IPGC; 30.0 64 0.0022 27.7 5.1 104 13-129 8-116 (151)
396 2xev_A YBGF; tetratricopeptide 29.5 77 0.0026 25.3 5.4 56 51-110 11-67 (129)
397 3uq3_A Heat shock protein STI1 29.3 1.4E+02 0.0047 27.1 7.9 17 52-68 149-165 (258)
398 2kck_A TPR repeat; tetratricop 29.3 86 0.0029 23.8 5.5 54 52-111 16-69 (112)
399 3as5_A MAMA; tetratricopeptide 28.5 2.3E+02 0.0078 23.7 8.8 101 20-127 15-120 (186)
400 2xcb_A PCRH, regulatory protei 28.3 1.4E+02 0.005 24.5 7.1 91 14-110 19-114 (142)
401 2kc7_A BFR218_protein; tetratr 28.0 83 0.0028 23.8 5.1 57 50-112 8-65 (99)
402 2kck_A TPR repeat; tetratricop 28.0 1E+02 0.0036 23.3 5.8 87 22-112 15-107 (112)
403 3sz7_A HSC70 cochaperone (SGT) 27.9 73 0.0025 27.2 5.2 73 50-129 19-91 (164)
404 1hxi_A PEX5, peroxisome target 27.6 85 0.0029 25.3 5.3 90 15-110 19-113 (121)
405 2d68_A FOP, FGFR1OP; alpha hel 27.3 47 0.0016 25.4 3.1 29 15-43 20-48 (82)
406 2vgx_A Chaperone SYCD; alterna 27.3 83 0.0028 26.6 5.4 72 51-129 30-101 (148)
407 3gyz_A Chaperone protein IPGC; 27.2 1.6E+02 0.0054 25.1 7.2 93 14-112 37-134 (151)
408 1vk8_A Hypothetical protein TM 26.5 6.3 0.00021 32.1 -2.0 36 32-68 37-72 (106)
409 4gcn_A Protein STI-1; structur 26.4 1.3E+02 0.0043 24.5 6.2 101 23-125 18-124 (127)
410 3q49_B STIP1 homology and U bo 26.2 2E+02 0.0067 23.0 7.6 91 14-110 10-105 (137)
411 2pl2_A Hypothetical conserved 26.0 1.9E+02 0.0066 25.9 8.1 109 17-129 9-130 (217)
412 2fo7_A Synthetic consensus TPR 25.9 2.2E+02 0.0075 22.0 7.8 84 20-109 41-130 (136)
413 1zi0_A DNA gyrase subunit A; b 25.8 4.6E+02 0.016 25.4 25.2 200 402-616 1-225 (307)
414 2r5s_A Uncharacterized protein 25.5 1.9E+02 0.0066 24.7 7.7 108 15-129 8-120 (176)
415 1elr_A TPR2A-domain of HOP; HO 25.2 2E+02 0.0068 22.3 7.3 109 17-127 8-122 (131)
416 1na0_A Designed protein CTPR3; 24.8 1E+02 0.0036 23.8 5.4 71 50-127 17-87 (125)
417 3f7f_A Nucleoporin NUP120; nuc 24.7 1E+02 0.0035 34.2 6.5 37 507-543 222-259 (729)
418 2vyi_A SGTA protein; chaperone 24.2 1.1E+02 0.0037 24.0 5.4 72 50-128 20-91 (131)
419 2c9l_Y EB1, zebra, BZLF1 trans 23.9 38 0.0013 23.0 1.7 15 175-189 37-51 (63)
420 2l6j_A TPR repeat-containing p 23.9 1.4E+02 0.0047 22.8 5.8 56 51-112 13-68 (111)
421 1vi0_A Transcriptional regulat 23.4 54 0.0018 29.6 3.5 62 1-65 1-71 (206)
422 2nsz_A Programmed cell death p 23.3 1.4E+02 0.0047 24.9 5.8 60 89-163 14-74 (129)
423 4hvt_A Ritya.17583.B, post-pro 23.1 7.9E+02 0.027 27.1 26.0 95 524-619 319-431 (711)
424 3ct5_A Morphogenesis protein 1 23.0 40 0.0014 29.6 2.4 41 5-45 6-51 (159)
425 2q7f_A YRRB protein; TPR, prot 22.7 2.3E+02 0.008 25.2 8.1 80 25-110 69-153 (243)
426 2ho1_A Type 4 fimbrial biogene 22.6 4E+02 0.014 23.9 9.8 111 10-127 68-185 (252)
427 1q47_A Semaphorin 3A; beta pro 22.3 3.3E+02 0.011 28.7 9.8 66 547-612 405-487 (495)
428 3q49_B STIP1 homology and U bo 22.0 1.2E+02 0.0042 24.3 5.4 73 50-129 17-89 (137)
429 3as5_A MAMA; tetratricopeptide 21.8 1.7E+02 0.0058 24.6 6.5 72 50-128 16-87 (186)
430 3hym_B Cell division cycle pro 21.8 3.1E+02 0.011 25.8 9.2 106 16-128 25-136 (330)
431 1a17_A Serine/threonine protei 21.6 3.3E+02 0.011 22.2 8.7 87 19-111 19-110 (166)
432 1zbp_A Hypothetical protein VP 21.5 61 0.0021 31.1 3.4 68 20-94 4-76 (273)
433 2q7f_A YRRB protein; TPR, prot 21.4 3.9E+02 0.013 23.7 9.4 105 16-127 26-135 (243)
434 2dah_A Ubiquilin-3; UBA domain 21.3 1E+02 0.0034 21.4 3.6 31 21-66 13-46 (54)
435 3vtx_A MAMA; tetratricopeptide 21.0 3.8E+02 0.013 22.6 9.1 16 94-109 119-134 (184)
436 3b7f_A Glycosyl hydrolase, BNR 20.9 6.2E+02 0.021 25.1 28.0 95 507-604 177-296 (394)
437 4a18_Q RPL36, 60S ribosomal pr 20.7 54 0.0018 26.1 2.3 48 80-128 49-99 (104)
438 2xz2_A CSTF-50, isoform B; RNA 20.6 1.1E+02 0.0037 22.2 3.6 32 12-43 15-46 (66)
439 3f7f_A Nucleoporin NUP120; nuc 20.6 1E+02 0.0036 34.2 5.5 37 588-626 223-259 (729)
440 1oyi_A Double-stranded RNA-bin 20.6 63 0.0022 24.7 2.7 31 13-45 15-45 (82)
441 2xev_A YBGF; tetratricopeptide 20.4 3.1E+02 0.011 21.4 8.7 92 17-112 6-106 (129)
442 4g26_A Pentatricopeptide repea 20.2 2.1E+02 0.0073 30.2 7.9 104 18-127 110-220 (501)
443 2fbn_A 70 kDa peptidylprolyl i 20.0 3.9E+02 0.013 23.1 8.8 72 51-129 97-168 (198)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-42 Score=375.82 Aligned_cols=366 Identities=14% Similarity=0.199 Sum_probs=247.2
Q ss_pred cchhhhhhHhhhccchhhhhhhhhhccCccccc--ccccccccccccccccccccccccccccccccchhhcccccceee
Q 005342 195 KEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYL 272 (701)
Q Consensus 195 ~~~~~~l~~q~l~~~~~~~~~~~l~~es~~~~~--~~~~~~~i~~g~~~~~e~~l~~~~~~~~~~~s~~~~~~~~~q~~~ 272 (701)
++++.+++.|+|++.+|.+++..+++|.+...+ ...+...++.+.|....++-.....++.... ...+ .+
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~------~~~~-~~- 79 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLN------EAKE-EF- 79 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHHHHH------HHHH-HH-
Confidence 678999999999999999999999999876533 4445566777888766543221110000000 0000 00
Q ss_pred eeecccccccccccccccccccchhhhhhcccc-cCcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCC
Q 005342 273 EAVDRQQKLPSDFAERAHLFDDFKVLVERNPML-QDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNE 344 (701)
Q Consensus 273 ~~~~~~~~~~~~~~dr~~~~~~~~~l~~~~~~l-a~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~ 344 (701)
....+.- ......|... ......+.+|.+.|. +++|+|+ +.|+
T Consensus 80 --------------------------~~~~~~~~~~~~~~~~~~-~~~~~~l~gh~~~V~--~~~~~p~~~~l~s~s~Dg 130 (410)
T 1vyh_C 80 --------------------------TSGGPLGQKRDPKEWIPR-PPEKYALSGHRSPVT--RVIFHPVFSVMVSASEDA 130 (410)
T ss_dssp --------------------------------------CCCCCC-SSCSCEEECCSSCEE--EEEECSSSSEEEEEESSS
T ss_pred --------------------------hccCCccccCCccccccC-CCceEeecccCCcEE--EEEEcCCCCEEEEEeCCC
Confidence 0000000 0112233322 223456789999999 9999999 7899
Q ss_pred eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccc
Q 005342 345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQL 423 (701)
Q Consensus 345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~ 423 (701)
+|++||+.++..... +.+|.. |.+++|+|+|++|++|+.|++|++||+.
T Consensus 131 ~i~vwd~~~~~~~~~-----------------------------l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~- 180 (410)
T 1vyh_C 131 TIKVWDYETGDFERT-----------------------------LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ- 180 (410)
T ss_dssp CEEEEETTTCCCCEE-----------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-
T ss_pred eEEEEECCCCcEEEE-----------------------------EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence 999999998877665 246777 9999999999999999999999999997
Q ss_pred cCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC
Q 005342 424 INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 503 (701)
Q Consensus 424 ~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~ 503 (701)
.+++.. ...+|...|.+++|+|+|+++++|+.|+.|++||+ .++.++.. + .
T Consensus 181 ---~~~~~~---~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~---------------------~~~~~~~~-~-~ 231 (410)
T 1vyh_C 181 ---GFECIR---TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV---------------------QTGYCVKT-F-T 231 (410)
T ss_dssp ---SSCEEE---CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET---------------------TTCCEEEE-E-E
T ss_pred ---CCceeE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-E-e
Confidence 555555 45678999999999999999999999999999965 45554432 3 4
Q ss_pred CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC--------------------C-eE
Q 005342 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ--------------------D-LF 559 (701)
Q Consensus 504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd--------------------g-~l 559 (701)
+|...|.+++++ |.++++|+ |+.|++||+.+++....+.+|...|.+++|+|+ | ++
T Consensus 232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 788999999999 88999999 999999999999999999999999999999996 6 89
Q ss_pred EEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342 560 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (701)
Q Consensus 560 ~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~ 639 (701)
++|+.|+.|++||++++..+..+.+|...|++++|+|+|++|++|+.|++|++||+.+++.. ..+. +|. ..
T Consensus 312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~--~~~~----~h~---~~ 382 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--KTLN----AHE---HF 382 (410)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC--EEEE----CCS---SC
T ss_pred EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--EEEc----CCC---Cc
Confidence 99999999999999999999999999999999999999999999999999999999987532 2333 565 89
Q ss_pred eEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 640 VNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 640 v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
|++++|+|++++|++| .|++|+||++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999996 7999999986
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-40 Score=359.30 Aligned_cols=249 Identities=17% Similarity=0.241 Sum_probs=222.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||+.++++...+.+|.+.|. +++|+|+ +.|++|++||+.+++++.. +
T Consensus 130 g~i~vwd~~~~~~~~~l~~h~~~V~--~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~----------~--------- 188 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLLASCSADMTIKLWDFQGFECIRT----------M--------- 188 (410)
T ss_dssp SCEEEEETTTCCCCEEECCCSSCEE--EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC----------C---------
T ss_pred CeEEEEECCCCcEEEEEeccCCcEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE----------E---------
Confidence 8999999999999999999999999 9999998 8999999999998887766 2
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
.+|.. |.+++|+|++++|++|+.|++|++||+. ++.+.. .+.+|...|.++.|+|+|.++++
T Consensus 189 ----------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~----~~~~~~---~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 189 ----------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVK---TFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp ----------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECTTSSEEEE
T ss_pred ----------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEeCCCccEEEEEECCCCCEEEE
Confidence 46777 9999999999999999999999999998 565544 23468899999999999999999
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----------------------C
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------------------G 516 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----------------------~ 516 (701)
|+.||.|++||+ .++.+... + .+|...|.+++|+ |
T Consensus 252 ~s~D~~v~vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 252 CSNDQTVRVWVV---------------------ATKECKAE-L-REHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp EETTSCEEEEET---------------------TTCCEEEE-E-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred EcCCCeEEEEEC---------------------CCCceeeE-e-cCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 999999999966 34443322 2 3677888888886 2
Q ss_pred CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~ 594 (701)
.++++|+ |+.|++||++++.++..+.+|...|++++|+|+| +|++|+.||.|++||+.+++.+..+.+|...|++++|
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 388 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE
Confidence 4799999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECC
Q 005342 595 SLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 595 spdg~~l~s~s~D~~I~vwd~~ 616 (701)
+|++++|++|+.|++|++|+++
T Consensus 389 ~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 389 HKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSSSCEEEEETTSEEEEEC--
T ss_pred cCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999864
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-39 Score=366.84 Aligned_cols=334 Identities=10% Similarity=0.062 Sum_probs=262.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc----
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL---- 375 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~---- 375 (701)
+.|++||+.+++....+.+|.+.|. +++|||+ +.|++|+|||+.++..... ..+.+|..
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~--~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~--------~~~~~~~~~v~~ 108 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTT--VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK--------TTIPVFSGPVKD 108 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEE--EEEECTTSSEEEEEETTSEEEEEESSSTTCCEE--------EEEECSSSCEEE
T ss_pred CEEEEecCCCcccCeEecCCCCceE--EEEECCCCcEEEEEeCCCCEEEeECCCCcceee--------EeecccCCceEE
Confidence 7899999999999999999999999 9999999 7899999999976554321 11333322
Q ss_pred ---------ccccC-CC----C----CCCc---cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeE
Q 005342 376 ---------DASSG-DD----S----NDSS---CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRT 432 (701)
Q Consensus 376 ---------~~s~~-D~----~----~~~~---~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~ 432 (701)
+++++ |. . +.+. .+.+|.. |++++|+|++. .|++|+.|++|++||.. ++++..
T Consensus 109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~ 184 (611)
T 1nr0_A 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKS 184 (611)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT----TBEEEE
T ss_pred EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC----CCeEee
Confidence 33322 11 1 2222 2789999 99999999987 59999999999999986 555444
Q ss_pred eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc------CCCC
Q 005342 433 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA------ADPK 506 (701)
Q Consensus 433 l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~------~~~~ 506 (701)
.+.+|...|.+++|+|||++|++|+.|++|++||.. +++.... +. .+|.
T Consensus 185 ---~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~---------------------~g~~~~~-~~~~~~~~~~h~ 239 (611)
T 1nr0_A 185 ---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV---------------------DGTKTGV-FEDDSLKNVAHS 239 (611)
T ss_dssp ---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------------TCCEEEE-CBCTTSSSCSSS
T ss_pred ---eeccccCceEEEEECCCCCEEEEEECCCcEEEEECC---------------------CCcEeee-eccccccccccC
Confidence 345799999999999999999999999999999763 3332221 11 1689
Q ss_pred CCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-------------------------------------------E
Q 005342 507 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-------------------------------------------T 540 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-------------------------------------------~ 540 (701)
..|.+++|+ |++|++++ |++|++||+.+++.+. .
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 999999999 88999999 9999999998876543 3
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cC----------------------------------
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KG---------------------------------- 584 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~---------------------------------- 584 (701)
+.+|...|++++|+|+| ++++++.|++|++||+.+++....+ .+
T Consensus 320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 34788899999999999 9999999999999999876543322 11
Q ss_pred -----------------------------------------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 585 -----------------------------------------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 585 -----------------------------------------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
|...+.+++|+|||++||+|+.|++|++||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 223467899999999999999999999999988
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC-Cceeee--ee---e-eeEEEEEeeEE
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQ--VL---L-ISHIMFVQIVV 687 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~-g~~~~~--l~---~-i~~~~fs~~~~ 687 (701)
+.... +. . .+|. ..|++++|+|||++|+++ .|++|++||+.+ ++++.. +. . |++++|||+..
T Consensus 480 ~~~~~---~~-~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 480 ASVSE---VK-T-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp TEEEE---EE-E-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred Cceee---ee-c-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence 64322 22 1 2454 899999999999999996 799999999987 666554 22 2 99999999753
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-39 Score=366.39 Aligned_cols=331 Identities=15% Similarity=0.171 Sum_probs=263.9
Q ss_pred cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
.|++|| +++....+.+|.+.|. +++|+|+ +.|++|++||..++++...
T Consensus 130 ~v~~wd--~~~~~~~l~gh~~~v~--~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~-------------------- 185 (611)
T 1nr0_A 130 HVFLFD--TGTSNGNLTGQARAMN--SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-------------------- 185 (611)
T ss_dssp EEEETT--TCCBCBCCCCCSSCEE--EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------------------
T ss_pred EEEEee--CCCCcceecCCCCCce--EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------------------
Confidence 577777 5777788999999999 9999998 7899999999887766555
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee----cCCCCCCCCEEEEEEecCCC
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL----LPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~----~~~~~~~~~v~~l~~spdg~ 454 (701)
+.+|.. |++++|+|||++|++|+.|++|++||+. .+++.... ....+|.+.|.+++|+|||+
T Consensus 186 ---------l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 186 ---------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp ---------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred ---------eccccCceEEEEECCCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 346777 9999999999999999999999999987 45443311 01126899999999999999
Q ss_pred EEEEEECCCcEEEEecCCCCcc----c--------------ccccc----ceeeEEeeCCCCeEEeecccCCCCCCeEEE
Q 005342 455 FLVALTQTATHKLWKWQSNKQS----L--------------EEENV----NMESQLYQPSSKLVMTNDIAADPKDSISCF 512 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~----~--------------g~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l 512 (701)
+|++++.|++|++||+.++... . +.... ...+++|++.++..... + .+|...|.++
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~-~-~gh~~~v~~l 330 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV-R-YGHNKAITAL 330 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE-E-CCCSSCEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE-E-cCCCCCEEEE
Confidence 9999999999999999776531 0 11111 12378999888875542 2 5899999999
Q ss_pred Eec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-cC---------------------------------------------
Q 005342 513 ALR--GSHLFSAS-GGKISIFSLETFQTLATF-AN--------------------------------------------- 543 (701)
Q Consensus 513 ~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~--------------------------------------------- 543 (701)
+|+ |++|++++ |+.|++||+.+++....+ .+
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence 999 89999999 999999999876543321 00
Q ss_pred ------------------------------------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce--EEeecC
Q 005342 544 ------------------------------------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG 584 (701)
Q Consensus 544 ------------------------------------~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~--~~~l~~ 584 (701)
+...+.+++|+||| ++++|+.|++|++||+.++.. +.. .+
T Consensus 411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~ 489 (611)
T 1nr0_A 411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV 489 (611)
T ss_dssp SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence 12346789999999 999999999999999987653 344 67
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-Ceeeeeeeeee-ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEE
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 661 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~-~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~ 661 (701)
|...|++++|+|||++|++++.|++|++||+.+ ++. +.. ...+|. ..|++++|+|||++|++| .|++|+
T Consensus 490 h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~-----~~~~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-----AHTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-----SCCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce-----eeeeeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence 999999999999999999999999999999987 432 111 223465 899999999999999996 799999
Q ss_pred EEECCCCc-ee-eeee----e-eeEEEEEeeE
Q 005342 662 VYEAPTLN-HT-SQVL----L-ISHIMFVQIV 686 (701)
Q Consensus 662 iwd~~~g~-~~-~~l~----~-i~~~~fs~~~ 686 (701)
+||+.+++ .+ ..+. . |++++|+|+.
T Consensus 562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred EEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence 99998875 33 3432 2 9999999875
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=335.53 Aligned_cols=282 Identities=16% Similarity=0.135 Sum_probs=240.2
Q ss_pred cceeEEEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCC
Q 005342 317 SRLLSLIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSND 385 (701)
Q Consensus 317 ~~~~~~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~ 385 (701)
+.+...+++|.+.|+ +++|+|+ +.|++|+|||+.++.....
T Consensus 22 g~~~~~~~~H~~~V~--~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-------------------------- 73 (321)
T 3ow8_A 22 GILFKQEQAHDDAIW--SVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-------------------------- 73 (321)
T ss_dssp EEEEEETTSSSSCEE--EEEEC-------CEEEEEETTSCEEEEEEETTEEEEE--------------------------
T ss_pred hheeeecccCCCcEE--EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee--------------------------
Confidence 455666789999999 9999874 8899999999987654222
Q ss_pred CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
..+.+|.. |.+++|+|++.++++|+.|++|++||+. .+++.. ....+...+.+++|+|+|+++++|+.||.
T Consensus 74 -~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~----~~~~~~---~~~~~~~~~~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 74 -WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE----NGKQIK---SIDAGPVDAWTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp -EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEE---EEECCTTCCCCEEECTTSSEEEEECTTSE
T ss_pred -eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC----CCCEEE---EEeCCCccEEEEEECCCCCEEEEEcCCCc
Confidence 12457888 9999999999999999999999999997 554433 12246778999999999999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+++|++ .++..... + ..|...|.+++|+ |++|++++ ||.|++||+++++.+..+
T Consensus 146 v~i~~~---------------------~~~~~~~~-~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 146 VNIFGV---------------------ESGKKEYS-L-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp EEEEET---------------------TTCSEEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEc---------------------CCCceeEE-e-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 999976 33332221 2 3567789999999 89999999 999999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
.+|..+|.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999753
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
. .. +. +|. ..|++++|+|+|++|+++ .|++|+|||..
T Consensus 283 ~--~~---~~-~h~---~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 283 V--HT---FF-DHQ---DQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp E--EE---EC-CCS---SCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred E--EE---Ec-CCC---CcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 2 22 22 555 899999999999999985 89999999973
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.4e-39 Score=342.83 Aligned_cols=307 Identities=12% Similarity=0.118 Sum_probs=251.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
..+..|+..+..+.+++.+|.+.|. +++|+|+ +.|++|+|||+.++.....
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~--~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-------------------- 103 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVY--SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-------------------- 103 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEE--EEEECTTSSCEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred ccccccccceeEEeecccccccEEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCccceE--------------------
Confidence 3456788888899999999999999 9999999 8999999999998877665
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC-CEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLV 457 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg-~~l~ 457 (701)
+.+|.. |.+++|+|+|++|++|+.|+.+++|++...........+.....+|.+.|.++.|+|++ ..|+
T Consensus 104 ---------~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 104 ---------IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp ---------EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred ---------EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 235666 88999999999999999999999999863221111011111345789999999999974 5799
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee---cccCCCCCCeEEEEec---CCEEEEEe-CCeEEEE
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN---DIAADPKDSISCFALR---GSHLFSAS-GGKISIF 530 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iw 530 (701)
+|+.|++|++||+.+ ++.+.. .+..+|...|.+++++ ++++++|+ |+.|++|
T Consensus 175 s~s~D~~i~~wd~~~---------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTT---------------------GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp EECTTSCEEEECTTT---------------------CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred EECCCCcEEEEEcCC---------------------CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 999999999997643 332211 1224788999999996 78999999 9999999
Q ss_pred eCC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-------CCeEEEEEecCCCEE
Q 005342 531 SLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-------NRITCLAYSLSLNVL 601 (701)
Q Consensus 531 d~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-------~~V~~v~~spdg~~l 601 (701)
|++ +++.+..+.+|...|.+++|+|++ ++++|+.||+|++||+++++.+..+..+. ..|++++|+|+|++|
T Consensus 234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 313 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313 (380)
T ss_dssp ETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE
T ss_pred ECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE
Confidence 997 457888999999999999999999 99999999999999999999888876543 248999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
++|+.||.|++||+..++.. ..+..+..+|. +.|++++|+|||++|++| .|++|+||++..++.
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMV--LNLGTLQNSHE---GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEECTTSCEEEEETTTCCEE--EEECCSCSSCC---CCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEECCCCEEEEECCCCceE--EEEecccCCCC---CceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 99999999999999987633 23332334665 899999999999999997 799999999976643
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-37 Score=326.91 Aligned_cols=282 Identities=13% Similarity=0.145 Sum_probs=239.8
Q ss_pred ccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 388 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~ 388 (701)
..+....+.+|.+.|. +++|+|+ +.|++|++||+.++..+..+
T Consensus 44 ~~~~~~~l~gH~~~v~--~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---------------------------- 93 (340)
T 1got_B 44 QMRTRRTLRGHLAKIY--AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---------------------------- 93 (340)
T ss_dssp CCCEEEEECCCSSCEE--EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE----------------------------
T ss_pred cchhheeecCCCCceE--EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe----------------------------
Confidence 3466788999999999 9999999 89999999999988776652
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
..|.. |.+++|+|+|+++++|+.|+.+++|++........... ...+|.+.|.++.|++++. +++++.|+.|++
T Consensus 94 -~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~ 168 (340)
T 1got_B 94 -PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCAL 168 (340)
T ss_dssp -ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE---EEECCSSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred -ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE---EecCCCccEEEEEECCCCc-EEEEECCCcEEE
Confidence 35666 99999999999999999999999999973221111111 2346889999999999886 899999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
||+ .++..+.. + .+|...|.+++|+ +.++++|+ |+.|++||++++..+..+.+|
T Consensus 169 wd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 169 WDI---------------------ETGQQTTT-F-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp EET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred EEC---------------------CCCcEEEE-E-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 965 55554432 3 4789999999999 88999999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...|++++|+|++ ++++|+.||+|++||+++++.+..+.. +...|++++|+|+|++|++|+.|+.|++||+.+++..
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 9999999999999 999999999999999999888777653 3357999999999999999999999999999987532
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
..+. +|. ..|++++|+|+|++|++| .|++|+|||
T Consensus 306 --~~~~----~h~---~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 --GVLA----GHD---NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --EEEE----CCS---SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --eEee----cCC---CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2233 665 899999999999999996 799999997
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-37 Score=320.60 Aligned_cols=282 Identities=15% Similarity=0.205 Sum_probs=236.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+...++.+|.+.|. +++|+|+ +.|++|++||+.++..+..+ .
T Consensus 4 ~~~~~~~~h~~~V~--~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-----------------------------~ 52 (304)
T 2ynn_A 4 DIKKTFSNRSDRVK--GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-----------------------------Q 52 (304)
T ss_dssp CCEEEEEEECSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------E
T ss_pred eeEEeecCCCCceE--EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-----------------------------e
Confidence 45678899999999 9999999 78999999999998876662 3
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
+|.. |.+++|+|++++|++|+.|+.|++||+. ++++.. ...+|...|.+++|+|+++++++|+.||+|++||
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVV---DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC----CCcEEE---EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence 5666 9999999999999999999999999998 555443 2346899999999999999999999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NP 544 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~ 544 (701)
+. ++......+ .+|...|.+++|+ +..+++|+ |+.|++||+.++.....+. ++
T Consensus 126 ~~---------------------~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 126 WE---------------------NNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp GG---------------------GTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred CC---------------------CCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 63 232111112 4789999999998 57899999 9999999998877655554 45
Q ss_pred CCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...+..+.++| ++ ++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.+++..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 67899999987 66 9999999999999999999999999999999999999999999999999999999999997533
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEEecCeEEEEECCCC
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL 668 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg~Dg~I~iwd~~~g 668 (701)
.. +. .|. ..+.+++|+|++. ++++|.|+.+.+|++.+.
T Consensus 264 --~~---~~-~~~---~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 264 --KT---LN-VGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp --EE---EC-CSS---SSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred --ee---cc-CCC---ccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 22 32 343 7899999999875 578888888999998653
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=326.93 Aligned_cols=302 Identities=15% Similarity=0.141 Sum_probs=236.8
Q ss_pred ccceeEEEeecCc-ceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 316 KSRLLSLIKQIMD-WWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 316 ~~~~~~~l~~h~~-~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
+.+++..+.+|.+ .|+ +++|+|+ +.|++|+|||+.++..... ..
T Consensus 4 ~~~~~~~~~~h~~~~v~--~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------~~ 55 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCW--FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------SV 55 (345)
T ss_dssp CEEEEEEECCSTTSCEE--EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------EE
T ss_pred cEEEeeeecCCCCCcEE--EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------ee
Confidence 3467888999988 899 9999999 8899999999988754322 00
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
...+|.. |.+++|+|+|++|++|+.|+++++|++. .+....+. ...+|...|.+++|+|+|++|++|+.|+.|+
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~----~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~ 130 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN----QDDFECVT-TLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC----CC-EEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc----CCCeEEEE-EccCCCCCceEEEEeCCCCEEEEEECCCeEE
Confidence 1247888 9999999999999999999999999987 33322111 3356899999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc--EEEEe
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATF 541 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~--~~~~~ 541 (701)
+||+.... ...++.. + .+|...|.+++|+ +.+|++++ |+.|++||.+++. ....+
T Consensus 131 iwd~~~~~------------------~~~~~~~-~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 131 VWEVDEED------------------EYECVSV-L-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp EEEECTTS------------------CEEEEEE-E-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEECCCCC------------------CeEEEEE-e-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence 99874321 1112221 2 4788999999999 88999999 9999999998775 45788
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---------------ceEEeecC-CCCCeEEEEEecCCCEEEEE
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---------------KTKAKLKG-HQNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~---------------~~~~~l~~-h~~~V~~v~~spdg~~l~s~ 604 (701)
.+|...|++++|+|+| +|++|+.|++|++||.... +.+..+.+ |...|.+++|+|++..|+++
T Consensus 191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence 8999999999999999 9999999999999996321 33455665 88899999999999999999
Q ss_pred eCCCeEEEEECCCCeee----eeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCceeeee
Q 005342 605 GADAQLCVWDAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~----~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~~~l 674 (701)
+.|+.|++|+...+... ...... ...+|. ..|++++|+|++ .+|+++ .||+|++|++.+++.....
T Consensus 271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~h~---~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQPTFSLTAH-LHQAHS---QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSCEEEEEECTTSCTTSCCEEEEEE-ETTSSS---SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eCCCeEEEEEeCCCCCcceeeEEEEee-eccccc---CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 99999999998765311 111112 234565 899999999998 488885 8999999999988876544
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-37 Score=321.86 Aligned_cols=290 Identities=15% Similarity=0.146 Sum_probs=236.4
Q ss_pred ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
.+..++.+|.+.|. +++|+|+ +.|++|++|++.+....... ....+
T Consensus 8 ~l~~~l~gH~~~V~--~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~------------------------~~~~~ 61 (319)
T 3frx_A 8 VLRGTLEGHNGWVT--SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV------------------------PVRSF 61 (319)
T ss_dssp EEEEEECCCSSCEE--EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE------------------------EEEEE
T ss_pred EEEEEEccccceEE--EEEccCCCccEEEEecCCccEEEecCCCCCccccc------------------------cceEE
Confidence 56678999999999 9999985 89999999999754322110 12235
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.+|.. |.+++|+|+|++|++|+.|++|++||+. ++++.. .+.+|...|.+++|+|++.++++|+.|+.|++|
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA----TGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC----CCCeeE---EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 68888 9999999999999999999999999998 565544 234689999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C------CEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G------SHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~------~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
|+ ....+.. + .+|...|.+++++ + ..+++++ |+.|++||+++++...
T Consensus 135 d~---------------------~~~~~~~--~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 190 (319)
T 3frx_A 135 TI---------------------KGQCLAT--L-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190 (319)
T ss_dssp ET---------------------TSCEEEE--E-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EC---------------------CCCeEEE--E-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence 76 2222221 2 3788899999997 2 2788888 9999999999999999
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
.+.+|...|.+++|+|+| +|++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+
T Consensus 191 ~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 999999999999999999 9999999999999999999999988854 679999999999999988765 5999999885
Q ss_pred eeeeeeeeee-ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 619 KKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 619 ~~~~~~~l~~-~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
.... .+.. .......+...+.+++|+|||++|++| .|+.|+|||+.++
T Consensus 269 ~~~~--~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 269 YLVD--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEE--EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeee--ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 4322 1210 111111122678999999999999996 7999999999765
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=328.05 Aligned_cols=301 Identities=14% Similarity=0.099 Sum_probs=224.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
...+.|++.+... ..|...|. +++|+|| +.|+++++||......... ...+.
T Consensus 14 ~~~r~w~~~~~~~----~~~~~~v~--~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~----------~~~~~------ 71 (344)
T 4gqb_B 14 PAAREWNLPPNAP----ACMERQLE--AARYRSDGALLLGASSLSGRCWAGSLWLFKDP----------CAAPN------ 71 (344)
T ss_dssp ---------CCSC----SSCCSEEE--EEEECTTSCEEEEEECCSSSCCCEEEEEESSG----------GGTTC------
T ss_pred ccccccCCCCCCc----ccccCCEE--EEEECCCCCEEEEEeCCceEEeeceeeeeccc----------cccCC------
Confidence 3456777765543 34666788 9999999 5588889997542211110 00110
Q ss_pred CCCCCCcc--ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEE
Q 005342 381 DDSNDSSC--FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 381 D~~~~~~~--l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
...+ ...|.. |.+++|+|++ .|++|+.||+|++||+. ++++. .......+|.+.|.+++|+|+|++|
T Consensus 72 ----~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~----~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l 142 (344)
T 4gqb_B 72 ----EGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD----ENETLIVSKFCKYEHDDIVSTVSVLSSGTQA 142 (344)
T ss_dssp ----GGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC----TTSSCEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ----cceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc----CCCceeEeeccccCCCCCEEEEEECCCCCEE
Confidence 0111 224455 9999999995 68899999999999998 44332 2222334689999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSL 532 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~ 532 (701)
++|+.||+|++||+ .+++++.. + .+|...|.+++|+ + .++++++ |+.|++||+
T Consensus 143 ~sgs~d~~i~iwd~---------------------~~~~~~~~-~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 143 VSGSKDICIKVWDL---------------------AQQVVLSS-Y-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEeCCCeEEEEEC---------------------CCCcEEEE-E-cCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 99999999999955 56665543 3 5799999999998 4 5788998 999999999
Q ss_pred CCCcEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCC
Q 005342 533 ETFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGAD 607 (701)
Q Consensus 533 ~~~~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~s~s~D 607 (701)
++++....+. .+...+.+++|+|++ ++++|+.||.|++||+++++.+..+.+|...|++++|+|++ ++||+|+.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 9999888774 345678999999976 88999999999999999999999999999999999999997 589999999
Q ss_pred CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCCcee
Q 005342 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g~~~ 671 (701)
++|+|||+.+++.. . + .+|. ..|++++|+|+++ +|+++ .|++|++|++.+....
T Consensus 280 ~~i~vwd~~~~~~~---~---~-~~H~---~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 280 CSLAVLDSSLSELF---R---S-QAHR---DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp SCEEEECTTCCEEE---E---E-CCCS---SCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred CeEEEEECCCCcEE---E---E-cCCC---CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99999999997532 1 2 2666 8999999999986 45564 7999999999876543
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-36 Score=341.72 Aligned_cols=274 Identities=15% Similarity=0.208 Sum_probs=228.4
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |.+++|+|+|++|++++.|+.|++|+.. ++... ...+|...|.+++|+|+++.+++++.|+.+++
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~---~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQ---TLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----SCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-----CCEEE---EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 567777 8888888888888888888889998864 33333 23458899999999999999999999999999
Q ss_pred EecCCCCc----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C
Q 005342 468 WKWQSNKQ----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 524 (701)
Q Consensus 468 wd~~~~~~----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d 524 (701)
||...... +.+..... -.+++|+.....+.. + .+|...|.+++++ |+++++++ |
T Consensus 289 w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~--~-~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT--L-TGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE--E-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE--E-eCCCCCEEEEEECCCCCEEEEEeCC
Confidence 99754432 12222221 138899987766543 2 4788999999999 88999999 9
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
|.|++||. +++.+..+.+|...|++++|+|+| ++++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 99999996 678888999999999999999999 9999999999999995 67888899999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----ee
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----IS 678 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~ 678 (701)
++.|++|++||.... . ...+. +|. ..|++++|+||+++|+++ .|++|++||. ++++++++.+ |+
T Consensus 444 ~~~d~~v~~w~~~~~-~--~~~~~----~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 444 ASDDKTVKLWNRNGQ-L--LQTLT----GHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 512 (577)
T ss_dssp EETTSEEEEEETTSC-E--EEEEE----CCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred EcCCCEEEEEECCCC-E--EEEEc----CCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEE
Confidence 999999999997542 1 12222 555 899999999999999996 7999999995 7899999887 99
Q ss_pred EEEEEeeE
Q 005342 679 HIMFVQIV 686 (701)
Q Consensus 679 ~~~fs~~~ 686 (701)
+++|+|+.
T Consensus 513 ~l~~s~dg 520 (577)
T 2ymu_A 513 GVAFSPDG 520 (577)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCC
Confidence 99999874
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-36 Score=342.16 Aligned_cols=324 Identities=15% Similarity=0.192 Sum_probs=271.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||. +++.+..+.+|...|. +++|+|+ +.|++|++||.. ++.+..
T Consensus 202 ~~v~~w~~-~~~~~~~~~~~~~~v~--~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~-------------------- 257 (577)
T 2ymu_A 202 KTVKLWNR-NGQLLQTLTGHSSSVR--GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT-------------------- 257 (577)
T ss_dssp SEEEEECT-TSCEEEEEECCSSCEE--EEEECTTSSCEEEEETTSCEEEECTT-SCEEEE--------------------
T ss_pred CEEEEEeC-CCcEEEEEecCCCCEE--EEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE--------------------
Confidence 88999995 6788999999999999 9999998 789999999953 343333
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
+.+|.. |.+++|+|+++.+++++.|+.+++|+.. ++... ...+|...|.+++|+|+++.+++
T Consensus 258 ---------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-----~~~~~---~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 258 ---------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-----GQLLQ---TLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp ---------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred ---------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-----CcEEE---EEecCCCCeEEEEECCCCCEEEE
Confidence 246777 9999999999999999999999999974 33333 23468899999999999999999
Q ss_pred EECCCcEEEEecCCCCc----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C
Q 005342 459 LTQTATHKLWKWQSNKQ----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~ 516 (701)
++.||.+++||...... +.|..++. ..+++|+.. ++++.. + .+|...|.+++|+ |
T Consensus 321 ~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~-~-~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT-L-TGHSSSVRGVAFSPDG 397 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEE-E-ECCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEE-e-cCCCCCeEEEEECCCC
Confidence 99999999999865543 22332221 137899954 444432 2 4788999999999 8
Q ss_pred CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE
Q 005342 517 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 594 (701)
Q Consensus 517 ~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~ 594 (701)
++|++++ |+.|++||. +++.+..+.+|...|++++|+|++ ++++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 398 ~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~ 475 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 475 (577)
T ss_dssp SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEE
Confidence 8999999 999999996 678888999999999999999999 9999999999999995 67788899999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342 595 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 595 spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~ 673 (701)
+|++++|++++.|++|++||.. ++. ...+. +|. ..|++++|+|||++|+++ .|+.|++||. +++++++
T Consensus 476 spd~~~las~~~d~~i~iw~~~-~~~--~~~~~----~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRN-GQL--LQTLT----GHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETT-SCE--EEEEE----CCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred cCCCCEEEEEeCCCEEEEEcCC-CCE--EEEEe----CCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 9999999999999999999964 432 22333 665 899999999999999996 7999999996 7899999
Q ss_pred eee----eeEEEEEeeEE
Q 005342 674 VLL----ISHIMFVQIVV 687 (701)
Q Consensus 674 l~~----i~~~~fs~~~~ 687 (701)
+.+ |++++|+|+..
T Consensus 545 ~~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp EECCSSCEEEEEECTTSS
T ss_pred EcCCCCCEEEEEEcCCCC
Confidence 887 99999998753
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.9e-37 Score=323.36 Aligned_cols=280 Identities=15% Similarity=0.202 Sum_probs=237.7
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+....+.+|.+.|. +++|+|+ +.|++|++||..++.....+ .
T Consensus 55 ~~~~~l~gH~~~V~--~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------------------~ 103 (354)
T 2pbi_B 55 KTRRTLKGHGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----------------------------T 103 (354)
T ss_dssp CEEEEEECCSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------E
T ss_pred EEEEEecCCCCeEE--EEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----------------------------e
Confidence 56788999999999 9999999 89999999999888766552 2
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.|.. |.+++|+|+|.++++|+.|+.+++|++....... ....+ ..|...|.+++|+|++..|++++.||+|+
T Consensus 104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV----AMHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE----EECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee----eccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 4555 8899999999999999999999999986321111 11121 24889999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
+||+ .+++++.. + .+|...|.+++++ |+++++|+ ||.|++||+++++.+..+
T Consensus 180 lwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 180 LWDV---------------------ESGQLLQS-F-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp EEET---------------------TTCCEEEE-E-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEeC---------------------CCCeEEEE-E-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9965 55554432 2 4788999999986 57999999 999999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
.+|...|++++|+|++ .+++|+.|++|++||+++++.+..+..+ ...+.+++|+|+|++|++|+.|++|++||+.++
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 9999999999999999 9999999999999999998877776643 347899999999999999999999999999987
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEE
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd 664 (701)
+.. ..+ .+|. ..|++++|+|||++|++| .|++|+||+
T Consensus 317 ~~~--~~l----~~h~---~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SRV--SIL----FGHE---NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEE--EEE----CCCS---SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceE--EEE----ECCC---CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 533 222 2665 899999999999999996 799999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.8e-37 Score=321.93 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=227.5
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |++++|+||+++|++|+.||+|++||+. ++.... ....|...|.+++|+|+|+++++|+.|+.+++
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~----~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY----TTNKVH---AIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TCCEEE---EEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC----CCCcce---EeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 678888 9999999999999999999999999987 444333 12247889999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
|++.+.. ....... .+ .+|...|.++.|+ +..+++++ |+.|++||+++++.+..+.+|.
T Consensus 124 w~~~~~~-----------------~~~~~~~-~~-~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 124 YNLKTRE-----------------GNVRVSR-EL-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp EETTTCS-----------------BSCEEEE-EE-ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EECccCC-----------------CcceeEE-Ee-cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 9874321 0011111 12 4788999999999 77788888 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
..|.+++|+|++ ++++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++|+.|++|++||+++++...
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-- 262 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-- 262 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE--
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999875332
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
.+. . ..+. ..|++++|+|+|++|++| .|+.|++||+.+++.+..+.+ |++++|+|+..
T Consensus 263 ~~~-~-~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 263 TYS-H-DNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp EEC-C-TTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEc-c-CCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC
Confidence 111 1 1222 579999999999999997 799999999999999999887 99999998743
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-37 Score=320.12 Aligned_cols=295 Identities=12% Similarity=0.105 Sum_probs=226.4
Q ss_pred CccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCcc--ccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 315 DKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSN--LRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 315 ~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
.+.+++..+.+|.+.|+ +++|+|+ +.|++|++||+.++.. ... +.
T Consensus 2 ~~~~~~~~~~~h~~~v~--~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~----------~~---------------- 53 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIW--SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDV----------LD---------------- 53 (330)
T ss_dssp -CCEEEEEEECCSSCEE--EEEEETTEEEEEESSSCEEEEECSSSCCEEEEE----------EC----------------
T ss_pred cccccceeeccCCCcee--eeccCCCEEEEEcCCCEEEEEEecCCCeEEEEE----------Ee----------------
Confidence 35577889999999999 9999999 8999999999987532 221 10
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC---CCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE---PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~---~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
..+|.. |.+++|+|++++|++|+.|++|++|++..... ...+.. ...+|...|.+++|+|+|++|++|+.|+
T Consensus 54 -~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 54 -ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA---IIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp -TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE---EEC----CEEEEEECTTSCEEEEEETTS
T ss_pred -cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE---EEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 114777 99999999999999999999999999853211 111222 2346899999999999999999999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC--cEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTL 538 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~--~~~ 538 (701)
.|++||+.... ...+++.. + .+|...|.+++|+ +.+|++++ |+.|++||..++ +++
T Consensus 130 ~v~iwd~~~~~-----------------~~~~~~~~-~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 130 SVWIWETDESG-----------------EEYECISV-L-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190 (330)
T ss_dssp CEEEEECCTTC-----------------CCCEEEEE-E-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred EEEEEeccCCC-----------------CCeEEEEE-e-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE
Confidence 99999873210 11223221 2 4789999999999 88999999 999999998766 678
Q ss_pred EEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCC--------ceEEeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342 539 ATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK--------KTKAKLKG-HQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spd--g-~l~~gs~dg~I~iwd~~~~--------~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~ 606 (701)
..+.+|...|.+++|+|+ + .+++|+.|++|++||+.++ .....+.+ |...|.+++|+|++ +|++++.
T Consensus 191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~ 269 (330)
T 2hes_X 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA 269 (330)
T ss_dssp EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC
Confidence 889999999999999999 6 8999999999999998765 34555665 89999999999765 7999999
Q ss_pred CCeEEEEECCCCeeeeeeeeeeccCCCCCCCC-CeEEEEEcC--CCCEEEEE-ecCeEEEEECCC
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHP--DQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~-~v~~v~~sp--dg~~l~sg-~Dg~I~iwd~~~ 667 (701)
||+|++||..+++.. .+.....+|. . .|++++|+| ++++|++| .||+|+|||+++
T Consensus 270 dg~v~iw~~~~~~~~---~~~~~~~~h~---~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 270 DGVLAVYEEVDGEWK---VFAKRALCHG---VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEETTEEE---EEEEESCTTT---TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCEEEEEEcCCCceE---EEeccccccc---cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999999887421 1111223554 4 899999999 68899985 899999999864
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-37 Score=326.42 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=221.2
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CC------CCeEEEEeccCCccccccccccCCCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------AN------NETISLKDFPTVSNLRYASSILTDKPNQEGR 373 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~------d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~ 373 (701)
.+...|++++.. ..+|...|. +++|||| +. |+++++|+..++.....+
T Consensus 26 ~~~~~w~~p~~~----p~~H~~~V~--~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~------------- 86 (357)
T 4g56_B 26 SKGSAWGRPVTA----PACMEVQIG--AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL------------- 86 (357)
T ss_dssp ------------------CCCSEEE--EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-------------
T ss_pred ccccccCCCCCC----cccccCCEE--EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-------------
Confidence 456778776543 357999999 9999999 33 788999998877654441
Q ss_pred CcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEec
Q 005342 374 PLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSH 451 (701)
Q Consensus 374 ~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~sp 451 (701)
.....+|.. |.+++|+|++.+ ++++.||+|++||+. .++... ......+|...|.+++|+|
T Consensus 87 ------------~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~----~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 87 ------------CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEIL----EKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp ------------CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECS
T ss_pred ------------ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeecc----ccceeEEEeeccCCCCCCEEEEEECC
Confidence 111246777 999999999865 567788999999997 333221 1122346889999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeE
Q 005342 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKI 527 (701)
Q Consensus 452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I 527 (701)
+|++|++|+.||.|++||+ .+++.+.. + .+|...|.+++|+ + .++++++ ||.|
T Consensus 150 dg~~l~sgs~dg~v~iwd~---------------------~~~~~~~~-~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDL---------------------SQKAVLKS-Y-NAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp SSSEEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-E-cCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 9999999999999999955 55665543 3 4789999999998 4 4788888 9999
Q ss_pred EEEeCCCCcEEEEec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC-CEEE
Q 005342 528 SIFSLETFQTLATFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLV 602 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg-~~l~ 602 (701)
++||+++++....+. .+...+++++|+|++ ++++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++||
T Consensus 207 ~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEE
T ss_pred EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEE
Confidence 999999988766553 456779999999986 89999999999999999999999999999999999999987 5899
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEE-ecCeEEEEECCCC
Q 005342 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg-~Dg~I~iwd~~~g 668 (701)
+|+.|++|+|||+++++.. . .. +|. ..|++++|+| |+++|+++ .||+|++|++.+.
T Consensus 287 sgs~D~~i~iwd~~~~~~~-----~-~~-~H~---~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEVF-----R-DL-SHR---DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEECTTSCEEE-----E-EC-CCS---SCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCEEEEEECCCCcEe-----E-EC-CCC---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999997532 2 22 555 8999999999 79999985 8999999999653
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.2e-36 Score=313.70 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=238.1
Q ss_pred CccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342 315 DKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS 386 (701)
Q Consensus 315 ~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~ 386 (701)
++.++..+|++|.+.|+ +++|+|+ +.|++|+|||+.+++..... ..
T Consensus 26 ~~~~l~~tL~GH~~~V~--~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------------------~~ 79 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVT--QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------------------PQ 79 (340)
T ss_dssp CEEEEEEEECCCSSCEE--EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------------------EE
T ss_pred CceEEEEEECCccCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------------------ee
Confidence 34456778999999999 9999997 78999999999876543321 12
Q ss_pred ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
..+.+|.. |.+++|+|+|++|++|+.|+.|++|+.. ........ ..+...+....+++++.++++++.|+.+
T Consensus 80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT----TGTTTRRF---VGHTKDVLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec----ccceeeee---cCCCCceeEEEEeecCccceeecCCCeE
Confidence 23678888 9999999999999999999999999997 44333311 2366788999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
++||. ........ ...+|...+.+++++ +.++++++ |+.|++||+++++.+..
T Consensus 153 ~~~d~---------------------~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 153 KLWNT---------------------LGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEECT---------------------TSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEe---------------------CCCceEEE-EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 99965 22222211 224788899999998 45678888 99999999999999999
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
+.+|...|++++|+|++ ++++|+.||.|++||+++++.+..+.++ ..|.+++|+|++.++ +++.|+.|++||++++.
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 99999999999999999 9999999999999999999999988855 679999999988755 56678999999999875
Q ss_pred eeeeeeee---eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 620 KLCSKFLH---SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 620 ~~~~~~l~---~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
......-. ....+|. ..|++++|+|||++|++| .||.|+|||+.+|+
T Consensus 289 ~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 289 IVDELKQEVISTSSKAEP---PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECCC-------CCC---CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEeccccceeeeccCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 43221111 0112444 889999999999999996 79999999999986
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-36 Score=316.52 Aligned_cols=294 Identities=13% Similarity=0.165 Sum_probs=230.3
Q ss_pred ceeEEEeecCcceeeeEEEE-----cc-C-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342 318 RLLSLIKQIMDWWVPYCINV-----MP-N-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN 384 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~f-----sp-d-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~ 384 (701)
++...+.+|.+.|. +++| +| + +.|++|++||+.++...... +.
T Consensus 12 ~~~~~l~gH~~~V~--~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------~~----------- 67 (343)
T 2xzm_R 12 VKRGILEGHSDWVT--SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-----------GI----------- 67 (343)
T ss_dssp EEEEEEECCSSCEE--EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------EE-----------
T ss_pred eeeeeeccchhhhh--heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------cc-----------
Confidence 56678999999999 9999 66 5 88999999999765432210 00
Q ss_pred CCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342 385 DSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 385 ~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
....+.+|.. |.+++|+|++.++++|+.|++|++||+. ++++.. .+.+|...|.+++|+|++++|++++.|+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~----~~~~~~---~~~~h~~~v~~v~~sp~~~~l~s~~~d~ 140 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR----TGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGAER 140 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT----SSCEEE---EEECCCSCEEEEEECSSTTEEEEEETTS
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEE---EEcCCCCcEEEEEECCCCCEEEEEcCCC
Confidence 1122568888 9999999999999999999999999998 555443 2346899999999999999999999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C----------CEEEEEe-CCeEEEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G----------SHLFSAS-GGKISIF 530 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~----------~~l~s~s-dg~I~iw 530 (701)
.|++||+.. ..........+|...|.+++|+ + .++++++ ||.|++|
T Consensus 141 ~i~~wd~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 141 EIKLWNILG---------------------ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp CEEEEESSS---------------------CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred EEEEEeccC---------------------CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 999997632 1111111113678899999998 3 6899999 9999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
|. +++....+.+|...|.+++|+|+| +|++|+.||.|++||+.+ ......+. +...|++++|+|++++++++ .|+
T Consensus 200 d~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~ 276 (343)
T 2xzm_R 200 NT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ 276 (343)
T ss_dssp ET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred cC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence 94 567778888999999999999999 999999999999999954 44444443 55679999999999988755 577
Q ss_pred eEEEEECCCCeeeeeeeeeec-------cCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 609 QLCVWDAVGWKKLCSKFLHSF-------QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~~l~~~-------~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
.|++||+.+++......+... ..+|. ..|++++|+|+|++|++| .||+|++|++.+|+
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN---PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC---CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CEEEEEeCCCCCCceEEeecCcchhhhhhcCCC---CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 899999988653321122100 01344 789999999999999996 79999999987654
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.2e-36 Score=311.81 Aligned_cols=262 Identities=17% Similarity=0.167 Sum_probs=226.4
Q ss_pred ccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342 389 FNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 389 l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
+.+|.. |++++|+|+ +.+|++|+.|++|++|++. .+.... .....+|...|.+++|+|++..+++++.|+
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~----~~~~~~-~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR----DERLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE----TTEEEE-EEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC----CCCeee-eeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 458999 999999985 6799999999999999997 343221 223457999999999999999999999999
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
.|++||+ .+++.+.. + ..+...+.+++|+ ++++++++ ||.|++||+++++....
T Consensus 103 ~i~lWd~---------------------~~~~~~~~-~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 103 HIRLWDL---------------------ENGKQIKS-I-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEEEET---------------------TTTEEEEE-E-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred cEEEEEC---------------------CCCCEEEE-E-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 9999965 55554432 2 3567788899999 89999999 99999999999999999
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
+..+...+.+++|+|+| ++++|+.||.|++||+++++.+..+.+|..+|++++|+|++++|++|+.|++|++||+++++
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 99899999999999999 99999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
.. ..+. +|. ..|.+++|+|++++|+++ .|++|++||+.++++++++.+ |.+++|+|...
T Consensus 240 ~~--~~~~----~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 240 LA--GTLS----GHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp EE--EEEC----CCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred ee--EEEc----CCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 32 2222 665 889999999999999996 799999999999999999876 99999998643
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.5e-36 Score=309.21 Aligned_cols=259 Identities=13% Similarity=0.171 Sum_probs=221.7
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
.+.+|.. |.+++|+|+|++|++|+.||.|++||+. ++.... ....|...|.+++|+|++++|++|+.|+.|+
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~----~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE----TQVEVR---SIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC----CCceeE---EeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 3678888 9999999999999999999999999997 554333 2234788999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCC-cEEEEec
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFA 542 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~-~~~~~~~ 542 (701)
+||+ .+++.+.. + .+|...|.+++|+ +.++++|+ |+.|++||++++ .....+.
T Consensus 81 vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 81 VFNY---------------------NTGEKVVD-F-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEET---------------------TTCCEEEE-E-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEC---------------------CCCcEEEE-E-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 9965 45554432 2 4799999999999 88999999 999999999887 4567788
Q ss_pred CCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCC
Q 005342 543 NPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 543 ~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~~ 617 (701)
+|...|.+++|+| ++ .+++|+.|++|++||++++.....+. +|...+..++|+| ++++|++|+.|++|++||+++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 9999999999999 56 99999999999999998877665554 4667899999987 778999999999999999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~ 685 (701)
++.. ..+. +|. ..|.+++|+|++++|++| .||+|++||+.++++++++.. +.+++|+|.
T Consensus 218 ~~~~--~~~~----~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 218 KSCV--ATLE----GHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp TEEE--EEEE----CCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred Cccc--eeeC----CCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 7532 3333 665 899999999999999996 799999999999999999986 888888765
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=314.96 Aligned_cols=268 Identities=13% Similarity=0.118 Sum_probs=225.2
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |++++|+|++++|++|+.|++|++||.. ++.... ....|...|.+++|+|+|.++++|+.|+.+++
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~----~~~~~~---~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF----TTNKEH---AVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEE---EEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC----CCCcce---EEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 578988 9999999999999999999999999987 443332 11236788999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
|++..... ......... + ..|...|.+++|+ +..+++++ |++|++||+++++.+..+.+|
T Consensus 133 ~~~~~~~~---------------~~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 133 YPLTFDKN---------------ENMAAKKKS-V-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp EECCCCTT---------------CCSGGGCEE-E-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEecccc---------------cccccccee-e-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 98743211 000000000 1 3588999999999 77899999 999999999999999999999
Q ss_pred CCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 545 PPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 545 ~~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
...|.+++++| +| .+++|+.||.|++||+++++.+..+.+|...|++++|+|++++|++|+.|++|++||+++++..
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999988 46 9999999999999999999999999999999999999999999999999999999999987532
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
. .+. . ..+. ..+.+++|+|+|++|++| .|++|++||+.+++.+..+.+ |++++|+|+..
T Consensus 276 ~--~~~-~-~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 276 A--IYS-K-ESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp E--EEC-C-TTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred E--EEc-C-CCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCC
Confidence 2 111 1 1122 578999999999999997 799999999999999998877 99999998753
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-35 Score=313.92 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=230.5
Q ss_pred ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC-CCccccCCCc-eE
Q 005342 325 QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN-DSSCFNDNNQ-SR 396 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~-~~~~l~~h~~-V~ 396 (701)
+|.+.|. +++|||| +.++++++|++.++..+.. +.++...... ... .......+.. |.
T Consensus 62 ~h~~~V~--~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~----------l~~~~~~~~~--~~~~~~~~~~~~~~~v~ 127 (393)
T 1erj_A 62 DHTSVVC--CVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR----------LSDDSAANKD--PENLNTSSSPSSDLYIR 127 (393)
T ss_dssp ECSSCCC--EEEECTTSSEEEEECBSCEEEEETTTCCEEEE----------ECC-------------------CCCCBEE
T ss_pred CCCCEEE--EEEECCCCCEEEEEcCCcEEEEEecCCCEEEE----------ecCccccccc--cccccccccCCCceeEE
Confidence 6999999 9999999 6689999999999988776 3332110000 000 0001123444 99
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
+++|+|+|++|++|+.|+.|++||+. .+++.. ...+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~------ 194 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIE----NRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL------ 194 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECC----CCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC------
Confidence 99999999999999999999999997 554443 33468999999999999999999999999999965
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe-------cCCC
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-------ANPP 545 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~-------~~~~ 545 (701)
.+++.... + .+...+.+++++ +.++++|+ ||.|++||++++..+..+ .+|.
T Consensus 195 ---------------~~~~~~~~-~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 195 ---------------RTGQCSLT-L--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp ---------------TTTEEEEE-E--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred ---------------CCCeeEEE-E--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence 44553322 2 245679999998 78999999 999999999999887776 5788
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
..|.+++|+|+| ++++|+.|+.|++||+++. .....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 899999999999 9999999999999999753 345677899999999999999999999999999999
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC------CCCEEEEE-ecCeEEEEECCCC
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp------dg~~l~sg-~Dg~I~iwd~~~g 668 (701)
||+.+++.. ..+. +|. ..|.+++|+| ++++|++| .||+|+||++.+.
T Consensus 337 wd~~~~~~~--~~l~----~h~---~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 337 WDKKSGNPL--LMLQ----GHR---NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTTCCEE--EEEE----CCS---SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EECCCCeEE--EEEC----CCC---CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999998633 2233 665 8999999986 68889986 7999999998643
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-34 Score=300.06 Aligned_cols=280 Identities=15% Similarity=0.213 Sum_probs=235.5
Q ss_pred cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
..+...+.+|.+.|. +++|+|+ +.|++|++|++.+++.... +
T Consensus 13 ~~~~~~~~gh~~~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------------------------~ 61 (312)
T 4ery_A 13 YALKFTLAGHTKAVS--SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----------------------------I 61 (312)
T ss_dssp CEEEEEECCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------E
T ss_pred ceeEEEEcccCCcEE--EEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-----------------------------h
Confidence 456678899999999 9999999 7899999999988876655 2
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.+|.. |.+++|+|++++|++|+.|+.|++||+. .+++.. ...+|...|.+++|+|+++++++|+.||.|++|
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~----~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS----SGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC----CCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 36677 9999999999999999999999999998 555443 223588999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-CC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-~~ 544 (701)
|+ .+++.+.. + ..|..+|.+++|+ ++++++++ ||.|++||+++++.+..+. .+
T Consensus 135 d~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 191 (312)
T 4ery_A 135 DV---------------------KTGKCLKT-L-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191 (312)
T ss_dssp ET---------------------TTCCEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EC---------------------CCCEEEEE-e-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence 65 44444332 2 4688899999999 88999999 9999999999998877764 45
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEE--EEEe-cCCCEEEEEeCCCeEEEEECCCCee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC--LAYS-LSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~--v~~s-pdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
...+..++|+|++ ++++++.||.|++||+++++.+..+.+|...+.+ ..++ +++.+|++|+.||.|++||+.+++.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 6789999999999 9999999999999999999999999988765433 3444 5788999999999999999999753
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE---ecCeEEEEECC
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAP 666 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg---~Dg~I~iwd~~ 666 (701)
. ..+. +|. ..|.+++|+|++++++++ .|++|++|+..
T Consensus 272 ~--~~~~----~h~---~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 V--QKLQ----GHT---DVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp E--EEEC----CCS---SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred h--hhhh----ccC---CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 2222 565 899999999999999985 49999999864
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=310.00 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=199.9
Q ss_pred eecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342 324 KQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR 396 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~ 396 (701)
..|...|. +++|+|+ +.||+|+|||+.+++++... ...+.+|.. |+
T Consensus 79 ~~~~~~v~--~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~-------------------------~~~~~~H~~~V~ 131 (344)
T 4gqb_B 79 VQTEAGVA--DLTWVGERGILVASDSGAVELWELDENETLIVS-------------------------KFCKYEHDDIVS 131 (344)
T ss_dssp EEESSCEE--EEEEETTTEEEEEETTSEEEEEEECTTSSCEEE-------------------------EEEEECCSSCEE
T ss_pred eccCCCEE--EEEEeCCCeEEEEECCCEEEEEeccCCCceeEe-------------------------eccccCCCCCEE
Confidence 44566788 9999999 89999999999999877651 223568998 99
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+++|+|+|++|++|+.|++|++||+. ++++.. .+.+|...|.+++|+|++. .+++|+.||.|++||+
T Consensus 132 ~v~~spdg~~l~sgs~d~~i~iwd~~----~~~~~~---~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~----- 199 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLS---SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT----- 199 (344)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET-----
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEcCcCCceEEEEecCCCCCceeeeccccccccccc-----
Confidence 99999999999999999999999998 665554 4457999999999999985 6789999999999976
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.+++.........+...+.+++|+ +.++++|+ ||.|++||+++++.+.++.+|...|+++
T Consensus 200 ----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 200 ----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp ----------------TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ----------------cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 333332221113456678999998 56888888 9999999999999999999999999999
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC
Q 005342 552 ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 552 ~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd~~~g 618 (701)
+|+|++ +|++|+.|++|++||+.++++. .+.+|.+.|++++|+|+++ +|+|||.|++|++|++.+.
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999998 7999999999999999988765 5789999999999999886 6789999999999999874
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-35 Score=316.32 Aligned_cols=274 Identities=12% Similarity=0.092 Sum_probs=222.3
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
|.+|.. |++++|+|+|++|++|+.|++|++||+. +++... ....|...|.+++|+|+|+++++|+.|+.+++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~----~~~~~~---~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL----TSQKTH---AIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT----TTEEEE---EEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCccce---EEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 568888 9999999999999999999999999997 554333 22358889999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEe--
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-- 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~-- 541 (701)
||+....... ....... ...+|...|.++.|+ +..+++|+ |++|++||+.+++.+..+
T Consensus 135 w~~~~~~~~~---------------~~~~~~~-~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 135 FNLSSQADRD---------------GNMPVSR-VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp EECCCCSSCC---------------CSSTTCC-BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred EECCCCcccc---------------CCcccee-eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 9985432111 0000111 124788999999998 55799999 999999999999988877
Q ss_pred ---cCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 542 ---ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 542 ---~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
.+|...|.+++++| ++ ++++|+.|++|++||++ .++.+..+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence 57888999999987 66 99999999999999998 45788899999999999999999999999999999999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee----e----eeEEEEEeeE
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL----L----ISHIMFVQIV 686 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~----~----i~~~~fs~~~ 686 (701)
++++........ ......+...|++++|+|+|+++++| .||.|++||+.+++.+..+. + |++++|+|+.
T Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 279 RTGHQLQVYNRE--PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTTEEEEEECCC--CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCCcEEEEeccc--ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 998644321111 00000011458999999999999997 79999999999999887762 2 9999999875
Q ss_pred E
Q 005342 687 V 687 (701)
Q Consensus 687 ~ 687 (701)
.
T Consensus 357 ~ 357 (380)
T 3iz6_a 357 S 357 (380)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.5e-34 Score=297.30 Aligned_cols=264 Identities=14% Similarity=0.182 Sum_probs=222.6
Q ss_pred ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
|.+|.. |++++|+|++ ++|++|+.|++|++|++...... +.... .+.+|...|.+++|+|+|+++++|+.|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR---SFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE---EEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce---EEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 678999 9999999965 89999999999999998632110 11111 234689999999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
++||+ .+++.+.. + .+|...|.+++|+ +.++++++ |+.|++||++ +..+..+.
T Consensus 90 ~~wd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~ 145 (319)
T 3frx_A 90 RLWDV---------------------ATGETYQR-F-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL 145 (319)
T ss_dssp EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred EEEEC---------------------CCCCeeEE-E-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence 99965 55555433 2 4799999999999 88999999 9999999995 56778888
Q ss_pred CCCCCeEEEEEcC------CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 543 NPPPIATYFILLP------QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 543 ~~~~~i~~l~~sp------dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
+|...+.+++++| ++ .+++|+.|+.|++||+++++....+.+|...|++++|+|+|++|++|+.|++|++||+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999998 45 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee------------eeEEEEE
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL------------ISHIMFV 683 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~------------i~~~~fs 683 (701)
.+++... .+. ++ ..|.+++|+|++.+++++.++.+++|++..+..+..+.. +.+++||
T Consensus 226 ~~~~~~~--~~~----~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 295 (319)
T 3frx_A 226 AAKKAMY--TLS----AQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295 (319)
T ss_dssp TTTEEEE--EEE----CC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred CCCcEEE--Eec----CC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence 9975332 222 33 789999999999999999888899999988877766532 7899999
Q ss_pred eeEEee
Q 005342 684 QIVVKF 689 (701)
Q Consensus 684 ~~~~~f 689 (701)
|+...+
T Consensus 296 pdg~~l 301 (319)
T 3frx_A 296 ADGQTL 301 (319)
T ss_dssp TTSSEE
T ss_pred CCCCEE
Confidence 875433
No 28
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-33 Score=308.94 Aligned_cols=315 Identities=14% Similarity=0.138 Sum_probs=254.3
Q ss_pred ceeEEEeecCcce-eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342 318 RLLSLIKQIMDWW-VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (701)
Q Consensus 318 ~~~~~l~~h~~~v-~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~ 391 (701)
.....+.+|.+.+ . ++.|+++ +.|++|++||+.+++.+..+ .+
T Consensus 112 ~~~~~l~~h~~~v~~--~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-----------------------------~~ 160 (464)
T 3v7d_B 112 PQRTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQL-----------------------------SG 160 (464)
T ss_dssp CEEEEEECCSSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE-----------------------------CC
T ss_pred cceEEEcCCCCCcEE--EEEECCCEEEEEcCCCcEEEEECCCCcEEEEE-----------------------------eC
Confidence 4567889998875 5 8888887 89999999999998877662 46
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe--cCCCEEEEEECCCcEEEE
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLW 468 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i~vw 468 (701)
|.. |++++|+|++ .+++|+.||+|++||+. ++++.. ...+|...|.+++|+ +++.++++|+.||.+++|
T Consensus 161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK----KGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp CSSCEEEEEECSTT-EEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC----CCcEEE---EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 777 9999999998 99999999999999998 565444 334689999999999 577899999999999999
Q ss_pred ecCCCCcccccc-ccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 469 KWQSNKQSLEEE-NVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 469 d~~~~~~~~g~~-~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
|+.+........ ........+.+.... +.. ...+|...+.++..+++++++++ ||.|++||+.+++.+..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEE--EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEE--EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 997654311000 000011111111111 222 22478889998876699999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
..|.+++|+|++ .+++|+.||.|++||+++++.+..+.+|...|.+++|+ ++++++++.||+|++||+.++....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-- 386 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-- 386 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee--
Confidence 999999999999 99999999999999999999999999999999999997 5899999999999999999875321
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee-e----eeEEEEEee
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL-L----ISHIMFVQI 685 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~-~----i~~~~fs~~ 685 (701)
. . ++. ..+..++|+|+++++++|.||.|++||+.+|+.++... + |.+++|++.
T Consensus 387 --~-~--~~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 387 --S-Y--HHT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp --E-E--ECT---TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred --e-e--cCC---CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence 1 1 222 66788999999999999889999999999999988632 2 889998643
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=300.91 Aligned_cols=270 Identities=13% Similarity=0.130 Sum_probs=215.8
Q ss_pred ccCCCc--eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ--SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~--V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
+.+|.. |++++|+|+|++||+|+.|++|++|++. .+..........+|...|.+++|+|+|++|++|+.|+.++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~----~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE----GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE----TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC----CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 456664 9999999999999999999999999997 4432221112346899999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLAT 540 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~ 540 (701)
+|+... ....++.. + .+|...|.+++|+ +++|++++ |+.|++||+.++. .+..
T Consensus 87 iw~~~~-------------------~~~~~~~~-~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 87 IWKKNQ-------------------DDFECVTT-L-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp EEEECC-------------------C-EEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred EEEccC-------------------CCeEEEEE-c-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 997622 11122221 3 4799999999999 89999999 9999999998763 4667
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+.+|...|.+++|+|++ ++++|+.|+.|++||.++++ ....+.+|...|++++|+|+|++|++|+.|++|++||...
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 88899999999999999 99999999999999998775 4578899999999999999999999999999999999743
Q ss_pred Ceee----------eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce--------e-eeeee-
Q 005342 618 WKKL----------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--------T-SQVLL- 676 (701)
Q Consensus 618 g~~~----------~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~--------~-~~l~~- 676 (701)
.... ....+..+...|. ..|++++|+|++..|+++ .|+.|++|+...+.. . ....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred CCCCccceeeccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 2100 0122333444465 899999999999999985 899999999876531 1 11122
Q ss_pred ---eeEEEEEeeE
Q 005342 677 ---ISHIMFVQIV 686 (701)
Q Consensus 677 ---i~~~~fs~~~ 686 (701)
|++++|+|..
T Consensus 303 ~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 303 SQDVNCVAWNPKE 315 (345)
T ss_dssp SSCEEEEEECSSS
T ss_pred cCcEeEeEEeCCC
Confidence 9999999863
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-34 Score=307.11 Aligned_cols=331 Identities=11% Similarity=0.048 Sum_probs=244.8
Q ss_pred cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEec----cCCcc------ccccccccCCCCC
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDF----PTVSN------LRYASSILTDKPN 369 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~----~~~~~------~~~~~~~~~~~~~ 369 (701)
.+.+|++...........|.+.|. +++|+|+ +.|+.|++||+ .++.. ...+ ...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------~~~ 97 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIV--SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL------RHP 97 (425)
T ss_dssp --------CCCEECEEEEECSCCS--EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE------ECC
T ss_pred ccccccchhhhhheeeeeccCceE--EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc------ccc
Confidence 346777766665555566778999 9999998 67899999999 88873 2221 000
Q ss_pred CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEE
Q 005342 370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI 448 (701)
Q Consensus 370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~ 448 (701)
+.++ ....+|.. |.+++|+|++++|++|+.||.|++|+. .+.... ....|...|.+++
T Consensus 98 ~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-----~~~~~~---~~~~~~~~v~~~~ 156 (425)
T 1r5m_A 98 FALS-------------ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-----TGALLN---VLNFHRAPIVSVK 156 (425)
T ss_dssp CCCC-------------------CBCEEEEEECTTSSEEEEEETTSCEEEEET-----TSCEEE---EECCCCSCEEEEE
T ss_pred cccc-------------ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-----CCCeee---eccCCCccEEEEE
Confidence 1111 01235777 999999999999999999999999994 333333 2235889999999
Q ss_pred EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec-CCEEEEEe-C
Q 005342 449 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-GSHLFSAS-G 524 (701)
Q Consensus 449 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-d 524 (701)
|+|++++|++++.||.+++||+.++.. . ..+...... .............+.+++|+ +..+++++ +
T Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (425)
T 1r5m_A 157 WNKDGTHIISMDVENVTILWNVISGTV-----M-----QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226 (425)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTTEE-----E-----EEECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred ECCCCCEEEEEecCCeEEEEECCCCcE-----E-----EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Confidence 999999999999999999997744321 0 000000000 00000000112238889999 77888888 9
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
|.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999 9999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc-------------
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------------- 669 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~------------- 669 (701)
++.|+.|++||+.+++... .+. .|. ..|.+++|+|++++|+++ .||.|++||+.+++
T Consensus 306 ~~~d~~i~i~d~~~~~~~~--~~~----~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLA--LSI----VDG---VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp EETTSEEEEEETTTTEEEE--EEE----CTT---CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred EeCCCcEEEEECCCCcEeE--ecc----cCC---ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 9999999999999975332 222 444 889999999999999996 79999999999888
Q ss_pred -------eeeeeee------eeEEEEEeeEE
Q 005342 670 -------HTSQVLL------ISHIMFVQIVV 687 (701)
Q Consensus 670 -------~~~~l~~------i~~~~fs~~~~ 687 (701)
.+..+.+ |++++|+|+..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 7777764 78889987643
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.8e-33 Score=290.93 Aligned_cols=293 Identities=14% Similarity=0.150 Sum_probs=238.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
+.+..|+...........+|.+.|. +++|+|+ +.|+.|++||+.++.....+ ..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~----------~~-------- 90 (337)
T 1gxr_A 31 DALIGPGIPRHARQINTLNHGEVVC--AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV----------SQ-------- 90 (337)
T ss_dssp TSSSSTTCCSEEEEEEEECCSSCCC--EEEECSSSSEEEEECBSEEEEEETTSTTCCSCS----------EE--------
T ss_pred CcEeccccCCccccceeccCCCceE--EEEEecCCcEEEEcCCCeEEEEECCCCCceeee----------ec--------
Confidence 3455666555555555558999999 9999999 44999999999887654431 00
Q ss_pred CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~ 459 (701)
....+|.. |.+++|+|++++|++++.|+.|++|++. .++..... ....|...|.+++|+|++++++++
T Consensus 91 ------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 91 ------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA----APTPRIKA-ELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp ------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC----CC--EEEE-EEECSSSCEEEEEECTTSSEEEEE
T ss_pred ------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC----CCCcceee-ecccCCCceEEEEECCCCCEEEEE
Confidence 00125777 9999999999999999999999999997 33311111 223478899999999999999999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 536 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~ 536 (701)
+.||.+++||+ .+++.... + ..|...|.+++|+ ++++++++ ||.|++||+++++
T Consensus 160 ~~dg~v~~~d~---------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 160 CSDGNIAVWDL---------------------HNQTLVRQ-F-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eCCCcEEEEeC---------------------CCCceeee-e-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 99999999965 45554432 2 4688899999999 88999999 9999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 537 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 537 ~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
.+..+. +...+.+++|+|++ .+++++.|+.|++||+++++.. .+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 888876 77889999999999 9999999999999999988764 56789999999999999999999999999999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
.+++... .. .|. ..+++++|+|++++|+++ .||.|++|++
T Consensus 295 ~~~~~~~--~~-----~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIF--QS-----KES---SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEE--EE-----ECS---SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEE--Ee-----cCC---CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9986432 11 233 889999999999999986 7999999996
No 32
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-35 Score=359.65 Aligned_cols=355 Identities=15% Similarity=0.146 Sum_probs=277.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc--
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL-- 375 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-- 375 (701)
+.|++||+.+++++..+.+|...|. +++|+|+ +.|++|++||+.++.+... +.+|..
T Consensus 679 ~~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------~~~h~~~v 746 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------MFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEE--EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------ECCCSSCE
T ss_pred CeEEEEECCCCceEEEEcCCCCcEE--EEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe----------ecCCCCCE
Confidence 8899999999999999999999999 9999995 7899999999999987766 333332
Q ss_pred -----------ccccC-CCC----C--C----------------------------------------------------
Q 005342 376 -----------DASSG-DDS----N--D---------------------------------------------------- 385 (701)
Q Consensus 376 -----------~~s~~-D~~----~--~---------------------------------------------------- 385 (701)
+++++ |++ + .
T Consensus 747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~ 826 (1249)
T 3sfz_A 747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI 826 (1249)
T ss_dssp EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEET
T ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEe
Confidence 22222 211 0 0
Q ss_pred --Ccc----ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 386 --SSC----FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 386 --~~~----l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
+.. ..+|.. |.+++|+|+++++++|+.|+.|++|++. ++.... ...+|...|.+++|+|+|+++++
T Consensus 827 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~----~~~~~~---~~~~h~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVA---DCRGHLSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC----CCceee---ecCCCccceEEEEECCCCCEEEE
Confidence 000 126777 9999999999999999999999999997 554433 23468889999999999999999
Q ss_pred EECCCcEEEEecCCCC----------------------------------------------------------------
Q 005342 459 LTQTATHKLWKWQSNK---------------------------------------------------------------- 474 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~---------------------------------------------------------------- 474 (701)
++.||.+++|++....
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 9999999999864210
Q ss_pred ---------------c-----------------cccccccc----eeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CC
Q 005342 475 ---------------Q-----------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 517 (701)
Q Consensus 475 ---------------~-----------------~~g~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~ 517 (701)
. +.|..... ..+++|+..++.... + ..|...|.+++++ +.
T Consensus 980 ~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~-~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--L-QAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC--C-BCCSSCEEEEEECSSS
T ss_pred cCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE--E-ecCCCcEEEEEEcCCC
Confidence 0 00000000 116667766666553 1 3567777777777 66
Q ss_pred EEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe
Q 005342 518 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 595 (701)
Q Consensus 518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s 595 (701)
.+++++ ||.|++||+.+++....+.+|...|++++|+|++ ++++|+.||+|++||+.+++.+..+.+|.+.|++++|+
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEEC
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEEC
Confidence 666776 7888888888888888888999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeee-eee--eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLH--SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~-~l~--~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~ 672 (701)
|+|++|++|+.||+|++||+.+++..... +.. ....+|. ..|++++|+|||+++++++ |.|++||+.+|+.+.
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceee
Confidence 99999999999999999999998644321 111 0112344 8899999999999998875 899999999999988
Q ss_pred eeee----eeEEEEEeeEE
Q 005342 673 QVLL----ISHIMFVQIVV 687 (701)
Q Consensus 673 ~l~~----i~~~~fs~~~~ 687 (701)
.+.+ |++++|+|+..
T Consensus 1213 ~~~~~~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A 1213 TFYTNGTNLKKIHVSPDFR 1231 (1249)
T ss_dssp CCCCSSCCCCCCEECSSSC
T ss_pred eeeccCCcccEEEECCCCC
Confidence 8875 89999998753
No 33
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-34 Score=351.17 Aligned_cols=331 Identities=14% Similarity=0.146 Sum_probs=280.1
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||..+++.+..+.+|.+.|. +++|+|+ +.|++|++||+.+++++..+
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~------------------- 695 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAHEDEVL--CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY------------------- 695 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred CeEEEEECCCCCEEEEeccCCCCEE--EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-------------------
Confidence 8999999999999999999999999 9999999 78999999999999877762
Q ss_pred CCCCCCCccccCCCc-eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
.+|.. |++++|+| ++.++++|+.|+.|++||+. ++.+.. ...+|...|.+++|+|+|+++
T Consensus 696 ----------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~----~~~~~~---~~~~h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 696 ----------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN----QKECRN---TMFGHTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp ----------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT----SSSEEE---EECCCSSCEEEEEECSSTTEE
T ss_pred ----------cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC----Ccchhh---eecCCCCCEEEEEEecCCCEE
Confidence 36677 99999999 56689999999999999998 565544 334689999999999999999
Q ss_pred EEEECCCcEEEEecCCCCc------------------------------ccccccc---ceeeEEeeCCCCeEEeecccC
Q 005342 457 VALTQTATHKLWKWQSNKQ------------------------------SLEEENV---NMESQLYQPSSKLVMTNDIAA 503 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~------------------------------~~g~~~~---~~~i~~~d~~~~~~~~~~~~~ 503 (701)
++++.||.|++||+.++.. +.|.... ...+.+|+..++..... +..
T Consensus 759 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~ 837 (1249)
T 3sfz_A 759 ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHT 837 (1249)
T ss_dssp EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EEC
T ss_pred EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcC
Confidence 9999999999999876532 1111111 11378999988886644 335
Q ss_pred CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----
Q 005342 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----- 574 (701)
Q Consensus 504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~----- 574 (701)
+|...|.+++|+ +.++++++ ||.|++||+.++..+..+.+|...|++++|+|+| .+++++.||.|++||+.
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 788999999999 88999998 9999999999999999999999999999999999 99999999888888743
Q ss_pred --------------------------------------------------------------------------CCceEE
Q 005342 575 --------------------------------------------------------------------------TKKTKA 580 (701)
Q Consensus 575 --------------------------------------------------------------------------~~~~~~ 580 (701)
+++...
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~ 997 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee
Confidence 233455
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeE
Q 005342 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 660 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I 660 (701)
.+.+|.+.|++++|+|+|+++++++.||.|++||+.+++... +. +|. ..|.++.|+|++.+++.+.|++|
T Consensus 998 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~------~~-~~~---~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF------LQ-AHQ---ETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC------CB-CCS---SCEEEEEECSSSEEEEEESSSEE
T ss_pred ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE------Ee-cCC---CcEEEEEEcCCCcEEEEECCCcE
Confidence 667899999999999999999999999999999999985331 22 444 89999999998877666799999
Q ss_pred EEEECCCCceeeeeee----eeEEEEEeeE
Q 005342 661 DVYEAPTLNHTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 661 ~iwd~~~g~~~~~l~~----i~~~~fs~~~ 686 (701)
++||+.+++.+..+.+ |++++|+|+.
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDA 1097 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSCCCCEEECSSS
T ss_pred EEEECCCCceeEEEcccCCcEEEEEECCCC
Confidence 9999999999988886 9999999874
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-33 Score=299.96 Aligned_cols=288 Identities=10% Similarity=0.077 Sum_probs=236.2
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
+..|.+.|. +++|+|+ +.|+.|++||+.+++ .... +.+|.
T Consensus 4 ~~~~~~~i~--~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-----------------------------~~~h~ 52 (372)
T 1k8k_C 4 HSFLVEPIS--CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----------------------------LKEHN 52 (372)
T ss_dssp EESCSSCCC--EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-----------------------------EECCS
T ss_pred ecccCCCeE--EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee-----------------------------ecCCC
Confidence 456888999 9999999 689999999998876 4443 24677
Q ss_pred c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
. |.+++|+|++++|++++.|+.|++||+. .++..... ....|...|.+++|+|+++++++++.||.+++||+..
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK----GRTWKPTL-VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEE----TTEEEEEE-ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECC----CCeeeeeE-EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 7 9999999999999999999999999997 55433211 2345788999999999999999999999999998733
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeC-----------------
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL----------------- 532 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~----------------- 532 (701)
.........+..+|...|.+++|+ ++++++++ ||.|++||+
T Consensus 128 -------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 188 (372)
T 1k8k_C 128 -------------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 188 (372)
T ss_dssp -------------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred -------------------CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccc
Confidence 222111111334688999999999 88999999 999999995
Q ss_pred -CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 533 -ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 533 -~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
.+++.+..+.+|...+.+++|+|++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|+++++++| .|+.|
T Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 189 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence 4678888998999999999999999 99999999999999999999999999999999999999999988877 89999
Q ss_pred EEEECCC--Ceeeeeeee---------------------------------eeccCCCCCCCCCeEEEEEc-CCC---CE
Q 005342 611 CVWDAVG--WKKLCSKFL---------------------------------HSFQTGLVPETTIVNHIQFH-PDQ---IH 651 (701)
Q Consensus 611 ~vwd~~~--g~~~~~~~l---------------------------------~~~~~~~~~~~~~v~~v~~s-pdg---~~ 651 (701)
++|++.+ +.......+ ..+..+|. ..|++++|+ ++| ++
T Consensus 268 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~g~~~~~ 344 (372)
T 1k8k_C 268 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK---NSVSQISVLSGGKAKCSQ 344 (372)
T ss_dssp EEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS---SCEEEEEEEESTTTSCSE
T ss_pred EEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccccc---CCcceeEEecCCCcceee
Confidence 9999988 531111000 11333565 899999976 666 89
Q ss_pred EEEE-ecCeEEEEECCCCc
Q 005342 652 LLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 652 l~sg-~Dg~I~iwd~~~g~ 669 (701)
|++| .||.|++||+.+++
T Consensus 345 l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 345 FCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEETTSEEEEEEHHHHH
T ss_pred EEEecCCCceEEEEecChh
Confidence 9996 79999999997754
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-33 Score=327.48 Aligned_cols=293 Identities=16% Similarity=0.176 Sum_probs=233.0
Q ss_pred ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
+....+++|.+.|. +++|+|+ +.|++|++||+.++...... ....+
T Consensus 373 ~~~~~l~~H~~~V~--~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~------------------------~~~~~ 426 (694)
T 3dm0_A 373 VLKGTMRAHTDMVT--AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV------------------------AQRRL 426 (694)
T ss_dssp EEEEEEECCSSCEE--EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE------------------------EEEEE
T ss_pred chhhhcccCCceeE--EEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc------------------------cccee
Confidence 34457899999999 9999986 89999999999765432110 11235
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.+|.. |.+++|+|+|++|++|+.|++|++||+. .+.+.. ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~----~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTR---RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC----CCccee---EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 68988 9999999999999999999999999997 554443 234689999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec--C--CEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s--~--~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
|... ...... ....+|...|.+++|+ + ..+++++ |+.|++||+++++....+.
T Consensus 500 d~~~---------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 500 NTLG---------------------ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp CTTS---------------------CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ECCC---------------------CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 7522 111110 0113688899999999 3 5789999 9999999999999999999
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 543 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
+|...|++++|+|+| ++++|+.||.|++||+++++.+..+.. ...|.+++|+|++.++++++ |+.|++||+.+++..
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV 636 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence 999999999999999 999999999999999999999888874 46799999999999888766 566999999998654
Q ss_pred eeeeeeeccC--------CC---CCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 622 CSKFLHSFQT--------GL---VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 622 ~~~~l~~~~~--------~~---~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
...... ... ++ ..+...+++++|||||++|++| .||+|+||++..
T Consensus 637 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 637 EDLKVD-LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEECCC-CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred hhhccc-cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 322111 000 00 0001247899999999999996 899999999853
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-34 Score=306.33 Aligned_cols=315 Identities=14% Similarity=0.130 Sum_probs=236.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
.+...+.+|.+.|. +++|+|+ +.|++|++||+.++...... . ....+.+|
T Consensus 7 ~~~~~~~~h~~~i~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~-------------~~~~~~~h 61 (397)
T 1sq9_A 7 ATANAGKAHDADIF--SVSACNSFTVSCSGDGYLKVWDNKLLDNENPK----------D-------------KSYSHFVH 61 (397)
T ss_dssp EEEEESSCSSSCEE--EEEECSSEEEEEETTSEEEEEESBCCTTCCGG----------G-------------GEEEEECC
T ss_pred hhhhhhhhhhcCeE--EEEecCCeEEEEcCCCEEEEEECCCcccccCC----------C-------------cceEEecC
Confidence 34566789999999 9999999 89999999999887622110 0 01124578
Q ss_pred Cc-eEEEEEcCC----C---CeEEEEcCCCcEEEEeccccCCCCc--eeEeecCCCCC-----CCCEEEEEEe----cCC
Q 005342 393 NQ-SRESTSLPD----A---DSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSF-----GGRVVRLIYS----HSG 453 (701)
Q Consensus 393 ~~-V~~l~~spd----g---~~l~s~s~d~~v~iw~~~~~~~~~~--~~~l~~~~~~~-----~~~v~~l~~s----pdg 453 (701)
.. |.+++|+|+ | ++|++++.|+.|++|++........ ... ...| ...|.+++|+ |++
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK----LDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE----ECCSCTTGGGSCEEEEEEECCC----
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee----ecccccccCCCcEEEEEEeeccCCCC
Confidence 78 999999999 9 9999999999999999983221111 222 2235 4899999999 999
Q ss_pred CE-EEEEECCCcEEEEecCCCCcc-ccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342 454 DF-LVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS-GGKI 527 (701)
Q Consensus 454 ~~-l~s~s~dg~i~vwd~~~~~~~-~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I 527 (701)
++ +++++.||.|++||+...... .+.... |.+ .+.+.. ......|...|.+++|+ + ++++++ ||.|
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLN------WSP-TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTC------CCC-EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceee------ccC-cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 99 999999999999998551100 000000 000 001100 00113578899999999 7 888888 9999
Q ss_pred EEEeCCCCcEEEEecC---C---CCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEeecC-------------
Q 005342 528 SIFSLETFQTLATFAN---P---PPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKG------------- 584 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~---~---~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~~~l~~------------- 584 (701)
++||+++++.+..+.. | ...|.+++|+|++ ++++++.| |.|++||+++++.+..+.+
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 9999999999999998 8 9999999999999 99999999 9999999999999999998
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC------------CCCCCCeEEEEEcCCC---
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL------------VPETTIVNHIQFHPDQ--- 649 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~------------~~~~~~v~~v~~spdg--- 649 (701)
|...|.+++|+|++++|++++.|+.|++||+.+++............+| ..|...|++++|+|+|
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 9999999999999999999999999999999998644322211000022 0002899999999998
Q ss_pred -------CEEEEE-ecCeEEEEECCCCc
Q 005342 650 -------IHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 650 -------~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
++|+++ .||.|++||+.+|+
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccceEEEecCCCcEEEEEcCCCC
Confidence 788886 79999999998874
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.2e-33 Score=317.85 Aligned_cols=352 Identities=9% Similarity=0.069 Sum_probs=269.7
Q ss_pred CcccccccCcc----ceeEEEeecCcc-eeeeEEEEcc--C-------CCCCeEEEEeccCC--------cccccccccc
Q 005342 307 DKLKFPSMDKS----RLLSLIKQIMDW-WVPYCINVMP--N-------ANNETISLKDFPTV--------SNLRYASSIL 364 (701)
Q Consensus 307 ~~i~iwd~~~~----~~~~~l~~h~~~-v~~~~l~fsp--d-------s~d~~i~lWd~~~~--------~~~~~~~~~~ 364 (701)
+.|++||+.++ +....+.+|.+. |. +++|+| + +.|++|++||+.++ .....
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~--~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~----- 111 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVT--TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE----- 111 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEE--EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEE--EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-----
Confidence 78999999999 999999999999 99 999999 7 78999999999865 33333
Q ss_pred CCCCCCCCCCc-------------ccccC-CC----C----CCCc---cccCCCc-eEEEEEcCCCC-eEEEEcCCCcEE
Q 005342 365 TDKPNQEGRPL-------------DASSG-DD----S----NDSS---CFNDNNQ-SRESTSLPDAD-SAVCAKSLEKSV 417 (701)
Q Consensus 365 ~~~~~~~~~~~-------------~~s~~-D~----~----~~~~---~l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~ 417 (701)
+.+|.. +++++ |. . +... .+.+|.. |.+++|+|+++ .+++++.|+.|+
T Consensus 112 -----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 112 -----FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp -----EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred -----hhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 222222 22222 21 1 2222 2778999 99999999998 899999999999
Q ss_pred EEeccccCCCCceeEeecCCCCCCC---CEEEEEEecC-CCEEEEEECCCcEEEEecCCCCc---c-c---cc-------
Q 005342 418 NLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQ---S-L---EE------- 479 (701)
Q Consensus 418 iw~~~~~~~~~~~~~l~~~~~~~~~---~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~---~-~---g~------- 479 (701)
+||+. .+++.. ....|.. .|.+++|+|+ ++++++++.||.|++||+.++.. . . ++
T Consensus 187 vwd~~----~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~ 259 (615)
T 1pgu_A 187 FYQGP----PFKFSA---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259 (615)
T ss_dssp EEETT----TBEEEE---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred EEeCC----Ccceee---eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence 99987 554443 2335777 8999999999 99999999999999999876654 1 1 11
Q ss_pred ------ccc----ceeeEEeeCCCCeEEeecccC---CCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 480 ------ENV----NMESQLYQPSSKLVMTNDIAA---DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 480 ------~~~----~~~i~~~d~~~~~~~~~~~~~---~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
... ...+++||..+++.+.. +.. .+...+.++.++ ++++++++ ||.|++||+.+++.+..+.+|
T Consensus 260 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~ 338 (615)
T 1pgu_A 260 SWLDSQKFATVGADATIRVWDVTTSKCVQK-WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338 (615)
T ss_dssp EESSSSEEEEEETTSEEEEEETTTTEEEEE-EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred EEcCCCEEEEEcCCCcEEEEECCCCcEEEE-EcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence 111 11389999998886543 211 124678888888 99999999 999999999988887777766
Q ss_pred CCCeEEEEEcCC--------------------------------------------------------------------
Q 005342 545 PPIATYFILLPQ-------------------------------------------------------------------- 556 (701)
Q Consensus 545 ~~~i~~l~~spd-------------------------------------------------------------------- 556 (701)
...|.+++| |+
T Consensus 339 ~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 339 NKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp SSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred CCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 655555544 32
Q ss_pred --------------------------------------C-eEEEEeC-CCcEEEEeCCCCceE-EeecCCCCCeEEEEEe
Q 005342 557 --------------------------------------D-LFAFGFD-DSSILVHCPCTKKTK-AKLKGHQNRITCLAYS 595 (701)
Q Consensus 557 --------------------------------------g-~l~~gs~-dg~I~iwd~~~~~~~-~~l~~h~~~V~~v~~s 595 (701)
+ ++++++. |+.|++||+.+++.. ..+.+|...|++++|+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 497 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC
Confidence 3 4444555 666666666665544 6677899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC----------CCCEEEEE-ecCeEEEEE
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----------DQIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp----------dg~~l~sg-~Dg~I~iwd 664 (701)
|++++|++++.|+.|++||+.+++.. ..+...|. ..|++++|+| ++++|+++ .||.|++||
T Consensus 498 ~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 498 PSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 99999999999999999999997532 22333265 8999999999 99999996 799999999
Q ss_pred CCCC-ceeeeeee----eeEEEEEeeEE
Q 005342 665 APTL-NHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 665 ~~~g-~~~~~l~~----i~~~~fs~~~~ 687 (701)
+.++ +++..+.+ |++++|+|+..
T Consensus 570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 570 VKRPMKIIKALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp SSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred CCCCceechhhhcCccceEEEEEcCCCC
Confidence 9998 78888876 99999998754
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9e-34 Score=303.28 Aligned_cols=290 Identities=10% Similarity=0.030 Sum_probs=233.4
Q ss_pred ccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 309 LKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 309 i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
..+|+..+.+....+.+|.+.|. +++|+|+ +.|++|++||+.++.....+ .
T Consensus 55 ~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~--------- 113 (383)
T 3ei3_B 55 PFIRSLKSYKLHRTASPFDRRVT--SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI----------Q--------- 113 (383)
T ss_dssp HHHHHHTTCEEEEEECCCSSCEE--EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE----------C---------
T ss_pred cccccccccceEEeccCCCCCEE--EEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee----------e---------
Confidence 34677788899999999999999 9999998 68999999999988766551 1
Q ss_pred CCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
+.+|.. |.+++|+| ++++|++++.|+.|++||+. ......+. ....+...|.+++|+|+++++++
T Consensus 114 --------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 180 (383)
T 3ei3_B 114 --------GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS----GSVIQVFA-KTDSWDYWYCCVDVSVSRQMLAT 180 (383)
T ss_dssp --------CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT----SCEEEEEE-CCCCSSCCEEEEEEETTTTEEEE
T ss_pred --------cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC----CCceEEEe-ccCCCCCCeEEEEECCCCCEEEE
Confidence 126777 99999999 78999999999999999997 44333333 22345688999999999999999
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCC
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLET 534 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~ 534 (701)
|+.||.|++||+ . +..+.. + ..|...|.+++|+ +. ++++++ |+.|++||+++
T Consensus 181 ~~~d~~i~i~d~---------------------~-~~~~~~-~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 181 GDSTGRLLLLGL---------------------D-GHEIFK-E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp EETTSEEEEEET---------------------T-SCEEEE-E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred ECCCCCEEEEEC---------------------C-CCEEEE-e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999999965 2 222211 2 3688999999999 66 899999 99999999987
Q ss_pred ----CcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----------------CCeEE
Q 005342 535 ----FQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----------------NRITC 591 (701)
Q Consensus 535 ----~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----------------~~V~~ 591 (701)
+..+..+ +|...|++++|+| ++ ++++++.|+.|++||+++++.+..+.+|. +.+..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 6677777 5899999999999 99 99999999999999999988777776553 23444
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
++|+|++++ +|+.|+.|++||+.+++.. ..+..+ +. ..+..++|+|++++|++|.|+.|+|||+++
T Consensus 316 ~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-----~~l~~~~~~---~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKRTIDIYDANSGGLV-----HQLRDPNAA---GIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT--CTTCCCCEEEEETTTCCEE-----EEECBTTBC---SCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred EEecCCccc--ccCCCCeEEEEecCCCcee-----eeecCCCCC---ceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 666666665 6789999999999998643 223322 22 677788999999999998899999999864
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-34 Score=303.61 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=205.9
Q ss_pred CcccccccCccc----eeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342 307 DKLKFPSMDKSR----LLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD 376 (701)
Q Consensus 307 ~~i~iwd~~~~~----~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (701)
+.|++|+..++. ......+|...|. +++|+|+ +.|++|+|||+.+++.....
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~---------------- 131 (357)
T 4g56_B 70 GSIWVFKDPEGAPNESLCTAGVQTEAGVT--DVAWVSEKGILVASDSGAVELWEILEKESLLVN---------------- 131 (357)
T ss_dssp EEEEEESSCC---CGGGCSEEEECSSCEE--EEEEETTTEEEEEETTSCEEEC--------CCC----------------
T ss_pred CeEEEEECCCCCcceeEecccCCCCCCEE--EEEEcCCCCEEEEECCCEEEEeeccccceeEEE----------------
Confidence 567788876654 3345567888899 9999999 88999999999988766541
Q ss_pred cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-
Q 005342 377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD- 454 (701)
Q Consensus 377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~- 454 (701)
.....+|.. |.+++|+|+|++|++|+.|+.|++||+. ++++.. .+.+|...|.+++|+|++.
T Consensus 132 ---------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~----~~~~~~---~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 132 ---------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS----QKAVLK---SYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ---------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEECTTCSS
T ss_pred ---------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEcCCCCCEEEEEEccCCCc
Confidence 112347888 9999999999999999999999999998 565444 3356899999999999985
Q ss_pred EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEE
Q 005342 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIF 530 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iw 530 (701)
.+++++.||.|++||+.+ ++.........+...+.+++|+ +.++++|+ |+.|++|
T Consensus 196 ~~~s~~~dg~v~~wd~~~---------------------~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRK---------------------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp CEEEEETTSCEEECCTTS---------------------SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred eeeeeccCCceEEEECCC---------------------CceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 788999999999997643 3322111113567789999998 56888888 9999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCC
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD 607 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D 607 (701)
|+++++.+..+.+|...|++++|+|++ +|++|+.|++|++||+++++.+..+ +|.+.|++++|+| ++.+|+|||.|
T Consensus 255 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 255 NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp ESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred ECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 999999999999999999999999998 7999999999999999999887765 7999999999999 89999999999
Q ss_pred CeEEEEECCCC
Q 005342 608 AQLCVWDAVGW 618 (701)
Q Consensus 608 ~~I~vwd~~~g 618 (701)
++|++||+.+.
T Consensus 334 g~v~iW~~~~~ 344 (357)
T 4g56_B 334 HKVLHHHLPSE 344 (357)
T ss_dssp SCEEEEECC--
T ss_pred CeEEEEECCCC
Confidence 99999999773
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.7e-33 Score=287.80 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=221.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |.+++|+|+|++|++|+.|+.|++|+.. .++... ...+|...|.+++|+|++++|++|+.||.|++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEK---TISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC----Ccccch---hhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 678999 9999999999999999999999999997 554444 23468899999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
||+ .+++.+.. + .+|...|.+++|+ ++++++++ |+.|++||+++++.+..+..|
T Consensus 92 wd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 92 WDV---------------------SSGKCLKT-L-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp EET---------------------TTCCEEEE-E-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEC---------------------CCCcEEEE-E-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 966 44444432 2 4688999999999 88999999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 545 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 545 ~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
..+|.+++|+|++ ++++|+.||.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++...
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 9999999999999 99999999999999999998887765 466789999999999999999999999999999975322
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeEE
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
. +. +|......+......+++.++++| .||.|++||+.+++.++.+.+ |.+++|+|...
T Consensus 229 --~---~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 229 --T---YT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp --E---EC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred --E---EE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence 2 22 332111223333334678899986 899999999999999999987 89999988644
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=291.61 Aligned_cols=294 Identities=9% Similarity=0.064 Sum_probs=241.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
.....+.+|.+.|. +++|+|+ +.|+.|++||+.+++.+..+ .
T Consensus 23 ~~~~~l~~h~~~v~--~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------------~ 71 (369)
T 3zwl_B 23 MKAIKLTGHERPLT--QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----------------------------D 71 (369)
T ss_dssp EEEEEEECCSSCEE--EEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----------------------------C
T ss_pred cccEEEEEeeceEE--EEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----------------------------h
Confidence 34456899999999 9999999 78999999999988877662 3
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-----Cc
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-----AT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~ 464 (701)
+|.. |.+++|+|++++|++++.|+.|++||+. .+++..... +...|.+++|+|+++++++++.+ |.
T Consensus 72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS----NGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 6777 9999999999999999999999999998 555444221 67889999999999999999999 99
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC--CeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD--SISCFALR--GSHLFSAS-GGKISIFSLET-FQTL 538 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~ 538 (701)
+.+||+....... . +.......-... ..|.. .+.+++|+ ++++++++ ||.|++||+++ ++.+
T Consensus 144 i~~~d~~~~~~~~-----~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 211 (369)
T 3zwl_B 144 INIYEIERDSATH-----E--LTKVSEEPIHKI-----ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV 211 (369)
T ss_dssp EEEEEEEECTTTC-----C--EEEECSSCSEEE-----ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE
T ss_pred EEEEEecCCccce-----e--ecccccceeeec-----cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999985543200 0 000000011111 13444 89999999 88999998 99999999998 7888
Q ss_pred EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC---------
Q 005342 539 ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--------- 608 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--------- 608 (701)
..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.++
T Consensus 212 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 212 DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 8999999999999999999 99999999999999999999998888 778899999999999999999988
Q ss_pred -----eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 609 -----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 609 -----~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
.+++||..+++.. ..+. +|. ..|++++|+|++++|+++ .||.|++|++.++....
T Consensus 291 ~~~~~~i~~~d~~~~~~~--~~~~----~~~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEEEI--GRVQ----GHF---GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp ----CEEEEEETTTCCEE--EEEE----CCS---SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred CCCcceeEEEecCCCcch--hhee----ccc---CcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 8999999997533 2222 555 899999999999999996 79999999998765443
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=332.01 Aligned_cols=339 Identities=9% Similarity=0.095 Sum_probs=246.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||+.+++++..+. |.+.|. +++|+|+ +.|++|++||+.++.+.... +....
T Consensus 79 ~~v~lWd~~~~~~~~~~~-~~~~V~--~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~---------i~~~~----- 141 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVF-VPGKIT--SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK---------LDNLQ----- 141 (902)
T ss_dssp CEEEEEETTTCSEEEEEE-CSSCEE--EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE---------ECCHH-----
T ss_pred CeEEEEECCCCcEEEEEc-CCCCEE--EEEECCCCCEEEEEcCCCcEEEEECCCCccccce---------ecccc-----
Confidence 899999999999999886 667899 9999999 78999999999988764210 00000
Q ss_pred CCCCCCC-ccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeE-eecC--------------CCCCC
Q 005342 380 GDDSNDS-SCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLP--------------DNSFG 441 (701)
Q Consensus 380 ~D~~~~~-~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~--------------~~~~~ 441 (701)
.. ..+.+|.. |.+++|+|+ +..+++|+.|+.| +||+. .+++.. +... ...|.
T Consensus 142 -----~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 142 -----KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp -----HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred -----ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccC
Confidence 00 12357888 999999996 5789999999999 99997 454433 1110 01235
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc--------c--------------------------------ccc
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL--------E--------------------------------EEN 481 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~--------g--------------------------------~~~ 481 (701)
..|.+++|+|||++|++|+.||.|++||+.++.... + ...
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 789999999999999999999999999986543200 0 000
Q ss_pred cc---------eeeEEe---------------------------------------------------------------
Q 005342 482 VN---------MESQLY--------------------------------------------------------------- 489 (701)
Q Consensus 482 ~~---------~~i~~~--------------------------------------------------------------- 489 (701)
.. ..+.+|
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 00 012222
Q ss_pred --------eCCCCeEEeec-----ccCCCCCCeEEEE----------------------------------ec--CCEEE
Q 005342 490 --------QPSSKLVMTND-----IAADPKDSISCFA----------------------------------LR--GSHLF 520 (701)
Q Consensus 490 --------d~~~~~~~~~~-----~~~~~~~~v~~l~----------------------------------~s--~~~l~ 520 (701)
+..+|...... ....|...|++++ |+ +++++
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 22222111000 0001223444443 34 67899
Q ss_pred EEe-CCeEEEEeCCCCcEE----EE--ec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc----------
Q 005342 521 SAS-GGKISIFSLETFQTL----AT--FA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---------- 577 (701)
Q Consensus 521 s~s-dg~I~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~---------- 577 (701)
+|+ |++|++||+.++... .. +. +|...|++++|+||| +||+|+.||+|++||+.+++
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 999 999999999877421 11 11 788899999999999 99999999999999997662
Q ss_pred -----------------------------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 578 -----------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 578 -----------------------------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
++..+.+|.+.|++++||||| +||+|+.|++|++||++++..+.
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence 367788999999999999999 99999999999999998875433
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEc-----CCC---CEEEEE-ecCeEEEEEC---CCCceeeeeee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFH-----PDQ---IHLLSI-HEGQIDVYEA---PTLNHTSQVLL 676 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~s-----pdg---~~l~sg-~Dg~I~iwd~---~~g~~~~~l~~ 676 (701)
...+..+..+|. ..|++++|+ ||| ++|++| .|++|++||+ .+|+...++.+
T Consensus 611 ~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 611 MENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp EEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred EeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecC
Confidence 222221222555 899999999 886 789986 7999999999 88998888766
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=313.26 Aligned_cols=304 Identities=10% Similarity=0.085 Sum_probs=240.8
Q ss_pred CcccccccCccc---eeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC----ccccccccccCCCCCCCC
Q 005342 307 DKLKFPSMDKSR---LLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV----SNLRYASSILTDKPNQEG 372 (701)
Q Consensus 307 ~~i~iwd~~~~~---~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~ 372 (701)
+.|++||+.++. .+..+ .|...|. +++|+|+ +.|+.|++||+.+. .....
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~-~~~~~v~--~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~------------- 108 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASL-QVDSKFN--DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR------------- 108 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCC-CCSSCEE--EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-------------
T ss_pred CeEEEEEccCCCCCcEEEEE-ecCCceE--EEEECCCCCeEEEEccCCeEEEeecccccccccchhh-------------
Confidence 789999999886 44444 5788899 9999999 68999999999872 22222
Q ss_pred CCcccccCCCCCCCccccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEE
Q 005342 373 RPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRL 447 (701)
Q Consensus 373 ~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l 447 (701)
+.+|.. |.+++|+|+ +++|++|+.|+.|++||+....... ....+ .....|...|.++
T Consensus 109 ----------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 109 ----------------FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISL 171 (416)
T ss_dssp ----------------CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCEE
T ss_pred ----------------ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc-ccccCCCCCeeEE
Confidence 356777 999999998 8999999999999999998422100 11111 1224588899999
Q ss_pred EEecC-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc-----CCCCCCeEEEEec--C-CE
Q 005342 448 IYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-----ADPKDSISCFALR--G-SH 518 (701)
Q Consensus 448 ~~spd-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~l~~s--~-~~ 518 (701)
+|+|+ +..+++++.||.|++||+ .+++.+.. +. .+|...|.+++|+ + .+
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~---------------------~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDL---------------------KAKKEVIH-LSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEET---------------------TTTEEEEE-ECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred EeCCCCCcEEEEEcCCCCEEEEEC---------------------CCCCcceE-EeccccccccCCceEEEEECCCCCCE
Confidence 99999 789999999999999976 33443322 11 1237889999999 4 58
Q ss_pred EEEEe-CC---eEEEEeCCCC-cEEEEec-CCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE
Q 005342 519 LFSAS-GG---KISIFSLETF-QTLATFA-NPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 590 (701)
Q Consensus 519 l~s~s-dg---~I~iwd~~~~-~~~~~~~-~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~ 590 (701)
+++++ |+ .|++||++++ ..+..+. +|...|++++|+| ++ ++++++.||.|++||+++++.+..+.+|...|+
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCF 309 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCC
T ss_pred EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceE
Confidence 88888 77 9999999986 5777777 8999999999999 78 999999999999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEECCCCeeeeeeee------------e-----------------eccCCCCCCCCCe
Q 005342 591 CLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL------------H-----------------SFQTGLVPETTIV 640 (701)
Q Consensus 591 ~v~~spdg-~~l~s~s~D~~I~vwd~~~g~~~~~~~l------------~-----------------~~~~~~~~~~~~v 640 (701)
+++|+|++ .+|++++.|+.|++||+.++.......- . ..+..+. .++
T Consensus 310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 386 (416)
T 2pm9_A 310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG---EPS 386 (416)
T ss_dssp CEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC---CCS
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc---CCc
Confidence 99999998 8999999999999999988642211000 0 0001122 678
Q ss_pred EEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 641 NHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 641 ~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
++++|+|||++|+++ .|++|+||++.+.
T Consensus 387 ~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 387 PAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 899999999999997 7999999999765
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=283.29 Aligned_cols=283 Identities=12% Similarity=0.087 Sum_probs=233.8
Q ss_pred cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
.++.+.+.+|.+.|. +++| |+ +.|+.|++||+.++..... +
T Consensus 8 ~~~~~~l~~h~~~v~--~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------------------------~ 55 (313)
T 3odt_A 8 YQLSATLKGHDQDVR--DVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV-----------------------------V 55 (313)
T ss_dssp CEEEEEECCCSSCEE--EEEE-EETTEEEEEETTSEEEEEEESSSEEEEE-----------------------------E
T ss_pred HHHHHHhhCCCCCcE--EEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE-----------------------------e
Confidence 377889999999999 9999 66 8999999999988766555 2
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
..|.. |.+++|+|+++++++|+.|+.+++|++.+......... ...|...|.++.| +++++++++.||.+++|
T Consensus 56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT----LIGHQGNVCSLSF--QDGVVISGSWDKTAKVW 129 (313)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc----hhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence 35666 99999999999999999999999999975332222222 2358899999999 57899999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecC-
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN- 543 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~- 543 (701)
|. +..... + ..|...+.++++. ++++++++ ||.|++|| .++....+..
T Consensus 130 d~-----------------------~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 130 KE-----------------------GSLVYN-L-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ET-----------------------TEEEEE-E-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred cC-----------------------CcEEEe-c-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 51 222211 2 3688899999987 88999999 99999999 4566677776
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 544 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 544 ~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
+...+.+++|+|++.+++|+.||.|++||+++++.+..+.+|.+.|++++|+|++ .+++++.||.|++||+.+++...
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~- 260 (313)
T 3odt_A 183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ- 260 (313)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE-
T ss_pred CcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE-
Confidence 8899999999999988899999999999999999999999999999999999999 58899999999999999975332
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeee
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
.+. .|. ..|++++|+|++++++++.||.|++||+.+++.....
T Consensus 261 -~~~----~~~---~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 261 -VIT----LPA---ISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -EEE----CSS---SCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred -EEe----ccC---ceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 222 444 7899999999999766679999999999988765543
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.7e-34 Score=309.64 Aligned_cols=288 Identities=14% Similarity=0.088 Sum_probs=223.9
Q ss_pred ceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCF 389 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l 389 (701)
+.......|...|+ |++|+|. +.||+|+|||+.++.....+ .+
T Consensus 110 ~~~~~~~~~~~~V~--~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------------~~ 160 (435)
T 4e54_B 110 RILQKAAPFDRRAT--SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------------KG 160 (435)
T ss_dssp TSCCEEEECSSCEE--EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---------------------------CC
T ss_pred eecccCCCCCCCEE--EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---------------------------Ec
Confidence 44556788999999 9999995 78999999999887654441 12
Q ss_pred cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
.+|.. |++++|+| ++.+|++|+.||+|++||+. ++.+..+. ....+...+.+++|+|++++|++|+.||.|++
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~ 235 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK----GNILRVFA-SSDTINIWFCSLDVSASSRMVVTGDNVGNVIL 235 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT----SCEEEEEE-CCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc----CCceeEEe-ccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence 47888 99999998 78999999999999999996 44433322 22334566889999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEE---
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLAT--- 540 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~--- 540 (701)
||+++ ..+.. + .+|...|.+++|+ + .++++++ |+.|++||+++++....
T Consensus 236 wd~~~---------------------~~~~~--~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 236 LNMDG---------------------KELWN--L-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp EESSS---------------------CBCCC--S-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred eccCc---------------------ceeEE--E-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 97632 22221 2 4789999999998 4 4788888 99999999988764433
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCC------CeEEEEEecCCCEEEEEe--------
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN------RITCLAYSLSLNVLVSSG-------- 605 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~v~~spdg~~l~s~s-------- 605 (701)
..+|...|++++|+|+| +|++|+.||.|++||+.++.....+.+|.. .+....|+|++.++++++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 35688999999999999 999999999999999999988877766643 234567888887777664
Q ss_pred ----CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE-EEcCCCCEEEEEecCeEEEEECCCCcee
Q 005342 606 ----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI-QFHPDQIHLLSIHEGQIDVYEAPTLNHT 671 (701)
Q Consensus 606 ----~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v-~~spdg~~l~sg~Dg~I~iwd~~~g~~~ 671 (701)
.++.|++||..+|+... .+..+|. ..|.++ +|+|+|++|++|.|++|+|||+++|+..
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~-----~l~~~~~---~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMC-----QLYDPES---SGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEE-----EECCSSC---CCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred EEecCCCEEEEEECCCCcEEE-----EEeCCCC---CcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 34679999999986332 2344555 778887 6999999999998999999999998764
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=295.06 Aligned_cols=291 Identities=11% Similarity=0.038 Sum_probs=225.8
Q ss_pred eEEEeecCcceeeeEEEEccC--------CC---CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcc
Q 005342 320 LSLIKQIMDWWVPYCINVMPN--------AN---NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 388 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd--------s~---d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~ 388 (701)
.+.+.+|.+.|. +++|+|+ +. |++|++||+.+++.....
T Consensus 11 ~~~~~~h~~~v~--~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~---------------------------- 60 (357)
T 3i2n_A 11 AHIQKGFNYTVF--DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR---------------------------- 60 (357)
T ss_dssp EEEEEECSSCEE--EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------------------
T ss_pred hhhccCCCCceE--EEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee----------------------------
Confidence 345688999999 9999997 33 999999999988765441
Q ss_pred ccCCCc-eEEEEEcCC---CCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEE------ecCCCEEE
Q 005342 389 FNDNNQ-SRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIY------SHSGDFLV 457 (701)
Q Consensus 389 l~~h~~-V~~l~~spd---g~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~------spdg~~l~ 457 (701)
..+|.. |.+++|+|+ |++|++|+.||.|++|++. .++ ... ...+|...|.++.| +|++++|+
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE----APEMPVY---SVKGHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT----SCSSCSE---EECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC----CCCccEE---EEEecccceEEEeeccccccCCCccEEE
Confidence 125666 999999999 7999999999999999998 333 222 22358899999955 68999999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEE----ec--CCEEEEEe-CCeEEEE
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA----LR--GSHLFSAS-GGKISIF 530 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~----~s--~~~l~s~s-dg~I~iw 530 (701)
+++.||.|++||+..... .-..+. .....+...+.+++ |+ ++++++++ ||.|++|
T Consensus 134 ~~~~d~~i~vwd~~~~~~-----------------~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDD-----------------PVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp EEETTSCEEEECTTSCSS-----------------CSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred EEeCCCeEEEEeCCCCCC-----------------cceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 999999999997744310 000110 01112244888888 55 88999999 8999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcC---CC-eEEEEeCCCcEEEEeCCCCceEEeec-----CCCCCeEEEEEecCCC-E
Q 005342 531 SLETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLN-V 600 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~sp---dg-~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~v~~spdg~-~ 600 (701)
|+++++.... ..|...|.+++|+| ++ .+++|+.||.|++||+++++.+..+. +|...|++++|+|+++ +
T Consensus 196 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 196 DLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp ETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 9999887655 44888999999999 88 99999999999999998876655554 8999999999999998 8
Q ss_pred EEEEeCCCeEEEEECCCCeeee--------------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEE-EE-ecCeEEEEE
Q 005342 601 LVSSGADAQLCVWDAVGWKKLC--------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYE 664 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~g~~~~--------------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~-sg-~Dg~I~iwd 664 (701)
+++++.||.|++||+..+.... ...+..+. +|. ..|++++|+|++++|+ ++ .|+.|++||
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~---~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LST---QPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCS---SCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCC---CCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 9999999999999998754221 12333233 454 8999999999999988 55 799999999
Q ss_pred CCCCce
Q 005342 665 APTLNH 670 (701)
Q Consensus 665 ~~~g~~ 670 (701)
+.+++.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987764
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-32 Score=288.31 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=212.1
Q ss_pred cccCCCc-eEEEEE-----cC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 388 CFNDNNQ-SRESTS-----LP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 388 ~l~~h~~-V~~l~~-----sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
.|.+|.. |++++| +| ++++|++|+.|++|++|++......+..........+|...|.+++|+|++.++++|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 3779999 999999 77 9999999999999999999742211111111113357899999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
.|++|++||+ .+++.+.. + .+|...|.+++|+ ++++++++ |+.|++||+.. ..
T Consensus 96 ~D~~v~lwd~---------------------~~~~~~~~-~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 96 WDKTLRLWDL---------------------RTGTTYKR-F-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp TTSEEEEEET---------------------TSSCEEEE-E-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE
T ss_pred CCCcEEEEEC---------------------CCCcEEEE-E-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc
Confidence 9999999965 44554432 2 4799999999999 88999999 99999999974 33
Q ss_pred EEEec---CCCCCeEEEEEcCCC-----------eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 538 LATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 538 ~~~~~---~~~~~i~~l~~spdg-----------~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
..... +|...|.+++|+|++ ++++|+.||.|++|| .+++....+.+|...|++++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence 33333 678889999999873 699999999999999 456777888999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee--eee------
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS--QVL------ 675 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~--~l~------ 675 (701)
|+.|++|++||+..... ....+. .. ..|++++|+|+++++++|.|+.|++||+.+++... .+.
T Consensus 231 gs~dg~v~iwd~~~~~~----~~~~~~-~~----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTY----PQREFD-AG----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EETTCEEEEEESSCCSS----CSEEEE-CS----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcCCCeEEEEECCCCcc----cceeec-CC----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 99999999999954321 111111 11 66999999999999988899999999998876544 332
Q ss_pred -----e----eeEEEEEeeEE
Q 005342 676 -----L----ISHIMFVQIVV 687 (701)
Q Consensus 676 -----~----i~~~~fs~~~~ 687 (701)
+ |++++|+|+..
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSC
T ss_pred hhhhcCCCCceEEEEECCCCC
Confidence 2 88999998643
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-32 Score=294.86 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=213.0
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCC--------------CCCCCCEEEEEEecCCC
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPD--------------NSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~--------------~~~~~~v~~l~~spdg~ 454 (701)
+|.. |.+++|+|||++||+|+ ++.+++|++. .+.... +.... ..+...|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~----~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS----DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT----TCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEec----CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 5777 99999999999999987 5899999997 444322 11000 01223599999999999
Q ss_pred EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEe
Q 005342 455 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd 531 (701)
+|++|+.||.|++||+ .+++.... + .+|...|.+++|+ +++|++++ |+.|++||
T Consensus 137 ~l~s~~~d~~i~iwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 137 FLATGAEDRLIRIWDI---------------------ENRKIVMI-L-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp EEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCeEEEEEC---------------------CCCcEEEE-E-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 9999999999999965 55554432 2 5799999999999 88999999 99999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEee-------cCCCCCeEEEEEecCCCEEE
Q 005342 532 LETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLV 602 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~v~~spdg~~l~ 602 (701)
+++++....+. +...+.+++++| ++ ++++|+.||.|++||+++++.+..+ .+|...|.+++|+|+|++|+
T Consensus 194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 99999888876 567899999999 77 9999999999999999999888776 57999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeee-------eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342 603 SSGADAQLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~-------~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l 674 (701)
+|+.|++|++||+.++.... ......+ .+|. ..|.+++|+|++++|++| .|+.|++||+.+++.+..+
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEE-ECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-eccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence 99999999999998743211 0111112 2555 889999999999999996 7999999999999999998
Q ss_pred ee----eeEEEEEee
Q 005342 675 LL----ISHIMFVQI 685 (701)
Q Consensus 675 ~~----i~~~~fs~~ 685 (701)
.+ |.+++|++.
T Consensus 349 ~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 349 QGHRNSVISVAVANG 363 (393)
T ss_dssp ECCSSCEEEEEECSS
T ss_pred CCCCCCEEEEEecCC
Confidence 87 999999864
No 49
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-33 Score=299.67 Aligned_cols=285 Identities=12% Similarity=0.153 Sum_probs=230.1
Q ss_pred EEeecCcceeeeEEEEccC-----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 322 LIKQIMDWWVPYCINVMPN-----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
...+|.+.|. +++|+|+ +.++.|++||+.++..+.. +..+.. .
T Consensus 13 ~~~~h~~~v~--~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~----------~~~~~~--------------~ 66 (366)
T 3k26_A 13 LKEDHNQPLF--GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL----------LQSYVD--------------A 66 (366)
T ss_dssp EECTTCSCEE--EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE----------EEEEEC--------------S
T ss_pred eecCCCCceE--EEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe----------eeeccc--------------c
Confidence 4458999999 9999982 5677999999998887666 222211 2
Q ss_pred CCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~ 464 (701)
.|.. |.+++|+|+ |++|++|+.||.|++||+. .++... ...+|...|.+++|+| ++.++++++.||.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~----~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI----TMQCIK---HYVGHGNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT----TCCEEE---EEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch----hceEee---eecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 3666 999999999 6799999999999999997 454433 2235889999999999 9999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
|++||+ .+++.+.. +. .+|...|.+++|+ ++++++++ ||.|++||+++++...
T Consensus 140 i~iwd~---------------------~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 140 LRLWNI---------------------QTDTLVAI-FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 197 (366)
T ss_dssp EEEEET---------------------TTTEEEEE-ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH
T ss_pred EEEEEe---------------------ecCeEEEE-ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc
Confidence 999966 44443322 21 3688999999999 88999999 9999999998876544
Q ss_pred Eec----------------------------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce------------
Q 005342 540 TFA----------------------------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------------ 578 (701)
Q Consensus 540 ~~~----------------------------~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~------------ 578 (701)
.+. +|...|.+++|+ + ++++++.||.|++||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 333 388899999999 6 999999999999999987643
Q ss_pred --EEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEE
Q 005342 579 --KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 579 --~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~ 653 (701)
+..+.+|...|++++|+|+ +++|++|+.||.|++||+.+++..... ...+..+ |. ..|++++|+|++++|+
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~---~~v~~~~~s~~~~~l~ 351 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK-CTTLTHHKCG---AAIRQTSFSRDSSILI 351 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE-EEEECCTTCC---SCEEEEEECTTSSEEE
T ss_pred heeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc-ceEEcccccC---CceEEEEeCCCCCeEE
Confidence 7788899999999999999 999999999999999999997543211 1213322 13 8999999999999999
Q ss_pred EE-ecCeEEEEECCC
Q 005342 654 SI-HEGQIDVYEAPT 667 (701)
Q Consensus 654 sg-~Dg~I~iwd~~~ 667 (701)
++ .||.|++||+.+
T Consensus 352 s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 352 AVCDDASIWRWDRLR 366 (366)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EEeCCCEEEEEEecC
Confidence 96 899999999853
No 50
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.4e-33 Score=285.66 Aligned_cols=247 Identities=14% Similarity=0.163 Sum_probs=199.1
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i 465 (701)
+.+|.. |++++|+|+|++||+|+.|++|++|++... ..++.. .+.+|.+.|.+++|+|+ |++|++|+.||+|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--~~~~~~---~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--THKLID---TLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--CBCCCE---EECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--CcEEEE---EEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 568988 999999999999999999999999999621 112222 33479999999999864 8999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc--EE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ--TL 538 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~--~~ 538 (701)
++||+.++. ...+.. + .+|...|.+++|+ |.+|++++ |+.|++||++++. ..
T Consensus 80 ~iWd~~~~~-------------------~~~~~~-~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 80 MIWKEENGR-------------------WSQIAV-H-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEEEBSSSC-------------------BCCCEE-E-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEEEcCCCc-------------------eEEEEE-e-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 999774321 011111 2 4688899999998 57899999 9999999998763 24
Q ss_pred EEecCCCCCeEEEEEcCC-------------C-eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecCC--
Q 005342 539 ATFANPPPIATYFILLPQ-------------D-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-- 598 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spd-------------g-~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spdg-- 598 (701)
..+.+|...|.+++|+|+ + +|++|+.|++|++||+++++ ....+.+|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 567789999999999996 6 89999999999999998765 667889999999999999985
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 599 -NVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 599 -~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
++||+++.|++|++||+.++.... ...+. ..+|. ..|.+++|+|+|++|+++ .|++|+||+..
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--~~~~~---~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESS--SSCCS---SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEECCCcEEEEEeCCCCCccceeeee--cccCC---CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 799999999999999998742111 11111 12444 889999999999999985 89999999986
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-32 Score=285.71 Aligned_cols=262 Identities=11% Similarity=0.040 Sum_probs=220.2
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
.+|.. |.+++|+|+++++++++ ||.|++|++...........+ ....|...|.+++|+|+++++++++.||.|++|
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 47888 99999999999999999 999999999743222222221 223578999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 545 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~ 545 (701)
|+... ....... + ..|...|.+++|+ ++++++++ ||.|++||+++++.+..+.+|.
T Consensus 125 d~~~~-------------------~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 125 DLAAP-------------------TPRIKAE-L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp ECCCC---------------------EEEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ECCCC-------------------Ccceeee-c-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 76332 1112211 2 3678899999999 88999998 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
..+.+++|+|++ .+++++.||.|++||+++++.+..+. |...+.+++|+|+++++++++.|+.|++||+.+++..
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--- 259 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--- 259 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---
Confidence 999999999999 99999999999999999999888775 7788999999999999999999999999999987532
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEEEeeE
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQIV 686 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~~ 686 (701)
. +. .|. ..|.+++|+|++++++++ .||.|++||+.+++.+..... |++++|+|+.
T Consensus 260 ~---~~-~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 260 Q---LH-LHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318 (337)
T ss_dssp E---EC-CCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred E---Ec-CCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence 2 22 444 889999999999999996 799999999999998866554 9999999864
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-32 Score=295.73 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=231.5
Q ss_pred eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342 324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE 397 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~ 397 (701)
.+|.+.+...++.|+++ +.|+.|++||+.++.....+ . ..|.. |.+
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~----------~------------------~~~~~~v~~ 139 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA----------E------------------TDESTYVAS 139 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE----------E------------------CCTTCCEEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee----------e------------------cCCCCCEEE
Confidence 46666666557888888 88999999999998876652 1 13666 999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
++|+|+|++|++|+.||.|++||+. .++... ...+|...|.+++| +++.+++|+.||.|++||+..
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~---~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~----- 205 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLR---TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI----- 205 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT----TCCEEE---EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS-----
T ss_pred EEECCCCCEEEEECCCCeEEEEECc----CCeEEE---EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc-----
Confidence 9999999999999999999999997 454433 22368899999999 467999999999999997732
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEc
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 554 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 554 (701)
.+..... + .+|...|.+++|+ +.++++++ ||.|++||+++++.+..+.+|...|.+++|+
T Consensus 206 ---------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 206 ---------------ANHQIGT-L-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp ---------------SSCEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred ---------------CcceeeE-E-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence 1122211 2 3688999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC--eEEEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342 555 PQD--LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 555 pdg--~l~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
|++ ++++|+ .|+.|++||+.+++.+..+. |...|.+++|+|+++++++++ .||.|++||+.++.......+.
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~- 346 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP- 346 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-
Confidence 988 777765 79999999999999998887 667899999999999999854 8999999999997644433333
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
+|. ..|.+++|+|+|++|+++ .||.|++||+.+++.+....
T Consensus 347 ---~h~---~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 347 ---AHD---TRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ---CCS---SCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ---CCC---CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 555 899999999999999996 79999999999998776543
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=286.00 Aligned_cols=270 Identities=13% Similarity=0.149 Sum_probs=207.0
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
+.+|.. |++++|+|+ +|++|+.|++|++|++. .+....+. +...+|...|.+++|+|++++|++|+.|+.|+
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~----~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVK----YDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECS----SSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEec----CCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 678999 999999998 99999999999999997 33211111 22234889999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC----CcEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLA 539 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~----~~~~~ 539 (701)
+||+..... .......... + .+|...|.+++|+ |++|++|+ |+.|++||+.. .+.+.
T Consensus 84 iw~~~~~~~--------------~~~~~~~~~~-~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 84 IWAKEESAD--------------RTFEMDLLAI-I-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp EEEC---------------------CCCEEEEE-E-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred EEEcccCcC--------------ccccceeEEE-E-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 998743210 0012222221 2 4799999999999 88999999 99999999943 24677
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEE
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWD 614 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~v~~spd--g~~l~s~s~D~~I~vwd 614 (701)
.+.+|...|.+++|+|++ +|++|+.|++|++||..++ +.+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 888999999999999999 9999999999999998776 678889999999999999998 77999999999999999
Q ss_pred CCCCee---eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCc--eeeee-ee-----eeEEEE
Q 005342 615 AVGWKK---LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQV-LL-----ISHIMF 682 (701)
Q Consensus 615 ~~~g~~---~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~--~~~~l-~~-----i~~~~f 682 (701)
+.++.. ........+...|. ..|++++|+|++ +|++ |.||+|+|||..+++ .+... .+ |+.++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE
T ss_pred ecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE
Confidence 876421 00122232334465 899999999876 5566 589999999998874 33332 22 888999
Q ss_pred Ee
Q 005342 683 VQ 684 (701)
Q Consensus 683 s~ 684 (701)
+|
T Consensus 304 ~~ 305 (330)
T 2hes_X 304 LE 305 (330)
T ss_dssp C-
T ss_pred ec
Confidence 87
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-33 Score=299.55 Aligned_cols=293 Identities=11% Similarity=0.045 Sum_probs=236.5
Q ss_pred Cccccccc----Cccc------eeEEEee----------cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccc
Q 005342 307 DKLKFPSM----DKSR------LLSLIKQ----------IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRY 359 (701)
Q Consensus 307 ~~i~iwd~----~~~~------~~~~l~~----------h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~ 359 (701)
+.|++||+ .+++ ....+.. |.+.|. +++|+|+ +.|+.|++|| .++.....
T Consensus 68 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~ 144 (425)
T 1r5m_A 68 SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT--CLAWSHDGNSIVTGVENGELRLWN-KTGALLNV 144 (425)
T ss_dssp TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE--EEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE
T ss_pred ceEEEEEEecccCCccccccccccccccccccccccccCCCCceE--EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee
Confidence 88999999 8888 5666665 787899 9999999 7899999999 45554444
Q ss_pred cccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC
Q 005342 360 ASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN 438 (701)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~ 438 (701)
+.+|.. |.+++|+|++++|++++.|+.|++||+. .++.... ..
T Consensus 145 -----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~---~~ 188 (425)
T 1r5m_A 145 -----------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI----SGTVMQH---FE 188 (425)
T ss_dssp -----------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT----TTEEEEE---EC
T ss_pred -----------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC----CCcEEEE---ee
Confidence 246777 9999999999999999999999999997 4443331 11
Q ss_pred CCCCC---------------EEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC
Q 005342 439 SFGGR---------------VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 503 (701)
Q Consensus 439 ~~~~~---------------v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~ 503 (701)
.+... +.++.|+|++. +++++.||.|++||+. ++..... + .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~---------------------~~~~~~~-~-~ 244 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQIT---------------------EKTPTGK-L-I 244 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETT---------------------CSSCSEE-E-C
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcC---------------------CCceeee-e-c
Confidence 23333 89999999865 8899999999999763 3332221 2 3
Q ss_pred CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 005342 504 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 580 (701)
Q Consensus 504 ~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~ 580 (701)
.|...|.+++|+ ++++++++ ||.|++||+++++.+..+.+|...+.+++|+|++.+++++.|+.|++||+++++.+.
T Consensus 245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence 688899999999 88999999 999999999999999999999999999999999988899999999999999999999
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee---------------eeeeeeeccCCCCCCCC--CeEEE
Q 005342 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------------CSKFLHSFQTGLVPETT--IVNHI 643 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~---------------~~~~l~~~~~~~~~~~~--~v~~v 643 (701)
.+.+|...|.+++|+|++++|++++.||.|++||+.+++.. ....+..+. +|. . .|+++
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~ 400 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ---DNDYIFDL 400 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTT---CCCCEEEE
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc---cCCceEEE
Confidence 99999999999999999999999999999999999876400 001333333 332 4 89999
Q ss_pred EEcCCCCEEEEE-ecCeEEEEECC
Q 005342 644 QFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 644 ~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
+|+|++++|+++ .||.|++||++
T Consensus 401 ~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 SWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECTTSSEEEEEESSSCCEEEECC
T ss_pred EccCCCceEEEEecCceEEEEeec
Confidence 999999999986 89999999985
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-31 Score=281.28 Aligned_cols=263 Identities=16% Similarity=0.175 Sum_probs=217.3
Q ss_pred ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
|+||.+ |++++|+|+ +++|+||+.|++|++||+....... .+.. ...+|...|.+++|+|+|+++++++.|+.+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~---~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR---ALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---EEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 678999 999999998 6899999999999999997432211 1111 335689999999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE-EEEe
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT-LATF 541 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~-~~~~ 541 (701)
++|+. ..+..... . ..+...+....++ +.++++++ |+.+++||...... ....
T Consensus 111 ~~~~~---------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 111 RLWDL---------------------TTGTTTRR-F-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred eEEee---------------------cccceeee-e-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 99965 33332221 1 2456677778887 88899999 99999999976544 3445
Q ss_pred cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 542 ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
.+|...+..++|++++ ++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|++|++||+.++
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 6788899999999887 7889999999999999999999999999999999999999999999999999999999997
Q ss_pred eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee-------------eeEEEEEee
Q 005342 619 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL-------------ISHIMFVQI 685 (701)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~-------------i~~~~fs~~ 685 (701)
+... .+. ++ ..|.++.|+|++.+++++.|+.|++||++++..+..+.. |++++|+|+
T Consensus 248 ~~~~--~~~----~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 248 KHLY--TLD----GG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp EEEE--EEE----CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred ceee--eec----CC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 5332 222 33 789999999999988888999999999999888776653 899999987
Q ss_pred EE
Q 005342 686 VV 687 (701)
Q Consensus 686 ~~ 687 (701)
..
T Consensus 318 g~ 319 (340)
T 4aow_A 318 GQ 319 (340)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-32 Score=298.56 Aligned_cols=287 Identities=14% Similarity=0.108 Sum_probs=228.5
Q ss_pred EEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCe
Q 005342 334 CINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADS 406 (701)
Q Consensus 334 ~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~ 406 (701)
+++|+|+ +.|+.+++||+.++..... + ..|..+....|+|++++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------~-------------------~~~~~~~~~~~~~~~~~ 111 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------L-------------------KRADYTAVDTAKLQMRR 111 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------S-------------------CSCCEEEEEEECSSSCE
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------E-------------------ecCCceEEEEEecCCCE
Confidence 7889998 7799999999988876555 2 23322556688999999
Q ss_pred EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceee
Q 005342 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 486 (701)
Q Consensus 407 l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i 486 (701)
|++|+.|+.|++||+. .+++.. ...+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 112 l~~~~~dg~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~---------------- 168 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSN----FNLQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV---------------- 168 (420)
T ss_dssp EEEEETTSCEEEECTT----SCEEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET----------------
T ss_pred EEEEECCCCEEEEeCC----Ccceee---ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC----------------
Confidence 9999999999999997 555544 33468999999999999999999999999999976
Q ss_pred EEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC---CCC-------------
Q 005342 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP---PPI------------- 547 (701)
Q Consensus 487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~---~~~------------- 547 (701)
.+++.+.. + .+|...|.+++|+ ++++++++ ||.|++||+++++.+..+..+ ...
T Consensus 169 -----~~~~~~~~-~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 169 -----KDGSNPRT-L-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp -----TTCCCCEE-E-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred -----CCCcCceE-E-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 33332221 2 3789999999999 88999999 999999999999998888743 333
Q ss_pred --------eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECC
Q 005342 548 --------ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAV 616 (701)
Q Consensus 548 --------i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~-~l~s~s~D~~I~vwd~~ 616 (701)
+.+++|+|++ ++++|+.||.|++||+++++.+..+. +|...|++++|+|+++ +|++|+.||.|++||++
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 4445567899 99999999999999999988777665 4888999999999998 99999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee---------eeee----eeEEEE
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS---------QVLL----ISHIMF 682 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~---------~l~~----i~~~~f 682 (701)
+++. ++..+..+|. ..|+++.| |++++|+++ .|+.|++|++.+.+... .+.+ |.+++|
T Consensus 322 ~~~~----~~~~~~~~~~---~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 322 SPEC----PVGEFLINEG---TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp CTTS----CSEEEEESTT---SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred CCcC----chhhhhccCC---CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence 8742 2222334454 77888855 578888887 79999999997742211 1112 889999
Q ss_pred EeeEE
Q 005342 683 VQIVV 687 (701)
Q Consensus 683 s~~~~ 687 (701)
+|+..
T Consensus 394 s~~~~ 398 (420)
T 3vl1_A 394 VSDDE 398 (420)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 98754
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=299.58 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=228.5
Q ss_pred ceeeeEEEEccC------------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 329 WWVPYCINVMPN------------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 329 ~v~~~~l~fspd------------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
.+. +++|+|+ +.|++|++||+.++.....+ .. .
T Consensus 14 ~v~--~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------------------------~~-~ 64 (416)
T 2pm9_A 14 RTA--TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------------------------AS-L 64 (416)
T ss_dssp ESC--BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------------------------CC-C
T ss_pred hcc--eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------------------------EE-E
Confidence 456 7788887 26889999999887643220 01 1
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC-CCEEEEEECCCcEEEE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLW 468 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vw 468 (701)
.|.. |.+++|+|++++|++|+.|+.|++|++........... ...+|...|.+++|+|+ ++++++++.||.|++|
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA---RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE---ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh---hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 4666 99999999999999999999999999973222222232 33468899999999998 8999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
|+.+..... ..-..........|...|.+++|+ +.++++++ ||.|++||+++++.+..+..+
T Consensus 142 d~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 142 DMNKCTESP--------------SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp BTTTTSSCT--------------TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred ECCCCcccc--------------ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence 885542100 000000000113688899999999 46888888 999999999999999888866
Q ss_pred ------CCCeEEEEEcCCC--eEEEEeCCC---cEEEEeCCCC-ceEEeec-CCCCCeEEEEEec-CCCEEEEEeCCCeE
Q 005342 545 ------PPIATYFILLPQD--LFAFGFDDS---SILVHCPCTK-KTKAKLK-GHQNRITCLAYSL-SLNVLVSSGADAQL 610 (701)
Q Consensus 545 ------~~~i~~l~~spdg--~l~~gs~dg---~I~iwd~~~~-~~~~~l~-~h~~~V~~v~~sp-dg~~l~s~s~D~~I 610 (701)
...+.+++|+|++ ++++++.|+ .|++||++++ ..+..+. +|...|++++|+| ++++|++++.|++|
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 7889999999997 899999999 9999999986 6778888 8999999999999 99999999999999
Q ss_pred EEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC-CEEEEE-ecCeEEEEECCCCcee
Q 005342 611 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHT 671 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg-~~l~sg-~Dg~I~iwd~~~g~~~ 671 (701)
++||+.+++.. ..+. +|. ..|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 288 ~~wd~~~~~~~--~~~~----~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 288 LLWNPESAEQL--SQFP----ARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEECSSSCCEE--EEEE----CSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEeeCCCCccc--eeec----CCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 99999997533 2222 554 889999999999 788885 8999999999887643
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.5e-33 Score=300.69 Aligned_cols=314 Identities=8% Similarity=0.027 Sum_probs=235.9
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||..+++....+..| ..+. ...|+|+ +.|+.|++||+.++.....
T Consensus 78 ~~v~i~d~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------- 134 (420)
T 3vl1_A 78 GHDFLFNTIIRDGSKMLKRA-DYTA--VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------- 134 (420)
T ss_dssp TEEEEEECCSEETTTTSCSC-CEEE--EEEECSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------
T ss_pred CcEEEEEecccceeeEEecC-CceE--EEEEecCCCEEEEEECCCCEEEEeCCCcceeee--------------------
Confidence 78999999998887777766 4344 5678888 7899999999988776655
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
+.+|.. |.+++|+|++++|++|+.|+.|++||+. .++... ...+|...|.+++|+|++++|++
T Consensus 135 ---------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s 198 (420)
T 3vl1_A 135 ---------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK----DGSNPR---TLIGHRATVTDIAIIDRGRNVLS 198 (420)
T ss_dssp ---------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCCCE---EEECCSSCEEEEEEETTTTEEEE
T ss_pred ---------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC----CCcCce---EEcCCCCcEEEEEEcCCCCEEEE
Confidence 236777 9999999999999999999999999998 443333 22358899999999999999999
Q ss_pred EECCCcEEEEecCCCCcc---cc--ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEE
Q 005342 459 LTQTATHKLWKWQSNKQS---LE--EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 530 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~---~g--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iw 530 (701)
++.||.|++||+.++... .+ .....+....|.+.....+. ..+...+.+++|+ ++++++++ ||.|++|
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH----EISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG----GGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee----ecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 999999999988655430 00 00111111111111111110 1245667777777 78899999 9999999
Q ss_pred eCCCCcEEEEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEeecC-CCCCeEEEEEecCCCEEEEEe
Q 005342 531 SLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKG-HQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 531 d~~~~~~~~~~~-~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-~~~l~~-h~~~V~~v~~spdg~~l~s~s 605 (701)
|+++++.+..+. +|...|++++|+|++ ++++|+.||.|++||+++++. +..+.+ |...|+++.+ |++++|++++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec
Confidence 999998777765 478899999999999 899999999999999998754 677777 6667777755 6788999999
Q ss_pred CCCeEEEEECCCCeeeeee---eeeeccCCCCCCCCCeEEEEEcCCCC----EEEEEecCeEEEEECCC
Q 005342 606 ADAQLCVWDAVGWKKLCSK---FLHSFQTGLVPETTIVNHIQFHPDQI----HLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 606 ~D~~I~vwd~~~g~~~~~~---~l~~~~~~~~~~~~~v~~v~~spdg~----~l~sg~Dg~I~iwd~~~ 667 (701)
.|++|++||+......... .......++. ..|.+++|+|+++ ++++|.+|.+.+|++++
T Consensus 354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 354 FDTSIKLDIISDPESERPAIEFETPTFLVSND---DAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEEEECCTTCCSCEECTTSCEEECCSS---CCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccEEEEeccCCCCCccceeccCccEEccCC---cceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999874211000 0000112343 8899999999998 56668999999999864
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-31 Score=293.31 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=244.2
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD 381 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D 381 (701)
+.|++||+.+++++..+.+|.+.|. +++|+++ +.|++|++||+.++++...+
T Consensus 139 g~i~vwd~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------- 195 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNAETGECIHTL--------------------- 195 (445)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEE--EEEecCCEEEEEeCCCeEEEEECCcCcEEEEE---------------------
Confidence 8999999999999999999999999 9999988 89999999999998877662
Q ss_pred CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
.+|.. |.+++|+ ++.+++|+.||.|++||+. .+++.. ...+|...|.++.| +++++++|+
T Consensus 196 --------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~----~~~~~~---~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 196 --------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE----TGQCLH---VLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp --------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS----SCCEEE---EEECCSSCEEEEEE--CSSCEEEEE
T ss_pred --------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC----CCcEEE---EEcCCcccEEEEEE--CCCEEEEEc
Confidence 35667 8899995 5689999999999999998 554443 22358899999998 788999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
.||.|++||+ .++..+.. + .+|...|.++++++.++++++ ||.|++||+++++.+.
T Consensus 257 ~dg~i~iwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 257 YDFMVKVWDP---------------------ETETCLHT-L-QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp TTSCEEEEEG---------------------GGTEEEEE-E-CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEC---------------------CCCcEeEE-e-cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 9999999965 44454432 2 468889999999988999999 9999999999999999
Q ss_pred EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
.+.+|...+.++.++++ ++++|+.||.|++||+++++.+..+.+ |...|++++|+ ++++++|+.||.|++||+.
T Consensus 314 ~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred EEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 99999999988887533 999999999999999999999999987 88899999995 6899999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe----EEEEECCC
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ----IDVYEAPT 667 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~----I~iwd~~~ 667 (701)
+++........ ...++. +.|++++|+|++.++++| .||+ |.|||+..
T Consensus 391 ~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTL-ESGGSG---GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEEC-TTGGGT---CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeecc-ccCCCC---ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 98644322111 112333 889999999999999997 7887 99999964
No 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=321.75 Aligned_cols=310 Identities=7% Similarity=0.014 Sum_probs=221.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
+.|++||..++++...+ .|...|. +++|+|+ +.|++|++||+.+++++..+
T Consensus 39 g~I~lw~~~~~~~~~~~-~~~~~V~--~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~-------------------- 95 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKL-EDRSAIK--EMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV-------------------- 95 (902)
T ss_dssp SEEEEECSTTCEEEEEC-SSCCCEE--EEEEETTTEEEEEETTCEEEEEETTTCSEEEEE--------------------
T ss_pred CEEEEEeCCCcEEEEEc-CCCCCEE--EEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE--------------------
Confidence 89999999888776654 4778899 9999998 78999999999998877662
Q ss_pred CCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee--------cCCCCCCCCEEEEEEec
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL--------LPDNSFGGRVVRLIYSH 451 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~--------~~~~~~~~~v~~l~~sp 451 (701)
.|.. |++++|+|+++++++|+.||.|++||+. .+.+..+. ....+|.+.|.+++|+|
T Consensus 96 ----------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~----~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 96 ----------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDID----RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp ----------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETT----TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred ----------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECC----CCccccceeccccccccccccCCCCeEEEEEcc
Confidence 2444 9999999999999999999999999997 45443221 12356889999999999
Q ss_pred C-CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC------CCeEEeecccCCCCCCeEEEEec--CCEEEEE
Q 005342 452 S-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS------SKLVMTNDIAADPKDSISCFALR--GSHLFSA 522 (701)
Q Consensus 452 d-g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~------~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~ 522 (701)
+ +..+++|+.||.+ +||+.+.... ..+... .+.... .....|...|.+++|+ |.+|+++
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~----------~~~~~~~~~g~~~~~~~~-~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIK----------QSFIYELPPFAPGGDFSE-KTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEE----------EEECCCBCTTCCCSTTCC-CTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceE----------EEEecccCCcCCCccccc-ccccccCCCeEEEEEcCCCCEEEEE
Confidence 6 4688999999999 9987543220 000000 000000 0112456789999999 8999999
Q ss_pred e-CCeEEEEeCCCCcEEEE--ec---C-------------CCCCeEEEEEc----CCC--eEEEEeCC------------
Q 005342 523 S-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LFAFGFDD------------ 565 (701)
Q Consensus 523 s-dg~I~iwd~~~~~~~~~--~~---~-------------~~~~i~~l~~s----pdg--~l~~gs~d------------ 565 (701)
+ ||.|++||+++++.+.. +. . +...|++++|+ |++ ++++|+.|
T Consensus 230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 9 99999999999887653 21 1 23468888884 554 55666433
Q ss_pred ----------------------------------------------------------------CcEEEEeCCCCceEEe
Q 005342 566 ----------------------------------------------------------------SSILVHCPCTKKTKAK 581 (701)
Q Consensus 566 ----------------------------------------------------------------g~I~iwd~~~~~~~~~ 581 (701)
|.|++||+.++.....
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~ 389 (902)
T 2oaj_A 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389 (902)
T ss_dssp EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence 3455555544422111
Q ss_pred -----------------------------------------ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 582 -----------------------------------------LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 582 -----------------------------------------l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
+.||...+.+++|+|++++||||+.|++|++||+.++..
T Consensus 390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~ 469 (902)
T 2oaj_A 390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI 469 (902)
T ss_dssp GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT
T ss_pred cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc
Confidence 223333444556678999999999999999999998742
Q ss_pred eeeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 621 LCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 621 ~~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
.....+. .+..+|. ..|++++|+|||++||+| .||+|+|||+.++
T Consensus 470 ~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred cCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 1111111 0112554 899999999999999996 7999999999876
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=293.57 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=188.3
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
.+.+.+.|. +++|+|+ +.|++|++||+.++ ..... +.+|.
T Consensus 7 ~~~~~~~v~--~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~-----------------------------~~~h~ 55 (377)
T 3dwl_C 7 LHILPKPSY--EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART-----------------------------FSDHD 55 (377)
T ss_dssp EEECSSCCS--CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC-----------------------------BCCCS
T ss_pred EecCCCcEE--EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE-----------------------------EecCC
Confidence 455677899 9999999 68999999999877 33333 34677
Q ss_pred c-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 394 Q-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 394 ~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
. |.+++|+|++++|++|+.|+.|++||+. .+. ... ......|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~----~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PDGTWKQ-TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEEEC----------CCCC-EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CCCceee-eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence 7 9999999999999999999999999998 333 111 11234588999999999999999999999999999773
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC---------------
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE--------------- 533 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~--------------- 533 (701)
.... -.+.. .+...|...|.+++|+ ++++++++ |+.|++||+.
T Consensus 131 ~~~~------------------~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 131 QEND------------------WWVSK-HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp ----------------------CCCCE-EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCS
T ss_pred Cccc------------------ceeee-EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccc
Confidence 3210 00111 1323489999999999 88999999 9999999985
Q ss_pred ---CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEe
Q 005342 534 ---TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 534 ---~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s 605 (701)
.++.+..+ +|...|++++|+|++ ++++|+.||.|++||+.+++. +..+.+|...|.+++|+|++++|++|+
T Consensus 192 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 192 RLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp CCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred ccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 35566667 899999999999999 999999999999999999987 888999999999999999999999998
Q ss_pred CCCeEEEEECC
Q 005342 606 ADAQLCVWDAV 616 (701)
Q Consensus 606 ~D~~I~vwd~~ 616 (701)
+|+.+ +|+..
T Consensus 271 ~~~~~-~~~~~ 280 (377)
T 3dwl_C 271 NYSPI-LLQGN 280 (377)
T ss_dssp SSSEE-EECCC
T ss_pred CCcEE-EEEeC
Confidence 77666 66655
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-31 Score=302.96 Aligned_cols=312 Identities=13% Similarity=0.147 Sum_probs=239.7
Q ss_pred cccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
.|.+|| +++.+..+.+|...|. +++|+|+ +.|++|++||+.+++.... +.+|..
T Consensus 143 ~v~~~d--~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~----------~~~~~~---- 204 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVSGHSQRIN--ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS----------DRTHHK---- 204 (615)
T ss_dssp EEEETT--TCCEEEECCSCSSCEE--EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE----------ECSSSC----
T ss_pred EEEEEE--CCCcceeeecCCccEE--EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee----------ecccCC----
Confidence 677887 7888999999999999 9999998 6799999999999887776 333321
Q ss_pred CCCCCCCccccCCC-ceEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-C---CCCCCEEEEEEecCC
Q 005342 380 GDDSNDSSCFNDNN-QSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-N---SFGGRVVRLIYSHSG 453 (701)
Q Consensus 380 ~D~~~~~~~l~~h~-~V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~---~~~~~v~~l~~spdg 453 (701)
.. .|.+++|+|+ ++++++++.|+.|++||+. .++... .. . .|...|.+++|+ ++
T Consensus 205 ------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~---~~~~~~~~~~~~v~~~~~~-~~ 264 (615)
T 1pgu_A 205 ------------QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEFLK---YIEDDQEPVQGGIFALSWL-DS 264 (615)
T ss_dssp ------------TTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----TCCEEE---ECCBTTBCCCSCEEEEEES-SS
T ss_pred ------------CCceEEEEEECCCCCCEEEEEeCCCeEEEEECC----CCCEeE---EecccccccCCceEEEEEc-CC
Confidence 11 2899999999 9999999999999999997 554433 22 2 588999999999 99
Q ss_pred CEEEEEECCCcEEEEecCCCCc------c--------------cccccc----ceeeEEeeCCCCeEEeeccc-------
Q 005342 454 DFLVALTQTATHKLWKWQSNKQ------S--------------LEEENV----NMESQLYQPSSKLVMTNDIA------- 502 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~------~--------------~g~~~~----~~~i~~~d~~~~~~~~~~~~------- 502 (701)
+++++++.||.+++||+.+... . .+.... ...+.+||..+++.+.. +.
T Consensus 265 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~v~ 343 (615)
T 1pgu_A 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT-ISGHNKGIT 343 (615)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE-ECCCSSCEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE-EeCCCCCEE
Confidence 9999999999999999986654 0 011111 11267777666553322 10
Q ss_pred -------------------------CCCCCCeEEEEec-CCEEEEEe-CCe-----------------------------
Q 005342 503 -------------------------ADPKDSISCFALR-GSHLFSAS-GGK----------------------------- 526 (701)
Q Consensus 503 -------------------------~~~~~~v~~l~~s-~~~l~s~s-dg~----------------------------- 526 (701)
..|...|.+++++ +..+++++ |+.
T Consensus 344 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 344 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp EEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred EEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence 1233444444444 44444444 444
Q ss_pred ---------------------------------------------EEEEeCCCCcEE-EEecCCCCCeEEEEEcCCC-eE
Q 005342 527 ---------------------------------------------ISIFSLETFQTL-ATFANPPPIATYFILLPQD-LF 559 (701)
Q Consensus 527 ---------------------------------------------I~iwd~~~~~~~-~~~~~~~~~i~~l~~spdg-~l 559 (701)
|++||+.+++.. ..+.+|...|++++|+|+| +|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 424 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred eCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 444444443333 4556788899999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEec----------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 560 AFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSL----------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 560 ~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~sp----------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
++|+.||.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.|++|++||+.++. ..+..
T Consensus 504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~ 579 (615)
T 1pgu_A 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----KIIKA 579 (615)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----CCEEE
T ss_pred EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc----eechh
Confidence 9999999999999999999999998 999999999999 99999999999999999999863 22332
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
+ .+|. ..|++++|+|+++ |+++ .||.|++|++.+
T Consensus 580 ~-~~h~---~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 580 L-NAHK---DGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp T-TSST---TCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred h-hcCc---cceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 3 3555 8999999999999 8875 899999999875
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=307.77 Aligned_cols=279 Identities=10% Similarity=-0.015 Sum_probs=206.3
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCC------CCeEEEEcCC
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPD------ADSAVCAKSL 413 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spd------g~~l~s~s~d 413 (701)
+.|++|+|||+.++++.... ...+.+|.. |+.++|+|+ +.+||+|+.|
T Consensus 180 s~D~tI~iWd~~~~~~~~~~-------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D 234 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVK-------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE 234 (524)
T ss_dssp --CEEEEEEEEETTTCCEEE-------------------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT
T ss_pred CCCceEEEEEccCCCCCceE-------------------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC
Confidence 46889999999877643210 111345666 999999997 5799999999
Q ss_pred CcEEEEeccccCCCC-ceeEee---cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEe
Q 005342 414 EKSVNLKLQLINEPS-ECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY 489 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~-~~~~l~---~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~ 489 (701)
|+|++||+....... ....+. ....+|...|.+++|+|++ .|++|+.||+|++||++++.
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~--------------- 298 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE--------------- 298 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---------------
T ss_pred CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---------------
Confidence 999999997322110 000000 1224588999999999865 79999999999999774321
Q ss_pred eCCCCeEEeecccCCCCCCeEEE--Eec--C-CEEEEEe-CCeEEEEeCCCCcEEEEecCCCC--CeEEEEEcCCC-eEE
Q 005342 490 QPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFA 560 (701)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~v~~l--~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~spdg-~l~ 560 (701)
..... + .+|...|.++ +++ | .+|++++ |++|++||+++++....+.+|.. .|.+++|+|++ .++
T Consensus 299 -----~~~~~-~-~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 299 -----VPSFY-D-QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp -----SCSEE-E-ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred -----CceEE-e-ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence 11110 2 4789999999 456 5 7899999 99999999998887776666543 57899999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee---------eeeecc-
Q 005342 561 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK---------FLHSFQ- 630 (701)
Q Consensus 561 ~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~---------~l~~~~- 630 (701)
+++.|++|++||++++..+..+.+|.+.|++++|+|+|++|++|+.|++|++||+..+...... .+..+.
T Consensus 372 s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEecc
Confidence 9999999999999999988889999999999999999999999999999999997542100000 000000
Q ss_pred --------------------CCC-----CCCCCCeEEEEEcCCCC---EEEEE-ecCeEEEEECCC
Q 005342 631 --------------------TGL-----VPETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 631 --------------------~~~-----~~~~~~v~~v~~spdg~---~l~sg-~Dg~I~iwd~~~ 667 (701)
.+. .++...|++|+|+|++. ++|+| .||.|+||++.-
T Consensus 452 sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 452 SIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 000 02338899999999964 89988 689999999853
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-31 Score=287.37 Aligned_cols=274 Identities=15% Similarity=0.195 Sum_probs=221.9
Q ss_pred EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342 334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA 407 (701)
Q Consensus 334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l 407 (701)
++.||++ +.|++|+|||+.+|++... +.. .+|.. |++++|+|+|++|
T Consensus 110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~----------~~~-----------------~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQL----------LQM-----------------EQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEE----------EEC-----------------CSTTCCEEEEEECTTSSEE
T ss_pred eEEECCCCEEEEEeCCEEEEEECCCCCEEEE----------EEe-----------------cCCCCcEEEEEECCCCCEE
Confidence 7888877 7799999999999988776 222 36777 9999999999999
Q ss_pred EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
|+|+.||.|++||+. ++++.. ...+|...+.++.+ ++..+++|+.|+.+.+||....
T Consensus 163 asgs~Dg~v~iWd~~----~~~~~~---~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~-------------- 219 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQ----QQKRLR---NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-------------- 219 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--------------
T ss_pred EEEECCCeEEEEEcC----CCcEEE---EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc--------------
Confidence 999999999999998 565544 33468889988776 4779999999999999976321
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc----EEEEecCCCCCeEEEEEcCCC--e
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--L 558 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~spdg--~ 558 (701)
...... + .+|...+..+.++ +.++++++ |+.+++||..+++ .+.....|...|.+++|+|++ .
T Consensus 220 -----~~~~~~--~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 220 -----EHHVAT--L-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp -----SCEEEE--E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred -----ceeeEE--e-cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 111111 2 4788999999999 89999999 9999999998765 356677789999999999988 5
Q ss_pred EEE--EeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342 559 FAF--GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (701)
Q Consensus 559 l~~--gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~~~~~~~ 634 (701)
+++ |+.|++|++||+.+++....+..| ..+.++.|+|+++.+++++ .|++|+|||+.+++++ ..+. +|.
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v--~~l~----gH~ 364 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--AELK----GHT 364 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--EEEC----CCS
T ss_pred EEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE--EEEc----CCC
Confidence 555 458999999999999999988855 5689999999999888765 7999999999997633 2233 676
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
..|++++|+|||++|++| .|++|+|||+......+...
T Consensus 365 ---~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 365 ---SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp ---SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred ---CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 899999999999999996 89999999997766554443
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-30 Score=284.69 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=247.5
Q ss_pred cccCccceeEEEeecCcce-eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCC
Q 005342 312 PSMDKSRLLSLIKQIMDWW-VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSND 385 (701)
Q Consensus 312 wd~~~~~~~~~l~~h~~~v-~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~ 385 (701)
|.....+....+.+|.+.+ . |+.++.+ +.|++|++||+.+++.+.. +
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~--~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~----------~--------------- 155 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT----------L--------------- 155 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEE----------C---------------
T ss_pred ccCCCcceeEEecccCCCcEE--EEEEcCCEEEEEECCCcEEEEECCCCcEEEE----------E---------------
Confidence 4444445667889999875 5 7888777 8999999999999887766 2
Q ss_pred CccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 386 SSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 386 ~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
.+|.. |++++|+ ++++++|+.||.|++||+. ++++.. ...+|...|.++.|+ ++.+++|+.||.
T Consensus 156 ----~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 220 (445)
T 2ovr_B 156 ----VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE----TGECIH---TLYGHTSTVRCMHLH--EKRVVSGSRDAT 220 (445)
T ss_dssp ----CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT----TTEEEE---EECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred ----cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC----cCcEEE---EECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence 36677 9999998 5699999999999999998 555444 334688999999996 567999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
|++||+ .+++.+.. + .+|...|.+++++++++++++ ||.|++||+++++.+..+.+
T Consensus 221 i~~wd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 221 LRVWDI---------------------ETGQCLHV-L-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp EEEEES---------------------SSCCEEEE-E-ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred EEEEEC---------------------CCCcEEEE-E-cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 999965 44444332 2 368899999999988899998 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 544 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
|...|.++++ ++ .+++|+.||.|++||+++++.+..+.+|...+.++.+ +++++++|+.||.|++||+.+++..
T Consensus 278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~- 352 (445)
T 2ovr_B 278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL- 352 (445)
T ss_dssp CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-
T ss_pred CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-
Confidence 9999999999 67 9999999999999999999999999999999988877 4679999999999999999997533
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee-----e----eeEEEEEeeEEe
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL-----L----ISHIMFVQIVVK 688 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~-----~----i~~~~fs~~~~~ 688 (701)
..+. ....|. ..|++++|+ ++++++| .||.|++||+.+++.+..+. + |++++|+|....
T Consensus 353 -~~~~-~~~~~~---~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 353 -QTLQ-GPNKHQ---SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp -EEEC-STTSCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred -EEEc-cCCCCC---CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence 2232 111244 889999996 5788886 79999999999999998882 2 999999987543
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.1e-32 Score=287.92 Aligned_cols=287 Identities=10% Similarity=0.071 Sum_probs=211.0
Q ss_pred CcceeeeEEEEccC-------C-------CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 327 MDWWVPYCINVMPN-------A-------NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s-------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
+-+|. +++|+|| + .++.|++|++..+...... .+..+ ....|.+|
T Consensus 14 g~PV~--sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--------~~~~~-----------~~~~l~~~ 72 (365)
T 4h5i_A 14 GYPAY--GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--------QFHIL-----------SEFALEDN 72 (365)
T ss_dssp SSCEE--EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--------HEEEE-----------EEEECCTT
T ss_pred CCCEE--EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee--------eeeee-----------eEEEccCC
Confidence 34688 9999999 2 2457999999876543220 00000 00115567
Q ss_pred Cc-eEEEEEcCCCCeEEEE-----------cCCCcEEEEeccccCCCCceeE-ee-cCCCCCCCCEEEEEEecCCCEEEE
Q 005342 393 NQ-SRESTSLPDADSAVCA-----------KSLEKSVNLKLQLINEPSECRT-LL-LPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 393 ~~-V~~l~~spdg~~l~s~-----------s~d~~v~iw~~~~~~~~~~~~~-l~-~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
.. |.+++++ ++.+++| +.|+.+++|++........... .. .....+...+.+++|||||+++++
T Consensus 73 ~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~ 150 (365)
T 4h5i_A 73 DDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI 150 (365)
T ss_dssp SCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred CCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE
Confidence 77 7777654 4466554 4678899999863221111111 11 112234567899999999999876
Q ss_pred EE--CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCC
Q 005342 459 LT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET 534 (701)
Q Consensus 459 ~s--~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~ 534 (701)
++ .|++|++||+ .+++.+.. + .|...|.+++|+ |+++++++++.+.+|+..+
T Consensus 151 as~~~d~~i~iwd~---------------------~~~~~~~~-~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~ 206 (365)
T 4h5i_A 151 ASSKVPAIMRIIDP---------------------SDLTEKFE-I--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVT 206 (365)
T ss_dssp EESCSSCEEEEEET---------------------TTTEEEEE-E--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTT
T ss_pred EECCCCCEEEEeEC---------------------CCCcEEEE-e--CCCCceEEEEEccCCceEEeccceeEEEEEecc
Confidence 55 5899999955 55665432 2 367789999999 8899999977788888878
Q ss_pred CcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEE
Q 005342 535 FQTLAT--FANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 535 ~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~dg----~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
+..+.. ..+|...+.+++|+|++ .+++++.|+ .+++||+..... ...+.+|...|++++|+|||++||+
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 776543 34577889999999999 999998887 688899876543 4567789999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCC
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g 668 (701)
|+.|++|+|||+.+++ .+..+..+|. ..|++++|||||++||++ .|++|+|||+...
T Consensus 287 gs~D~~V~iwd~~~~~-----~~~~~~~gH~---~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLS-----MSKIFKQAHS---FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTTTE-----EEEEETTSSS---SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCCCc-----EEEEecCccc---CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999975 3333455776 999999999999999996 8999999999643
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=293.57 Aligned_cols=295 Identities=13% Similarity=0.138 Sum_probs=228.8
Q ss_pred ccccCccceeEEE-eecCcceeeeEEEEcc-C-------CCCCeEEEEeccC---CccccccccccCCCCCCCCCCcccc
Q 005342 311 FPSMDKSRLLSLI-KQIMDWWVPYCINVMP-N-------ANNETISLKDFPT---VSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 311 iwd~~~~~~~~~l-~~h~~~v~~~~l~fsp-d-------s~d~~i~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
.|+ .+++++..+ .+|.+.|. +++|+| + +.|++|++||+.+ +.....
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~--~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~------------------- 104 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSIT--SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS------------------- 104 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEE--EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-------------------
T ss_pred ccc-ccceEEeeeccCCCCceE--EEEECCCCCCEEEEecCCceEEEeECcccccCcccce-------------------
Confidence 587 678888888 89999999 999999 6 8999999999977 332111
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCce---------eEeecCCCCCCCCEEEEE
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---------RTLLLPDNSFGGRVVRLI 448 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~---------~~l~~~~~~~~~~v~~l~ 448 (701)
....+|.. |.+++|+|++++|++|+.||.|++||+.... .+++ ..+.+...++...+.++.
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ-QESEVKFLNCECIRKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE-ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc-CCceeeccccceeEEEEccCcccccCceEEE
Confidence 01125777 9999999999999999999999999994110 1111 111111111567788888
Q ss_pred --EecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec--CCEEEEEe
Q 005342 449 --YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR--GSHLFSAS 523 (701)
Q Consensus 449 --~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s--~~~l~s~s 523 (701)
++|++.++++|+.||.|++||+ .+++.+.. +.. .|...|++++|+ +.++++|+
T Consensus 176 ~~~~~~~~~l~~~~~d~~i~iwd~---------------------~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 176 AFVNEEKSLLVALTNLSRVIIFDI---------------------RTLERLQI-IENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEECSSCEEEEEEETTSEEEEEET---------------------TTCCEEEE-EECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeC---------------------CCCeeeEE-EccCCCCCceEEEEECCCCCEEEEEc
Confidence 5689999999999999999965 44454432 221 278899999999 88999999
Q ss_pred -CCeEEEEeCCCCcEEEEec-CCCCCeEEEEEc----CCC-eEEEEeCCCcEEEEeCCCCceEEeecC------------
Q 005342 524 -GGKISIFSLETFQTLATFA-NPPPIATYFILL----PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------------ 584 (701)
Q Consensus 524 -dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s----pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~------------ 584 (701)
||.|++||+++++.+..+. +|...|++++++ |++ ++++|+.||.|++||+++++.+..+.+
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 9999999999999998886 677899999665 467 999999999999999999988877764
Q ss_pred --------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee----------------------
Q 005342 585 --------------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---------------------- 628 (701)
Q Consensus 585 --------------h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~---------------------- 628 (701)
|...|++++|+ ++++|++|+.|+.|++||+.+++... .+..
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK--AVISPSRFSDVFIPTQVTANLTMLLR 390 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE--EEECC--CCCEEEEEEEETTEEEEEE
T ss_pred cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce--EEecccccCceEEEEEeecceEEEEE
Confidence 44568889999 77899999999999999999876432 1110
Q ss_pred -----------ccCCCCCCCCCeEEEEEcCC--CCEEEEE-ecCeEEEEE
Q 005342 629 -----------FQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQIDVYE 664 (701)
Q Consensus 629 -----------~~~~~~~~~~~v~~v~~spd--g~~l~sg-~Dg~I~iwd 664 (701)
....|. ..|++++|+++ +.+|++| .||.|+||+
T Consensus 391 ~~~~~~~~~~~~~~~h~---~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 KMKRTSTHSVDDSLYHH---DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC-------------C---CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccccccCcccccc---cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 001144 89999999998 7788886 799999995
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-31 Score=305.04 Aligned_cols=251 Identities=16% Similarity=0.211 Sum_probs=211.1
Q ss_pred ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 465 (701)
+.+|.. |++++|+|++ ++|+||+.|++|++|++...... +.+.. ...+|...|.+++|+|+|++|++|+.||.|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR---RLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE---EEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc---eecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 779999 9999999875 79999999999999999742211 12222 234689999999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF- 541 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~- 541 (701)
++||+ .++..... + .+|...|.+++|+ +++|++++ |++|++||..........
T Consensus 455 ~vwd~---------------------~~~~~~~~-~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 455 RLWDL---------------------AAGVSTRR-F-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp EEEET---------------------TTTEEEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EEEEC---------------------CCCcceeE-E-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 99965 45554432 2 4799999999999 88999999 999999998654433322
Q ss_pred --cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 542 --ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 542 --~~~~~~i~~l~~spdg---~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
.+|...|.+++|+|++ .+++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.|++|++||+.
T Consensus 512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 3678889999999987 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
+++.. ..+. ++ ..|.+++|+|++.+++++.|+.|+|||+.+++.+..+.
T Consensus 592 ~~~~~-----~~~~-~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 592 EGKKL-----YSLE-AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp TTEEE-----ECCB-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred CCceE-----EEec-CC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence 98533 2122 33 77999999999999999989999999999999887664
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.1e-32 Score=282.71 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=194.0
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i 465 (701)
+.+|.. |++++|+|+|++||+|+.|++|++||+. .+....+. .+.+|...|.+++|+| ++++|++|+.|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~----~~~~~~~~-~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR----NGGQILIA-DLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec----CCCcEEEE-EEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 568999 9999999999999999999999999997 44321111 2346899999999986 48999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcE---
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT--- 537 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~--- 537 (701)
++||+.++. ...... + .+|...|.+++|+ +.+|++++ |+.|++||++++..
T Consensus 84 ~iWd~~~~~-------------------~~~~~~-~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 84 IIWREENGT-------------------WEKSHE-H-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCSSSC-------------------CCEEEE-E-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEEECCCCc-------------------ceEEEE-c-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 999763210 011111 2 4788999999998 46899999 99999999987632
Q ss_pred EEEecCCCCCeEEEEEcCC-----------------C-eEEEEeCCCcEEEEeCCCC---ceEEeecCCCCCeEEEEEec
Q 005342 538 LATFANPPPIATYFILLPQ-----------------D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spd-----------------g-~l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~v~~sp 596 (701)
...+.+|...+.+++|+|+ + ++++|+.|+.|++||++++ +.+..+.+|...|++++|+|
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp 222 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP 222 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence 3456678889999999997 5 8999999999999999755 46778899999999999999
Q ss_pred CC----CEEEEEeCCCeEEEEECCCCee--eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 597 SL----NVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 597 dg----~~l~s~s~D~~I~vwd~~~g~~--~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
++ ++||+|+.|++|++||+.++.. .....+. +|. ..|++++|+|+|++|+++ .|++|++|+..
T Consensus 223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~----~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH----KFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE----ECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh----cCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 86 7999999999999999987311 0111222 344 889999999999999985 89999999985
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.2e-31 Score=310.27 Aligned_cols=314 Identities=11% Similarity=0.090 Sum_probs=254.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|++||+.+++.+..+.+|.+.|. +++|+|+ +.|+.|++||+.+++....+
T Consensus 35 g~v~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------------------- 93 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVTETPVR--AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------- 93 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEE--EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred CEEEEEECCCCceEEEEecCCCcEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------
Confidence 7899999999999999999999999 9999999 78999999999998876662
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEec-CCCEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSH-SGDFL 456 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~sp-dg~~l 456 (701)
.+|.. |++++|+|++++|++|+.||.|++|++. .+ .+.. ...+|...|.+++|+| ++..+
T Consensus 94 ----------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~----~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 94 ----------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQ---TFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp ----------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG----GTSEEEE---EEECCSSCEEEEEEETTEEEEE
T ss_pred ----------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC----CCceEEE---EEcCCCCcEEEEEEEcCCCCEE
Confidence 36777 9999999999999999999999999997 33 3222 2235789999999999 89999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEe
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFS 531 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd 531 (701)
++++.||.|++||+.. +..... +...+...+.+++|+ +.++++++ ||.|++||
T Consensus 157 ~~~~~dg~v~vwd~~~---------------------~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQ---------------------STPNFT-LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp EEEETTSEEEEEETTC---------------------SSCSEE-EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred EEEeCCCeEEEEECCC---------------------CcceeE-EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999999997633 221111 223455788999996 77899998 99999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC--EEEEEeCCC
Q 005342 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN--VLVSSGADA 608 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~--~l~s~s~D~ 608 (701)
+.+++.+..+.+|...|.+++|+|++ ++++|+.||.|++||+.+++.+..+..|...+.+++|+|++. ++++++ |+
T Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~ 293 (814)
T 3mkq_A 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DN 293 (814)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TT
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999987 455555 67
Q ss_pred eEEEEECCCCeeeeee-----eee--------------------------------eccCCCCCCCCCeEEEEEcCCCCE
Q 005342 609 QLCVWDAVGWKKLCSK-----FLH--------------------------------SFQTGLVPETTIVNHIQFHPDQIH 651 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~-----~l~--------------------------------~~~~~~~~~~~~v~~v~~spdg~~ 651 (701)
.+.+|++..+...... .+. ....++ ...+.+++|+|+|++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~ 370 (814)
T 3mkq_A 294 GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV---DVFPQSLAHSPNGRF 370 (814)
T ss_dssp EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC---SSCCSEEEECTTSSE
T ss_pred CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC---ccCCceeEECCCCCE
Confidence 7889987654211100 000 000111 256789999999999
Q ss_pred EEEEecCeEEEEECCCCceeeeeee-eeEEEEEeeE
Q 005342 652 LLSIHEGQIDVYEAPTLNHTSQVLL-ISHIMFVQIV 686 (701)
Q Consensus 652 l~sg~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs~~~ 686 (701)
++++.|+.+.+|++....... .+ +++++|+|+.
T Consensus 371 la~~~~~~~~i~~~~~~~~~~--~~~i~~~~~spdg 404 (814)
T 3mkq_A 371 VTVVGDGEYVIYTALAWRNKA--FGKCQDFVWGPDS 404 (814)
T ss_dssp EEEEETTEEEEEETTTTEEEE--EEECSEEEECTTS
T ss_pred EEEecCCEEEEEECccccccC--CCceEEEEEeCCC
Confidence 999889999999986543322 23 8888888754
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.8e-31 Score=308.33 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=242.1
Q ss_pred ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 318 RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 318 ~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
+..+.+.+|.+.|. +++|+|+ +.||+|+|||+.++.....+ .
T Consensus 4 ~~~~~~~~h~~~v~--~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-----------------------------~ 52 (814)
T 3mkq_A 4 DIKKTFSNRSDRVK--GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-----------------------------Q 52 (814)
T ss_dssp CCEEEEEEECSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------E
T ss_pred ccceeeecCCCceE--EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-----------------------------e
Confidence 45678899999999 9999999 77999999999998776662 3
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
+|.. |.+++|+|+|++|++|+.||.|++|++. +++... ...+|...|.+++|+|+|+++++++.||.|++||
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~----~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVV---DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT----TCCEEE---EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEE---EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 5667 9999999999999999999999999998 554433 2235889999999999999999999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCC-eEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP 544 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~ 544 (701)
+. ++ ..... + .+|...|.+++|+ ++.+++++ ||.|++||+.++.....+..+
T Consensus 126 ~~---------------------~~~~~~~~-~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 126 WE---------------------NNWALEQT-F-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp GG---------------------GTSEEEEE-E-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred CC---------------------CCceEEEE-E-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence 63 22 22221 2 3688899999998 66889998 999999999988877777655
Q ss_pred C-CCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 545 P-PIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 545 ~-~~i~~l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
. ..+.+++|+| ++ ++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.||.|++||+.+++.
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 4 8899999999 88 999999999999999999999999999999999999999999999999999999999999753
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCC--EEEEEecCeEEEEECCCCceeeee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~--~l~sg~Dg~I~iwd~~~g~~~~~l 674 (701)
.. . +. .+. ..+.+++|+|+|+ +++++.|+.+.+|++.++.....+
T Consensus 263 ~~--~---~~-~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (814)
T 3mkq_A 263 EK--T---LN-VGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSL 309 (814)
T ss_dssp EE--E---EC-CSS---SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEE
T ss_pred EE--E---ee-cCC---CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEE
Confidence 32 2 22 333 7899999999987 577788999999998766544433
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=270.14 Aligned_cols=268 Identities=14% Similarity=0.177 Sum_probs=215.9
Q ss_pred EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342 334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA 407 (701)
Q Consensus 334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l 407 (701)
+|+|||+ +.|++|+|||+.+|+++.. +.. .+|.. |.+++|+|+|++|
T Consensus 30 ~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~----------~~~-----------------~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 30 LVDWSSGNVLAVALDNSVYLWSASSGDILQL----------LQM-----------------EQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEE----------EEC-----------------CSTTCCEEEEEECTTSSEE
T ss_pred EEEECCCCEEEEEeCCEEEEEECCCCCEEEE----------EEe-----------------cCCCCeEEEEEECCCCCEE
Confidence 8999998 7799999999999998876 322 36777 9999999999999
Q ss_pred EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeE
Q 005342 408 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 408 ~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
++|+.||+|++|++. ++++.. ...+|...+.++ ++++..+++++.++.+.+|+....
T Consensus 83 ~sgs~Dg~v~iw~~~----~~~~~~---~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~-------------- 139 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQ----QQKRLR---NMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVA-------------- 139 (318)
T ss_dssp EEEETTSEEEEEETT----TTEEEE---EEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSS--------------
T ss_pred EEEECCCcEEEeecC----CceeEE---EecCccceEEEe--ecCCCEEEEEecCCceEeeecCCC--------------
Confidence 999999999999998 665544 223577777664 556789999999999999965221
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE----EEEecCCCCCeEEEEEcCCC--e
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPIATYFILLPQD--L 558 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~spdg--~ 558 (701)
...+.. + .+|...+.++.++ ++++++++ ||.|++||+++++. ......+...|.+++++|++ .
T Consensus 140 ------~~~~~~-~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 140 ------EHHVAT-L-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp ------SCEEEE-E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred ------ceeEEE-E-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence 112211 2 3788899999999 88999999 99999999988753 34555678899999999987 3
Q ss_pred --EEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342 559 --FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (701)
Q Consensus 559 --l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~~~~~~~ 634 (701)
+++++.++.|++||........... |...+..+.|+|+++.+++++ .|+.|++||+.+++++ ..+. +|.
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~--~~l~----gH~ 284 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV--AELK----GHT 284 (318)
T ss_dssp EEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--EEEC----CCS
T ss_pred EEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE--EEEc----CCC
Confidence 3567788999999999887776654 667899999999999887655 7999999999998643 2233 666
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 635 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 635 ~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
..|++++|+|||++|++| .||+|+|||+....
T Consensus 285 ---~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 285 ---SRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ---SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ---CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 899999999999999996 89999999997654
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=274.65 Aligned_cols=257 Identities=12% Similarity=0.091 Sum_probs=219.7
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |.+++|+|+|++|++|+.||.|++||+. .++... ...+|...|.+++|+|++++|++++.||.|++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL----NGERLG---TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT----TCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC----Cchhhh---hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 789999 9999999999999999999999999997 554444 23468899999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-----CeEEEEeCCCCc---
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ--- 536 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-----g~I~iwd~~~~~--- 536 (701)
||+ .+++.+.. + .+...|.+++|+ +.++++++ + |.|++||+.++.
T Consensus 101 wd~---------------------~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 101 WDV---------------------SNGQCVAT-W--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EET---------------------TTCCEEEE-E--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEC---------------------CCCcEEEE-e--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 965 45554432 2 267889999999 88898888 7 999999987653
Q ss_pred --------EEEEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCCEEEEE
Q 005342 537 --------TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 537 --------~~~~~~~~~~--~i~~l~~spdg-~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~~l~s~ 604 (701)
....+..+.. .+.+++|+|++ .+++|+.||.|++||+++ ++.+..+.+|...|.+++|+|++++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 3344445555 89999999999 999999999999999998 78889999999999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC--------------eEEEEECCCCc
Q 005342 605 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLN 669 (701)
Q Consensus 605 s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg--------------~I~iwd~~~g~ 669 (701)
+.|+.|++||+.+++.... +. +. ..+.+++|+|++++++++ .++ .+++||..+++
T Consensus 237 ~~d~~i~v~d~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKK--YE----TD----CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp ETTSEEEEEETTTCCEEEE--EE----CS----SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred cCCceEEEEECCCCceeee--ec----CC----CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 9999999999999764322 22 22 789999999999999986 566 89999999999
Q ss_pred eeeeeee----eeEEEEEeeE
Q 005342 670 HTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 670 ~~~~l~~----i~~~~fs~~~ 686 (701)
.+..+.+ |++++|+|+.
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTS
T ss_pred chhheecccCcEEEEEECCCC
Confidence 9999887 9999999864
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.2e-30 Score=281.45 Aligned_cols=289 Identities=15% Similarity=0.110 Sum_probs=233.1
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
+.|++||+.+++++..+.+|.+.|. +++|+|+ +.|++|++||+.++++...+
T Consensus 142 g~i~vwd~~~~~~~~~~~~h~~~V~--~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------------------- 199 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF-------------------- 199 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEE--EEEECSTTEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred CcEEEEECCCCcEEEEEeCCCcCEE--EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEE--------------------
Confidence 8999999999999999999999999 9999998 89999999999998877662
Q ss_pred CCCCCCccccCCCc-eEEEEEc--CCCCeEEEEcCCCcEEEEeccccCCCCceeE----------------eecCCCCCC
Q 005342 381 DDSNDSSCFNDNNQ-SRESTSL--PDADSAVCAKSLEKSVNLKLQLINEPSECRT----------------LLLPDNSFG 441 (701)
Q Consensus 381 D~~~~~~~l~~h~~-V~~l~~s--pdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~----------------l~~~~~~~~ 441 (701)
.+|.. |.+++|+ |++.++++|+.|+.|++||+........... +.....+|.
T Consensus 200 ---------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 200 ---------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp ---------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred ---------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 35667 9999998 6889999999999999999974321110000 000123577
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l 519 (701)
..|.++ +++++++++|+.||.|++||+ .+++.+.. + .+|...|.+++|+ ++++
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDV---------------------AQMKCLYI-L-SGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEET---------------------TTTEEEEE-E-CCCSSCEEEEEEETTTTEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEEC---------------------CCCcEEEE-e-cCCCCCEEEEEEcCCCCEE
Confidence 777776 688999999999999999965 55554432 2 4788999999999 8899
Q ss_pred EEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC
Q 005342 520 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 598 (701)
Q Consensus 520 ~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg 598 (701)
++|+ ||.|++||+++++.+..+.+|...|.++++++. ++++|+.||.|++||+.++....... |...+..++|+|++
T Consensus 326 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD 403 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence 9999 999999999999999999999999999999733 99999999999999999987766654 66778889999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEE
Q 005342 599 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 663 (701)
Q Consensus 599 ~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iw 663 (701)
+++++|+ |+.|++||+.+|+.+ .....+|. ..|++++|+ ++.+++++ .||.+.+|
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~~~-----~~~~~~~~---~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGKLV-----HANILKDA---DQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEE-----ESCTTTTC---SEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CEEEEec-CCeEEEEECCCCcEE-----ehhhccCC---CcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9999999 899999999998633 22223444 899999997 33444444 67665444
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-30 Score=266.08 Aligned_cols=256 Identities=11% Similarity=0.080 Sum_probs=215.9
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
+.+|.. |.+++| |++++|++|+.||.|++||+. .+..... ...|...|.+++|+|+++++++++.||.+++
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~----~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD----DQWLGTV---VYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES----SSEEEEE---EEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC----CCEEEEE---eecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 678998 999999 999999999999999999997 4544332 2247899999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
|++.. ...+..... + .+|...|.+++|+++++++++ ||.|++|| .++....+..|..
T Consensus 86 ~~~~~------------------~~~~~~~~~-~-~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 86 VPLFA------------------TSGEDPLYT-L-IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp EETTC------------------CTTSCC-CE-E-CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred EEeee------------------cCCCCcccc-h-hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 98733 233332221 2 478899999999988999999 99999999 6778888889999
Q ss_pred CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 547 IATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 547 ~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
.+.+++++| ++ .+++++.||.|++|| .++....+.. |...|.+++|+|++. +++++.|+.|++||+++++..
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-- 218 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-- 218 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE--
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh--
Confidence 999999998 77 999999999999999 5566777777 899999999999998 899999999999999997533
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~ 686 (701)
..+. +|. ..|++++|+|++.+++.+.||.|++||+.+++.+..+.. |++++|+|..
T Consensus 219 ~~~~----~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 219 RTYE----GHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG 278 (313)
T ss_dssp EEEE----CCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred hhhh----cCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC
Confidence 2222 454 899999999999644445899999999999999998877 9999998864
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=2e-30 Score=278.55 Aligned_cols=312 Identities=10% Similarity=0.048 Sum_probs=234.0
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEcc-C-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMP-N-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fsp-d-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
..+++|+.++++....+.+|.+.|. +++|+| + +.|++|++||+.++.....+ ........
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~ 90 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGIN--TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY----------TCKAVCSI 90 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEE--EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE----------EECEEEEE
T ss_pred CcceeeccccCcceeeeeccCCcEE--EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE----------eccccccc
Confidence 6789999999999999999999999 999999 6 78999999999988766552 10000000
Q ss_pred cCCCCCCCccccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCC---
Q 005342 379 SGDDSNDSSCFNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--- 453 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg--- 453 (701)
......+|.. |.+++|+| ++.+|++++.|+.|++||+. .++..... .+...+.++.|+|.+
T Consensus 91 ------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 91 ------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN----TLQTADVF----NFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp ------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT----TTEEEEEE----ECSSCEEEEEECSSCSSC
T ss_pred ------cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC----CCccceec----cCCCceeeeEeecCCCCC
Confidence 0111346888 99999999 78899999999999999998 55443322 156789999999854
Q ss_pred CEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEE
Q 005342 454 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISI 529 (701)
Q Consensus 454 ~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~i 529 (701)
.++++++.||.+++||+ .++..+.. + ..|...|.+++|+ +. .+++++ ||.|++
T Consensus 157 ~~~~~~~~~~~v~~~d~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDL---------------------KSGSCSHI-L-QGHRQEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp CEEEEEESSSSEEEEES---------------------SSSCCCEE-E-CCCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cEEEEEcCCCeEEEEeC---------------------CCcceeee-e-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 49999999999999976 33333221 2 4688999999999 55 588888 999999
Q ss_pred EeCCCCc-EEEEe---------------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----C
Q 005342 530 FSLETFQ-TLATF---------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----N 587 (701)
Q Consensus 530 wd~~~~~-~~~~~---------------~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~ 587 (701)
||++++. .+..+ .+|...|.+++|+|++ ++++++.||.|++||+.+++....+.++. .
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence 9998765 44444 4678899999999999 99999999999999999987765554321 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECC
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~ 666 (701)
.+........+..+++++.|+.|++||+.+++... . +. +|. ..|++++|+|++++|+++ .||.|++||+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~---~~-~~~---~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT--M---LK-GHY---KTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE--E---EC-CCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCCccee--e---ec-cCC---CeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 22222222345567777889999999999975332 2 22 555 899999999999999996 79999999999
Q ss_pred CCceeeeeee
Q 005342 667 TLNHTSQVLL 676 (701)
Q Consensus 667 ~g~~~~~l~~ 676 (701)
+++.+.....
T Consensus 365 ~~~~~~~~~~ 374 (408)
T 4a11_B 365 LYEPVPDDDE 374 (408)
T ss_dssp C---------
T ss_pred CCCccCCCCc
Confidence 9988776554
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=2.8e-31 Score=289.36 Aligned_cols=268 Identities=12% Similarity=0.128 Sum_probs=203.4
Q ss_pred ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i 465 (701)
..+|.. |++++|+| ++++||+|+.||.|+|||+. .+.... .....+|.+.|.+++|+| ++.+|++|+.||+|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~----~~~~~~-~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG----IKDKPT-FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSS----CCSCCE-EECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC----CCCcee-EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 347888 99999999 56799999999999999997 333222 124457999999999998 68899999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
++||+++ +.+........+...+.+++|+ +.+|++|+ ||.|++||++ ++.+..+.
T Consensus 190 ~iwd~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~ 247 (435)
T 4e54_B 190 RLQDFKG---------------------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR 247 (435)
T ss_dssp EEEETTS---------------------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB
T ss_pred EEeeccC---------------------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe
Confidence 9997633 3222111112344567889998 88999999 9999999995 56677888
Q ss_pred CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe---ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 543 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 543 ~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~---l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
+|...|++++|+|++ ++++|+.|+.|++||+++++.... ..+|...|++++|+|+|++|++++.||+|++||+.+
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 999999999999998 888999999999999988765433 356999999999999999999999999999999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-------------ecCeEEEEECCCCceeeeeee-----eeE
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQVLL-----ISH 679 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-------------~Dg~I~iwd~~~g~~~~~l~~-----i~~ 679 (701)
++.......+....... ..+....|+|++..++++ .++.|++||..+|+.+.++.. |.+
T Consensus 328 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404 (435)
T ss_dssp SSSEEEECCCCCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC
T ss_pred CccceEEeccccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE
Confidence 76432111110000000 223345566666665553 235799999999999988764 666
Q ss_pred E-EEEeeE
Q 005342 680 I-MFVQIV 686 (701)
Q Consensus 680 ~-~fs~~~ 686 (701)
+ +|+|+.
T Consensus 405 ~~~fspdg 412 (435)
T 4e54_B 405 LNEFNPMG 412 (435)
T ss_dssp EEEECTTS
T ss_pred EEEECCCC
Confidence 6 588753
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-30 Score=274.76 Aligned_cols=254 Identities=14% Similarity=0.150 Sum_probs=206.2
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~ 464 (701)
.+.+|.. |.+++|+|++++|++|+.||.|++|++. .+....+. ...+|...|.+++|+|+ +++|++++.||.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~----~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecC----CCcceeee-EecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4678999 9999999999999999999999999996 22222211 33468999999999987 999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc-
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ- 536 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~- 536 (701)
|++||+ .++. ... ....|...|.+++|+ +.++++++ ||.|++||+.++.
T Consensus 81 v~iwd~---------------------~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 81 VLIWKE---------------------ENGRWSQIA--VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEEEEE---------------------ETTEEEEEE--EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EEEEEc---------------------CCCceeEee--eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 999976 3333 222 124688999999999 46889998 9999999998873
Q ss_pred -EEEEecCCCCCeEEEEEcC-------------CC-eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecC
Q 005342 537 -TLATFANPPPIATYFILLP-------------QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 537 -~~~~~~~~~~~i~~l~~sp-------------dg-~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spd 597 (701)
....+.+|...|.+++|+| ++ ++++|+.||.|++||++++. .+..+.+|...|.+++|+|+
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 4456678999999999999 68 99999999999999998764 55678889999999999999
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342 598 ---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 598 ---g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~ 673 (701)
+++|++++.||.|++||+.++.......+. ....|. ..|++++|+|+|++|+++ .||.|++|++.++.....
T Consensus 218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL-KEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEES-SSSCCS---SCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred CCCCCeEEEEeCCCEEEEEeCCCCCccceeeee-ccccCC---CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 899999999999999999987422222222 112343 889999999999999985 899999999986544433
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=2.6e-30 Score=270.63 Aligned_cols=267 Identities=14% Similarity=0.158 Sum_probs=209.0
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~ 464 (701)
.+.+|.. |.+++|+|++++|++|+.||.|++|++.......+... ...+|...|.+++|+| |+++|++++.||.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD---SWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE---EEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc---eeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4678999 99999999999999999999999999973221112222 2346889999999999 6999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
|++||+..+..... ......+.. + ..|...|.+++|+ +.++++++ ||.|++||+++++.+.
T Consensus 83 v~vwd~~~~~~~~~------------~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 83 VKLWEEDPDQEECS------------GRRWNKLCT-L-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EEEEEECTTSCTTS------------SCSEEEEEE-E-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred EEEEecCCCccccc------------ccCcceeee-e-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 99998855421000 000022221 2 4688999999999 56788988 9999999998877544
Q ss_pred Eec-------------CCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCce--EEeecCCCCCeEEEEEecCC--
Q 005342 540 TFA-------------NPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL-- 598 (701)
Q Consensus 540 ~~~-------------~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~v~~spdg-- 598 (701)
.+. ++...+.+++|+|+ + .+++++.|+.+.+|+...++. +..+.+|...|++++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 332 56778999999998 6 999999999998888887765 77888999999999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCeee-----------------------------------------eeeeeeeccCCCCC
Q 005342 599 --NVLVSSGADAQLCVWDAVGWKKL-----------------------------------------CSKFLHSFQTGLVP 635 (701)
Q Consensus 599 --~~l~s~s~D~~I~vwd~~~g~~~-----------------------------------------~~~~l~~~~~~~~~ 635 (701)
++|++|+.||.|++||+..+... ....+..+ .+|.
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~- 306 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHN- 306 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTS-
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-eccc-
Confidence 89999999999999999875210 11233322 2555
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 636 ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 636 ~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
..|++++|+|++++|+++ .||.|++||+.+++.++.+.
T Consensus 307 --~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 --GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp --SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred --ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 899999999999999996 79999999999987666554
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.6e-30 Score=276.35 Aligned_cols=260 Identities=14% Similarity=0.049 Sum_probs=198.4
Q ss_pred CcccccccCccce----------eEEEeecCcceeeeEEEEccC----------------CCCCeEEEEeccCCcccccc
Q 005342 307 DKLKFPSMDKSRL----------LSLIKQIMDWWVPYCINVMPN----------------ANNETISLKDFPTVSNLRYA 360 (701)
Q Consensus 307 ~~i~iwd~~~~~~----------~~~l~~h~~~v~~~~l~fspd----------------s~d~~i~lWd~~~~~~~~~~ 360 (701)
++|++|++..+.. ...+.+|.+.|. +++++++ +.|+++++|++.++......
T Consensus 43 N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~--s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~ 120 (365)
T 4h5i_A 43 NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPT--AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF 120 (365)
T ss_dssp EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCC--EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceE--EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence 4689998875532 124567888888 8888775 56899999998776543221
Q ss_pred ccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEE--EcCCCcEEEEeccccCCCCceeEeecCC
Q 005342 361 SSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPD 437 (701)
Q Consensus 361 ~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s--~s~d~~v~iw~~~~~~~~~~~~~l~~~~ 437 (701)
.... .......+.. +.+++|||||+++++ ++.|++|++||+. ++++.. .+
T Consensus 121 ---------~~~~-----------~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~----~~~~~~-~~-- 173 (365)
T 4h5i_A 121 ---------LTSV-----------DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS----DLTEKF-EI-- 173 (365)
T ss_dssp ---------EEEE-----------CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT----TTEEEE-EE--
T ss_pred ---------eeee-----------ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC----CCcEEE-Ee--
Confidence 0000 0111235556 899999999999875 4578999999998 554433 22
Q ss_pred CCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342 438 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (701)
Q Consensus 438 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-- 515 (701)
.|...|.+++|+|||+++++++.++ +.+|+. .++..........|...|.+++|+
T Consensus 174 -~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGKVVAYITGSS-LEVIST---------------------VTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp -ECSSCCCEEEECTTSSEEEEECSSC-EEEEET---------------------TTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred -CCCCceEEEEEccCCceEEecccee-EEEEEe---------------------ccCcceeeeecCCCCCCEEEEEEcCC
Confidence 2667899999999999999888654 555533 333322221334688899999999
Q ss_pred CCEEEEEe-CC----eEEEEeCCCCcE----EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cC
Q 005342 516 GSHLFSAS-GG----KISIFSLETFQT----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KG 584 (701)
Q Consensus 516 ~~~l~s~s-dg----~I~iwd~~~~~~----~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~ 584 (701)
+.++++++ |+ .++.||+..... ...+.+|...|++++|+||| +||+|+.|++|+|||+++++++..+ .+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 88888888 65 688999876543 45677889999999999999 9999999999999999999999875 78
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 585 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
|...|++++|+|||++|||||.|++|+|||+...
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999999753
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=3e-30 Score=274.00 Aligned_cols=243 Identities=10% Similarity=0.024 Sum_probs=203.1
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
..|.. |.+++|+|+|++|++|+.|+.|++|++. .++...+. ...+|...|.+++|+|+++++++++.||.|++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~----~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE----TTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCcEEeee-eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 45777 9999999999999999999999999997 55311111 223588999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcE---E-EEe
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---L-ATF 541 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~---~-~~~ 541 (701)
|+ .+++.........|...|.+++|+ ++++++++ ||.|++||+.++.. . ...
T Consensus 80 d~---------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 80 TL---------------------KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp EE---------------------ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred EC---------------------CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 76 333322111113688899999999 88999999 99999999988762 3 333
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC------------------CCCceEEeecCCCCCeEEEEEecCCCEEE
Q 005342 542 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLV 602 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~------------------~~~~~~~~l~~h~~~V~~v~~spdg~~l~ 602 (701)
.+|...|.+++|+|++ ++++|+.||.|++||+ .+++.+..+.+|...|.+++|+|++++|+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 5678999999999999 9999999999999995 46788899999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 603 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 603 s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
+++.|+.|++||+++++.. ..+. +|. ..|++++|+|+++++++|.|+.|++|++.+
T Consensus 219 ~~~~d~~i~i~d~~~~~~~--~~~~----~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAV--ATLA----SET---LPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTEE--EEEE----CSS---CCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCcee--EEEc----cCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 9999999999999987533 2222 444 789999999999999999999999999987
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.7e-30 Score=267.90 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=193.9
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCccccC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFND 391 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~ 391 (701)
..+.+|.+.|. +++|+|+ +.|++|+|||+.++. .+. .+.+
T Consensus 3 ~~~~~h~~~V~--~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~-----------------------------~l~g 51 (297)
T 2pm7_B 3 VIANAHNEMIH--DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID-----------------------------TLTG 51 (297)
T ss_dssp EECCSCSSCEE--EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE-----------------------------EECC
T ss_pred eeccCCcCceE--EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE-----------------------------EEcc
Confidence 45688999999 9999999 889999999997542 222 2457
Q ss_pred CCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342 392 NNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK 466 (701)
Q Consensus 392 h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~ 466 (701)
|.. |++++|+|+ |++|++|+.|++|++||+. .++...+. ...+|...|.+++|+|+ |.+|++++.||.|+
T Consensus 52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~----~~~~~~~~-~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS----SSCBCCCE-EECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC----CCceEEEE-EeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 888 999999864 8999999999999999997 33211111 12358889999999998 88999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C--------------CEEEEEe-CCeEEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G--------------SHLFSAS-GGKISIF 530 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~--------------~~l~s~s-dg~I~iw 530 (701)
+||+.... ...... + .+|...|.+++|+ . ++|++|+ |+.|++|
T Consensus 127 ~wd~~~~~------------------~~~~~~--~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lw 185 (297)
T 2pm7_B 127 VVEFKENG------------------TTSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185 (297)
T ss_dssp EEEBCSSS------------------CBCCEE--E-ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEE
T ss_pred EEEecCCC------------------ceeeee--e-ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEE
Confidence 99874321 000111 1 3688899999998 3 4899999 9999999
Q ss_pred eCCCCc----EEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc---eEEee--cCCCCCeEEEEEecC
Q 005342 531 SLETFQ----TLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK---TKAKL--KGHQNRITCLAYSLS 597 (701)
Q Consensus 531 d~~~~~----~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~---~~~~l--~~h~~~V~~v~~spd 597 (701)
|++++. ....+.+|...|.+++|+|+ + ++++|+.|++|++||+++.. ....+ .+|...|.+++|+|+
T Consensus 186 d~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 265 (297)
T 2pm7_B 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265 (297)
T ss_dssp EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred EEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC
Confidence 998765 66788899999999999998 6 99999999999999988743 12233 468889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 005342 598 LNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~ 617 (701)
|++||+++.|++|++|+...
T Consensus 266 g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 266 GNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEEETTSCEEEEEECT
T ss_pred CCEEEEEcCCCcEEEEEECC
Confidence 99999999999999999873
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=1e-29 Score=271.83 Aligned_cols=269 Identities=12% Similarity=0.103 Sum_probs=212.0
Q ss_pred ccCCCc-eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcE
Q 005342 389 FNDNNQ-SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATH 465 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i 465 (701)
+.+|.. |.+++|+|++ ++|++|+.|+.|++||+. .+.... .+...+|...|.+++|+| +++++++++.||.|
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD----VQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT----STTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC----Ccccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 568888 9999999999 999999999999999997 444333 223346899999999999 78999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
++||+. ++..........|...|.+++|+ +.++++++ |+.|++||+ +++.+..+.
T Consensus 144 ~iwd~~---------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 144 TLRDFS---------------------GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp EEEETT---------------------SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred EEEECC---------------------CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence 999763 22222111113456789999999 88999999 999999999 678888999
Q ss_pred CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC----CceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEC
Q 005342 543 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 543 ~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~ 615 (701)
+|...|.+++|+|++ ++++|+.|+.|++||+++ +..+..+ +|...|++++|+| ++++|++++.|+.|++||+
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 999999999999999 899999999999999998 6667666 6999999999999 9999999999999999999
Q ss_pred CCCeeeeeeeeee-ccCCCC-------CCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeee------eeEEE
Q 005342 616 VGWKKLCSKFLHS-FQTGLV-------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLL------ISHIM 681 (701)
Q Consensus 616 ~~g~~~~~~~l~~-~~~~~~-------~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~------i~~~~ 681 (701)
++++......-.. ....|. .....+..++|+|+|++ ..+.|+.|++||+.+++.+.++.+ +..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence 9875432211110 000111 00133445666666666 223799999999999999999874 66779
Q ss_pred EEeeE
Q 005342 682 FVQIV 686 (701)
Q Consensus 682 fs~~~ 686 (701)
|+|+.
T Consensus 360 ~s~~g 364 (383)
T 3ei3_B 360 FSPTG 364 (383)
T ss_dssp ECTTS
T ss_pred EecCc
Confidence 98864
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.1e-30 Score=282.79 Aligned_cols=301 Identities=9% Similarity=0.088 Sum_probs=218.7
Q ss_pred ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC----
Q 005342 325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN---- 393 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~---- 393 (701)
.|.+.|. +++|+|+ +.|+.|+|||+.++..... ....... ....+.+|.
T Consensus 26 ~~~~~V~--~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------~~~~~~~--------~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 26 AEADIIS--TVEFNHSGELLATGDKGGRVVIFQQEQENKIQS----------HSRGEYN--------VYSTFQSHEPEFD 85 (447)
T ss_dssp CGGGSEE--EEEECSSSSEEEEEETTSEEEEEEECC-----C----------CCCCCEE--------EEEEEECCCCEEE
T ss_pred cccCcEE--EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------cccccee--------Eeccccccccccc
Confidence 3567899 9999999 7899999999988763111 0000000 011145665
Q ss_pred --------c-eEEEEEcCCC--CeEEEEcCCCcEEEEeccccCCCCceeE------------------------------
Q 005342 394 --------Q-SRESTSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRT------------------------------ 432 (701)
Q Consensus 394 --------~-V~~l~~spdg--~~l~s~s~d~~v~iw~~~~~~~~~~~~~------------------------------ 432 (701)
. |.+++|+|++ ..|++++.|+.|++|++.. +....
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE----RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD 161 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE----EEEEEECCSCC--------CCCCCSCCCCEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc----ccCCcceecccCccccccCcccccceEeccccchh
Confidence 6 9999999998 8999999999999999873 11100
Q ss_pred -------eecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC
Q 005342 433 -------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP 505 (701)
Q Consensus 433 -------l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~ 505 (701)
......+|...|.+++|+|+|++|++| .||.|++||+..... .+.+++.... .+ .+|
T Consensus 162 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~~-----~~-~~~ 225 (447)
T 3dw8_B 162 LMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR---------SFNIVDIKPA-----NM-EEL 225 (447)
T ss_dssp EEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE---------EEEEEECCCS-----SG-GGC
T ss_pred eeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---------eeeeeecccc-----cc-ccc
Confidence 000124688999999999999999998 899999998742100 0011111100 02 368
Q ss_pred CCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcE----EEEecCCCC------------CeEEEEEcCCC-eEEEEeC
Q 005342 506 KDSISCFALR--G-SHLFSAS-GGKISIFSLETFQT----LATFANPPP------------IATYFILLPQD-LFAFGFD 564 (701)
Q Consensus 506 ~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~----~~~~~~~~~------------~i~~l~~spdg-~l~~gs~ 564 (701)
...|.+++|+ + +++++++ ||.|++||+++++. +..+.+|.. .|.+++|+|+| ++++++.
T Consensus 226 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 226 TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 8999999999 6 8999999 99999999999886 788888775 89999999999 9999999
Q ss_pred CCcEEEEeCCC-CceEEeecCCCCC---------------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 565 DSSILVHCPCT-KKTKAKLKGHQNR---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 565 dg~I~iwd~~~-~~~~~~l~~h~~~---------------V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
+.|++||+++ ++.+..+.+|... +..++|+|++++|++|+.||.|++||+.+++......-..
T Consensus 306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 384 (447)
T 3dw8_B 306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRE 384 (447)
T ss_dssp -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCST
T ss_pred -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccc
Confidence 9999999997 8888899888642 3348999999999999999999999999986442111000
Q ss_pred ------ccC-------C----------CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 629 ------FQT-------G----------LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 629 ------~~~-------~----------~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
... + .......|..++|+|++++||++..+.+++|.-+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 385 NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 000 0 0001257899999999999999877779999753
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.7e-30 Score=281.52 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=220.8
Q ss_pred eecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342 324 KQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE 397 (701)
Q Consensus 324 ~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~ 397 (701)
.+|...|. |+.|..+ +.|++|++||+.+++....+ .+|.. |.+
T Consensus 130 ~~~~~~v~--~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~-----------------------------~~h~~~v~~ 178 (435)
T 1p22_A 130 SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL-----------------------------TGHTGSVLC 178 (435)
T ss_dssp CSSCCCEE--EEECCSSEEEEEESSSCEEEEESSSCCEEEEE-----------------------------CCCSSCEEE
T ss_pred cCCCCcEE--EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE-----------------------------cCCCCcEEE
Confidence 45666788 8888666 88999999999988877662 36677 989
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
++| ++++|++|+.||.|++||+. ++++.. ...+|...|.+++|+ +..+++|+.||.|++||+.+...
T Consensus 179 l~~--~~~~l~sg~~dg~i~vwd~~----~~~~~~---~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~-- 245 (435)
T 1p22_A 179 LQY--DERVIITGSSDSTVRVWDVN----TGEMLN---TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD-- 245 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEESS----SCCEEE---EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC--
T ss_pred EEE--CCCEEEEEcCCCeEEEEECC----CCcEEE---EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC--
Confidence 988 78899999999999999998 555444 334688999999997 45899999999999998743210
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCC
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 556 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spd 556 (701)
..... ...+|...|.+++++++++++|+ ||.|++||+++++.+..+.+|...|.+++++
T Consensus 246 ----------------~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-- 305 (435)
T 1p22_A 246 ----------------ITLRR--VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-- 305 (435)
T ss_dssp ----------------CEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--
T ss_pred ----------------ceeee--EecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--
Confidence 01111 12478899999999989999999 9999999999999999999999999999994
Q ss_pred C-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee----eeeeeeccC
Q 005342 557 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----SKFLHSFQT 631 (701)
Q Consensus 557 g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~----~~~l~~~~~ 631 (701)
+ .+++|+.||.|++||+++++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.++.... ...+..+ .
T Consensus 306 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~ 382 (435)
T 1p22_A 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-V 382 (435)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-C
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-c
Confidence 5 9999999999999999999999999999999999998 78899999999999999997643100 0023322 2
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee---eeEEEE
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL---ISHIMF 682 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~---i~~~~f 682 (701)
+|. ..|++++| ++++|+++ .||+|++||+.++......+. ..+++|
T Consensus 383 ~h~---~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 432 (435)
T 1p22_A 383 EHS---GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTY 432 (435)
T ss_dssp CCS---SCCCCEEE--CSSCEEECCSSSEEEEEC---------------------
T ss_pred CCC---CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceee
Confidence 555 88999999 77888886 799999999988766554443 444444
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6e-30 Score=277.47 Aligned_cols=253 Identities=14% Similarity=0.182 Sum_probs=208.6
Q ss_pred CcccccccCccceeEEEe--ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342 307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA 377 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (701)
++|++||..+|++...+. +|...|. +++|+|+ +.|++|+|||+.+++++.. +
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~--sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~----------~------- 185 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------M------- 185 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEE--EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------E-------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEE--EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE----------E-------
Confidence 899999999999998776 5667788 9999999 8999999999999988776 2
Q ss_pred ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
.+|.. |.++++ ++..+++|+.|+.+++|+... ...... ...+|...+..+.|+|+|+++
T Consensus 186 ------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~----~~~~~~--~~~~h~~~~~~~~~~~~g~~l 245 (420)
T 4gga_A 186 ------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV----AEHHVA--TLSGHSQEVCGLRWAPDGRHL 245 (420)
T ss_dssp ------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS----SSCEEE--EEECCSSCEEEEEECTTSSEE
T ss_pred ------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeecc----cceeeE--EecccccceeeeeecCCCCee
Confidence 35566 777666 567999999999999999873 221111 223588999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEE--e-CCeEEEE
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA--S-GGKISIF 530 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~--s-dg~I~iw 530 (701)
++++.||.+++|+...+.. . ...+. ....|...|.+++|+ +..++++ + |+.|++|
T Consensus 246 ~s~~~D~~v~i~~~~~~~~----------------~-~~~~~--~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEG----------------G-WVPLQ--TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp EEEETTSCEEEEESSCCSS----------------C-SCCSE--EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred eeeeccccceEEeeccccc----------------c-ceeee--eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 9999999999998744321 0 00111 113688899999998 5566654 4 8999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D 607 (701)
|+.+++....+.. ...+.++.|+|++ .+++++ .|+.|++||+.+++.+.++.||.+.|++++|+|||++|||||.|
T Consensus 307 d~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 307 NVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp ETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9999999988874 4578999999999 666554 79999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCC
Q 005342 608 AQLCVWDAVGW 618 (701)
Q Consensus 608 ~~I~vwd~~~g 618 (701)
++|+|||+...
T Consensus 386 ~tvriWdv~~~ 396 (420)
T 4gga_A 386 ETLRLWRCFEL 396 (420)
T ss_dssp TEEEEECCSCS
T ss_pred CeEEEEECCCC
Confidence 99999999874
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5.3e-30 Score=276.08 Aligned_cols=280 Identities=7% Similarity=0.068 Sum_probs=218.5
Q ss_pred EEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcC-C
Q 005342 334 CINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLP-D 403 (701)
Q Consensus 334 ~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~sp-d 403 (701)
+++++|+ +.||.|+||++........ ....+.+|.. |.+++|+| +
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------------------------~~~~~~~h~~~V~~~~~~p~~ 93 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------------------------NVPLVCGHTAPVLDIAWCPHN 93 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------------------------TCCCBCCCSSCEEEEEECTTC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------------------------CCceEecCCCCEEEEEeCCCC
Confidence 5777777 6799999999965432211 1223568888 99999999 9
Q ss_pred CCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCC-CEEEEEECCCcEEEEecCCCCccccc
Q 005342 404 ADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEE 479 (701)
Q Consensus 404 g~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~ 479 (701)
+++|++|+.||.|++|++.+..... .... ...+|...|.+++|+|++ ..+++++.||.|++||+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~--------- 161 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV--------- 161 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSE---EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET---------
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceE---EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC---------
Confidence 9999999999999999997421110 1111 123588999999999998 69999999999999965
Q ss_pred cccceeeEEeeCCCCeEEeeccc-CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEe-cCCCCC-eEEEEE
Q 005342 480 ENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF-ANPPPI-ATYFIL 553 (701)
Q Consensus 480 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~-~~~~~~-i~~l~~ 553 (701)
.+++.... +. ..|...|.+++|+ +++|++++ ||.|++||+++++.+..+ .+|... +.+++|
T Consensus 162 ------------~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 162 ------------GTGAAVLT-LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp ------------TTTEEEEE-ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred ------------CCCCccEE-EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 45554432 31 4688999999999 88999999 999999999999999888 677665 899999
Q ss_pred cCCC-eEEEE---eCCCcEEEEeCCCCce-EEeec-CCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeee
Q 005342 554 LPQD-LFAFG---FDDSSILVHCPCTKKT-KAKLK-GHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 554 spdg-~l~~g---s~dg~I~iwd~~~~~~-~~~l~-~h~~~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
+|++ ++++| +.|+.|++||+++++. +.... .|...+.+++|+|++++|++ |+.|+.|++||+.+++.. ...+
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-~~~l 307 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-LHYL 307 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-EEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-eEee
Confidence 9999 99999 7999999999998654 33332 47778999999999998864 557999999999987531 1223
Q ss_pred eeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
.... +. ..|.+++|+|++.++++ .++.+++|++.++++
T Consensus 308 ~~~~--~~---~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 308 SMFS--SK---ESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEC--CS---SCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred cccc--cC---CcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence 3122 22 88999999999998765 456899999988754
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.4e-29 Score=263.88 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=220.0
Q ss_pred EeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-
Q 005342 323 IKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ- 394 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~- 394 (701)
..+|.+.|. +++|+|+ +.|++|++||+.++..... ...+.+|..
T Consensus 7 ~~~h~~~v~--~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~--------------------------~~~~~~~~~~ 58 (342)
T 1yfq_A 7 EQAPKDYIS--DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--------------------------LLQSLRYKHP 58 (342)
T ss_dssp SSCCSSCEE--EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE--------------------------EEEEEECSSC
T ss_pred ccCCCCcEE--EEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc--------------------------ceeeeecCCc
Confidence 467999999 9999999 7899999999988762111 011236777
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEec-cccCCCCceeEeecCCCC--CCCCEEEEEEecCCCEEEEEECCCcEEEEec
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKL-QLINEPSECRTLLLPDNS--FGGRVVRLIYSHSGDFLVALTQTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~-~~~~~~~~~~~l~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 470 (701)
|.+++|+|+++ +|++|+.||.|++|++ . .++... ..+ |...|.+++|+| +..+++++.||.|++||+
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~----~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIG----SPSFQA----LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECSSS----SSSEEE----CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEecc----CCceEe----ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence 99999999999 9999999999999999 7 454433 235 889999999999 999999999999999987
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCC-Cc--EEEEecCCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQ--TLATFANPPP 546 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~-~~--~~~~~~~~~~ 546 (701)
.+..... ....++.+.. + .|...|.+++|+++.+++++ |+.|++||+++ +. .......+..
T Consensus 130 ~~~~~~~------------~~~~~~~~~~-~--~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 130 RNYGDGV------------IAVKNLNSNN-T--KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp HHHTTBC------------EEEEESCSSS-S--SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred ccccccc------------ccccCCeeeE-E--eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 3200000 0000222211 2 37789999999944488888 99999999988 54 3334456788
Q ss_pred CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCC------ceEEeecCCCC---------CeEEEEEecCCCEEEEEeCCCe
Q 005342 547 IATYFILLP-QD-LFAFGFDDSSILVHCPCTK------KTKAKLKGHQN---------RITCLAYSLSLNVLVSSGADAQ 609 (701)
Q Consensus 547 ~i~~l~~sp-dg-~l~~gs~dg~I~iwd~~~~------~~~~~l~~h~~---------~V~~v~~spdg~~l~s~s~D~~ 609 (701)
.+.+++|+| ++ ++++|+.||.|++||++.. +....+.+|.. .|++++|+|++++|++++.||.
T Consensus 195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 999999999 99 9999999999999999887 77888888865 9999999999999999999999
Q ss_pred EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe-EEEEE
Q 005342 610 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ-IDVYE 664 (701)
Q Consensus 610 I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~-I~iwd 664 (701)
|++||+.+++. +..+..+|. ..|++++ |++++|+++ .||+ .+.|.
T Consensus 275 i~vwd~~~~~~-----~~~~~~~h~---~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 275 ISCWNLQTRKK-----IKNFAKFNE---DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEETTTTEE-----EEECCCCSS---SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEcCccHhH-----hhhhhcccC---CCceEec--CCCCeEEEEecCCccccccc
Confidence 99999999753 232433335 8899999 999999985 8998 44444
No 89
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=268.29 Aligned_cols=288 Identities=12% Similarity=0.112 Sum_probs=222.5
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC----------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN----------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd----------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
+....|+..+.+.+..+.+|.+.|. +++|+|+ +.|++|++||+.+ +..+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~---------------- 80 (368)
T 3mmy_A 19 GSATTDNHNPMKDIEVTSSPDDSIG--CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK---------------- 80 (368)
T ss_dssp ----CCSSCTTCCEECSSCCSSCEE--EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE----------------
T ss_pred EEeccCCCCCcceeEeccCCCCceE--EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE----------------
Confidence 3445677778888889999999999 9999995 7799999999987 443322
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE--ecC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY--SHS 452 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~--spd 452 (701)
.+.+|.. |.+++|+|++++|++|+.||.|++||+. .+++..+. .|...|.+++| +|+
T Consensus 81 ------------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~----~~~~~v~~~~~~~~~~ 140 (368)
T 3mmy_A 81 ------------AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS----SNQAIQIA----QHDAPVKTIHWIKAPN 140 (368)
T ss_dssp ------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TTEEEEEE----ECSSCEEEEEEEECSS
T ss_pred ------------EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC----CCCceeec----cccCceEEEEEEeCCC
Confidence 2357788 9999999999999999999999999998 55554433 38899999999 899
Q ss_pred CCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEe
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 531 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd 531 (701)
++++++++.||.|++||+. +++.+.. +. ....+.++.+.+..+++++ ++.+.+||
T Consensus 141 ~~~l~~~~~dg~i~vwd~~---------------------~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 141 YSCVMTGSWDKTLKFWDTR---------------------SSNPMMV-LQ--LPERCYCADVIYPMAVVATAERGLIVYQ 196 (368)
T ss_dssp CEEEEEEETTSEEEEECSS---------------------CSSCSEE-EE--CSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred CCEEEEccCCCcEEEEECC---------------------CCcEEEE-Ee--cCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence 9999999999999999763 3332221 11 2346667777766667776 99999999
Q ss_pred CCCCcEEEEec--CCCCCeEEEEEcCCC-e----EEEEeCCCcEEEEeCCCC---ceEEeecCCCC------------Ce
Q 005342 532 LETFQTLATFA--NPPPIATYFILLPQD-L----FAFGFDDSSILVHCPCTK---KTKAKLKGHQN------------RI 589 (701)
Q Consensus 532 ~~~~~~~~~~~--~~~~~i~~l~~spdg-~----l~~gs~dg~I~iwd~~~~---~~~~~l~~h~~------------~V 589 (701)
++......... .+...+.++++.+++ . +++|+.||.|++||++.. ..+..+.+|.. .|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence 98765433222 234556677776655 3 999999999999999987 56777788776 79
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 590 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 590 ~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
++++|+|++++|++|+.||.|++||+.+++.. ..+. +|. ..|++++|+|+|++|+++ .|+..+.|++
T Consensus 277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~-~~~---~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-----KTSE-QLD---QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----EECC-CCS---SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEEEecCCCEEEEEccCCeEEEEECCCCcEE-----EEec-CCC---CCceEEEECCCCCeEEEEecccccccccc
Confidence 99999999999999999999999999997533 2232 554 899999999999999985 6665444443
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-30 Score=278.24 Aligned_cols=245 Identities=10% Similarity=0.016 Sum_probs=193.1
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
.|.. |++++|+|+|++|++|+.|+.|++|++. ++.... .....+|...|.+++|+|++++|++++.||.|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~----~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD----GNGWKH-ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE----TTEEEE-CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc----CCceEE-EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3445 9999999999999999999999999997 442111 114456899999999999999999999999999997
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc---EEEEecC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN 543 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~---~~~~~~~ 543 (701)
+.++. ....... + .+|...|.+++|+ +++|++++ |+.|++||+++++ ....+.+
T Consensus 84 ~~~~~------------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 84 KRPDG------------------TWKQTLV-L-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp -----------------------CCCCEEE-C-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred cCCCC------------------ceeeeeE-e-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 73321 0001111 2 4688999999999 88999999 9999999999887 4677777
Q ss_pred -CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC------------------CCceEEeecCCCCCeEEEEEecCCCEEEE
Q 005342 544 -PPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVS 603 (701)
Q Consensus 544 -~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~------------------~~~~~~~l~~h~~~V~~v~~spdg~~l~s 603 (701)
|...|++++|+|++ ++++|+.|+.|++||+. .++.+..+ +|.+.|++++|+|++++|++
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 89999999999999 99999999999999985 35667777 89999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
++.|++|++||+.+++... ..+..+. +|. ..|++++|+|+|++|++|.++.+.+|+..
T Consensus 223 ~~~d~~i~iwd~~~~~~~~-~~~~~~~-~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQPP-RALITVK-LSQ---LPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EETTTEEC-CEECSTTSCE-EECCCEE-CSS---SCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EeCCCcEEEEECCCCCCcc-eeeEeec-CCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 9999999999999975311 1122222 554 88999999999999999876666688775
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.1e-29 Score=272.38 Aligned_cols=267 Identities=12% Similarity=0.145 Sum_probs=217.0
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecC----C---CEE
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFL 456 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spd----g---~~l 456 (701)
.+.+|.. |.+++|+| ++|++|+.||.|++|++....... ....+ .+|...|.+++|+|+ | ++|
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH----FVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE----ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE----ecCCCcEEEEEEecccccCCccccEE
Confidence 3678998 99999999 799999999999999998321000 12222 258899999999999 9 999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-----CCCeEEEEec------CCE-EEEEe-
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS- 523 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~l~~s------~~~-l~s~s- 523 (701)
++++.||.|++||+.+... ........ + ..| ...|.+++|+ +++ +++++
T Consensus 85 ~s~~~dg~i~iw~~~~~~~----------------~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDE----------------TKKVIFEK-L-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp EEEETTSCEEEEEEEECTT----------------TCCEEEEE-E-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred EEEcCCCCEEEEEccCCcc----------------ccccccee-e-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 9999999999998743311 00001211 2 245 5889999997 778 99998
Q ss_pred CCeEEEEeCCC------CcEEE-----Ee-------cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-
Q 005342 524 GGKISIFSLET------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 584 (701)
Q Consensus 524 dg~I~iwd~~~------~~~~~-----~~-------~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~- 584 (701)
||.|++||+.+ ++.+. .+ ..|...|.+++|+|++.+++|+.||.|++||+++++.+..+.+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecc
Confidence 99999999988 66665 66 4478899999999998888999999999999999999999998
Q ss_pred --C---CCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeeeeeeeeeeccCC------------CCCCCCCeEEEE
Q 005342 585 --H---QNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG------------LVPETTIVNHIQ 644 (701)
Q Consensus 585 --h---~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~------------~~~~~~~v~~v~ 644 (701)
| ...|.+++|+|++++|++++.| +.|++||+.+++... . +... |. ..|.+++
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~--~---~~~~~~~~~~~~~~~~~~---~~v~~~~ 298 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG--S---LSVPTHSSQASLGEFAHS---SWVMSLS 298 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE--E---ECBC--------CCBSBS---SCEEEEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc--e---eccCcccccccccccccC---CcEEEEE
Confidence 9 9999999999999999999999 999999999875332 2 2220 44 8999999
Q ss_pred EcCCCCEEEEE-ecCeEEEEECCCCceeeeee-----------------------e--eeEEEEEeeE
Q 005342 645 FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL-----------------------L--ISHIMFVQIV 686 (701)
Q Consensus 645 ~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~-----------------------~--i~~~~fs~~~ 686 (701)
|+|++++|+++ .||.|++||+.+++.+..+. . |++++|+|+.
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 99999999996 79999999999999998887 5 9999999874
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=278.92 Aligned_cols=271 Identities=10% Similarity=0.072 Sum_probs=197.7
Q ss_pred CCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCC-----CCceeEeecCCCCCC------------CCEEEEEEecCC
Q 005342 392 NNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSECRTLLLPDNSFG------------GRVVRLIYSHSG 453 (701)
Q Consensus 392 h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~-----~~~~~~l~~~~~~~~------------~~v~~l~~spdg 453 (701)
|.+ |.+++|+|+|++||+|+.||.|++|++..... .+. ..+.....+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC-EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-eeEecccccccccccccccccccCceEEEEEcCCC
Confidence 455 99999999999999999999999999973221 011 11111223576 889999999998
Q ss_pred --CEEEEEECCCcEEEEecCCCCcc---------cccc-----cccee-----eEEeeCCCCeEEeecccCCCCCCeEEE
Q 005342 454 --DFLVALTQTATHKLWKWQSNKQS---------LEEE-----NVNME-----SQLYQPSSKLVMTNDIAADPKDSISCF 512 (701)
Q Consensus 454 --~~l~s~s~dg~i~vwd~~~~~~~---------~g~~-----~~~~~-----i~~~d~~~~~~~~~~~~~~~~~~v~~l 512 (701)
..+++++.||.|++||+...... .|.. ..... ..-+.... ... ..+..+|...|.++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPR-RIFANAHTYHINSI 183 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEE-EEECSCCSSCCCEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cce-EEeccCCCcceEEE
Confidence 79999999999999998653220 0000 00000 00000000 000 01235799999999
Q ss_pred Eec--CCEEEEEeCCeEEEEeCCC-CcEEE-------EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce--
Q 005342 513 ALR--GSHLFSASGGKISIFSLET-FQTLA-------TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-- 578 (701)
Q Consensus 513 ~~s--~~~l~s~sdg~I~iwd~~~-~~~~~-------~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~-- 578 (701)
+|+ ++++++|.|+.|++||+++ ++... .+.+|...|++++|+|++ ++++|+.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 184 SINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp EECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 999 8889988799999999984 44444 255788999999999997 999999999999999999887
Q ss_pred --EEeecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCC-----
Q 005342 579 --KAKLKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT----- 638 (701)
Q Consensus 579 --~~~l~~h~~------------~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~----- 638 (701)
+..+.+|.. .|.+++|+|+|++|++++. +.|++||+++ ++.. ..+. +|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~--~~~~----~~~~~~~~l~~~ 336 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV--ETYQ----VHEYLRSKLCSL 336 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS--CCEE----SCGGGTTTHHHH
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc--ceee----cccccccccccc
Confidence 788888876 8999999999999999999 9999999997 5422 2222 3320000
Q ss_pred -------CeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 639 -------IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 639 -------~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
.+..++|+|++++|++| .||.|++||+.+++.+.
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 13459999999999997 89999999999988754
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=274.50 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=206.7
Q ss_pred cCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 005342 390 NDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 467 (701)
Q Consensus 390 ~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 467 (701)
.+|.. |++++|+| ++++|++|+.||.|++||+..... +......... .|...|.+++|+|++++|++|+.||.|++
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc-Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 57877 99999999 999999999999999999974111 1111100011 37899999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEe
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATF 541 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~ 541 (701)
||+.... .|.... ..... .+....+.. ++...+.++.+. +.++++++ ||.|++||+++++.+..+
T Consensus 138 wd~~~~~--~~~~~~-----~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 138 LKVNHYQ--QESEVK-----FLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EEEEEEE--ETTEEE-----EEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEecccc--CCceee-----ccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9884210 011000 00000 000000111 156678888744 77899999 999999999999999999
Q ss_pred cC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeec-CCCCCeEEEEEec----CCCEEEEEeCCCeEEEE
Q 005342 542 AN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL----SLNVLVSSGADAQLCVW 613 (701)
Q Consensus 542 ~~--~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~v~~sp----dg~~l~s~s~D~~I~vw 613 (701)
.+ |...|++++|+|++ ++++|+.||.|++||+++++.+..+. +|...|++++|+| ++.+|++|+.|++|++|
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 88 78999999999999 99999999999999999999999886 6888999996665 67799999999999999
Q ss_pred ECCCCeeeeeeeeee-------cc-----------CCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342 614 DAVGWKKLCSKFLHS-------FQ-----------TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 614 d~~~g~~~~~~~l~~-------~~-----------~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l 674 (701)
|+.+++......-.. +. .+ ..+...|++++|+ ++++|++| .|+.|++||+.+++....+
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 999986433211000 00 01 0023779999999 77889987 7999999999999988777
Q ss_pred ee
Q 005342 675 LL 676 (701)
Q Consensus 675 ~~ 676 (701)
.+
T Consensus 367 ~~ 368 (437)
T 3gre_A 367 IS 368 (437)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 94
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.1e-29 Score=266.36 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=211.8
Q ss_pred ccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCce-eEee-cCCCCCCCCEEEEEEecC----CCEEE
Q 005342 389 FNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSEC-RTLL-LPDNSFGGRVVRLIYSHS----GDFLV 457 (701)
Q Consensus 389 l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~-~~~~~~~~~v~~l~~spd----g~~l~ 457 (701)
..+|.. |.+++|+|+ ...+++++.++.|++|++.+ +.. ..+. .....|...|.+++|+|+ |.+++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 457888 999999994 45666677778999999973 322 2222 222236788999999999 67999
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCC
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~ 533 (701)
+|+.||.|++||+ .+++.+.. + .+|...|.+++|+ ++++++++ ||.|++||++
T Consensus 90 ~~~~dg~i~v~d~---------------------~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 90 VAGSRGIIRIINP---------------------ITMQCIKH-Y-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EEETTCEEEEECT---------------------TTCCEEEE-E-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EecCCCEEEEEEc---------------------hhceEeee-e-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 9999999999965 44554432 2 3688999999998 78899999 9999999999
Q ss_pred CCcEEEEe---cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC-------------------------
Q 005342 534 TFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------------------------- 584 (701)
Q Consensus 534 ~~~~~~~~---~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~------------------------- 584 (701)
+++.+..+ .+|...|.+++|+|++ ++++|+.||.|++||+++++....+..
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 99998888 6799999999999999 999999999999999998766544443
Q ss_pred ---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee---------eeeeeeeccCCCCCCCCCeEEEEEcCC--CC
Q 005342 585 ---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------CSKFLHSFQTGLVPETTIVNHIQFHPD--QI 650 (701)
Q Consensus 585 ---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~---------~~~~l~~~~~~~~~~~~~v~~v~~spd--g~ 650 (701)
|...|.+++|+ ++++++++.|+.|++||+.++... ....+..+. +|. ..|++++|+|+ ++
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQ---CDIWYMRFSMDFWQK 300 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSS---CCSSCCCCEECTTSS
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccC---CcEEEEEEcCCCCCc
Confidence 99999999998 779999999999999999886430 012233222 444 78999999999 99
Q ss_pred EEEEE-ecCeEEEEECCCCceee----eeee------eeEEEEEeeE
Q 005342 651 HLLSI-HEGQIDVYEAPTLNHTS----QVLL------ISHIMFVQIV 686 (701)
Q Consensus 651 ~l~sg-~Dg~I~iwd~~~g~~~~----~l~~------i~~~~fs~~~ 686 (701)
+|++| .||.|++||+.+++... .+.+ |++++|+|+.
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 99997 79999999999886433 4442 9999999864
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.4e-30 Score=265.22 Aligned_cols=242 Identities=9% Similarity=0.080 Sum_probs=187.9
Q ss_pred EEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc
Q 005342 322 LIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ 394 (701)
Q Consensus 322 ~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~ 394 (701)
.+.+|.+.|. +++|+|+ +.|++|+|||+.++..... ..+.+|..
T Consensus 8 ~~~~H~~~V~--~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~---------------------------~~l~gH~~ 58 (316)
T 3bg1_A 8 VDTSHEDMIH--DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI---------------------------ADLRGHEG 58 (316)
T ss_dssp ------CCEE--EEEECGGGCEEEEEETTTEEEEEEEETTEEEEE---------------------------EEEECCSS
T ss_pred ecccccCeEE--EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE---------------------------EEEcCCCc
Confidence 4578999999 9999998 8899999999987753211 12457888
Q ss_pred -eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEEEEe
Q 005342 395 -SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWK 469 (701)
Q Consensus 395 -V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd 469 (701)
|++++|+| ++++|++|+.|++|++||+. .+...... ...+|...|.+++|+|+ |.+|++|+.||.|++||
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~----~~~~~~~~-~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREE----NGTWEKSH-EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEETTSCEEEECCS----SSCCCEEE-EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred cEEEEEeCCCCCCCEEEEEECCCEEEEEECC----CCcceEEE-EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 99999986 48999999999999999997 44221111 23468899999999998 78999999999999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C------------------CEEEEEe-CCeEEE
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G------------------SHLFSAS-GGKISI 529 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~------------------~~l~s~s-dg~I~i 529 (701)
+.... ...... ...+|...|.+++|+ . .+|++|+ |+.|++
T Consensus 134 ~~~~~-------------------~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 134 YTGEG-------------------QWEVKK-INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ECSSS-------------------CEEECC-BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred cCCCC-------------------Ccceee-eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 74321 000001 123577777777776 2 5789999 999999
Q ss_pred EeCCCC---cEEEEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCCc----eEEeecCCCCCeEEEEEecC
Q 005342 530 FSLETF---QTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 530 wd~~~~---~~~~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~v~~spd 597 (701)
||++++ +.+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+.. ....+.+|...|.+++|+|+
T Consensus 194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp EEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred EEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence 999755 4677788999999999999973 79999999999999987631 22345678899999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 005342 598 LNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~ 617 (701)
+++||+++.|++|++|+...
T Consensus 274 g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TCCEEEEESSSCEEEEEECT
T ss_pred CCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999863
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3e-29 Score=265.53 Aligned_cols=288 Identities=10% Similarity=0.027 Sum_probs=201.9
Q ss_pred ccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCC
Q 005342 311 FPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSN 384 (701)
Q Consensus 311 iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~ 384 (701)
+|++.+.+.+..++.|.+.|. +++|+|| +.+..+++||+.++......
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~--~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~------------------------ 56 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVT--DYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ------------------------ 56 (355)
T ss_dssp ----------------CCCCC--EEEECTTSSEEEEECSSEEEEEEETTEEEEEEE------------------------
T ss_pred cccccccCCccccccCCCceE--EEEECCCCCEEEEEcCCEEEEEecCCcceeeee------------------------
Confidence 577888888888899999999 9999999 55667899999877655441
Q ss_pred CCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342 385 DSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 385 ~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
.+..+..+++.++++.+ ++|+.|++|++||.. ++++.. .+ .+...|.++.+++++ ++++ .|+
T Consensus 57 ------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~----~~~~~~-~~---~~~~~v~~v~~~~~~--~~~~-~~~ 119 (355)
T 3vu4_A 57 ------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV----KKQDVS-RI---KVDAPVKDLFLSREF--IVVS-YGD 119 (355)
T ss_dssp ------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT----TTEEEE-EE---ECSSCEEEEEECSSE--EEEE-ETT
T ss_pred ------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC----CCcEEE-EE---ECCCceEEEEEcCCE--EEEE-EcC
Confidence 11125678899988887 567788999999997 554433 12 145689999999875 3433 478
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE--Ee-CCeEEEEeCCCCc----
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS--AS-GGKISIFSLETFQ---- 536 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s--~s-dg~I~iwd~~~~~---- 536 (701)
.+++||+.+.. +.+.. +. .+...++++..++++ |+ ||.|++||+.++.
T Consensus 120 ~i~i~d~~~~~--------------------~~~~~-~~----~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~ 174 (355)
T 3vu4_A 120 VISVFKFGNPW--------------------KRITD-DI----RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATT 174 (355)
T ss_dssp EEEEEESSTTC--------------------CBSSC-CE----EEEEEEEEETTEEEEEESSCTTCEEEEECCC------
T ss_pred EEEEEECCCCc--------------------eeeEE-ec----cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccc
Confidence 99999774320 21111 11 122333444455665 45 8999999998765
Q ss_pred ------------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCc-EEEEeCCCCceEEeec-C-CCCCeEEEEEecCCCE
Q 005342 537 ------------TLATFANPPPIATYFILLPQD-LFAFGFDDSS-ILVHCPCTKKTKAKLK-G-HQNRITCLAYSLSLNV 600 (701)
Q Consensus 537 ------------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~-I~iwd~~~~~~~~~l~-~-h~~~V~~v~~spdg~~ 600 (701)
.+..+.+|...|++++|+|+| ++++|+.|++ |++||+++++.+..+. + |.+.|++++|+|+|++
T Consensus 175 ~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~ 254 (355)
T 3vu4_A 175 QDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK 254 (355)
T ss_dssp ------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE
T ss_pred ccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE
Confidence 267889999999999999999 9999999998 9999999999999998 6 9999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeeee-----------------ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEE
Q 005342 601 LVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 662 (701)
Q Consensus 601 l~s~s~D~~I~vwd~~~g~~~~~~~l~~-----------------~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~i 662 (701)
|++++.|++|++||+..+.......+.. +..+.. .....++|+|||+.++++ .||.+++
T Consensus 255 l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 255 LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH---VRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT---CCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC---CCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999999999998753222111110 111111 334679999999999997 8999999
Q ss_pred EECCCCc
Q 005342 663 YEAPTLN 669 (701)
Q Consensus 663 wd~~~g~ 669 (701)
|++..++
T Consensus 332 ~~~~~~~ 338 (355)
T 3vu4_A 332 FKVVFDD 338 (355)
T ss_dssp EEEEEET
T ss_pred EEEEcCC
Confidence 9986543
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=264.53 Aligned_cols=264 Identities=12% Similarity=0.109 Sum_probs=208.3
Q ss_pred ccCCCc-eEEEEEcCCCCeE-EEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC---CCEEEEEE
Q 005342 389 FNDNNQ-SRESTSLPDADSA-VCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALT 460 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l-~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd---g~~l~s~s 460 (701)
+.+|.. |.+++|+|++..+ ++|+. |+.|++|++. +++...... .+|...|.+++|+|+ |+++++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ----HGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC----SSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC----CCcccceee--ecccCcEEEEEEcCCCCCCceEEEec
Confidence 567998 9999999999655 55665 8999999998 554433221 147889999999999 69999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEe------c--CCEEEEEe-CCeEEEE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIF 530 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~------s--~~~l~s~s-dg~I~iw 530 (701)
.||.|++||+.+ +. .+.. + .+|...|.+++| + ++++++++ ||.|++|
T Consensus 88 ~dg~i~iwd~~~---------------------~~~~~~~-~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 88 FGGNLHIWNLEA---------------------PEMPVYS-V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp TTSCEEEECTTS---------------------CSSCSEE-E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred CCCeEEEEeCCC---------------------CCccEEE-E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 999999997633 22 2211 2 478899999954 5 77999999 9999999
Q ss_pred eCCCCc-EEEEecCCCC----CeEEEE----EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEec---C
Q 005342 531 SLETFQ-TLATFANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---S 597 (701)
Q Consensus 531 d~~~~~-~~~~~~~~~~----~i~~l~----~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp---d 597 (701)
|+.++. .+..+..+.. .+.+++ |+|++ ++++|+.||.|++||+++++.... ..|...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC
Confidence 999886 6777765544 788888 78899 999999999999999999887554 55889999999999 9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCCc------
Q 005342 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTLN------ 669 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g~------ 669 (701)
++++++++.||.|++||+++++.........+ .+|. ..|++++|+|+++ +++++ .||.|++||+.++.
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSE-KAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEEEE-ECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeeecc-CCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 99999999999999999998654332222212 2454 8999999999998 77775 79999999997653
Q ss_pred -------------eeeeeee----eeEEEEEeeE
Q 005342 670 -------------HTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 670 -------------~~~~l~~----i~~~~fs~~~ 686 (701)
.+..+.+ |++++|+|+.
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 333 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK 333 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence 4555554 9999999874
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.3e-29 Score=269.14 Aligned_cols=271 Identities=10% Similarity=0.065 Sum_probs=209.0
Q ss_pred ccCCCc-eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEee------cCCCCCCCCEEEEEEec-CCCEEEEE
Q 005342 389 FNDNNQ-SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL------LPDNSFGGRVVRLIYSH-SGDFLVAL 459 (701)
Q Consensus 389 l~~h~~-V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~------~~~~~~~~~v~~l~~sp-dg~~l~s~ 459 (701)
+.+|.. |.+++|+| ++++|++|+.||.|++|++.+........... ....+|...|.+++|+| ++.+++++
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 356888 99999999 99999999999999999998432222111000 01124889999999999 77899999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCC
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLE 533 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~ 533 (701)
+.||.|++||+ .++..... + .+...+.++.++ +.++++++ ||.|++||++
T Consensus 119 ~~d~~i~iwd~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 119 SFDKTLKVWDT---------------------NTLQTADV-F--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp ETTSEEEEEET---------------------TTTEEEEE-E--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred eCCCeEEEeeC---------------------CCCcccee-c--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 99999999965 44554332 2 256778888888 34888888 9999999999
Q ss_pred CCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEee---------------cCCCCCeEEEEEe
Q 005342 534 TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYS 595 (701)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~-~~~~l---------------~~h~~~V~~v~~s 595 (701)
+++.+..+.+|...|.+++|+|++ .+++|+.||.|++||++++. .+..+ .+|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 999999999999999999999999 58999999999999998765 33333 5688999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 596 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
|++++|++++.|+.|++||+.+++........ ...... ......+...+.+.+++++.|+.|++||+.+++.+..+.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-VCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-CCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceecccc-cccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 99999999999999999999997643211111 000110 022223333444555556799999999999999999998
Q ss_pred e----eeEEEEEeeE
Q 005342 676 L----ISHIMFVQIV 686 (701)
Q Consensus 676 ~----i~~~~fs~~~ 686 (701)
+ |++++|+|+.
T Consensus 332 ~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 332 GHYKTVDCCVFQSNF 346 (408)
T ss_dssp CCSSCEEEEEEETTT
T ss_pred cCCCeEEEEEEcCCC
Confidence 7 9999999864
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.1e-28 Score=258.86 Aligned_cols=252 Identities=12% Similarity=0.046 Sum_probs=208.4
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc----eeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCC
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE----CRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTA 463 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~----~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg 463 (701)
.+|.. |.+++|+|++++|++|+.|+.|++|++. .+. ...+. .|...|.+++|+|+++ ++++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~----~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD----IQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE----TTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC----CCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCCC
Confidence 47888 9999999999999999999999999997 333 22222 4789999999999999 999999999
Q ss_pred cEEEEec-CCCCccccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC----
Q 005342 464 THKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---- 534 (701)
Q Consensus 464 ~i~vwd~-~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~---- 534 (701)
.|++||+ .+ +.... + .+ |...|.+++|+ ++.+++++ |+.|++||+++
T Consensus 80 ~i~~wd~~~~---------------------~~~~~--~-~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 80 EILKVDLIGS---------------------PSFQA--L-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp CEEEECSSSS---------------------SSEEE--C-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred eEEEEEeccC---------------------CceEe--c-cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence 9999965 33 33322 2 35 88999999999 99999999 99999999987
Q ss_pred -----CcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-Cc--eEEeecCCCCCeEEEEEec-CCCEEEEEe
Q 005342 535 -----FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSG 605 (701)
Q Consensus 535 -----~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~-~~--~~~~l~~h~~~V~~v~~sp-dg~~l~s~s 605 (701)
++.+..+. +...+.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 77777776 88899999999996 99999999999999988 54 3334456888999999999 999999999
Q ss_pred CCCeEEEEECCCC------eeeeeeeeeeccCCCC------CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 606 ADAQLCVWDAVGW------KKLCSKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 606 ~D~~I~vwd~~~g------~~~~~~~l~~~~~~~~------~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
.||.|++|++..+ +. ...+. +|. .+...|++++|+|++++|+++ .||.|++||+.+++.+.
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSK--RFAFR----CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTT--CEEEE----CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCcEEEEEEcCCCccccccc--ceeee----cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 9999999999875 22 12222 221 012589999999999999996 79999999999999988
Q ss_pred eeee-----eeEEE
Q 005342 673 QVLL-----ISHIM 681 (701)
Q Consensus 673 ~l~~-----i~~~~ 681 (701)
.+.+ |++++
T Consensus 288 ~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 288 NFAKFNEDSVVKIA 301 (342)
T ss_dssp ECCCCSSSEEEEEE
T ss_pred hhhcccCCCceEec
Confidence 8764 66666
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-28 Score=264.32 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=208.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.+++|++ ..+++++.|+.|++|++. +++...... ..|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~----~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~---- 163 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNAD----SGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV---- 163 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETT----TCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEET----
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCC----CCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC----
Confidence 45566665 568889999999999998 565444221 237889999999999999999999999999965
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCC-CCcEEEEecCCCCCeEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFI 552 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~ 552 (701)
.+++.+.. + .+|...|.+++|+++++++++ ||.|++||++ .+..+..+.+|...|.+++
T Consensus 164 -----------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 164 -----------------ESQTKLRT-M-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp -----------------TTCCEEEE-E-CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred -----------------cCCeEEEE-e-cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 44454432 2 478999999999988999999 9999999998 4667888899999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC-EEEEEe--CCCeEEEEECCCCeeeeeeeeee
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s--~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
|+|++ ++++|+.||.|++||+++++.+..+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++... .+.
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~--~~~- 301 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN--TVD- 301 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE--EEE-
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE--EEe-
Confidence 99999 999999999999999999999999999999999999999764 666765 79999999999976432 222
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEE--E-ecCeEEEEECCCCceeeee--ee----eeEEEEEeeE
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQV--LL----ISHIMFVQIV 686 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~s--g-~Dg~I~iwd~~~g~~~~~l--~~----i~~~~fs~~~ 686 (701)
++ ..|.+++|+|+++++++ | .||.|++||+.+++..... .+ |++++|+|+.
T Consensus 302 ---~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 302 ---AG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp ---CS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred ---CC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 22 78999999999999998 4 6999999999997765553 33 9999999864
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=281.48 Aligned_cols=241 Identities=8% Similarity=-0.004 Sum_probs=182.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDS 386 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~ 386 (701)
++|+ |...++++ ++|...|+ +++|+|++.++++.+|+. ++... +.
T Consensus 37 ~TV~--d~~~~~~l---~gh~~~v~--~V~FsPdg~~~~~~~~~~---~~~~~----------~~--------------- 81 (588)
T 2j04_A 37 ISIG--QPKYAKDI---NCNSKNLF--HVKEFPLEFENKLDFELA---QQNGL----------LN--------------- 81 (588)
T ss_dssp EEEE--EECCCSCC---SSBGGGTE--EEEEECCCCCCTTTTSCC---CSSCS----------ST---------------
T ss_pred ceee--ccccccee---cCCCccEE--EEEECCCCCcceEEEEeC---CCceE----------ee---------------
Confidence 5666 55555444 79999999 999999875655555543 32222 00
Q ss_pred ccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCC-----CCEEEEEEecCCCEEEEEE
Q 005342 387 SCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-----GRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 387 ~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~-----~~v~~l~~spdg~~l~s~s 460 (701)
..|.. |.+++|||||+.||+++.||.|++|+.. . +.. ... |. ..|.+++|||||++|++|+
T Consensus 82 ---~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~----~--~l~---~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 82 ---SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN----K--MLT---NLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp ---TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT----E--EEE---ECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred ---cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC----c--eee---ecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 04455 9999999999999999999999999964 2 222 112 33 3699999999999999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCe-EEeecc---cCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDI---AADPKDSISCFALR-GSHLFSAS-GGKISIFSLET 534 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~---~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~ 534 (701)
.||+|++||+.++.. ...+ +....+ ..+|...|.+++|+ +. +++++ |+.|++||+.+
T Consensus 149 ~DGtVkIWd~~~~~l----------------~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 149 EDGELQFFSIRKNSE----------------NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp TTSEEEEEECCCCTT----------------TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCS
T ss_pred CCCEEEEEECCCCcc----------------ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCC
Confidence 999999997743210 0000 000112 14688999999999 44 77777 99999999988
Q ss_pred CcE---EEEe-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE--ecCCCEEEEEeCC
Q 005342 535 FQT---LATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--SLSLNVLVSSGAD 607 (701)
Q Consensus 535 ~~~---~~~~-~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~--spdg~~l~s~s~D 607 (701)
+.. .+++ .+|...|.+++|+ | .+|+++ +++|++||+.+++......||.+.|..++| +||+..+++++.|
T Consensus 212 ~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 212 SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred CccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 773 3566 4788899999999 6 888887 699999999988774444489999999999 9999999999999
Q ss_pred CeEEEEECC
Q 005342 608 AQLCVWDAV 616 (701)
Q Consensus 608 ~~I~vwd~~ 616 (701)
|+ ++|...
T Consensus 289 G~-klw~~d 296 (588)
T 2j04_A 289 SY-KVLLED 296 (588)
T ss_dssp EE-EEEESS
T ss_pred CC-EEEeec
Confidence 99 999975
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=254.46 Aligned_cols=253 Identities=14% Similarity=0.179 Sum_probs=203.9
Q ss_pred CcccccccCccceeEEEe--ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCccc
Q 005342 307 DKLKFPSMDKSRLLSLIK--QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDA 377 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~--~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (701)
++|++||+.++++++.+. +|...|. +++|+|+ +.|++|++||+.+++++.. +.
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~--~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~----------~~------ 106 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN----------MT------ 106 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----------EE------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEE--EEEECCCCCEEEEEECCCcEEEeecCCceeEEE----------ec------
Confidence 899999999999998876 5666788 9999999 8999999999999988777 33
Q ss_pred ccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 378 SSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 378 s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
+|.. +.+ +++++..+++|+.++.+++|+.. ....... ...+|...+.++.++++++++
T Consensus 107 -------------~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 107 -------------SHSARVGS--LSWNSYILSSGSRSGHIHHHDVR----VAEHHVA--TLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp -------------CCSSCEEE--EEEETTEEEEEETTSEEEEEETT----SSSCEEE--EEECCSSCEEEEEECTTSSEE
T ss_pred -------------CccceEEE--eecCCCEEEEEecCCceEeeecC----CCceeEE--EEcCccCceEEEEEcCCCCEE
Confidence 4444 444 55667899999999999999987 3222211 223588999999999999999
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEE--EEe-CCeEEEE
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLF--SAS-GGKISIF 530 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~--s~s-dg~I~iw 530 (701)
++++.||.|++||+.++.. . ..... ....+...|.+++++ +..+. +++ ++.|++|
T Consensus 166 ~s~~~d~~i~iwd~~~~~~----------------~-~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEG----------------G-WVPLQ--TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp EEEETTSCEEEEESSCBTT----------------B-SCCSE--EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred EEEecCcceeEEECCCCcc----------------c-cccee--eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 9999999999998754321 0 00111 113577889999998 44443 444 7999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE--eCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 005342 531 SLETFQTLATFANPPPIATYFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 607 (701)
Q Consensus 531 d~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g--s~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D 607 (701)
|........... +...+..+.++|++ .++++ +.|+.|++||+++++.+.++.+|.+.|++++|+|||++|||||.|
T Consensus 227 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 227 NVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 999888776665 67789999999999 55544 489999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCC
Q 005342 608 AQLCVWDAVGW 618 (701)
Q Consensus 608 ~~I~vwd~~~g 618 (701)
++|+|||+...
T Consensus 306 ~~v~iWd~~~~ 316 (318)
T 4ggc_A 306 ETLRLWRCFEL 316 (318)
T ss_dssp TEEEEECCSCC
T ss_pred CeEEEEECCCC
Confidence 99999999764
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-28 Score=257.93 Aligned_cols=262 Identities=13% Similarity=0.063 Sum_probs=204.1
Q ss_pred EEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
..+.+|.+.|. +++|+|+ +.|++|++||+.++..... ....+.+|.
T Consensus 5 ~~~~gH~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------~~~~~~~~~ 57 (351)
T 3f3f_A 5 PFDSGHDDLVH--DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-------------------------LSDSWRAHD 57 (351)
T ss_dssp CEECCCSSCEE--EEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-------------------------EEEEEECCS
T ss_pred ccCccccccee--EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-------------------------ecceeccCC
Confidence 35689999999 9999999 7899999999987654322 011245788
Q ss_pred c-eEEEEEcC--CCCeEEEEcCCCcEEEEeccccCCCC--ceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcEE
Q 005342 394 Q-SRESTSLP--DADSAVCAKSLEKSVNLKLQLINEPS--ECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHK 466 (701)
Q Consensus 394 ~-V~~l~~sp--dg~~l~s~s~d~~v~iw~~~~~~~~~--~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~ 466 (701)
. |.+++|+| |+++|++|+.||.|++||+....... ...........|...|.+++|+|+ +.++++++.||.|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 8 99999999 69999999999999999997422111 000111123458899999999999 99999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCCCCcE--E
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQT--L 538 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~~~~~--~ 538 (701)
+||+.+.... ..+ ...............|...+.+++|+ +..+++++ ++.+.+|+...++. +
T Consensus 138 iwd~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 138 LYDALEPSDL-----RSW-----TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEECSSTTCT-----TCC-----EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EecCCChHHh-----ccc-----cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9998655421 000 00000000000113577889999997 67888888 89998888877764 7
Q ss_pred EEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCCC-------------------------------------
Q 005342 539 ATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCTK------------------------------------- 576 (701)
Q Consensus 539 ~~~~~~~~~i~~l~~spdg-----~l~~gs~dg~I~iwd~~~~------------------------------------- 576 (701)
..+.+|...|++++|+|++ ++++|+.||.|++||++++
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 7788899999999999995 7999999999999999874
Q ss_pred ---------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 577 ---------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 577 ---------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
+.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 6677888999999999999999999999999999999999875
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.9e-29 Score=270.91 Aligned_cols=247 Identities=15% Similarity=0.162 Sum_probs=209.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD 381 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D 381 (701)
+.|++||..+++++..+.+|.+.|. +++|.++ +.|++|++||+.++++...+
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------------- 209 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTL--------------------- 209 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEESSSCCEEEEE---------------------
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEE--EEEECCCEEEEEcCCCeEEEEECCCCcEEEEE---------------------
Confidence 8999999999999999999999999 9999766 88999999999999877662
Q ss_pred CCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 382 DSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 382 ~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
.+|.. |.+++|++ ..+++|+.||.|++||+. .+..........+|...|.+++| +++++++|+
T Consensus 210 --------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 210 --------IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA----SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp --------CCCCSCEEEEECCT--TEEEEEETTSCEEEEECS----SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred --------cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC----CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 35666 99999975 599999999999999997 33322211123468899999999 788999999
Q ss_pred CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 461 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 461 ~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
.||.|++||+ .+++.+.. + .+|...|.+++++++++++|+ ||.|++||+++++.+.
T Consensus 274 ~dg~i~vwd~---------------------~~~~~~~~-~-~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 274 GDRTIKVWNT---------------------STCEFVRT-L-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 330 (435)
T ss_dssp TTSEEEEEET---------------------TTCCEEEE-E-ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCeEEEEEC---------------------CcCcEEEE-E-cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 9999999965 44554432 2 368889999999988999999 9999999999999999
Q ss_pred EecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 005342 540 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 609 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~---------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~ 609 (701)
.+.+|...|.++++ ++ ++++|+.||.|++||+.++. .+..+.+|.+.|++++| ++++|++|+.||+
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 99999999999999 67 99999999999999998766 78889999999999999 7889999999999
Q ss_pred EEEEECCCCe
Q 005342 610 LCVWDAVGWK 619 (701)
Q Consensus 610 I~vwd~~~g~ 619 (701)
|++||+.++.
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999999864
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2e-28 Score=263.75 Aligned_cols=266 Identities=13% Similarity=0.099 Sum_probs=209.3
Q ss_pred eEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~ 472 (701)
...++++|+...++ +++.||.|++|++.. .++.........+|...|.+++|+| ++++|++|+.||.|++||+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~---~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGK---TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTC---CEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECcc---CCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 44578888876544 578899999999963 2221110112346899999999999 999999999999999998754
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCCcEEEEe--cCCCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPP 546 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~~~~~~~--~~~~~ 546 (701)
+.... .....+.. + .+|...|.+++|+ + .++++++ ||.|++||+++++.+..+ .+|..
T Consensus 114 ~~~~~--------------~~~~~~~~-~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 177 (402)
T 2aq5_A 114 GGLVL--------------PLREPVIT-L-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD 177 (402)
T ss_dssp TCCSS--------------CBCSCSEE-E-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS
T ss_pred CCCcc--------------ccCCceEE-e-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC
Confidence 32100 00011111 2 3789999999999 4 6899999 999999999999999999 78999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee-cCCCCC-eEEEEEecCCCEEEEE---eCCCeEEEEECCCCee
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKK 620 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l-~~h~~~-V~~v~~spdg~~l~s~---s~D~~I~vwd~~~g~~ 620 (701)
.|.+++|+|++ ++++|+.||.|++||+++++.+..+ .+|.+. +.+++|+|++++|++| +.|+.|++||+.+++.
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 99999999999 9999999999999999999999988 788875 8999999999999999 7999999999998653
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCce-ee---eee--e-eeEEEEEeeE
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TS---QVL--L-ISHIMFVQIV 686 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~-~~---~l~--~-i~~~~fs~~~ 686 (701)
. +......+. ..+.+++|+|+++++++ | .|+.|++||+.+++. +. .+. . |++++|+|+.
T Consensus 258 ~----~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~ 325 (402)
T 2aq5_A 258 P----LSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR 325 (402)
T ss_dssp C----SEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG
T ss_pred C----ceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc
Confidence 1 111111333 77999999999999975 6 699999999998883 33 333 2 9999999874
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-29 Score=288.63 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=203.8
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCc
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~ 464 (701)
.+.+|.+ |++++|+|+|++|++|+.||.|++|++. .+....+. ...+|.+.|.+++|+|+ ++++++|+.||.
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~----~~~~~~~~-~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecC----CCCCccce-eccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 3578999 9999999999999999999999999986 32222211 33568999999999998 999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCe--EEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCc-
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQ- 536 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~- 536 (701)
|++||+ .++. ... ...+|...|.+++|+ ++.+++|+ ||.|++||+.++.
T Consensus 79 I~vwd~---------------------~~~~~~~~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 79 VLIWKE---------------------ENGRWSQIA--VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEEEEE---------------------ETTEEEEEE--EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred EEEEEC---------------------CCCcccccc--cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 999976 3333 222 114788999999998 56899999 9999999998773
Q ss_pred -EEEEecCCCCCeEEEEEcC-------------CC-eEEEEeCCCcEEEEeCCCC----ceEEeecCCCCCeEEEEEecC
Q 005342 537 -TLATFANPPPIATYFILLP-------------QD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 537 -~~~~~~~~~~~i~~l~~sp-------------dg-~l~~gs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~v~~spd 597 (701)
....+.+|...|.+++|+| ++ .+++|+.||.|++||++++ .....+.+|.+.|++++|+|+
T Consensus 136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 4456678999999999999 47 9999999999999999876 566788899999999999999
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 598 ---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 598 ---g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
++++++|+.||+|++||+.++.......+. ...+|. ..|++++|+|+|+++++| .||.|++||+.++..
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~---~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL-KEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS-SSSCCS---SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEe-ccCCCC---CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 899999999999999999987432222222 112343 889999999999999996 899999999986543
No 107
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=279.51 Aligned_cols=259 Identities=11% Similarity=-0.006 Sum_probs=187.2
Q ss_pred cCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecC------CCEEEEEECCCcEEEEecCCC
Q 005342 401 LPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 401 spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spd------g~~l~s~s~dg~i~vwd~~~~ 473 (701)
+|+++.+++++.|++|+||++. ++++.. .......|.+.|.+++|+|+ +.+|++++.||+|++||+..+
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~----~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMN----TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEE----TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEcc----CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 4455566667789999999997 443211 01111246788999999997 579999999999999998554
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCc-EEEEecCCCCCeEE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 550 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~ 550 (701)
....+.. ...... ... + .+|...|++++|+ +..|++|+ ||+|++||++++. ....+.+|...|++
T Consensus 246 ~~~~~~~--------~~~~~p-~~~--l-~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 246 ATDVHVF--------KMCEKP-SLT--L-SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SSSSSEE--------ECCCSC-SEE--E-CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred ccccccc--------eeecCc-eEE--E-EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 2110000 000000 011 2 3688999999999 77999999 9999999998764 45668899999999
Q ss_pred E--EEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 551 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 551 l--~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
+ +++|+| +||+|+.|++|++||+++++.+..+.+|.. .|.+++|+|+++.+++++.|++|++||++++... .
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~--~ 391 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV--H 391 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC--E
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc--e
Confidence 9 578886 889999999999999999888777777754 5889999999999999999999999999987522 2
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee------e---eeEEEEEee
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL------L---ISHIMFVQI 685 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~------~---i~~~~fs~~ 685 (701)
.+. +|. ..|++|+|||+|++|++| .|++|++||+..+ .+..+. . +..++|||.
T Consensus 392 ~l~----gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 392 PLV----SRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp EEE----ECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS
T ss_pred eee----cCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC
Confidence 233 565 899999999999999996 7999999998654 333221 1 557777765
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-28 Score=257.71 Aligned_cols=245 Identities=11% Similarity=0.086 Sum_probs=196.9
Q ss_pred cceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCC--ccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 317 SRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTV--SNLRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 317 ~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
|+++..+.+|.+.|. +++|+|+ +.|++|++||+..+ .....
T Consensus 1 G~~~~~~~~h~~~v~--~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---------------------------- 50 (379)
T 3jrp_A 1 GSMVVIANAHNELIH--DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT---------------------------- 50 (379)
T ss_dssp ----CCEEECCCCEE--EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE----------------------------
T ss_pred CCccEEecCCcccEE--EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE----------------------------
Confidence 456677899999999 9999999 68999999999843 33332
Q ss_pred cccCCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECC
Q 005342 388 CFNDNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQT 462 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~d 462 (701)
+.+|.. |.+++|+|+ +++|++|+.||.|++||+. .++...+. ....|...|.+++|+|+ +.++++++.|
T Consensus 51 -~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 51 -LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp -ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred -ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC----CCceeEee-eecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 357777 999999987 9999999999999999998 55422222 23357899999999999 9999999999
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---------------CCEEEEEe-CCe
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---------------GSHLFSAS-GGK 526 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---------------~~~l~s~s-dg~ 526 (701)
|.|++||+..... ..... + ..|...|.+++|+ +.++++++ ||.
T Consensus 125 ~~i~v~d~~~~~~------------------~~~~~--~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 125 GKVSVVEFKENGT------------------TSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp SEEEEEECCTTSC------------------CCEEE--E-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred CcEEEEecCCCCc------------------eeeEE--e-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 9999998743210 01111 1 3678899999997 36788888 999
Q ss_pred EEEEeCCCCc----EEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEE
Q 005342 527 ISIFSLETFQ----TLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLA 593 (701)
Q Consensus 527 I~iwd~~~~~----~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~ 593 (701)
|++||++++. ....+.+|...|.+++|+|+ + ++++++.||.|++||++++. .+.....|...|++++
T Consensus 184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence 9999997764 55677889999999999999 9 99999999999999998864 2223334888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
|+|+|++|++++.||.|++|++..+
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999999999999999843
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=259.83 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=205.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc---e-eEeecCC---------------------------------
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---C-RTLLLPD--------------------------------- 437 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~---~-~~l~~~~--------------------------------- 437 (701)
+.+++|+|||++|+++ .++.|++||+. +++ . ..+....
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQ----SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEE----TTTEEEEEEEEECCC---------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECC----CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 6789999999977666 46899999987 443 1 1111000
Q ss_pred -----------------CCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee
Q 005342 438 -----------------NSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN 499 (701)
Q Consensus 438 -----------------~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~ 499 (701)
..|.+.|.+++|+|+|++| ++++.||.|++||+. ..++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~-------------------~~~~~~~~~ 142 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVD-------------------KTSKNVLKL 142 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEEC-------------------SSSSSCEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECc-------------------CCCCceeee
Confidence 1244479999999999996 788889999999873 113332221
Q ss_pred cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE----EecCCCCCeEEEEEcCC---C-eEEEEeCCCcE
Q 005342 500 DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSI 568 (701)
Q Consensus 500 ~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~----~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I 568 (701)
.-...|...|.+++|+ +.+|++++ +|.|++|++.++.... .+.+|...|++++|+|+ + +|++|+.|+.|
T Consensus 143 ~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i 222 (450)
T 2vdu_B 143 RKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI 222 (450)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred eecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence 1101467889999999 88999999 8999999998876544 67789999999999999 8 99999999999
Q ss_pred EEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC-----CC---------
Q 005342 569 LVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-----GL--------- 633 (701)
Q Consensus 569 ~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~-----~~--------- 633 (701)
++||+++++.+.. +.+|.+.|++++|+ ++++|++|+.|++|++||+.+++............ .|
T Consensus 223 ~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 223 KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 9999999988877 56899999999999 99999999999999999999987543322110000 00
Q ss_pred --CCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEEC--CCC---ceeeeeee---eeEEEEEee
Q 005342 634 --VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTL---NHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 634 --~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~--~~g---~~~~~l~~---i~~~~fs~~ 685 (701)
......|.+++|+|++++++++ .|+.|+||++ .++ +.+..+.+ |.+++|+|.
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 0112678999999999999985 6899999999 666 66777765 999999884
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.8e-27 Score=253.10 Aligned_cols=291 Identities=16% Similarity=0.158 Sum_probs=225.7
Q ss_pred CcccccccC--cc--ceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 307 DKLKFPSMD--KS--RLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 307 ~~i~iwd~~--~~--~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
+.+.+|.++ ++ +.+..+..+. .+. +++|+|+ +.|++|++||+.+++....+
T Consensus 99 ~~~~l~~~d~~~~~~~~~~~~~~~~-~~~--~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------------- 160 (433)
T 3bws_A 99 LNEKLIALDKEGITHRFISRFKTGF-QPK--SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS--------------- 160 (433)
T ss_dssp GTTCEEECCBTTCSEEEEEEEECSS-CBC--CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC---------------
T ss_pred CceEEEEECCCCCcceEEEEEcCCC-Cce--EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec---------------
Confidence 334455443 35 5566665543 466 8999998 67889999999999877652
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~ 454 (701)
....+.+|.. |++++|+|+++++++++.|+.|++||+. +++... ....|...+.+++|+|+++
T Consensus 161 ---------~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~----~~~~~~---~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 161 ---------PPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK----TLAYKA---TVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp ---------CCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT----TCCEEE---EEECSSSSEEEEEEETTTT
T ss_pred ---------CcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC----CceEEE---EEcCCCCCeeEEEEcCCCC
Confidence 1112457888 9999999999999999999999999997 444433 1124678899999999999
Q ss_pred EEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--------
Q 005342 455 FLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------- 523 (701)
Q Consensus 455 ~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-------- 523 (701)
.+++++ .|+.|++||+ .+++.... + .....+.+++|+ |+++++++
T Consensus 225 ~l~~~~~~~~~i~~~d~---------------------~~~~~~~~-~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 225 LVYCSNWISEDISVIDR---------------------KTKLEIRK-T--DKIGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EEEEEETTTTEEEEEET---------------------TTTEEEEE-C--CCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EEEEEecCCCcEEEEEC---------------------CCCcEEEE-e--cCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 886555 6899999955 55554432 2 234568999998 77887776
Q ss_pred -CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE
Q 005342 524 -GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 600 (701)
Q Consensus 524 -dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~ 600 (701)
||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++
T Consensus 281 ~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY 358 (433)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE
T ss_pred CCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE
Confidence 5799999999998877764 55678999999999 55677899999999999998888876 6778999999999998
Q ss_pred EEEEeC---------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE
Q 005342 601 LVSSGA---------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY 663 (701)
Q Consensus 601 l~s~s~---------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw 663 (701)
+++++. ||.|++||+.+++... .+. ++ ..+.+++|+|+|++|+++ .|+.|++|
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~--~~~----~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE--FWE----AG----NQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE--EEE----CS----SSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEE--Eec----CC----CCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 888876 5799999999986432 222 22 678999999999999874 49999999
Q ss_pred ECCC
Q 005342 664 EAPT 667 (701)
Q Consensus 664 d~~~ 667 (701)
++..
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9863
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.3e-28 Score=263.00 Aligned_cols=258 Identities=16% Similarity=0.222 Sum_probs=201.8
Q ss_pred ccCCCc-eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCC----CceeEeecCCCCCCCCEEEEEEecCCC-EEEEEEC
Q 005342 389 FNDNNQ-SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEP----SECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQ 461 (701)
Q Consensus 389 l~~h~~-V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~----~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~ 461 (701)
..+|.. |++++|+|+ +.++++|+.||.|++|++...... +....+ ....+|...|.+++|+|++. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 457888 999999997 789999999999999999742100 001110 02235888999999999998 9999999
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCC-
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF- 535 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~- 535 (701)
||.|++|++..... ....+. .....+|...|.+++|+ +.++++++ ||.|++||++++
T Consensus 203 dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 203 DHTICLWDINATPK-----------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp TSCEEEEETTSCCB-----------------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred CCeEEEEeCCCCCC-----------------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 99999998854211 000000 00113688899999998 67888888 999999999987
Q ss_pred --cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCe
Q 005342 536 --QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQ 609 (701)
Q Consensus 536 --~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D~~ 609 (701)
+.+..+..|...|++++|+|++ ++++|+.||.|++||+++ +..+..+.+|.+.|++++|+|+++ +|++++.|++
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 5777788899999999999998 789999999999999998 567888999999999999999985 7999999999
Q ss_pred EEEEECCCCeeee---------eeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE-ecCeEEEEECCCC
Q 005342 610 LCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI-HEGQIDVYEAPTL 668 (701)
Q Consensus 610 I~vwd~~~g~~~~---------~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-~Dg~I~iwd~~~g 668 (701)
|++||+....... ...+. ...+|. ..|++++|+|+++ +++++ .||.|+||++.++
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLF-IHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEE-ECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEE-EcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999998732110 02222 223554 8899999999999 77775 7999999999654
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.2e-27 Score=249.62 Aligned_cols=263 Identities=11% Similarity=0.115 Sum_probs=206.3
Q ss_pred ccCCCc-eEEEEEcCC---CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 389 FNDNNQ-SRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 389 l~~h~~-V~~l~~spd---g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
+.+|.. |++++|+|+ |++|++|+.||.|++|++.+ .+..... ...+|...|.+++|+|++++|++++.||.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEE--EEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEE--EeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 678988 999999999 69999999999999999973 1333211 12358899999999999999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe--c--CCEEEEEe-CCeEEEEeCCCCcEEE
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~--s--~~~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
|++||+ .++..... ..|...|.+++| + +.++++++ ||.|++||+++++.+.
T Consensus 110 v~iwd~---------------------~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 110 AKMWDL---------------------SSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEET---------------------TTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred EEEEEc---------------------CCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence 999965 45554432 358899999999 6 77899999 9999999999999988
Q ss_pred EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEee-c-CCCCCeEEEEEecCCCE----EEEEeCCCeEEEE
Q 005342 540 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-K-GHQNRITCLAYSLSLNV----LVSSGADAQLCVW 613 (701)
Q Consensus 540 ~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l-~-~h~~~V~~v~~spdg~~----l~s~s~D~~I~vw 613 (701)
.+..+. .+.++.+.++ .+++++.++.+++||++........ . .+...+.++++.+++.. +++++.|+.|++|
T Consensus 166 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 166 VLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp EEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 888554 5666666644 7888899999999999876443222 1 24456677777766554 9999999999999
Q ss_pred ECCCCee-eeeeeeeeccCCCCC---------CCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----ee
Q 005342 614 DAVGWKK-LCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----IS 678 (701)
Q Consensus 614 d~~~g~~-~~~~~l~~~~~~~~~---------~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~ 678 (701)
|+..+.. .....+. +|.. +...|++++|+|++++|+++ .||.|++||+.+++++..+.+ |+
T Consensus 244 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 244 YINPPNPAKDNFTFK----CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIS 319 (368)
T ss_dssp ESSCSCHHHHSEEEE----CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred ecCCCCccccceeee----eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCce
Confidence 9998632 1112222 3320 00279999999999999996 799999999999999999887 99
Q ss_pred EEEEEeeE
Q 005342 679 HIMFVQIV 686 (701)
Q Consensus 679 ~~~fs~~~ 686 (701)
+++|+|+.
T Consensus 320 ~~~~s~~g 327 (368)
T 3mmy_A 320 ACCFNHNG 327 (368)
T ss_dssp EEEECTTS
T ss_pred EEEECCCC
Confidence 99999864
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=259.14 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=194.6
Q ss_pred CcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEE
Q 005342 327 MDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRES 398 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l 398 (701)
..+|. +++|||| +.|++|+ |...+ +++.+|.. |+++
T Consensus 15 ~~~v~--sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------------~~l~gh~~~v~~V 58 (588)
T 2j04_A 15 EDWKN--NLTWARDGTLYLTTFPDISIG--QPKYA--------------------------------KDINCNSKNLFHV 58 (588)
T ss_dssp SSSSC--CEEECTTSCEEEECSSSEEEE--EECCC--------------------------------SCCSSBGGGTEEE
T ss_pred hccEE--EEEECCCCCEEEEEcCCceee--ccccc--------------------------------ceecCCCccEEEE
Confidence 46788 9999999 8999999 64332 23457888 9999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g 478 (701)
+|+|+| .++.+.+|+.+ ... .+ .. .|...|.+++|||||..|++++.||.+++||.
T Consensus 59 ~FsPdg-------~~~~~~~~~~~----~~~--~~--~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~-------- 114 (588)
T 2j04_A 59 KEFPLE-------FENKLDFELAQ----QNG--LL--NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKD-------- 114 (588)
T ss_dssp EEECCC-------CCCTTTTSCCC----SSC--SS--TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEET--------
T ss_pred EECCCC-------CcceEEEEeCC----Cce--Ee--ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--------
Confidence 999998 45555555543 111 11 11 35788999999999999999999999999963
Q ss_pred ccccceeeEEeeCCCCeEEeecccCCCC-----CCeEEEEec--CCEEEEEe-CCeEEEEeCCCCc-------EEEEe--
Q 005342 479 EENVNMESQLYQPSSKLVMTNDIAADPK-----DSISCFALR--GSHLFSAS-GGKISIFSLETFQ-------TLATF-- 541 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~-------~~~~~-- 541 (701)
++ ++.. + . |. ..+.+++|| |++|++|+ ||+|++||+.++. .+.++
T Consensus 115 -------------~~--~l~~-l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 115 -------------NK--MLTN-L-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL 176 (588)
T ss_dssp -------------TE--EEEE-C-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred -------------Cc--eeee-c-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence 11 2221 2 2 33 359999999 99999999 9999999998875 35676
Q ss_pred --cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce---EEee-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 005342 542 --ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT---KAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 615 (701)
Q Consensus 542 --~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~---~~~l-~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~ 615 (701)
.+|...|.+++|+||| +++++.|+.|++||+.++.. .+++ .+|...|.+++|+ |+.||+++ +++|++||+
T Consensus 177 ~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~ 252 (588)
T 2j04_A 177 SDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDL 252 (588)
T ss_dssp SCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEET
T ss_pred ccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEEC
Confidence 6777899999999999 99999999999999988773 3567 4788999999999 68999887 699999999
Q ss_pred CCCeeeeeeeeeeccCCCCCCCCCeEEEEE--cCCCCEEEEE-ecCeEEEEEC
Q 005342 616 VGWKKLCSKFLHSFQTGLVPETTIVNHIQF--HPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 616 ~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~--spdg~~l~sg-~Dg~I~iwd~ 665 (701)
.+++.. . ...+|. ..|+.++| +||+..++++ .||+ ++|..
T Consensus 253 ~~~~~~---~---~~~gh~---~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 253 KNYSIS---S---LKTGSL---ENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp TTTEEE---E---EECSCC---SCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred CCCeEE---E---EEcCCC---ceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 997531 1 222565 89999999 9999999987 6888 88876
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=253.77 Aligned_cols=247 Identities=10% Similarity=-0.002 Sum_probs=188.1
Q ss_pred ccCCCc-eEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
..+|.. |++++|+|+|++| ++|+.||.|++|++.... ......+. ...+...|.+++|+|+|++|++|+.+|.+.
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRK--RFCFSKRPNAISIAEDDTTVIIADKFGDVY 174 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeee--cccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence 457777 9999999999996 899999999999996100 12222221 113678899999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCe-EEeecccCCCCCCeEEEEec-C---C-EEEEEe-CCeEEEEeCCCCcEEE
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR-G---S-HLFSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~l~~s-~---~-~l~s~s-dg~I~iwd~~~~~~~~ 539 (701)
+|++.... ... .... + .+|...|.+++|+ . . +|++++ |+.|++||+++++.+.
T Consensus 175 ~~~~~~~~------------------~~~~~~~~-~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 175 SIDINSIP------------------EEKFTQEP-I-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp EEETTSCC------------------CSSCCCCC-S-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EEecCCcc------------------ccccccee-e-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 99774321 110 1101 2 3688899999999 5 4 788888 9999999999998887
Q ss_pred E-ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------------------------CCCeEEE
Q 005342 540 T-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------------------------QNRITCL 592 (701)
Q Consensus 540 ~-~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~v 592 (701)
. +.+|...|++++|+ ++ ++++|+.|+.|++||+++++.+..+..+ ...|.++
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 7 55899999999999 99 9999999999999999999988877632 3578999
Q ss_pred EEecCCCEEEEEe-CCCeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe-------cCeEEE
Q 005342 593 AYSLSLNVLVSSG-ADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-------EGQIDV 662 (701)
Q Consensus 593 ~~spdg~~l~s~s-~D~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~-------Dg~I~i 662 (701)
+|+|+++++++++ .|+.|++|++ ..+.. ...+..+. ++ ..|.+++|+|++.+++++. ++.|.+
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~~~~-~~----~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD--LALKQIIT-FP----YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTC--EEEEEEEE-CS----SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCc--eeeccEec-cC----CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 9999999999998 8999999999 44311 12222222 33 6799999999654444332 445788
Q ss_pred EECC
Q 005342 663 YEAP 666 (701)
Q Consensus 663 wd~~ 666 (701)
|.+.
T Consensus 387 ~~~~ 390 (450)
T 2vdu_B 387 IEYN 390 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=249.93 Aligned_cols=254 Identities=10% Similarity=0.003 Sum_probs=195.1
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342 399 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (701)
Q Consensus 399 ~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g 478 (701)
.+.+++.++++|+.||.|++||+. .++... .+ ....|.++.|+|+ +++++.|+.+++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~----~~~~~~-~~----~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLK----DSKTIT-TI----TTPNPRTGGEHPA---IISRGPCNRLLLLYPGN------ 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEES----SSSCEE-EE----EEECCCTTCCCCS---EEEECSTTEEEEEETTT------
T ss_pred hhcCCCCEEEEECCCCcEEEEECC----CCcEEE-EE----ecCCceeeeeCCc---eEEecCCCeEEEEEccC------
Confidence 355788999999999999999998 444322 11 1355677788888 89999999999998744
Q ss_pred ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEEeCCCCcEEEEecC-CCCCeEEEE
Q 005342 479 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFI 552 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~ 552 (701)
.+.+|+..++.++.. +..+|...|.+++++ ++++++++ ||.|++||+++++....... +...+++++
T Consensus 105 ------~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 105 ------QITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ------EEEEEETTTCCEEEE-EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred ------ceEEeecCCcceeEE-eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 256788888885543 324677889999997 67899999 99999999999988776643 455799999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceE-EeecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~-~~l~~-h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
|+|+| ++++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++++ +|++||+++++.. ..+..+
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~--~~~~~~ 254 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGT--LAYPTY 254 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTC--BSSCCC
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcc--eeeccc
Confidence 99999 9999999999999999999887 78888 99999999999999999999954 9999999987532 122211
Q ss_pred cCCCCCCCCCe--EEEEEcCCCCEEEEE-e-cCeEEEEECCCCceeeeeeeeeEEEEEe
Q 005342 630 QTGLVPETTIV--NHIQFHPDQIHLLSI-H-EGQIDVYEAPTLNHTSQVLLISHIMFVQ 684 (701)
Q Consensus 630 ~~~~~~~~~~v--~~v~~spdg~~l~sg-~-Dg~I~iwd~~~g~~~~~l~~i~~~~fs~ 684 (701)
. .|. ..+ .+++|+|+|++|+++ . |+.++||++.++........+..++|+|
T Consensus 255 ~-~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 3lrv_A 255 T-IPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS 309 (343)
T ss_dssp B-C--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC--
T ss_pred c-ccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCc
Confidence 1 121 223 479999999999995 4 9999999997665433332244444444
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.6e-26 Score=241.74 Aligned_cols=263 Identities=14% Similarity=0.105 Sum_probs=209.3
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE-EEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA-VCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l-~s~s~d~~v~iw 419 (701)
+.|++|++||+.+++.+..+ .+|..+.+++|+|+|+++ ++++.|+.|++|
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~-----------------------------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATI-----------------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE-----------------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEe-----------------------------ecCCCcceEEECCCCCEEEEECCCCCeEEEE
Confidence 56899999999998877662 234448899999999977 677799999999
Q ss_pred eccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 420 KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
|+. ++++.... + +...+.+++|+|+|+++++++ .++.|++||+ .+++...
T Consensus 60 d~~----~~~~~~~~-~---~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~---------------------~~~~~~~ 110 (391)
T 1l0q_A 60 DTA----TNNVIATV-P---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT---------------------TSNTVAG 110 (391)
T ss_dssp ETT----TTEEEEEE-E---CSSSEEEEEECTTSSEEEEEETTTTEEEEEET---------------------TTTEEEE
T ss_pred ECC----CCeEEEEE-E---CCCCccceEECCCCCEEEEEECCCCEEEEEEC---------------------CCCeEEE
Confidence 997 55544322 1 234899999999999886665 4699999955 5555443
Q ss_pred ecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEe
Q 005342 499 NDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHC 572 (701)
Q Consensus 499 ~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd 572 (701)
. + .+...+.+++|+ |+.+ ++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||
T Consensus 111 ~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 111 T-V--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp E-E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred E-E--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 2 2 234578999999 7766 5666 899999999999988888754 457999999999 55 6788899999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 573 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 573 ~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s---~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
+++++.+..+. +...+.+++|+|+++++++++ .++.|++||+.+++... . +. .+ ..+.+++|+|+|
T Consensus 187 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~--~---~~-~~----~~~~~~~~s~dg 255 (391)
T 1l0q_A 187 TVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--R---IP-VG----PDPAGIAVTPDG 255 (391)
T ss_dssp TTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--E---EE-CC----SSEEEEEECTTS
T ss_pred CCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE--E---Ee-cC----CCccEEEEccCC
Confidence 99998888776 556789999999999988887 68999999999975332 2 22 33 557899999999
Q ss_pred CEEE-EE-ecCeEEEEECCCCceeeeeee
Q 005342 650 IHLL-SI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 650 ~~l~-sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
++++ ++ .|+.|++||+.+++.++.++.
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 9885 44 699999999999999888865
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-26 Score=236.52 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=182.3
Q ss_pred CcccccccCcc---ceeEEEeecCcceeeeEEEEccCCCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCC
Q 005342 307 DKLKFPSMDKS---RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS 383 (701)
Q Consensus 307 ~~i~iwd~~~~---~~~~~l~~h~~~v~~~~l~fspds~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~ 383 (701)
..|++|+...+ +++++++.|...|. .+.|+||..+ -+. +.. |+
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~-~~~---------~~~------------~~---------- 108 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVL--QIVPVPDVYN-LVC---------VAL------------GN---------- 108 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEE--EECCCTTCCS-CEE---------EEE------------CS----------
T ss_pred ceEEEcccCCCccceeeEEEeccCceeE--EEEEcCcccc-eee---------eee------------cc----------
Confidence 67999999998 99999999999999 9999997332 111 111 11
Q ss_pred CCCccccCCCc-eEEEEEcCC----CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEE
Q 005342 384 NDSSCFNDNNQ-SRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 384 ~~~~~l~~h~~-V~~l~~spd----g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s 458 (701)
-|.. |++++++|| ++.+++++.+ +.+|++. +++...- ...+|...|..++++|+|+.+.+
T Consensus 109 -------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----~g~lv~s--s~~g~d~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 109 -------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----KRRLVSS--SGTLSDQQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp -------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET----TTEEEEE--ESSSTTCEEEEEEECTTSCEEEE
T ss_pred -------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC----CCcEEEe--cccCCCCcEEEEEECCCCceeee
Confidence 1233 899999999 9999998854 6778774 4432221 11235555555555555554332
Q ss_pred EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeC
Q 005342 459 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSL 532 (701)
Q Consensus 459 ~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~ 532 (701)
. ..|...+..++|+ +..|++++ |++|++||+
T Consensus 174 ~-------------------------------------------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 174 Q-------------------------------------------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp E-------------------------------------------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred e-------------------------------------------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 1 1355556666665 58999999 999999999
Q ss_pred CCCcEEEEecCCC---CCeEEEEEcCCC-eE------------EEEeCCCcEEEEeCCCCceEEee-----cCCCCCeEE
Q 005342 533 ETFQTLATFANPP---PIATYFILLPQD-LF------------AFGFDDSSILVHCPCTKKTKAKL-----KGHQNRITC 591 (701)
Q Consensus 533 ~~~~~~~~~~~~~---~~i~~l~~spdg-~l------------~~gs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~ 591 (701)
++++.++++.+|. ..+.+++|+|+| ++ ++|+.|++|++||..+++.+..+ .||...+.+
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE
T ss_pred CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc
Confidence 9999999998654 357788999999 65 67889999999999999887765 477766554
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCC-eEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~-v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
..+ ++.++|+++.|++|+|||+.+|+.. ..+. +|. .. +.+++|||||++|++| .|++|+|||+
T Consensus 291 g~~--sg~~lASgS~DgTIkIWDl~tGk~l--~tL~----gH~---~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 291 GDV--KDHCAAAILTSGTIAIWDLLLGQCT--ALLP----PVS---DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCSEE--EEEC----CC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ccc--CCCEEEEEcCCCcEEEEECCCCcEE--EEec----CCC---CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 444 4889999999999999999998633 2333 453 44 4569999999999997 8999999996
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.4e-26 Score=249.92 Aligned_cols=257 Identities=10% Similarity=0.115 Sum_probs=201.1
Q ss_pred EEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 321 SLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 321 ~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
.....|.+.|. +++|+|+ +.|+.|++||+.+...... ..+... ....+.+|
T Consensus 122 ~~~~~h~~~v~--~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------~~~~~~---------~~~~~~~h 180 (430)
T 2xyi_A 122 EIKINHEGEVN--RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------PSGECQ---------PDLRLRGH 180 (430)
T ss_dssp EEEEEESSCCS--EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----------TTCCCC---------CSEEEECC
T ss_pred EEEEcCCCcEE--EEEECCCCCcEEEEECCCCcEEEEECCCcccccC----------ccccCC---------CcEEecCC
Confidence 45678999999 9999996 7899999999976422111 000000 12225688
Q ss_pred Cc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEe
Q 005342 393 NQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 469 (701)
Q Consensus 393 ~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd 469 (701)
.. |.+++|+|++. +|++|+.||.|++|++.................+|...|.+++|+| ++..+++++.||.|++||
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence 88 99999999999 9999999999999999742111111110112346889999999999 678899999999999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC-EEEEEe-CCeEEEEeCCC-CcEEEEecCC
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLET-FQTLATFANP 544 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~-~l~s~s-dg~I~iwd~~~-~~~~~~~~~~ 544 (701)
++... ....... + ..|...|++++|+ +. ++++|+ ||.|++||+++ +..+..+.+|
T Consensus 261 ~~~~~------------------~~~~~~~-~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 261 TRNNN------------------TSKPSHT-V-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp TTCSC------------------SSSCSEE-E-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred CCCCC------------------CCcceeE-e-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 74321 0111111 2 3688899999999 55 688888 99999999988 5678888899
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC--------------CceEEeecCCCCCeEEEEEecCCC-EEEEEeCC
Q 005342 545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------------KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGAD 607 (701)
Q Consensus 545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~--------------~~~~~~l~~h~~~V~~v~~spdg~-~l~s~s~D 607 (701)
...|++++|+|++ ++++++.||.|++||+.. .+.+..+.+|...|++++|+|+++ ++++++.|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 9999999999999 799999999999999987 367778889999999999999999 99999999
Q ss_pred CeEEEEECCCC
Q 005342 608 AQLCVWDAVGW 618 (701)
Q Consensus 608 ~~I~vwd~~~g 618 (701)
|.|++|++..+
T Consensus 401 g~i~iw~~~~~ 411 (430)
T 2xyi_A 401 NIMQVWQMAEN 411 (430)
T ss_dssp SEEEEEEECHH
T ss_pred CCEEEeEcccc
Confidence 99999999863
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.7e-25 Score=236.83 Aligned_cols=250 Identities=13% Similarity=0.085 Sum_probs=201.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDAS 378 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (701)
+.|++||+.+++++..+..|.. +. +++|+|+ +.|++|++||+.+++....+ .
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~-~~--~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----------~------- 71 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSN-PM--GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----------P------- 71 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSS-EE--EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----------E-------
T ss_pred CEEEEEECCCCeEEEEeecCCC-cc--eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----------E-------
Confidence 7899999999999999988765 77 9999999 57999999999998877662 1
Q ss_pred cCCCCCCCccccCCCceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE-
Q 005342 379 SGDDSNDSSCFNDNNQSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL- 456 (701)
Q Consensus 379 ~~D~~~~~~~l~~h~~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l- 456 (701)
.|..+.+++|+|+|++++ +++.++.|++||+. +++...... +...+.+++|+|+|+.+
T Consensus 72 ------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~----~~~~~~~~~----~~~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 72 ------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT----SNTVAGTVK----TGKSPLGLALSPDGKKLY 131 (391)
T ss_dssp ------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT----TTEEEEEEE----CSSSEEEEEECTTSSEEE
T ss_pred ------------CCCCccceEECCCCCEEEEEECCCCEEEEEECC----CCeEEEEEe----CCCCcceEEECCCCCEEE
Confidence 222488999999999875 55577999999998 555443221 34578999999999987
Q ss_pred EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE-EEEe-CCeEEEEeC
Q 005342 457 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSL 532 (701)
Q Consensus 457 ~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l-~s~s-dg~I~iwd~ 532 (701)
++++.++.|++||+ .+++.... +. ....+.+++|+ ++.+ ++++ ++.|++||+
T Consensus 132 ~~~~~~~~v~~~d~---------------------~~~~~~~~-~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 132 VTNNGDKTVSVINT---------------------VTKAVINT-VS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEETTTTEEEEEET---------------------TTTEEEEE-EE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeCCCCEEEEEEC---------------------CCCcEEEE-Ee--cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 56677999999965 45554432 21 23467899999 7676 4555 799999999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCC
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGAD 607 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l-~s~s~D 607 (701)
++++....+. +...+.+++|+|+| ++++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|+++ ++++.|
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC
Confidence 9998888776 55678999999999 777777 68999999999999998888765 47899999999977 677889
Q ss_pred CeEEEEECCCCeeee
Q 005342 608 AQLCVWDAVGWKKLC 622 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~ 622 (701)
+.|++||+.+++...
T Consensus 266 ~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 266 NTVSVIDTATNTITA 280 (391)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEE
Confidence 999999999986543
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.2e-26 Score=243.44 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=181.3
Q ss_pred cCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEE-EEECCCcEEE
Q 005342 390 NDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKL 467 (701)
Q Consensus 390 ~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~i~v 467 (701)
.+|.. |++++|+|||++|++|+.++ +++|++. ++.... .. +...+..+.+.++++.++ +++.|+.|++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~----~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH----PVAHIM-SQ----EMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEET----TEEEEE-EE----ECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecC----Ccceee-ee----ecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 57888 99999999999999998875 7899987 443322 11 123577888999988874 5666899999
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCC-cEEEEecCCCC
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPP 546 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~~~ 546 (701)
||. .+++.+.. + .+...|.+++++.+.++++.|+.|++||+.++ +.+..+..
T Consensus 86 Wd~---------------------~~~~~~~~-~--~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--- 138 (355)
T 3vu4_A 86 WDD---------------------VKKQDVSR-I--KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR--- 138 (355)
T ss_dssp EET---------------------TTTEEEEE-E--ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---
T ss_pred EEC---------------------CCCcEEEE-E--ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---
Confidence 955 55554432 2 25668999999966777777999999999988 66666553
Q ss_pred CeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCc----------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342 547 IATYFILLPQD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~~~----------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
+...+++++ . +.++ |+.||.|++||+.++. .+..+.+|.+.|++++|+|+|++||+|+.|+
T Consensus 139 ~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 139 FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 445667777 5 3333 7899999999999865 2678899999999999999999999999999
Q ss_pred e-EEEEECCCCeeeeeeeeeeccCC-CCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCc
Q 005342 609 Q-LCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 669 (701)
Q Consensus 609 ~-I~vwd~~~g~~~~~~~l~~~~~~-~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~ 669 (701)
+ |++||+++++.. ..+..+ |. ..|++++|+|+|++|+++ .|++|+|||+.++.
T Consensus 218 ~~v~iwd~~~~~~~-----~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTEDGVLV-----REFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTTCCEE-----EEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CEEEEEECCCCcEE-----EEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8 999999997533 224433 65 899999999999999996 79999999997654
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.7e-26 Score=247.87 Aligned_cols=240 Identities=9% Similarity=0.004 Sum_probs=165.4
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE--eecCCCCCCCCEEEEEEec--------CCCEEEEE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT--LLLPDNSFGGRVVRLIYSH--------SGDFLVAL 459 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~--l~~~~~~~~~~v~~l~~sp--------dg~~l~s~ 459 (701)
.|.. +....+++++.++++|+.|++|++||.. .+.+.. ......+|.+.|.+++|+| ||++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~----~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITK----NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEE----TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECC----CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 4555 5566778889999999999999999997 554332 1235678999999999998 89999999
Q ss_pred ECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C-CEEEEEe-CCeEEEEeCCCC
Q 005342 460 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETF 535 (701)
Q Consensus 460 s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~-~~l~s~s-dg~I~iwd~~~~ 535 (701)
+.|++|++||+ .++..... + ..|..+|.+++|+ + .+|++++ ||.|++||++++
T Consensus 163 s~D~tv~~Wd~---------------------~~~~~~~~-~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 163 GDDCTLIIWRL---------------------TDEGPILA-G-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp ETTSEEEEEEE---------------------ETTEEEEE-E-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred ECCCeEEEEEC---------------------CCCceeee-e-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 99999999976 33332221 1 2577899999999 4 4789998 999999999887
Q ss_pred cEEEEe-------------------------cCCCCCeEEEEEc-CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCC
Q 005342 536 QTLATF-------------------------ANPPPIATYFILL-PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 588 (701)
Q Consensus 536 ~~~~~~-------------------------~~~~~~i~~l~~s-pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~ 588 (701)
+..... .+|...+.++.|+ |+| .+++++.|+++++||+.+++....+.+|...
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~ 299 (393)
T 4gq1_A 220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK 299 (393)
T ss_dssp C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence 643322 2566778889887 788 9999999999999999988776666665544
Q ss_pred eEEEE------------------Eec--CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 589 ITCLA------------------YSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 589 V~~v~------------------~sp--dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
+..+. |+| ++.++++|+.||+|++||+.+++... . .. +|. .+|++++||||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~---~~-~~~---~~V~svafspd 370 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--I---PI-QLG---MPIVDFCWHQD 370 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--E---EE-ECS---SCEEEEEECTT
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--E---ec-CCC---CcEEEEEEcCC
Confidence 44433 333 34477889999999999999985332 1 11 333 88999999999
Q ss_pred CCEEEEEecCeEEEEECC
Q 005342 649 QIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 649 g~~l~sg~Dg~I~iwd~~ 666 (701)
|++||++.++.+.+|.+.
T Consensus 371 G~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 371 GSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp SSEEEEEESSEEEEEEEG
T ss_pred CCEEEEEeCCCeEEEEEe
Confidence 999999888888888763
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.7e-27 Score=271.83 Aligned_cols=241 Identities=11% Similarity=0.089 Sum_probs=194.3
Q ss_pred eEEEeecCcceeeeEEEEccC-------CCCCeEEEEeccCCc--cccccccccCCCCCCCCCCcccccCCCCCCCcccc
Q 005342 320 LSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFPTVS--NLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFN 390 (701)
Q Consensus 320 ~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~ 390 (701)
...+.+|.+.|. +++|+|+ +.||+|++||+.++. .... +.
T Consensus 2 ~~~l~gH~~~V~--~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-----------------------------l~ 50 (753)
T 3jro_A 2 VVIANAHNELIH--DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-----------------------------LT 50 (753)
T ss_dssp ------CCCCEE--EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-----------------------------EC
T ss_pred eeecccCcceeE--EEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-----------------------------cc
Confidence 346789999999 9999999 789999999998443 2322 35
Q ss_pred CCCc-eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC--CCEEEEEECCCcE
Q 005342 391 DNNQ-SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATH 465 (701)
Q Consensus 391 ~h~~-V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i 465 (701)
+|.. |++++|+|+ +++|++|+.||.|++||+. .+....+. ...+|...|.+++|+|+ |+.+++|+.||.|
T Consensus 51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~----~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I 125 (753)
T 3jro_A 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----NGRWSQIA-VHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125 (753)
T ss_dssp CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE----TTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC----CCcccccc-cccCCCCCeEEEEECCCCCCCEEEEEeCCCcE
Confidence 7777 999999988 9999999999999999998 55422212 23458899999999999 9999999999999
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-C--------------CEEEEEe-CCeEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G--------------SHLFSAS-GGKISI 529 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~--------------~~l~s~s-dg~I~i 529 (701)
++||+..... ..... + .+|...|.+++|+ . ..+++|+ ||.|++
T Consensus 126 ~vwdl~~~~~------------------~~~~~--~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~i 184 (753)
T 3jro_A 126 SVVEFKENGT------------------TSPII--I-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (753)
T ss_dssp EEEECCSSSC------------------CCCEE--E-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEE
T ss_pred EEEEeecCCC------------------cceeE--e-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEE
Confidence 9998744310 01111 1 3678889999987 2 5788888 999999
Q ss_pred EeCCCC----cEEEEecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCc-----eEEeecCCCCCeEEEEEec
Q 005342 530 FSLETF----QTLATFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 530 wd~~~~----~~~~~~~~~~~~i~~l~~spd---g-~l~~gs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~v~~sp 596 (701)
||++++ .....+.+|...|++++|+|+ + ++++|+.||.|++||+++++ ......+|.+.|++++|+|
T Consensus 185 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred EeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 999876 566778899999999999999 9 99999999999999998864 3344456889999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 005342 597 SLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 597 dg~~l~s~s~D~~I~vwd~~~ 617 (701)
+|+++++|+.||.|++||+..
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 999999999999999999985
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-26 Score=241.78 Aligned_cols=254 Identities=8% Similarity=0.052 Sum_probs=191.1
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~ 420 (701)
+.|++|++||+.+++.+..+ . ...|.++.|+|+ +++|+.|++|++|+
T Consensus 55 ~~Dg~v~iwd~~~~~~~~~~----------~--------------------~~~v~~~~~~~~---~~s~s~D~~i~~w~ 101 (343)
T 3lrv_A 55 CEDGALHFTQLKDSKTITTI----------T--------------------TPNPRTGGEHPA---IISRGPCNRLLLLY 101 (343)
T ss_dssp EETTEEEEEEESSSSCEEEE----------E--------------------EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred CCCCcEEEEECCCCcEEEEE----------e--------------------cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence 56999999999999887763 1 011556678888 99999999999998
Q ss_pred ccccC-----CCCc-eeEeecCCCCCCCCEEEEEEec--CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342 421 LQLIN-----EPSE-CRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (701)
Q Consensus 421 ~~~~~-----~~~~-~~~l~~~~~~~~~~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~ 492 (701)
..... ..++ ...+. ..|...|.+++|+| +++++++++.||.|++||+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~---------------------~ 157 (343)
T 3lrv_A 102 PGNQITILDSKTNKVLREIE---VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY---------------------E 157 (343)
T ss_dssp TTTEEEEEETTTCCEEEEEE---CCCSSCEEEEECCC---CCEEEEEETTCCEEEEES---------------------S
T ss_pred ccCceEEeecCCcceeEEee---cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC---------------------C
Confidence 75210 1222 12211 24668899999999 9999999999999999966 4
Q ss_pred CCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEE-EEecC-CCCCeEEEEEcCCC-eEEEEeCCC
Q 005342 493 SKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFAN-PPPIATYFILLPQD-LFAFGFDDS 566 (701)
Q Consensus 493 ~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~-~~~~~-~~~~i~~l~~spdg-~l~~gs~dg 566 (701)
+++.... ....+...+.+++|+ |.++++|+ ||.|++||+++++.+ ..+.+ |..+|++++|+|+| ++++++. +
T Consensus 158 ~~~~~~~-~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~ 235 (343)
T 3lrv_A 158 DDSQYIV-HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q 235 (343)
T ss_dssp SSCEEEE-ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S
T ss_pred CCcEEEE-EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C
Confidence 4443321 223456679999999 88999998 999999999999887 78887 99999999999999 9999994 5
Q ss_pred cEEEEeCCCCceEEeecC---CCCCeE--EEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 567 SILVHCPCTKKTKAKLKG---HQNRIT--CLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 567 ~I~iwd~~~~~~~~~l~~---h~~~V~--~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
.|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|++..+... .. . .++
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~----~~-~--------~~~ 302 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN----WT-K--------DEE 302 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----EE-E--------EEE
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----eE-e--------cCc
Confidence 999999999877665554 444444 6999999999999998 999999999765321 11 0 346
Q ss_pred EEEEEcC---CCCEEEEE-ecCeEEEEECC
Q 005342 641 NHIQFHP---DQIHLLSI-HEGQIDVYEAP 666 (701)
Q Consensus 641 ~~v~~sp---dg~~l~sg-~Dg~I~iwd~~ 666 (701)
..+.|+| +++.++++ .|+.+.++-..
T Consensus 303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 303 SALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred eeEecCccccccceeEEEecCCceEEEEec
Confidence 7788888 78888875 89988887653
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1e-26 Score=249.62 Aligned_cols=242 Identities=8% Similarity=-0.006 Sum_probs=165.0
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcC--------CCCeEEEEc
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLP--------DADSAVCAK 411 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~sp--------dg~~l~s~s 411 (701)
+.|++|+|||+.++.+.... ....+.+|.+ |++++|+| ||++||+|+
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~------------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQH------------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEE------------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred eCCCcEEEEECCCCccceee------------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 78999999999988765431 1223578999 99999998 899999999
Q ss_pred CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC-EEEEEECCCcEEEEecCCCCccc---cccccce-ee
Q 005342 412 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL---EEENVNM-ES 486 (701)
Q Consensus 412 ~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~---g~~~~~~-~i 486 (701)
.|++|++||+. .+...... ..|...|.+++|+|++. +|++++.||+|++||+.++.... ....... .+
T Consensus 164 ~D~tv~~Wd~~----~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 164 DDCTLIIWRLT----DEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp TTSEEEEEEEE----TTEEEEEE---EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred CCCeEEEEECC----CCceeeee---cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 99999999997 33322211 14778999999999875 79999999999999997765411 0000000 00
Q ss_pred EEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEE------------
Q 005342 487 QLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY------------ 550 (701)
Q Consensus 487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~------------ 550 (701)
..++....... ....+|...+.++.|+ +..+++++ |+.+++||+.+++....+..+...+..
T Consensus 237 ~s~~~~~~~~~--~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 237 LTLNTLPLVNT--CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp EEEESGGGC--------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred Eecccccceee--eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 00011100000 0113688899999987 88999999 999999999887766655544333322
Q ss_pred ------EEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 551 ------FILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 551 ------l~~sp--dg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
..++| ++ ++++|+.||.|++||+.+++....+.+|..+|++++|+|||++||++++|| +.+|.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 23333 33 778899999999999999998888888999999999999999999999776 5666543
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.6e-24 Score=238.01 Aligned_cols=305 Identities=13% Similarity=0.116 Sum_probs=230.3
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEec--cCCccccccccccCCCCCCCCCCccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDF--PTVSNLRYASSILTDKPNQEGRPLDA 377 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (701)
++|.+||..+++++.++..+.. +. +++|+|| +.|++|++||+ .+++++..+
T Consensus 159 ~~V~v~D~~t~~~~~~i~~g~~-~~--~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----------------- 218 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDTGYA-VH--ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------------- 218 (543)
T ss_dssp TEEEEEETTTCCEEEEEECSTT-EE--EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------
T ss_pred CeEEEEECCCceEEEEEecCcc-cc--eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------
Confidence 7899999999999999985444 77 9999999 67799999999 777766652
Q ss_pred ccCCCCCCCccccCCCceEEEEEcC----CCCeEEEEc-CCCcEEEEeccccCCCCceeEeecCCCC--------C-CCC
Q 005342 378 SSGDDSNDSSCFNDNNQSRESTSLP----DADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNS--------F-GGR 443 (701)
Q Consensus 378 s~~D~~~~~~~l~~h~~V~~l~~sp----dg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~~~~~~--------~-~~~ 443 (701)
..+..+..++|+| ||+++++++ .+++|.+||.. ++++.... +..+ | ...
T Consensus 219 ------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~----t~~~~~~i-~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 219 ------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----TLEPKQIV-STRGMTVDTQTYHPEPR 281 (543)
T ss_dssp ------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT----TCCEEEEE-ECCEECSSSCCEESCCC
T ss_pred ------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc----ccccceee-cccCcccCccccccCCc
Confidence 1122278999999 999999988 48999999987 55543311 1110 2 337
Q ss_pred EEEEEEecCCCEEE-EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE
Q 005342 444 VVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 520 (701)
Q Consensus 444 v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~ 520 (701)
+.++.++|++..++ +...++.|.+||..+.. ...+. .+ .+...+.+++|+ |++++
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-------------------~l~~~-~i--~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDID-------------------NLTVT-SI--GAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSS-------------------SCEEE-EE--ECCSSCCCEEECTTSCEEE
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCC-------------------cceeE-Ee--ccCcCccCceECCCCCEEE
Confidence 99999999887655 44558999999763321 00111 12 234567788999 88776
Q ss_pred EEe--CCeEEEEeCCCCcEEEEecC----CCCCeEEEEEcCCC--eEEEEe-CCCcEEEEeCCC-------CceEEeecC
Q 005342 521 SAS--GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD--LFAFGF-DDSSILVHCPCT-------KKTKAKLKG 584 (701)
Q Consensus 521 s~s--dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~spdg--~l~~gs-~dg~I~iwd~~~-------~~~~~~l~~ 584 (701)
+++ +++|.+||..+++++..+.. |......+ ++|++ .++++. .|++|.+||..+ .++++++.+
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 654 79999999999999888874 44333333 57885 667765 689999999998 899999999
Q ss_pred CCCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCeeeeeeeee--e---ccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 585 HQNRITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s-------~D~~I~vwd~~~g~~~~~~~l~--~---~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
|.+.+..++++|+|++|++++ .+++|.|||+.+++... ..+. . +. .+. ..+..+.|+|||+.+
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~-~~~---~~~~~~~~~~~g~~~ 493 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLG-EGA---KRVVQPEYNKRGDEV 493 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCC-SSC---CEEEEEEECSSSSEE
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-EEeechhhcccC-CCC---CceEeccCCCCCCEE
Confidence 988889999999999999887 27799999999986431 2221 0 11 222 789999999999999
Q ss_pred EEE-e-----cCeEEEEECCCCceeeeeee
Q 005342 653 LSI-H-----EGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 653 ~sg-~-----Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+++ . |+.|.|||..|++++++++.
T Consensus 494 ~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 494 WFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 875 2 68999999999999999986
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.6e-24 Score=235.19 Aligned_cols=254 Identities=11% Similarity=0.013 Sum_probs=204.1
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec--CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 394 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL--PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~--~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
.+.+++|+|++.++++++.++.|++||+. +++...... ...+|...|.+++|+|+|+.+++++.|+.|++||+
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~- 198 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDIN----SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL- 198 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETT----TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET-
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECC----CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC-
Confidence 36689999988888999999999999997 555443211 12357889999999999999999999999999965
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE-EEe-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
.+++.... + ..|...+.+++|+ ++.++ +++ |+.|++||+++++.+..+.. ...
T Consensus 199 --------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~ 255 (433)
T 3bws_A 199 --------------------KTLAYKAT-V-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGL 255 (433)
T ss_dssp --------------------TTCCEEEE-E-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSE
T ss_pred --------------------CCceEEEE-E-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCC
Confidence 44444332 2 2577889999999 77664 554 89999999999998888875 456
Q ss_pred eEEEEEcCCC-eEEEEe--------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCC
Q 005342 548 ATYFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVG 617 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~-l~s~s~D~~I~vwd~~~ 617 (701)
+.+++|+|+| .+++++ .||.|++||+.+++.+..+. |...+.+++|+|+++. +++++.|+.|++||+.+
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 8999999999 888877 58899999999998877663 6668999999999975 46778999999999998
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-e---------------cCeEEEEECCCCceeeeeee---ee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQVLL---IS 678 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~---------------Dg~I~iwd~~~g~~~~~l~~---i~ 678 (701)
++... . +. .. ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. +.
T Consensus 335 ~~~~~--~---~~-~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~ 404 (433)
T 3bws_A 335 KKVQK--S---IP-VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT 404 (433)
T ss_dssp TEEEE--E---EE-CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred CcEEE--E---ec-CC----CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence 75432 2 21 22 678999999999988875 3 46999999999999998877 89
Q ss_pred EEEEEeeE
Q 005342 679 HIMFVQIV 686 (701)
Q Consensus 679 ~~~fs~~~ 686 (701)
+++|+|+.
T Consensus 405 ~~~~s~dg 412 (433)
T 3bws_A 405 GLDVSPDN 412 (433)
T ss_dssp EEEECTTS
T ss_pred eEEEcCCC
Confidence 99999874
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=7.8e-24 Score=228.74 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=182.0
Q ss_pred CCeEEEEcCC------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC---cEEEEecCCCC
Q 005342 404 ADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---THKLWKWQSNK 474 (701)
Q Consensus 404 g~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~ 474 (701)
+..++.++.+ +.|++||+. .+....+. .|...+.+++|+|||++|++++.++ .|++||+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~----g~~~~~l~----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~---- 210 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD----GYNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL---- 210 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT----SCSCEEEE----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----
T ss_pred CCEEEEEEecCCCCccceEEEEcCC----CCCCEEEe----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC----
Confidence 5666666554 799999996 44444433 3678999999999999999999875 8888855
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEE-EEe-CC--eEEEEeCCCCcEEEEecCCCCCe
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GG--KISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
.+++... + ..|...+.+++|+ |+.|+ +++ ++ .|++||+.+++. ..+..+...+
T Consensus 211 -----------------~tg~~~~--l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~ 269 (415)
T 2hqs_A 211 -----------------ANGAVRQ--V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNN 269 (415)
T ss_dssp -----------------TTCCEEE--E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCE
T ss_pred -----------------CCCcEEE--e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcc
Confidence 4555432 2 2466789999999 78777 555 54 599999988776 5667788889
Q ss_pred EEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeee
Q 005342 549 TYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKL 621 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~ 621 (701)
.+++|+||| .|++++. ++ .|++||+.+++. ..+..|...+.+++|+|||++|++++.+ ..|++||+.+++.
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~- 347 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV- 347 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-
Confidence 999999999 8888776 44 788889988764 4455677789999999999999988764 5899999999753
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC---eEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPTLNHTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~g~~~~~l~~----i~~~~fs~~~ 686 (701)
..+. .+ ..+.+++|+|||++|+++ .++ .|++||+. ++..+.+.+ |.+++|+|..
T Consensus 348 --~~l~----~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 348 --QVLS----ST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp --EECC----CS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred --EEec----CC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 1222 22 468999999999999884 555 79999986 555666665 9999999864
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.6e-23 Score=226.21 Aligned_cols=266 Identities=12% Similarity=0.048 Sum_probs=201.8
Q ss_pred ccccccc--Ccccee--EEEeecCcceeeeEEEEcc---------------C---------CCC---CeEEEEeccCCcc
Q 005342 308 KLKFPSM--DKSRLL--SLIKQIMDWWVPYCINVMP---------------N---------ANN---ETISLKDFPTVSN 356 (701)
Q Consensus 308 ~i~iwd~--~~~~~~--~~l~~h~~~v~~~~l~fsp---------------d---------s~d---~~i~lWd~~~~~~ 356 (701)
.+++||+ .+++++ ..+.+|...+. .+++++ + ..+ ++|++||+..+.
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~- 170 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLR--YAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN- 170 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHH--HHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHH--HHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-
Confidence 7899999 999988 55888887776 555553 1 123 799999987433
Q ss_pred ccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCC---cEEEEeccccCCCCceeE
Q 005342 357 LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRT 432 (701)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~ 432 (701)
.+. +.+|.. |.+++|+|||+.|++++.++ .|++||+. ++++..
T Consensus 171 ~~~-----------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~----tg~~~~ 217 (415)
T 2hqs_A 171 QFV-----------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQ 217 (415)
T ss_dssp CEE-----------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----TCCEEE
T ss_pred CEE-----------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC----CCcEEE
Confidence 333 235666 99999999999999999875 99999998 666555
Q ss_pred eecCCCCCCCCEEEEEEecCCCEEE-EEECCCc--EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCe
Q 005342 433 LLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 509 (701)
Q Consensus 433 l~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~--i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 509 (701)
+. .+...+.+++|+|||++|+ +++.++. |.+| |..+++... + ..|...+
T Consensus 218 l~----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~---------------------d~~~~~~~~--l-~~~~~~~ 269 (415)
T 2hqs_A 218 VA----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM---------------------DLASGQIRQ--V-TDGRSNN 269 (415)
T ss_dssp EE----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE---------------------ETTTCCEEE--C-CCCSSCE
T ss_pred ee----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEE---------------------ECCCCCEEe--C-cCCCCcc
Confidence 43 2567899999999999888 5555665 6666 555555432 3 3567789
Q ss_pred EEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceE
Q 005342 510 SCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTK 579 (701)
Q Consensus 510 ~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d---g~I~iwd~~~~~~~ 579 (701)
.+++|+ |++|++++ + + .|++||+.+++. ..+..+...+.+++|+|+| +|++++.+ +.|++||+.+++..
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 999999 88888777 3 4 788889988764 4455566788999999999 88777764 58999999988764
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 580 AKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
.+..|. .+.+++|+|||++|++++.|+ .|++||+.++. ... +. +|. +.|.+++|+|.-.
T Consensus 349 -~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~---~~~---l~-~~~---~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 -VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KAR---LP-ATD---GQVKFPAWSPYLH 410 (415)
T ss_dssp -ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEE---CC-CSS---SEEEEEEECCCCC
T ss_pred -EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---EEE---ee-CCC---CCCcCCccccccc
Confidence 455564 899999999999999888877 89999998653 122 32 444 8899999999743
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.9e-23 Score=212.66 Aligned_cols=184 Identities=11% Similarity=0.046 Sum_probs=136.2
Q ss_pred CCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec---CCCEEEEEECCCcEEEEecCCCCcc
Q 005342 402 PDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 402 pdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp---dg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
++|+.+.+++ .|+.|++|++.. .++... ....|...+..++|+| ++..|++++.|++|++||+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~---dG~~~~---s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl------ 210 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAE---DGGGKE---NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL------ 210 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECT---TSCEEE---EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET------
T ss_pred CCCcEEEecccCCCCcEEEEEECC---CCceee---eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC------
Confidence 5666666644 588888998852 344333 1124788889999999 7799999999999999955
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEec--CCEE------------EEEe-CCeEEEEeCCCCcEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR--GSHL------------FSAS-GGKISIFSLETFQTLA 539 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~s--~~~l------------~s~s-dg~I~iwd~~~~~~~~ 539 (701)
.+|+++.. +..+ +...+.+++|+ |.++ ++|+ |++|++||..+++.+.
T Consensus 211 ---------------~TGk~l~t-L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 211 ---------------KTGQLLKK-MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp ---------------TTCCEEEE-EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred ---------------CCCcEEEE-EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 56665443 3222 23366677788 5554 5677 8999999999998877
Q ss_pred Ee-----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeE-EEEEecCCCEEEEEeCCCeEEE
Q 005342 540 TF-----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 540 ~~-----~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~v~~spdg~~l~s~s~D~~I~v 612 (701)
.+ .+|...+.+..+ ++ .+++|+.|++|+|||+.+++.++++.+|...+. +++|||||++|+||+.|++|+|
T Consensus 275 v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred EEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 65 356555444444 47 999999999999999999999999999987655 5899999999999999999999
Q ss_pred EEC
Q 005342 613 WDA 615 (701)
Q Consensus 613 wd~ 615 (701)
||+
T Consensus 353 Wd~ 355 (356)
T 2w18_A 353 YHY 355 (356)
T ss_dssp EEE
T ss_pred ecC
Confidence 996
No 130
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4.5e-22 Score=230.34 Aligned_cols=309 Identities=11% Similarity=0.014 Sum_probs=210.8
Q ss_pred ccccccCcccee-EEEeecC-----------------cceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccC
Q 005342 309 LKFPSMDKSRLL-SLIKQIM-----------------DWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILT 365 (701)
Q Consensus 309 i~iwd~~~~~~~-~~l~~h~-----------------~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~ 365 (701)
| +||..+++.+ ..+..|. ..+. +++|||| +.++++++||+.+++.....
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~--~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~----- 117 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF--RTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF----- 117 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCE--EEEETTTTEEEEEETTEEEEEETTTTEEEEEE-----
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce--eEEECCCCeEEEEECCEEEEEECCCCceEEcc-----
Confidence 7 9999999884 4444443 3477 9999999 67799999999988765541
Q ss_pred CCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-----CceeEeecCCCC
Q 005342 366 DKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-----SECRTLLLPDNS 439 (701)
Q Consensus 366 ~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-----~~~~~l~~~~~~ 439 (701)
.+.. +.+++|||||+.|+++ .|+.|++|++. + ++...+.. .
T Consensus 118 -------------------------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~----~~~~~~g~~~~~~~---~ 164 (706)
T 2z3z_A 118 -------------------------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGG----KLGEGMSRAIAVTI---D 164 (706)
T ss_dssp -------------------------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECB----CTTSCCCCCEESCS---C
T ss_pred -------------------------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecC----cccccCCCcEEecc---C
Confidence 2223 5678999999999995 67999999997 4 54444221 1
Q ss_pred CCC--------------CEEEEEEecCCCEEEEEECC-CcEEEEe---cCCCCc--------cccccccceeeEEeeCCC
Q 005342 440 FGG--------------RVVRLIYSHSGDFLVALTQT-ATHKLWK---WQSNKQ--------SLEEENVNMESQLYQPSS 493 (701)
Q Consensus 440 ~~~--------------~v~~l~~spdg~~l~s~s~d-g~i~vwd---~~~~~~--------~~g~~~~~~~i~~~d~~~ 493 (701)
+.. .+.+++|||||++|++++.| ..+..+. ...... ..|.......+.+||..+
T Consensus 165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~ 244 (706)
T 2z3z_A 165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT 244 (706)
T ss_dssp CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence 222 24789999999999998743 2111111 111100 112222334577888888
Q ss_pred CeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC-----eEEEEeCCCCcEEEEec--CCC---CCeEEEEEcC--CC-
Q 005342 494 KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-----KISIFSLETFQTLATFA--NPP---PIATYFILLP--QD- 557 (701)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-----~I~iwd~~~~~~~~~~~--~~~---~~i~~l~~sp--dg- 557 (701)
++.........|...+.+++|+ |+.|++++ ++ .|++||+.+++....+. .+. ..+.+++|+| ||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence 8755322222466789999999 88888876 64 89999999984333332 122 1246789999 99
Q ss_pred eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEE-EEEecCCCEEEEEeC-CC----eEEEEECCCCeeeeeeeeeecc
Q 005342 558 LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITC-LAYSLSLNVLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~-v~~spdg~~l~s~s~-D~----~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
++++++.|+.+++|++. ++..+..+.+|...+.+ ++|+|+|+.|+.++. ++ .|+.||..+++. .. +.
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~ 398 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT---KD---LT 398 (706)
T ss_dssp EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC---EE---SC
T ss_pred EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc---ee---cc
Confidence 99999999998898876 67777888888878877 799999997765554 44 788888887642 22 21
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEE-ec----CeEEEEECCCCc
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLN 669 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~sg-~D----g~I~iwd~~~g~ 669 (701)
+. ..+.+++|||||++++.+ .+ +.|++||+.+++
T Consensus 399 --~~---~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 399 --PE---SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp --CS---SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred --CC---CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 22 668999999999998874 32 569999998887
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=7e-22 Score=220.35 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=204.7
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~ 420 (701)
+.|++|.+||..+++++..+ .. +|. +..++|+|||++|++++.|+.|.+||
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i----------~~------------------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D 206 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVI----------DT------------------GYA-VHISRMSASGRYLLVIGRDARIDMID 206 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEE----------EC------------------STT-EEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred cCCCeEEEEECCCceEEEEE----------ec------------------Ccc-cceEEECCCCCEEEEECCCCeEEEEE
Confidence 66899999999999888773 21 222 77899999999999999999999999
Q ss_pred c--cccCCCCceeEeecCCCCCCCCEEEEEEec----CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342 421 L--QLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (701)
Q Consensus 421 ~--~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp----dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~ 493 (701)
+ . ++++.. .++ +...+..++|+| ||+++++++. +++|.+||..+
T Consensus 207 ~~~~----t~~~~~-~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--------------------- 257 (543)
T 1nir_A 207 LWAK----EPTKVA-EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--------------------- 257 (543)
T ss_dssp TTSS----SCEEEE-EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---------------------
T ss_pred CcCC----CCcEEE-EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---------------------
Confidence 9 5 444333 121 345689999999 9999999885 89999997633
Q ss_pred CeEEeecccC----------CCCCCeEEEEec--CCE-EEEEe-CCeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC
Q 005342 494 KLVMTNDIAA----------DPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD 557 (701)
Q Consensus 494 ~~~~~~~~~~----------~~~~~v~~l~~s--~~~-l~s~s-dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg 557 (701)
++++.. +.. .+...+.++.++ +.. +++.. ++.|.+||+.+++.+. .+. +...+..++|+|+|
T Consensus 258 ~~~~~~-i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg 335 (543)
T 1nir_A 258 LEPKQI-VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSH 335 (543)
T ss_dssp CCEEEE-EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTS
T ss_pred ccccee-ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCC
Confidence 332221 100 023378889998 454 45555 7999999998765433 444 55667899999999
Q ss_pred -eEE-EEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecC-CCEEEEEe-CCCeEEEEECCCCee--eeeeeee
Q 005342 558 -LFA-FGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVGWKK--LCSKFLH 627 (701)
Q Consensus 558 -~l~-~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spd-g~~l~s~s-~D~~I~vwd~~~g~~--~~~~~l~ 627 (701)
+++ ++..+++|.+||..+++++..+.. |.+....+ ++|+ |.++++++ .|++|.+||+.++.. ...+.++
T Consensus 336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 655 455688999999999999888874 65444443 5787 66777775 689999999988210 0012233
Q ss_pred eccCCCCCCCCCeEEEEEcCCCCEEEEEe--------cCeEEEEECCCCcee-eeee----------e--eeEEEEEeeE
Q 005342 628 SFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQVL----------L--ISHIMFVQIV 686 (701)
Q Consensus 628 ~~~~~~~~~~~~v~~v~~spdg~~l~sg~--------Dg~I~iwd~~~g~~~-~~l~----------~--i~~~~fs~~~ 686 (701)
++. +|. ..+..+.|||||++|+++. +++|.|||+.+++.. ..++ + +.++.|+|+.
T Consensus 415 ~l~-~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 415 ELQ-GQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEE-CSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEE-cCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 233 443 6678899999999999964 789999999999887 5541 1 8899998874
Q ss_pred E
Q 005342 687 V 687 (701)
Q Consensus 687 ~ 687 (701)
.
T Consensus 491 ~ 491 (543)
T 1nir_A 491 D 491 (543)
T ss_dssp S
T ss_pred C
Confidence 3
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=6.9e-22 Score=201.47 Aligned_cols=248 Identities=10% Similarity=-0.027 Sum_probs=185.6
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw 419 (701)
+.|++|++||+.+++.... ..|.. |.+++|+|||++|++++ ++.|.+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~------------------------------~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~ 67 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVV------------------------------WQTPELFEAPNWSPDGKYLLLNS-EGLLYRL 67 (297)
T ss_dssp CCCEEEEEEETTTTEEEEE------------------------------EEESSCCEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CcceeEEEEeCCCCceeee------------------------------ccCCcceEeeEECCCCCEEEEEc-CCeEEEE
Confidence 6789999999988876544 24555 89999999999999987 6899999
Q ss_pred eccccCCC-CceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342 420 KLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV 496 (701)
Q Consensus 420 ~~~~~~~~-~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~ 496 (701)
|+. + ++...+. ...+...+.+++|+|||+++++++. ++...+|.+ +..++..
T Consensus 68 d~~----~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~-------------------~~~~~~~ 122 (297)
T 2ojh_A 68 SLA----GDPSPEKVD--TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL-------------------PSTGGTP 122 (297)
T ss_dssp ESS----SCCSCEECC--CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE-------------------ETTCCCC
T ss_pred eCC----CCCCceEec--cccccccccceEECCCCCEEEEEEeCCCCcceEEEE-------------------ECCCCce
Confidence 997 5 5444422 1123467889999999999999994 467777755 5455443
Q ss_pred EeecccCCCCCCeEEEEec--CCEEE-EEe-CCeEEEEeCCC-CcEEEEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEE
Q 005342 497 MTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGF-DDSSIL 569 (701)
Q Consensus 497 ~~~~~~~~~~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~spdg-~l~~gs-~dg~I~ 569 (701)
.. +. +...+.+++|+ |+.++ ++. ++.+++|++.. +.....+..+...+.+++|+|+| .+++++ .++.+.
T Consensus 123 ~~--~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 198 (297)
T 2ojh_A 123 RL--MT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQ 198 (297)
T ss_dssp EE--CC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EE--ee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCcc
Confidence 32 21 22358889999 77776 565 89889988532 23445666677889999999999 776655 588999
Q ss_pred EEeCC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----------CeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 570 VHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----------AQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 570 iwd~~-~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
+|++. .+..+..+..|...+.+++|+|+|++|++++.+ +.|++||+.+++......+. +|.
T Consensus 199 i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~--- 271 (297)
T 2ojh_A 199 IWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF----GGQ--- 271 (297)
T ss_dssp EEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE----EST---
T ss_pred EEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC----CCC---
Confidence 99876 556667788888889999999999999888765 57999999987643322222 333
Q ss_pred CCeEEEEEcCCCCEEEEE
Q 005342 638 TIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg 655 (701)
..+.+++|+|+|++|+++
T Consensus 272 ~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 272 GTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp TTSCSCCBCTTSSEEEEE
T ss_pred cccccceECCCCCEEEEE
Confidence 678899999999999875
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=5.3e-21 Score=230.88 Aligned_cols=328 Identities=10% Similarity=0.014 Sum_probs=234.2
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------C------CCCeEEEEeccCCccccccccccCCCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------A------NNETISLKDFPTVSNLRYASSILTDKPNQEGR 373 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~ 373 (701)
+.|.+|+..+++. ..+..|...+. +++|||| + .+..|++||+.++.....
T Consensus 33 ~~l~~~~~~gg~~-~~lt~~~~~v~--~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~l-------------- 95 (1045)
T 1k32_A 33 DDLWEHDLKSGST-RKIVSNLGVIN--NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI-------------- 95 (1045)
T ss_dssp TEEEEEETTTCCE-EEEECSSSEEE--EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC--------------
T ss_pred CcEEEEECCCCcE-EEeeeCCCccc--CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEc--------------
Confidence 5688999987764 56778999999 9999999 2 234799999988764332
Q ss_pred CcccccCCCCCCCccccCCCc-e-------EEEEEcCCCCeEEEEcCC------CcEEEEeccccCCCCceeEeec----
Q 005342 374 PLDASSGDDSNDSSCFNDNNQ-S-------RESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLL---- 435 (701)
Q Consensus 374 ~~~~s~~D~~~~~~~l~~h~~-V-------~~l~~spdg~~l~s~s~d------~~v~iw~~~~~~~~~~~~~l~~---- 435 (701)
..|.. + ..++|+|||+.+++++.+ ..+..|++. ++....+..
T Consensus 96 ----------------t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~----~g~~~~l~~~~~~ 155 (1045)
T 1k32_A 96 ----------------TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEND----GINFVPLNLGPAT 155 (1045)
T ss_dssp ----------------CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGG----GTEEEECCSCSCS
T ss_pred ----------------ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECC----CCCeEEecCCCcc
Confidence 23444 5 899999999977777754 357777765 222111100
Q ss_pred ------------------------------------------CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 436 ------------------------------------------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 436 ------------------------------------------~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
...+|...+.++.|+++ ..+++++.|+.+.+|.+...
T Consensus 156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 00245677888899988 55566667899999986532
Q ss_pred --Cc---------------ccccccc---ceeeEEeeCCCCeEEeecccCC----------CCCCeEEEEec---CCEEE
Q 005342 474 --KQ---------------SLEEENV---NMESQLYQPSSKLVMTNDIAAD----------PKDSISCFALR---GSHLF 520 (701)
Q Consensus 474 --~~---------------~~g~~~~---~~~i~~~d~~~~~~~~~~~~~~----------~~~~v~~l~~s---~~~l~ 520 (701)
.. ++|+.++ ...+.+|+...+.+.. +... |...+.+++|+ |+.++
T Consensus 235 g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la 312 (1045)
T 1k32_A 235 GKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA 312 (1045)
T ss_dssp SCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred CCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeee--eccCcccccccccccccccceeeecCCCCCEEE
Confidence 11 1122111 1125666664444331 2110 23368888886 77888
Q ss_pred EEeCCeEEEEeCCCCcEEEEecCCCC-CeEEEEEcCCC-eEEEEeCCCcEE-EEeCCCCceEEeecCCCCCeEEEEEecC
Q 005342 521 SASGGKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGFDDSSIL-VHCPCTKKTKAKLKGHQNRITCLAYSLS 597 (701)
Q Consensus 521 s~sdg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~spdg-~l~~gs~dg~I~-iwd~~~~~~~~~l~~h~~~V~~v~~spd 597 (701)
+++++.|++|+..++... .+..+.. .+..++|+ || .+++++.++.++ +||+.+++... +.+|...+..++|+||
T Consensus 313 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpD 389 (1045)
T 1k32_A 313 FVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRN 389 (1045)
T ss_dssp EEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTT
T ss_pred EEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCC
Confidence 888999999999877654 4566666 88999999 99 888888888999 99998876554 4478889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec----------CeEEEEECC
Q 005342 598 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----------GQIDVYEAP 666 (701)
Q Consensus 598 g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D----------g~I~iwd~~ 666 (701)
|++|++++.++.|++||+.+|+... +..+|. ..+.+++|||||++|+++ .+ +.|++||+.
T Consensus 390 G~~la~~~~~~~v~~~d~~tg~~~~------~~~~~~---~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 390 GKFAVVANDRFEIMTVDLETGKPTV------IERSRE---AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE------EEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCEEEEECCCCeEEEEECCCCceEE------eccCCC---CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999999999999999986322 222444 778999999999999874 44 389999999
Q ss_pred CCceeeeeee----eeEEEEEeeEE
Q 005342 667 TLNHTSQVLL----ISHIMFVQIVV 687 (701)
Q Consensus 667 ~g~~~~~l~~----i~~~~fs~~~~ 687 (701)
+++ +..+.. +.+++|+|+..
T Consensus 461 ~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 461 GRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCc-EEEeeCCCcccCCceEcCCCC
Confidence 887 444443 78889998743
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=9.8e-22 Score=228.75 Aligned_cols=304 Identities=12% Similarity=0.054 Sum_probs=208.4
Q ss_pred CcceeeeEEEEccC-------CC-CC-----eEEEEeccCCccccccccccCCCCCCCCCCcccccC----CCCC--CCc
Q 005342 327 MDWWVPYCINVMPN-------AN-NE-----TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSG----DDSN--DSS 387 (701)
Q Consensus 327 ~~~v~~~~l~fspd-------s~-d~-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----D~~~--~~~ 387 (701)
...+. .++|||| +. |+ +|++||+.+++....+ ..+.....+. +... ...
T Consensus 36 ~~~~~--~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 103 (741)
T 2ecf_A 36 GPTLM--KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV----------DSKVVLPGTETLSDEEKARRERQ 103 (741)
T ss_dssp CCCCE--EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE----------CGGGTC-----------------
T ss_pred CCCCC--CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc----------chhhcccccccccchhhhhhhhh
Confidence 34567 8999999 44 77 9999999999876652 1111000000 0000 000
Q ss_pred cccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCC---ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 388 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 388 ~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~---~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
-+.+...|.+++|||||++|++++. +.|.+||+. ++ ....+ ..+...+.+++|||||++|++++ ++.
T Consensus 104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~----~~~~~~~~~l----~~~~~~~~~~~~SPDG~~la~~~-~~~ 173 (741)
T 2ecf_A 104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLK----QEGKAAVRQL----THGEGFATDAKLSPKGGFVSFIR-GRN 173 (741)
T ss_dssp ---CCEESCCCEECTTSSEEEEEET-TEEEEEESS----SCSTTSCCBC----CCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred hhccccCcceeEECCCCCEEEEEeC-CcEEEEECC----CCCcceEEEc----ccCCcccccccCCCCCCEEEEEe-CCc
Confidence 0111122778999999999999987 999999997 44 33332 23567899999999999998887 468
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCC----------------CeEEEEec--CCEEEEEe-CC
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD----------------SISCFALR--GSHLFSAS-GG 525 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----------------~v~~l~~s--~~~l~s~s-dg 525 (701)
|.+||+ .++.... +...+.. .+.+++|| |++|++++ |+
T Consensus 174 i~~~d~---------------------~~g~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 174 LWVIDL---------------------ASGRQMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp EEEEET---------------------TTTEEEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred EEEEec---------------------CCCCEEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 888866 3333322 1111111 24678999 88888886 54
Q ss_pred ---------------------------------eEEEEeCCC-CcEEEEec--CCCCCeEEEEEcCCC-eEEEEeC----
Q 005342 526 ---------------------------------KISIFSLET-FQTLATFA--NPPPIATYFILLPQD-LFAFGFD---- 564 (701)
Q Consensus 526 ---------------------------------~I~iwd~~~-~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~---- 564 (701)
.|++||+.+ ++...... .+...+..++| ||| .|++++.
T Consensus 231 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~ 309 (741)
T 2ecf_A 231 SPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ 309 (741)
T ss_dssp TTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS
T ss_pred CCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC
Confidence 889999988 77654443 35677899999 999 7776653
Q ss_pred -CCcEEEEeCCCCceEEeecCCCC----CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCC
Q 005342 565 -DSSILVHCPCTKKTKAKLKGHQN----RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 565 -dg~I~iwd~~~~~~~~~l~~h~~----~V~~v~~spdg~~l~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~ 638 (701)
+..|++||+.+++....+..|.. .+.+++|+|||+++++++.|+.++||.+.. +. ...+..+. .
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~------~~~l~~~~----~ 379 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK------AAALTHGN----W 379 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC------EEESCCSS----S
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC------eeeeeecc----e
Confidence 56899999999988777766543 456899999999999999999888887653 22 22233332 6
Q ss_pred CeEEE-EEcCCCCEEEE-E-ecC--eEEEEECCC-Cceeeeeee---eeEEEEEeeE
Q 005342 639 IVNHI-QFHPDQIHLLS-I-HEG--QIDVYEAPT-LNHTSQVLL---ISHIMFVQIV 686 (701)
Q Consensus 639 ~v~~v-~~spdg~~l~s-g-~Dg--~I~iwd~~~-g~~~~~l~~---i~~~~fs~~~ 686 (701)
.+.++ .|+|||+.|+. + .++ .++||++.. |+..+.+.+ +.+++|||+.
T Consensus 380 ~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg 436 (741)
T 2ecf_A 380 SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNA 436 (741)
T ss_dssp CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTS
T ss_pred EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCC
Confidence 78787 59999998875 4 444 899999864 655566654 8889998874
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.1e-20 Score=192.37 Aligned_cols=258 Identities=10% Similarity=0.054 Sum_probs=174.2
Q ss_pred eEEEEEcCCCCeEEEEcCC-CcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d-~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~ 471 (701)
+.+++|+|+|++|++++.+ +.|.+|++... ++....+. ++ ....+.+++|+|+|+++++++. ++.|.+||+.
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCC--CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 7789999999998888876 99999998621 22322222 21 1237889999999998877776 7899999772
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCC-CcEEE----Eec
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLA----TFA 542 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~-~~~~~----~~~ 542 (701)
.+ ..+..... + .....+.+++|+ |+++++++ ++.|++||+.+ ++... .+.
T Consensus 115 ~~------------------~~~~~~~~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 115 DG------------------LPVGVVDV-V--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp TT------------------EEEEEEEE-E--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CC------------------cccccccc-c--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 10 11112211 1 123457888999 77777665 79999999987 65432 222
Q ss_pred C-CCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCC--Cce--EEeec----CC--CCCeEEEEEecCCCEEE-EEeCCC
Q 005342 543 N-PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCT--KKT--KAKLK----GH--QNRITCLAYSLSLNVLV-SSGADA 608 (701)
Q Consensus 543 ~-~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~--~~~--~~~l~----~h--~~~V~~v~~spdg~~l~-s~s~D~ 608 (701)
. ....+..++|+|+| ++++ +..++.|.+||+.. ++. ...+. ++ ...+..++|+|+|++|+ +++.++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 2 34578899999999 6654 45889999999953 432 22222 11 23567899999998776 555799
Q ss_pred eEEEEECC--CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEE--CCCCce--eeeeee---e
Q 005342 609 QLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE--APTLNH--TSQVLL---I 677 (701)
Q Consensus 609 ~I~vwd~~--~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd--~~~g~~--~~~l~~---i 677 (701)
.|++||+. ++.. ..+..+..+ ..+.+++|+|+|++|+++ .++.|.+|+ ..+|+. +..++. .
T Consensus 254 ~i~v~d~~~~~~~~---~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p 325 (343)
T 1ri6_A 254 LITVFSVSEDGSVL---SKEGFQPTE-----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGP 325 (343)
T ss_dssp EEEEEEECTTSCCE---EEEEEEECS-----SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred EEEEEEEcCCCCce---EEeeeecCC-----CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCC
Confidence 99999998 4332 222222222 347899999999988875 579999994 456643 444443 6
Q ss_pred eEEEEEeeE
Q 005342 678 SHIMFVQIV 686 (701)
Q Consensus 678 ~~~~fs~~~ 686 (701)
.+++|.|..
T Consensus 326 ~~i~~~~~~ 334 (343)
T 1ri6_A 326 MWVVVNAHE 334 (343)
T ss_dssp CEEEEEEEC
T ss_pred eeEEEEccc
Confidence 777777653
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.6e-21 Score=223.26 Aligned_cols=291 Identities=11% Similarity=0.076 Sum_probs=200.3
Q ss_pred EEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC-ceEEEEEcCCCCe
Q 005342 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN-QSRESTSLPDADS 406 (701)
Q Consensus 334 ~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~-~V~~l~~spdg~~ 406 (701)
+++|+|| +.|++|++||+.+++.... +.++. .+. .|.+++|||||++
T Consensus 21 ~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~----------~~~~~----------------~~~~~v~~~~~SpDg~~ 74 (723)
T 1xfd_A 21 EAKWISDTEFIYREQKGTVRLWNVETNTSTVL----------IEGKK----------------IESLRAIRYEISPDREY 74 (723)
T ss_dssp CCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEE----------ECTTT----------------TTTTTCSEEEECTTSSE
T ss_pred ccEEcCCCcEEEEeCCCCEEEEECCCCcEEEE----------ecccc----------------ccccccceEEECCCCCE
Confidence 7889998 6789999999999987665 33321 111 2789999999999
Q ss_pred EEEEcCC---------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 407 AVCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 407 l~s~s~d---------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
|++++.+ +.+.+||+. ++++..+. ....+...+..++|||||+.|++++. +.|++||..++
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~----~~~~~~l~-~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g---- 144 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIP----HGDPQSLD-PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK---- 144 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESS----SCCCEECC-CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS----
T ss_pred EEEEecCccceeecceeeEEEEECC----CCceEecc-CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC----
Confidence 9999764 778899998 56554433 12234556889999999999999886 78999976433
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCC------------------CCeEEEEec--CCEEEEEe-CC-----------
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPK------------------DSISCFALR--GSHLFSAS-GG----------- 525 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------~~v~~l~~s--~~~l~s~s-dg----------- 525 (701)
..... . ..+. ..+.+++|| |+.|++++ ++
T Consensus 145 -----------------~~~~~-~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~ 205 (723)
T 1xfd_A 145 -----------------QAIRV-V-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (723)
T ss_dssp -----------------CCEEE-E-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred -----------------ceEEE-e-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence 22110 0 1111 133788888 78888776 42
Q ss_pred -----------------------eEEEEeCCCCcEEEEecCC------CCCeEEEEEcCCC-eEEEEeCC----CcEEEE
Q 005342 526 -----------------------KISIFSLETFQTLATFANP------PPIATYFILLPQD-LFAFGFDD----SSILVH 571 (701)
Q Consensus 526 -----------------------~I~iwd~~~~~~~~~~~~~------~~~i~~l~~spdg-~l~~gs~d----g~I~iw 571 (701)
.|++||+.+++....+..+ ...+.+++|+||| ++++.+.. ..|++|
T Consensus 206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence 7999999988765666644 4568999999999 77666433 579999
Q ss_pred eCCCCceEEeecC-CCCCeE----EEEEecCCCEEEE--EeCCC------eEEEEE-CCCCeeeeeeeeeeccCCCCCCC
Q 005342 572 CPCTKKTKAKLKG-HQNRIT----CLAYSLSLNVLVS--SGADA------QLCVWD-AVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 572 d~~~~~~~~~l~~-h~~~V~----~v~~spdg~~l~s--~s~D~------~I~vwd-~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
|+.+++....+.. +.+.+. .++|+|||+.|+. +..++ .|++|| ..++... ....+..++
T Consensus 286 d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~---- 358 (723)
T 1xfd_A 286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGD---- 358 (723)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSS----
T ss_pred eCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCC----
Confidence 9999987766654 334443 7899999997664 45677 577788 3444200 011133333
Q ss_pred CCeEE-EEEcCCCCEEEE-Ee-c--CeEEEEECCCCc--eeeeee------e-eeEEEEEeeE
Q 005342 638 TIVNH-IQFHPDQIHLLS-IH-E--GQIDVYEAPTLN--HTSQVL------L-ISHIMFVQIV 686 (701)
Q Consensus 638 ~~v~~-v~~spdg~~l~s-g~-D--g~I~iwd~~~g~--~~~~l~------~-i~~~~fs~~~ 686 (701)
..+.. ++|+|||+.|+. +. + +.++||++.... ....+. + +..++|||+.
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 44544 699999999986 43 4 789999986421 233332 2 7889999874
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.1e-19 Score=191.07 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=189.5
Q ss_pred eEEEEEcCCCCeEEEEcC-------CCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcE
Q 005342 395 SRESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATH 465 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~-------d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i 465 (701)
+..++|+|+|+++++++. ++.|.+||.. +++... +.. ...+.+++|+|+|+++++++. ++.|
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~-----~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----TLEVTQAIHN-----DLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----TCCEEEEEEE-----SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----CCeEEEEEec-----CCCcceEEECCCCCEEEEEecCCCEE
Confidence 678999999998888774 5689999997 454333 222 344678999999997666655 7899
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC--------CCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP--------KDSISCFALR--GSHLFSAS---GGKISIFSL 532 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~v~~l~~s--~~~l~s~s---dg~I~iwd~ 532 (701)
.+||. .+++.... +..+. ...+.+++++ |+++++++ ++.|.+||.
T Consensus 114 ~~~d~---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 114 TAIDA---------------------KTGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEEET---------------------TTCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EEEeC---------------------CCCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 99965 44443221 11111 1126789998 77666654 689999999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeC-
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA- 606 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~- 606 (701)
.+++.+..+..+...+.+++|+|+| .+++++.++.|.+||..+++.+..+.. +...+..++|+|+|++++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 9999988887566668899999999 999999999999999999988877764 4556888999999997766554
Q ss_pred CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCceeeeeee---eeEEE
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQVLL---ISHIM 681 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~~~~~l~~---i~~~~ 681 (701)
++.|.+||..+++... .+. .+ . ...++|+|+|+++++ + .++.|.+||..+++.+..++. +.+++
T Consensus 252 ~~~v~~~d~~~~~~~~--~~~---~~-----~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 320 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILA--KVA---AP-----E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA 320 (353)
T ss_dssp SSEEEEEETTTCCEEE--EEE---CS-----S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred CCEEEEEECCCCcEEE--EEE---cC-----C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEE
Confidence 5999999999986432 222 12 2 246999999997766 4 589999999999999888876 88889
Q ss_pred EEeeE
Q 005342 682 FVQIV 686 (701)
Q Consensus 682 fs~~~ 686 (701)
|+|+.
T Consensus 321 ~s~dg 325 (353)
T 3vgz_A 321 LSADG 325 (353)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98764
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2.1e-20 Score=217.61 Aligned_cols=310 Identities=10% Similarity=0.035 Sum_probs=215.5
Q ss_pred cccccccCccceeEEEeecCcc------------------------eeeeEEEEccC------CCCCeEEEEeccCC---
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDW------------------------WVPYCINVMPN------ANNETISLKDFPTV--- 354 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~------------------------v~~~~l~fspd------s~d~~i~lWd~~~~--- 354 (701)
.|.+||+.+++....+..+... +. +++|||| +.+++|++||+.++
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV--DYQWSPDAQRLLFPLGGELYLYDLKQEGKA 142 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESC--CCEECTTSSEEEEEETTEEEEEESSSCSTT
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc--eeEECCCCCEEEEEeCCcEEEEECCCCCcc
Confidence 7889999999988888766433 67 9999999 44599999999887
Q ss_pred ccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe
Q 005342 355 SNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL 433 (701)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l 433 (701)
..... ..|.. +..++|||||++|++++. +.|.+||+. +++...+
T Consensus 143 ~~~~l------------------------------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~----~g~~~~~ 187 (741)
T 2ecf_A 143 AVRQL------------------------------THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLA----SGRQMQL 187 (741)
T ss_dssp SCCBC------------------------------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETT----TTEEEEC
T ss_pred eEEEc------------------------------ccCCcccccccCCCCCCEEEEEeC-CcEEEEecC----CCCEEEe
Confidence 33222 24445 889999999999999885 689999997 5655443
Q ss_pred ecCCCCCCCC----------------EEEEEEecCCCEEEEEECCC-cEEEEecCCC-----------Ccccccccccee
Q 005342 434 LLPDNSFGGR----------------VVRLIYSHSGDFLVALTQTA-THKLWKWQSN-----------KQSLEEENVNME 485 (701)
Q Consensus 434 ~~~~~~~~~~----------------v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~-----------~~~~g~~~~~~~ 485 (701)
.. .+... +.+++|||||++|++++.|+ .+..|+.... -...|.......
T Consensus 188 ~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 188 TA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred cc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 31 12221 47799999999999987754 2222210000 001122223345
Q ss_pred eEEeeCCC-CeEEeecccCCCCCCeEEEEec-CCEEEEEe------CCeEEEEeCCCCcEEEEecCCCC----CeEEEEE
Q 005342 486 SQLYQPSS-KLVMTNDIAADPKDSISCFALR-GSHLFSAS------GGKISIFSLETFQTLATFANPPP----IATYFIL 553 (701)
Q Consensus 486 i~~~d~~~-~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s------dg~I~iwd~~~~~~~~~~~~~~~----~i~~l~~ 553 (701)
+.+||..+ ++.........|...+.+++|. |++|++++ +..|++||+.+++....+..+.. .+..++|
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 66778877 7654321212466778888887 88887654 35799999999987776654432 4568999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCC-CCceEEeecCCCCCeEEE-EEecCCCEEEE-EeCCC--eEEEEECCC-Ceeeeeeee
Q 005342 554 LPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCL-AYSLSLNVLVS-SGADA--QLCVWDAVG-WKKLCSKFL 626 (701)
Q Consensus 554 spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~v-~~spdg~~l~s-~s~D~--~I~vwd~~~-g~~~~~~~l 626 (701)
+||| ++++++.||.++||.+. ++. ...+..|...|..+ .|+|||+.|+. ++.++ .+++|++.. +.. ...
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~--~~~- 420 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ--PQR- 420 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC--CEE-
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC--eee-
Confidence 9999 99999999977777654 344 77788888888887 59999997754 55555 899999864 321 122
Q ss_pred eeccCCCCCCCCCeEEEEEcCCCCEEEEE--ec---CeEEEEECCCC
Q 005342 627 HSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE---GQIDVYEAPTL 668 (701)
Q Consensus 627 ~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~D---g~I~iwd~~~g 668 (701)
+. + . ..+.+++|||||++++.. .. ..+.+|+..++
T Consensus 421 --l~-~-~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 --LS-K-A---PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp --CC-C-S---CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred --cc-c-C---CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 22 2 2 668899999999998873 22 46899987543
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=6.9e-20 Score=221.17 Aligned_cols=337 Identities=11% Similarity=-0.022 Sum_probs=242.3
Q ss_pred cccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCcccccC
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASSG 380 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 380 (701)
..++|....+.....+.+|...+. ++.|+|+ +.|+++.||.+.. +..... +
T Consensus 184 ~~~lw~~~~~~~~~~l~~~~~~v~--~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~----------l---------- 241 (1045)
T 1k32_A 184 RGKIWIEVNSGAFKKIVDMSTHVS--SPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK----------H---------- 241 (1045)
T ss_dssp CCEEEEEEETTEEEEEECCSSCCE--EEEEETTEEEEEECTTSSCEEEEEETTSCSCEE----------C----------
T ss_pred cCCEEEECCCCCeEECcCCCCccc--ceEEeCCEEEEEEeccCceEEEEEeCCCCcceE----------e----------
Confidence 455665444455566689999999 9999998 6778999998764 322222 1
Q ss_pred CCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-------CCCCCCEEEEEEe-cC
Q 005342 381 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-------NSFGGRVVRLIYS-HS 452 (701)
Q Consensus 381 D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-------~~~~~~v~~l~~s-pd 452 (701)
..|..+...+|+|||+.++++. ++.|.+|++. ......+.... ..|...+.+++|| ||
T Consensus 242 ---------~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 242 ---------TSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ---------CCCCSSCEEEEEESSSCEEEEE-TTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG
T ss_pred ---------cCCCCcceeeEcCCCCEEEEEe-CCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCC
Confidence 2333355679999999999984 7999999984 34333211100 0023468899999 99
Q ss_pred CCEEEEEECCCcEEEEecCCCCc--c---cc-----------cccc----ceeeE-EeeCCCCeEEeecccCCCCCCeEE
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQ--S---LE-----------EENV----NMESQ-LYQPSSKLVMTNDIAADPKDSISC 511 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~--~---~g-----------~~~~----~~~i~-~~d~~~~~~~~~~~~~~~~~~v~~ 511 (701)
|+++++++ ++.+.+|+...+.. . .+ +.+. ...+. +|+..++.... +. +|...+.+
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~--l~-~~~~~~~~ 383 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--FE-ENLGNVFA 383 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--CC-CCCCSEEE
T ss_pred CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE--ec-CCccceee
Confidence 99998887 78999999876543 0 11 1111 11355 67887776553 33 67788999
Q ss_pred EEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC----------cEEEEeCCCCc
Q 005342 512 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS----------SILVHCPCTKK 577 (701)
Q Consensus 512 l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg----------~I~iwd~~~~~ 577 (701)
++|+ |++|++++ ++.|++||+.+++......+|...+.+++|+||| ++++++.++ .|++||+.+++
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999 88999988 8999999999998888877888889999999999 888777644 89999999887
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee-----e----------------------------
Q 005342 578 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-----K---------------------------- 624 (701)
Q Consensus 578 ~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~-----~---------------------------- 624 (701)
+..+.+|...+..++|+|||++|++++.++...+|+......... .
T Consensus 464 -~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 542 (1045)
T 1k32_A 464 -IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 542 (1045)
T ss_dssp -EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred -EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccc
Confidence 667778888899999999999999999988888887654321000 0
Q ss_pred -----eeeeccCCCCCCCCCeEEEEEcCCCCEEEE------------E--ecCeEEEEECCCCceeeeeeeeeEEEEEee
Q 005342 625 -----FLHSFQTGLVPETTIVNHIQFHPDQIHLLS------------I--HEGQIDVYEAPTLNHTSQVLLISHIMFVQI 685 (701)
Q Consensus 625 -----~l~~~~~~~~~~~~~v~~v~~spdg~~l~s------------g--~Dg~I~iwd~~~g~~~~~l~~i~~~~fs~~ 685 (701)
.+..+. .+ .+.+..++++|||+++++ + .+..|.+||+.+++.......+.+++|||+
T Consensus 543 ~g~~~~~~~l~-~~---~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~D 618 (1045)
T 1k32_A 543 NDMYKRSSPIN-VD---PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSAD 618 (1045)
T ss_dssp TTGGGGCEECS-CC---CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTT
T ss_pred cCHhHceEEcC-CC---CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCC
Confidence 000011 12 267899999999987774 1 245789999998886444433889999988
Q ss_pred EEee
Q 005342 686 VVKF 689 (701)
Q Consensus 686 ~~~f 689 (701)
...+
T Consensus 619 G~~l 622 (1045)
T 1k32_A 619 RKTV 622 (1045)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 5443
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=5e-20 Score=192.03 Aligned_cols=266 Identities=10% Similarity=0.047 Sum_probs=182.5
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC-CCcEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS-LEKSVN 418 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~-d~~v~i 418 (701)
+.+++|.+||..+++....+ . .+.. + .++|+|+|+++++++. ++.|.+
T Consensus 17 ~~~~~v~~~d~~~~~~~~~~----------~-------------------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEILNQI----------T-------------------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQ 66 (331)
T ss_dssp GGGTEEEEEETTTCCEEEEE----------E-------------------CCCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred cCCCeEEEEeCcccceeeeE----------E-------------------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence 55889999999999876662 1 1223 6 8999999997666554 899999
Q ss_pred EeccccCCCCce--eEeecCCCCCCCCEEEEEEecCCCEEEEEECCC---cEEEEecCCCCccccccccceeeEEeeCCC
Q 005342 419 LKLQLINEPSEC--RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---THKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (701)
Q Consensus 419 w~~~~~~~~~~~--~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~ 493 (701)
||.. +++. ..+. .+.....+++|+|||++++++..++ .|.+||+ .+
T Consensus 67 ~d~~----~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~---------------------~~ 117 (331)
T 3u4y_A 67 IETQ----LEPPKVVAIQ----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF---------------------LK 117 (331)
T ss_dssp EECS----SSSCEEEEEE----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET---------------------TT
T ss_pred EECC----CCceeEEecc----cCCCCccceEECCCCCEEEEecCCCCcccEEEEEC---------------------CC
Confidence 9997 4443 2222 1334444499999999988544442 8999955 55
Q ss_pred CeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCe-EEEEeCCCCcEE----EEecCCCCCeEEEEEcCCC-eEE-EE
Q 005342 494 KLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGK-ISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFA-FG 562 (701)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~-I~iwd~~~~~~~----~~~~~~~~~i~~l~~spdg-~l~-~g 562 (701)
++.+.. +. ....+.+++|+ |+++++++ ++. |.+|++.....+ ............++|+|+| +++ ++
T Consensus 118 ~~~~~~-~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 118 NKFIST-IP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp TEEEEE-EE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCeEEE-EE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 554432 21 23456899999 76666554 577 999998754322 1222345567999999999 554 45
Q ss_pred eCCCcEEEEeCCCCce---EEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 563 FDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 563 s~dg~I~iwd~~~~~~---~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
..++.|++||+.+++. +..+..+ ..+..++|+|||++++.++ .++.|.+||+.+++......+..-...+.....
T Consensus 195 ~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 195 LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred CCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 5688999999999988 7777744 5678999999999776554 578999999999875332222200000010012
Q ss_pred CeEEEEEcCCCCEEEE-E-ecCeEEEEECCCCc
Q 005342 639 IVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN 669 (701)
Q Consensus 639 ~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g~ 669 (701)
....++|+|||++|++ + .++.|.+||+.+..
T Consensus 274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 274 GANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 3366899999998876 4 57799999997654
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=7.7e-20 Score=212.07 Aligned_cols=324 Identities=9% Similarity=0.016 Sum_probs=218.5
Q ss_pred CcccccccCccceeEEEeecCc---ceeeeEEEEccC-------CC---------CCeEEEEeccCCccccccccccCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMD---WWVPYCINVMPN-------AN---------NETISLKDFPTVSNLRYASSILTDK 367 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~---~v~~~~l~fspd-------s~---------d~~i~lWd~~~~~~~~~~~~~~~~~ 367 (701)
+.|++||..+++....+..|.. .+. +++|||| +. ++.+.+||+.+++....
T Consensus 37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~--~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-------- 106 (723)
T 1xfd_A 37 GTVRLWNVETNTSTVLIEGKKIESLRAI--RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-------- 106 (723)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCS--EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--------
T ss_pred CCEEEEECCCCcEEEEeccccccccccc--eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec--------
Confidence 7899999999999988887765 378 9999999 22 48899999999876322
Q ss_pred CCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCC----
Q 005342 368 PNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---- 442 (701)
Q Consensus 368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~---- 442 (701)
.. ..+|.. +..++|||||+.||+++. +.|++|++. +++...+.. .+..
T Consensus 107 ---~~----------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~----~g~~~~~~~---~~~~~~~~ 159 (723)
T 1xfd_A 107 ---DP----------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV----GKQAIRVVS---TGKEGVIY 159 (723)
T ss_dssp ---CC----------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS----SSCCEEEEC---CCBTTTEE
T ss_pred ---cC----------------CccccccccccEECCCCCEEEEEEC-CeEEEEECC----CCceEEEec---CCCCCceE
Confidence 11 124555 778999999999999987 799999997 555555432 1122
Q ss_pred --------------CEEEEEEecCCCEEEEEECC-CcEEEEecCCCCc------------cccccccceeeEEeeCCCCe
Q 005342 443 --------------RVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ------------SLEEENVNMESQLYQPSSKL 495 (701)
Q Consensus 443 --------------~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~------------~~g~~~~~~~i~~~d~~~~~ 495 (701)
.+.+++|||||++|++++.| +.+.+|++..... ..|.......+.+||..++.
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 33789999999999998864 5677777632211 12333334568899998887
Q ss_pred EEeecccCC-----CCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEecC-CCCCe----EEEEEcCCC-
Q 005342 496 VMTNDIAAD-----PKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFAN-PPPIA----TYFILLPQD- 557 (701)
Q Consensus 496 ~~~~~~~~~-----~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~~-~~~~i----~~l~~spdg- 557 (701)
.... +... +...+.+++|+ |+++++.. . ..|++||+.+++....+.. +...+ ..++|+|||
T Consensus 240 ~~~~-l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 240 HDLE-MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp CCEE-CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred eeEE-eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence 4222 2211 25678899999 77776654 2 5799999999887665543 22333 378999999
Q ss_pred eEEE--EeCCC------cEEEEe-CCCCc--eEEeecCCCCCeEE-EEEecCCCEEEEEeCC---CeEEEEECCCCeeee
Q 005342 558 LFAF--GFDDS------SILVHC-PCTKK--TKAKLKGHQNRITC-LAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLC 622 (701)
Q Consensus 558 ~l~~--gs~dg------~I~iwd-~~~~~--~~~~l~~h~~~V~~-v~~spdg~~l~s~s~D---~~I~vwd~~~g~~~~ 622 (701)
.|+. +..++ .|++|| ..++. ....+..+...+.. ++|+|||+.|+..+.+ +.+++|++..+....
T Consensus 319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 5553 55677 577888 44444 14555544444554 6999999999866655 789999987532101
Q ss_pred eeeeeeccCC--CCCCCCCeEEEEEcCCCCEEEEE--ecC--eEEEEECCCCceeeee
Q 005342 623 SKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQV 674 (701)
Q Consensus 623 ~~~l~~~~~~--~~~~~~~v~~v~~spdg~~l~sg--~Dg--~I~iwd~~~g~~~~~l 674 (701)
... +... +. ..+..++|+|||++++.. ..+ ...+++..+++.+..+
T Consensus 399 ~~~---l~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 399 RQC---LSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CBC---SSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred cce---ecccccCC---CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 111 2211 32 668899999999998874 222 3445566566544433
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=6.1e-19 Score=185.22 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=187.2
Q ss_pred CcceeeeEEEEccC--------CC------CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCC
Q 005342 327 MDWWVPYCINVMPN--------AN------NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN 392 (701)
Q Consensus 327 ~~~v~~~~l~fspd--------s~------d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h 392 (701)
...+. .++|+|+ .. ++.|.+||..+++....+ .. .
T Consensus 40 ~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------~~-------------------~ 88 (353)
T 3vgz_A 40 GKGAY--EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------HN-------------------D 88 (353)
T ss_dssp ESSEE--EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------EE-------------------S
T ss_pred ccCcc--ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------ec-------------------C
Confidence 34466 8889998 22 789999999998877662 11 1
Q ss_pred CceEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCcee-EeecCCCC-----CCCCEEEEEEecCCCEEEEEE--CCC
Q 005342 393 NQSRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS-----FGGRVVRLIYSHSGDFLVALT--QTA 463 (701)
Q Consensus 393 ~~V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~-----~~~~v~~l~~spdg~~l~s~s--~dg 463 (701)
..+..++|+|+|+++ +++..++.|.+||.. +++.. .+...... ....+.+++|+|+|+++++++ .++
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAK----TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCC----CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 114568999999955 455667999999997 55443 22221110 011378999999999888776 378
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT 540 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~ 540 (701)
.|.+||. .+++.... + ..+...+.+++++ |+++++++ ++.|.+||..+++....
T Consensus 165 ~i~~~d~---------------------~~~~~~~~-~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 165 VIWVVDG---------------------GNIKLKTA-I-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR 221 (353)
T ss_dssp EEEEEET---------------------TTTEEEEE-E-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred eEEEEcC---------------------CCCceEEE-e-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence 8988854 55554432 2 2234457788898 88888888 89999999999998877
Q ss_pred ecC----CCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEE
Q 005342 541 FAN----PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVW 613 (701)
Q Consensus 541 ~~~----~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vw 613 (701)
+.. +...+..++|+|+| .+++++ .++.|++||..+++.+..+..+. ...++|+|+|++++.+ ..++.|.+|
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence 764 45567889999999 665555 45899999999999888777543 2579999999965544 479999999
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
|..+++.... +. .+ ..+.+++|+|||++++++
T Consensus 300 d~~~~~~~~~--~~---~~-----~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 300 DAKSYKVVKT--FD---TP-----THPNSLALSADGKTLYVS 331 (353)
T ss_dssp ETTTTEEEEE--EE---CC-----SEEEEEEECTTSCEEEEE
T ss_pred ECCCCeEEEE--Ee---cC-----CCCCeEEEcCCCCEEEEE
Confidence 9999864332 22 12 567999999999987764
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.2e-19 Score=188.98 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=188.6
Q ss_pred CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC--ceEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN--QSRESTSLPDADSA-VCAKSLEKSVN 418 (701)
Q Consensus 342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~--~V~~l~~spdg~~l-~s~s~d~~v~i 418 (701)
.+++|.+||+.+++.+..+ .. ++. .+..++|+|+|+.+ ++++.++.|.+
T Consensus 9 ~~~~v~~~d~~~~~~~~~~----------~~------------------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVI----------TI------------------ADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp TTTEEEEEETTTTEEEEEE----------EC------------------TTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEE----------Ec------------------CCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence 4889999999998877652 11 111 14568999999865 56667889999
Q ss_pred EeccccCCCCceeE-eecCCC-CCCCCEEEEEEecCCCEEEEEE------------CCCcEEEEecCCCCccccccccce
Q 005342 419 LKLQLINEPSECRT-LLLPDN-SFGGRVVRLIYSHSGDFLVALT------------QTATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 419 w~~~~~~~~~~~~~-l~~~~~-~~~~~v~~l~~spdg~~l~s~s------------~dg~i~vwd~~~~~~~~g~~~~~~ 484 (701)
||+. +++... +..... .+...+.+++|+|||+++++++ .++.|.+||.
T Consensus 61 ~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~-------------- 122 (337)
T 1pby_B 61 IDLV----TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA-------------- 122 (337)
T ss_dssp EETT----TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET--------------
T ss_pred EECC----CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEEC--------------
Confidence 9997 444332 222110 0112567899999999988886 5688888855
Q ss_pred eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEE
Q 005342 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 561 (701)
Q Consensus 485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~ 561 (701)
.+++.... +. ....+.+++|+ |++++++ ++.|++||+.+++....+..+.. ...+.|+|+| .++.
T Consensus 123 -------~~~~~~~~-~~--~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 123 -------ETLSRRKA-FE--APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp -------TTTEEEEE-EE--CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred -------CCCcEEEE-Ee--CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 45554322 21 23456788898 7777777 78899999999988877764431 1133789998 5544
Q ss_pred EeCC-C-----------------------cEEEEeCCCCceE-EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 562 GFDD-S-----------------------SILVHCPCTKKTK-AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 562 gs~d-g-----------------------~I~iwd~~~~~~~-~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
++.+ + .|.+||+.+++.. ..+..+...+.+++|+|||++++++ ++.|++||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 4332 2 4689999998764 2234466678899999999999888 7899999999
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+++... . +..+ ..+.+++|+|||++++++ .++.|.+||+.+++.+..++.
T Consensus 269 ~~~~~~--~---~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 269 KNASIK--R---VPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTEEEE--E---EECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCcCcc--e---ecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 976432 2 2222 456899999999988886 789999999999999888765
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=4.2e-20 Score=188.20 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=181.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------CCCCeEEEEeccC-CccccccccccCCCCCCCCCCccccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------ANNETISLKDFPT-VSNLRYASSILTDKPNQEGRPLDASS 379 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s~d~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (701)
+.|.+||..+++.. .+..|...+. +++|+|+ +.++.|.+||+.+ ++.... ..++
T Consensus 22 ~~i~~~d~~~~~~~-~~~~~~~~v~--~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~----------~~~~------ 82 (297)
T 2ojh_A 22 SSIEIFNIRTRKMR-VVWQTPELFE--APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKV----------DTGF------ 82 (297)
T ss_dssp EEEEEEETTTTEEE-EEEEESSCCE--EEEECTTSSEEEEEETTEEEEEESSSCCSCEEC----------CCTT------
T ss_pred eeEEEEeCCCCcee-eeccCCcceE--eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEe----------cccc------
Confidence 67899999998876 4556888899 9999999 5688999999998 766544 1111
Q ss_pred CCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE
Q 005342 380 GDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 456 (701)
Q Consensus 380 ~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l 456 (701)
+.. |.+++|+|||++|++++ .++...+|.+... .+....+. +...+.+++|+|||+++
T Consensus 83 ------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~-----~~~~~~~~~~spdg~~l 143 (297)
T 2ojh_A 83 ------------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST--GGTPRLMT-----KNLPSYWHGWSPDGKSF 143 (297)
T ss_dssp ------------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT--CCCCEECC-----SSSSEEEEEECTTSSEE
T ss_pred ------------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECC--CCceEEee-----cCCCccceEECCCCCEE
Confidence 123 77899999999999998 4456666665411 33333322 23358999999999988
Q ss_pred E-EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEe
Q 005342 457 V-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFS 531 (701)
Q Consensus 457 ~-s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd 531 (701)
+ +++.++.+.+|++ +..++.... + ..+...+.+++|+ |+.+++++ ++.+++|+
T Consensus 144 ~~~~~~~~~~~l~~~-------------------~~~~~~~~~--~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSM-------------------DIDSGVETR--L-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp EEEEEETTEEEEEEE-------------------ETTTCCEEE--C-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEEECCCCceEEEEE-------------------ECCCCcceE--c-ccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 7 6777999999976 555555432 2 3566789999999 77776554 78888888
Q ss_pred CC-CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC-----------CcEEEEeCCCCce--EEeecCCCCCeEEEEEec
Q 005342 532 LE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----------SSILVHCPCTKKT--KAKLKGHQNRITCLAYSL 596 (701)
Q Consensus 532 ~~-~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d-----------g~I~iwd~~~~~~--~~~l~~h~~~V~~v~~sp 596 (701)
+. .+.....+..+...+.+++|+|+| +|++++.+ +.|++||+.+++. +..+.+|...+.+++|+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 202 VRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp EETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred ECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence 75 455667777777889999999999 88777765 5699999998865 344457888999999999
Q ss_pred CCCEEEEEeCCC
Q 005342 597 SLNVLVSSGADA 608 (701)
Q Consensus 597 dg~~l~s~s~D~ 608 (701)
+|++|++++.|.
T Consensus 282 dg~~l~~~~~~~ 293 (297)
T 2ojh_A 282 DGDEFAYVRYFP 293 (297)
T ss_dssp TSSEEEEEEECC
T ss_pred CCCEEEEEEecc
Confidence 999998877653
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.2e-19 Score=205.05 Aligned_cols=243 Identities=12% Similarity=0.017 Sum_probs=176.6
Q ss_pred eEEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---CCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~ 470 (701)
|++++|+|||+.||+++. ||+++||++. ++....+.. .+...+.+++|||| +.+++++. +....+|.+
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt~---~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLNR---EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECCS---SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEc----CCCcEeeec---ccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 899999999999999887 9999999986 666655332 23357999999999 66666664 456677755
Q ss_pred CCCCccccccccceeeEEeeC--CCCeEEeecccCCCCCCeEEEEecCC--EEEEEeCCeEEEEeCCCCcEEEEecCCCC
Q 005342 471 QSNKQSLEEENVNMESQLYQP--SSKLVMTNDIAADPKDSISCFALRGS--HLFSASGGKISIFSLETFQTLATFANPPP 546 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~l~~s~~--~l~s~sdg~I~iwd~~~~~~~~~~~~~~~ 546 (701)
+. ..+.. . +...+...+.+++++|+ .+++++++.+.+||+.+++.......+.
T Consensus 96 -------------------~~~~~g~~~-~--l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 96 -------------------NTSRPGEEQ-R--LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG- 152 (582)
T ss_dssp -------------------ETTSTTCCE-E--CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred -------------------eccCCCccc-c--ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence 33 22222 1 21122222333333343 3444445556699998887655544322
Q ss_pred CeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCe
Q 005342 547 IATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWK 619 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~ 619 (701)
.+++||||| ++++++.+ +.|++||+.+++.. .+.+|.+.+..++|||||++|++++.++ .|++||+.+++
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 789999999 98887777 78999999888765 6778888899999999999999888898 99999999975
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEE--------EcCCCCEEEEE-ecCeEEEEECCCCceeeeeee-eeEEEEE
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL-ISHIMFV 683 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~--------~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~-i~~~~fs 683 (701)
.. .+. ++. ..+..++ |+|||.+++++ .|+++++|++ |+......+ +.+++||
T Consensus 230 ~~---~~~----~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s 291 (582)
T 3o4h_A 230 VE---DLE----LPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW 291 (582)
T ss_dssp EE---ECC----CSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE
T ss_pred EE---Ecc----CCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec
Confidence 32 222 333 4555566 99999777775 8999999999 877765555 8888887
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=9.9e-19 Score=182.58 Aligned_cols=253 Identities=12% Similarity=0.118 Sum_probs=173.8
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-CcEEEEecCCCCccccccccce
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~~~g~~~~~~ 484 (701)
.+++++.|+.|.+|++.. .+....+.. ..+...+.+++|+|+|+++++++.+ +.+.+|++
T Consensus 7 l~~~~~~~~~v~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~-------------- 67 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH---EGALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI-------------- 67 (343)
T ss_dssp EEEEEGGGTEEEEEEECT---TSCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE--------------
T ss_pred EEEeCCCCCeEEEEEECC---CCcEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe--------------
Confidence 445558899999999963 232222221 1245678899999999999998886 99999987
Q ss_pred eeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC---CCCcEEEEecCCCCCeEEEEEcCC
Q 005342 485 ESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL---ETFQTLATFANPPPIATYFILLPQ 556 (701)
Q Consensus 485 ~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~---~~~~~~~~~~~~~~~i~~l~~spd 556 (701)
++.++.... ..+. .+ ..+.+++|+ |+++++++ ++.|.+||+ .+++....+.. ...+.+++|+|+
T Consensus 68 -----~~~~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d 139 (343)
T 1ri6_A 68 -----APDDGALTFAAESA-LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPD 139 (343)
T ss_dssp -----CTTTCCEEEEEEEE-CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTT
T ss_pred -----cCCCCceeeccccc-cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCC
Confidence 333443211 1121 22 377899999 77776665 789999999 44445555553 345889999999
Q ss_pred C-eEEEEe-CCCcEEEEeCCC-CceEE----eecC-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEECC--CCeeeeeee
Q 005342 557 D-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAV--GWKKLCSKF 625 (701)
Q Consensus 557 g-~l~~gs-~dg~I~iwd~~~-~~~~~----~l~~-h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~--~g~~~~~~~ 625 (701)
| .+++++ .++.|++||+.+ ++... .+.. ....+..++|+|+|++++++ ..++.|++||+. +++......
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 9 777776 899999999987 65432 2232 33478899999999977555 488999999995 454332333
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECC--CC--ceeeeeee---eeEEEEEeeE
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TL--NHTSQVLL---ISHIMFVQIV 686 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~--~g--~~~~~l~~---i~~~~fs~~~ 686 (701)
+..+..++. ....+..++|+|+|+++++ + .++.|.+||+. ++ +.+..++. +.+++|+|+.
T Consensus 220 ~~~~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 288 (343)
T 1ri6_A 220 LDMMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG 288 (343)
T ss_dssp EECSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred ccccCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC
Confidence 332333321 1146778999999998886 4 68999999998 33 44545543 7788888763
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.8e-18 Score=181.71 Aligned_cols=247 Identities=10% Similarity=0.040 Sum_probs=164.6
Q ss_pred eEEEEEcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~ 470 (701)
+..++|+|||+ |++++. ++.|.+|++. .+....+.. ...+...+..++|+|||+++++++ .++.+.+|++
T Consensus 42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~----~g~~~~~~~-~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQID----GQTAHKLNT-VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CCCEEECTTCE-EEEEEEETTEEEEEEEEEE----TTEEEEEEE-EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceEEEccCCe-EEEEEecCCCceEEEEEec----CCcEEEeee-eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 66799999999 555443 6899999996 554333221 112456788999999999999888 5799999987
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeeccc-------CCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCC-CCcEE-
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-------ADPKDSISCFALR--GSHLFSAS-GGKISIFSLE-TFQTL- 538 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~-~~~~~- 538 (701)
..... ...+..... ......+.+++|+ |+.+++.. ++.|++||+. +++..
T Consensus 116 ~~~g~------------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~ 177 (347)
T 3hfq_A 116 AADGA------------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE 177 (347)
T ss_dssp CTTSC------------------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE
T ss_pred CCCCC------------------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE
Confidence 32100 001100000 0123458889999 77444444 7899999998 55432
Q ss_pred -EEecC-CCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCC--Cce--EEeecCCC------CCeEEEEEecCCCEE-EE
Q 005342 539 -ATFAN-PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCT--KKT--KAKLKGHQ------NRITCLAYSLSLNVL-VS 603 (701)
Q Consensus 539 -~~~~~-~~~~i~~l~~spdg-~l~~-gs~dg~I~iwd~~~--~~~--~~~l~~h~------~~V~~v~~spdg~~l-~s 603 (701)
..+.. ....+..++|+||| ++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|||++| ++
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 22222 23467889999999 5555 56788999999874 443 23333222 348889999999977 56
Q ss_pred EeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE--ECCCCceee
Q 005342 604 SGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY--EAPTLNHTS 672 (701)
Q Consensus 604 ~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw--d~~~g~~~~ 672 (701)
+..++.|.+|++.. |.. ..+..+.. +. ..+..++|+|||++|+++ .++.|.+| |..+|+...
T Consensus 258 ~~~~~~v~v~~~~~~g~~---~~~~~~~~-~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHL---TLIQQIST-EG---DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EETTTEEEEEEECGGGCE---EEEEEEEC-SS---SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred eCCCCEEEEEEECCCCcE---EEeEEEec-CC---CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 66799999999973 322 22322322 21 557899999999998885 46899999 556777654
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.7e-17 Score=175.33 Aligned_cols=267 Identities=10% Similarity=0.049 Sum_probs=172.1
Q ss_pred eEEEEEcCCCCeEEEEcCC----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd 469 (701)
+..++|+|||++|++++.+ +.+.+|++... ++....+.. ...+......+++ +|+++++++. ++.+.+|+
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~--~g~~~~~~~-~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE--KGTLHLLNT-QKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT--TTEEEEEEE-EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC--CCcEEEeeE-eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 5679999999999998875 79999998621 244333321 1113456677777 8888888774 78999998
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCc-------E-
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQ-------T- 537 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~-------~- 537 (701)
+..... . ............+.. ....+...+.+++|+ |+++++++ ++.|++|++.... .
T Consensus 127 ~~~~g~----~-~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 127 IGQDGA----L-LPASDVIEFKGSGPD----KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp BCTTSC----B-CSCSEEEECCCCCSC----TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred eCCCCc----C-cccceeEEccCCCCC----ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 854211 0 000000000000000 001223456889999 77676665 6899999886433 1
Q ss_pred -----EEEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCce--EEee---cCCCCCeEEEEEecCCCEEEEEe
Q 005342 538 -----LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT--KAKL---KGHQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 538 -----~~~~~~~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~--~~~l---~~h~~~V~~v~~spdg~~l~s~s 605 (701)
.............++|+||| ++++++ .++.|.+||+.+++. +..+ ..+...+..++|+|||++|++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 11122345567899999999 776666 689999999987754 2323 22344578999999999886665
Q ss_pred C--CCeEEEEECC--CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEE--ECCCCceeeeeee-
Q 005342 606 A--DAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVY--EAPTLNHTSQVLL- 676 (701)
Q Consensus 606 ~--D~~I~vwd~~--~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iw--d~~~g~~~~~l~~- 676 (701)
. ++.|.+|++. +|+...... +..+ ..+.+++|+|||++|+++ .++.|.+| |..+|+.......
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~---~~~g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 349 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGY---QLTG-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI 349 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEE---EECS-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeE---ecCC-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee
Confidence 5 4899999996 454322222 2222 567899999999998885 57889996 5557776554322
Q ss_pred ----eeEEEEE
Q 005342 677 ----ISHIMFV 683 (701)
Q Consensus 677 ----i~~~~fs 683 (701)
++++.|.
T Consensus 350 ~~~~p~~v~~~ 360 (361)
T 3scy_A 350 KVDKPVCLKFV 360 (361)
T ss_dssp ECSSEEEEEEE
T ss_pred eCCCCeEEEEc
Confidence 6677665
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=2.5e-18 Score=179.06 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=172.3
Q ss_pred EEcCCCCe-EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcc
Q 005342 399 TSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 476 (701)
Q Consensus 399 ~~spdg~~-l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~ 476 (701)
.|.+++.+ +++++.++.|.+||.. +++..... . .+...+ +++|+|||+++++++. ++.|.+||.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----~~~~~~~~-~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~------ 69 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----TLEILNQI-T--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET------ 69 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----TCCEEEEE-E--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----ccceeeeE-E--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC------
Confidence 45665555 7788889999999997 56554322 1 234556 9999999998777776 889999965
Q ss_pred ccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEec--CCEEEEEe-C-C--eEEEEeCCCCcEEEEecCCCCCeE
Q 005342 477 LEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d-g--~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
.+++. ... + ..+..+..+++++ |++++++. + + .|.+||+.+++.+..+.. .....
T Consensus 70 ---------------~~~~~~~~~-~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 131 (331)
T 3u4y_A 70 ---------------QLEPPKVVA-I-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAV 131 (331)
T ss_dssp ---------------SSSSCEEEE-E-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEE
T ss_pred ---------------CCCceeEEe-c-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCcc
Confidence 34443 211 2 1234444448898 88888555 3 3 999999999998888774 44568
Q ss_pred EEEEcCCC-eE-EEEeCCCc-EEEEeCCCCceE-----EeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCee
Q 005342 550 YFILLPQD-LF-AFGFDDSS-ILVHCPCTKKTK-----AKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 550 ~l~~spdg-~l-~~gs~dg~-I~iwd~~~~~~~-----~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~ 620 (701)
+++|+|+| ++ +++..++. |.+|++.....+ ..+ .+...+..++|+|+|++++ ++..++.|++||+.+++.
T Consensus 132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999999 44 45566688 999998754332 222 2345689999999999654 555689999999998864
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCce--eeeeee-----------eeEEEEEee
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQVLL-----------ISHIMFVQI 685 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~--~~~l~~-----------i~~~~fs~~ 685 (701)
. ..+..+..+ ..+..++|+|||++++++ .++.|.+||..+++. +..+.. ...++|+|+
T Consensus 211 ~--~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 283 (331)
T 3u4y_A 211 I--TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT 283 (331)
T ss_dssp C--EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT
T ss_pred c--ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC
Confidence 1 112223322 566889999999988764 578899999999887 333332 345788877
Q ss_pred EE
Q 005342 686 VV 687 (701)
Q Consensus 686 ~~ 687 (701)
..
T Consensus 284 g~ 285 (331)
T 3u4y_A 284 ET 285 (331)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=9.5e-19 Score=202.39 Aligned_cols=261 Identities=10% Similarity=0.007 Sum_probs=177.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC--
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-- 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~-- 472 (701)
|.+++|||| ..++.+. ++.+++||+. +++...+.. +...+.+++|||||++|+++ .++.|.+|++.+
T Consensus 84 v~~~~~spd-~~~~~~~-~~~i~~~d~~----~~~~~~l~~----~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFT-QGGLVGFDML----ARKVTYLFD----TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG 152 (706)
T ss_dssp CEEEEETTT-TEEEEEE-TTEEEEEETT----TTEEEEEEC----CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred ceeEEECCC-CeEEEEE-CCEEEEEECC----CCceEEccC----CcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence 899999999 6665554 4999999997 665555432 45668889999999998884 679999998754
Q ss_pred ---CCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec--CCEEEEEe-C---------------------
Q 005342 473 ---NKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--GSHLFSAS-G--------------------- 524 (701)
Q Consensus 473 ---~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s--~~~l~s~s-d--------------------- 524 (701)
+.... +.......+..- .....+...+.+++|+ |++|++++ |
T Consensus 153 ~~~g~~~~----------~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 153 EGMSRAIA----------VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp SCCCCCEE----------SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred ccCCCcEE----------eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 32100 000000000000 0000112235788998 88888775 2
Q ss_pred ------------CeEEEEeCCCCcEEEEec--CCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEeec-
Q 005342 525 ------------GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLK- 583 (701)
Q Consensus 525 ------------g~I~iwd~~~~~~~~~~~--~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~~l~- 583 (701)
..|++||+.+++...... .+...+.+++|+||| .|++++.++ .|++||+.+++....+.
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 579999999887654442 355678999999999 888887775 89999999984333332
Q ss_pred C-CCC---CeEEEEEec--CCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEE-
Q 005342 584 G-HQN---RITCLAYSL--SLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS- 654 (701)
Q Consensus 584 ~-h~~---~V~~v~~sp--dg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~s- 654 (701)
. +.. .+.+++|+| ||+++++++.|+.+++|++. ++. .+..+. .+. ..+.+ ++|+|||+.|+.
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~~l~-~~~---~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIRQVT-KGE---WEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEEECC-CSS---SCEEEEEEECTTSSEEEEE
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEEecC-CCC---eEEEeeeEEcCCCCEEEEE
Confidence 2 222 346789999 99999999999999999876 332 122233 332 56766 799999998876
Q ss_pred E-ecC----eEEEEECCCCceeeeeee---eeEEEEEeeE
Q 005342 655 I-HEG----QIDVYEAPTLNHTSQVLL---ISHIMFVQIV 686 (701)
Q Consensus 655 g-~Dg----~I~iwd~~~g~~~~~l~~---i~~~~fs~~~ 686 (701)
+ .++ .|..||..+++. ..+.. +.+++|||+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg 412 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGKT-KDLTPESGMHRTQLSPDG 412 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCCC-EESCCSSSEEEEEECTTS
T ss_pred ecCCCCceEEEEEEEcCCCCc-eeccCCCceEEEEECCCC
Confidence 4 344 677788877763 33333 8889999874
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=3.8e-18 Score=177.64 Aligned_cols=251 Identities=12% Similarity=0.033 Sum_probs=178.7
Q ss_pred CcccccccCccceeEEEeecCc--ceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMD--WWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLD 376 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~--~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (701)
+.|.+||..+++.+..+..... .+. .++|+|+ +.++.|.+||+.+++....+ ....
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~----------~~~~-- 76 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI----------DLST-- 76 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE----------ECCB--
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCcc--ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE----------EcCC--
Confidence 7899999999999988874432 367 8999998 66889999999998876652 1100
Q ss_pred cccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecCCCCCCCC
Q 005342 377 ASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGR 443 (701)
Q Consensus 377 ~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~ 443 (701)
...|.. +..++|+|||+++++++ .++.|.+||+. +++.... ++ ....
T Consensus 77 ------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~----~~~~~~~-~~---~~~~ 136 (337)
T 1pby_B 77 ------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----TLSRRKA-FE---APRQ 136 (337)
T ss_dssp ------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----TTEEEEE-EE---CCSS
T ss_pred ------------cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC----CCcEEEE-Ee---CCCC
Confidence 000122 55789999999999886 57999999997 5543331 11 1345
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCC-CCCeEEEEec--CCEEE
Q 005342 444 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLF 520 (701)
Q Consensus 444 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~l~~s--~~~l~ 520 (701)
+.+++|+|||++++++ ++.+.+||+.+ ++.... +..+. ..++ .++ |..++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~---------------------~~~~~~-~~~~~~~~~~---~~s~dg~~l~ 189 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEA---------------------GTLVED-KPIQSWEAET---YAQPDVLAVW 189 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTT---------------------TEEEEE-ECSTTTTTTT---BCCCBCCCCC
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCC---------------------CcEeee-eeccccCCCc---eeCCCccEEe
Confidence 7788999999988887 68899997643 332211 11111 1111 233 33332
Q ss_pred EEe--CC-----------------------eEEEEeCCCCcEE-EEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 521 SAS--GG-----------------------KISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 521 s~s--dg-----------------------~I~iwd~~~~~~~-~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
..+ ++ .|.+||+.+++.. ..+..+...+.+++|+|+| +++++ ++.|++||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence 222 11 5899999988764 2233455678899999999 87777 799999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++..
T Consensus 268 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 268 EKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 999888877644 45789999999999998999999999999998644
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=7.4e-18 Score=176.50 Aligned_cols=234 Identities=11% Similarity=0.036 Sum_probs=169.4
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQ 475 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~ 475 (701)
++++++++++++++.++.|.+||+. +++... +.. . ....+..++|+|||+++++++ .++.|.+||.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~----~~~~~~~~~~--~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~----- 72 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVA----SDTVYKSCVM--P-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL----- 72 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT----TTEEEEEEEC--S-SCCSSCEEEECTTSSEEEEEETTTTEEEEEET-----
T ss_pred ccccCCCEEEEEeCCCCeEEEEECC----CCcEEEEEec--C-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeC-----
Confidence 5678899999999999999999997 555433 222 1 112577899999999766554 5889999965
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCC-----CCCeEEEEec--CCEEEEEe-C------------CeEEEEeCCCC
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS-G------------GKISIFSLETF 535 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~l~~s--~~~l~s~s-d------------g~I~iwd~~~~ 535 (701)
.+++.... +...+ ...+.+++|+ |+++++++ + +.|.+||+.++
T Consensus 73 ----------------~t~~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 73 ----------------DTCKNTFH-ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp ----------------TTTEEEEE-EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred ----------------CCCcEEEE-EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 44443321 11111 2236788898 88888887 5 99999999885
Q ss_pred c---EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-------------------------
Q 005342 536 Q---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------------------------- 586 (701)
Q Consensus 536 ~---~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------------------------- 586 (701)
+ .+..+. +...+.+++|+|+| .++ + ++.|++||..+++.+..+..+.
T Consensus 136 ~~~~~~~~~~-~~~~~~~~~~s~dg~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFP-MPRQVYLMRAADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEE-CCSSCCCEEECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeecc-CCCcccceeECCCCcEEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 4 334444 33468899999999 555 3 3459999999988777665331
Q ss_pred -------------------------------------------CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeee
Q 005342 587 -------------------------------------------NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 587 -------------------------------------------~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
..+.+++|+| +|++++++ ++.|++||+.+++...
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345677889 99998888 8899999999986432
Q ss_pred eeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 623 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 623 ~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
. +..+ ..+.+++|+|||++|+++ .++.|++||+.+++.+..++.
T Consensus 290 --~---~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 290 --A---ANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp --E---EECS-----SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred --E---EcCC-----CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 2 2222 446789999999988876 789999999999998887754
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=6.7e-17 Score=169.65 Aligned_cols=262 Identities=7% Similarity=-0.008 Sum_probs=173.4
Q ss_pred ccccccc--CccceeE-EEeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 308 KLKFPSM--DKSRLLS-LIKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 308 ~i~iwd~--~~~~~~~-~l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
.|.+|++ .+++... ....+...+. .++|+|| +.++.|.+||+.++.....-
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~--~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~--------------- 79 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPT--YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN--------------- 79 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCC--CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE---------------
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcc--eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee---------------
Confidence 3445554 4565543 2344556677 8999999 23689999999776642220
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEc-CCCcEEEEeccccCCCCceeEee-cCCCC-------CCCCEE
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLL-LPDNS-------FGGRVV 445 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s-~d~~v~iw~~~~~~~~~~~~~l~-~~~~~-------~~~~v~ 445 (701)
.+..+.. +..++|+|||++|++++ .++.+.+|++.. .+....+. ....+ ....+.
T Consensus 80 ------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~---~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 80 ------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA---DGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp ------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT---TSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred ------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC---CCCeeecceeecCCCCCCccccCCCce
Confidence 0112333 67899999999888887 779999999963 23322222 11111 123588
Q ss_pred EEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec--CCEEEEE
Q 005342 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSHLFSA 522 (701)
Q Consensus 446 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s--~~~l~s~ 522 (701)
+++|+|||+.+++...++.+.+|++.. ++.+.. ..+.......+..++|+ |++++++
T Consensus 145 ~~~~spdg~l~v~~~~~~~v~~~~~~~--------------------~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~ 204 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDLGSDKVYVYNVSD--------------------AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA 204 (347)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECT--------------------TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCcEEEEeCCCCEEEEEEECC--------------------CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE
Confidence 999999999555555588999998731 222111 00111223467789999 7766665
Q ss_pred e--CCeEEEEeCCC--CcE--EEEecCCC------CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCC---CceEEeecCC
Q 005342 523 S--GGKISIFSLET--FQT--LATFANPP------PIATYFILLPQD-LF-AFGFDDSSILVHCPCT---KKTKAKLKGH 585 (701)
Q Consensus 523 s--dg~I~iwd~~~--~~~--~~~~~~~~------~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~~---~~~~~~l~~h 585 (701)
+ ++.|.+|++.. ++. +..+.... ..+..++|+||| ++ +++..++.|.+||+.. .+.+..+..+
T Consensus 205 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 284 (347)
T 3hfq_A 205 GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE 284 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence 4 79999999874 442 23333222 347899999999 66 5666789999999873 2456666666
Q ss_pred CCCeEEEEEecCCCEEEEEeC-CCeEEEE--ECCCCeee
Q 005342 586 QNRITCLAYSLSLNVLVSSGA-DAQLCVW--DAVGWKKL 621 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s~s~-D~~I~vw--d~~~g~~~ 621 (701)
...+..++|+|||++|++++. ++.|.+| |..+|+..
T Consensus 285 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 285 GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 667899999999998887775 4899999 55667543
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=9.6e-19 Score=202.82 Aligned_cols=290 Identities=12% Similarity=0.040 Sum_probs=193.1
Q ss_pred EEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeE
Q 005342 334 CINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSA 407 (701)
Q Consensus 334 ~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l 407 (701)
.++|+|| +.|++|++||+.+++.... +.++.. ....+.+++|||||++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~----------~~~~~~---------------~~~~~~~~~~SpDg~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTI----------LSNRTM---------------KSVNASNYGLSPDRQFV 74 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEE----------ECHHHH---------------HTTTCSEEEECTTSSEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEE----------Eccccc---------------cccceeeEEECCCCCeE
Confidence 6788888 5799999999999987665 222110 00126789999999999
Q ss_pred EEEcC---------CCcEEEEeccccCCCCce---eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 408 VCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 408 ~s~s~---------d~~v~iw~~~~~~~~~~~---~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
++++. ++.+++||+. +++. .. + ...+.+++|||||+.|++++ ++.|++|++.++..
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~----~g~~~~~~~--l-----~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLS----NGEFVRGNE--L-----PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETT----TTEECCSSC--C-----CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred EEEecCceeEEeecceEEEEEECC----CCcccccee--c-----CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 99876 7899999997 6654 22 1 25688899999999998875 78999997644321
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCC---------CCeEEEEec--CCEEEEEe-CC------------------
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPK---------DSISCFALR--GSHLFSAS-GG------------------ 525 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------~~v~~l~~s--~~~l~s~s-dg------------------ 525 (701)
.. ... +.....+. .++. ....+++|| |++|++++ |.
T Consensus 143 ~~--l~~-------~~~~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 143 FQ--ITF-------NGRENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp EE--CCC-------CCBTTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred EE--Eec-------CCCcCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 00 000 00000000 0111 122478999 88888877 42
Q ss_pred ----------------eEEEEeCCCCcEE--------EEecCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEe----
Q 005342 526 ----------------KISIFSLETFQTL--------ATFANPPPIATYFILLPQD-LFAFGFDDS----SILVHC---- 572 (701)
Q Consensus 526 ----------------~I~iwd~~~~~~~--------~~~~~~~~~i~~l~~spdg-~l~~gs~dg----~I~iwd---- 572 (701)
.|++||+.+++.. ..+.++...+.+++|+||+ ++++....+ .|++||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence 7899999887643 1233567788999999999 776644332 489999
Q ss_pred CCCCceEEee----cCCCCCeE-----EEEEecCCCEEEE--EeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCC
Q 005342 573 PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 639 (701)
Q Consensus 573 ~~~~~~~~~l----~~h~~~V~-----~v~~spdg~~l~s--~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~ 639 (701)
..+++....+ .+|.+.+. .++|+|||+.++. +..++ .|++||+.+++. .. +..+. ..
T Consensus 289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~---lt~~~----~~ 358 (719)
T 1z68_A 289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQ---ITSGK----WE 358 (719)
T ss_dssp SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EE---CSCSS----SC
T ss_pred CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Ee---cccCc----eE
Confidence 8888776666 46777776 8899999995543 44555 678888877641 22 22222 56
Q ss_pred eEEEEEcCCCCEEEE-Ee-----cCeEEEEECCC--Cc-eeeeee-------e-eeEEEEEee
Q 005342 640 VNHIQFHPDQIHLLS-IH-----EGQIDVYEAPT--LN-HTSQVL-------L-ISHIMFVQI 685 (701)
Q Consensus 640 v~~v~~spdg~~l~s-g~-----Dg~I~iwd~~~--g~-~~~~l~-------~-i~~~~fs~~ 685 (701)
+..+.++ +++.++. +. ++..++|.+.. +. ....+. . +..+.|||+
T Consensus 359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~d 420 (719)
T 1z68_A 359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDY 420 (719)
T ss_dssp EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGG
T ss_pred EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCC
Confidence 7888888 8887776 43 37788888753 42 122222 1 667888875
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.7e-18 Score=191.97 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=183.4
Q ss_pred ceeeeEEEEccC-------CC-CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEE
Q 005342 329 WWVPYCINVMPN-------AN-NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SREST 399 (701)
Q Consensus 329 ~v~~~~l~fspd-------s~-d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~ 399 (701)
.|+ +++|+|| +. |++++||++.++...+.. ..+.. +..++
T Consensus 23 ~~~--~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----------------------------~~~~~~~~~~~ 71 (582)
T 3o4h_A 23 EKY--SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----------------------------REPINSVLDPH 71 (582)
T ss_dssp CEE--EEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----------------------------SSCCSEECEEC
T ss_pred chh--eeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----------------------------ccccccccccc
Confidence 577 9999999 33 899999999776654431 12324 88999
Q ss_pred EcCCCCeEEEEcC---CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCc
Q 005342 400 SLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 400 ~spdg~~l~s~s~---d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~ 475 (701)
|+|| +.+++++. +....+|.+......+. ..+. ....+...+|+|||+.+ ++.+.++.+.+||+
T Consensus 72 ~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~-----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~----- 139 (582)
T 3o4h_A 72 YGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLE-----AVKPMRILSGVDTGEAVVFTGATEDRVALYAL----- 139 (582)
T ss_dssp TTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-EECT-----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEE-----
T ss_pred CCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-cccc-----CCCCceeeeeCCCCCeEEEEecCCCCceEEEc-----
Confidence 9999 77777764 55567766642111222 2221 12334567899998743 33344555558865
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEecCCCCCe
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA 548 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~~~~~~i 548 (701)
.+++... +...+ . .+++|| |+++++++ + +.|++||+.+++.. .+..+...+
T Consensus 140 ----------------~~g~~~~--l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~ 197 (582)
T 3o4h_A 140 ----------------DGGGLRE--LARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF 197 (582)
T ss_dssp ----------------ETTEEEE--EEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred ----------------cCCcEEE--eecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence 4444332 11112 2 688888 99999776 6 68999999888754 567788889
Q ss_pred EEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEeecCCCCCeEEEE--------EecCCCEEEEEeCCCeEEEEECCC
Q 005342 549 TYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLA--------YSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 549 ~~l~~spdg-~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~--------~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
..++||||| .|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||.++++++.|+++++|++
T Consensus 198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 999999999 888888888 8999999998887 7778887777777 9999999999999999999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC---eEEEEECCC
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG---QIDVYEAPT 667 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg---~I~iwd~~~ 667 (701)
|+... ... +.+.+++|+ +|++++++ .+. .+.+||..+
T Consensus 275 g~~~~---------~~~---~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 GERVE---------APQ---GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEC---------CCS---SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCeec---------cCC---CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 54221 111 668899999 99988874 443 477777643
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=199.67 Aligned_cols=325 Identities=8% Similarity=-0.017 Sum_probs=216.8
Q ss_pred CcccccccCccceeEEEeecCc---ceeeeEEEEccC-------CC---------CCeEEEEeccCCccccccccccCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMD---WWVPYCINVMPN-------AN---------NETISLKDFPTVSNLRYASSILTDK 367 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~---~v~~~~l~fspd-------s~---------d~~i~lWd~~~~~~~~~~~~~~~~~ 367 (701)
+.|++||..+++....+.+|.. .+. +++|||| +. +++|++||+.+++.+...
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~------- 106 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNAS--NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN------- 106 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCS--EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-------
T ss_pred CCEEEEEcCCCcEEEEEcccccccccee--eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-------
Confidence 7899999999999888877654 377 9999999 22 689999999998763210
Q ss_pred CCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCE---
Q 005342 368 PNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV--- 444 (701)
Q Consensus 368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v--- 444 (701)
.+. ..+..++|||||+.||++. ++.|++|++. +++...+. ..++...|
T Consensus 107 -~l~---------------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~----~g~~~~l~--~~~~~~~v~~g 157 (719)
T 1z68_A 107 -ELP---------------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRP----GDPPFQIT--FNGRENKIFNG 157 (719)
T ss_dssp -CCC---------------------SSBCCEEECSSTTCEEEEE-TTEEEEESST----TSCCEECC--CCCBTTTEEES
T ss_pred -ecC---------------------cccccceECCCCCEEEEEE-CCeEEEEeCC----CCCcEEEe--cCCCcCCeEcc
Confidence 010 1156799999999999986 6899999997 55544432 12222222
Q ss_pred --------------EEEEEecCCCEEEEEECC-CcEEEEecCCCC---c---------cccccccceeeEEeeCCCCeEE
Q 005342 445 --------------VRLIYSHSGDFLVALTQT-ATHKLWKWQSNK---Q---------SLEEENVNMESQLYQPSSKLVM 497 (701)
Q Consensus 445 --------------~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~---~---------~~g~~~~~~~i~~~d~~~~~~~ 497 (701)
.+++|||||++|++++.| +.+.+|.+.... . ..|.......+.+||..++...
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 489999999999998865 444444331100 0 2233334456788898887642
Q ss_pred ---eecc---cCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEe----CCCCcEEEEe----cCCCCCeE-----EE
Q 005342 498 ---TNDI---AADPKDSISCFALR--GSHLFSAS-G----GKISIFS----LETFQTLATF----ANPPPIAT-----YF 551 (701)
Q Consensus 498 ---~~~~---~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd----~~~~~~~~~~----~~~~~~i~-----~l 551 (701)
.... ..+|...+.+++|+ ++++++.. . ..|.+|| ..+++....+ .++...+. .+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc
Confidence 1000 01467789999999 55555533 2 3589999 8777765544 35666665 88
Q ss_pred EEcCCC-eEEE--EeCCC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCC--Ce
Q 005342 552 ILLPQD-LFAF--GFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVG--WK 619 (701)
Q Consensus 552 ~~spdg-~l~~--gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~--g~ 619 (701)
+|+||| .++. +..+| .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+.. +.
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYP 395 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 999999 5443 44555 68888987776 45566666678888888 88877766654 7888888764 31
Q ss_pred eeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ec--CeEEEEECCCCceeeeee
Q 005342 620 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 620 ~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~D--g~I~iwd~~~g~~~~~l~ 675 (701)
. ....+.....++. ..+..+.|+||+++++. + .+ ..+.+||+.+|++++.+.
T Consensus 396 ~-~~~~l~~~~~~~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 396 P-SKKCVTCHLRKER---CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp C-CEEESSTTTTTTT---BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred C-CceeccCccCCCC---CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 1 0122220011233 67889999999988775 3 22 468999998888665443
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=2.5e-18 Score=186.42 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=153.7
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc--ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--C
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 516 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~--~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~ 516 (701)
...+..+++++++.++++++.++ +++|+....... .+.... .+........ + .+...|.+++|+ |
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~--~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN----KIVDKVQGLL----V--PMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT----CEEECCCCEE----E--CCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc----cccccCcccc----c--cCCCcccEEEEcCCC
Confidence 34678899999999999999888 888865221000 000000 0000000000 1 356789999999 8
Q ss_pred CEEE----EEe-CCeEEEEeCCCC--------c---EEEEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCce
Q 005342 517 SHLF----SAS-GGKISIFSLETF--------Q---TLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKT 578 (701)
Q Consensus 517 ~~l~----s~s-dg~I~iwd~~~~--------~---~~~~~~~~~~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~ 578 (701)
++|+ +++ |+.|++||+.++ + ....+.+|...|.+++|+|+ + ++++++.||+|++||++++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 8888 677 899999998654 2 24556678899999999998 5 999999999999999999877
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e
Q 005342 579 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 656 (701)
Q Consensus 579 ~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~ 656 (701)
+....+|...|++++|+|+|++|++|+.||+|++||++ ++.. ..+......+..+...|.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777899999999999999999999999999999998 4322 22220000000011489999999999888763 3
Q ss_pred cC------eEEEEECCCC
Q 005342 657 EG------QIDVYEAPTL 668 (701)
Q Consensus 657 Dg------~I~iwd~~~g 668 (701)
|| .+++|++.+.
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 43 3899999765
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=6.9e-18 Score=182.90 Aligned_cols=254 Identities=8% Similarity=-0.025 Sum_probs=170.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCC-------CceeEeec-CCCCCCCCEEEEEEecCCCEEE----EEECC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------SECRTLLL-PDNSFGGRVVRLIYSHSGDFLV----ALTQT 462 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~-------~~~~~l~~-~~~~~~~~v~~l~~spdg~~l~----s~s~d 462 (701)
++.+++++++.++++++.|+ +++|+....... ........ ....+...|.+++|+|+|++|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 66799999999999999887 899886532110 11111000 0002456799999999999999 67779
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeC-CCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcE
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQP-SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT 537 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~ 537 (701)
+.|++||+.+... +.. .. ..-.... ...+|...|.+++|+ +.++++++ ||.|++||++++..
T Consensus 118 ~~v~iwd~~~~~~--~~~---------~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 118 SIIAFFDVRTFSN--EAK---------QQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEEHHHHHC--TTC---------SSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred ceEEEEEcccccc--CCc---------CCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999998743200 000 00 0000111 224688999999999 57899998 99999999999877
Q ss_pred EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------CCCeEEEEEecCCCEEEE-EeCCC
Q 005342 538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNVLVS-SGADA 608 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~v~~spdg~~l~s-~s~D~ 608 (701)
+....+|...|++++|+|+| +|++|+.||.|++||++ ++....+..| ...|.+++|++++.++++ ++.||
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 76677788899999999999 99999999999999998 5555555443 237999999999887754 44453
Q ss_pred ------eEEEEECCCCeee---eeeeeeecc---CCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 609 ------QLCVWDAVGWKKL---CSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 609 ------~I~vwd~~~g~~~---~~~~l~~~~---~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
.+++|++...... ....+..+. ++.. .+-..+.+-++.++++++ ..+.|.|....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 3999999864211 001111010 1222 333445555887777764 45557776653
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=3.5e-16 Score=165.12 Aligned_cols=255 Identities=11% Similarity=0.069 Sum_probs=168.5
Q ss_pred CCeEEEE----cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC----CcEEEEecCCCCc
Q 005342 404 ADSAVCA----KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSNKQ 475 (701)
Q Consensus 404 g~~l~s~----s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~~ 475 (701)
..+++.| +.++.|.+|.++. .+++...+... +...+..++|+|||++|++++.+ +.+.+|++
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~--~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~----- 82 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNE--ETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF----- 82 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEET--TTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEE-----
T ss_pred ceEEEEEeccCCCCCCEEEEEEeC--CCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEE-----
Confidence 3445555 3467899998752 13444443321 45667789999999999999886 79999977
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe--CCeEEEEeCCCCcEEEE------ecC----
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT------FAN---- 543 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s--dg~I~iwd~~~~~~~~~------~~~---- 543 (701)
+..++.+........+......++++++++++++ ++.|.+|++.+...+.. ..+
T Consensus 83 --------------~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~ 148 (361)
T 3scy_A 83 --------------DKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD 148 (361)
T ss_dssp --------------ETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred --------------eCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence 5554543211010123445666777777777766 79999999975432211 111
Q ss_pred ----CCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc-------eE------EeecCCCCCeEEEEEecCCCEEEEE
Q 005342 544 ----PPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK-------TK------AKLKGHQNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 544 ----~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~-------~~------~~l~~h~~~V~~v~~spdg~~l~s~ 604 (701)
+...+.+++|+|+| +++++ ..++.|++|++.... .. .....+...+..++|+|||++++++
T Consensus 149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 228 (361)
T 3scy_A 149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI 228 (361)
T ss_dssp TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE
Confidence 12235789999999 56554 458899999877533 11 1112244567899999999988777
Q ss_pred e-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e-cCeEEEEECC--CCc--eeeeeee
Q 005342 605 G-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAP--TLN--HTSQVLL 676 (701)
Q Consensus 605 s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~-Dg~I~iwd~~--~g~--~~~~l~~ 676 (701)
+ .++.|.+||+.++.......+.....+. .....++|+|||++|+++ . ++.|.+|++. +|+ .+..+..
T Consensus 229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~----~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 229 NEIGGTVIAFRYADGMLDEIQTVAADTVNA----QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp ETTTCEEEEEEEETTEEEEEEEEESCSSCC----CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred cCCCCeEEEEEecCCceEEeEEEecCCCCC----CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence 6 6899999999987644333343222222 556899999999998774 3 5789999995 455 4444443
Q ss_pred ---eeEEEEEeeE
Q 005342 677 ---ISHIMFVQIV 686 (701)
Q Consensus 677 ---i~~~~fs~~~ 686 (701)
+.+++|+|+.
T Consensus 305 g~~~~~~~~spdg 317 (361)
T 3scy_A 305 GIHPRNFIITPNG 317 (361)
T ss_dssp SSCCCEEEECTTS
T ss_pred CCCCceEEECCCC
Confidence 7889998874
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.4e-16 Score=184.97 Aligned_cols=322 Identities=8% Similarity=-0.040 Sum_probs=211.7
Q ss_pred CcccccccCccceeEEEeecCcceee---eEEEEccC-------CCC---------CeEEEEeccCCccccccccccCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVP---YCINVMPN-------ANN---------ETISLKDFPTVSNLRYASSILTDK 367 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~---~~l~fspd-------s~d---------~~i~lWd~~~~~~~~~~~~~~~~~ 367 (701)
+.|++||+.++++...+.+|...... ..++|||| +.+ +.+.+||+.+++....
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-------- 107 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-------- 107 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc--------
Confidence 78999999999999999888754320 13788999 222 6677999999876543
Q ss_pred CCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCE--
Q 005342 368 PNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRV-- 444 (701)
Q Consensus 368 ~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v-- 444 (701)
..|.. +..++|||||+.||.+. |+.|++|++. ++...+++. .++...+
T Consensus 108 ----------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~----~~~~~~lt~--~g~~~~~~~ 158 (740)
T 4a5s_A 108 ----------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP----NLPSYRITW--TGKEDIIYN 158 (740)
T ss_dssp ----------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST----TSCCEECCS--CCBTTTEEE
T ss_pred ----------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECC----CCceEEEcC--CCCccceec
Confidence 23445 88999999999999985 5899999997 565555432 2232223
Q ss_pred ---------------EEEEEecCCCEEEEEECC-CcEEEEecCCCCc--------------cccccccceeeEEeeCCC-
Q 005342 445 ---------------VRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQ--------------SLEEENVNMESQLYQPSS- 493 (701)
Q Consensus 445 ---------------~~l~~spdg~~l~s~s~d-g~i~vwd~~~~~~--------------~~g~~~~~~~i~~~d~~~- 493 (701)
.+++|||||++|+.++.| +.+.+|++..... ..|.......+.+||..+
T Consensus 159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 358999999999998875 4488887632111 345555566789999998
Q ss_pred --C---eEEeecccC-----CCCCCeEEEEec--CCEEEEEe--C---CeEEEEeCCCCc----EE--EEe--cCCCCCe
Q 005342 494 --K---LVMTNDIAA-----DPKDSISCFALR--GSHLFSAS--G---GKISIFSLETFQ----TL--ATF--ANPPPIA 548 (701)
Q Consensus 494 --~---~~~~~~~~~-----~~~~~v~~l~~s--~~~l~s~s--d---g~I~iwd~~~~~----~~--~~~--~~~~~~i 548 (701)
+ .... +.. ++...+..++|+ |+.++... + ..|++||+.+++ +. ..+ .++...+
T Consensus 239 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v 316 (740)
T 4a5s_A 239 SSVTNATSIQ--ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV 316 (740)
T ss_dssp CSSSCCCEEE--ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred CCCCcceEEE--ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence 7 4332 211 367789999999 66555543 2 479999998887 22 222 3344444
Q ss_pred E-----EEEEcCCC-eEE-EEe-CCC--cEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-----C--eEE
Q 005342 549 T-----YFILLPQD-LFA-FGF-DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----A--QLC 611 (701)
Q Consensus 549 ~-----~l~~spdg-~l~-~gs-~dg--~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D-----~--~I~ 611 (701)
. .++|+||| .++ ..+ .+| .|++||..+++...... ....|..+. .+|++.|+..+.. + .|+
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly 394 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLY 394 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEE
T ss_pred ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEE
Confidence 3 78999999 655 555 444 68999988776654433 344566654 3557766544433 2 455
Q ss_pred EEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe----cCeEEEEECCCCceeeee
Q 005342 612 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 612 vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~----Dg~I~iwd~~~g~~~~~l 674 (701)
..++.++... ..+..-..+.. .....+.|||++++++... -..+.+++..+++.+..+
T Consensus 395 ~v~~~g~~~~--~~lt~~~~~~~---~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 395 KIQLIDYTKV--TCLSCELNPER---CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEETTEEEEE--EESSTTTSTTT---BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEECCCCCcc--eeeccccCCCC---CceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 5555543211 12220001122 5688999999999887642 236889999888766554
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=1.4e-16 Score=184.98 Aligned_cols=306 Identities=9% Similarity=0.025 Sum_probs=184.8
Q ss_pred EEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeE
Q 005342 334 CINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSA 407 (701)
Q Consensus 334 ~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l 407 (701)
.++|+|| +.|++|++||+.++++... +.+|.. ..+.. ...++|||||++|
T Consensus 21 ~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~--------------~~~~~~~~~~~~Spdg~~l 76 (740)
T 4a5s_A 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVF----------LENSTF--------------DEFGHSINDYSISPDGQFI 76 (740)
T ss_dssp CEEECSSSEEEEEETTEEEEEETTTCCEEEE----------ECTTTT--------------TTCCSCCCEEEECTTSSEE
T ss_pred ccEECCCCcEEEEcCCcEEEEECCCCceEEE----------Eechhh--------------hhhcccccceEECCCCCEE
Confidence 7889998 4599999999999998766 444432 11222 3458999999999
Q ss_pred EEEcCC---------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc---
Q 005342 408 VCAKSL---------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ--- 475 (701)
Q Consensus 408 ~s~s~d---------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~--- 475 (701)
+.++.+ +.+.+||+. ++++..+ ..+...+...+|||||+.|+.+ .++.|++|+..++..
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~----~~~~~~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLN----KRQLITE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETT----TTEECCS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEECCeeeEEEccceEEEEEECC----CCcEEEc----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE
Confidence 999876 556799998 6655442 2356789999999999999887 468999998765443
Q ss_pred -cccccccc----------------eeeEEeeCCCCeEEeecccCC---------------CCCCeEEEEec--CCEEEE
Q 005342 476 -SLEEENVN----------------MESQLYQPSSKLVMTNDIAAD---------------PKDSISCFALR--GSHLFS 521 (701)
Q Consensus 476 -~~g~~~~~----------------~~i~~~d~~~~~~~~~~~~~~---------------~~~~v~~l~~s--~~~l~s 521 (701)
..|..... .....|.++...+........ +...+..+.+. |..
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~--- 224 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV--- 224 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC---
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc---
Confidence 11111000 001233333332221100000 00001111111 000
Q ss_pred Ee-CCeEEEEeCCC---Cc--EEEEec------CCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCc----eE-
Q 005342 522 AS-GGKISIFSLET---FQ--TLATFA------NPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKK----TK- 579 (701)
Q Consensus 522 ~s-dg~I~iwd~~~---~~--~~~~~~------~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~----~~- 579 (701)
. ...|++||+.+ ++ ....+. ++...+..++|+||| .++..... ..|++||+.+++ +.
T Consensus 225 -~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp -CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred -CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 0 12689999988 73 223333 266678999999999 66554332 379999999887 22
Q ss_pred -Eee--cCCCCCeE-----EEEEecCCCEEE-EEeCC---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC
Q 005342 580 -AKL--KGHQNRIT-----CLAYSLSLNVLV-SSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 647 (701)
Q Consensus 580 -~~l--~~h~~~V~-----~v~~spdg~~l~-s~s~D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp 647 (701)
..+ .+|.+.|. .++|+|||+.++ ..+.+ ..|++||+.+++.. . +..+. ..|..+.+ +
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---~---lT~g~----~~v~~~~~-~ 372 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---F---ITKGT----WEVIGIEA-L 372 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---E---SCCSS----SCEEEEEE-E
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---e---cccCC----EEEEEEEE-E
Confidence 222 45666555 789999999877 66643 47999999886422 1 33343 55666543 5
Q ss_pred CCCEEEE-Eec-----C--eEEEEECCCCceeeeee-------e-eeEEEEEeeEE
Q 005342 648 DQIHLLS-IHE-----G--QIDVYEAPTLNHTSQVL-------L-ISHIMFVQIVV 687 (701)
Q Consensus 648 dg~~l~s-g~D-----g--~I~iwd~~~g~~~~~l~-------~-i~~~~fs~~~~ 687 (701)
|++.|+. +.. + .|+..++..++....+. + ...+.|||+..
T Consensus 373 d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 373 TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence 5777665 432 2 45555655444332332 2 77788887643
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=3e-16 Score=164.18 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=156.4
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC-ceEEEEEcCCCCeE-EEEcCCCcEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN-QSRESTSLPDADSA-VCAKSLEKSVN 418 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~-~V~~l~~spdg~~l-~s~s~d~~v~i 418 (701)
+.+++|.+||+.+++....+ ..+ +. .+..++|+|+|+++ +++..++.|.+
T Consensus 18 ~~~~~v~~~d~~~~~~~~~~----------~~~------------------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 18 NYPNNLHVVDVASDTVYKSC----------VMP------------------DKFGPGTAMMAPDNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp ETTTEEEEEETTTTEEEEEE----------ECS------------------SCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCeEEEEECCCCcEEEEE----------ecC------------------CCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence 56899999999998876652 111 11 25578999999865 45667899999
Q ss_pred EeccccCCCCceeE-eecCCCCC----CCCEEEEEEecCCCEEEEEECC------------CcEEEEecCCCCccccccc
Q 005342 419 LKLQLINEPSECRT-LLLPDNSF----GGRVVRLIYSHSGDFLVALTQT------------ATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 419 w~~~~~~~~~~~~~-l~~~~~~~----~~~v~~l~~spdg~~l~s~s~d------------g~i~vwd~~~~~~~~g~~~ 481 (701)
||+. +++... +.. ... ...+.+++|+|||+++++++.+ +.|.+||+.++..
T Consensus 70 ~d~~----t~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------ 137 (349)
T 1jmx_B 70 IDLD----TCKNTFHANL--SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------ 137 (349)
T ss_dssp EETT----TTEEEEEEES--CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG------
T ss_pred EeCC----CCcEEEEEEc--ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc------
Confidence 9997 554332 222 110 2236789999999999998865 8899997643210
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEEEEecCCC--------------
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPP-------------- 545 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~-------------- 545 (701)
...+.. + .+...+.+++|+ |+ +++++ +.|.+||..+++.+..+..+.
T Consensus 138 ------------~~~~~~-~--~~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 138 ------------AKPVRT-F--PMPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp ------------BCCSEE-E--ECCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred ------------cceeee-c--cCCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccCCccccCccceee
Confidence 010100 1 123357788898 66 55544 349999999888777664321
Q ss_pred ------------------------------------------------------CCeEEEEEcC-CC-eEEEEeCCCcEE
Q 005342 546 ------------------------------------------------------PIATYFILLP-QD-LFAFGFDDSSIL 569 (701)
Q Consensus 546 ------------------------------------------------------~~i~~l~~sp-dg-~l~~gs~dg~I~ 569 (701)
..+..++++| +| +++++ ++.|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA 278 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence 1345677889 99 77777 88999
Q ss_pred EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeee
Q 005342 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.+
T Consensus 279 ~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 9999999988877643 45789999999998888888999999999998644
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=7.1e-16 Score=164.25 Aligned_cols=305 Identities=11% Similarity=0.027 Sum_probs=182.3
Q ss_pred ccccCccceeEEEeecCcceeeeE-----EEEccC-------C-CCC--eEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 311 FPSMDKSRLLSLIKQIMDWWVPYC-----INVMPN-------A-NNE--TISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 311 iwd~~~~~~~~~l~~h~~~v~~~~-----l~fspd-------s-~d~--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
.+|..++..+..+..|..... . .+|||| + .++ .|.+||+.+++.... ..
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l----------t~---- 77 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCH--RNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL----------TE---- 77 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEE--CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC----------CC----
T ss_pred EecCCCCcceEEecCCccccc--chhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe----------ee----
Confidence 456778888888888876555 4 789999 2 255 488889888876655 22
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEE--EEecC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL--IYSHS 452 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l--~~spd 452 (701)
+|.. +..++|+|||+.|+.++.++.+++||+. +++...+.. .+...+... .++||
T Consensus 78 ---------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~----~g~~~~~~~---~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 78 ---------------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA----TLEENVVYQ---VPAEWVGYGTWVANSD 135 (388)
T ss_dssp ---------------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE---CCTTEEEEEEEEECTT
T ss_pred ---------------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECC----CCcceeeee---chhhcccccceeECCC
Confidence 2222 3356799999999999999999999998 565544331 133334333 34899
Q ss_pred CCEEEEEECCCcEEEEecCCCCc---cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CC
Q 005342 453 GDFLVALTQTATHKLWKWQSNKQ---SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GG 525 (701)
Q Consensus 453 g~~l~s~s~dg~i~vwd~~~~~~---~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg 525 (701)
|+.++....++.- |....... ..........+.+||..+++... + ..+...+..++|+ |+.|+.+. ++
T Consensus 136 g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l-~~~~~~~~~~~~sp~dg~~l~~~~~~~ 210 (388)
T 3pe7_A 136 CTKLVGIEIRRED--WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--I-LQENQWLGHPIYRPYDDSTVAFCHEGP 210 (388)
T ss_dssp SSEEEEEEEEGGG--CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--E-EEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred CCeeccccccCcc--cccccccchhhhhhccCCcceEEEEECCCCceEE--e-ecCCccccccEECCCCCCEEEEEEecC
Confidence 9987753211000 00000000 00000011234455777776443 2 1345568888887 66777665 32
Q ss_pred ------eEEEEeCCCCcEEEEecCCC--CCeEEEEEcCCC-eEEEEeC-CC----cEEEEeCCCCceE--EeecCCCCC-
Q 005342 526 ------KISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFD-DS----SILVHCPCTKKTK--AKLKGHQNR- 588 (701)
Q Consensus 526 ------~I~iwd~~~~~~~~~~~~~~--~~i~~l~~spdg-~l~~gs~-dg----~I~iwd~~~~~~~--~~l~~h~~~- 588 (701)
.|.++|..++.. ..+..+. ..+..++|+||| .|+..+. ++ .|++||+.+++.. ..+.++...
T Consensus 211 ~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 289 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM 289 (388)
T ss_dssp TTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE
T ss_pred CCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee
Confidence 788888865543 4444343 257789999999 6654333 22 3999999988743 333331110
Q ss_pred --eEEEEEecCCCEEEEE---------eCCCeEEEEECCCCeeeeeeeeeeccCCCC-------CCCCCeEEEEEcCCCC
Q 005342 589 --ITCLAYSLSLNVLVSS---------GADAQLCVWDAVGWKKLCSKFLHSFQTGLV-------PETTIVNHIQFHPDQI 650 (701)
Q Consensus 589 --V~~v~~spdg~~l~s~---------s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~-------~~~~~v~~v~~spdg~ 650 (701)
....+|+|||+.|+.. ..+..|++||+.+++.. .+. .+.. .....+.+++|+|||+
T Consensus 290 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~ 363 (388)
T 3pe7_A 290 SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH---RVA---RHDTSWKVFEGDRQVTHPHPSFTPDDK 363 (388)
T ss_dssp ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE---EEE---ECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE---Eec---cccCcccccccccccCCCCccCCCCCC
Confidence 1223799999987753 45679999999997532 222 1110 0001478899999999
Q ss_pred EEEE-E-ecCeEEEEEC
Q 005342 651 HLLS-I-HEGQIDVYEA 665 (701)
Q Consensus 651 ~l~s-g-~Dg~I~iwd~ 665 (701)
.|+. + .++...||.+
T Consensus 364 ~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 364 QILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEEECTTSSCEEEEE
T ss_pred EEEEEecCCCceeEEEE
Confidence 8887 4 4666555544
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.7e-14 Score=146.76 Aligned_cols=243 Identities=11% Similarity=0.064 Sum_probs=171.3
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecC--CCCCCCCEEEEEEe-cCCCEEEEEEC-CCcE
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP--DNSFGGRVVRLIYS-HSGDFLVALTQ-TATH 465 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~--~~~~~~~v~~l~~s-pdg~~l~s~s~-dg~i 465 (701)
++-. +.+++++|+|+++++...++.|.+|+.. ......+... ...+...+.+++++ ++|+.+++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE----GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT----SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC----CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 4445 8899999999999998889999999975 3332332211 11234578999995 67765555533 7888
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.+||. ++..+.. +...+...+.+++++ |+.+++.. ++.|.+||. +++.+..+.
T Consensus 103 ~~~d~----------------------~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 158 (286)
T 1q7f_A 103 QIYNQ----------------------YGQFVRK-FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG 158 (286)
T ss_dssp EEECT----------------------TSCEEEE-ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred EEECC----------------------CCcEEEE-ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeC
Confidence 88852 2332221 222344568899998 66666655 789999996 566666664
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCCC-eEEEEECC
Q 005342 543 --NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADA-QLCVWDAV 616 (701)
Q Consensus 543 --~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~v~~spdg~~l~s~s~D~-~I~vwd~~ 616 (701)
.+...+..++++|+| ++++.+.++.|++||. +++.+..+..+ ...+..++++|+|+++++...++ .|++||..
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 344568999999999 8888888999999997 55666666543 35789999999999888888886 99999965
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
++.. ..+. .+.. ...+.+++++|+|++++++.|++|++|++....+
T Consensus 238 -g~~~--~~~~---~~~~--~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 238 -GQLI--SALE---SKVK--HAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP 283 (286)
T ss_dssp -SCEE--EEEE---ESSC--CSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred -CCEE--EEEc---ccCC--CCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence 4322 2222 1111 0457899999999887777789999999866543
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=3.1e-16 Score=167.01 Aligned_cols=253 Identities=11% Similarity=-0.010 Sum_probs=162.4
Q ss_pred EEEcCCCCeEEEEcC-CCc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 398 STSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 398 l~~spdg~~l~s~s~-d~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
++|+|||++|+.++. ++. |.+||+. +++...+. .++...+....|+|||+.|+.++.++.+.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~----~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-- 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLN----TQVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-- 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETT----TCEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT--
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCC----CCceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 789999999999887 664 7778886 66655533 23444444678999999999999999999997633
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe--c--CCEEEEE----------------------e-CCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKI 527 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~--s--~~~l~s~----------------------s-dg~I 527 (701)
++... +...+...+....+ + +..++.. . +..|
T Consensus 112 -------------------g~~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 112 -------------------LEENV--VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp -------------------CCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred -------------------Cccee--eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 33211 00123333333333 4 5555531 2 4789
Q ss_pred EEEeCCCCcEEEEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEeecCCC--CCeEEEEEecC
Q 005342 528 SIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLS 597 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~d------g~I~iwd~~~~~~~~~l~~h~--~~V~~v~~spd 597 (701)
++||+.+++..... .+...+..++|+| || .|+..+.+ ..|+++|..++.... +..+. ..+..++|+||
T Consensus 171 ~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 171 MRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTT
T ss_pred EEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCC
Confidence 99999988755443 3566789999999 99 77776653 378899987665443 44343 25788899999
Q ss_pred CCEEEEEeC--C---CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE----------ecCeEEE
Q 005342 598 LNVLVSSGA--D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDV 662 (701)
Q Consensus 598 g~~l~s~s~--D---~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg----------~Dg~I~i 662 (701)
|+.|+..+. + ..|++||+.+|+........ ++.........+.|+|||+.|+.. .+..|++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP----ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC----CEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC----CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 997765443 2 24999999998643222221 110000001123799999988852 2457999
Q ss_pred EECCCCceeeeeee--------------eeEEEEEeeE
Q 005342 663 YEAPTLNHTSQVLL--------------ISHIMFVQIV 686 (701)
Q Consensus 663 wd~~~g~~~~~l~~--------------i~~~~fs~~~ 686 (701)
||+.+++....... +.+++|||+.
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCC
Confidence 99988875332221 3567888874
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=1.9e-15 Score=160.03 Aligned_cols=241 Identities=11% Similarity=0.033 Sum_probs=160.3
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecCCCCCCCCEEEEEEecCCCE--EEEEE-----------
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDF--LVALT----------- 460 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~~~~~~~~v~~l~~spdg~~--l~s~s----------- 460 (701)
+..++|+|||++|++++.+ .|.+|++.. .++...+ ..+.. +.+.+++|+|||++ +++++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~---~g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKS---PTEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEE---TTEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECC---CCCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 5679999999999999887 999999852 2333222 11111 23456889999995 44442
Q ss_pred --CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeC
Q 005342 461 --QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL 532 (701)
Q Consensus 461 --~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~ 532 (701)
.+|.+.+|++.. ++.+... .+...+...+.+++|+ |+++++++ ++.|++||+
T Consensus 115 ~~~~g~v~v~~~~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 115 YKFAGYGNVFSVSE--------------------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp SSSCCEEEEEEECT--------------------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCceEEEEccCC--------------------CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 688899997632 1222110 0111245678899999 77887765 589999999
Q ss_pred C-CCcEE--EEec--CCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCC--CCceE------Eeec----CCCC------
Q 005342 533 E-TFQTL--ATFA--NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC--TKKTK------AKLK----GHQN------ 587 (701)
Q Consensus 533 ~-~~~~~--~~~~--~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~--~~~~~------~~l~----~h~~------ 587 (701)
. +++.. ..+. .+...+..++|+||| ++++++. ++.|.+|++. +++.. ..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67643 3343 235678999999999 7777664 6899998765 55542 2222 2232
Q ss_pred CeEEEE-EecCCCEEEEEeCC-C-----eEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcC---CCCEEEEE-
Q 005342 588 RITCLA-YSLSLNVLVSSGAD-A-----QLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSI- 655 (701)
Q Consensus 588 ~V~~v~-~spdg~~l~s~s~D-~-----~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp---dg~~l~sg- 655 (701)
.+..++ |+|||++|++++.+ + +|.+|++. +|+....... +. .+. ..+..++|+| ||++|+++
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~--~~-~~~---~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL--SP-TPT---SGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--EE-CSS---CCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--ee-cCC---CCcccceecCCCcCCCEEEEEE
Confidence 488999 99999988766542 2 89999996 5643211110 11 121 3456789999 89999986
Q ss_pred -ecCeEEEEECCCC
Q 005342 656 -HEGQIDVYEAPTL 668 (701)
Q Consensus 656 -~Dg~I~iwd~~~g 668 (701)
.+++|.+|++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 3589999999765
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=8.9e-15 Score=154.45 Aligned_cols=273 Identities=8% Similarity=0.029 Sum_probs=178.5
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------C
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------S 412 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~ 412 (701)
|++|.+||..+++....+ +. +..- .++|+|||+++++++ .
T Consensus 30 d~~v~v~D~~t~~~~~~i----------~~-------------------g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMV----------PT-------------------AFNG-HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp GCEEEEEETTTCCEEEEE----------EC-------------------CEEE-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred cCeEEEEECCCCeEEEEe----------cC-------------------CCCC-ceEECCCCCEEEEEEecccccccCCC
Confidence 789999999988766552 11 1113 689999999999886 3
Q ss_pred CCcEEEEeccccCCCCce-eEeecCCC--CCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeE
Q 005342 413 LEKSVNLKLQLINEPSEC-RTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~-~~l~~~~~--~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
++.|.+||.. +.+. ..+..... .+......++++|||++++++.. ++.|.+||.
T Consensus 80 ~~~v~v~d~~----t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~----------------- 138 (361)
T 2oiz_A 80 SDVVEVWDAD----KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDV----------------- 138 (361)
T ss_dssp EEEEEEEETT----TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEET-----------------
T ss_pred CCEEEEEECc----CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEEC-----------------
Confidence 5779999987 4333 23322111 02245677999999999998874 578999955
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEEe-CCeEEEEeCCC-CcEEEE------ecCCCCCeEEEEEcCC
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLAT------FANPPPIATYFILLPQ 556 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~-~~~~~~------~~~~~~~i~~l~~spd 556 (701)
.+++.+...+. .. ....+.+. +..+++.+ ||.+.+|++.. ++.... +.....+ ..+.++|+
T Consensus 139 ----~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (361)
T 2oiz_A 139 ----AKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALD 210 (361)
T ss_dssp ----TTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEEC
T ss_pred ----CCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEeccc
Confidence 55554432011 11 11122233 34566666 89999998865 554422 2222222 23445677
Q ss_pred C-eEEEEeCCCcEEEEeCCCCce--EEeecC------CC----CCeEEEEEecCCCEEEEEeC-----------CCeEEE
Q 005342 557 D-LFAFGFDDSSILVHCPCTKKT--KAKLKG------HQ----NRITCLAYSLSLNVLVSSGA-----------DAQLCV 612 (701)
Q Consensus 557 g-~l~~gs~dg~I~iwd~~~~~~--~~~l~~------h~----~~V~~v~~spdg~~l~s~s~-----------D~~I~v 612 (701)
+ .++..+.++.++++|+..... +..+.- +. .....++|+|+++.++.+.. .++|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 8 667777899999999875432 222210 11 11223789999887765532 358999
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCC--ceeeeeee----eeEEEEEee
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL--NHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g--~~~~~l~~----i~~~~fs~~ 685 (701)
||+.+++.+. . +..+ . +.+++|+|||++|+++.+++|.+||..++ +.++++.. ...++++|+
T Consensus 291 iD~~t~~~v~--~---i~~~-----~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 291 MDTKTKQRVA--R---IPGR-----D-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EETTTTEEEE--E---EECT-----T-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EECCCCcEEE--E---EecC-----C-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 9999975432 2 3222 5 78999999999999875599999999999 99999743 778888875
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=2e-14 Score=151.99 Aligned_cols=255 Identities=7% Similarity=0.017 Sum_probs=159.9
Q ss_pred EEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccce
Q 005342 407 AVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 407 l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~ 484 (701)
++.|+. ++.|.+|+++. .+++...+..........+..++|+|||+++++++.+ .+.+|++.
T Consensus 5 ~~vg~~~~~~~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~------------- 68 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVK------------- 68 (365)
T ss_dssp EEEEESSSSCEEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEE-------------
T ss_pred EEEEEccCCCcEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEEC-------------
Confidence 444443 25688877641 1444433321101123467889999999999988887 89999762
Q ss_pred eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE--EEEE--------------eCCeEEEEeCC-CCcEEEEec---
Q 005342 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA--- 542 (701)
Q Consensus 485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~--l~s~--------------sdg~I~iwd~~-~~~~~~~~~--- 542 (701)
. ++++....-...+ +.+.+++++ |++ ++++ .+|.+.+|++. +++....+.
T Consensus 69 ------~-~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~ 140 (365)
T 1jof_A 69 ------S-PTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE 140 (365)
T ss_dssp ------E-TTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE
T ss_pred ------C-CCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE
Confidence 1 3332211000011 224456777 663 4443 46899999997 465544333
Q ss_pred -CCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC-CCceE--Eeec--CCCCCeEEEEEecCCCEEEEEeC-CCeEEEE
Q 005342 543 -NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCVW 613 (701)
Q Consensus 543 -~~~~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~-~~~~~--~~l~--~h~~~V~~v~~spdg~~l~s~s~-D~~I~vw 613 (701)
.+...+.+++|+||| +++++. .++.|++||+. +++.. ..+. .|...+..++|+|||+++++++. +++|.+|
T Consensus 141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~ 220 (365)
T 1jof_A 141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY 220 (365)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence 245678999999999 777665 46799999998 67653 3333 23567899999999999887775 7899999
Q ss_pred ECC--CCeeee-eeeeeeccCCCCCCCC------CeEEEE-EcCCCCEEEEE--ecC-----eEEEEECC-CCceeee--
Q 005342 614 DAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQ-- 673 (701)
Q Consensus 614 d~~--~g~~~~-~~~l~~~~~~~~~~~~------~v~~v~-~spdg~~l~sg--~Dg-----~I~iwd~~-~g~~~~~-- 673 (701)
++. +|+... ...+..++.+...+.. .+..++ |+|||++|+++ .++ +|.+|++. +|+....
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~ 300 (365)
T 1jof_A 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeee
Confidence 875 554321 1223323322110002 588999 99999998874 333 89999996 6775432
Q ss_pred -ee--e--eeEEEEEee
Q 005342 674 -VL--L--ISHIMFVQI 685 (701)
Q Consensus 674 -l~--~--i~~~~fs~~ 685 (701)
.. + +.+++|+|.
T Consensus 301 ~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 301 LSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp EEECSSCCTTCCCEEEC
T ss_pred eeecCCCCcccceecCC
Confidence 22 1 677888883
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=1.1e-14 Score=155.27 Aligned_cols=302 Identities=13% Similarity=0.064 Sum_probs=185.4
Q ss_pred ccccCccceeEEEeecCcc-----eeeeEEEEccC----------CCCCeEEEEeccCCccccccccccCCCCCCCCCCc
Q 005342 311 FPSMDKSRLLSLIKQIMDW-----WVPYCINVMPN----------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPL 375 (701)
Q Consensus 311 iwd~~~~~~~~~l~~h~~~-----v~~~~l~fspd----------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (701)
..|..++..+..+..+... +. .++|||| ..+..|.+||+.+++.... ..+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~--~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l----------~~~--- 78 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFY--QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL----------TEG--- 78 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTT--SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC----------CCS---
T ss_pred eecCCCCcceEEEecCCCCccceeee--cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe----------ecC---
Confidence 4477788888777765443 56 7889998 2334788889888765443 111
Q ss_pred ccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCC
Q 005342 376 DASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 454 (701)
Q Consensus 376 ~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~ 454 (701)
+.. ...+.|+|||+.|+.++.++.+.+|++. +++...+.. .+.. |+|+|+
T Consensus 79 ----------------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~----~~~~~~~~~---~~~~------~~~~g~ 129 (396)
T 3c5m_A 79 ----------------KGDNTFGGFISTDERAFFYVKNELNLMKVDLE----TLEEQVIYT---VDEE------WKGYGT 129 (396)
T ss_dssp ----------------SCBCTTTCEECTTSSEEEEEETTTEEEEEETT----TCCEEEEEE---CCTT------EEEEEE
T ss_pred ----------------CCCccccceECCCCCEEEEEEcCCcEEEEECC----CCCcEEEEe---cccc------cCCCCC
Confidence 111 2236799999999999999999999997 555444331 1122 666666
Q ss_pred EEEEEECCCcEEEEecCCCCcccccc---------ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec---CCEEEEE
Q 005342 455 FLVALTQTATHKLWKWQSNKQSLEEE---------NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSA 522 (701)
Q Consensus 455 ~l~s~s~dg~i~vwd~~~~~~~~g~~---------~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s---~~~l~s~ 522 (701)
.|+..+.++...+|.....-.+.|.. .....+.+||..+++.... . .+...+..+.|+ ++.++..
T Consensus 130 ~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-~--~~~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 130 WVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-H--QDTAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-E--EESSCEEEEEEETTEEEEEEEE
T ss_pred EEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-c--cCCcccccceECCCCCCEEEEE
Confidence 66665555444444321111112211 1122456677777764432 1 345678888887 5556655
Q ss_pred e-C------CeEEEEeCCCCcEEEEecCC--CCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEeecCCCC
Q 005342 523 S-G------GKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQN 587 (701)
Q Consensus 523 s-d------g~I~iwd~~~~~~~~~~~~~--~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~l~~h~~ 587 (701)
+ + ..|.+||+.+++.. .+..+ ...+..++|+||| .|+.++.+ +.|++||+.+++...... ..+
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~ 284 (396)
T 3c5m_A 207 HEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP 284 (396)
T ss_dssp ECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS
T ss_pred ecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC
Confidence 4 2 46899998765433 33323 2357889999999 76666544 349999998886544322 112
Q ss_pred CeEEEEEec-CCCEEEEEe----------------CCCeEEEEECCCCeeeeeeeeeeccCCCCC-------CCCCeEEE
Q 005342 588 RITCLAYSL-SLNVLVSSG----------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-------ETTIVNHI 643 (701)
Q Consensus 588 ~V~~v~~sp-dg~~l~s~s----------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~-------~~~~v~~v 643 (701)
.. +.|+| ||+++++++ .++.|++||+.+++.. .+. .+... ....+..+
T Consensus 285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~---~~~~~~~~~~~~~~~~~~~~ 356 (396)
T 3c5m_A 285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLC---KHSTSWDVLDGDRQITHPHP 356 (396)
T ss_dssp -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EEE---ECCCCCCCBTTBSSTTCCCC
T ss_pred -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---Ecc---CCCCccccccccccCCCCCc
Confidence 33 89999 999888765 3478999999987532 222 11100 00125678
Q ss_pred EEcCCCCEEEEE--ecCe--EEEEECCCCc
Q 005342 644 QFHPDQIHLLSI--HEGQ--IDVYEAPTLN 669 (701)
Q Consensus 644 ~~spdg~~l~sg--~Dg~--I~iwd~~~g~ 669 (701)
+|+|||+.|+.. .++. |..+++.+++
T Consensus 357 ~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 357 SFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred eEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 899999988874 3444 5555655554
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=2.5e-14 Score=163.96 Aligned_cols=292 Identities=9% Similarity=-0.007 Sum_probs=180.0
Q ss_pred EeecCcceeeeEEEEccC---------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 323 IKQIMDWWVPYCINVMPN---------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 323 l~~h~~~v~~~~l~fspd---------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
+.+|...+. .++|+++ +.++...||....+...+. +..+...+. ....++.
T Consensus 19 ~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------l~~~~~~~~--------~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES----------ALPAPWNVR--------NRVFEYS 78 (662)
T ss_dssp HHHTCSCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE----------SSCTTCCBC--------CCGGGTC
T ss_pred HhhcCCccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce----------eCCCCcccc--------ccccccC
Confidence 345677777 7778877 4478899999654433333 222211000 0000111
Q ss_pred ceEEEEEc--CCCCe-EEEEcC-CCcEEEEeccccCCC-CceeEeec-CCCCCCCCEEEEEEecCCCEEEEEECC-----
Q 005342 394 QSRESTSL--PDADS-AVCAKS-LEKSVNLKLQLINEP-SECRTLLL-PDNSFGGRVVRLIYSHSGDFLVALTQT----- 462 (701)
Q Consensus 394 ~V~~l~~s--pdg~~-l~s~s~-d~~v~iw~~~~~~~~-~~~~~l~~-~~~~~~~~v~~l~~spdg~~l~s~s~d----- 462 (701)
. ....|+ |||+. |+.++. +..|.+|++.. .+ +....+.. +...+...+.+++|||||+.|++++.+
T Consensus 79 ~-~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 79 G-FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA--PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp C-CCEEEECCSSSSCEEEEEBTTTCCEEEECTTS--TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred C-ccceeeeecCCCeEEEEEECCCCeEEEEcCCC--CCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence 1 134454 99998 776654 45555555420 01 33333221 001145678899999999999988876
Q ss_pred -----CcEEEEecCCCCccccccccceeeEEeeCCC------CeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC---
Q 005342 463 -----ATHKLWKWQSNKQSLEEENVNMESQLYQPSS------KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG--- 525 (701)
Q Consensus 463 -----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg--- 525 (701)
..|.+||+ .+ +.... +...+...+..++|| |++|+.++ ++
T Consensus 156 ~~~~~~~i~~~~~---------------------~~~~~~~~~~~~~--l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 156 PSDVRRFLAAVPL---------------------DGSAAADRSAVRE--LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp TTCEEEEEEEEET---------------------TSTTTTCGGGSEE--SSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred CCCceeEEEEEEC---------------------CCCccccCCceeE--EEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence 45666654 44 33322 210234567778899 88888776 53
Q ss_pred -----eEEEEeCC-CC---cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEeecCCCCC-----
Q 005342 526 -----KISIFSLE-TF---QTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNR----- 588 (701)
Q Consensus 526 -----~I~iwd~~-~~---~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg--~I~iwd~~~~~~~~~l~~h~~~----- 588 (701)
.|++||+. ++ +......++...+..++|+||| +++++..++ .|++||..+++......++...
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 79999998 56 4444444456789999999999 888888888 7888887777765544443322
Q ss_pred ---eEEEEEecCCCEEEEEeCCCeEEEE--ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE--EEe-c--C
Q 005342 589 ---ITCLAYSLSLNVLVSSGADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL--SIH-E--G 658 (701)
Q Consensus 589 ---V~~v~~spdg~~l~s~s~D~~I~vw--d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~--sg~-D--g 658 (701)
+..++|+|+++++++++. +.+++| |..+++. .. +. .+. ..+..+ |++++..++ ++. + .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~---~~---l~-~~~---~~~~~~-~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL---VD---AA-GPW---TEWAAT-LTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE---EE---CC-SSC---CEEEEE-EEEETTEEEEEEEETTEEE
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE---EE---ec-CCC---CeEEEE-EecCCCEEEEEEcCCCCCC
Confidence 567899999999999998 999999 6666541 22 22 332 556665 255555443 333 3 2
Q ss_pred eEEEEECCCCceee
Q 005342 659 QIDVYEAPTLNHTS 672 (701)
Q Consensus 659 ~I~iwd~~~g~~~~ 672 (701)
.|.+||+.+++...
T Consensus 361 ~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 361 EVVELDTVTGRART 374 (662)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCceEE
Confidence 57777877776543
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=2.2e-14 Score=164.33 Aligned_cols=259 Identities=8% Similarity=-0.029 Sum_probs=173.6
Q ss_pred ccCCCc-eEEEEEcCCCCeEEEE--cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEE---------EEEEe--cCCC
Q 005342 389 FNDNNQ-SRESTSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGD 454 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~~l~s~--s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~---------~l~~s--pdg~ 454 (701)
+.+|.. +..++|++++-+++++ +.++...||.... .+....+. .+...+. ...|+ |||+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESAL----PAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT---TSCEEESS----CTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECC---CCCcceeC----CCCccccccccccCCccceeeeecCCC
Confidence 567888 9999999987777877 6688899999632 34434432 2333444 55565 9999
Q ss_pred E-EEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCC--C-CeEEeecccCC----CCCCeEEEEec--CCEEEEEe
Q 005342 455 F-LVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPS--S-KLVMTNDIAAD----PKDSISCFALR--GSHLFSAS 523 (701)
Q Consensus 455 ~-l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~--~-~~~~~~~~~~~----~~~~v~~l~~s--~~~l~s~s 523 (701)
. |+.++. +..|.+++ .. + +.... +... |...+.+++|+ |+.|++++
T Consensus 92 ~~la~~~~~~~~l~~~~---------------------~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~ 148 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFE---------------------PDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMA 148 (662)
T ss_dssp CEEEEEBTTTCCEEEEC---------------------TTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCeEEEEc---------------------CCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEE
Confidence 8 776554 34454443 33 2 33221 2111 55678899999 88888887
Q ss_pred -C----------CeEEEEeCCC------CcEEEEec-CCCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCC-C
Q 005342 524 -G----------GKISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-T 575 (701)
Q Consensus 524 -d----------g~I~iwd~~~------~~~~~~~~-~~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~-~ 575 (701)
+ ..|++||+.+ ++. ..+. .+...+..++||||| .|+.++.+ ..|++||+. +
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 6 5899999987 544 4454 555678889999999 88877754 379999998 5
Q ss_pred C---ceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCC-----CCeEEEEE
Q 005342 576 K---KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPET-----TIVNHIQF 645 (701)
Q Consensus 576 ~---~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~-----~~v~~v~~ 645 (701)
+ +......+|...+..++|+|||+++++++.++ .|++||+.+++... +..++.... ..+.+++|
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCSSBSSCCCCSTTCCSEEE
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee------cccccccccCccccccCceEeE
Confidence 6 44444455678899999999999888888888 67777776764221 222221000 11567899
Q ss_pred cCCCCEEEEEecCeEEEE--ECCCCceeeeeee----eeEE-EEEee
Q 005342 646 HPDQIHLLSIHEGQIDVY--EAPTLNHTSQVLL----ISHI-MFVQI 685 (701)
Q Consensus 646 spdg~~l~sg~Dg~I~iw--d~~~g~~~~~l~~----i~~~-~fs~~ 685 (701)
+|++++++++.++.++|| |..+++ ++.+.. +..+ ++++.
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~ 347 (662)
T 3azo_A 302 LANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGT 347 (662)
T ss_dssp CTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETT
T ss_pred eCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCC
Confidence 999999988733888888 655555 555554 5555 44433
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=8.7e-14 Score=144.89 Aligned_cols=240 Identities=10% Similarity=0.049 Sum_probs=171.0
Q ss_pred eEEEEEcCCCCeEEEEcCC------------------------CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSL------------------------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 450 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d------------------------~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s 450 (701)
+.+++++|+|+++++...+ +.|.+||.. ++++.... ...+......++++
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~--~~~~~~~p~gia~d 99 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN----NAEILQSS--GKNLFYLPHGLSID 99 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT----TCCEEEEE--CTTTCSSEEEEEEC
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC----CCeEEecc--CCCccCCceEEEEC
Confidence 8899999999999998877 479999986 56554311 12344678999999
Q ss_pred cCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee--c----ccCCCCCCeEEEEec---CCEEEE
Q 005342 451 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--D----IAADPKDSISCFALR---GSHLFS 521 (701)
Q Consensus 451 pdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~----~~~~~~~~v~~l~~s---~~~l~s 521 (701)
|+|+.+++.+.++.|.+|+...... .+... . ....+...+..++++ |.++++
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~-------------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEG-------------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSC-------------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeE-------------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence 9999777777789999997633210 01100 0 001334467889998 566666
Q ss_pred Ee--CCeEEEEeCCCCcEEEEecCCC----------CCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeec--CC
Q 005342 522 AS--GGKISIFSLETFQTLATFANPP----------PIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLK--GH 585 (701)
Q Consensus 522 ~s--dg~I~iwd~~~~~~~~~~~~~~----------~~i~~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~--~h 585 (701)
.+ ++.|++|| .++..+..+.... .....++++|+ + ++++...++.|++||..+++.+..+. ++
T Consensus 161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence 63 68999999 5777777764222 23789999999 6 77888889999999998899888874 35
Q ss_pred CCCeEEEEEecCCCEEEE-------EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342 586 QNRITCLAYSLSLNVLVS-------SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (701)
Q Consensus 586 ~~~V~~v~~spdg~~l~s-------~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D 657 (701)
...+.+++|+| +..+++ .+.+.+|++||..+|+... .+. ...++. ..+.+++++|+|.++++. .+
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~--~~~-~~~~~~---~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID--VFK-PVRKHF---DMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEE--EEC-CSSSCC---SSEEEEEECTTSEEEEEESSS
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE--EEc-CCCCcc---CCeeEEEECCCCCEEEEECCC
Confidence 56789999999 433333 3345699999999986432 221 112333 678999999999666665 68
Q ss_pred CeEEEEECCC
Q 005342 658 GQIDVYEAPT 667 (701)
Q Consensus 658 g~I~iwd~~~ 667 (701)
+.|++|++..
T Consensus 313 ~~I~~~~~~~ 322 (329)
T 3fvz_A 313 NTVWKFTLTE 322 (329)
T ss_dssp CCEEEEEEEE
T ss_pred CEEEEEeCCc
Confidence 8999999853
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=3.3e-15 Score=159.24 Aligned_cols=247 Identities=7% Similarity=-0.045 Sum_probs=152.0
Q ss_pred eEEEEEcCCCCeEEEEcCC---CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
+..++|+|||++|+.+... ..+.+|++. +++...+.. .+......+.|+|||++|+.++.++.+.+||+.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~----~~~~~~l~~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE----TQQAVQLTE---GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETT----TTEEEECCC---SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECC----CCcEEEeec---CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 5568899999998877543 467888886 565544321 122222237899999999999999999999775
Q ss_pred CCCccc-cccccceeeEEeeCCCCeEEeecccCCCCCCeEE-----EEec--CCEEEEE-----e-CCeEEEEeCCCCcE
Q 005342 472 SNKQSL-EEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-----FALR--GSHLFSA-----S-GGKISIFSLETFQT 537 (701)
Q Consensus 472 ~~~~~~-g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-----l~~s--~~~l~s~-----s-dg~I~iwd~~~~~~ 537 (701)
++.... ...... |.+. +..+. +. ....... ..++ ++.++.+ . +..|++||+.+++.
T Consensus 111 ~~~~~~~~~~~~~-----~~~~-g~~l~--~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 111 TLEEQVIYTVDEE-----WKGY-GTWVA--NS--DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp TCCEEEEEECCTT-----EEEE-EEEEE--CT--TSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred CCCcEEEEecccc-----cCCC-CCEEE--ec--cCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 432100 000000 0000 00000 00 0000000 1233 4443332 3 56899999988876
Q ss_pred EEEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEEEEEeCC-
Q 005342 538 LATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD- 607 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~sp-dg-~l~~gs~d------g~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D- 607 (701)
..... +...+..+.|+| ++ .++..+.+ ..|++||+.+++........ ...+..++|+|||++|+.++.+
T Consensus 181 ~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 181 EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 55543 566789999999 77 66666543 36999998766544333321 2357889999999988776554
Q ss_pred ----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcC-CCCEEEEEe-----------------cCeEEEEEC
Q 005342 608 ----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH-----------------EGQIDVYEA 665 (701)
Q Consensus 608 ----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~sg~-----------------Dg~I~iwd~ 665 (701)
+.|++||+.+++... +... .... +.|+| ||++++++. ++.|++||+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~---l~~~--------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEE---VMVM--------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp TTCCEEEEEECTTTCCEEE---EEEC--------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCccceEEEEECCCCCeEE---eeeC--------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 459999999875322 2211 1123 89999 999888632 367999999
Q ss_pred CCCcee
Q 005342 666 PTLNHT 671 (701)
Q Consensus 666 ~~g~~~ 671 (701)
.+++..
T Consensus 328 ~~~~~~ 333 (396)
T 3c5m_A 328 KAKSAQ 333 (396)
T ss_dssp TTTBCC
T ss_pred ccCceE
Confidence 888753
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=1.3e-13 Score=145.58 Aligned_cols=278 Identities=11% Similarity=0.078 Sum_probs=180.8
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC------C-----------CCCeEEEEeccCCccccccccccCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------A-----------NNETISLKDFPTVSNLRYASSILTDKPN 369 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s-----------~d~~i~lWd~~~~~~~~~~~~~~~~~~~ 369 (701)
+.|.+||..+++.+..+..+.. +.++|+|| + .+++|.+||..+++....+
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~----p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i--------- 97 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFN----GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI--------- 97 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEE----EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE---------
T ss_pred CeEEEEECCCCeEEEEecCCCC----CceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE---------
Confidence 6788999999999988876533 27899999 1 2678999999988776662
Q ss_pred CCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEee-cCCCCCCCCEE
Q 005342 370 QEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVV 445 (701)
Q Consensus 370 ~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~ 445 (701)
..... .. .+.. ...++++|||++|+++.. +++|.+||+. +++... . ++ .....
T Consensus 98 -~~~~~------------~~-~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~----~~~~~~-~~i~----~~~~~ 154 (361)
T 2oiz_A 98 -SLPPK------------RV-QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA----KGDYVE-DVTA----AAGCW 154 (361)
T ss_dssp -EECTT------------BC-CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT----TTEEEE-EEGG----GTTEE
T ss_pred -EcCcc------------cc-ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC----CCcEEE-EEec----CCCcc
Confidence 11000 00 0112 456899999999998864 5899999998 554433 1 21 12234
Q ss_pred EEEEecCC-CEEEEEECCCcEEEEecCCCCccccccccce-eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEE
Q 005342 446 RLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNM-ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (701)
Q Consensus 446 ~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s 521 (701)
.+.+.|++ ..+++.+.||.+.+|+..... +..... ...+|++ ...++ .+..+ +..++.
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g----~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~g~~~~~ 216 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGEDG----KVASQSRSKQMFSV-------------KDDPI-FIAPALDKDKAHF 216 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTTS----SEEEEEECCCCSCT-------------TTSCB-CSCCEECSSEEEE
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCCC----cEeeeccccceEcC-------------CCCce-EEEecccCCEEEE
Confidence 45677876 577888899999999763311 100000 0001111 11121 11112 555566
Q ss_pred Ee-CCeEEEEeCCCCc--EEEEecCC----------CCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCC
Q 005342 522 AS-GGKISIFSLETFQ--TLATFANP----------PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTK 576 (701)
Q Consensus 522 ~s-dg~I~iwd~~~~~--~~~~~~~~----------~~~i~~l~~spdg-~l~~gs~-----------dg~I~iwd~~~~ 576 (701)
.+ ++.+.++|+.... ....+... ......++++|++ .++++.. ++.|.+||+.++
T Consensus 217 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~ 296 (361)
T 2oiz_A 217 VSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK 296 (361)
T ss_dssp EBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT
T ss_pred EeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC
Confidence 66 8899999986543 22222110 1112237899998 5554432 348999999999
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC--eeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g--~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
+.+.++..+. +.+++|+|||++|++++. ++|.+||..++ +.+ ..+. ..| .....++++|+|+
T Consensus 297 ~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~--~~i~--~~G-----~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 297 QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL--RTIE--GAA-----EASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE--EEET--TSC-----SSEEEEEECCCSC
T ss_pred cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee--EEec--cCC-----CCcEEEEecCCCC
Confidence 9999999876 899999999999998887 99999999998 432 2221 112 5568899999986
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=6.1e-13 Score=138.40 Aligned_cols=275 Identities=8% Similarity=-0.053 Sum_probs=185.5
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEE
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNL 419 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw 419 (701)
+.+++|.+||..+++....+ +.... . ..... ...+++. +++..++...++.|.+|
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i---------~~~~n-----------~---~~lg~~~~~i~~~-~~~lyv~~~~~~~v~vi 69 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEV---------FYRAN-----------G---FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAI 69 (328)
T ss_dssp SCCBEEEEEETTTTEEECSH---------HHHHH-----------S---SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEE
T ss_pred CCCceEEEEECCCCEEhhhh---------Hhhhc-----------C---cccCccceEEEEE-CCEEEEEEcCCCEEEEE
Confidence 34899999999998865542 10000 0 01112 4567774 45666667778999999
Q ss_pred eccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEE
Q 005342 420 KLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 497 (701)
Q Consensus 420 ~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~ 497 (701)
|.. +++... +. .......++++++|+ +.++. .++.|.+||. .++++.
T Consensus 70 D~~----t~~~~~~i~-----~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~---------------------~t~~~~ 118 (328)
T 3dsm_A 70 DIN----TFKEVGRIT-----GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINP---------------------KTYEIT 118 (328)
T ss_dssp ETT----TCCEEEEEE-----CCSSEEEEEEEETTE-EEEEEBSCSEEEEEET---------------------TTTEEE
T ss_pred ECc----ccEEEEEcC-----CCCCCcEEEEeCCCe-EEEEECCCCeEEEEEC---------------------CCCeEE
Confidence 998 555432 22 246788999999995 55555 7899999955 555543
Q ss_pred eecccCCC----CCCeEEEEec-CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC----
Q 005342 498 TNDIAADP----KDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---- 565 (701)
Q Consensus 498 ~~~~~~~~----~~~v~~l~~s-~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d---- 565 (701)
.. +..+. ......+++. +..+++.. ++.|.++|..+++.+.++... .....++++|+| +++++..+
T Consensus 119 ~~-i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 119 GY-IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp EE-EECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred EE-EEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCC
Confidence 22 11111 1144466668 44444432 689999999999988887643 345789999999 66665554
Q ss_pred ------CcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCC
Q 005342 566 ------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 638 (701)
Q Consensus 566 ------g~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~ 638 (701)
+.|+++|..+++....+... ......++|+|++++++.+.. .|.+||..+++...... +. ... .
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~---~~-~~~---~ 267 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF---LE-FRD---T 267 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS---BC-CCS---S
T ss_pred ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee---ec-CCC---C
Confidence 78999999999888776532 236899999999998887655 89999999875321111 11 111 5
Q ss_pred CeEEEEEcCC-CCEEEEE-----ecCeEEEEECCCCceeeeeee---eeEEEE
Q 005342 639 IVNHIQFHPD-QIHLLSI-----HEGQIDVYEAPTLNHTSQVLL---ISHIMF 682 (701)
Q Consensus 639 ~v~~v~~spd-g~~l~sg-----~Dg~I~iwd~~~g~~~~~l~~---i~~~~f 682 (701)
...+++++|+ +.+.++. .++.|.+||.. |+.+++++. -.+++|
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 6789999995 5544444 37889999997 999998876 566666
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=1.6e-12 Score=144.46 Aligned_cols=307 Identities=12% Similarity=0.070 Sum_probs=209.7
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-------CCCCeEEEEecc--CCccccccccccCCCCCCCCCCccc
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-------ANNETISLKDFP--TVSNLRYASSILTDKPNQEGRPLDA 377 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-------s~d~~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (701)
+.|.++|..+++.+..+... ..+. .+.|||| +.|+.|.+||+. +++.+..+ .
T Consensus 177 ~~V~viD~~t~~v~~~i~~g-~~p~--~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------~------ 237 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTG-YAVH--ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------K------ 237 (567)
T ss_dssp TEEEEEETTTCCEEEEEECS-SCEE--EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE----------E------
T ss_pred CeEEEEECCCCeEEEEEeCC-CCcc--ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE----------e------
Confidence 78999999999999988753 3467 8999999 678999999995 66555442 1
Q ss_pred ccCCCCCCCccccCCCceEEEEEc----CCCCeEEEEcC-CCcEEEEeccccCCCCceeE-eecC---CCC---C-CCCE
Q 005342 378 SSGDDSNDSSCFNDNNQSRESTSL----PDADSAVCAKS-LEKSVNLKLQLINEPSECRT-LLLP---DNS---F-GGRV 444 (701)
Q Consensus 378 s~~D~~~~~~~l~~h~~V~~l~~s----pdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~-l~~~---~~~---~-~~~v 444 (701)
.......++|+ |||+++++++. ++++.++|.. +.+... +... ... | ...+
T Consensus 238 -------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~----t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 238 -------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp -------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TCCEEEEEECCEECTTTCCEESCCCE
T ss_pred -------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC----CCcEEEEEeccccccccccccCCCce
Confidence 11125679999 79998887764 4899999987 443332 2211 110 1 2378
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEE
Q 005342 445 VRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 521 (701)
Q Consensus 445 ~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s 521 (701)
..+..++++..++..- .+|.|.++|..... ...+. .+ .......++.|+ |+++++
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-------------------~~~v~-~i--~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLN-------------------NLKTT-EI--SAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSS-------------------EEEEE-EE--ECCSSEEEEEECTTSCEEEE
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCc-------------------cceee-ee--eccccccCceECCCCCEEEE
Confidence 8899999877555444 46899888763210 01111 12 123456688898 888777
Q ss_pred Ee--CCeEEEEeCCCCcEEEEecC-----CCCCeEEEEEcCCC--eEEEEe-CCCcEEEEeCCC-------CceEEeecC
Q 005342 522 AS--GGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD--LFAFGF-DDSSILVHCPCT-------KKTKAKLKG 584 (701)
Q Consensus 522 ~s--dg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~spdg--~l~~gs-~dg~I~iwd~~~-------~~~~~~l~~ 584 (701)
+. ++.|.++|+.+++.+..+.. |...-.. .++|++ ..+++. .+++|.++|..+ .+.++++.+
T Consensus 359 a~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 359 AANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec
Confidence 66 69999999999988777654 2211112 268886 444543 468999999987 567888876
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCe----eeeeeeee-----eccCCCCCCCCCeEEEEEcCC
Q 005342 585 HQNRITCLAYSLSLNVLVSSGA-------DAQLCVWDAVGWK----KLCSKFLH-----SFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l~s~s~-------D~~I~vwd~~~g~----~~~~~~l~-----~~~~~~~~~~~~v~~v~~spd 648 (701)
....-..+..+|+++++..... .++|.|+|+.+.+ ......+. .+..+. ..+..+.|+|+
T Consensus 438 ~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 513 (567)
T 1qks_A 438 LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ----PRVVQGEFNKD 513 (567)
T ss_dssp SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC----CEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC----cceEeeeECCC
Confidence 5433345778999998887663 3599999998751 11112222 011111 57899999999
Q ss_pred CCEEEEE-e-----cCeEEEEECCCCceeeeeee
Q 005342 649 QIHLLSI-H-----EGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 649 g~~l~sg-~-----Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|+.+.++ . ++.|.|+|..+++++++++.
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9998875 3 68999999999999999885
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=2.7e-13 Score=141.80 Aligned_cols=231 Identities=12% Similarity=0.090 Sum_probs=156.2
Q ss_pred eEEEEEcCCCCeEEEEc---------CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC---
Q 005342 395 SRESTSLPDADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT--- 462 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s---------~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d--- 462 (701)
+..+++ ||+.++... .++.|.+|++. +++...+ ..+..+.|||||++|+.++.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK----NNARRFI--------ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT----TCCEEEE--------ESCEEEEECTTSSEEEEEEEETTT
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCC----CCceEEc--------ccCCCeEECCCCCEEEEEEeccCC
Confidence 778888 999888652 25678899987 5554443 457889999999999988764
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---------------
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--------------- 524 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d--------------- 524 (701)
+...+| +|+..+++.... .. +.. +.+++|+ |+.|+.++ +
T Consensus 83 ~~~~l~-------------------~~~~~~g~~~~l--~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 83 KVSEIW-------------------VADLETLSSKKI--LE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp TEEEEE-------------------EEETTTTEEEEE--EE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred CcceEE-------------------EEECCCCceEEE--Ec-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 454444 235566654321 11 223 8899998 77787775 3
Q ss_pred ------------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCceEEeec
Q 005342 525 ------------GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLK 583 (701)
Q Consensus 525 ------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~d---------g~I~iwd~~~~~~~~~l~ 583 (701)
..|++||+.+++.+..+.. . .+..++|+|||+++++..+ ..|+++| +++. ..+.
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~ 214 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMF 214 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEec
Confidence 5799999988877455554 3 7889999999933333333 2455666 5544 3344
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEE-EEEcCCCCEEEE
Q 005342 584 GHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS 654 (701)
Q Consensus 584 ~h~~~V~~v~~spdg~~l~s~s~D--------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~-v~~spdg~~l~s 654 (701)
.+ ..+..+ +|||++|+.++.+ ..|++|| +++. . . +..++. ..+.. +.|+ || ++++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~---~--~-l~~~~~---~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV---M--G-ILDEVD---RGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE---E--E-SSTTCC---SEEEEEEEET-TE-EEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce---E--e-ccccCC---cccCCccEEc-Cc-EEEE
Confidence 44 555544 9999988877754 4788888 5431 1 1 333443 66776 9999 88 7666
Q ss_pred E-ecCeEEEEECCCCceeeeeee---eeEEEEEe
Q 005342 655 I-HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQ 684 (701)
Q Consensus 655 g-~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~ 684 (701)
+ .++.++|| +.+|+....+.+ |.+++|+|
T Consensus 279 ~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred EecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 5 78999999 877776555544 88888888
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=6.3e-13 Score=135.93 Aligned_cols=237 Identities=11% Similarity=0.021 Sum_probs=164.4
Q ss_pred ccCCCc-eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 005342 389 FNDNNQ-SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 466 (701)
Q Consensus 389 l~~h~~-V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~ 466 (701)
+..+.. ..+++|+|+|+ .++++..++.|..|+.. ++ ...+.. +...+.+++++|+|+.+++...++.|.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~----~~-~~~~~~----~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD----GQ-LSPEMH----PSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT----SC-EEEEES----SCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC----CC-eEEEEC----CCCCcceeeECCCCcEEEEecCCCeEE
Confidence 444455 88999999998 78888889999999987 44 333332 456799999999999776666678899
Q ss_pred EEecCCCCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEE----Ee--------------C
Q 005342 467 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFS----AS--------------G 524 (701)
Q Consensus 467 vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s----~s--------------d 524 (701)
+||. .++++... .........+.+++++ |+++++ ++ .
T Consensus 94 ~~d~---------------------~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 94 RQRE---------------------PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp EECS---------------------TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred EEcC---------------------CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 9855 33332211 0001112346678888 776665 32 2
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCce---EEeecCCCCCeEEEEEecCCC
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKT---KAKLKGHQNRITCLAYSLSLN 599 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~---~~~l~~h~~~V~~v~~spdg~ 599 (701)
+.|..+|.. ++. ..+..+......++|+|+| .+++.+.++.|++||+. +++. ...+..+.+.+..++++++|+
T Consensus 153 ~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 153 RWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp CEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred cEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 467777765 443 3444456677899999999 66888888999999987 5554 334433556678899999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE-cCCCCEEEEEecCeEEEEECCCCce
Q 005342 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~-spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
+.++. ++.|.+||.. |+.. ..+. .+. . +++++| +|+++.|+++..+.+.-++..++++
T Consensus 231 l~v~~--~~~v~~~~~~-g~~~--~~~~----~~~---~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPD-GDEL--GRVL----TPQ---T-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp EEEEE--TTEEEEECTT-SCEE--EEEE----CSS---C-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred EEEEc--CCeEEEECCC-CCEE--EEEE----CCC---C-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 77666 7899999987 4322 2222 221 4 789999 5899989887667777778776654
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=1.4e-12 Score=135.64 Aligned_cols=224 Identities=10% Similarity=0.022 Sum_probs=150.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC----CcEEEEec
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~ 470 (701)
+.+++|+|+|++++++..++.|.+||.. +++...+.. .+...+.+++++|+|+.+++...+ +.|.+||.
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~----~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPE----TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCC----CCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 7789999999988889999999999987 555544331 245679999999999977776655 57888854
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC-------CeEEEEeCCCCcEEEEe
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG-------GKISIFSLETFQTLATF 541 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd-------g~I~iwd~~~~~~~~~~ 541 (701)
.++..........+...+.+++++ |+++++... +.|..+|..+++.....
T Consensus 120 ---------------------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 120 ---------------------NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---------------------TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred ---------------------CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 333322100001234578899998 666555442 56777777655543322
Q ss_pred cCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCC-CceEE--------eecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 005342 542 ANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT-KKTKA--------KLKGHQNRITCLAYSLSLNVLVSSGADAQL 610 (701)
Q Consensus 542 ~~~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~-~~~~~--------~l~~h~~~V~~v~~spdg~~l~s~s~D~~I 610 (701)
. ....+..++++|+| .++ +.+.++.|++||+.+ +.... .+.++ ..+..++++++|++.++...++.|
T Consensus 179 ~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 179 Q-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp E-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred c-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 2 33457899999999 554 445678999999864 33222 12223 467889999999988888888999
Q ss_pred EEEECCCCeeeeeeeeeeccC---CCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 611 CVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 611 ~vwd~~~g~~~~~~~l~~~~~---~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
.+||.. ++.. ..+. ... ++. ..+.+++|+||++.|+++
T Consensus 257 ~~~d~~-g~~~--~~~~-~~~~~~g~~---~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 257 LVFNKR-GYPI--GQIL-IPGRDEGHM---LRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEECTT-SCEE--EEEE-CTTGGGTCS---CBCCEEEECTTSCEEEEE
T ss_pred EEECCC-CCEE--EEEE-cCCCccccc---cCcceEEECCCCCEEEEE
Confidence 999985 4322 2222 111 111 268899999998777653
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=3e-13 Score=141.54 Aligned_cols=239 Identities=7% Similarity=-0.023 Sum_probs=146.0
Q ss_pred eEEEEEcCCCCeEEEEcCC---Cc--EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----cE
Q 005342 395 SRESTSLPDADSAVCAKSL---EK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----TH 465 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~--v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i 465 (701)
+..++|||||+.|+.++.+ +. |.+|++. +++...+.. +.. +.+++|+|||+.|+.++.+. ..
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~----~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLE----TLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDF 131 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETT----TTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC----
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECC----CCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCc
Confidence 5679999999999987754 33 6777776 565555442 223 89999999999998887431 00
Q ss_pred EEEecCCCCcccccc---ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CC-------eEEEEeCC
Q 005342 466 KLWKWQSNKQSLEEE---NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG-------KISIFSLE 533 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg-------~I~iwd~~ 533 (701)
.+.+- ..-...|.. .....+.+|+..+++.... +.. . .+..++|+ +.+++++. ++ ...+|.+.
T Consensus 132 ~~~~~-~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~-l~~--~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 132 IFEDD-VPAWFDDLGFFDGEKTTFWIFDTESEEVIEE-FEK--P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEE-EEE--E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE
T ss_pred EEEcc-cceeecCcccccCccceEEEEECCCCeEEee-ecC--C-CcccccCCCCeEEEEEecccccccccccccEEEeC
Confidence 00000 000000000 0012345667777776222 222 2 67888999 33666665 32 33444433
Q ss_pred CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEeecCCCCCeEE-EEEecCCCEEEE
Q 005342 534 TFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNRITC-LAYSLSLNVLVS 603 (701)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d--------g~I~iwd~~~~~~~~~l~~h~~~V~~-v~~spdg~~l~s 603 (701)
+++. ..+..+ ..+..+ +||| .|+.++.+ ..|++|| +++......+|...+.. +.|+ |+ ++++
T Consensus 207 ~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 207 DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE
Confidence 5543 333333 444444 9999 77776644 4788898 66666555667778886 8999 88 8899
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeE-EEEECCCCc
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI-DVYEAPTLN 669 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I-~iwd~~~g~ 669 (701)
++.++.+++| +.+|+. .. +..+ . ..|.+++|+| .++++ +.++.. .||.+. |+
T Consensus 279 ~~~~~~~~l~-~~~g~~---~~---~~~~-~---~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI---KP---IAKG-R---HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEETTEEEEE-EESSSE---EE---EECS-S---SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EecCCcEEEE-EcCCce---EE---EecC-C---CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 9999999999 876542 11 2223 2 7899999999 56665 455543 677765 54
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=3.3e-12 Score=129.76 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=160.8
Q ss_pred cCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eEE
Q 005342 326 IMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SRE 397 (701)
Q Consensus 326 h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~~ 397 (701)
+...+. +++++|+ ..++.|.+||.. +.....+ .... .-.+|.. +..
T Consensus 28 ~~~~p~--~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~----------~~~~-------------~~~~~~~~p~~ 81 (286)
T 1q7f_A 28 QFTEPS--GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF----------GECG-------------KRDSQLLYPNR 81 (286)
T ss_dssp CBSCEE--EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE----------CCBS-------------SSTTCBSSEEE
T ss_pred ccCCCc--eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe----------cccC-------------CCcccccCceE
Confidence 334566 8888887 467889999976 4444431 1100 0013444 788
Q ss_pred EEE-cCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc
Q 005342 398 STS-LPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 475 (701)
Q Consensus 398 l~~-spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 475 (701)
+++ .++++++++... ++.|.+|+.. ......+.. .+...+.+++++|+|+.+++...++.|.+||.
T Consensus 82 i~~~~~~g~l~v~~~~~~~~i~~~d~~----g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----- 149 (286)
T 1q7f_A 82 VAVVRNSGDIIVTERSPTHQIQIYNQY----GQFVRKFGA---TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ----- 149 (286)
T ss_dssp EEEETTTTEEEEEECGGGCEEEEECTT----SCEEEEECT---TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-----
T ss_pred EEEEcCCCeEEEEcCCCCCEEEEECCC----CcEEEEecC---ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-----
Confidence 999 578887777753 7899999953 222222211 23457899999999997777667889999954
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCC--CCCeEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATY 550 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~ 550 (701)
. +......-...+...+.+++++ |+++++.. ++.|++||. +++.+..+..+ ...+..
T Consensus 150 ----------------~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~ 211 (286)
T 1q7f_A 150 ----------------N-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG 211 (286)
T ss_dssp ----------------T-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE
T ss_pred ----------------C-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcE
Confidence 2 2221110101334568899999 66555555 799999997 56666666543 356899
Q ss_pred EEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEeecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 551 FILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg-~I~iwd~~~~~~~~~l~~h~~--~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
++++|+| ++++...++ .|.+||. +++.+..+..+.. .+.+++++|+|+++++ +.|++|++|+....
T Consensus 212 i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 212 VGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 9999999 777777775 9999995 5667776665433 4789999999987777 67999999998663
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=9.4e-13 Score=152.10 Aligned_cols=242 Identities=11% Similarity=0.020 Sum_probs=164.6
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCCC-----cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSLE-----KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d~-----~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
+|.. +..++|||||++||.+..++ .|++||+. +++...... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----tg~~~~~~~----~~~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----GAKELPDVL----ERVKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----TTEEEEEEE----EEECSCCEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----CCCCCcccc----cCcccceEEEEeCCCEEEEEEECCc
Confidence 4555 88999999999999776543 89999998 666554332 1123567999999999999988765
Q ss_pred ----------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---
Q 005342 465 ----------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--- 523 (701)
Q Consensus 465 ----------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--- 523 (701)
|++|++.++. ....++.. . ..+...+..++|+ |++|+.++
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~-----------------~~~~~v~~-~-~~~~~~~~~~~~SpDg~~l~~~~~~~ 254 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQ-----------------SEDILCAE-F-PDEPKWMGGAELSDDGRYVLLSIREG 254 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCG-----------------GGCEEEEC-C-TTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred cccccccccccCCCCEEEEEECCCCc-----------------ccceEEec-c-CCCCeEEEEEEEcCCCCEEEEEEEcc
Confidence 6666553221 00012211 1 2345567889999 88877664
Q ss_pred ---CCeEEEEeCCC------Cc-EEEEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCc--eEEeecCCC
Q 005342 524 ---GGKISIFSLET------FQ-TLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKK--TKAKLKGHQ 586 (701)
Q Consensus 524 ---dg~I~iwd~~~------~~-~~~~~~~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~--~~~~l~~h~ 586 (701)
+..|++||+.+ +. ....+..+...+.. .|+|+| .++..+.. +.|++||+.++. ....+..|.
T Consensus 255 ~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred CCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 35899999976 43 35556656555554 588888 55555443 369999998764 234444454
Q ss_pred C--CeEEEEEecCCCEEEEEeCCCe--EEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-----ec
Q 005342 587 N--RITCLAYSLSLNVLVSSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HE 657 (701)
Q Consensus 587 ~--~V~~v~~spdg~~l~s~s~D~~--I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-----~D 657 (701)
. .+..++|++++.++++...|+. |++||+.+|+.. ..+. .+. +.+..++++|+++.++.+ ..
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~--~~l~----~~~---~~v~~~~~s~d~~~l~~~~ss~~~P 404 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL--KIFP----LEV---GSVVGYSGQKKDTEIFYQFTSFLSP 404 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE--EEEC----CCS---SEEEEEECCTTCSEEEEEEECSSCC
T ss_pred CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE--EecC----CCC---ceEEEEecCCCCCEEEEEEeCCCCC
Confidence 4 6888999988888888888884 667787666422 2232 223 778899999999876642 35
Q ss_pred CeEEEEECCCCc
Q 005342 658 GQIDVYEAPTLN 669 (701)
Q Consensus 658 g~I~iwd~~~g~ 669 (701)
++|+.||+.+|+
T Consensus 405 ~~i~~~d~~tg~ 416 (710)
T 2xdw_A 405 GIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEEETTSSS
T ss_pred CEEEEEECCCCc
Confidence 789999998887
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.7e-12 Score=130.53 Aligned_cols=237 Identities=8% Similarity=-0.058 Sum_probs=162.5
Q ss_pred ceEEEEEcCCCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 394 QSRESTSLPDADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 394 ~V~~l~~spdg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
...+++++|+|+.++ +.+.++.|..|+.. ......+. ..+...+.+++++++|+.+++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~----~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~-- 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG----STGTTVLP---FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA-- 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECC---CCSCCSCCCEEECTTCCEEEEET-TTEEEEECT--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC----CcccceEe---eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC--
Confidence 367899999999777 55778999999875 33222211 12335678899999999555544 888988854
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
.++.... +.......+.+++++ |+.+++.. ++.|.+||..+.............+.
T Consensus 95 -------------------~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 153 (270)
T 1rwi_B 95 -------------------GSNNQTV--LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD 153 (270)
T ss_dssp -------------------TCSCCEE--CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCC
T ss_pred -------------------CCceEee--eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCce
Confidence 3322221 111223567899998 66555555 78999998765543332222334678
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 550 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
.++++|+| ++++...++.|.+||..+.........+...+.+++++++|.+.++...++.|.+||..+.... .
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~---~--- 227 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST---V--- 227 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE---E---
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce---e---
Confidence 99999999 7777777889999998876654433334467899999999988888778899999998764311 1
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
....+. ..+.+++++|+|+++++. .++.|++++....+.
T Consensus 228 ~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 228 LPFTGL---NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCCSC---SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eccCCC---CCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 111221 568999999999977775 799999999876554
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=9.6e-11 Score=119.16 Aligned_cols=272 Identities=10% Similarity=-0.005 Sum_probs=183.9
Q ss_pred ecCcceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-eE
Q 005342 325 QIMDWWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-SR 396 (701)
Q Consensus 325 ~h~~~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V~ 396 (701)
.+...+. ++++.|+ ..++.|.+||.. +...... . ..+.. +.
T Consensus 12 ~~~~~~~--~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~---------~-------------------~~~~~~~~ 60 (299)
T 2z2n_A 12 NQDTGPY--GITVSDKGKVWITQHKANMISCINLD-GKITEYP---------L-------------------PTPDAKVM 60 (299)
T ss_dssp SSSCCEE--EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE---------C-------------------SSTTCCEE
T ss_pred CcCCCcc--ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec---------C-------------------CcccCcee
Confidence 3445677 8888887 346788888877 4433220 0 01223 88
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 476 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 476 (701)
.++++|+|...++...++.|..|+.. +....+..+ .....+.+++++|+|+.+++...++.+..||.
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~------ 127 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-----GIIKEYTLP--NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD------ 127 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT------
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-----CcEEEEeCC--CcCCCceeeEECCCCCEEEEecCCceEEEECC------
Confidence 99999999998888878899999874 333333332 23467899999999987777666788888843
Q ss_pred ccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEEEE
Q 005342 477 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI 552 (701)
Q Consensus 477 ~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~ 552 (701)
++....... ......+..++++ |...++.. ++.|..||. +++.... .......+..++
T Consensus 128 ----------------~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 189 (299)
T 2z2n_A 128 ----------------DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT 189 (299)
T ss_dssp ----------------TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred ----------------CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE
Confidence 233221111 1234568889998 65555555 689999999 6665432 333445688999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc
Q 005342 553 LLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 630 (701)
Q Consensus 553 ~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~ 630 (701)
++++| +.++...++.|.+||. +++.... ...+...+.+++++++|++.++...++.|.+||. ++.. ..+. +.
T Consensus 190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~-~~ 263 (299)
T 2z2n_A 190 KGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII---EEYP-IQ 263 (299)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE---EEEE-CS
T ss_pred ECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce---EEEe-CC
Confidence 99999 7666667889999998 6654332 2334567899999999997777667899999998 4431 2222 22
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 631 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 631 ~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
.+. ..+.++++ ++|++.++...+.+..++..+++
T Consensus 264 -~~~---~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 264 -IKS---AEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp -SSS---CCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred -CCC---CccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 222 66899999 99988777656788888887654
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=2.9e-12 Score=133.32 Aligned_cols=236 Identities=9% Similarity=-0.020 Sum_probs=162.0
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccc---ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE---NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 515 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-- 515 (701)
-+.+.+++++|+|+.+++.+.++.+.+++........... ...-.+.+||+.++++... +..++...+..++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEECCC
Confidence 4679999999999988887777654443332221111100 1112466778888886643 223445678899999
Q ss_pred CCEEEEEe-CCeEEEEeCCCCc-EEEEe---------cCCCCCeEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCceEEe
Q 005342 516 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 581 (701)
Q Consensus 516 ~~~l~s~s-dg~I~iwd~~~~~-~~~~~---------~~~~~~i~~l~~sp-dg-~l~~gs-~dg~I~iwd~~~~~~~~~ 581 (701)
|+++++.. ++.|++||..... .+..+ .++......++++| +| ++++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77666666 7999999985442 45555 23344678999999 67 777775 689999999 56777776
Q ss_pred ecC----------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 582 LKG----------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 582 l~~----------h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
+.. +-.....++++|+ +.++++...+++|++||..+|+... .+. .. .+. ..+.+++|+| +.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~--~~~-~~-~~~---~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR--EIK-HA-SFG---RNVFAISYIP-GF 252 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--EEC-CT-TTT---TCEEEEEEET-TE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE--EEe-cc-ccC---CCcceeeecC-CE
Confidence 642 2234899999998 7788888889999999999775332 222 11 222 6788999999 43
Q ss_pred EEEE-E-------ecCeEEEEECCCCceeeeee---e----eeEEEEEeeE
Q 005342 651 HLLS-I-------HEGQIDVYEAPTLNHTSQVL---L----ISHIMFVQIV 686 (701)
Q Consensus 651 ~l~s-g-------~Dg~I~iwd~~~g~~~~~l~---~----i~~~~fs~~~ 686 (701)
.+++ | .+..|++||..+|+.+..+. + ..+++++|+.
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 3333 2 24589999999999998874 2 7888888764
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=4.4e-12 Score=128.23 Aligned_cols=240 Identities=13% Similarity=0.010 Sum_probs=170.1
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCC-CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 480 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~-~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~ 480 (701)
.++.|++++.|+.|.+||.. +++. +++.. +. ..+.++.++|+|+.++ +.++.|..|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~----tG~~~w~~~~----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~------------ 61 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD----TKEIVWEYPL----EKGWECNSVAATKAGEILF--SYSKGAKMI------------ 61 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT----TTEEEEEEEC----CTTCCCCEEEECTTSCEEE--ECBSEEEEE------------
T ss_pred CCcEEEeeCCCCEEEEEECC----CCeEEEEeCC----CccCCCcCeEECCCCCEEE--eCCCCEEEE------------
Confidence 45889999999999999986 4543 34332 22 4678899999999877 456777777
Q ss_pred ccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCC------CCCeEE
Q 005342 481 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP------PPIATY 550 (701)
Q Consensus 481 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~------~~~i~~ 550 (701)
|+ +|+.+-. +..+....+.++.+. |+++++.+ ++.|..+|. +|+.+..+... ......
T Consensus 62 ---------d~-~G~~~W~-~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~ 129 (276)
T 3no2_A 62 ---------TR-DGRELWN-IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ 129 (276)
T ss_dssp ---------CT-TSCEEEE-EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred ---------CC-CCCEEEE-EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence 44 4443322 222223467777777 77877765 467888886 78877776421 123456
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 629 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~ 629 (701)
+++.++| ++++.+.++.|..||.. |+.+.++..+ ..+.++...++|+.+++++.+++|..+|..+|+.+....-..+
T Consensus 130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 130 INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence 7889999 99999999999999987 9999888754 4566788889999999999999999999998875432221111
Q ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEEecC---------eEEEEEC-CCCceeeeeee------eeEEE
Q 005342 630 QTGLVPETTIVNHIQFHPDQIHLLSIHEG---------QIDVYEA-PTLNHTSQVLL------ISHIM 681 (701)
Q Consensus 630 ~~~~~~~~~~v~~v~~spdg~~l~sg~Dg---------~I~iwd~-~~g~~~~~l~~------i~~~~ 681 (701)
..... ..+.++...++|..++++.+| ..+++++ .+|+.+-++.. ++++|
T Consensus 208 ~~~~l---~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 208 EGVQL---FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp BSCCC---SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CCccc---cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 11122 457889999999999886433 3467777 57888877766 66654
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=2.9e-12 Score=133.28 Aligned_cols=251 Identities=11% Similarity=0.050 Sum_probs=171.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|++++|+|++..++..+.++.++.|.- .....+. .+...+.+++|+|+|+.++++..++.|.+||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~---- 73 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITA------EPWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP---- 73 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEEC------EEEEEEE----SSCCCEEEEEECTTSCEEEEETTTCEEEEECT----
T ss_pred cceeeecCCccceeEEeecccCccccc------ceeEEEe----ccCccccCcEECCCCCEEEEECCCCEEEEEeC----
Confidence 677889999988888888889999932 2222222 24566799999999997777778899999854
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C----CeEEEEeCCCCcEEEEec--CCC
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPP 545 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d----g~I~iwd~~~~~~~~~~~--~~~ 545 (701)
.+++.... . ..+...+.+++++ |+++++.. + +.|.+||..++.....+. .+.
T Consensus 74 -----------------~~~~~~~~-~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 74 -----------------ETKEIKRP-F-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp -----------------TTCCEEEE-E-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred -----------------CCCcEEEE-e-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 44543321 1 1345679999998 66666655 4 589999998776543333 234
Q ss_pred CCeEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCC
Q 005342 546 PIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVG 617 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~ 617 (701)
..+..++++|+| ++++... .+.|+.+|..+++.... ..+...+..++|+|+|+.++ +.+.++.|++||+.+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 568999999999 6665543 35788888766554432 22334578999999998654 555688999999964
Q ss_pred -Ceeeee---eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----------eeEEEE
Q 005342 618 -WKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----------ISHIMF 682 (701)
Q Consensus 618 -g~~~~~---~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----------i~~~~f 682 (701)
+..... .....+. ++ ..+..++++++|++.++. .++.|.+||. +++.+..+.. +.+++|
T Consensus 214 ~g~~~~~~~~~~~~~~~-~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFT-GH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp TSSSEEEEEEEEEEECC-SS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred CCcCcccccceEEEecC-CC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence 322111 1111111 21 467889999999987775 5789999998 5776666542 567888
Q ss_pred Eee
Q 005342 683 VQI 685 (701)
Q Consensus 683 s~~ 685 (701)
+|+
T Consensus 288 ~~d 290 (333)
T 2dg1_A 288 IPG 290 (333)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.48 E-value=2.6e-12 Score=147.97 Aligned_cols=242 Identities=11% Similarity=-0.023 Sum_probs=159.6
Q ss_pred CCCc-eEEEEEcCCCCeEE-----EEcCCCcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEECCC
Q 005342 391 DNNQ-SRESTSLPDADSAV-----CAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 463 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~-----s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 463 (701)
+|.. +..++|||||++|| .|+.+..|++||+. +++.. .-.+ .......++|+|||+.|+.++.|+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~----tg~~~~~~~~----~~~~~~~~~wspDg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD----SGEWSKVDVI----EGGKYATPKWTPDSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT----TCCBCSSCCB----SCCTTCCCEECTTSSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC----CCCCcCCccc----CcccccceEEecCCCEEEEEEecC
Confidence 5656 89999999999999 44556789999998 55433 1011 111126789999999999998876
Q ss_pred c-------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC--
Q 005342 464 T-------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-- 525 (701)
Q Consensus 464 ~-------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-- 525 (701)
. |++|++.++. ....++.. . ..+...+.++.|+ |++|+.++ ++
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~-----------------~~~~lv~~-~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEP-----------------SKDTVVHE-R-TGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCG-----------------GGCEEEEC-C-CCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred CCCCccccCCCCCEEEEEECCCCc-----------------hhceEEEe-c-CCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 5 7777653321 00113321 1 2345678899999 88887776 55
Q ss_pred --eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCce---EEeecCC-CCCeEEEEEe
Q 005342 526 --KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKT---KAKLKGH-QNRITCLAYS 595 (701)
Q Consensus 526 --~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs---~dg~I~iwd~~~~~~---~~~l~~h-~~~V~~v~~s 595 (701)
.|++||..++... .+..+...+....+ ++| +++.+. .++.|++||+.++.. ...+..+ ...+..++|+
T Consensus 251 ~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred ceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 7788877666543 34445555566666 566 555444 357999999987753 3333333 4467888888
Q ss_pred cCCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCCCc
Q 005342 596 LSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPTLN 669 (701)
Q Consensus 596 pdg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~g~ 669 (701)
++.++++...|+..++|.+. .|... .. +..+.. +.+..++++|+++.++. + ..++|++||+.+++
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~--~~---l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPV--RT---VQLPGV---GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEE--EE---CCCSSS---SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCee--EE---ecCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77788899999988888665 33211 22 222222 66788899999987764 2 46789999998887
Q ss_pred e
Q 005342 670 H 670 (701)
Q Consensus 670 ~ 670 (701)
.
T Consensus 400 ~ 400 (695)
T 2bkl_A 400 S 400 (695)
T ss_dssp E
T ss_pred E
Confidence 4
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=7.3e-11 Score=131.18 Aligned_cols=265 Identities=12% Similarity=0.042 Sum_probs=172.4
Q ss_pred CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 005342 341 ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLK 420 (701)
Q Consensus 341 s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~ 420 (701)
..+++|.++|..+++.+..+ .. ...+..+.|+|||+++++++.|+.|.+||
T Consensus 174 ~~~~~V~viD~~t~~v~~~i----------~~-------------------g~~p~~v~~SpDGr~lyv~~~dg~V~viD 224 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTVL----------DT-------------------GYAVHISRLSASGRYLFVIGRDGKVNMID 224 (567)
T ss_dssp TTTTEEEEEETTTCCEEEEE----------EC-------------------SSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEE----------eC-------------------CCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence 55889999999999887763 11 11256899999999999999999999999
Q ss_pred ccccCCCCc-eeEeecCCCCCCCCEEEEEEe----cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342 421 LQLINEPSE-CRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (701)
Q Consensus 421 ~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~s----pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~ 494 (701)
+... +.+ ...+.. ......++|+ |||+++++++. ++++.++|..+ .
T Consensus 225 ~~~~--t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---------------------~ 276 (567)
T 1qks_A 225 LWMK--EPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---------------------L 276 (567)
T ss_dssp TTSS--SCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---------------------C
T ss_pred CCCC--CCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---------------------C
Confidence 8410 222 222221 3356789999 69999888877 69999996533 3
Q ss_pred eEEeecccC--------CC-CCCeEEEEec--CCEEE-EEe-CCeEEEEeCCCCcE--EEEecCCCCCeEEEEEcCCC-e
Q 005342 495 LVMTNDIAA--------DP-KDSISCFALR--GSHLF-SAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-L 558 (701)
Q Consensus 495 ~~~~~~~~~--------~~-~~~v~~l~~s--~~~l~-s~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~ 558 (701)
+.+...-.. .| ...+..+..+ +..++ +.. +|.|.++|..+.+. +..+. .......+.|+|+| +
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRY 355 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCE
Confidence 322110000 01 2256677777 44444 444 69999999876542 23333 34456789999999 5
Q ss_pred EEE-EeCCCcEEEEeCCCCceEEeecC-----CCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCee--eeeeeeee
Q 005342 559 FAF-GFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKK--LCSKFLHS 628 (701)
Q Consensus 559 l~~-gs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~--~~~~~l~~ 628 (701)
+++ +..+++|.++|..+++.+..+.. |.+.-.. -++|++. ..+++. .+++|.++|..+++. ...+.+++
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 554 45678999999999988776653 4332222 2588754 444543 568999999987320 00112222
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEEe--------cCeEEEEECCCC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL 668 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~--------Dg~I~iwd~~~g 668 (701)
+.... ..-..+..+|+++++.+.. .++|.++|+.+.
T Consensus 435 i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 435 FPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 32221 2224577899999999853 469999999877
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=3.2e-12 Score=147.23 Aligned_cols=238 Identities=9% Similarity=-0.041 Sum_probs=155.7
Q ss_pred cCcceeeeEEEEccC------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 326 IMDWWVPYCINVMPN------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 326 h~~~v~~~~l~fspd------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
|...+. .++|||| +.+.+|++||+.+|+.+.. ..+.+.
T Consensus 119 ~~~~~~--~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------~~~~~~-------------------- 168 (695)
T 2bkl_A 119 GTVSLG--TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------DVIEGG-------------------- 168 (695)
T ss_dssp SCEEEE--EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------CCBSCC--------------------
T ss_pred CCEEEE--EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------cccCcc--------------------
Confidence 444566 8999999 3457999999999876511 001111
Q ss_pred ceEEEEEcCCCCeEEEEcCCCc-------------EEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEE
Q 005342 394 QSRESTSLPDADSAVCAKSLEK-------------SVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVAL 459 (701)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~d~~-------------v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~ 459 (701)
....++|+|||+.|+.++.|.. |++|++. +++.. .+......+...+.++.|||||++|+.+
T Consensus 169 ~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~----t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 169 KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG----TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT----SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC----CCchhceEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence 0135889999999999988776 9999997 33311 1122333455678999999999999888
Q ss_pred ECCC--cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe----CCeEEEEeC
Q 005342 460 TQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS----GGKISIFSL 532 (701)
Q Consensus 460 s~dg--~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s----dg~I~iwd~ 532 (701)
+.++ ...+|-+ +..++.... +. .+...+....++ |++++.+. ++.|.+||+
T Consensus 245 ~~~~~~~~~l~~~-------------------~~~~~~~~~--l~-~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 245 ILRGWSENDVYWK-------------------RPGEKDFRL--LV-KGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp EEETTTEEEEEEE-------------------CTTCSSCEE--EE-ECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBT
T ss_pred EeCCCCceEEEEE-------------------cCCCCceEE--ee-cCCCceEEEEecCCcEEEEECCCCCCCEEEEEeC
Confidence 7655 4444422 333443221 11 233344555556 66434433 378999999
Q ss_pred CCCcE---EEEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCceEEeecCC-CCCeEEEEEecCCCEEEEE-
Q 005342 533 ETFQT---LATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKGH-QNRITCLAYSLSLNVLVSS- 604 (701)
Q Consensus 533 ~~~~~---~~~~~~~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~- 604 (701)
.++.. ...+..+ ...+..++++ ++ ++++...|+..++|.+. +++....+..+ .+.+..++++|+++.++..
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred CCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 87653 3333333 4457888888 66 88899999987777554 45566666655 5678888999999866632
Q ss_pred ---eCCCeEEEEECCCCee
Q 005342 605 ---GADAQLCVWDAVGWKK 620 (701)
Q Consensus 605 ---s~D~~I~vwd~~~g~~ 620 (701)
...++|++||+.+++.
T Consensus 382 ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTEEEEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEECCCCcE
Confidence 2357899999998863
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=2e-11 Score=124.71 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=161.7
Q ss_pred ccceeEEEeecCcceeeeEEEEccC--------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCc
Q 005342 316 KSRLLSLIKQIMDWWVPYCINVMPN--------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSS 387 (701)
Q Consensus 316 ~~~~~~~l~~h~~~v~~~~l~fspd--------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~ 387 (701)
.+..+..+..+..... +++|+|+ ..++.|..||..++ ...+
T Consensus 16 ~~~~~~~l~~~~~~~e--g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~--------------------------- 64 (296)
T 3e5z_A 16 AGAEARRLADGFTWTE--GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE--------------------------- 64 (296)
T ss_dssp TTCCCEEEECCCSSEE--EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE---------------------------
T ss_pred CCCcEEEEecCCcccc--CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE---------------------------
Confidence 3445566666667777 8999998 45788999988876 3321
Q ss_pred cccCCCc-eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecC-CCCCCCCEEEEEEecCCCEEEEEECCC--
Q 005342 388 CFNDNNQ-SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTA-- 463 (701)
Q Consensus 388 ~l~~h~~-V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg-- 463 (701)
..+.. +.+++++|+|+++++...++.|.+|+.. +++...+... .......+.+++++|+|+.+++.+..|
T Consensus 65 --~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 65 --MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP----GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp --ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST----TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred --ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC----CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccc
Confidence 12334 7899999999998888888999999986 5554443211 111224567899999999777632111
Q ss_pred -------------cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeE
Q 005342 464 -------------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 527 (701)
Q Consensus 464 -------------~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I 527 (701)
.-.||.+ ++. +.... + ..+......++|+ |+.+++.+ ++.|
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~-------------------~~~-g~~~~--~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRL-------------------APD-GTLSA--P-IRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEE-------------------CTT-SCEEE--E-ECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred cccccccccccCCCcEEEEE-------------------CCC-CCEEE--e-ecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 1233322 444 44322 1 1344567889998 77775555 7899
Q ss_pred EEEeCC-CCcE---EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEE-ecCCCEE
Q 005342 528 SIFSLE-TFQT---LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY-SLSLNVL 601 (701)
Q Consensus 528 ~iwd~~-~~~~---~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~-spdg~~l 601 (701)
.+||+. +++. ...+..+...+..++++++| ++++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|
T Consensus 196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence 999986 5554 33443344556789999999 54444 7899999976 778888887777 999999 5899988
Q ss_pred EEEeCCCeEEEEECCCC
Q 005342 602 VSSGADAQLCVWDAVGW 618 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g 618 (701)
+.++.+ .+..++.++.
T Consensus 272 ~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEETT-EEEEEECSCC
T ss_pred EEEcCC-eEEEEEcccc
Confidence 888875 4556666664
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=5.2e-10 Score=113.67 Aligned_cols=234 Identities=9% Similarity=0.011 Sum_probs=165.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.++++.|+|+..++...++.|..|+.. +....+..+ .+...+.+++++++|...++...++.|..|+.
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~---- 85 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-----GKITEYPLP--TPDAKVMCLTISSDGEVWFTENAANKIGRITK---- 85 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT----
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCC--cccCceeeEEECCCCCEEEeCCCCCeEEEECC----
Confidence 8899999999988888778899999974 233333322 23467999999999997777666788888854
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~ 550 (701)
. +......+ ......+.+++++ |...++.. ++.|..||. +++.... .......+..
T Consensus 86 -----------------~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 86 -----------------K-GIIKEYTL-PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp -----------------T-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred -----------------C-CcEEEEeC-CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence 2 22211111 1234568889998 65555555 789999998 5554332 2334456899
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
++++++| .+++...++.|..||. +++.... +..+...+.+++++++|++.++...++.|.+||. +++.. .+.
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~- 219 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT---EFK- 219 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE-
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE---EEE-
Confidence 9999999 7676667789999998 6665442 3334456889999999998777777889999999 66422 122
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
...+ . ..+.+++++++|++.++. .++.|..||. +++.
T Consensus 220 ~~~~-~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 257 (299)
T 2z2n_A 220 IPTP-N---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII 257 (299)
T ss_dssp CSST-T---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred CCCC-C---CCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence 2222 2 678999999999977665 6789999998 5653
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.43 E-value=2.2e-11 Score=140.59 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=161.3
Q ss_pred CCCCeEEEEcCCC---cEEEEeccccCCCCceeEeecC---CCCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEec
Q 005342 402 PDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLWKW 470 (701)
Q Consensus 402 pdg~~l~s~s~d~---~v~iw~~~~~~~~~~~~~l~~~---~~~~~~~v~~l~~spdg~~l~s~s~dg-----~i~vwd~ 470 (701)
|+|++++....++ .-.+|..... .+....+.-+ ..++...+..++|||||++|+.++.++ .|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 8888877654332 1245554311 2222222101 112334688999999999998877643 6777754
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCe----------------EEEEe
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISIFS 531 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~----------------I~iwd 531 (701)
.+++.....+ ....+.+++|+ |+.|+.++ ++. |++|+
T Consensus 159 ---------------------~tg~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 214 (710)
T 2xdw_A 159 ---------------------DGAKELPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHV 214 (710)
T ss_dssp ---------------------TTTEEEEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEE
T ss_pred ---------------------CCCCCCcccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEE
Confidence 5565443212 11235678999 78888877 654 99999
Q ss_pred CCCCcE--EEEecC--CCCCeEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC------Cc-eEEeecCCCCCeEEEEE
Q 005342 532 LETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCLAY 594 (701)
Q Consensus 532 ~~~~~~--~~~~~~--~~~~i~~l~~spdg-~l~~gs~-----dg~I~iwd~~~------~~-~~~~l~~h~~~V~~v~~ 594 (701)
+.+++. ...+.. +...+..+.|+||| +|+.++. +..|++||+.+ +. ....+..+...+.. .|
T Consensus 215 l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 293 (710)
T 2xdw_A 215 LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YV 293 (710)
T ss_dssp TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EE
T ss_pred CCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EE
Confidence 988762 223332 34557899999999 7776654 56899999986 43 35566666666655 58
Q ss_pred ecCCCEEEEEeCC----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe--EEEEECCC
Q 005342 595 SLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ--IDVYEAPT 667 (701)
Q Consensus 595 spdg~~l~s~s~D----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~--I~iwd~~~ 667 (701)
+|+|+.|+..+.+ +.|.+||+.++....... +..++. ...+..++|++++.+++++ .|+. |.+|++.+
T Consensus 294 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LVPEHE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---ccCCCC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence 8999987766653 369999998863211122 222321 0367889999777777775 6764 67788878
Q ss_pred Cceeeeeee----eeEEEEEee
Q 005342 668 LNHTSQVLL----ISHIMFVQI 685 (701)
Q Consensus 668 g~~~~~l~~----i~~~~fs~~ 685 (701)
|+.++.+.. +.+++++|+
T Consensus 369 g~~~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 369 GALLKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp CCEEEEECCCSSEEEEEECCTT
T ss_pred CCEEEecCCCCceEEEEecCCC
Confidence 887777764 777778764
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=3.2e-10 Score=119.66 Aligned_cols=260 Identities=11% Similarity=-0.008 Sum_probs=164.4
Q ss_pred eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CCC
Q 005342 345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SLE 414 (701)
Q Consensus 345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d~ 414 (701)
+|.++|..+++.+..+ +. +.. - .++++|||++++.+. .++
T Consensus 48 ~v~v~D~~t~~~~~~i----------~~------------------g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 48 QQWVLDAGSGSILGHV----------NG------------------GFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred EEEEEECCCCeEEEEe----------cC------------------CCC-C-CeEECCCCCEEEEEeccccccccCCCCC
Confidence 8899999988876652 11 000 1 589999999999886 367
Q ss_pred cEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEE
Q 005342 415 KSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQL 488 (701)
Q Consensus 415 ~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~ 488 (701)
.|.+||.. +.+.. .+..+... +......++|+|||+++++++. ++.|.++
T Consensus 98 ~v~viD~~----t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~vi-------------------- 153 (373)
T 2mad_H 98 YVEVFDPV----TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV-------------------- 153 (373)
T ss_pred eEEEEECC----CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEE--------------------
Confidence 89999997 33222 22221000 0123458899999999998875 4778887
Q ss_pred eeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec-----CCCCC-eEEEEEcCCC-eE
Q 005342 489 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-----NPPPI-ATYFILLPQD-LF 559 (701)
Q Consensus 489 ~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~-----~~~~~-i~~l~~spdg-~l 559 (701)
| .+++++...+. ....+ .+... ...+++.+ ||.+.++|. +++...... ....+ .....+.+++ .+
T Consensus 154 -D-~t~~~~~~~i~--~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 227 (373)
T 2mad_H 154 -V-QGGSSDDQLLS--SPTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred -E-CCCCEEeEEcC--CCceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEE
Confidence 5 55554432011 11111 11111 34445555 899999999 887664322 11122 2335667776 44
Q ss_pred EEEeCCCcEEEEeCCCCc--eEEeecC----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCC
Q 005342 560 AFGFDDSSILVHCPCTKK--TKAKLKG----------HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVG 617 (701)
Q Consensus 560 ~~gs~dg~I~iwd~~~~~--~~~~l~~----------h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd~~~ 617 (701)
+..+..+.+++.|+.++. .+..+.- .......++++||++.++.+.. ++.|.++|..+
T Consensus 228 ~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence 444578899999987552 2233221 1123445789999887766543 35899999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l 674 (701)
++.+. ++..+ ....+++|+|||+ .++++ .++.|.+||..+++.++++
T Consensus 308 ~~vv~-----~i~~g-----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 308 GQTSS-----QISLG-----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CEEEE-----EEECC-----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 75432 23223 4468999999999 66665 4899999999999999884
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.42 E-value=5.2e-11 Score=123.73 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=165.0
Q ss_pred CcccccccCccceeEEEe------ecCcceeeeEEEEccC------CCCCeEEEEeccCCccccccccccCCCCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIK------QIMDWWVPYCINVMPN------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRP 374 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~------~h~~~v~~~~l~fspd------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (701)
+.|.++|.++++....+. ....... .+.+..+ ..+++|.+||..+++.+..+ +
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~--~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i----------~--- 81 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQ--SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI----------T--- 81 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEE--EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE----------E---
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccce--EEEEECCEEEEEEcCCCEEEEEECcccEEEEEc----------C---
Confidence 577888888877655431 1122344 5666555 55789999999999887762 1
Q ss_pred cccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCcee-EeecCC-CCCCCCEEEEEEecC
Q 005342 375 LDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPD-NSFGGRVVRLIYSHS 452 (701)
Q Consensus 375 ~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~-~l~~~~-~~~~~~v~~l~~spd 452 (701)
.......++++|+++..++...++.|.+||.. +++.. .+.... .+.......+++ +
T Consensus 82 ----------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~----t~~~~~~i~~g~~~~~~~~p~~i~~--~ 139 (328)
T 3dsm_A 82 ----------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK----TYEITGYIECPDMDMESGSTEQMVQ--Y 139 (328)
T ss_dssp ----------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT----TTEEEEEEECTTCCTTTCBCCCEEE--E
T ss_pred ----------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC----CCeEEEEEEcCCccccCCCcceEEE--E
Confidence 11126789999999655555578999999997 55443 222211 001114456666 3
Q ss_pred CCEEEEEE--CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---
Q 005342 453 GDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--- 524 (701)
Q Consensus 453 g~~l~s~s--~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d--- 524 (701)
+..++++. .++.|.++|. .++++... +.. ......++++ |++++++. +
T Consensus 140 ~~~lyv~~~~~~~~v~viD~---------------------~t~~~~~~-i~~--g~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDT---------------------ETDKVVDE-LTI--GIQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp TTEEEEEECTTCCEEEEEET---------------------TTTEEEEE-EEC--SSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred CCEEEEEcCCCCCEEEEEEC---------------------CCCeEEEE-EEc--CCCccceEEcCCCCEEEEECCCccC
Confidence 44555555 3788888854 55554432 211 2234567777 65555544 4
Q ss_pred -------CeEEEEeCCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe--ecCCCCCeEEEE
Q 005342 525 -------GKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLA 593 (701)
Q Consensus 525 -------g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~v~ 593 (701)
+.|.++|..+++....+... ......++++|++ .++++.. .|++||..+++.... +..+......++
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~ 273 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT 273 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence 68999999999887777533 3367899999999 7666544 899999988876421 222235688999
Q ss_pred Eec-CCCEEEEE----eCCCeEEEEECCCCeeee
Q 005342 594 YSL-SLNVLVSS----GADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 594 ~sp-dg~~l~s~----s~D~~I~vwd~~~g~~~~ 622 (701)
++| ++.+.++. ..++.|.+||.. |+.+.
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred EcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 999 56666666 678999999998 75443
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.3e-11 Score=143.23 Aligned_cols=242 Identities=10% Similarity=-0.010 Sum_probs=155.7
Q ss_pred CCCc-eEEEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
+|.. +..++|||||++||.++.+ ..|++||+. +++...... +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----CCCCCCccC----CCceeccEEEECC-CEEEEEEecCc
Confidence 4444 8899999999999987654 469999998 665544222 1112357889999 99998887654
Q ss_pred --------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CC--
Q 005342 465 --------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG-- 525 (701)
Q Consensus 465 --------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg-- 525 (701)
|.+|++.++. ....++.. . ..+...+.++.|| |++|+..+ ++
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~-----------------~~~~lv~~-~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQ-----------------SADQPVFA-T-PELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp --------CCCCCEEEEEETTSCG-----------------GGCEEEEC-C-TTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred ccccccccCCCCCEEEEEECCCCc-----------------hhCEEEec-c-CCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 5555442210 00112211 1 1233457889999 88887766 54
Q ss_pred ---eEEEEeCCCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCC--ceEEeecCCCCCeEEEE
Q 005342 526 ---KISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTK--KTKAKLKGHQNRITCLA 593 (701)
Q Consensus 526 ---~I~iwd~~~~--~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~--~~~~~l~~h~~~V~~v~ 593 (701)
.|++||+.++ +....+..+...+.... +|+| .|+..+.+ +.|++||+.++ .....+.++...+..++
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred CcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 8999999876 31455555555555553 4888 66666653 46999999874 34444455555677788
Q ss_pred EecCCCEEEEEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE---E--ecCeEEEEECCC
Q 005342 594 YSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I--HEGQIDVYEAPT 667 (701)
Q Consensus 594 ~spdg~~l~s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s---g--~Dg~I~iwd~~~ 667 (701)
|+ ++.++++...|+..+||.+. +|.. ... +..... +.+..++++|+++.++. + ..++|++||+.+
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~--~~~---l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFDLDGKP--AGA---VSLPGI---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEETTSCE--EEE---CBCSSS---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EE-CCEEEEEEEECCEEEEEEEeCCCCc--eee---ccCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 87 56678888889987777554 3321 122 222222 67889999999876653 2 467899999988
Q ss_pred Cce
Q 005342 668 LNH 670 (701)
Q Consensus 668 g~~ 670 (701)
|+.
T Consensus 442 g~~ 444 (741)
T 1yr2_A 442 AKT 444 (741)
T ss_dssp TEE
T ss_pred CcE
Confidence 873
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=8.1e-11 Score=122.94 Aligned_cols=273 Identities=11% Similarity=0.029 Sum_probs=179.9
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------C
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------S 412 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~ 412 (701)
+++|.+.|..+++.+..+ +. +.. - .++++|||++++.++ .
T Consensus 58 ~~~V~ViD~~t~~v~~~I----------~v------------------G~~-P-~va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMI----------DG------------------GFL-P-NPVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp SEEEEEEETTTTEEEEEE----------EE------------------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCeEEEEE----------EC------------------CCC-C-cEEECCCCCEEEEEcccccccccCCC
Confidence 578999999988877763 11 111 2 389999999988775 3
Q ss_pred CCcEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceee
Q 005342 413 LEKSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMES 486 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i 486 (701)
++.|.+||.. +.+.. .+..+... .......++++|||++++++.. ++.|.++|
T Consensus 108 ~~~VsviD~~----t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID----------------- 166 (386)
T 3sjl_D 108 TDYVEVFDPV----TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD----------------- 166 (386)
T ss_dssp EEEEEEECTT----TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE-----------------
T ss_pred CCEEEEEECC----CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE-----------------
Confidence 5789999998 44432 23232100 0124567899999999988874 68898885
Q ss_pred EEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCC-CcEEEEecCC----CCCe-EEEEEc-CC
Q 005342 487 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANP----PPIA-TYFILL-PQ 556 (701)
Q Consensus 487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~-~~~~~~~~~~----~~~i-~~l~~s-pd 556 (701)
..+++++.. +.. . .. ...+. .+.+++.+ ||++.+.++.+ ++.......+ ..++ ....|. ++
T Consensus 167 ----~~t~~vv~t-I~v-~--g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d 237 (386)
T 3sjl_D 167 ----LEGKAFKRM-LDV-P--DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 237 (386)
T ss_dssp ----TTTTEEEEE-EEC-C--SE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred ----CCCCcEEEE-EEC-C--Cc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence 466665543 211 1 11 12233 45566666 99999999976 5543322111 1222 224554 67
Q ss_pred CeEEEEeCCCcEEEEeCCCCc--eEEeec---------C-CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEE
Q 005342 557 DLFAFGFDDSSILVHCPCTKK--TKAKLK---------G-HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWD 614 (701)
Q Consensus 557 g~l~~gs~dg~I~iwd~~~~~--~~~~l~---------~-h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd 614 (701)
|.++..+.+|.|++.|..++. .+..+. + ..+....++++|+++.++.... .++|.+.|
T Consensus 238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 744446678999999987654 333332 1 1234456788999887766532 25799999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
+++++.+....+. ..++++.++||++ +|+++ .++.|.++|..+++.+++++. -+.+.++++
T Consensus 318 ~~t~kv~~~i~vg----------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 318 AKTGERLAKFEMG----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTTCCEEEEEEEE----------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCCeEEEEEECC----------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 9998755444443 5678999999997 67664 489999999999999999987 677788776
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=2.7e-10 Score=116.93 Aligned_cols=235 Identities=11% Similarity=0.108 Sum_probs=157.1
Q ss_pred eEEEEEcCCCCeEEE-------EcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecC-CCEEEEEECCCcE
Q 005342 395 SRESTSLPDADSAVC-------AKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHS-GDFLVALTQTATH 465 (701)
Q Consensus 395 V~~l~~spdg~~l~s-------~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spd-g~~l~s~s~dg~i 465 (701)
..+++|+++|+.+++ +..++.|..|+.. +++...+..+. .++...+.+++++++ |+. ..++..+.|
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l-~v~~~~~~l 94 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK----TGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGL 94 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTT----TCCEEEEECCEETTEECCEEEEEECSSSSEE-EEEETTTEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC----CCcEEEEEecccCCCCCCCceEEEecCCCcE-EEEECCCCE
Confidence 678999999998888 6778899999976 55544433210 113467899999999 664 444544567
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEee-c--ccCCCCCCeEEEEec--CCEEEEEe-C---------------
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-D--IAADPKDSISCFALR--GSHLFSAS-G--------------- 524 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~--~~~~~~~~v~~l~~s--~~~l~s~s-d--------------- 524 (701)
.+||. . ++.... . ........+.+++++ |++.++.. +
T Consensus 95 ~~~d~---------------------~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 95 LVVQT---------------------D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEET---------------------T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred EEEeC---------------------C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 77754 3 332210 0 001112357789998 66655554 4
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCeEEEEEc----CCC-eEEEE-eCCCcEEEEeCC-CCc-----eEEeecCCC-CCeEE
Q 005342 525 GKISIFSLETFQTLATFANPPPIATYFILL----PQD-LFAFG-FDDSSILVHCPC-TKK-----TKAKLKGHQ-NRITC 591 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s----pdg-~l~~g-s~dg~I~iwd~~-~~~-----~~~~l~~h~-~~V~~ 591 (701)
+.|..||.. ++...... +......++++ |+| .++++ ..++.|++||.. +++ ....+.++. ..+..
T Consensus 153 ~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 578888875 55433322 33456889999 999 55544 567899999976 443 233344444 56889
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
++++++|++.++...++.|.+||..+++.. ..+. .+. ..+.+++|+|+|+.|+++ .++.|..|++..
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~--~~~~----~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPK--MRIR----CPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCS--EEEE----CSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEe--EEEe----CCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998888888899999999866432 2222 222 668999999999966654 467999999864
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.37 E-value=2.5e-10 Score=114.51 Aligned_cols=193 Identities=9% Similarity=-0.016 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.+++++|+|+.+++.. ++.|.+|+.. ......+.. .....+.+++++|+|+.+++...++.|.+|+.
T Consensus 69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~----~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~---- 136 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF-NNRVVTLAAG----SNNQTVLPF---DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA---- 136 (270)
T ss_dssp CCCEEECTTCCEEEEET-TTEEEEECTT----CSCCEECCC---CSCSSEEEEEECTTCCEEEEEGGGTEEEEECT----
T ss_pred cceeEECCCCCEEEEcC-CCEEEEEeCC----CceEeeeec---CCcCCCcceEECCCCCEEEEECCCCEEEEEEC----
Confidence 66799999999777766 8899999986 433332211 12357899999999997666666788988853
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.+..... ........+.+++++ |+.+++.. ++.|.+||..+.............+..+
T Consensus 137 -----------------~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 197 (270)
T 1rwi_B 137 -----------------GSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI 197 (270)
T ss_dssp -----------------TCCSCEE--CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEE
T ss_pred -----------------CCceeEe--eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEE
Confidence 2221111 111223356788888 66555555 6899999987765443333333668999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 552 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 552 ~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
+++++| ++++...++.|.+||..+.........+...+.+++++|+|+++++.+.+++|++++....
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999999 7777777889999998765443322234457899999999998888899999999998874
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=4.3e-09 Score=106.88 Aligned_cols=230 Identities=10% Similarity=-0.007 Sum_probs=157.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+..+++.++|+..++...++.|..++.. ++...+..+ .....+.++++.++|+..++...++.|..+|.
T Consensus 64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-----g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~---- 132 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTENGANKIGKLSKK-----GGFTEYPLP--QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA---- 132 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT----
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCC-----CCeEEecCC--CCCCCCccceECCCCCEEEEccCCCeEEEECC----
Confidence 7889999999988888778889999874 333333322 23467899999999987776666788888854
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE-ecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~ 550 (701)
. +......+ ......+.+++++ |+..++.. ++.|..+|. +++.... .......+..
T Consensus 133 -----------------~-g~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 192 (300)
T 2qc5_A 133 -----------------D-GTIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVG 192 (300)
T ss_dssp -----------------T-SCEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred -----------------C-CCEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcce
Confidence 3 33222112 1234567889998 66555555 689999998 5554432 2233456889
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
++++++| +.++....+.|.+||. +++.... +..+...+.+++++++|++.++...++.|..||. ++... .+.
T Consensus 193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~- 266 (300)
T 2qc5_A 193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ---EYQ- 266 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE---EEE-
T ss_pred EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE---EEE-
Confidence 9999999 6666666778999998 5554332 3334567899999999997777767799999998 44321 222
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
+..+. ..+.+++++++|++.+++.. .|..+|..
T Consensus 267 ~~~~~----~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 267 LQTEN----AEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp CCSTT----CCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred CCccC----CccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 22222 56789999999987666554 77777653
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.33 E-value=1.1e-10 Score=118.02 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=141.5
Q ss_pred CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCC-CCeEEEEec--CCEEEEEeCCeEE
Q 005342 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKIS 528 (701)
Q Consensus 452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~v~~l~~s--~~~l~s~sdg~I~ 528 (701)
.++.|++++.|+.|.+| |.++|+.+-. +. .+. ..+.+++++ |++++ +.++.|.
T Consensus 4 ~~~~lv~~~~~~~v~~~---------------------d~~tG~~~w~-~~-~~~~~~~~~~~~~pdG~ilv-s~~~~V~ 59 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAII---------------------NKDTKEIVWE-YP-LEKGWECNSVAATKAGEILF-SYSKGAK 59 (276)
T ss_dssp CCEEEEECTTCSEEEEE---------------------ETTTTEEEEE-EE-CCTTCCCCEEEECTTSCEEE-ECBSEEE
T ss_pred CCcEEEeeCCCCEEEEE---------------------ECCCCeEEEE-eC-CCccCCCcCeEECCCCCEEE-eCCCCEE
Confidence 45678888889999999 4466665432 22 222 357788887 77777 4478899
Q ss_pred EEeCCCCcEEEEecCC-CCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeec------CCCCCeEEEEEecCCC
Q 005342 529 IFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK------GHQNRITCLAYSLSLN 599 (701)
Q Consensus 529 iwd~~~~~~~~~~~~~-~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~------~h~~~V~~v~~spdg~ 599 (701)
.||. +++.+..+..+ ...+.++.+.|+| .+++.+. ++.|..+|. +++.+..+. ++......+++.++|+
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 9999 89999999865 3578899999999 8888777 788988885 777776654 2223455678899999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
++++.+.++.|..||.. |+.+.. +. .+ ....++...++|+.++++ .++.|..+|..+|+.+.++.
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~--~~---~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNS--VK---LS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEE--EE---CS-----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEEecCCCEEEEECCC-CCEEEE--EE---CC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99999999999999998 764432 22 11 345567889999999886 56689999999999988875
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.32 E-value=8.2e-09 Score=104.77 Aligned_cols=249 Identities=12% Similarity=0.032 Sum_probs=170.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.++++.++|+..++...++.|..|+.. ++...+..+ .....+.+++++++|+..++...++.|..||.
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~---- 90 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVP--TPDAKVMCLIVSSLGDIWFTENGANKIGKLSK---- 90 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT----
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECC--CCCCcceeEEECCCCCEEEEecCCCeEEEECC----
Confidence 7899999999988888888999999874 233333322 23467899999999987666655788888854
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEE-EecCCCCCeEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-TFANPPPIATY 550 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~-~~~~~~~~i~~ 550 (701)
. +....... ......+.+++++ |.+.++.. ++.|..+|.. ++... .+......+..
T Consensus 91 -----------------~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 91 -----------------K-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp -----------------T-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred -----------------C-CCeEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 3 33221111 1233568889998 66666655 7899999987 65442 23333556899
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEe-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeee
Q 005342 551 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 628 (701)
Q Consensus 551 l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~ 628 (701)
++++++| +.++...++.|..+|. +++.... ...+...+..++++++|++.++....+.|.+||. +++.. ...
T Consensus 151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~- 224 (300)
T 2qc5_A 151 ITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS---EYD- 224 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE-
T ss_pred EEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE---EEE-
Confidence 9999999 7676666889999998 5554432 2234457899999999988777777789999998 44322 121
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee-eee----eeEEEEEee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ-VLL----ISHIMFVQI 685 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~-l~~----i~~~~fs~~ 685 (701)
+..+ . ..+.+++++++|++.++. .++.|..||. +++.... ++. +.++++++.
T Consensus 225 ~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 282 (300)
T 2qc5_A 225 IPTP-N---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKD 282 (300)
T ss_dssp CSST-T---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTT
T ss_pred CCCC-C---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCC
Confidence 2222 2 668899999999966665 5789999998 5554321 221 666666654
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=1.7e-10 Score=132.67 Aligned_cols=240 Identities=7% Similarity=0.008 Sum_probs=155.3
Q ss_pred CCCc-eEEEEEcCCCCeEEEE-----cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc
Q 005342 391 DNNQ-SRESTSLPDADSAVCA-----KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 464 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s~-----s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 464 (701)
+|.. +..++|||||++||.+ +....|++||+. +++.....+ +......++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----SKQPLETPL----KDVKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----TCSEEEEEE----EEEESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----CCCCCcccc----CCceeccEEEe-CCCEEEEEEecCc
Confidence 4445 8899999999999853 333679999998 666544322 11113567899 9999999888743
Q ss_pred -------------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC-CCCCeEEEEec--CCEEEEEe--C--
Q 005342 465 -------------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-PKDSISCFALR--GSHLFSAS--G-- 524 (701)
Q Consensus 465 -------------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~l~~s--~~~l~s~s--d-- 524 (701)
|++|++.+.. ....++.. . .. +.....++.++ |++|+... +
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~-----------------~~~~~v~~-~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQ-----------------EDDRLVFG-A-IPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp C-------CCCCEEEEEETTSCG-----------------GGCEEEES-C-SGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred ccccccccCCCcEEEEEECCCCc-----------------ccceEEEe-c-CCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 6666553211 11123321 1 12 34456788898 77765443 2
Q ss_pred -CeEEEEeCCCCc-EEEEecCCCCCeEEEEEcCCC--eEEEEeCC---CcEEEEeCCCCce--EEeecCCCCCeEEEEEe
Q 005342 525 -GKISIFSLETFQ-TLATFANPPPIATYFILLPQD--LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYS 595 (701)
Q Consensus 525 -g~I~iwd~~~~~-~~~~~~~~~~~i~~l~~spdg--~l~~gs~d---g~I~iwd~~~~~~--~~~l~~h~~~V~~v~~s 595 (701)
+.|+++|+.++. ....+..+....... ++++| +++....+ +.|..+|+.++.. .+.+..|...+. .|+
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s 334 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH 334 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE
Confidence 589999998764 445555565555555 66666 44444443 5899999987654 345556666655 899
Q ss_pred cCCCEEEEEeCCC---eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec----CeEEEEECCC
Q 005342 596 LSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPT 667 (701)
Q Consensus 596 pdg~~l~s~s~D~---~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D----g~I~iwd~~~ 667 (701)
|++++|+....++ .|++||+.++.. ..+. + ... +.+..+.++|+++.++.+ .+ ++++.||+.+
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~~---~~l~-~--p~~---~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKRV---REVA-L--PGL---GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCEE---EEEC-C--SSS---SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCee---EEee-c--CCC---ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 9999887665543 799999986531 2222 2 222 567788889998877653 33 7899999988
Q ss_pred Cce
Q 005342 668 LNH 670 (701)
Q Consensus 668 g~~ 670 (701)
++.
T Consensus 406 g~~ 408 (693)
T 3iuj_A 406 GAI 408 (693)
T ss_dssp CCE
T ss_pred CeE
Confidence 764
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.2e-09 Score=117.01 Aligned_cols=236 Identities=10% Similarity=0.027 Sum_probs=156.5
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC--cEEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--THKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~ 472 (701)
.+.++|+|+|+++++...++.|+.||.. ++.+..+... ..... ++|+|+++.++++..++ .|.+++..
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~----~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~- 202 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVD----DNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA- 202 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETT----TTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG-
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECC----CCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC-
Confidence 7899999999988888888999999997 5655554321 12223 89999999988888866 67666542
Q ss_pred CCccccccccceeeEEeeCCCCeEEee--cccCCCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEE----ecC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTN--DIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT----FAN 543 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~----~~~ 543 (701)
++..... .+.......+.+++++ +..|+.+. ++.|+.||..++..... ..+
T Consensus 203 --------------------~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g 262 (409)
T 3hrp_A 203 --------------------SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG 262 (409)
T ss_dssp --------------------GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred --------------------CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence 2211100 0111133456778888 55666666 78999999987753322 222
Q ss_pred CCCCe-E-EEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEeecCCC---------------CCeEEEEEecCCCEEEEE
Q 005342 544 PPPIA-T-YFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------------NRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 544 ~~~~i-~-~l~~spd-g-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------------~~V~~v~~spdg~~l~s~ 604 (701)
..... . .++++|+ + ++++...++.|+.|+.... +..+.++. .....++++|+|+++++-
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 22222 3 9999995 5 6677777889999997643 33333332 347899999999988888
Q ss_pred e-CCCeEEEEECCCCeeeeeeeeeec--cCCCC------CCCCCeEEEEEcCCCCEEEEE-ecCeEEEEEC
Q 005342 605 G-ADAQLCVWDAVGWKKLCSKFLHSF--QTGLV------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 665 (701)
Q Consensus 605 s-~D~~I~vwd~~~g~~~~~~~l~~~--~~~~~------~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~ 665 (701)
+ .+++|+.|++.+|... .+... ..+.. ..-.....++++|+|.++++- .++.|+.+++
T Consensus 341 ~~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 341 GFKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 8 8999999998887532 12100 00000 001457899999998777764 6778887765
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=1.9e-09 Score=110.16 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=139.2
Q ss_pred CCEEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 442 GRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
.-..+..|+|++..++... .++.|..||. .++.... + .....+.+++++ |+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~---------------------~~~~~~~--~--~~~~~~~~i~~~~dG~- 66 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDS---------------------FTKQVQR--V--TMDAPVSSVALRQSGG- 66 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEET---------------------TTCCEEE--E--ECSSCEEEEEEBTTSS-
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEEC---------------------CCCcEEE--E--eCCCceEEEEECCCCC-
Confidence 3456788999766555544 4788888854 4444322 1 134578899998 66
Q ss_pred EEEEeCCeEEEEeCCCCcEEEEecCC----CCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCCceEEee
Q 005342 519 LFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAKL 582 (701)
Q Consensus 519 l~s~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~spdg-~l~~gs~-----------dg~I~iwd~~~~~~~~~l 582 (701)
++++.++.|.+||..+++........ ...+..++++|+| ++++... .+.|+.+|.. ++... +
T Consensus 67 l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 67 YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 55556778999999887654332211 2346889999999 5554322 2355555543 43333 3
Q ss_pred cCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEC--CCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342 583 KGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (701)
Q Consensus 583 ~~h~~~V~~v~~spdg~~l-~s~s~D~~I~vwd~--~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg 658 (701)
..+....+.++|+||++.| ++.+.++.|.+||+ .+|.......+..+..+. .....+++.++|++.++. .++
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE----QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG----CEEEEEEEBTTSCEEEEEETTT
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC----CCCCeeEECCCCCEEEEEcCCC
Confidence 3344457899999999866 45566889999997 566533223333222211 557899999999877775 567
Q ss_pred eEEEEECCCCceeeeeee----eeEEEEE
Q 005342 659 QIDVYEAPTLNHTSQVLL----ISHIMFV 683 (701)
Q Consensus 659 ~I~iwd~~~g~~~~~l~~----i~~~~fs 683 (701)
.|..||..+|+.+..+.. +++++|+
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred EEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 899999999999888765 8889987
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.25 E-value=5.1e-10 Score=129.77 Aligned_cols=229 Identities=13% Similarity=0.009 Sum_probs=147.6
Q ss_pred ceeeeEEEEccC----------CCC--CeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCc-e
Q 005342 329 WWVPYCINVMPN----------ANN--ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQ-S 395 (701)
Q Consensus 329 ~v~~~~l~fspd----------s~d--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~-V 395 (701)
.+. .++|||| +.+ .+|++||+.+|+.+... + +.. +
T Consensus 164 ~~~--~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------~---------------------~~~~~ 211 (741)
T 1yr2_A 164 ALD--AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------L---------------------KWVKF 211 (741)
T ss_dssp EEE--EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE---------E---------------------EEEES
T ss_pred EEE--eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc---------C---------------------CCcee
Confidence 455 8899999 122 57999999998765431 0 011 2
Q ss_pred EEEEEcCCCCeEEEEcCCCc--------------EEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEE
Q 005342 396 RESTSLPDADSAVCAKSLEK--------------SVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALT 460 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~d~~--------------v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s 460 (701)
..++|+|| +.|+.++.++. |++|++. ++.. ..+......+...+..+.|||||++|+..+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg----t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG----TPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT----SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC----CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 46889999 99988876654 8889886 3321 111122223334688999999999998887
Q ss_pred CCC-----cEEEEecCCCCccccccccceeeEEeeCCCC--e-EEeecccCCCCCCeEEEEec-CCEEEEEe-C----Ce
Q 005342 461 QTA-----THKLWKWQSNKQSLEEENVNMESQLYQPSSK--L-VMTNDIAADPKDSISCFALR-GSHLFSAS-G----GK 526 (701)
Q Consensus 461 ~dg-----~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~--~-~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-d----g~ 526 (701)
.++ .+.+||+ .++ . ... +. .+...+....+. |+.|+..+ + +.
T Consensus 287 ~~~~~~~~~l~~~d~---------------------~~~~~~~~~~--l~-~~~~~~~~~~~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 287 SEGTDPVNTVHVARV---------------------TNGKIGPVTA--LI-PDLKAQWDFVDGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp ECTTCSCCEEEEEEE---------------------ETTEECCCEE--EE-CSSSSCEEEEEEETTEEEEEECTTCTTCE
T ss_pred EccCCCcceEEEEEC---------------------CCCCCcccEE--ec-CCCCceEEEEeccCCEEEEEECCCCCCCE
Confidence 644 6777765 333 2 111 21 222333344335 77777665 2 46
Q ss_pred EEEEeCCCC--cEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCceEEeecC-CCCCeEEEEEecCCCEE
Q 005342 527 ISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKKTKAKLKG-HQNRITCLAYSLSLNVL 601 (701)
Q Consensus 527 I~iwd~~~~--~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-~~~~~~~l~~-h~~~V~~v~~spdg~~l 601 (701)
|.+||+.++ .....+..+...+..++++ ++ ++++...|+..++|.+. ++...+.+.. +.+.+..+.++|+++.+
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence 999999875 3344444445556677887 45 88888889876666443 4556666664 35678899999998755
Q ss_pred E-EEe---CCCeEEEEECCCCe
Q 005342 602 V-SSG---ADAQLCVWDAVGWK 619 (701)
Q Consensus 602 ~-s~s---~D~~I~vwd~~~g~ 619 (701)
+ +.+ ..++|++||+.+++
T Consensus 422 ~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCEEEEEECCCCc
Confidence 5 222 35789999999886
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=4.4e-09 Score=107.39 Aligned_cols=217 Identities=9% Similarity=0.035 Sum_probs=141.5
Q ss_pred eEEEEEcCC-CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spd-g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
-.+..|+|+ +..+++...++.|..|+.. ++....+. ....+.+++++|+|++++ +. ++.|.+||.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----~~~~~~~~-----~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~--- 80 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSF----TKQVQRVT-----MDAPVSSVALRQSGGYVA-TI-GTKFCALNW--- 80 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEE-----CSSCEEEEEEBTTSSEEE-EE-TTEEEEEET---
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECC----CCcEEEEe-----CCCceEEEEECCCCCEEE-EE-CCeEEEEEC---
Confidence 457899995 4566677778999999987 55443333 246799999999999544 44 567777754
Q ss_pred CccccccccceeeEEeeCCCCeEEee-cccC-CCCCCeEEEEec--CCEEEEEe-C-----------CeEEEEeCCCCcE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTN-DIAA-DPKDSISCFALR--GSHLFSAS-G-----------GKISIFSLETFQT 537 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~-~~~~~v~~l~~s--~~~l~s~s-d-----------g~I~iwd~~~~~~ 537 (701)
.++++... .... .....+.+++++ |++.++.. + +.|..+|.. ++.
T Consensus 81 ------------------~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~ 141 (297)
T 3g4e_A 81 ------------------KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV 141 (297)
T ss_dssp ------------------TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE
T ss_pred ------------------CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE
Confidence 44442210 0100 122357788888 66555432 2 245555542 333
Q ss_pred EEEecCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeC--CCCce-----EEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 005342 538 LATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCP--CTKKT-----KAKLKGHQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg-~-l~~gs~dg~I~iwd~--~~~~~-----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
.. +.........++|+||+ . +++.+.++.|.+||+ .++.. ...+..+.+.+..++++++|++.++...++
T Consensus 142 ~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 142 KK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred EE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 32 22233456889999999 4 466677889999987 45543 223333445678999999999888888889
Q ss_pred eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEE
Q 005342 609 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS 654 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~s 654 (701)
.|.+||..+|+... .+. .+. ..+++++|. ||++.|++
T Consensus 221 ~v~~~d~~tG~~~~--~i~----~p~---~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQ--TVK----LPV---DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EEEEECTTTCCEEE--EEE----CSS---SBEEEEEEESGGGCEEEE
T ss_pred EEEEEcCCCceEEE--EEE----CCC---CCceEEEEeCCCCCEEEE
Confidence 99999999876432 222 111 568999998 89877665
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=2.7e-10 Score=119.51 Aligned_cols=188 Identities=12% Similarity=0.007 Sum_probs=133.4
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 521 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s 521 (701)
..+..+++++....+++|+.++ +.+|+........ ..... +.... .. . .+.. |+.++|++++|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~-----~~~~~-~~---~--~lp~-V~~l~fd~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDST-----PLTFK-WE---K--EIPD-VIFVCFHGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSC-----CCCCS-EE---E--ECTT-EEEEEEETTEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--ccccc-----cccce-EE---e--eCCC-eeEEEECCCEEEE
Confidence 4689999999999999999875 5559763221000 00000 00100 11 1 2445 9999998888888
Q ss_pred EeCCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEE
Q 005342 522 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 522 ~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l 601 (701)
+.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|||+| +
T Consensus 103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 88899999999877665556666777887776654 48888999999999999887654 44679999999999 6
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeee---eccC--CCCCCCCCeEEEEEcCCCCEEEE
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLH---SFQT--GLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~---~~~~--~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+.|..||++++|+...++......+. .+.. +|. ..|.+|.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 78999999999999887521112221 0111 233 88999999999999987
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=7.7e-10 Score=117.63 Aligned_cols=262 Identities=11% Similarity=0.032 Sum_probs=170.4
Q ss_pred CeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CC
Q 005342 344 ETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SL 413 (701)
Q Consensus 344 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d 413 (701)
++|.+.|..+++.+..+ +. +.. - .++++|||++++.+. .+
T Consensus 99 ~~VsVID~~t~~vv~~I----------~v------------------G~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMT----------DG------------------GFL-P-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp EEEEEEETTTTEEEEEE----------EE------------------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCEEEEEE----------EC------------------CCC-C-ceEECCCCCEEEEEeccccccccCCCC
Confidence 78999999998887763 10 111 2 589999999988876 36
Q ss_pred CcEEEEeccccCCCCcee-EeecCCCC---CCCCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeE
Q 005342 414 EKSVNLKLQLINEPSECR-TLLLPDNS---FGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQ 487 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~-~l~~~~~~---~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~ 487 (701)
+.|.++|.. +.+.. .+.++... .......+.++|||++++++.. ++.|.+.
T Consensus 149 ~~VsviD~~----t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI------------------- 205 (426)
T 3c75_H 149 DYVEVFDPV----TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV------------------- 205 (426)
T ss_dssp EEEEEECTT----TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE-------------------
T ss_pred CEEEEEECC----CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE-------------------
Confidence 789999998 44432 33332000 0123457899999999998874 5778888
Q ss_pred EeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEE----ecCCCCCe-EEEEEcCCC-eE
Q 005342 488 LYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIA-TYFILLPQD-LF 559 (701)
Q Consensus 488 ~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~----~~~~~~~i-~~l~~spdg-~l 559 (701)
|..+++++.. +.-+ ....+.-. ...+++.+ ||.+.+.+..+++.... +.....++ ..+.+++++ .+
T Consensus 206 --D~~t~kvv~~-I~v~---g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 206 --DLEGKTFDRM-LDVP---DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp --ETTTTEEEEE-EECC---SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred --ECCCCeEEEE-EEcC---CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 4466665533 2211 11112222 44555555 88888888866655432 22112222 345789998 66
Q ss_pred EEEeCCCcEEEEeCCCCceE--EeecC----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCC
Q 005342 560 AFGFDDSSILVHCPCTKKTK--AKLKG----------HQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVG 617 (701)
Q Consensus 560 ~~gs~dg~I~iwd~~~~~~~--~~l~~----------h~~~V~~v~~spdg~~l~s~s~----------D~~I~vwd~~~ 617 (701)
+..+..+.+++.|..+.... ..+.- .......++++|+++.++.... ++.|.+.|..+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 66677899999998655421 11110 0112234689999886665432 35799999999
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC-EEEEE--ecCeEEEEECCCCceeeee
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLSI--HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~-~l~sg--~Dg~I~iwd~~~g~~~~~l 674 (701)
++.+....+. ....++.|+|||+ ++++. .++.|.++|..+++.++++
T Consensus 360 ~kvv~~I~vg----------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 360 GERINKIELG----------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCEEEEEEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CeEEEEEECC----------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 8655433333 4578999999999 88875 4899999999999999997
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.20 E-value=4.3e-09 Score=107.89 Aligned_cols=225 Identities=8% Similarity=-0.051 Sum_probs=143.1
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
...+.|+|+|+ +++++..++.|..|+.. +....+.. +...+..++++++|+.+++...++.|.+|+.+
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----g~~~~~~~----~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-- 115 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-----GTVDVLLD----ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-- 115 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-----SCEEEEEE----SCSCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-----CCEEEEeC----CCCccceeeECCCCCEEEEECCCCEEEEECCC--
Confidence 77899999998 66777788999999873 33333332 35678999999999965554456788888642
Q ss_pred CccccccccceeeEEeeCCCCeEEe--ecccCCCCCCeEEEEec--CCEEEE----Ee--------------CCeEEEEe
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMT--NDIAADPKDSISCFALR--GSHLFS----AS--------------GGKISIFS 531 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~l~~s--~~~l~s----~s--------------dg~I~iwd 531 (701)
+.... ..........+.+++++ |++.++ |. .+.|..||
T Consensus 116 --------------------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 116 --------------------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp --------------------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred --------------------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 22110 00000112345678888 666664 32 25688888
Q ss_pred CCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceE--Eee-cCCCCCeEEEEEecCCCEE
Q 005342 532 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTK--AKL-KGHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 532 ~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~d------g~I~iwd~~~~~~~--~~l-~~h~~~V~~v~~spdg~~l 601 (701)
..+++..... .......++|+||+ .++++... +.|++||+..+... ..+ ....+....++++++|++.
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 8766644332 33456789999999 67666554 78999998754311 111 1123445678999999955
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 602 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 602 ~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
++ +.+ .|.+|+.. |+.. ..+. .. ..+.+++|+|+++.|..+..+.+..+++
T Consensus 254 v~-~~~-gv~~~~~~-g~~~--~~~~----~~----~~~~~~~f~~d~~~L~it~~~~l~~~~~ 304 (305)
T 3dr2_A 254 SS-SGT-GVCVFDSD-GQLL--GHIP----TP----GTASNCTFDQAQQRLFITGGPCLWMLPL 304 (305)
T ss_dssp EC-CSS-EEEEECTT-SCEE--EEEE----CS----SCCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred Ee-cCC-cEEEECCC-CCEE--EEEE----CC----CceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence 44 344 59999985 4322 2222 11 3478899999998888876566655543
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=1.9e-08 Score=104.08 Aligned_cols=216 Identities=12% Similarity=0.014 Sum_probs=139.2
Q ss_pred eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
...+.|+|++ ..++++..++.|..|+.. +++...+.. ...+.+++++|+|+++++ +.+ .+.+||.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----~~~~~~~~~-----~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~--- 116 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLA----SGRKTVHAL-----PFMGSALAKISDSKQLIA-SDD-GLFLRDT--- 116 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETT----TTEEEEEEC-----SSCEEEEEEEETTEEEEE-ETT-EEEEEET---
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEC-----CCcceEEEEeCCCeEEEE-ECC-CEEEEEC---
Confidence 4578899974 566677778899999987 555444332 357999999999987665 444 4777754
Q ss_pred CccccccccceeeEEeeCCCCeEEee-cccC-CCCCCeEEEEec--CCEEEEEeC-------CeEEEEeCCCCcEEEEec
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTN-DIAA-DPKDSISCFALR--GSHLFSASG-------GKISIFSLETFQTLATFA 542 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~-~~~~~v~~l~~s--~~~l~s~sd-------g~I~iwd~~~~~~~~~~~ 542 (701)
.++++... .... .....+.+++++ |++.++..+ +.|..+| +++... +.
T Consensus 117 ------------------~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~ 175 (326)
T 2ghs_A 117 ------------------ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF 175 (326)
T ss_dssp ------------------TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE
T ss_pred ------------------CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee
Confidence 44442211 0100 112357888898 665554432 4666677 454332 22
Q ss_pred CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CC-ce-----EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 543 NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPC--TK-KT-----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 543 ~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~~--~~-~~-----~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
........++|+||| .+ ++.+.++.|++||+. ++ .. ...+......+..++++++|++.++...++.|.+
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 233356789999999 55 445567899999986 55 32 2233334456788999999998887777789999
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc-CCCCEEEEE
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-PDQIHLLSI 655 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s-pdg~~l~sg 655 (701)
||. +++.. ..+. .+. ..+++++|+ |+++.|+++
T Consensus 256 ~d~-~g~~~--~~i~----~~~---~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 256 YDT-DGNHI--ARYE----VPG---KQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp ECT-TCCEE--EEEE----CSC---SBEEEEEEESTTSCEEEEE
T ss_pred ECC-CCCEE--EEEE----CCC---CCcEEEEEecCCCCEEEEE
Confidence 998 44422 2222 121 568999998 898777653
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.18 E-value=3.6e-08 Score=103.89 Aligned_cols=249 Identities=10% Similarity=-0.008 Sum_probs=161.1
Q ss_pred EEcCCCCeEEEEcC--CC---cEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC----------CC
Q 005342 399 TSLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA 463 (701)
Q Consensus 399 ~~spdg~~l~s~s~--d~---~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~----------dg 463 (701)
...|++++++.+.. .. .|.++|.. +++... .++.. ..+ .+++||||++++++.. ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~----t~~~~~-~i~~g--~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAG----SGSILG-HVNGG--FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECC----CCeEEE-EecCC--CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 34578887777654 23 78999987 554332 22221 222 8999999999988862 56
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC------CCCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD------PKDSISCFALR--GSHLFSAS---GGKISIFSL 532 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~ 532 (701)
.|.+||. .+.+.+.. +..+ +......++++ |+++++++ ++.|.++|
T Consensus 98 ~v~viD~---------------------~t~~~~~~-i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD- 154 (373)
T 2mad_H 98 YVEVFDP---------------------VTFLPIAD-IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV- 154 (373)
T ss_pred eEEEEEC---------------------CCCcEEEE-EECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-
Confidence 7888865 33332221 1000 01234578888 88888775 37899999
Q ss_pred CCCcEEEE-ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec-----CCCCC-eEEEEEecCCCEEEE
Q 005342 533 ETFQTLAT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNR-ITCLAYSLSLNVLVS 603 (701)
Q Consensus 533 ~~~~~~~~-~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~-V~~v~~spdg~~l~s 603 (701)
.+++.+.. +... . ++.+.|++ .+++.+.||.+.++|. +++.+.... ....+ .....+.+++..++.
T Consensus 155 ~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 155 QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE
Confidence 99998887 6532 1 35566776 6677888999999999 887763322 11122 233466776665554
Q ss_pred EeCCCeEEEEECCCCeeeeeeeeeeccC------CCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECC
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAP 666 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~~~~~------~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~ 666 (701)
.+.++.+.+.|+.++.......+. +.. +..+ .....+.++||++.+++. . ++.|.++|..
T Consensus 230 ~~~~~~v~vid~~~~~~~v~~~~~-~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~ 306 (373)
T 2mad_H 230 PVYSGKILQADISAAGATNKAPID-ALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EcCCceEEEEeccCCcceEeeeee-ecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence 557889999999875322222222 111 1111 334558899999888774 2 2579999999
Q ss_pred CCceeeeeee---eeEEEEEeeEE
Q 005342 667 TLNHTSQVLL---ISHIMFVQIVV 687 (701)
Q Consensus 667 ~g~~~~~l~~---i~~~~fs~~~~ 687 (701)
+++.+++++. ..+++|+|+..
T Consensus 307 t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 307 VGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred CCEEEEEEECCCCcCeEEECCCCC
Confidence 9999999976 88999998854
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.17 E-value=6.3e-09 Score=106.60 Aligned_cols=218 Identities=10% Similarity=-0.023 Sum_probs=144.7
Q ss_pred CCEEEEEEecCCCEEEE-------EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEE
Q 005342 442 GRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCF 512 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s-------~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l 512 (701)
....+++|+++|..+++ ++.++.|.+||. .+++....... .++...+.++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~---------------------~~g~~~~~~~~~~~~~~~~~~~i 76 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDL---------------------KTGKKTVICKPEVNGYGGIPAGC 76 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECT---------------------TTCCEEEEECCEETTEECCEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeC---------------------CCCcEEEEEecccCCCCCCCceE
Confidence 45688999999987666 466788988854 33433211000 1233568889
Q ss_pred Eec-C-CEEEEEe-CCeEEEEeCCCCcEEEE-ecCC----CCCeEEEEEcCCC-eEEEEeCC---------------CcE
Q 005342 513 ALR-G-SHLFSAS-GGKISIFSLETFQTLAT-FANP----PPIATYFILLPQD-LFAFGFDD---------------SSI 568 (701)
Q Consensus 513 ~~s-~-~~l~s~s-dg~I~iwd~~~~~~~~~-~~~~----~~~i~~l~~spdg-~l~~gs~d---------------g~I 568 (701)
+++ . ..+..++ ++.|.+||.. ++.... .... ...+.+++++++| ++++...+ +.|
T Consensus 77 ~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 77 QCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 998 5 6666666 6689999997 665433 2211 2347899999999 66665554 578
Q ss_pred EEEeCCCCceEEeecCCCCCeEEEEEe----cCCCEEE-EEeCCCeEEEEECC-CCeeeeeeeeeeccCCCCCCCCCeEE
Q 005342 569 LVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLV-SSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH 642 (701)
Q Consensus 569 ~iwd~~~~~~~~~l~~h~~~V~~v~~s----pdg~~l~-s~s~D~~I~vwd~~-~g~~~~~~~l~~~~~~~~~~~~~v~~ 642 (701)
+.||.. ++..... .+......++|+ |+++.++ +.+.++.|++||.. ++.......+..+..+.. ..+..
T Consensus 156 ~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~ 230 (314)
T 1pjx_A 156 YCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADG 230 (314)
T ss_dssp EEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEE
T ss_pred EEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC---CCCCc
Confidence 888876 5544332 334457899999 9997554 44568999999987 454322222332222210 34678
Q ss_pred EEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee----eeEEEEEeeE
Q 005342 643 IQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL----ISHIMFVQIV 686 (701)
Q Consensus 643 v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~----i~~~~fs~~~ 686 (701)
++++++|++.++. .++.|.+||..+++.+..+.. +.+++|+|+.
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence 9999999988875 688999999987887666543 8888887653
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=5e-10 Score=117.47 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=121.1
Q ss_pred CeEEEEec--CCEEEEEeCCeEEEEeCCCCc-----------EEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 005342 508 SISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 573 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~-----------~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~ 573 (701)
.+..++++ ...+++|+...+.+|+++... ...... +.. |+.++| |+ .++++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 68889998 778888885567779865433 112333 455 999999 77 88888 8899999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 574 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 574 ~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
++.........|...+.++.+.+. -+++++.||.+.+||++++... .+. ..|++++|||+| ++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ--LA 176 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE--EE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc--eE
Confidence 887766666678888988877654 3888999999999999987532 233 779999999999 44
Q ss_pred EE-ecCeEEEEECCCCce--eeee------e----e---eeEEEEEeeEEee
Q 005342 654 SI-HEGQIDVYEAPTLNH--TSQV------L----L---ISHIMFVQIVVKF 689 (701)
Q Consensus 654 sg-~Dg~I~iwd~~~g~~--~~~l------~----~---i~~~~fs~~~~~f 689 (701)
.| .||++++|+..+++. .+++ . . |.+++|.+....+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 54 899999999988775 5666 1 1 8888887654433
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=5.5e-08 Score=100.65 Aligned_cols=180 Identities=8% Similarity=0.037 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-CCCCCCEEEEEEecCCCEEEEEECC----CcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd 469 (701)
+.+++|+|+|+++++. . ..|.+||.. +++...+.... ......+.+++++|+|+.+++...+ +...+|.
T Consensus 92 v~~i~~~~dg~l~v~~-~-~gl~~~d~~----~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS-D-DGLFLRDTA----TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp EEEEEEEETTEEEEEE-T-TEEEEEETT----TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred ceEEEEeCCCeEEEEE-C-CCEEEEECC----CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 7889999999988765 3 348999986 55544433111 1123468899999999966554322 2344553
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC--CC-c-----E
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE--TF-Q-----T 537 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~--~~-~-----~ 537 (701)
+ + +++... +. ........++|+ |+.++.+. ++.|.+||+. ++ . .
T Consensus 166 ~-------------------~--~g~~~~--~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~ 221 (326)
T 2ghs_A 166 V-------------------A--KGKVTK--LF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV 221 (326)
T ss_dssp E-------------------E--TTEEEE--EE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred E-------------------e--CCcEEE--ee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence 3 4 333221 10 122346788998 66665554 6899999986 55 3 1
Q ss_pred EEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEe-cCCCEEEEEe
Q 005342 538 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSG 605 (701)
Q Consensus 538 ~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s-pdg~~l~s~s 605 (701)
...+.........++++++| +.++...++.|.+||. +++.+..+..+...+++++|+ |+++.|+.++
T Consensus 222 ~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 222 FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 22333334456889999999 6666667789999998 677777777676779999998 8887665443
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.10 E-value=1.6e-08 Score=105.65 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=162.4
Q ss_pred EEEcCCCCeEEEEcC-----CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE----------CC
Q 005342 398 STSLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT 462 (701)
Q Consensus 398 l~~spdg~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s----------~d 462 (701)
....|+++.++.... ++.|.+.|.. +++... .++. ...+ .++++|||+++++++ .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----t~~v~~-~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE----AGRVIG-MIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT----TTEEEE-EEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC----CCeEEE-EEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 345789998887765 5789999987 444332 1111 1223 399999999888776 25
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC-----CCCCeEEEEec--CCEEEEEe---CCeEEEEeC
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSL 532 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~ 532 (701)
+.|.+|| ..+++.+....... .......++++ |++++++. ++.|.++|+
T Consensus 109 ~~VsviD---------------------~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 109 DYVEVFD---------------------PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEEEEC---------------------TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CEEEEEE---------------------CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 6788874 45555443211011 01245578888 88877764 489999999
Q ss_pred CCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEeecCC----CCCe-EEEEEe-cCCCEEEE
Q 005342 533 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRI-TCLAYS-LSLNVLVS 603 (701)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~~~~l~~h----~~~V-~~v~~s-pdg~~l~s 603 (701)
.+++.+.++.... +..+.|.| .+++.+.||++.+.++.+ ++.......+ ..++ ....|. ++|++++
T Consensus 168 ~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 168 EGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred CCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 9999999886432 12233544 677888899999999876 5543322111 1222 224665 5776544
Q ss_pred EeCCCeEEEEECCCCeeeeeeeee-----eccCCCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCC
Q 005342 604 SGADAQLCVWDAVGWKKLCSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPT 667 (701)
Q Consensus 604 ~s~D~~I~vwd~~~g~~~~~~~l~-----~~~~~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~ 667 (701)
.+.+|+|++.|..++.......+. .+..+-.+ .....++++|+++.+++. . .+.|.+.|+.+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 666899999999876422222221 01111111 333457779999888874 3 25699999999
Q ss_pred Cceeeeeee---eeEEEEEeeE
Q 005342 668 LNHTSQVLL---ISHIMFVQIV 686 (701)
Q Consensus 668 g~~~~~l~~---i~~~~fs~~~ 686 (701)
++.++.++. +.+++||++.
T Consensus 321 ~kv~~~i~vg~~~~~lavs~D~ 342 (386)
T 3sjl_D 321 GERLAKFEMGHEIDSINVSQDE 342 (386)
T ss_dssp CCEEEEEEEEEEECEEEECSSS
T ss_pred CeEEEEEECCCCcceEEECCCC
Confidence 999999987 8899999885
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=6.4e-08 Score=103.45 Aligned_cols=227 Identities=6% Similarity=0.014 Sum_probs=148.2
Q ss_pred ceeeeEEEEccC-------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEc
Q 005342 329 WWVPYCINVMPN-------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSL 401 (701)
Q Consensus 329 ~v~~~~l~fspd-------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~s 401 (701)
.+. .++|+|+ ..++.|++||..++...... . ...... ++|+
T Consensus 132 ~P~--~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------~-------------------~~~~~~-ia~~ 179 (409)
T 3hrp_A 132 YMW--GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------P-------------------GFKGGK-PAVT 179 (409)
T ss_dssp CEE--EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE----------E-------------------TCCBCB-CEEC
T ss_pred Cce--EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee----------c-------------------cCCCCc-eeEe
Confidence 455 8889887 56688999998877655441 0 111123 8899
Q ss_pred CCCCeEEEEcCCC--cEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCcccc
Q 005342 402 PDADSAVCAKSLE--KSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 478 (701)
Q Consensus 402 pdg~~l~s~s~d~--~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g 478 (701)
|+++.|+.+..++ .|..|+.. .+.. ..+..........+.+++++|++..|+++..++.|..||..+
T Consensus 180 ~~g~~l~~~d~~~~~~I~~~d~~----~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~------ 249 (409)
T 3hrp_A 180 KDKQRVYSIGWEGTHTVYVYMKA----SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT------ 249 (409)
T ss_dssp TTSSEEEEEBSSTTCEEEEEEGG----GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT------
T ss_pred cCCCcEEEEecCCCceEEEEEcC----CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC------
Confidence 9999999888766 68888875 2221 222100011345678899999555566677788888886532
Q ss_pred ccccceeeEEeeCCCCeEEee-cc-cCCCCCCe--EEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCC-----
Q 005342 479 EENVNMESQLYQPSSKLVMTN-DI-AADPKDSI--SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPP----- 545 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~~~v--~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~----- 545 (701)
+..... .. ..++...- ..++++ +..|+.+. ++.|+.||.... +..+.++.
T Consensus 250 ---------------~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 250 ---------------QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTV 312 (409)
T ss_dssp ---------------CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSC
T ss_pred ---------------CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCc
Confidence 221110 00 11111212 288888 45665555 689999998543 33333221
Q ss_pred ----------CCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEeecCC---------------CCCeEEEEEecCC
Q 005342 546 ----------PIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH---------------QNRITCLAYSLSL 598 (701)
Q Consensus 546 ----------~~i~~l~~spdg-~l~~gs-~dg~I~iwd~~~~~~~~~l~~h---------------~~~V~~v~~spdg 598 (701)
.....++++|+| ++++-+ .++.|+.||+.++.. .++.++ -.....++++|+|
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 346899999999 778877 889999999877764 444444 2357899999999
Q ss_pred CEEEEEeCCCeEEEEEC
Q 005342 599 NVLVSSGADAQLCVWDA 615 (701)
Q Consensus 599 ~~l~s~s~D~~I~vwd~ 615 (701)
.++++...+++|+.+++
T Consensus 392 ~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEESTTCEEEEEEE
T ss_pred CEEEEECCCCeEEEEEe
Confidence 88888888889988775
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.07 E-value=8.9e-09 Score=118.25 Aligned_cols=233 Identities=9% Similarity=-0.002 Sum_probs=143.6
Q ss_pred cCcceeeeEEEEccC------------CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCC
Q 005342 326 IMDWWVPYCINVMPN------------ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 393 (701)
Q Consensus 326 h~~~v~~~~l~fspd------------s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~ 393 (701)
|...+. .++|||| +...+|++||+.+|+.+... +.+.
T Consensus 127 ~~~~l~--~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------~~~~-------------------- 175 (693)
T 3iuj_A 127 GTTALD--QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------LKDV-------------------- 175 (693)
T ss_dssp SCCEEE--EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------EEEE--------------------
T ss_pred CcEEEE--EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc---------cCCc--------------------
Confidence 334455 7788888 23368999999998865431 1110
Q ss_pred ceEEEEEcCCCCeEEEEcCCCc-------------EEEEeccccCCCCcee-EeecCCCC-CCCCEEEEEEecCCCEEEE
Q 005342 394 QSRESTSLPDADSAVCAKSLEK-------------SVNLKLQLINEPSECR-TLLLPDNS-FGGRVVRLIYSHSGDFLVA 458 (701)
Q Consensus 394 ~V~~l~~spdg~~l~s~s~d~~-------------v~iw~~~~~~~~~~~~-~l~~~~~~-~~~~v~~l~~spdg~~l~s 458 (701)
....++|+ ||+.|+.++.+.. |++|++. +++.. .+...... +......+.|||||++|+.
T Consensus 176 k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg----t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~ 250 (693)
T 3iuj_A 176 KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG----TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLI 250 (693)
T ss_dssp ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT----SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEE
T ss_pred eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC----CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEE
Confidence 02357899 9999999887743 8999986 32211 11112223 3455788999999998865
Q ss_pred EEC----CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe--C---CeEE
Q 005342 459 LTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G---GKIS 528 (701)
Q Consensus 459 ~s~----dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s--d---g~I~ 528 (701)
... ++.+.++|+.++ .+.... + ..+.........+ |+.++..+ + +.|.
T Consensus 251 ~~~~~~~~~~i~~~d~~~~-------------------~~~~~~--l-~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 251 SAANSTSGNRLYVKDLSQE-------------------NAPLLT--V-QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp EEESSSSCCEEEEEETTST-------------------TCCCEE--E-ECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred EEccCCCCcEEEEEECCCC-------------------CCceEE--E-eCCCCceEEEEeccCCEEEEEECCCCCCCEEE
Confidence 543 246777765321 112211 1 1233344443223 66554443 3 6899
Q ss_pred EEeCCCCcE--EEEecCCCCCeEEEEEcCCC-eEEEE-eCCC--cEEEEeCCCCceEEeec-CCCCCeEEEEEecCCCEE
Q 005342 529 IFSLETFQT--LATFANPPPIATYFILLPQD-LFAFG-FDDS--SILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVL 601 (701)
Q Consensus 529 iwd~~~~~~--~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg--~I~iwd~~~~~~~~~l~-~h~~~V~~v~~spdg~~l 601 (701)
.+|+.++.. .+.+..+...+. .|++++ .|+.. ..++ .|++||+..+. ...+. .+.+.+..+.++|+++.+
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l 385 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPAL 385 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCE
T ss_pred EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEE
Confidence 999987654 345555655554 889998 55544 4454 78999987554 44443 244567778888888766
Q ss_pred EEEeCC----CeEEEEECCCCe
Q 005342 602 VSSGAD----AQLCVWDAVGWK 619 (701)
Q Consensus 602 ~s~s~D----~~I~vwd~~~g~ 619 (701)
+....+ ++|+.||+.+++
T Consensus 386 ~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 386 YFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECSSSCCEEEEECTTTCC
T ss_pred EEEecCCCCCCEEEEEECCCCe
Confidence 544433 799999998875
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=3.5e-09 Score=110.72 Aligned_cols=255 Identities=14% Similarity=-0.024 Sum_probs=157.7
Q ss_pred eEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc----------CCC
Q 005342 345 TISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK----------SLE 414 (701)
Q Consensus 345 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s----------~d~ 414 (701)
+|.+.|..+++.+..+ +. +... .+.++|||++++.+. .++
T Consensus 47 ~vsvID~~t~~v~~~i----------~v------------------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~ 96 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS----------LG------------------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp EEEEEETTTTEEEEEE----------EE------------------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred eEEEEECCCCeEEEEE----------eC------------------CCCC--ceEECCCCCEEEEEcccccccccCCCCC
Confidence 8889999998887773 11 1112 589999999999886 368
Q ss_pred cEEEEeccccCCCCce-eEeecCCCCC---CCCEEEEEEecCCCEEEEEEC--CCcEEE--EecCCCCccccccccceee
Q 005342 415 KSVNLKLQLINEPSEC-RTLLLPDNSF---GGRVVRLIYSHSGDFLVALTQ--TATHKL--WKWQSNKQSLEEENVNMES 486 (701)
Q Consensus 415 ~v~iw~~~~~~~~~~~-~~l~~~~~~~---~~~v~~l~~spdg~~l~s~s~--dg~i~v--wd~~~~~~~~g~~~~~~~i 486 (701)
.|.+||+. +++. ..+.++.... ......++++|||++++++.. ++.+.+ +|.
T Consensus 97 ~VsviD~~----T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~---------------- 156 (368)
T 1mda_H 97 YVEVFDPV----TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA---------------- 156 (368)
T ss_dssp EEEEECTT----TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----------------
T ss_pred EEEEEECC----CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch----------------
Confidence 89999998 4443 2332320000 123457899999999998875 356777 654
Q ss_pred EEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCC-----CcEEEE----ecCCCCCeEEEEEcC
Q 005342 487 QLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLET-----FQTLAT----FANPPPIATYFILLP 555 (701)
Q Consensus 487 ~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~-----~~~~~~----~~~~~~~i~~l~~sp 555 (701)
.+ +.. +..+. .+ .+... ...+++.+ ||.+.+.|+.+ ++.... +.....+. . ++
T Consensus 157 -----~t---v~~-i~v~~--~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~ 220 (368)
T 1mda_H 157 -----SD---DQL-TKSAS--CF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN 220 (368)
T ss_dssp -----EE---EEE-EECSS--CC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET
T ss_pred -----hh---ceE-EECCC--ce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc
Confidence 33 110 11111 11 12223 34444445 88888889876 433211 11112232 3 66
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCc--eEEeecC----------CCCCeEEEEEecCCCEEEEEeC---------CCeEEEE
Q 005342 556 QD-LFAFGFDDSSILVHCPCTKK--TKAKLKG----------HQNRITCLAYSLSLNVLVSSGA---------DAQLCVW 613 (701)
Q Consensus 556 dg-~l~~gs~dg~I~iwd~~~~~--~~~~l~~----------h~~~V~~v~~spdg~~l~s~s~---------D~~I~vw 613 (701)
++ .++..+. +.+.+.|..+.. .+..+.- .......++++||++.++.+.. ++.+.++
T Consensus 221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 66 5555555 999999986542 3333321 0112223689999987765432 2356699
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE-EEE--ecCeEEEEECCCCceeeeeee
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI--HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l-~sg--~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|+.+++.+...++. ....+++|+|||+.+ ++. .+++|.++|+.+++.+++++.
T Consensus 300 D~~t~~vv~~i~vg----------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 300 TASVGQTSGPISNG----------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp ESSSCCEEECCEEE----------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred ECCCCeEEEEEECC----------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 99997644332222 457899999999854 444 389999999999999999875
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=4.2e-08 Score=102.30 Aligned_cols=236 Identities=9% Similarity=0.011 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEee---cCCCCCCCCEEEEEEecCCCEEEEEEC-----CCc
Q 005342 395 SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TAT 464 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~---~~~~~~~~~v~~l~~spdg~~l~s~s~-----dg~ 464 (701)
+..++++|+|+.+++.. .++.+++|.+. .++...+. .....+...+.+++++++|+.+++-.. ++.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~----~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELT----QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEE----TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEEC----CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 78899999999999864 23436677765 33333211 011234568999999999885554433 467
Q ss_pred EEEEecCCCCccccccccceeeEEeeCCCCeEEee-ccc---CCCCCCeEEEEec--CCEEEEE-----eCCeEEEEeCC
Q 005342 465 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIA---ADPKDSISCFALR--GSHLFSA-----SGGKISIFSLE 533 (701)
Q Consensus 465 i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~---~~~~~~v~~l~~s--~~~l~s~-----sdg~I~iwd~~ 533 (701)
|.+||+ .+++++.. .+. ..+...+..++++ +..++.+ .++.|.+||..
T Consensus 95 i~~~d~---------------------~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 95 LVAWDT---------------------LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp EEEEET---------------------TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred EEEEEC---------------------CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 777754 55553221 111 0123456788888 4454433 24789999998
Q ss_pred CCcEEEEecCCC-----------------------------CCeEEEEEcCCC-eEEEEeCCC-cEEEEeCC---CCc--
Q 005342 534 TFQTLATFANPP-----------------------------PIATYFILLPQD-LFAFGFDDS-SILVHCPC---TKK-- 577 (701)
Q Consensus 534 ~~~~~~~~~~~~-----------------------------~~i~~l~~spdg-~l~~gs~dg-~I~iwd~~---~~~-- 577 (701)
+++..+.+.+|. ..+..++++||| .++++..++ .++.++.. .+.
T Consensus 154 ~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 154 TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 887766654321 235789999999 777776665 56665532 111
Q ss_pred ---eEE--eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 578 ---TKA--KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 578 ---~~~--~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
... ...++.+....++++++|++.++...++.|.+||..+|+. ..+.... +. ....+++|.++|+++
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~---~~~~~~~--~~---~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY---KLLVTDE--KL---SWTDSFNFGSDGYLY 305 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE---EEEEECG--GG---SCEEEEEECTTSCEE
T ss_pred hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE---EEEEECC--ce---ecCCeeEECCCCcEE
Confidence 000 1123445567899999999999999999999999966642 1222111 11 568999999999887
Q ss_pred EEE-ecCeEEEE
Q 005342 653 LSI-HEGQIDVY 663 (701)
Q Consensus 653 ~sg-~Dg~I~iw 663 (701)
+++ ..+.+.+|
T Consensus 306 v~~~~~~~~~~f 317 (343)
T 2qe8_A 306 FDCNQLHHSAPL 317 (343)
T ss_dssp EEECCGGGSGGG
T ss_pred EEeCcccccccc
Confidence 775 33333333
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.01 E-value=2.1e-08 Score=106.58 Aligned_cols=248 Identities=14% Similarity=0.092 Sum_probs=159.5
Q ss_pred CCCCeEEEEcC-C----CcEEEEeccccCCCCceeE-eecCCCCCCCCEEEEEEecCCCEEEEEEC----------CCcE
Q 005342 402 PDADSAVCAKS-L----EKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 465 (701)
Q Consensus 402 pdg~~l~s~s~-d----~~v~iw~~~~~~~~~~~~~-l~~~~~~~~~~v~~l~~spdg~~l~s~s~----------dg~i 465 (701)
|+++.++.+.. + +.|.+.|.. +.+... +.. . ..+ .++++|||++++++.. ++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~----t~~vv~~I~v--G--~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS----TGRILGMTDG--G--FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT----TTEEEEEEEE--C--SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC----CCEEEEEEEC--C--CCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 56666555543 2 689999997 444332 222 1 233 8999999998888763 5677
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccC--C---CCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCC
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETF 535 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~ 535 (701)
.++ |..+++.+...... . .......++++ |++++++. ++.|.++|+.++
T Consensus 152 svi---------------------D~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 152 EVF---------------------DPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEE---------------------CTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEE---------------------ECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 777 44555544321101 0 01234567888 88888775 478999999999
Q ss_pred cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe----ecCCCCCe-EEEEEecCCCEEEEEeCCC
Q 005342 536 QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 536 ~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~----l~~h~~~V-~~v~~spdg~~l~s~s~D~ 608 (701)
+.+.++.... +....|++ .+++.+.||++.+.+..+++.... +.....++ ..+.+++++..++..+..+
T Consensus 211 kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g 286 (426)
T 3c75_H 211 TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG 286 (426)
T ss_dssp EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS
T ss_pred eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC
Confidence 9988887422 13455655 566677888888888766655422 22112221 2357899988877778889
Q ss_pred eEEEEECCCCeeeeeeeeeecc------CCCCCCCCCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCCCcee
Q 005342 609 QLCVWDAVGWKKLCSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHT 671 (701)
Q Consensus 609 ~I~vwd~~~g~~~~~~~l~~~~------~~~~~~~~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~g~~~ 671 (701)
+|.+.|..++.......+. +. .+..+ .....++++||++.+++. . ++.|.++|..+++.+
T Consensus 287 ~V~ViD~~~~~~~v~~~~~-~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv 363 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIE-ALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI 363 (426)
T ss_dssp EEEEEEECSSCEEECCCEE-SSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred cEEEEeccCCceEEeeeee-ecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence 9999999775422111111 11 01100 222246899999887764 2 347999999999999
Q ss_pred eeeee---eeEEEEEeeEE
Q 005342 672 SQVLL---ISHIMFVQIVV 687 (701)
Q Consensus 672 ~~l~~---i~~~~fs~~~~ 687 (701)
++++. ..+++|+|+..
T Consensus 364 ~~I~vg~~P~gia~spDg~ 382 (426)
T 3c75_H 364 NKIELGHEIDSINVSQDAE 382 (426)
T ss_dssp EEEEEEEEECEEEECCSSS
T ss_pred EEEECCCCcCeEEEccCCC
Confidence 99986 88899998743
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.97 E-value=1.2e-07 Score=97.06 Aligned_cols=209 Identities=11% Similarity=-0.008 Sum_probs=136.0
Q ss_pred CCCEEEEEEecCCCEE-EEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CC
Q 005342 441 GGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 517 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~ 517 (701)
........|+|+|+.| ++...++.|..|+. ++.... + ..+...+..++++ |+
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~----------------------~g~~~~--~-~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE----------------------DGTVDV--L-LDATAFTNGNAVDAQQR 98 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET----------------------TSCEEE--E-EESCSCEEEEEECTTSC
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC----------------------CCCEEE--E-eCCCCccceeeECCCCC
Confidence 4556789999999955 44445788888843 222211 1 1234568889998 66
Q ss_pred EEEEEe-CCeEEEEeCCCCcEEEEec---CC-CCCeEEEEEcCCC-eEEE----EeC-------------CCcEEEEeCC
Q 005342 518 HLFSAS-GGKISIFSLETFQTLATFA---NP-PPIATYFILLPQD-LFAF----GFD-------------DSSILVHCPC 574 (701)
Q Consensus 518 ~l~s~s-dg~I~iwd~~~~~~~~~~~---~~-~~~i~~l~~spdg-~l~~----gs~-------------dg~I~iwd~~ 574 (701)
++++.. ++.|.+||.. ++...... +. ...+..++++|+| +.++ |+. .+.|+.||..
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 554444 5899999985 55322211 11 1345789999999 6665 332 3578889987
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 575 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 575 ~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
+++..... .....+.++|+||++.|+.+... +.|++|++..+.......+... .. .....+++.++
T Consensus 178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~---~~---~~pdgi~~d~~ 249 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV---PD---GLPDGFCVDRG 249 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC---SS---SCCCSEEECTT
T ss_pred CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC---CC---CCCCeEEECCC
Confidence 77654433 33457889999999977776655 7899999987542111222211 11 44567899999
Q ss_pred CCEEEEEecCeEEEEECCCCceeeeeee---eeEEEEEee
Q 005342 649 QIHLLSIHEGQIDVYEAPTLNHTSQVLL---ISHIMFVQI 685 (701)
Q Consensus 649 g~~l~sg~Dg~I~iwd~~~g~~~~~l~~---i~~~~fs~~ 685 (701)
|++.++. .+.|.+|+. +|+.+..+.. +++++|+|.
T Consensus 250 G~lwv~~-~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d 287 (305)
T 3dr2_A 250 GWLWSSS-GTGVCVFDS-DGQLLGHIPTPGTASNCTFDQA 287 (305)
T ss_dssp SCEEECC-SSEEEEECT-TSCEEEEEECSSCCCEEEECTT
T ss_pred CCEEEec-CCcEEEECC-CCCEEEEEECCCceeEEEEeCC
Confidence 9955544 445999998 6777777765 788888753
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=1.9e-07 Score=96.19 Aligned_cols=279 Identities=8% Similarity=-0.062 Sum_probs=170.4
Q ss_pred CcccccccCccceeEEEeecCcceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGD 381 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D 381 (701)
+.|..+| .+++.+.....+...+. ++...++ +.++ +..+|. +|+.+.. +.....
T Consensus 40 ~~l~~~d-~~g~~~~~~~~~~~~~~--~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~----------~~~~~~------ 98 (330)
T 3hxj_A 40 KNLYAIN-TDGSVKWFFKSGEIIEC--RPSIGKDGTIYFGSDK-VYAINP-DGTEKWR----------FDTKKA------ 98 (330)
T ss_dssp TTTEEEC-TTSCEEESSCGGGEEEE--CCEETTTTEECCSSCE-EEEECC-CGGGGGG----------SCC---------
T ss_pred CEEEEEC-CCCcEEEEEecCCCccc--ceEEecCCcEEEecCc-EEEECC-CCcEEEE----------EECCCC------
Confidence 4566777 77776655444434444 5555544 4444 777775 5544433 111100
Q ss_pred CCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC
Q 005342 382 DSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 461 (701)
Q Consensus 382 ~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~ 461 (701)
......+. +..+..++.++.+..+|.. ....+.... +...+.++...++|. +..++.
T Consensus 99 ------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~----g~~~~~~~~----~~~~~~~~~~~~~g~-l~vgt~ 155 (330)
T 3hxj_A 99 ------------IVSDFTIF--EDILYVTSMDGHLYAINTD----GTEKWRFKT----KKAIYATPIVSEDGT-IYVGSN 155 (330)
T ss_dssp --------------CCEEEE--TTEEEEECTTSEEEEECTT----SCEEEEEEC----SSCCCSCCEECTTSC-EEEECT
T ss_pred ------------cccCceEE--CCEEEEEecCCEEEEEcCC----CCEEEEEcC----CCceeeeeEEcCCCE-EEEEcC
Confidence 01122233 4567778888889998875 223333222 233455566677777 566777
Q ss_pred CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEE
Q 005342 462 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLAT 540 (701)
Q Consensus 462 dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~ 540 (701)
++.+..+|. . +..... + ......+.++... +..+..++ +.+..+| .+++....
T Consensus 156 ~~~l~~~d~---------------------~-g~~~~~-~-~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~ 209 (330)
T 3hxj_A 156 DNYLYAINP---------------------D-GTEKWR-F-KTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWN 209 (330)
T ss_dssp TSEEEEECT---------------------T-SCEEEE-E-ECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEE
T ss_pred CCEEEEECC---------------------C-CCEeEE-E-ecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEE
Confidence 888888854 3 332211 1 1123345566675 44455556 8899999 78888777
Q ss_pred ecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 541 FANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
+......+.++..+++|.+.+++.++.+..+|. +++.+..+......+.++...+++. |..++.++.|..+|. +|+.
T Consensus 210 ~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp ECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCE
T ss_pred EccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcE
Confidence 776666788899998886666788889999984 5666666654444455566666665 556788889999996 5653
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCC
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~ 667 (701)
.... . + .. ..+.++...++|++.+.+.+|.+++...+.
T Consensus 287 ~~~~--~-~--~~----~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 287 KWNF--E-T--GS----WIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp EEEE--E-C--SS----CCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred EEEE--E-c--CC----ccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 3222 1 1 11 456677788899877777899998887643
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=2.3e-07 Score=96.67 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=139.0
Q ss_pred CCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee----cccCCCCCCeEEEEec
Q 005342 442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN----DIAADPKDSISCFALR 515 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~v~~l~~s 515 (701)
..+..++++|+|+.+++... ++.+.+|.+. ++.+... .....+...+..++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~---------------------~g~~~~~p~~~~~~~~~~~~p~gv~~d 75 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT---------------------QDGLIPFPPQSGNAIITFDTVLGIKSD 75 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE---------------------TTEEEESCCCCSSCCCCCSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC---------------------CCCeecCCCcccCcccceeEeeEEEEc
Confidence 57889999999998887642 3435666552 2222210 0012345678999999
Q ss_pred -CCEEEEEe-------CCeEEEEeCCCCcEEEEecCC------CCCeEEEEEcCCC--eEEEEe---CCCcEEEEeCCCC
Q 005342 516 -GSHLFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTK 576 (701)
Q Consensus 516 -~~~l~s~s-------dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~spdg--~l~~gs---~dg~I~iwd~~~~ 576 (701)
...|.... ++.|.+||+.+++.+..+..+ ...+..++++|++ .+++.+ .++.|.+||..++
T Consensus 76 ~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 76 GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 44454443 379999999999877766532 2346899999865 445555 6789999999988
Q ss_pred ceEEeecCCC-----------------------------CCeEEEEEecCCCEEEEEeCCC-eEEEEECC---CCeeeee
Q 005342 577 KTKAKLKGHQ-----------------------------NRITCLAYSLSLNVLVSSGADA-QLCVWDAV---GWKKLCS 623 (701)
Q Consensus 577 ~~~~~l~~h~-----------------------------~~V~~v~~spdg~~l~s~s~D~-~I~vwd~~---~g~~~~~ 623 (701)
+..+.+.+|. ..++.++|+|||+.|+.+..++ .++.++.. .+.....
T Consensus 156 ~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 156 LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 7776664431 2368899999999888877665 55555532 1100000
Q ss_pred ---eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee---e--eeEEEEEee
Q 005342 624 ---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL---L--ISHIMFVQI 685 (701)
Q Consensus 624 ---~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~---~--i~~~~fs~~ 685 (701)
..+. .. ++. .....++++++|.++++. .++.|.+||..+|+...... . .++++|++.
T Consensus 236 ~~~~~~~-~~-g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 236 ELGSKIE-RY-SEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp HHHTTCE-EE-EEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred hhhcceE-ec-ccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 0000 00 111 345678999999988886 78899999986676433221 1 677777653
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=1.6e-07 Score=107.01 Aligned_cols=308 Identities=10% Similarity=0.032 Sum_probs=176.3
Q ss_pred CcccccccCccceeEEEeecCcc---------eeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDW---------WVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEG 372 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~---------v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 372 (701)
+.|.-+|..+|+.+...+..... +....+++..+ +.|+.+..+|..+|+.+-.. ..
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~----------~~ 156 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ----------NT 156 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE----------ET
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee----------cC
Confidence 55667788899988887654321 01012333333 67899999999999876652 11
Q ss_pred C-CcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC------CCcEEEEeccccCCCCc-eeEeecCCCC-----
Q 005342 373 R-PLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS------LEKSVNLKLQLINEPSE-CRTLLLPDNS----- 439 (701)
Q Consensus 373 ~-~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~------d~~v~iw~~~~~~~~~~-~~~l~~~~~~----- 439 (701)
. .. . .+......... .+ ..++.++. ++.|..+|.. +++ .+.+......
T Consensus 157 ~~~~----------~---~~~~~~~~p~v-~~-~~v~v~~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 157 FEGQ----------K---GSLTITGAPRV-FK-GKVIIGNGGAEYGVRGYITAYDAE----TGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp TTTC----------C---SSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCC
T ss_pred CcCc----------C---cCcccccCcEE-EC-CEEEEEecccccCCCCEEEEEECC----CCcEEEEeccCCCCccccc
Confidence 1 00 0 00000000111 13 34444432 6889999987 444 3333321100
Q ss_pred -----------------------CCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE
Q 005342 440 -----------------------FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV 496 (701)
Q Consensus 440 -----------------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~ 496 (701)
.......++++|++..++.++.++.. |.........|......++..+|..+|+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~~~gd~~~~~sv~AlD~~TG~~ 295 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSPKGGDNLYLASIVALDPDTGKY 295 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCCccCCCCeeeEEEEEEECCCCCE
Confidence 01111357888998888888776543 42211000012222222455667788875
Q ss_pred EeecccCCCC-------CCeEEEEe--cC---CEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-----------e----
Q 005342 497 MTNDIAADPK-------DSISCFAL--RG---SHLFSAS-GGKISIFSLETFQTLATFANPPPI-----------A---- 548 (701)
Q Consensus 497 ~~~~~~~~~~-------~~v~~l~~--s~---~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~-----------i---- 548 (701)
.-..-...|. .....+.. .| ..++.++ +|.++++|..+|+.+..+...... +
T Consensus 296 ~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~ 375 (677)
T 1kb0_A 296 KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAA 375 (677)
T ss_dssp EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGG
T ss_pred EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccc
Confidence 4221101121 11222222 25 5778888 899999999999988766422100 0
Q ss_pred --------------------EEEEEcCCC-eEEEEeC-------------------------------------------
Q 005342 549 --------------------TYFILLPQD-LFAFGFD------------------------------------------- 564 (701)
Q Consensus 549 --------------------~~l~~spdg-~l~~gs~------------------------------------------- 564 (701)
..++++|++ .++++..
T Consensus 376 ~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 455 (677)
T 1kb0_A 376 ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP 455 (677)
T ss_dssp GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred cCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence 257889988 6666543
Q ss_pred CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644 (701)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~ 644 (701)
.|.|..||+.+++.+-.+. +..++....+..++..++.++.|+.+++||.++|+.+....+ ++. ....-+.
T Consensus 456 ~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-----~~~---~~~~p~~ 526 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-----GTG---VVAAPST 526 (677)
T ss_dssp EEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC---CCSCCEE
T ss_pred ccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-----CCC---cccCCEE
Confidence 2789999999999887776 344555666777888888899999999999999975543322 221 2233456
Q ss_pred EcCCCCEEEE
Q 005342 645 FHPDQIHLLS 654 (701)
Q Consensus 645 ~spdg~~l~s 654 (701)
|.++|+..++
T Consensus 527 y~~~G~~~v~ 536 (677)
T 1kb0_A 527 YMVDGRQYVS 536 (677)
T ss_dssp EEETTEEEEE
T ss_pred EEeCCEEEEE
Confidence 7788876554
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.87 E-value=6.4e-07 Score=102.26 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=106.0
Q ss_pred EEEec--CCEEEEEe-CC-------------------eEEEEeCCCCcEEEEecCC--C-------CCeEEEEEcCCC--
Q 005342 511 CFALR--GSHLFSAS-GG-------------------KISIFSLETFQTLATFANP--P-------PIATYFILLPQD-- 557 (701)
Q Consensus 511 ~l~~s--~~~l~s~s-dg-------------------~I~iwd~~~~~~~~~~~~~--~-------~~i~~l~~spdg-- 557 (701)
.++++ ++.++.++ ++ .|..+|.++|+.+..++.. . .+........+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 45665 66777776 55 4999999999999887642 1 112222222244
Q ss_pred --eEEEEeCCCcEEEEeCCCCceEEeecCCC-C--------------------------------------CeEEEEEec
Q 005342 558 --LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-N--------------------------------------RITCLAYSL 596 (701)
Q Consensus 558 --~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-~--------------------------------------~V~~v~~sp 596 (701)
.++.++.+|.++++|..+|+.+....... . .-..++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 68889999999999999999874322100 0 012368899
Q ss_pred CCCEEEEEeC---------------------------------------------CCeEEEEECCCCeeeeeeeeeeccC
Q 005342 597 SLNVLVSSGA---------------------------------------------DAQLCVWDAVGWKKLCSKFLHSFQT 631 (701)
Q Consensus 597 dg~~l~s~s~---------------------------------------------D~~I~vwd~~~g~~~~~~~l~~~~~ 631 (701)
+..++++.+. +|.|+.||+.+|+..-.....
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---- 474 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---- 474 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----
Confidence 8887776532 378999999999755433322
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 632 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 632 ~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.++..-.++..+.+++++ .||.++.||.++|+.+.++..
T Consensus 475 ------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 475 ------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp ------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 223333556677788776 799999999999999987765
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=7.8e-07 Score=87.88 Aligned_cols=202 Identities=12% Similarity=0.026 Sum_probs=132.8
Q ss_pred CCEEEEEEecCCCEEEEEEC--CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 519 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l 519 (701)
.....+.|+|||...++.+. ++.|.+. |+.+++.+.... -+.......+++.|+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~i---------------------D~~tg~v~~~i~-l~~~~fgeGi~~~g~~l 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQV---------------------ALQTGKVENIHK-MDDSYFGEGLTLLNEKL 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEE---------------------ETTTCCEEEEEE-CCTTCCEEEEEEETTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEE---------------------ECCCCCEEEEEe-cCCCcceEEEEEeCCEE
Confidence 34688999998754444443 5788887 556676554321 11222334566666677
Q ss_pred EEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEE
Q 005342 520 FSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITC 591 (701)
Q Consensus 520 ~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~ 591 (701)
+.+. ++.+.++|..+++.+.++...... ...+++|| .++++..++.|+++|..+.+.+..+.-.. ..++.
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 6666 799999999999999988643111 23456678 55555678899999999998887776321 24678
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC----CCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEEC
Q 005342 592 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 665 (701)
Q Consensus 592 v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~----~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~ 665 (701)
+.|. +|...+....++.|.+-|..+++......+..+.. ...+.....+.|+|+|+++.+++ + ..+.+.+.++
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 8888 77655666568899999999987544333321100 00001135689999999876665 5 5778888877
Q ss_pred CCC
Q 005342 666 PTL 668 (701)
Q Consensus 666 ~~g 668 (701)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.85 E-value=1.7e-06 Score=91.12 Aligned_cols=292 Identities=9% Similarity=-0.033 Sum_probs=161.6
Q ss_pred CcccccccCccceeEEEeecCc---------ceeeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCCC
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMD---------WWVPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQEG 372 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~---------~v~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 372 (701)
+.|..+|..+|+.+........ .+. .......+ +.++.+..+|..+|+.+-.. ..
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~----------~~ 131 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT----------KV 131 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEEEEE----------EC
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCCEEEEE----------eC
Confidence 5677888888988877665321 111 12223333 66789999999999876541 11
Q ss_pred CCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCc-eeEeecCCCCC-CCCEEEEEEe
Q 005342 373 RPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSF-GGRVVRLIYS 450 (701)
Q Consensus 373 ~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~-~~~l~~~~~~~-~~~v~~l~~s 450 (701)
...+ ....... +..++.++.++.+..+|.. +++ .+......... ..........
T Consensus 132 ~~~~------------------~~~p~~~--~~~v~v~~~~g~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 132 AGEA------------------LSRPVVS--DGLVLIHTSNGQLQALNEA----DGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp SSCC------------------CSCCEEE--TTEEEEECTTSEEEEEETT----TCCEEEEEECCC-----CCCCCCEEE
T ss_pred CCce------------------EcCCEEE--CCEEEEEcCCCeEEEEECC----CCcEEEEEeCCCCceeecCCCCcEEE
Confidence 1000 0011111 3477778888999999987 444 33322211000 0000111122
Q ss_pred cCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe-ecccCCCCCCe-EEEEecCCEEEEEe-CCeE
Q 005342 451 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSI-SCFALRGSHLFSAS-GGKI 527 (701)
Q Consensus 451 pdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v-~~l~~s~~~l~s~s-dg~I 527 (701)
+..+++++.++.+..+|..++.. +|......... ..+. .-..+ ......+..++.++ ++.+
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~------------~w~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQM------------IWQQRISQATGSTEID--RLSDVDTTPVVVNGVVFALAYNGNL 251 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCE------------EEEEECCC-------------CCCCCCEEETTEEEEECTTSCE
T ss_pred --CCEEEEEcCCCEEEEEECCCCcE------------EEEEecccCCCCcccc--cccccCCCcEEECCEEEEEecCcEE
Confidence 34677788889898886643321 11111000000 0000 00001 11122366777777 8999
Q ss_pred EEEeCCCCcEEEEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342 528 SIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~~spdg~~l~s~s~ 606 (701)
..+|..+++.+..... .....+... ++.+++++.++.++.+|..+++.+..... ....+..... .+..|+.++.
T Consensus 252 ~~~d~~tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 252 TALDLRSGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EEEETTTCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred EEEECCCCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 9999999998877652 234444443 22788888999999999999988766652 2222233333 3467888999
Q ss_pred CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeE-EEEEcCCCCEEEEEecCeEEEEE
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLSIHEGQIDVYE 664 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~-~v~~spdg~~l~sg~Dg~I~iwd 664 (701)
+|.++++|..+|+......+. + ..+. .... .++.+++.+.+|.|+.|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~----~-----~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVD----S-----SGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECC----T-----TCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecC----C-----CcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 999999999999754333221 1 1111 1111 245444445789998887
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=1.8e-06 Score=98.40 Aligned_cols=141 Identities=12% Similarity=0.030 Sum_probs=99.7
Q ss_pred eEEEEeCCCCcEEEEecCCC---------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC------
Q 005342 526 KISIFSLETFQTLATFANPP---------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------ 586 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------ 586 (701)
.|..+|..+|+.+..++... .....+....+| .+++++.+|.++++|..+|+.+..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998876321 112222333355 68889999999999999999876554211
Q ss_pred ----C-Ce------------------------EEEEEecCCCEEEEEeC-------------------------------
Q 005342 587 ----N-RI------------------------TCLAYSLSLNVLVSSGA------------------------------- 606 (701)
Q Consensus 587 ----~-~V------------------------~~v~~spdg~~l~s~s~------------------------------- 606 (701)
+ ++ ..++++|++.++++.+.
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 0 01 15688998887776543
Q ss_pred ------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeee
Q 005342 607 ------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 607 ------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~ 673 (701)
.+.|..||+.+|+..-..... .++.+..++.++..++++ .||.+++||..+|+.+.+
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCC----------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 278999999999754433222 334445566777777776 799999999999999998
Q ss_pred eee
Q 005342 674 VLL 676 (701)
Q Consensus 674 l~~ 676 (701)
+..
T Consensus 514 ~~~ 516 (677)
T 1kb0_A 514 APT 516 (677)
T ss_dssp EEC
T ss_pred eeC
Confidence 874
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.82 E-value=8.6e-10 Score=116.42 Aligned_cols=185 Identities=10% Similarity=0.035 Sum_probs=99.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-CCeEE
Q 005342 452 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 528 (701)
Q Consensus 452 dg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-dg~I~ 528 (701)
++..+++++.||.+..||. .+|+..-. +. . ..+.+..+. +..+++++ ||.|+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~---------------------~tG~~~W~-~~-~--~~~~s~p~~~~g~~~v~~s~dg~l~ 62 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSK---------------------RTGSIKWT-LK-E--DPVLQVPTHVEEPAFLPDPNDGSLY 62 (369)
T ss_dssp CTTEEEEEETTSEEEEEET---------------------TTCCEEEE-EE-C--CCSCCCC-----CCEEECTTTCCEE
T ss_pred eCCEEEEEcCCCEEEEEEC---------------------CCCCEEEE-ec-C--CCceecceEcCCCEEEEeCCCCEEE
Confidence 5678999999999999965 44443321 11 1 222222222 55677766 99999
Q ss_pred EEeCCCCcEEEEecCCCCC-e-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC
Q 005342 529 IFSLETFQTLATFANPPPI-A-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 529 iwd~~~~~~~~~~~~~~~~-i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~ 606 (701)
.||.++|+.+..+..+... + .+..+..++.+++|+.|+.++.||..+|+.+..+..+. ...++|++..+++++.
T Consensus 63 a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp EC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE
T ss_pred EEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec
Confidence 9999999887766533111 1 01111123377788899999999999999888776553 2355678888999999
Q ss_pred CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC----CCEEEEEecCeEEEEECCCCceeeeeee
Q 005342 607 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 607 D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd----g~~l~sg~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
|+.|+.||.++|+......... .....++++ +..++.+.||.++.||..+|+.+.....
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD-----------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE-----------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCEEEeEeccc-----------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9999999999987543322220 111223332 4555556899999999999998776653
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.81 E-value=1.3e-06 Score=99.60 Aligned_cols=309 Identities=10% Similarity=0.040 Sum_probs=172.0
Q ss_pred CcccccccCccceeEEEeecCcce---------eeeEEEEccC-----CCCCeEEEEeccCCccccccccccCCCCCCC-
Q 005342 307 DKLKFPSMDKSRLLSLIKQIMDWW---------VPYCINVMPN-----ANNETISLKDFPTVSNLRYASSILTDKPNQE- 371 (701)
Q Consensus 307 ~~i~iwd~~~~~~~~~l~~h~~~v---------~~~~l~fspd-----s~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~- 371 (701)
+.|.-+|..+|+.+...+.+.... ....+....+ +.|+.+..+|..+|+.+-.. ...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~--------~~~~ 151 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV--------DTRA 151 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE--------ECCS
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee--------cCcC
Confidence 556778888999998876543210 0001223333 67899999999999876552 000
Q ss_pred CCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEc-----CCCcEEEEeccccCCCCce-eEeec-CCC------
Q 005342 372 GRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK-----SLEKSVNLKLQLINEPSEC-RTLLL-PDN------ 438 (701)
Q Consensus 372 ~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s-----~d~~v~iw~~~~~~~~~~~-~~l~~-~~~------ 438 (701)
.... . . .... +... .++..++..+ .++.|..||.. +|+. +.+.. +..
T Consensus 152 ~~~~----------~-~--~~~~--sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~----tG~~~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 152 DHKR----------S-Y--TITG--APRV-VNGKVVIGNGGAEFGVRGYVTAYDAE----TGKEAWRFYTVPGDPKLPPE 211 (689)
T ss_dssp CTTS----------C-C--BCCS--CCEE-ETTEEEECCBCTTTCCBCEEEEEETT----TCCEEEEEESSCCCTTSCCC
T ss_pred CCCC----------C-c--cccC--CcEE-ECCEEEEEeCCCccCCCCEEEEEECC----CCcEEEEecccCCCcccccc
Confidence 0000 0 0 0000 0001 1444333322 36889999987 5543 33321 100
Q ss_pred --------------------CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe
Q 005342 439 --------------------SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT 498 (701)
Q Consensus 439 --------------------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~ 498 (701)
++......++++|++..++.++.++.. |.........|.......+..+|+.+|+.+-
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W 289 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWRSQAKGDNLFLSSIVAVNADTGEYVW 289 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence 000111257888988888888877652 3210000001111111235566778877542
Q ss_pred ecccCCCC-------CCeE--EEEecCC---EEEEEe-CCeEEEEeCCCCcEEEEecCCC-C------------------
Q 005342 499 NDIAADPK-------DSIS--CFALRGS---HLFSAS-GGKISIFSLETFQTLATFANPP-P------------------ 546 (701)
Q Consensus 499 ~~~~~~~~-------~~v~--~l~~s~~---~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-~------------------ 546 (701)
..-...|. .++. .+.+.|+ .++.++ +|.++++|..+|+.+....... .
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~ 369 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEEN 369 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhh
Confidence 21101121 1111 2222343 677788 8999999999999874432110 0
Q ss_pred --------------------CeEEEEEcCCC-eEEEEeC-----------------------------------------
Q 005342 547 --------------------IATYFILLPQD-LFAFGFD----------------------------------------- 564 (701)
Q Consensus 547 --------------------~i~~l~~spdg-~l~~gs~----------------------------------------- 564 (701)
.-..++++|+. .+++++.
T Consensus 370 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 449 (689)
T 1yiq_A 370 AAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEM 449 (689)
T ss_dssp HCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred ccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCC
Confidence 01237889987 6665432
Q ss_pred ----CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe
Q 005342 565 ----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 640 (701)
Q Consensus 565 ----dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v 640 (701)
+|.|+.||+.+++.+-.+..+. ++....+...+.+++.++.|+.++.||.++|+.+....+ +.. ...
T Consensus 450 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~-----~~~---~~~ 520 (689)
T 1yiq_A 450 AKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA-----ASG---VMA 520 (689)
T ss_dssp HTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC---CCS
T ss_pred CCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC-----CCC---ccc
Confidence 3779999999999988776443 344446667788999999999999999999975533222 221 222
Q ss_pred EEEEEcCCCCEEEE
Q 005342 641 NHIQFHPDQIHLLS 654 (701)
Q Consensus 641 ~~v~~spdg~~l~s 654 (701)
.-+.|..+|+..++
T Consensus 521 ~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 521 APVTYSVDGEQYVT 534 (689)
T ss_dssp CCEEEEETTEEEEE
T ss_pred CceEEEECCEEEEE
Confidence 34667889876554
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.78 E-value=1.7e-09 Score=114.21 Aligned_cols=219 Identities=9% Similarity=-0.025 Sum_probs=113.9
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
++..+++++.|+.|..||.. +|+. +.+.. +.+.+..+.+++..+++++.||.++.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~----tG~~~W~~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t--------- 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR----TGSIKWTLKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN--------- 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT----TCCEEEEEEC------CCSCCCC-----CCEEECTTTCCEEEC-------------
T ss_pred eCCEEEEEcCCCEEEEEECC----CCCEEEEecC------CCceecceEcCCCEEEEeCCCCEEEEEECCC---------
Confidence 57789999999999999987 5543 33322 2344444556787777778899999997633
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCe-EEEEe-cCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSI-SCFAL-RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 557 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v-~~l~~-s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg- 557 (701)
|+.+.. +.......+ .+..+ .+..+++++ ++.++.||.++|+.+..+..+. ...++|++
T Consensus 69 ------------G~~~w~-~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~ 131 (369)
T 2hz6_A 69 ------------NEGLTK-LPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS 131 (369)
T ss_dssp -------------CCSEE-CSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-------------------------
T ss_pred ------------Cceeee-eeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC
Confidence 321110 000000000 01112 245667777 8999999999999988876543 23456777
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 634 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg---~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~ 634 (701)
.+++++.|+.|+.||.++|+.+..+..+. ....+++++. ..+++++.||.|+.||..+|+..-...+.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~------- 202 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA------- 202 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-------
T ss_pred EEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-------
Confidence 88999999999999999998766554221 1222333332 45677899999999999999754322211
Q ss_pred CCCCCeE-EEEEcCCCCEEEE---EecCeEEEEECCCCc
Q 005342 635 PETTIVN-HIQFHPDQIHLLS---IHEGQIDVYEAPTLN 669 (701)
Q Consensus 635 ~~~~~v~-~v~~spdg~~l~s---g~Dg~I~iwd~~~g~ 669 (701)
.++. ...++++|...+. ..++.++.+|..+|+
T Consensus 203 ---~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 203 ---SPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp ---SCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred ---CceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence 3443 3456667754211 123445555554444
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.1e-05 Score=80.39 Aligned_cols=210 Identities=10% Similarity=-0.028 Sum_probs=132.0
Q ss_pred CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
..+.+++|++++..|+.+.. ++.|..++..+ +..... + .........++++ +..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------~~~~~~-~-~~~~~~p~~ia~d~~~~~ 92 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTI-I-RQDLGSPEGIALDHLGRT 92 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEE-E-CTTCCCEEEEEEETTTTE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC---------------------CCcEEE-E-ECCCCCccEEEEEecCCe
Confidence 45789999998777766655 67888886532 221110 1 1122457788887 566
Q ss_pred EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEeec-CCCCCeEE
Q 005342 519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK-GHQNRITC 591 (701)
Q Consensus 519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~---dg~I~iwd~~~~~~~~~l~-~h~~~V~~ 591 (701)
++.+. .+.|.++|...................++++|++ .++.+.. .+.|..+++... ....+. ..-...+.
T Consensus 93 lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 93 IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEE
T ss_pred EEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcE
Confidence 66665 6899999986433222222222456899999965 4444333 468988887643 223222 22346789
Q ss_pred EEEecCCCEE-EEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE-E-ecCeEEEEECCCC
Q 005342 592 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL 668 (701)
Q Consensus 592 v~~spdg~~l-~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s-g-~Dg~I~iwd~~~g 668 (701)
++++|++..| ++....+.|.++|...+... ..+. .. .....++.. +..++. . ..+.|.++|..+|
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~---~~-----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--KVLE---GL-----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEE--EEEE---CC-----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceE--EEec---CC-----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 9999987655 45556789999999864311 1111 11 233566654 455555 4 5689999999999
Q ss_pred ceeeeeee-----eeEEEEEeeEE
Q 005342 669 NHTSQVLL-----ISHIMFVQIVV 687 (701)
Q Consensus 669 ~~~~~l~~-----i~~~~fs~~~~ 687 (701)
+.+.+++. ..+++++|..+
T Consensus 240 ~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 240 KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEECCSSCCCCCCEEEECSCC
T ss_pred CceEEEccccccccceeeecCccC
Confidence 99888864 56788877654
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=1e-07 Score=98.17 Aligned_cols=228 Identities=9% Similarity=-0.028 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+.++...++|... .++.+ +..+|.. ....+.... ........... +..+..++.++.+..+|.
T Consensus 62 ~~~~~~~~~g~l~-v~t~~--l~~~d~~----g~~~~~~~~----~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~---- 124 (330)
T 3hxj_A 62 ECRPSIGKDGTIY-FGSDK--VYAINPD----GTEKWRFDT----KKAIVSDFTIF--EDILYVTSMDGHLYAINT---- 124 (330)
T ss_dssp EECCEETTTTEEC-CSSCE--EEEECCC----GGGGGGSCC---------CCEEEE--TTEEEEECTTSEEEEECT----
T ss_pred ccceEEecCCcEE-EecCc--EEEECCC----CcEEEEEEC----CCCcccCceEE--CCEEEEEecCCEEEEEcC----
Confidence 5667777776544 44444 7777753 222222111 11112222233 445777888888888854
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 552 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~ 552 (701)
. ++.... . ..+...+.++... +..+..++ ++.|..+|.. ++....+......+.++.
T Consensus 125 -----------------~-g~~~~~-~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 125 -----------------D-GTEKWR-F-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp -----------------T-SCEEEE-E-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred -----------------C-CCEEEE-E-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 3 332211 1 1122334455566 55566677 7999999998 888777765566677888
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC
Q 005342 553 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (701)
Q Consensus 553 ~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~ 632 (701)
..++|.+.+++ +.|+.+| .+++....+......+.++...++|.+ ..++.++.+..+|. +++... ... .+
T Consensus 184 ~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~--~~~---~~ 253 (330)
T 3hxj_A 184 IGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKW--RFK---TG 253 (330)
T ss_dssp ECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEE--EEE---CS
T ss_pred EcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeE--Eee---CC
Confidence 88888444455 8899999 777777666655567888888888864 44677888998885 443321 111 11
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee
Q 005342 633 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 633 ~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~ 675 (701)
. ..+.++.+.+++.+.+.+.+|.|..+|. +|+.+..+.
T Consensus 254 ~----~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 254 K----RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp S----CCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred C----CccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE
Confidence 1 2233455666777666567889999996 777666554
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.76 E-value=2e-06 Score=90.44 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=128.8
Q ss_pred Ee--cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc------CCCCCCeEEEEec-CCE
Q 005342 449 YS--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA------ADPKDSISCFALR-GSH 518 (701)
Q Consensus 449 ~s--pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~v~~l~~s-~~~ 518 (701)
++ ++++++++.+. ++.|.++|+.+. +..-++... +. +........+..+ +..
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~-----------------p~~p~~~k~-ie~~~~~~~~g~s~Ph~~~~~pdGi 150 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPN-----------------PREPKIIKV-IEPEEVKKVSGYSRLHTVHCGPDAI 150 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSC-----------------TTSCEEEEE-ECHHHHHHHHCEEEEEEEEECSSCE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCC-----------------CCCceeeee-echhhcccccCCCcccceeECCCeE
Confidence 36 88888877666 789999987542 111122211 10 0001123345555 335
Q ss_pred EEEEe-C------CeEEEEeCCCCcEEEEecCCC---CCeEEEEEcCCC-eEEEEe-------------------CCCcE
Q 005342 519 LFSAS-G------GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGF-------------------DDSSI 568 (701)
Q Consensus 519 l~s~s-d------g~I~iwd~~~~~~~~~~~~~~---~~i~~l~~spdg-~l~~gs-------------------~dg~I 568 (701)
++++. + |.|.++|.++++.+.++.... ..-..+.|+|++ .+++.. .+.+|
T Consensus 151 ~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 151 YISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred EEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence 55544 4 789999999999999886322 223568899999 777663 36799
Q ss_pred EEEeCCCCceEEeecCC-C-CCeEEEEE--ecCCCEEEEEe------CCCeEEEEECCCCeeeeeeeeeeccCCC----C
Q 005342 569 LVHCPCTKKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTGL----V 634 (701)
Q Consensus 569 ~iwd~~~~~~~~~l~~h-~-~~V~~v~~--spdg~~l~s~s------~D~~I~vwd~~~g~~~~~~~l~~~~~~~----~ 634 (701)
.+||+.+++.++++.-. . .....+.| +|+++++..++ .+++|.+|....|.......+. +.... .
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~l 309 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNL 309 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCccccccc
Confidence 99999999888887642 1 23445555 99999877666 5678988887766433333322 21110 0
Q ss_pred C--------CCCCeEEEEEcCCCCEEEEE--ecCeEEEEECC
Q 005342 635 P--------ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 666 (701)
Q Consensus 635 ~--------~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~ 666 (701)
+ .......|.+||||++|.++ ..+.|.+||+.
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 0 01446789999999999987 47899999985
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.74 E-value=4.7e-06 Score=87.67 Aligned_cols=225 Identities=8% Similarity=-0.039 Sum_probs=136.0
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCce-eEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccc
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 481 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~ 481 (701)
++..++.++.++.+..+|.. +++. +...........++ . . +..+++++.++.+..+|.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~----tG~~~W~~~~~~~~~~~p~----~-~-~~~v~v~~~~g~l~~~d~----------- 160 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTS----DGTVAWQTKVAGEALSRPV----V-S-DGLVLIHTSNGQLQALNE----------- 160 (376)
T ss_dssp ETTEEEEEETTSEEEEEETT----TCCEEEEEECSSCCCSCCE----E-E-TTEEEEECTTSEEEEEET-----------
T ss_pred eCCEEEEEcCCCEEEEEECC----CCCEEEEEeCCCceEcCCE----E-E-CCEEEEEcCCCeEEEEEC-----------
Confidence 45677788888999999987 5543 34333111111111 1 1 446788888998888865
Q ss_pred cceeeEEeeCCCCeEEeecccCCCCCCe------EEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCC-------
Q 005342 482 VNMESQLYQPSSKLVMTNDIAADPKDSI------SCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI------- 547 (701)
Q Consensus 482 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v------~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~------- 547 (701)
.+|+..-. .. ....+ ......+..++.++ ++.+..+|..+++.+.........
T Consensus 161 ----------~tG~~~W~-~~--~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 161 ----------ADGAVKWT-VN--LDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp ----------TTCCEEEE-EE--CCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred ----------CCCcEEEE-Ee--CCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 34432211 00 00111 12223356677777 899999999999988776532110
Q ss_pred ---e-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 548 ---A-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 548 ---i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
+ ...... ++.+++++.++.++.+|..+++.+..... .....+.. ++..++.++.++.++.+|..+|+..-.
T Consensus 228 ~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 228 LSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp --CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred ccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 1 111111 23777888899999999999988766542 23444443 466788888899999999999864322
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
.. .. +. ..+..... .+..|+++ .+|.+..+|..+|+.+.....
T Consensus 303 ~~---~~-~~----~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 303 QS---DL-LH----RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EC---TT-TT----SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ec---cc-CC----CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 11 00 11 11222222 23455555 789999999999998776653
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.69 E-value=5.6e-07 Score=93.97 Aligned_cols=252 Identities=6% Similarity=-0.119 Sum_probs=153.4
Q ss_pred cccccccCccceeEEEeecCcceeeeEEEEccC------C-----------CCCeEEEEeccCCccccccccccCCCCCC
Q 005342 308 KLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPN------A-----------NNETISLKDFPTVSNLRYASSILTDKPNQ 370 (701)
Q Consensus 308 ~i~iwd~~~~~~~~~l~~h~~~v~~~~l~fspd------s-----------~d~~i~lWd~~~~~~~~~~~~~~~~~~~~ 370 (701)
.|.+.|.++++.+.++..... |.+.|+|| + .+++|.+||..+++....+ . +
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~----P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I-------~-v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL----SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-------E-L 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT----CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-------E-E
T ss_pred eEEEEECCCCeEEEEEeCCCC----CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE-------E-C
Confidence 566899999999999875443 27999999 2 2689999999999987773 0 1
Q ss_pred CCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcC--CCcEEE--EeccccCCCCceeEeecCCCCCCCCEEE
Q 005342 371 EGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKS--LEKSVN--LKLQLINEPSECRTLLLPDNSFGGRVVR 446 (701)
Q Consensus 371 ~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~--d~~v~i--w~~~~~~~~~~~~~l~~~~~~~~~~v~~ 446 (701)
.+... .+.+ .....++++|||++++.+.. +..+.+ +|.. + ...+..+ +.
T Consensus 115 ~~~~~------------~~~g-~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~----t--v~~i~v~-----~~--- 167 (368)
T 1mda_H 115 PDAPR------------FSVG-PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS----D--DQLTKSA-----SC--- 167 (368)
T ss_dssp TTSCS------------CCBS-CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE----E--EEEEECS-----SC---
T ss_pred CCccc------------cccC-CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh----h--ceEEECC-----Cc---
Confidence 10000 0000 01235899999999998864 467888 8886 2 2333321 11
Q ss_pred EEEecCCC-EEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEe---ecccCCCCCCeEEEEec-C-CEEE
Q 005342 447 LIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT---NDIAADPKDSISCFALR-G-SHLF 520 (701)
Q Consensus 447 l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~l~~s-~-~~l~ 520 (701)
....|+|+ .+++.+.||.+.+.+..+.... .++... ..+.. ...+. +.. + .+++
T Consensus 168 ~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~----------------~~~v~~~~t~~i~v-g~~P~---~~~~~~~~~~ 227 (368)
T 1mda_H 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAA----------------AGIVGAQCTGAQNC-SSQAA---QANYPGMLVW 227 (368)
T ss_dssp CCCEEEETTEEECCCCTTSCEEEECCSSCCC----------------CEECCCCSCTTSCB-CSCCE---EETTTTEEEE
T ss_pred eEEccCCCeEEEEEcCCCCEEEEECcccccc----------------CCeEEEEeeeeeeC-CCCcc---ccccCCEEEE
Confidence 12345554 3445566888877765331000 011110 00101 12232 233 4 3444
Q ss_pred EEeCCeEEEEeCCCCc--EEEEecCC----------CCCeEEEEEcCCC-eEEEEeC---------CCcEEEEeCCCCce
Q 005342 521 SASGGKISIFSLETFQ--TLATFANP----------PPIATYFILLPQD-LFAFGFD---------DSSILVHCPCTKKT 578 (701)
Q Consensus 521 s~sdg~I~iwd~~~~~--~~~~~~~~----------~~~i~~l~~spdg-~l~~gs~---------dg~I~iwd~~~~~~ 578 (701)
+.. +.+.+.|..+.. .+..+... ......++++||+ .++++.. ++.+.++|..+++.
T Consensus 228 vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v 306 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence 444 889999986532 22222110 1112237899999 5555432 23566999999999
Q ss_pred EEeecCCCCCeEEEEEecCCC-EEEEEe-CCCeEEEEECCCCee
Q 005342 579 KAKLKGHQNRITCLAYSLSLN-VLVSSG-ADAQLCVWDAVGWKK 620 (701)
Q Consensus 579 ~~~l~~h~~~V~~v~~spdg~-~l~s~s-~D~~I~vwd~~~g~~ 620 (701)
+.++.... ....++|+|||+ .+++.. .+++|.++|+.+++.
T Consensus 307 v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 307 SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 99887543 588999999998 566677 599999999999753
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=4.3e-06 Score=81.56 Aligned_cols=188 Identities=9% Similarity=0.047 Sum_probs=122.9
Q ss_pred CCCEEEEEEecCCCEEEEEECCC--cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 518 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 518 (701)
..-...+.|+ ++....+.+.+| .|+++ |+.++++.... .-.....--.++..++.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~v---------------------D~~Tgkv~~~~-~l~~~~FgeGit~~g~~ 98 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKV---------------------DIESGKTLQQI-ELGKRYFGEGISDWKDK 98 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEE---------------------CTTTCCEEEEE-ECCTTCCEEEEEEETTE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEE---------------------ECCCCcEEEEE-ecCCccceeEEEEeCCE
Confidence 3446888998 676666666666 77777 55777755432 11111122345556666
Q ss_pred EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC--C---CCeE
Q 005342 519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--Q---NRIT 590 (701)
Q Consensus 519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h--~---~~V~ 590 (701)
|.... ++.+.+||.++++.+.++...... ..+++|+ .++.+..++.|+++|..+.+.+.++.-. . ..++
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 66666 799999999999999998754322 2334567 6665556788999999999888876542 1 3456
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCC---CCCCCCCeEEEEEcCCCCEEEE-E
Q 005342 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG---LVPETTIVNHIQFHPDQIHLLS-I 655 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~---~~~~~~~v~~v~~spdg~~l~s-g 655 (701)
.+.|. +|+..|..-.++.|.+.|.++|+....-.+..+... ..+.....+.|+|+|+++.|.+ |
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 67886 777666665788999999999975543333212111 0111245699999998776665 5
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=1.3e-06 Score=85.16 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=118.6
Q ss_pred CCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 005342 505 PKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKA 580 (701)
Q Consensus 505 ~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~ 580 (701)
.......+.++ +....+.+ +|.|+++|+++++.+..+ -. .... .+++..+....+...++.+.+||..+.+.+.
T Consensus 53 ~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 53 TNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp TTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred CccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34456788888 44444555 789999999999988877 22 2333 3555433344456678899999999999999
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe
Q 005342 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 659 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~ 659 (701)
++... ..-..++ +|++.|+.+..+++|.++|..+.+......+.. .+.. -..++.+.|. +|+..+.. .++.
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--~g~~--v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--RGQP--VELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE--TTEE--CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--CCcc--cccccccEEe-CCEEEEEECCCCe
Confidence 88753 2223444 677877777778999999999976544333321 1110 0356778887 77655545 5789
Q ss_pred EEEEECCCCceeeeeee-----------------eeEEEEEee
Q 005342 660 IDVYEAPTLNHTSQVLL-----------------ISHIMFVQI 685 (701)
Q Consensus 660 I~iwd~~~g~~~~~l~~-----------------i~~~~fs~~ 685 (701)
|.+.|..+|+.+..+.. .+++||+|.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 99999999999888764 378999875
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=7.9e-06 Score=80.66 Aligned_cols=192 Identities=8% Similarity=-0.026 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCeEEEEcC--CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~--d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~ 471 (701)
...++|+||+.+.++.+. ++.|.+.|+. +++... .++... ......+++ +|+.+..+.. ++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~----tg~v~~-~i~l~~-~~fgeGi~~--~g~~lyv~t~~~~~v~vi--- 91 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ----TGKVEN-IHKMDD-SYFGEGLTL--LNEKLYQVVWLKNIGFIY--- 91 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETT----TCCEEE-EEECCT-TCCEEEEEE--ETTEEEEEETTCSEEEEE---
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECC----CCCEEE-EEecCC-CcceEEEEE--eCCEEEEEEecCCEEEEE---
Confidence 467999999766666553 5799999998 665544 212221 122234444 4666666655 7888888
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecCCC-----
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPP----- 545 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~----- 545 (701)
|+.+.+.+.. +..+ ...-..++.+|+.++++. ++.|.++|..+.+.+..+....
T Consensus 92 ------------------D~~t~~v~~~-i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 92 ------------------DRRTLSNIKN-FTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp ------------------ETTTTEEEEE-EECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred ------------------ECCCCcEEEE-EECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 5566665543 3223 122234666666666555 7999999999998888776321
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-------------CCCeEEEEEecCCC-EEEEEeCCCeE
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------------QNRITCLAYSLSLN-VLVSSGADAQL 610 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h-------------~~~V~~v~~spdg~-~l~s~s~D~~I 610 (701)
.....+.+. +| ..+....++.|.+.|..+++.+..+.-. ....+.++|+|+++ +++++...+++
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 135677888 77 5566667889999999999998887631 12568999999886 55667778899
Q ss_pred EEEECCCC
Q 005342 611 CVWDAVGW 618 (701)
Q Consensus 611 ~vwd~~~g 618 (701)
++.++...
T Consensus 231 ~~i~l~~~ 238 (266)
T 2iwa_A 231 FEIKLHLV 238 (266)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 88887653
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=1.5e-06 Score=84.88 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=116.5
Q ss_pred CCCeEEEEec-CCEEEEEe-CC--eEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE
Q 005342 506 KDSISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 506 ~~~v~~l~~s-~~~l~s~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
......+.|+ +....+++ +| .|+++|+++++.+..+.... ......+.+++ ...+...++.+.+||..+.+.+
T Consensus 42 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 42 KAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp TCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred CcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 3445788888 64445555 55 89999999999998886433 33333333344 4444556889999999999999
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (701)
Q Consensus 580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg 658 (701)
.++..... ...+++|++.|+.+..+++|.++|..+.+......+. ..+... ..++.+.|. +|+..+.. .++
T Consensus 121 ~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp EEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSS
T ss_pred EEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCC
Confidence 98874322 2234467776666666789999999997654332222 111110 345678887 77655555 688
Q ss_pred eEEEEECCCCceeeeeee----------------eeEEEEEee
Q 005342 659 QIDVYEAPTLNHTSQVLL----------------ISHIMFVQI 685 (701)
Q Consensus 659 ~I~iwd~~~g~~~~~l~~----------------i~~~~fs~~ 685 (701)
.|.+.|..+|+.+..+.. .+++||+|.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 999999999999887763 378999986
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.65 E-value=0.00025 Score=82.54 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=152.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCC-----CCCCCCEEEEEEecCCCEEEEEECCCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 469 (701)
|.++...++|.+.+ |+.++.+..|+.. ++....+.... ......|.++...++|+.|..|+.++-+..||
T Consensus 359 V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 359 VSCIVEDKDKNLWI-GTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp EEEEEECTTSCEEE-EESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 99999998887554 6666778999886 45444433211 11246799999999998566777777788885
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecc--cCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecC---
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN--- 543 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~--- 543 (701)
. .++++..... ...+...|.++... ...|..|+.+.+.+||..+++.......
T Consensus 434 ~---------------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 434 R---------------------NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp T---------------------TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTC
T ss_pred C---------------------CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccc
Confidence 4 3333222100 00124578888888 4445555535588999877654332211
Q ss_pred ---CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 005342 544 ---PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVW 613 (701)
Q Consensus 544 ---~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~v~~spdg~~l~s~s~D~~I~vw 613 (701)
....|.++..+++|.+..|+. +-+..||..+++. .+. .....|.++...++|.+.++. .. -+..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEE
T ss_pred cccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeE
Confidence 235689999998884455555 5688899877655 222 133578999999999865543 33 58899
Q ss_pred ECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342 614 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 614 d~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
|..+++. ..+. ...+-. ...|.++...++|++.+++ ++.|..||..+++.
T Consensus 568 d~~~~~~---~~~~-~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 568 NEKDKQI---KRYN-TTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKF 617 (795)
T ss_dssp ETTTTEE---EEEC-GGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE
T ss_pred CCCCCcE---EEeC-CCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE
Confidence 9887642 2222 222221 1568999999999876665 56688889876653
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.61 E-value=0.00013 Score=84.92 Aligned_cols=241 Identities=11% Similarity=0.019 Sum_probs=151.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec-C--CCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-P--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~-~--~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 471 (701)
|.++...++|... .|+.++.|..++.. .+....+.. + ..-....|.++...++|. |-.|+.++-+..|+.
T Consensus 312 i~~i~~D~~g~lW-igt~~~Gl~~~~~~----~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~- 384 (795)
T 4a2l_A 312 VRSIFMDSQGGMW-LGTYFGGLNYYHPI----RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNP- 384 (795)
T ss_dssp EEEEEECTTSCEE-EEESSSCEEEECGG----GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECT-
T ss_pred EEEEEEeCCcCEE-EEECCCCeEEeCCC----cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcC-
Confidence 9999999998755 45566778888875 333332221 1 111346799999999887 556777777888854
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 542 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~ 542 (701)
.++.+....... -....|.++..+ |..|..|+ ++.+..||..+++...-..
T Consensus 385 --------------------~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 385 --------------------ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp --------------------TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred --------------------CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 333322110000 123578888887 55377777 7889999998876443221
Q ss_pred ----CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC------CCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 005342 543 ----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLNVLVSSGADAQLCV 612 (701)
Q Consensus 543 ----~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~------h~~~V~~v~~spdg~~l~s~s~D~~I~v 612 (701)
.....|.++...++|.|..|+. +-+.+||..+++....... ....|.++...++|.+.+.. . +-+..
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~ 521 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV 521 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence 1245689999988884555555 4589999887755432211 23578999999999866544 3 45889
Q ss_pred EECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342 613 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 613 wd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
||..++.. .+.............|.++...++|.+.+++.. .+..||..+++.
T Consensus 522 ~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 522 FKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred EeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence 99887642 111000000011257899999999987665544 688899876654
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.61 E-value=4.8e-06 Score=87.52 Aligned_cols=230 Identities=11% Similarity=0.008 Sum_probs=136.3
Q ss_pred CCCCeEEE-EcCCCcEEEEeccccCCCCceeEeecCC----CCCCCCEEEEEEecCCCEEEEEECC------CcEEEEec
Q 005342 402 PDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQT------ATHKLWKW 470 (701)
Q Consensus 402 pdg~~l~s-~s~d~~v~iw~~~~~~~~~~~~~l~~~~----~~~~~~v~~l~~spdg~~l~s~s~d------g~i~vwd~ 470 (701)
+++++|+. |..++.|.++|+.+.+..-+..+..-+. ......-..+..+|+| .++++..+ |.+.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl-- 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML-- 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE--
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE--
Confidence 77887765 5577899999986322211222211000 0011234567788999 66665555 567666
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccC-CCCCCeEEEEec--CCEEEEEe--------------------CCeE
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFALR--GSHLFSAS--------------------GGKI 527 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~l~~s--~~~l~s~s--------------------dg~I 527 (701)
|..+++++.+.-.. +....-..+.|+ ++.+++.. +.+|
T Consensus 170 -------------------D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 170 -------------------DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp -------------------CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred -------------------ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEE
Confidence 55666655442111 111223356677 66777763 6899
Q ss_pred EEEeCCCCcEEEEecCCC--CCeEEEEE--cCCC-eEEEEe------CCCcEEEEeCCCCce--EEee--cC--------
Q 005342 528 SIFSLETFQTLATFANPP--PIATYFIL--LPQD-LFAFGF------DDSSILVHCPCTKKT--KAKL--KG-------- 584 (701)
Q Consensus 528 ~iwd~~~~~~~~~~~~~~--~~i~~l~~--spdg-~l~~gs------~dg~I~iwd~~~~~~--~~~l--~~-------- 584 (701)
.+||+.+++.+.++.... .....+.| +|++ ++.+++ .+++|.+|....++. .+.+ ..
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 999999998888887431 23455555 9999 655555 566887766544321 1111 10
Q ss_pred --------CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-eeeeeeeeeeccCCCC----------CCCCCeEEEE
Q 005342 585 --------HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW-KKLCSKFLHSFQTGLV----------PETTIVNHIQ 644 (701)
Q Consensus 585 --------h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g-~~~~~~~l~~~~~~~~----------~~~~~v~~v~ 644 (701)
-......+.+||||++|..+.. .+.|.+||+... .. +.+..+..|.. +..+.-..++
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~---~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP---VLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC---EEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---EEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 0234788999999998876554 789999998632 22 22222333300 0001357899
Q ss_pred EcCCCCEEEEEe
Q 005342 645 FHPDQIHLLSIH 656 (701)
Q Consensus 645 ~spdg~~l~sg~ 656 (701)
++|||++|+++.
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999998864
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.58 E-value=6.6e-07 Score=97.34 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=139.7
Q ss_pred cCCCCeEEEEcC-CCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEE-e-cCCCEEEEEEC---------------
Q 005342 401 LPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIY-S-HSGDFLVALTQ--------------- 461 (701)
Q Consensus 401 spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~-s-pdg~~l~s~s~--------------- 461 (701)
.|||+++..+.. ++.|.+.|+. +.++..+. +|. ......+++ + |+++++++++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~----t~~~~~ii~ip~---g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCD----VMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETT----TTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CcCCCEEEEEcCCCCEEEEEECC----CceEeeEEeCCC---CCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 358888777655 5679999998 55554432 322 345778887 5 99999988863
Q ss_pred ---CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C-----------
Q 005342 462 ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----------- 524 (701)
Q Consensus 462 ---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d----------- 524 (701)
++.+.+.|. ++.++.....-.+ ....++++ |+++++++ +
T Consensus 171 ~~~~~~vtvID~---------------------~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~ 226 (595)
T 1fwx_A 171 ANYVNVFTAVDA---------------------DKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMT 226 (595)
T ss_dssp GGEEEEEEEEET---------------------TTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred cccCceEEEEEC---------------------CCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhcc
Confidence 234555544 4433222111001 11222233 33333333 1
Q ss_pred ---------------------------CeEEEEeCCC--CcE-EEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342 525 ---------------------------GKISIFSLET--FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 572 (701)
Q Consensus 525 ---------------------------g~I~iwd~~~--~~~-~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd 572 (701)
+.|.+.|..+ ++. +..+.. .....++.++||| .++++..+.+|.++|
T Consensus 227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 227 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 3488888887 444 455542 2345789999999 555566778999999
Q ss_pred CCCCc------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC------eeeeeeeeeeccCCCC
Q 005342 573 PCTKK------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLV 634 (701)
Q Consensus 573 ~~~~~------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g------~~~~~~~l~~~~~~~~ 634 (701)
+.+.+ .+...... .....++|+|+|...++.--|++|.+||+..+ +.. ...+.+++.+..
T Consensus 306 ~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yq 383 (595)
T 1fwx_A 306 VTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQ 383 (595)
T ss_dssp GGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSC
T ss_pred CcccccccccccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccc
Confidence 98653 33444322 35788999999944445667999999999872 111 234444444432
Q ss_pred C-CCCCeEEEEEcCCCCEEEEE---ecCeE-----------EEEECCCCc
Q 005342 635 P-ETTIVNHIQFHPDQIHLLSI---HEGQI-----------DVYEAPTLN 669 (701)
Q Consensus 635 ~-~~~~v~~v~~spdg~~l~sg---~Dg~I-----------~iwd~~~g~ 669 (701)
+ |...-.++..+|||++|+++ +-..+ .++|+..++
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 1 00111233568999999985 32334 899996555
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.58 E-value=3.5e-05 Score=74.47 Aligned_cols=188 Identities=13% Similarity=0.114 Sum_probs=122.5
Q ss_pred CCCEEEEEEecCCCEEEEEECC--CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCE
Q 005342 441 GGRVVRLIYSHSGDFLVALTQT--ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 518 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 518 (701)
..-...+.|++ +....+.+.+ +.|+.+ |+.++++.... .-.....--.++..++.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~v---------------------D~~tgkv~~~~-~l~~~~fgeGi~~~~~~ 76 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKV---------------------DLETGRILQRA-EVPPPYFGAGIVAWRDR 76 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEE---------------------ETTTCCEEEEE-ECCTTCCEEEEEEETTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEE---------------------ECCCCCEEEEE-eCCCCcceeEEEEeCCE
Confidence 45678899986 5555555554 477777 55677755431 11111122345555666
Q ss_pred EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeE
Q 005342 519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT 590 (701)
Q Consensus 519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~ 590 (701)
|.... ++.+.+||.++.+.+.++.....+ ..++ +++ .++++..++.|+++|..+.+.+.++.-.. ..++
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 66666 899999999999999998854332 3444 567 56665668899999999998888776421 2456
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC----CCCCCCeEEEEEcCCCCEEE-EE
Q 005342 591 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL----VPETTIVNHIQFHPDQIHLL-SI 655 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~----~~~~~~v~~v~~spdg~~l~-sg 655 (701)
.+.|. +|+..|..-.+..|.+.|.++|+....-.+..+.... .+.....+.|+++|+++.|. +|
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 67765 7776666656889999999999765544433222111 11124679999999866555 56
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=1.1e-05 Score=78.08 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=117.9
Q ss_pred CCCCeEEEEec-CCEEEEEe-C--CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceE
Q 005342 505 PKDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 505 ~~~~v~~l~~s-~~~l~s~s-d--g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
.......+.|+ +....+.+ + ..|+.+|+++++.+..+....... -.++...+........++.+.+||..+.+.+
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 44567789999 54444444 3 499999999999998886433221 3344443224455677899999999999999
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecC
Q 005342 580 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 658 (701)
Q Consensus 580 ~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg 658 (701)
.++..... -..+ .+|+..|+.+..+++|.++|..+.+......+. ..+.. -..++.+.|. +|+..+.. .++
T Consensus 99 ~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~--~~g~~--~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT--AGGRP--LDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc--cCCcc--cccceeeEEe-CCEEEEEECCCC
Confidence 98875322 2344 456776666666889999999997654333332 11110 0345777776 67655555 578
Q ss_pred eEEEEECCCCceeeeeee-----------------eeEEEEEee
Q 005342 659 QIDVYEAPTLNHTSQVLL-----------------ISHIMFVQI 685 (701)
Q Consensus 659 ~I~iwd~~~g~~~~~l~~-----------------i~~~~fs~~ 685 (701)
.|.+.|..+|+.+..+.. .++++|+|.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 999999999999888762 578999885
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.56 E-value=9e-05 Score=73.68 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCeE-EEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCC
Q 005342 395 SRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l-~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~ 472 (701)
+..++|+|++..| ++...++.|..++.. ++....+. + ........++++|++..++.+.. ++.|.+++.+.
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~-~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLH----GGEPTTII-R--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESS----SCCCEEEE-C--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecC----CCCcEEEE-E--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 6689999976555 455567889999986 33322221 1 12256789999998776666655 67888886622
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe-C---CeEEEEeCCCCcEEEEec-CCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFA-NPP 545 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s-d---g~I~iwd~~~~~~~~~~~-~~~ 545 (701)
. ....+ . .........++++ +..++.+. . +.|..+++.. .....+. ...
T Consensus 111 ~-------------------~~~~~---~-~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~ 166 (267)
T 1npe_A 111 T-------------------QRRVL---F-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNL 166 (267)
T ss_dssp C-------------------SCEEE---E-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTC
T ss_pred C-------------------CEEEE---E-ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCC
Confidence 1 11111 1 1112356788888 56665554 3 6888888853 3333332 223
Q ss_pred CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeee
Q 005342 546 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 623 (701)
Q Consensus 546 ~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~ 623 (701)
.....++++|++ ++++....+.|.++|.........+.+. .....++.. ++.++++....+.|.++|..+|+..
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-- 242 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-- 242 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce--
Confidence 456899999987 5555666789999998765444333332 334566654 3444455556789999999988533
Q ss_pred eeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 624 KFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 624 ~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
..+..+.. .....+++.|++.
T Consensus 243 ---~~i~~g~~---~~p~gi~~~~~~~ 263 (267)
T 1npe_A 243 ---DTFHPHKQ---TRLYGITIALSQC 263 (267)
T ss_dssp ---EEECCSSC---CCCCCEEEECSCC
T ss_pred ---EEEccccc---cccceeeecCccC
Confidence 22322321 2457788888864
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.52 E-value=9.3e-05 Score=75.32 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCc--EEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT--HKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--i~vwd~~~ 472 (701)
...++|+|+|+++++...++.|..|+.. ......+.. ...+..++++++|+.+++....+. +..+
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~----g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~~~~v~~~---- 100 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATV-----EGKVSGLAFTSNGDLVATGWNADSIPVVSL---- 100 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTTSCEEEEE----
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCC----CceEEEEeC-----CCCceeEEEcCCCcEEEEeccCCcceEEEE----
Confidence 6789999999988887788999999875 332222222 356889999999996555443333 4444
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEE-e-CCeEEEEeCCCCc-EEEEec------
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQ-TLATFA------ 542 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~-s-dg~I~iwd~~~~~-~~~~~~------ 542 (701)
+..++++... ...........++.. +..++.+ . ++.|+++|..+++ .+....
T Consensus 101 -----------------d~~~g~~~~~-~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 101 -----------------VKSDGTVETL-LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp -----------------ECTTSCEEEE-EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred -----------------cCCCCeEEEE-EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 3344443211 000111223444444 5444444 3 7899999987643 121110
Q ss_pred ---CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-Cce--EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 005342 543 ---NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 614 (701)
Q Consensus 543 ---~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd 614 (701)
..-.....+ +|++ ++++-+..+.|+.+|+.. ++. ...+.. ......++++++|++.++....+.|.++|
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 111234555 7887 455556678999999874 322 112211 13456789999999877777788999999
Q ss_pred CCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc---CCCCEEEEE
Q 005342 615 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH---PDQIHLLSI 655 (701)
Q Consensus 615 ~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s---pdg~~l~sg 655 (701)
.. |+.. .+..+..+- ...++++|. ||++.|++.
T Consensus 240 ~~-G~~~---~~~~~~~~~----~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 240 PD-RSTT---IIAQAEQGV----IGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp TT-CCEE---EEECGGGTC----TTEEEEEECCSTTTTTEEEEE
T ss_pred CC-CCEE---EEeeccccc----CCceEEEEecccCCCCEEEEE
Confidence 76 5321 122132221 457899999 898777664
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=1.6e-05 Score=77.50 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=121.8
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEE
Q 005342 441 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 520 (701)
Q Consensus 441 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~ 520 (701)
..-...+.|+ ++...++.+.+|.|+++ |+.++++....+ .....--.+++.++.|.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~i---------------------D~~Tgkv~~~~l--~~~~FgeGit~~g~~Ly 109 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQL---------------------SLESAQPVWMER--LGNIFAEGLASDGERLY 109 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEEC---------------------CSSCSSCSEEEE--CTTCCEEEEEECSSCEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEE---------------------ECCCCcEEeEEC--CCCcceeEEEEeCCEEE
Confidence 3456788887 35555666667888888 456666443322 11122234666655555
Q ss_pred EEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCC-----CCeEEE
Q 005342 521 SAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITCL 592 (701)
Q Consensus 521 s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~v 592 (701)
... ++.+.+||.++++.+.++...... ..++ +|+ .++.+..++.|+++|..+.+.+.++.-.. ..++.+
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 555 899999999999999998754322 3444 567 66666678899999999999888776421 245677
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC--C--CCCCCCCeEEEEEcCCCC-EEEEE
Q 005342 593 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--G--LVPETTIVNHIQFHPDQI-HLLSI 655 (701)
Q Consensus 593 ~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~--~--~~~~~~~v~~v~~spdg~-~l~sg 655 (701)
.|. +|...|..-.++.|.+-|.++|+....-.+..+.. . ........+.|+|+|+++ ++++|
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 876 77766656568899999999997554433332210 0 001114679999999854 55556
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00034 Score=81.19 Aligned_cols=240 Identities=9% Similarity=0.042 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|.++...++|.+. .|+.++.+..++.. ++....+..+.......|.++...++|.. ..|+.++-+..+
T Consensus 365 v~~i~~d~~g~lW-igt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~------ 432 (781)
T 3v9f_A 365 VSSVCDDGQGKLW-IGTDGGGINVFENG----KRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYY------ 432 (781)
T ss_dssp EEEEEECTTSCEE-EEEBSSCEEEEETT----EEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEE------
T ss_pred eEEEEEcCCCCEE-EEeCCCcEEEEECC----CCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEE------
Confidence 8899998887755 45555668888875 33222211111223567999998888874 556666667777
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCC-----CCCe
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANP-----PPIA 548 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~-----~~~i 548 (701)
++.++++............|.++... ...+..|+.+.+..||..+++........ ...|
T Consensus 433 ---------------~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i 497 (781)
T 3v9f_A 433 ---------------NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFV 497 (781)
T ss_dssp ---------------CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCE
T ss_pred ---------------cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCccccccccee
Confidence 44444433210001134578888888 55666666567999998876644332212 3568
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 549 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 549 ~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
.++...++|.|.+|+.++-+..||..+++... +.. ....|.++...++|.+.++ +.+|.|..||..+++. .
T Consensus 498 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~---~ 572 (781)
T 3v9f_A 498 RSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDY---Q 572 (781)
T ss_dssp EEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCC---E
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcE---E
Confidence 99999988856666765568889987665433 321 2346899999889886554 4466669999887642 2
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCce
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 670 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~ 670 (701)
.+. ...+-. ...|.++...++|.+.+++.+ .|..++..+++.
T Consensus 573 ~~~-~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 573 VFQ-RKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCF 614 (781)
T ss_dssp EEC-GGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEE
T ss_pred Ecc-ccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCce
Confidence 222 112221 156788999999987666544 477788866543
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=6.8e-06 Score=89.45 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=128.9
Q ss_pred cCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEe---c-CCEEEEEe-
Q 005342 451 HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFAL---R-GSHLFSAS- 523 (701)
Q Consensus 451 pdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~---s-~~~l~s~s- 523 (701)
+||+++..... ++.|.+.|+ .+.++... .+. ....+..+++ . ++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl---------------------~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRC---------------------DVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEET---------------------TTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEEC
T ss_pred cCCCEEEEEcCCCCEEEEEEC---------------------CCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecc
Confidence 58888888766 456887755 55553321 121 2234667776 3 67776662
Q ss_pred ------------------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCC------------------
Q 005342 524 ------------------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS------------------ 566 (701)
Q Consensus 524 ------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg------------------ 566 (701)
++.+.++|..+.+...++.... ....++++|+| ++++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 4689999999999888876333 45678899999 777776543
Q ss_pred --------------------cEEEEeCCC--Cce-EEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCee--
Q 005342 567 --------------------SILVHCPCT--KKT-KAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK-- 620 (701)
Q Consensus 567 --------------------~I~iwd~~~--~~~-~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g~~-- 620 (701)
.|.+.|.++ ++. +..+... ....++.++|||++++.++ .+.+|.++|+.+.+.
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence 467777776 444 4444422 2356789999999776554 688999999996420
Q ss_pred ----eee-eeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC----------Cceeeeeee
Q 005342 621 ----LCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT----------LNHTSQVLL 676 (701)
Q Consensus 621 ----~~~-~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~----------g~~~~~l~~ 676 (701)
... .....+..| .....++|+||| .+.+. -|++|.+||+.+ .+.+..++.
T Consensus 314 ~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 314 YENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp HSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred ccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 000 112223333 567899999999 66664 699999999987 455555554
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00036 Score=81.03 Aligned_cols=239 Identities=12% Similarity=0.039 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeec------CCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~------~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
|.++...++|.+ ..|+.++-|..++.. .+....+.. +.......|.++...++|. |..|+.++-+..|
T Consensus 315 v~~i~~D~~g~l-Wigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 315 ARYIFQDSFNNI-WIGTWGGGINFISNA----PPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp EEEEEECSSCCE-EEEEBSSCEEEECSS----CCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred EEEEEEeCCCCE-EEEecCCeEEEeCCC----CCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 899999988864 456656778888876 333333221 1111346799999988887 4566666667777
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeec-ccCCCCCCeEEEEec-CCEEEEEe-CCeEEEEeCCCCcEEEEec---
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTND-IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--- 542 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~v~~l~~s-~~~l~s~s-dg~I~iwd~~~~~~~~~~~--- 542 (701)
+. .++...... -.......|.++... ...|..|+ ++.+..+|..+++.. .+.
T Consensus 389 ~~---------------------~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~ 446 (781)
T 3v9f_A 389 EN---------------------GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEK 446 (781)
T ss_dssp ET---------------------TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTT
T ss_pred EC---------------------CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCC
Confidence 54 222211100 001234578888887 55566677 678999998776543 332
Q ss_pred CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeecCC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 543 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 543 ~~~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
.....|.++...++|.+..|+. +-+..||..+++........ ...|.++...++|.+.+ |+.++-+..||..+
T Consensus 447 ~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDM 524 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCC
Confidence 1345789999988885555666 56899998876554322211 35789999999888655 44434478899887
Q ss_pred CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 618 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 618 g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
++. ..+. ...+- ....|.++...++|.+.+++.+|-+..||..+++
T Consensus 525 ~~~---~~~~-~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 525 QLV---RKFN-QYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp CEE---EEEC-TTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred CeE---EEcc-CCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence 642 1222 11111 1267899999999987666554444888887665
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.41 E-value=0.00014 Score=74.53 Aligned_cols=238 Identities=12% Similarity=0.073 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC--------C--------CCCCEEEEEEec-CCCEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--------S--------FGGRVVRLIYSH-SGDFLV 457 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~--------~--------~~~~v~~l~~sp-dg~~l~ 457 (701)
...++|.|+|++++++..++.|..|+.. .+....+..+.. + ....+..+++.+ +|+ |+
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~ 95 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGP----NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY 95 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCT----TTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCC----CCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence 3468899999988888888999999876 443333321110 0 013578999998 555 56
Q ss_pred EEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeE--EeecccCCCCCCeEEEEec---CCEEEEEe---------
Q 005342 458 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV--MTNDIAADPKDSISCFALR---GSHLFSAS--------- 523 (701)
Q Consensus 458 s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~l~~s---~~~l~s~s--------- 523 (701)
++...+.+..+|. .++.. +..............++++ |+..++..
T Consensus 96 v~d~~~~i~~~d~---------------------~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 96 IVDCYYHLSVVGS---------------------EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEETTTEEEEECT---------------------TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred EEECCCCEEEEeC---------------------CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 6655555766654 22221 1000000011235566665 33333321
Q ss_pred ---------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc--eEEeecCCCCCeE
Q 005342 524 ---------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK--TKAKLKGHQNRIT 590 (701)
Q Consensus 524 ---------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~--~~~~l~~h~~~V~ 590 (701)
++.|..||..+++...... .......++++|+| .++++ +.++.|++|++.... ....+....+ ..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence 2678889987665432222 12234679999999 55544 566899999987521 1112211223 78
Q ss_pred EEEEecCCCEEEEEeC----------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCe
Q 005342 591 CLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 659 (701)
Q Consensus 591 ~v~~spdg~~l~s~s~----------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~ 659 (701)
.+++.++|++.++... .+.|..+|.. |+.. ..+. ...+.. ...+.++.+ .++++.+++ ..+.
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~--~~~~-~~~g~~--~~~~~~~~~-~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL--EVIP-LPPPFA--GEHFEQIQE-HDGLLYIGTLFHGS 305 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE--EEEE-CCTTTT--TSCCCEEEE-ETTEEEEECSSCSE
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEE--EEEE-CCCCCc--cccceEEEE-eCCEEEEeecCCCc
Confidence 8999999997666544 4678888875 4422 2232 222211 044666666 456555554 6788
Q ss_pred EEEEECCC
Q 005342 660 IDVYEAPT 667 (701)
Q Consensus 660 I~iwd~~~ 667 (701)
|.++++..
T Consensus 306 i~~~~~~~ 313 (322)
T 2fp8_A 306 VGILVYDK 313 (322)
T ss_dssp EEEEEC--
T ss_pred eEEEeccc
Confidence 99998853
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.38 E-value=2.7e-05 Score=88.51 Aligned_cols=141 Identities=13% Similarity=0.008 Sum_probs=94.5
Q ss_pred eEEEEeCCCCcEEEEecCC--C-------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC------
Q 005342 526 KISIFSLETFQTLATFANP--P-------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------ 586 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~--~-------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~------ 586 (701)
.|..+|..+|+.+..++.. . .+.....+..+| .++.++.+|.++++|..+|+.+.......
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 4999999999999888642 1 222222333355 58899999999999999999874332111
Q ss_pred -----C-C------------------------eEEEEEecCCCEEEEE--------------------------------
Q 005342 587 -----N-R------------------------ITCLAYSLSLNVLVSS-------------------------------- 604 (701)
Q Consensus 587 -----~-~------------------------V~~v~~spdg~~l~s~-------------------------------- 604 (701)
+ + -..++++|+...++..
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence 0 0 0126788876655431
Q ss_pred ----eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 605 ----GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 605 ----s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
..+|.|+.||+.+|+..-..... .+.....+...+.+++++ .|+.++.||..+|+.+..+..
T Consensus 431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 431 VPAAVVSGALLAWDPVKQKAAWKVPYP----------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCccceEEEEeCCCCcEEEEccCC----------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 13488999999999754333322 223333444567777776 799999999999999887765
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.31 E-value=0.00017 Score=81.86 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=103.7
Q ss_pred EEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCC-------CCeEE--EEecC
Q 005342 446 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-------DSISC--FALRG 516 (701)
Q Consensus 446 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------~~v~~--l~~s~ 516 (701)
.+++.|++..++.++.++.. |+........|.......+..+|+.+|+..-..-...|. .+... +.+.|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~--w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSP--WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCCEEEEeCCCCCc--cccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 46788888888888776542 321000000111111223556677888754221111121 22222 22334
Q ss_pred C---EEEEEe-CCeEEEEeCCCCcEEEEecCCC------------CC------------------------eEEEEEcCC
Q 005342 517 S---HLFSAS-GGKISIFSLETFQTLATFANPP------------PI------------------------ATYFILLPQ 556 (701)
Q Consensus 517 ~---~l~s~s-dg~I~iwd~~~~~~~~~~~~~~------------~~------------------------i~~l~~spd 556 (701)
+ .++.++ +|.++++|..+|+.+....... .+ -..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 3 577777 8999999999999874432111 00 012678888
Q ss_pred C-eEEEEe------------------------------------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC
Q 005342 557 D-LFAFGF------------------------------------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (701)
Q Consensus 557 g-~l~~gs------------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~ 599 (701)
. .+++.. .+|.|+.||+.+++.+-+...+ .++....+...+.
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg 470 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGN 470 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTT
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCC
Confidence 7 444321 2378999999999987766533 3344445556778
Q ss_pred EEEEEeCCCeEEEEECCCCeeee
Q 005342 600 VLVSSGADAQLCVWDAVGWKKLC 622 (701)
Q Consensus 600 ~l~s~s~D~~I~vwd~~~g~~~~ 622 (701)
+++.++.|+.+++||.++|+.+.
T Consensus 471 ~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 471 LVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCcccchhhhhhcChhhe
Confidence 88889999999999999997554
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0027 Score=65.71 Aligned_cols=239 Identities=10% Similarity=0.008 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~ 473 (701)
..+.+..+++ +|+.+.. ..|+..++. ......+.. ....+..++|++.+..|+.+.. .+.|..++..
T Consensus 36 ~~C~~~~~~~-~ll~~~~-~~I~~i~~~----g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-- 103 (349)
T 3v64_C 36 RSCKALGPEP-VLLFANR-IDIRQVLPH----RSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLN-- 103 (349)
T ss_dssp SCEEESSSCC-EEEEECB-SCEEEECTT----SCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--
T ss_pred CcccccccCc-eeEeecc-cceEEEeCC----CCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecC--
Confidence 4455555643 4444433 457777765 333322221 2355889999987776666654 6777777552
Q ss_pred CccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT 549 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~ 549 (701)
++..... + .........++++ +..|+.+. .+.|.+.++........+........
T Consensus 104 -------------------g~~~~~~-~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 104 -------------------GSNVEEV-V-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp -------------------SCSCEEE-E-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred -------------------CCCceEE-E-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 2221110 1 1112234567776 55555554 68999999865443333333345678
Q ss_pred EEEEcCCC--eEEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeee
Q 005342 550 YFILLPQD--LFAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 550 ~l~~spdg--~l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
.++++|.+ ++++-..+ +.|+.+++............-...+.++++|++..|. +-+..+.|..+|+...... ..
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~--~~ 240 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK--AV 240 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EE
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE--EE
Confidence 99999966 55555555 7899999765433222222334578999998666554 4455778999998764311 11
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
+. ... ....++++. .+...++. ..+.|..++..+|+.+..+..
T Consensus 241 ~~----~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 241 IS----QGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EC----SSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred Ee----CCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 11 111 445778873 44444444 578898898778877666654
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0018 Score=68.03 Aligned_cols=237 Identities=11% Similarity=0.003 Sum_probs=138.7
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCc
Q 005342 397 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQ 475 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~ 475 (701)
+.+..++ .+|+.+.. ..|+..++. .+....+.. ....+..++|++.+..|+.+.. .+.|..++.
T Consensus 81 C~~~~~~-~~l~~~~~-~~I~~i~~~----~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~----- 145 (386)
T 3v65_B 81 CKALGPE-PVLLFANR-IDIRQVLPH----RSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANL----- 145 (386)
T ss_dssp EEECSSC-CEEEEECB-SCEEEECTT----SCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEET-----
T ss_pred ECCcccc-ceeEeecC-ccceeeccC----CCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEec-----
Confidence 4444553 34444443 567777775 333333221 2356889999987776666554 677777754
Q ss_pred cccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEE
Q 005342 476 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYF 551 (701)
Q Consensus 476 ~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l 551 (701)
.++..... +. ........++++ +..|+.+. .+.|.+.++........+.........+
T Consensus 146 ----------------~g~~~~~~-~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi 207 (386)
T 3v65_B 146 ----------------NGSNVEEV-VS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207 (386)
T ss_dssp ----------------TSCCEEEE-EC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred ----------------CCCCcEEE-Ee-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence 33221110 11 111234456666 55555544 6899999986544333333334567899
Q ss_pred EEcCCC--eEEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeee
Q 005342 552 ILLPQD--LFAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLH 627 (701)
Q Consensus 552 ~~spdg--~l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~ 627 (701)
+++|.+ ++++-..+ +.|+.+++............-...+.++|+|++..|+ +-+..+.|..+|+..... ..+.
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~ 284 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVI 284 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---EEEE
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---EEEE
Confidence 999876 44454455 7899999765433332333334578999998666554 455678899999876431 1111
Q ss_pred eccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 628 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 628 ~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
. ... ....++++ ..+..+++. ..+.|..++..+|+.+..+..
T Consensus 285 --~-~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 285 --S-QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp --C-SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred --E-CCC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 1 111 44577888 334444444 678899999778877776654
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.22 E-value=0.00044 Score=70.75 Aligned_cols=201 Identities=11% Similarity=0.017 Sum_probs=124.1
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-----------------CC
Q 005342 443 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-----------------DP 505 (701)
Q Consensus 443 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~~ 505 (701)
...+++|+++|+.+.++..++.|..|+..+ +.+....... ..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPN---------------------SGFVDFAYASPYWNKAFCENSTDAEKRPL 78 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTT---------------------TCEEEEEESCTTCCHHHHTTCCCGGGHHH
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCC---------------------CceEEEecccccccccccccccchhcccc
Confidence 345678999998778888888998886532 2211100000 00
Q ss_pred CCCeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec----C-CCCCeEEEEEcC-CC-eEEEEeC-----------
Q 005342 506 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA----N-PPPIATYFILLP-QD-LFAFGFD----------- 564 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~----~-~~~~i~~l~~sp-dg-~l~~gs~----------- 564 (701)
...+..++++ +..|+++. .+.|..+|..++.. ..+. + .......+++++ +| +.++...
T Consensus 79 ~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 79 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp HCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 1246788887 45666665 66688999876542 2221 1 113468899999 88 4444322
Q ss_pred ------CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCCC
Q 005342 565 ------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 637 (701)
Q Consensus 565 ------dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~ 637 (701)
++.|+.||..+++......+ -...+.++++|+|++|+.+ +..+.|++|++.....-....+... .
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~----~--- 229 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI----P--- 229 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC----S---
T ss_pred hcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC----C---
Confidence 36799999877764332222 2345789999999865544 5678999999885311011112111 1
Q ss_pred CCeEEEEEcCCCCEEEEE-e----------cCeEEEEECCCCceeeeee
Q 005342 638 TIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg-~----------Dg~I~iwd~~~g~~~~~l~ 675 (701)
+ ...+++.++|++.++. . .+.|..+|. .|+.+..+.
T Consensus 230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~ 276 (322)
T 2fp8_A 230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP 276 (322)
T ss_dssp S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE
Confidence 3 6789999999877764 3 366888887 577776664
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0062 Score=61.99 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=134.3
Q ss_pred EEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCcccccccccee
Q 005342 407 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME 485 (701)
Q Consensus 407 l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~ 485 (701)
|+.+.. ..|+..++. +.....+. + ....+.+++|++++..|+.+.. ++.|..++..+..
T Consensus 4 ll~~~~-~~I~~i~~~----~~~~~~~~-~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~----------- 63 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLD----RSEYTSLI-P---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----------- 63 (316)
T ss_dssp EEEECB-SSEEEEETT----SCCCEEEE-C---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred EEEECC-CeEEEEECC----CcceEehh-c---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC-----------
Confidence 444444 467888886 33332221 1 2456889999997776666655 5788888653210
Q ss_pred eEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eE
Q 005342 486 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LF 559 (701)
Q Consensus 486 i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l 559 (701)
.+......+ .........++++ +..|+.+. .+.|.++|.........+.........++++|.+ .+
T Consensus 64 -------~~~~~~~~~-~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 64 -------GVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp -----------CEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred -------CCcccEEEE-eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence 001000001 1112244677776 55555554 6899999986544333333334567899999966 44
Q ss_pred EEEeCC-CcEEEEeCCCCceEEee-cCCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342 560 AFGFDD-SSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 560 ~~gs~d-g~I~iwd~~~~~~~~~l-~~h~~~V~~v~~spdg~~l~s-~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~ 636 (701)
++.... +.|...++.. .....+ ...-...+.++++|++..|+. -+..+.|..+|+..... ..+.... +..
T Consensus 136 ~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~~~-~~~-- 208 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL-- 208 (316)
T ss_dssp EEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECT-TTT--
T ss_pred EEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEeecC-Ccc--
Confidence 444443 7899998754 333333 223346789999997766654 45567999999985431 2221111 111
Q ss_pred CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
....++++. .+..+++- ..+.|..++..+|+.+..+.
T Consensus 209 -~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 209 -AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp -SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 345677774 34444443 57889999988887666554
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.22 E-value=0.00014 Score=80.86 Aligned_cols=140 Identities=9% Similarity=-0.049 Sum_probs=92.5
Q ss_pred eEEEEeCCCCcEEEEecCCC----------CCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC-----
Q 005342 526 KISIFSLETFQTLATFANPP----------PIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----- 586 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~----------~~i~~l~~spdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~----- 586 (701)
.|..+|.++|+.+..++... .++ -+...++| .++.++.+|.++++|..+|+.+....-..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 69999999999988876321 111 12222456 36778899999999999998876554211
Q ss_pred --------CCe--------------------------EEEEEecCCCEEEEEe---------------------------
Q 005342 587 --------NRI--------------------------TCLAYSLSLNVLVSSG--------------------------- 605 (701)
Q Consensus 587 --------~~V--------------------------~~v~~spdg~~l~s~s--------------------------- 605 (701)
.++ ..++++|+..+++..+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2467888877666543
Q ss_pred ----------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeee
Q 005342 606 ----------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 606 ----------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l 674 (701)
.++.|+.||..+|+..-..... ..+.+......+..++++ .|+.++.||..+|+.+.++
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC----------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 3578999999998754332222 112222223345556665 7999999999999999888
Q ss_pred ee
Q 005342 675 LL 676 (701)
Q Consensus 675 ~~ 676 (701)
..
T Consensus 502 ~~ 503 (571)
T 2ad6_A 502 KM 503 (571)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.19 E-value=0.00032 Score=80.91 Aligned_cols=196 Identities=11% Similarity=-0.031 Sum_probs=104.8
Q ss_pred EEEEcCCCCeEEEEcCC-----CcEEEEeccccCCCCcee-EeecCCCCCCCCEEEEEEecCCCEEEEEECC---CcEEE
Q 005342 397 ESTSLPDADSAVCAKSL-----EKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKL 467 (701)
Q Consensus 397 ~l~~spdg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~-~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~v 467 (701)
.++|+|||+.|+....| ..|..+++. +++.. .+.... ........+.|||||++|+..+.+ ..+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg----t~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~ 299 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMG----KLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHL 299 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETT----SCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECC----CCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEE
Confidence 57899999988877665 257777775 33211 111111 122346788999999998876642 34444
Q ss_pred EecCCCCccccccccceeeEEeeCCCC--eE-EeecccCCCCCCeEEEEec-CCEEEEEe--C----CeEEEEeCCCCcE
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSK--LV-MTNDIAADPKDSISCFALR-GSHLFSAS--G----GKISIFSLETFQT 537 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~--~~-~~~~~~~~~~~~v~~l~~s-~~~l~s~s--d----g~I~iwd~~~~~~ 537 (701)
+|+ .++ .. +.. +.........++.|+ |+.|+..+ + ..|..+|+.++..
T Consensus 300 ~d~---------------------~~~~~~~~~~~-l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~ 357 (751)
T 2xe4_A 300 LDL---------------------RKGNAHNTLEI-VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD 357 (751)
T ss_dssp EES---------------------SSCTTCCCEEE-SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred EEC---------------------CCCCCCceeEE-eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence 544 332 12 011 223344566777766 76665544 3 3688888865322
Q ss_pred EEE-ecCCCC--CeEEEEEcCCCeEEEEeCCC--cEEEEeC-------CCCceEEeecC-CCCCeEEEEE----ecCCC-
Q 005342 538 LAT-FANPPP--IATYFILLPQDLFAFGFDDS--SILVHCP-------CTKKTKAKLKG-HQNRITCLAY----SLSLN- 599 (701)
Q Consensus 538 ~~~-~~~~~~--~i~~l~~spdg~l~~gs~dg--~I~iwd~-------~~~~~~~~l~~-h~~~V~~v~~----spdg~- 599 (701)
... +..+.. .+..+.+..+.++++...++ .|+++|+ .+++....+.- ....+..+.+ ++++.
T Consensus 358 ~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 437 (751)
T 2xe4_A 358 WSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPT 437 (751)
T ss_dssp CCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSC
T ss_pred ceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCE
Confidence 222 222333 34455554211667777777 4666775 34441333321 1122333332 34555
Q ss_pred EEEEEeCC---CeEEEEECCCCe
Q 005342 600 VLVSSGAD---AQLCVWDAVGWK 619 (701)
Q Consensus 600 ~l~s~s~D---~~I~vwd~~~g~ 619 (701)
++++.+.. ..++.+|+.+++
T Consensus 438 l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 438 FRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCCEEEEEECCCCc
Confidence 44444432 468888888875
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.18 E-value=0.00019 Score=79.92 Aligned_cols=141 Identities=9% Similarity=-0.045 Sum_probs=90.5
Q ss_pred eEEEEeCCCCcEEEEecCCCC---------CeEEEEEc-CCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC-----
Q 005342 526 KISIFSLETFQTLATFANPPP---------IATYFILL-PQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----- 586 (701)
Q Consensus 526 ~I~iwd~~~~~~~~~~~~~~~---------~i~~l~~s-pdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~----- 586 (701)
.|.-+|.++|+.+..++.... ...-+... .+| .++.++.+|.++++|.++|+.+....-..
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 899999999999888764321 11112222 455 46678899999999999998876543110
Q ss_pred --------CCe--------------------------EEEEEecCCCEEEEEe---------------------------
Q 005342 587 --------NRI--------------------------TCLAYSLSLNVLVSSG--------------------------- 605 (701)
Q Consensus 587 --------~~V--------------------------~~v~~spdg~~l~s~s--------------------------- 605 (701)
.++ ..++++|+..++++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 011 2457777766554421
Q ss_pred ------------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceee
Q 005342 606 ------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 606 ------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~ 672 (701)
.+|.+..||+.+|+.+-..... .+..+-.....+..++.+ .|+.++.||..+|+.+-
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3478999999998754433322 111111122245566665 79999999999999988
Q ss_pred eeee
Q 005342 673 QVLL 676 (701)
Q Consensus 673 ~l~~ 676 (701)
++..
T Consensus 509 ~~~l 512 (599)
T 1w6s_A 509 KFKI 512 (599)
T ss_dssp EEEC
T ss_pred EeeC
Confidence 7764
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.16 E-value=0.00014 Score=83.83 Aligned_cols=237 Identities=8% Similarity=-0.001 Sum_probs=125.7
Q ss_pred eEEEEEc-CCCCeEEEEcC-C----CcEEEEeccccCCCC-ceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----
Q 005342 395 SRESTSL-PDADSAVCAKS-L----EKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---- 463 (701)
Q Consensus 395 V~~l~~s-pdg~~l~s~s~-d----~~v~iw~~~~~~~~~-~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---- 463 (701)
+...+|| |||++||.+.. + ..|+++|+. ++ +...-.+ ......++|+|||+.|+....+.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~----~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS----DPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT----CTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC----CCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCC
Confidence 7789999 99999886543 2 259999997 44 3111000 11134678999999888877652
Q ss_pred -cEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe----CCeEEEEeCCCCc
Q 005342 464 -THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ 536 (701)
Q Consensus 464 -~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s----dg~I~iwd~~~~~ 536 (701)
.|..+++.++. ....++ +..........+.|+ |++|+..+ ...|+++|+.++.
T Consensus 247 ~~v~~~~lgt~~-----------------~~~~lv---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 247 NKVWRHVMGKLQ-----------------SEDVCL---YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EEEEEEETTSCG-----------------GGCEEE---EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred CEEEEEECCCCc-----------------hhcEEE---EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 34444432210 001122 111223345678888 77777654 2578999998752
Q ss_pred -EE--EEec-CCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEe-ecCCCC--CeEEEEEecCCC-EEEE
Q 005342 537 -TL--ATFA-NPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK-LKGHQN--RITCLAYSLSLN-VLVS 603 (701)
Q Consensus 537 -~~--~~~~-~~~~~i~~l~~spdg-~l~~gs~d----g~I~iwd~~~~~~~~~-l~~h~~--~V~~v~~spdg~-~l~s 603 (701)
.. ..+. .......++.|+.++ +++....+ ..|+.+|+.++..... +..|.. .+..+.+ ++. ++++
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~ 384 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA 384 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE
T ss_pred CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE
Confidence 22 3343 234445666655545 44454443 3688888765322222 223433 3344444 444 4556
Q ss_pred EeCCCe--EEEEEC-------CCCeeeeeeeeeeccCCCCCCCCCeEEEEE----cCCCCEEE-E--E--ecCeEEEEEC
Q 005342 604 SGADAQ--LCVWDA-------VGWKKLCSKFLHSFQTGLVPETTIVNHIQF----HPDQIHLL-S--I--HEGQIDVYEA 665 (701)
Q Consensus 604 ~s~D~~--I~vwd~-------~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~----spdg~~l~-s--g--~Dg~I~iwd~ 665 (701)
...++. |+++|+ .+++. ...+. ++ +. ..+..+.+ ++++..++ + + .-..+..+|+
T Consensus 385 ~~~~g~~~l~~~dl~~~~~~~~~g~~--~~~l~-l~-~~----~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 456 (751)
T 2xe4_A 385 GRRAGLTRIWTMMADSQDGVFKAGTG--LREVV-ME-EP----IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSP 456 (751)
T ss_dssp EEETTEEEEEEEECCTTTSCCCTTTC--CEECC-CC-CS----SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECT
T ss_pred EEeCCEEEEEEEecccccccccCCcc--ceEEC-CC-Cc----eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 666775 556665 33320 11222 21 11 22334433 34665443 3 2 2356888888
Q ss_pred CCCce
Q 005342 666 PTLNH 670 (701)
Q Consensus 666 ~~g~~ 670 (701)
.+++.
T Consensus 457 ~~~~~ 461 (751)
T 2xe4_A 457 QDHSR 461 (751)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 77763
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.16 E-value=0.00024 Score=78.91 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=83.8
Q ss_pred EEEEEe-CCeEEEEeCCCCcEEEEecCCC-------------CCe--------------------------EEEEEcCCC
Q 005342 518 HLFSAS-GGKISIFSLETFQTLATFANPP-------------PIA--------------------------TYFILLPQD 557 (701)
Q Consensus 518 ~l~s~s-dg~I~iwd~~~~~~~~~~~~~~-------------~~i--------------------------~~l~~spdg 557 (701)
.++.++ +|.++++|..+|+.+..+.... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 466677 8999999999999887664221 011 246788887
Q ss_pred -eEEEEe-------------------------------------CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCC
Q 005342 558 -LFAFGF-------------------------------------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 599 (701)
Q Consensus 558 -~l~~gs-------------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~ 599 (701)
.+++++ .+|.|+.||..+++.+-++... ..+........+.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg 476 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC
Confidence 555543 3578999999999987776532 2333333344566
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 600 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 600 ~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
.++.++.|+.++.||.++|+.+....+. .+.. ..+ +.+..+|+.+++.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~---~~~~--~~p---~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKMP---SGGI--GSP---MTYSFKGKQYIGS 524 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECS---SCCC--SCC---EEEEETTEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeCC---CCcE--eee---EEEEECCEEEEEE
Confidence 7777999999999999999755433222 1111 022 3466788766653
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.14 E-value=0.00077 Score=65.99 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=122.2
Q ss_pred CCCCCCCCEEEEEEecCCCEEEE-EECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe
Q 005342 436 PDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 514 (701)
Q Consensus 436 ~~~~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~ 514 (701)
+..+-...+..++|+|++..|++ ...++.|...| +. +.+... +.-+-....-.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld---------------------~~-g~v~~~-i~l~g~~D~EGIa~ 77 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMT---------------------TN-GDLIRT-IPLDFVKDLETIEY 77 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEE---------------------TT-CCEEEE-EECSSCSSEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEe---------------------CC-CCEEEE-EecCCCCChHHeEE
Confidence 33345568999999998776665 44566666664 44 444432 11122246778888
Q ss_pred c-CCEEEEEe--CCeEEEEeCCCCcE---EEEec------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---CCce
Q 005342 515 R-GSHLFSAS--GGKISIFSLETFQT---LATFA------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TKKT 578 (701)
Q Consensus 515 s-~~~l~s~s--dg~I~iwd~~~~~~---~~~~~------~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~---~~~~ 578 (701)
. +..++.++ ++.+.++++..... +.... ........++++|++ .++++.+.....+|.+. ....
T Consensus 78 ~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 78 IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 8 44444444 68899998765432 22222 123446899999999 66666655444444432 1111
Q ss_pred EEeec-------CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCC---CCCCeEEEEEcC
Q 005342 579 KAKLK-------GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---ETTIVNHIQFHP 647 (701)
Q Consensus 579 ~~~l~-------~h~~~V~~v~~spd-g~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~---~~~~v~~v~~sp 647 (701)
+..+. .+...+.+++++|. +++++.......+.++|.... .+.... +..+..+ .-.....|+|.|
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~---L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMS---LTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEE---CSTTGGGCSSCCCSEEEEEECT
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEE---cCCccCCcccccCCCCeeEECC
Confidence 22221 13346789999994 556677777889999997753 332222 3333210 003568999999
Q ss_pred CCCEEEEEecCeEEEEECCC
Q 005342 648 DQIHLLSIHEGQIDVYEAPT 667 (701)
Q Consensus 648 dg~~l~sg~Dg~I~iwd~~~ 667 (701)
+|++.+++..+.++++.-..
T Consensus 234 ~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 234 SGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp TCCEEEEETTTEEEEEEC--
T ss_pred CCCEEEEcCCceEEEEEecC
Confidence 99988888777777776543
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.04 E-value=0.0019 Score=65.52 Aligned_cols=206 Identities=10% Similarity=-0.062 Sum_probs=122.5
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEE
Q 005342 442 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 519 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l 519 (701)
.....++|+++|+.+++-..++.|..||. .++.... +. ....+..++++ |+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~---------------------~g~~~~~--~~--~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITP---------------------DGNQQIH--AT--VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT---------------------TCCEEEE--EE--CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECC---------------------CCceEEE--Ee--CCCCceeEEEcCCCcEE
Confidence 45778999999986555556788888754 3322111 11 12457788998 6654
Q ss_pred EEEe-C--CeEEEEeCCCCcEEEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEee---------cC
Q 005342 520 FSAS-G--GKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKL---------KG 584 (701)
Q Consensus 520 ~s~s-d--g~I~iwd~~~~~~~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~-~~~l---------~~ 584 (701)
++.. . ..|..+|..+++....... .......++..+++ .+++...++.|+.+|..+++. +... .+
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4443 2 2577788878775433321 12233556666666 555555688999999876421 1100 01
Q ss_pred CCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCC-CeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEE
Q 005342 585 HQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 661 (701)
Q Consensus 585 h~~~V~~v~~spdg~~l-~s~s~D~~I~vwd~~~-g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~ 661 (701)
.-...+.+ +|++++| ++-+..++|+++++.. |.......+... .....++++++|++.++. ..+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--------~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--------TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--------CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--------CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 8888755 4555678999999875 432111112111 234568899999876664 578899
Q ss_pred EEECCCCceee--eeee----eeEEEEE
Q 005342 662 VYEAPTLNHTS--QVLL----ISHIMFV 683 (701)
Q Consensus 662 iwd~~~g~~~~--~l~~----i~~~~fs 683 (701)
++|.. |+... .+.. .++++|.
T Consensus 237 ~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred EECCC-CCEEEEeecccccCCceEEEEe
Confidence 99974 76532 2332 6777776
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.04 E-value=0.00048 Score=78.14 Aligned_cols=232 Identities=7% Similarity=-0.045 Sum_probs=125.6
Q ss_pred EEEEEcCCCCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEE-CC-----CcEEEE
Q 005342 396 RESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QT-----ATHKLW 468 (701)
Q Consensus 396 ~~l~~spdg~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~d-----g~i~vw 468 (701)
.++++.++|+.++.|+. +..+.+||.. +.+...+. +... ...-.+++..++|+.++.|+ .+ ..+.+|
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~----t~~W~~~~-~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSS----SDSWIPGP-DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGG----GTEEEECC-CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCc----CCceeECC-CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 35778899999999984 4689999987 44433322 1111 11123455667999888888 34 456777
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCC-------CCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEE
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-------PKDSISCFALR-GSHLFSASGGKISIFSLETFQTLAT 540 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~ 540 (701)
|..++.. ........ ..+... +...+..+... |..+..+....+..||..+......
T Consensus 320 d~~t~~W--------------~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~ 384 (656)
T 1k3i_A 320 SPSSKTW--------------TSLPNAKV-NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 384 (656)
T ss_dssp ETTTTEE--------------EEETTSCS-GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred CCCCCcc--------------eeCCCccc-cccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence 6544321 10000000 000000 11222222222 3333222245788999887664332
Q ss_pred ecCCC---------CCeEEEEEcC-CC-eEEEEeCCC-----------cEEEEeCCCCceEEee--cCCCCCe-EEEEEe
Q 005342 541 FANPP---------PIATYFILLP-QD-LFAFGFDDS-----------SILVHCPCTKKTKAKL--KGHQNRI-TCLAYS 595 (701)
Q Consensus 541 ~~~~~---------~~i~~l~~sp-dg-~l~~gs~dg-----------~I~iwd~~~~~~~~~l--~~h~~~V-~~v~~s 595 (701)
...+. ..-.++.+.. ++ .+++|+.++ .|.+||..+....... ..+.... .+++..
T Consensus 385 ~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l 464 (656)
T 1k3i_A 385 AGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVL 464 (656)
T ss_dssp EEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEEC
T ss_pred CCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEEC
Confidence 22111 1234455544 56 777777532 6888998877654433 1122222 344666
Q ss_pred cCCCEEEEEeCC-----------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 596 LSLNVLVSSGAD-----------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 596 pdg~~l~s~s~D-----------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
|++++++.|+.+ ..+.+||..+++-.. +....... .......+.|||+.++.|
T Consensus 465 ~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~~~R----~~hs~a~ll~dg~v~v~G 528 (656)
T 1k3i_A 465 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIVR----VYHSISLLLPDGRVFNGG 528 (656)
T ss_dssp TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSSCC----CTTEEEEECTTSCEEEEE
T ss_pred CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCCCcc----ccccHhhcCCCcEEEecC
Confidence 899999998854 568999998864222 22121111 233455677999999986
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.02 E-value=0.02 Score=60.30 Aligned_cols=235 Identities=10% Similarity=-0.010 Sum_probs=138.7
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~ 484 (701)
+|+.+.. ..|+..++. ......+. .....+..++|++.+..|+.+.. ++.|..+++....
T Consensus 85 ~ll~~~~-~~I~~i~l~----~~~~~~~~----~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~---------- 145 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLD----RSEYTSLI----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH---------- 145 (400)
T ss_dssp EEEEEET-TEEEEECTT----SCSCEEEE----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred eeEEecc-ceeEEEccC----CcceeEec----cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC----------
Confidence 4444433 677777876 33322222 13467899999997777766655 5777777653210
Q ss_pred eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (701)
Q Consensus 485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l 559 (701)
.......+ + .........++++ +..|+.+. .+.|.+.|+........+.........++++|.+ .|
T Consensus 146 -----~~~~~~~~---~-~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 146 -----GVSSYDTV---I-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp -------CCCEEE---E-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred -----CCCcceEE---E-eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 00001111 1 1223456778887 56666555 6899999997655444444344557899999966 44
Q ss_pred EEEe-C-CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342 560 AFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 560 ~~gs-~-dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~ 636 (701)
+... . .+.|...++............-...+.++++|++..|+.+ +..+.|..+|+..... ..+.... +..
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~-~~l-- 290 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL-- 290 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECS-STT--
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCC-CCC--
Confidence 4433 3 4789999986543333333333567999999977766554 4567999999876432 1221111 111
Q ss_pred CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
....++++. .+.++.+- ..+.|..+|..+|+.+..+..
T Consensus 291 -~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 291 -AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp -SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred -CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 334567763 23333343 577899999888887776654
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.96 E-value=0.0073 Score=59.00 Aligned_cols=203 Identities=7% Similarity=0.011 Sum_probs=121.5
Q ss_pred CCCc-eEEEEEcCCCCeEEE-EcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 005342 391 DNNQ-SRESTSLPDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 468 (701)
Q Consensus 391 ~h~~-V~~l~~spdg~~l~s-~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 468 (701)
+-.. +..++|.|++..|++ ...++.|...|.. ......+. .. .......+++.+++.++++.-.++.+.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~----g~v~~~i~--l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN----GDLIRTIP--LD-FVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT----CCEEEEEE--CS-SCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC----CCEEEEEe--cC-CCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 4434 899999998765554 6667777777774 22223332 22 23578889999999866665557888888
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecc-cCCCCCCeEEEEec--CCEEEEEe--CC-eEEEEeC-CCCcEEEEe
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSAS--GG-KISIFSL-ETFQTLATF 541 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~v~~l~~s--~~~l~s~s--dg-~I~iwd~-~~~~~~~~~ 541 (701)
++..... + +.. ......+ ..........++++ ++.|+++. +. .|+.|+- .....+..+
T Consensus 97 ~v~~~~~-----i-------~~~---~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~ 161 (255)
T 3qqz_A 97 SLTPNSE-----V-------KIL---KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS 161 (255)
T ss_dssp EECTTCC-----E-------EEE---EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred EcCCCCe-----e-------eee---eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence 7633210 0 000 0000001 11234567899998 65666666 33 5566651 111122222
Q ss_pred c-------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCC---------CCeEEEEEecCCCEEEE
Q 005342 542 A-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---------NRITCLAYSLSLNVLVS 603 (701)
Q Consensus 542 ~-------~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~v~~spdg~~l~s 603 (701)
. .....+.+++++|.. +++....+..+..+|.. ++.+..+.-.. .....|+|.|+|++.+
T Consensus 162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI- 239 (255)
T 3qqz_A 162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI- 239 (255)
T ss_dssp ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-
T ss_pred cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-
Confidence 1 123356899999987 66677777889999965 55655443211 2568899999998554
Q ss_pred EeCCCeEEEEECCC
Q 005342 604 SGADAQLCVWDAVG 617 (701)
Q Consensus 604 ~s~D~~I~vwd~~~ 617 (701)
.|+.+.++++....
T Consensus 240 vsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 240 VSEPNRFYRFTPQS 253 (255)
T ss_dssp EETTTEEEEEEC--
T ss_pred EcCCceEEEEEecC
Confidence 47888888886544
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.95 E-value=0.00083 Score=74.73 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeC
Q 005342 524 GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFD 564 (701)
Q Consensus 524 dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~spdg-~l~~gs~ 564 (701)
+|.|+-+|.++|+.+.++...... + ..+++.++. .++.++.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 589999999999998877633211 0 145677777 7777766
Q ss_pred C----------------CcEEEEeCCCCceEEeecC--CC--------CCeEEEEEe-cCC---CEEEEEeCCCeEEEEE
Q 005342 565 D----------------SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSL---NVLVSSGADAQLCVWD 614 (701)
Q Consensus 565 d----------------g~I~iwd~~~~~~~~~l~~--h~--------~~V~~v~~s-pdg---~~l~s~s~D~~I~vwd 614 (701)
+ +.|..+|.++|+.+-.++. |. .++. +... .+| ..++.++.+|.+++.|
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEE
Confidence 5 3899999999998876654 21 1121 2222 567 5677899999999999
Q ss_pred CCCCeeeeee
Q 005342 615 AVGWKKLCSK 624 (701)
Q Consensus 615 ~~~g~~~~~~ 624 (701)
..+|+.+...
T Consensus 340 ~~tG~~lw~~ 349 (599)
T 1w6s_A 340 RTDGALVSAN 349 (599)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEeecc
Confidence 9999866443
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.94 E-value=0.0024 Score=70.99 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEE
Q 005342 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 644 (701)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~ 644 (701)
+|.|+.||+.+++.+-+...+ .++..-.....+.+++.++.|+.++.||.++|+.+-...+. .+. ...-+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~---~g~-----~a~P~~ 535 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---SGI-----VSPPIT 535 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCC-----CSCCEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC---CCc-----ccCceE
Confidence 578999999999987665532 22222222234667888999999999999999765433322 221 112256
Q ss_pred EcCCCCEEEE
Q 005342 645 FHPDQIHLLS 654 (701)
Q Consensus 645 ~spdg~~l~s 654 (701)
|..+|+..++
T Consensus 536 y~~~G~qYv~ 545 (582)
T 1flg_A 536 WEQDGEQYLG 545 (582)
T ss_dssp EEETTEEEEE
T ss_pred EEECCEEEEE
Confidence 6778875554
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.89 E-value=0.0002 Score=81.23 Aligned_cols=241 Identities=7% Similarity=0.010 Sum_probs=132.1
Q ss_pred EEEEcC-CCCeEEEEcCCC-----------cEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEEC-C
Q 005342 397 ESTSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-T 462 (701)
Q Consensus 397 ~l~~sp-dg~~l~s~s~d~-----------~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~-d 462 (701)
..++.| +|+.++.|+.+. .+.+||.. +++...+. ++. .+.....++++.++|+.++.|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~----t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS----TGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT----TCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC----CCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCCCC
Confidence 466777 889989887543 57888887 44433322 111 12233445778899999888885 4
Q ss_pred CcEEEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec-CCEEEEEe--C-----CeEEEEeCC
Q 005342 463 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLE 533 (701)
Q Consensus 463 g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s-~~~l~s~s--d-----g~I~iwd~~ 533 (701)
+.+.+||..+ ++.... .+. ..........+. |+.++.|+ + ..+.+||..
T Consensus 265 ~~v~~yd~~t---------------------~~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 265 KKTSLYDSSS---------------------DSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp TCEEEEEGGG---------------------TEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CceEEecCcC---------------------CceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 5777776533 321110 011 122223344453 77777776 3 468999998
Q ss_pred CCcEEEEe----cCCCCCeEEEEEcCCC-eEEEEeCCC---------cEEEEeCCCCceEEeecCCC---------CCeE
Q 005342 534 TFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDS---------SILVHCPCTKKTKAKLKGHQ---------NRIT 590 (701)
Q Consensus 534 ~~~~~~~~----~~~~~~i~~l~~spdg-~l~~gs~dg---------~I~iwd~~~~~~~~~l~~h~---------~~V~ 590 (701)
+++-...- ......-....+..++ .++.|+.+| .+..||..+.........+. ..-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 77533220 0000000011223445 445554443 56788887765443322121 1234
Q ss_pred EEEEec-CCCEEEEEeCCC-----------eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ec
Q 005342 591 CLAYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 657 (701)
Q Consensus 591 ~v~~sp-dg~~l~s~s~D~-----------~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~D 657 (701)
++.|.. ++++++.|+.++ .|.+||..+..-.... ...++.. ..-.+....|+|++++.| .+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBS
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcc
Confidence 555654 777888887532 6888888875421111 0012111 112345667899999985 32
Q ss_pred -----------CeEEEEECCCCce
Q 005342 658 -----------GQIDVYEAPTLNH 670 (701)
Q Consensus 658 -----------g~I~iwd~~~g~~ 670 (701)
..+.+||..+++-
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred cCcCcCCCCcccceEEEcCCCCce
Confidence 4689999977653
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.85 E-value=0.0033 Score=69.86 Aligned_cols=141 Identities=10% Similarity=-0.024 Sum_probs=90.9
Q ss_pred CeEEEEeCCCCcEEEEecC--CC--------CCeEEEEEc-CCC----eEEEEeCCCcEEEEeCCCCceEEeecCCC---
Q 005342 525 GKISIFSLETFQTLATFAN--PP--------PIATYFILL-PQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQ--- 586 (701)
Q Consensus 525 g~I~iwd~~~~~~~~~~~~--~~--------~~i~~l~~s-pdg----~l~~gs~dg~I~iwd~~~~~~~~~l~~h~--- 586 (701)
+.|.-+|..+|+.+..++. |. .++ -+... .+| .++.++.+|.++++|..+|+.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999999988753 21 111 11221 455 57789999999999999998876554321
Q ss_pred ----------CC--------------------------------eEEEEEecCCCEEEEEe-------------------
Q 005342 587 ----------NR--------------------------------ITCLAYSLSLNVLVSSG------------------- 605 (701)
Q Consensus 587 ----------~~--------------------------------V~~v~~spdg~~l~s~s------------------- 605 (701)
.+ -..++++|+..+++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 01346677555444322
Q ss_pred --------------CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCce
Q 005342 606 --------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 670 (701)
Q Consensus 606 --------------~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~ 670 (701)
.+|.|+.||+.+|+..-..... .++..-.....+..++.+ .|+.++.||.++|+.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~----------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH----------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES----------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC----------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 3688999999999755433322 111111112235566666 799999999999999
Q ss_pred eeeeee
Q 005342 671 TSQVLL 676 (701)
Q Consensus 671 ~~~l~~ 676 (701)
+..+..
T Consensus 520 lW~~~~ 525 (582)
T 1flg_A 520 LWKFQT 525 (582)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 988875
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.78 E-value=0.046 Score=55.76 Aligned_cols=248 Identities=8% Similarity=-0.009 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 473 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 473 (701)
+.++.|.+++..+++| .++.| +...+ .++.+... .+.......+.++.+++ +. +++++.+|.+..-
T Consensus 38 ~~~v~~~~~~~~~~~G-~~g~i-~~s~D----gG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~S----- 104 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVG-VNATL-METRD----GGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLHT----- 104 (327)
T ss_dssp EEEEEESSSSCEEEEE-TTTEE-EEESS----TTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEEE-----
T ss_pred EEEEEECCCCcEEEEc-CCCeE-EEeCC----CCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEEE-----
Confidence 8889998888888855 45654 33333 44434322 21111244688999986 44 4445556644432
Q ss_pred CccccccccceeeEEeeCCCCeEEeec-ccCCCCCCeEEEEec--CCEEEEEeCCeEEEEeCCCCcEE-EEecCCCCCeE
Q 005342 474 KQSLEEENVNMESQLYQPSSKLVMTND-IAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTL-ATFANPPPIAT 549 (701)
Q Consensus 474 ~~~~g~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~~-~~~~~~~~~i~ 549 (701)
.+.|+-.... ....+...+..+.+. +..++++.+|.|..- ...|+.- ....+....+.
T Consensus 105 -----------------~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 105 -----------------TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMR 166 (327)
T ss_dssp -----------------SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEE
T ss_pred -----------------CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceE
Confidence 1222211110 000122446677766 444554446654321 2223322 22233456788
Q ss_pred EEEEcCCC-eEEEEeCCCcEEE-EeC--CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 550 YFILLPQD-LFAFGFDDSSILV-HCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 550 ~l~~spdg-~l~~gs~dg~I~i-wd~--~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
.+++.|++ +++++. +|.++. .|- .+-+.+. .+....+..++++|++..++ ++.+|.+++++...|+.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t----- 237 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN----- 237 (327)
T ss_dssp EEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-----
T ss_pred EEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-----
Confidence 99999999 776664 455444 442 2223332 23456788999999987654 55678888775333321
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeee------e-eeEEEEE
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVL------L-ISHIMFV 683 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~------~-i~~~~fs 683 (701)
...+.....+....+.++.+.|++..++++.++.+ .+....|+.-..+. . +.++.|.
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 11111110001145889999999998888888877 45555565444332 2 6666664
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.76 E-value=0.017 Score=58.96 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
+..+.|+| +..++ ++.++.|.. ..+ .++.+............+..+.+.+++..+++ +.+|.+..-
T Consensus 82 ~~~i~~~~-~~~~~-~g~~g~i~~-S~D----gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S------ 147 (327)
T 2xbg_A 82 FNSVSFQG-NEGWI-VGEPPIMLH-TTD----GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRT------ 147 (327)
T ss_dssp EEEEEEET-TEEEE-EEETTEEEE-ESS----TTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEE------
T ss_pred EEEEEecC-CeEEE-EECCCeEEE-ECC----CCCCceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEE------
Confidence 78888986 44444 445564433 222 44444422111112345788888877765544 455644321
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeCCeEEE-EeC--CCCcEEEEecCCCCCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISI-FSL--ETFQTLATFANPPPIAT 549 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sdg~I~i-wd~--~~~~~~~~~~~~~~~i~ 549 (701)
.+.|.-... ........+..+++. +.+++++.+|.+.. .|- .+.+.+. ......+.
T Consensus 148 ----------------~DgG~tW~~-~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~ 208 (327)
T 2xbg_A 148 ----------------KDSGKNWQA-LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLH 208 (327)
T ss_dssp ----------------SSTTSSEEE-EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEE
T ss_pred ----------------cCCCCCCEE-eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccc
Confidence 122221111 112344568888887 66666665555444 442 2223332 23456788
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-C---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 005342 550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-G---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 625 (701)
Q Consensus 550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-~---h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~ 625 (701)
.+++++++.+++++.+|.+++.+...++.-..+. + +...+.++++.|++..++++. ++.| .+....|+. -..
T Consensus 209 ~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t--W~~ 284 (327)
T 2xbg_A 209 NMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT--WQQ 284 (327)
T ss_dssp EEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS--CEE
T ss_pred eeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc--cEE
Confidence 9999998833345567888877433344333222 1 223588999998888766554 6766 344554531 111
Q ss_pred eeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEEC
Q 005342 626 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 665 (701)
Q Consensus 626 l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~ 665 (701)
+. ...... ..+.++.|.+++..+++|.+|.|.-++-
T Consensus 285 ~~-~~~~~~---~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 DV-DVKKVP---SNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CG-GGTTSS---SCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cC-ccCCCC---CCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 21 111111 5678899987778777789998776653
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0094 Score=63.55 Aligned_cols=237 Identities=9% Similarity=0.027 Sum_probs=130.3
Q ss_pred eEEEEEcC-CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECC-C----cEEEE
Q 005342 395 SRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-A----THKLW 468 (701)
Q Consensus 395 V~~l~~sp-dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g----~i~vw 468 (701)
...++++| ++..|..+...+.|..+|+. .+....+.. .......++|+++|++|+++... + .+.+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~----~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFE----KEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETT----TTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECC----CCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 56889998 45556655554788888886 544444321 34568899999999966666552 2 22222
Q ss_pred ecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecC-
Q 005342 469 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN- 543 (701)
Q Consensus 469 d~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~- 543 (701)
+... .. .....+.. ......++++ +..|+.+. ++.|..+|..++........
T Consensus 211 ~~~g------~~-----------~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 211 TRES------GF-----------KVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp EGGG------TS-----------CSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred eCCC------ce-----------eeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 2110 00 00011110 1234466676 34455444 68999999977654222221
Q ss_pred CCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCC--Cce--EEeecCC---------------CCCeE-EEEEe------
Q 005342 544 PPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT--KKT--KAKLKGH---------------QNRIT-CLAYS------ 595 (701)
Q Consensus 544 ~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~~--~~~--~~~l~~h---------------~~~V~-~v~~s------ 595 (701)
.......++++|+| +++ +-...+.|+.++... +.. +..+.+. -.... .++..
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~ 347 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKG 347 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTT
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccc
Confidence 22346799999999 554 445677899987653 221 1222211 01123 45553
Q ss_pred --cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec----cCCC-C------CCCCCeEEEEEcCC-CCEEEEE-ecCeE
Q 005342 596 --LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF----QTGL-V------PETTIVNHIQFHPD-QIHLLSI-HEGQI 660 (701)
Q Consensus 596 --pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~----~~~~-~------~~~~~v~~v~~spd-g~~l~sg-~Dg~I 660 (701)
++|.+.++-...+.|+.++ ..|... .+... ..+. . ..-.....++++|+ +.++++- ..+.|
T Consensus 348 ~D~~g~lyvaD~~n~~I~~i~-~~G~v~---~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 348 SSDEYDFYFCDRENHCIRILT-PQGRVT---TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp SSCCEEEEEEEGGGTEEEEEC-TTSEEE---EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred cCCCCeEEEEECCCcEEEEEC-CCCcEE---EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 3466666666678899988 445322 11100 0010 0 00035789999995 5444443 56778
Q ss_pred EEEECC
Q 005342 661 DVYEAP 666 (701)
Q Consensus 661 ~iwd~~ 666 (701)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 887764
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.74 E-value=0.026 Score=57.36 Aligned_cols=224 Identities=10% Similarity=-0.016 Sum_probs=129.4
Q ss_pred CcEEEEeccccCCCCc-eeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeC
Q 005342 414 EKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQP 491 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~-~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~ 491 (701)
..|+..++.. .. ...+.. .....+.++.|.+.+..|..+.. .+.|..++..+..
T Consensus 13 ~~I~~i~l~~----~~~~~~~~~---~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~----------------- 68 (318)
T 3sov_A 13 RDLRLVDATN----GKENATIVV---GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE----------------- 68 (318)
T ss_dssp EEEEEEETTC----TTSCCEEEE---EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-----------------
T ss_pred CeEEEEECCC----CceEEEEEe---cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-----------------
Confidence 5688888862 21 111111 01245778999987666665554 6777777653210
Q ss_pred CCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe--C
Q 005342 492 SSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF--D 564 (701)
Q Consensus 492 ~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs--~ 564 (701)
....++. ..-.....++++ +..|+.+. .+.|.++++........+.........++++|.+ .++... .
T Consensus 69 ~~~~~~~-----~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 69 SVQNVVV-----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp CCCEEEE-----ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred ceEEEEc-----CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 0001111 111234567776 55555554 6899999986543333333344567899999976 544444 3
Q ss_pred CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEE
Q 005342 565 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 643 (701)
Q Consensus 565 dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~-s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v 643 (701)
.+.|+..++............-...+.++++|++..|+ +-+..+.|..+|+..... ..+. .+.. ....++
T Consensus 144 ~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~---~~~~---~~P~gl 214 (318)
T 3sov_A 144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVV---KGSL---PHPFAL 214 (318)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE---CSCC---SCEEEE
T ss_pred CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce---EEEe---cCCC---CCceEE
Confidence 57899998764332222222234578999999666554 445678999999875431 1121 1121 445677
Q ss_pred EEcCCCCEEEEE-ecCeEEEEECCCCceeeeeee
Q 005342 644 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 644 ~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
++.. +..+.+- ..+.|..++..+|+..+.+..
T Consensus 215 av~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 215 TLFE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 7753 3333343 578899999988887666543
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.69 E-value=0.02 Score=59.95 Aligned_cols=194 Identities=8% Similarity=-0.039 Sum_probs=118.0
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCC
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~ 472 (701)
+..++|++.+. ++++-...+.|..++.. .+....+.. ........+++.+.+..|+.+.. .+.|.+.+++.
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~----g~~~~~~~~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLN----GSNVEEVVS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT----SCCEEEEEC---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecC----CCCcEEEEe---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 67899997655 44555567888888886 333333221 11234567888886666655544 56677665421
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C-CeEEEEeCCCCcEEEEecCCCCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d-g~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
. ....+ + .........++++ +..|+.+. . +.|..+++............-..
T Consensus 191 ~-------------------~~~~l---~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~ 247 (386)
T 3v65_B 191 A-------------------HRKVL---L-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 247 (386)
T ss_dssp C-------------------SCEEE---E-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred C-------------------ceEEe---e-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence 1 11111 1 1223456788888 55555554 4 78999998543332222323345
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 548 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 548 i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
...++++|++ ++++-+..+.|..+|+........+.........+++ ..+.++++....+.|..+|..+|+
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 6899999876 5555566778999998754333333333445678888 445566666778899999977764
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.69 E-value=0.028 Score=57.94 Aligned_cols=153 Identities=8% Similarity=-0.027 Sum_probs=101.4
Q ss_pred CCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 005342 507 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 580 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~ 580 (701)
..+..++|+ ++.|+.+. .+.|+.+++..+.....+.........+++++.+ ++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347788988 56666655 6899999997665444333233445789999865 55666677899999987544333
Q ss_pred eecCCCCCeEEEEEecCCCEE-EEEeCC-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--e
Q 005342 581 KLKGHQNRITCLAYSLSLNVL-VSSGAD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 656 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l-~s~s~D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~ 656 (701)
.+...-...+.++++|.+..| ++-... +.|...++..... ..+ ..... ...+.++++|++..|+.+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~---~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RII---ADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EES---CCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EEE---EECCC---CCcceEEEeCCCCEEEEEECC
Confidence 333333567899999965544 444445 7899999876421 111 11111 557899999988777765 4
Q ss_pred cCeEEEEECCCC
Q 005342 657 EGQIDVYEAPTL 668 (701)
Q Consensus 657 Dg~I~iwd~~~g 668 (701)
.+.|..+|+...
T Consensus 224 ~~~I~~~~~dG~ 235 (349)
T 3v64_C 224 HHVIERANLDGS 235 (349)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEeCCCC
Confidence 678999998643
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.036 Score=63.52 Aligned_cols=234 Identities=10% Similarity=-0.011 Sum_probs=135.1
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~ 484 (701)
+|+.+.. ..|+..++. ......+.. ....+..++|.+.+..|+.... .+.|+.+++.....
T Consensus 397 ~Ll~an~-~~Ir~i~l~----~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~--------- 458 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLD----RSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------- 458 (791)
T ss_dssp EEEEECB-SSEEEECTT----SCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred ccccccc-cceeEeecc----CCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC---------
Confidence 3443333 557777765 333333221 3467889999986666665554 57777776532100
Q ss_pred eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (701)
Q Consensus 485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l 559 (701)
......+ + .........++++ ++.|+.+. .+.|.+.++........+.........|+++|.+ .|
T Consensus 459 ------~~~~~~v---i-~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 459 ------VSSYDTV---I-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp ---------CEEE---E-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred ------CcceeEE---E-ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCE
Confidence 0001111 1 1123345678887 66666665 6899999996554433333344567899999975 44
Q ss_pred -EEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342 560 -AFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 560 -~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~ 636 (701)
++-..+ +.|...++........+...-...+.|++++.+..|+.+ ...+.|...++...... ..+. - .+..
T Consensus 529 YwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--~v~~-~-~~~l-- 602 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--TILE-D-EKRL-- 602 (791)
T ss_dssp EEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEE-C-TTTT--
T ss_pred EEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--EEec-C-CCcc--
Confidence 443333 789999986544433333333578999999876655544 45678999998764321 1111 1 0111
Q ss_pred CCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCceeeeeee
Q 005342 637 TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 637 ~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
....+|++. +..|+.. ..+.|...|..+|+.+..+..
T Consensus 603 -~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 603 -AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp -SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -CCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 234566664 3455554 567888888888877666643
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.64 E-value=0.026 Score=60.06 Aligned_cols=236 Identities=10% Similarity=0.003 Sum_probs=131.8
Q ss_pred eEEEEEcCC--CCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC----c-EEE
Q 005342 395 SRESTSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----T-HKL 467 (701)
Q Consensus 395 V~~l~~spd--g~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~-i~v 467 (701)
...++|+|+ +..|..+...+.|+.++.. .+....+.. .......++++++|+ |+.+...+ . +..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~----~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFV----NQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETT----TTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECC----CCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence 568999995 4445444444889999986 555444321 345689999999999 55544422 1 222
Q ss_pred EecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEe-c
Q 005342 468 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATF-A 542 (701)
Q Consensus 468 wd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~-~ 542 (701)
.+.... . ....... .......++++ +..|+.+. ++.|+.+|..++.....+ .
T Consensus 212 ~~~~~~------~-----------~~~~~~~------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 212 FTRASG------F-----------TERLSLC------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp ECGGGT------T-----------CCEEEEE------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred EECCCC------e-----------ecccccc------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence 211000 0 0001111 11233455666 34455444 689999999877652222 2
Q ss_pred C-CCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCC--CCce--EEeecCC---------------CCCeEEEEE------
Q 005342 543 N-PPPIATYFILLPQD-LFA-FGFDDSSILVHCPC--TKKT--KAKLKGH---------------QNRITCLAY------ 594 (701)
Q Consensus 543 ~-~~~~i~~l~~spdg-~l~-~gs~dg~I~iwd~~--~~~~--~~~l~~h---------------~~~V~~v~~------ 594 (701)
. .......++++|+| .|+ +-...+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y 348 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY 348 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence 1 22233579999999 554 44556789998765 3321 1122221 123567899
Q ss_pred ---ecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeecc----CCCCC-------CCCCeEEEEEc-CCCCEEEEE-ecC
Q 005342 595 ---SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ----TGLVP-------ETTIVNHIQFH-PDQIHLLSI-HEG 658 (701)
Q Consensus 595 ---spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~----~~~~~-------~~~~v~~v~~s-pdg~~l~sg-~Dg 658 (701)
.++|.+.++-...+.|+.++. +|... .+.... .+... .-.....|+++ ++|.++++- ..+
T Consensus 349 ~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~---t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 349 AGEEDEYDFYFCDRDSHTVRVLTP-EGRVT---TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp TTSSCCEEEEEEETTTTEEEEECT-TSEEE---EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cccCCCCcEEEEECCCCEEEEECC-CCCEE---EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 677877777777889999985 45321 111000 00000 01346789999 556555553 577
Q ss_pred eEEEEECC
Q 005342 659 QIDVYEAP 666 (701)
Q Consensus 659 ~I~iwd~~ 666 (701)
.|+.++++
T Consensus 425 rIr~i~~e 432 (433)
T 4hw6_A 425 RVRKIAPE 432 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 78887764
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.58 E-value=0.079 Score=53.63 Aligned_cols=152 Identities=9% Similarity=-0.034 Sum_probs=97.3
Q ss_pred CCeEEEEec--CCEEEEEe--CCeEEEEeCCC----CcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 005342 507 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 576 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~ 576 (701)
..+..++|+ ++.|+.+. ++.|..+++.+ ......+...-.....+++++.+ ++++-..++.|.++|....
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 457788998 56666665 68999999875 22222232222345789999755 5566677889999998754
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 577 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 577 ~~~~~l~~h~~~V~~v~~spdg~~l~s~s~-D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.....+...-.....++++|.+..|+.+.. . +.|...++..... ..+. .... ...+.++++|++..|+.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~---~~~~---~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV---TENI---QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEE---ECCC---CCceEEEEeccCCEEEE
Confidence 433333323346789999996665544443 3 7899988865321 1121 1111 56789999998887776
Q ss_pred E--ecCeEEEEECCC
Q 005342 655 I--HEGQIDVYEAPT 667 (701)
Q Consensus 655 g--~Dg~I~iwd~~~ 667 (701)
+ ..+.|..+|+..
T Consensus 181 ~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 181 VDSKLHSISSIDVNG 195 (316)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EECCCCeEEEEecCC
Confidence 5 467899999864
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.028 Score=57.09 Aligned_cols=185 Identities=11% Similarity=0.141 Sum_probs=115.6
Q ss_pred CCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC----CCE--EEEEEC----CCcEEEEecCC
Q 005342 403 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDF--LVALTQ----TATHKLWKWQS 472 (701)
Q Consensus 403 dg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd----g~~--l~s~s~----dg~i~vwd~~~ 472 (701)
....++.....+.+.++|+. ......+. .+.+..+..-|+ |+. ++.++. ++++.+|++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~----G~~l~~~~------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i-- 106 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD----GKMLHSYN------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI-- 106 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT----SCEEEEEC------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE--
T ss_pred CccEEEEEcCCCCEEEEcCC----CcEEEEcc------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE--
Confidence 34556666677899999995 43333321 245666666552 332 333333 478999977
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccC------CCCCCeEEEEe--c---CC-EEEEEe-CCeEEEEeCC------
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAA------DPKDSISCFAL--R---GS-HLFSAS-GGKISIFSLE------ 533 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~v~~l~~--s---~~-~l~s~s-dg~I~iwd~~------ 533 (701)
|+.++.+.. +.. .....+..+++ + +. ++++.. +|.+..|++.
T Consensus 107 -----------------Dp~~~~l~~--i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 107 -----------------DGKNGTLQS--MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp -----------------CTTTCCEEE--CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred -----------------CCCCCceee--ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence 444444221 100 01134555666 4 44 455555 8999998872
Q ss_pred -CCcEEEEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----CCceEEeec-CC-CCCeEEEEE--ecCCC-EE
Q 005342 534 -TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-----TKKTKAKLK-GH-QNRITCLAY--SLSLN-VL 601 (701)
Q Consensus 534 -~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~-----~~~~~~~l~-~h-~~~V~~v~~--spdg~-~l 601 (701)
+++.++++.. .+.+-.+...+.. .|+++-++.-|..+|.+ +++.+..+. ++ ...+..+++ .++++ +|
T Consensus 168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 3456778774 4578889999888 99999999888888855 345665543 22 236888888 45556 55
Q ss_pred EEEe-CCCeEEEEECC-CCe
Q 005342 602 VSSG-ADAQLCVWDAV-GWK 619 (701)
Q Consensus 602 ~s~s-~D~~I~vwd~~-~g~ 619 (701)
++++ .+++..|||.. +.+
T Consensus 247 ivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCC
T ss_pred EEEcCCCCEEEEEECCCCCc
Confidence 5555 67899999997 443
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.56 E-value=0.034 Score=56.43 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=96.9
Q ss_pred CeEEEEeCC--CCcEEEEecC------CC-CCeEEEEE--cCC-C--eEEEEeCCCcEEEEeCC-------CCceEEeec
Q 005342 525 GKISIFSLE--TFQTLATFAN------PP-PIATYFIL--LPQ-D--LFAFGFDDSSILVHCPC-------TKKTKAKLK 583 (701)
Q Consensus 525 g~I~iwd~~--~~~~~~~~~~------~~-~~i~~l~~--spd-g--~l~~gs~dg~I~iwd~~-------~~~~~~~l~ 583 (701)
++|.+|++. ++. +..+.. .. ..+..+++ +|. + ++++...+|.+..|++. +.+.++++.
T Consensus 99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 689999773 333 444421 11 45566777 774 4 78888999999999882 346677777
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEE--cCCCC-EEEE-E-ecC
Q 005342 584 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF--HPDQI-HLLS-I-HEG 658 (701)
Q Consensus 584 ~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~--spdg~-~l~s-g-~Dg 658 (701)
. .+.+..++..+....|+.+-+|.-|..++.....-.....+..+..++.. ..+..+++ .++++ +|++ + .++
T Consensus 178 l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~--aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 178 M-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT--RDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp C-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBC--SCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred C-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccc--cCcceEEEEecCCCCEEEEEEcCCCC
Confidence 4 35688899999888999999987777777542110011223323333331 46788887 56666 5665 5 688
Q ss_pred eEEEEECC-CCceeeeee
Q 005342 659 QIDVYEAP-TLNHTSQVL 675 (701)
Q Consensus 659 ~I~iwd~~-~g~~~~~l~ 675 (701)
+..+||.+ +.+.+..+.
T Consensus 255 s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 255 SYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEESSTTCCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEE
Confidence 99999996 677777774
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.02 Score=61.40 Aligned_cols=253 Identities=9% Similarity=0.030 Sum_probs=136.4
Q ss_pred eEEEEEcC-CCCeEE-EEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEE-------ecCCCEEEEEECCC-c
Q 005342 395 SRESTSLP-DADSAV-CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-------SHSGDFLVALTQTA-T 464 (701)
Q Consensus 395 V~~l~~sp-dg~~l~-s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~-------spdg~~l~s~s~dg-~ 464 (701)
...++|+| ++..|+ +....+.|++.|.. .+.+..+.-...........++| +++|++++++...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLK----NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETT----TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECC----CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 67899999 344444 44444678888876 55544433111112346899999 99999777776643 2
Q ss_pred ------EEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC-
Q 005342 465 ------HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE- 533 (701)
Q Consensus 465 ------i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~- 533 (701)
+.+.+... .|.... ...+..+.. + . ....++++ +..|+.+. ++.|..+|+.
T Consensus 217 ~~~~~~V~~i~r~~----~G~~~~--------~~~~~~v~~-~--~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 217 GDESPSVYIIKRNA----DGTFDD--------RSDIQLIAA-Y--K---QCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp GGGEEEEEEEECCT----TSCCST--------TSCEEEEEE-E--S---CCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred cccCceEEEEecCC----CCceee--------cccceeecc-C--C---CceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 33443211 000000 000011111 1 1 22355666 45555554 6899999987
Q ss_pred ------CCcE-----------EEE-ec-CCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeC--CCCce--EEeecCC---
Q 005342 534 ------TFQT-----------LAT-FA-NPPPIATYFILLPQD-LF-AFGFDDSSILVHCP--CTKKT--KAKLKGH--- 585 (701)
Q Consensus 534 ------~~~~-----------~~~-~~-~~~~~i~~l~~spdg-~l-~~gs~dg~I~iwd~--~~~~~--~~~l~~h--- 585 (701)
++.. ... +. +.....+.++++|+| .+ ++-+..+.|+.++. .++.. ...+-|.
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence 4543 112 22 123446899999999 54 44456778998654 33322 1222221
Q ss_pred C------------CCeE-EEEEe-------cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeec----------cCCCCC
Q 005342 586 Q------------NRIT-CLAYS-------LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF----------QTGLVP 635 (701)
Q Consensus 586 ~------------~~V~-~v~~s-------pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~----------~~~~~~ 635 (701)
. .... .++.. ++|.+.++-...++|+.++ .+|.. ..+..- ..|...
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v---~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV---STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE---EEEEESCTTHHHHHSCSCCCCC
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE---EEEecccccccccCccccccCC
Confidence 1 1234 45554 5677777777788999999 45532 122100 001100
Q ss_pred -------CCCCeEEEEEcCC-CCEEEEE-ecCeEEEEECCCCceeee
Q 005342 636 -------ETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 636 -------~~~~v~~v~~spd-g~~l~sg-~Dg~I~iwd~~~g~~~~~ 673 (701)
.-.....|+++++ |.+.++- ....|+.++++....++-
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 0134678999997 6655553 677899999876655543
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.36 E-value=0.0011 Score=75.34 Aligned_cols=207 Identities=9% Similarity=-0.016 Sum_probs=115.7
Q ss_pred CCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCE
Q 005342 442 GRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 518 (701)
Q Consensus 442 ~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~ 518 (701)
..+..++|++.+..|+.+.. .+.|..+++.+... . .... ..+ .........++++ +..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~----------------~-~~~~-~~i-~~~~~~P~glavD~~~g~ 466 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----------------V-SSYD-TVI-SRDIQAPDGLAVDWIHSN 466 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCC-CBC-CSCC--CCCEECCCSSSB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCC----------------C-cceE-EEE-eCCCCCcceEEEEeeCCc
Confidence 45678899987777766554 57787776532100 0 0000 001 0111223456665 444
Q ss_pred EEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEeCC-CcEEEEeCCCCceEEeecCCCCCeEEEE
Q 005342 519 LFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD-SSILVHCPCTKKTKAKLKGHQNRITCLA 593 (701)
Q Consensus 519 l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~-l~~gs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~v~ 593 (701)
|+.+. .+.|.++++........+.........++++|.+ . +++.... +.|+.+++............-...+.|+
T Consensus 467 LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla 546 (699)
T 1n7d_A 467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 546 (699)
T ss_dssp CEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred EEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence 44443 6899999986554333333223455789999976 4 4443333 7888888754322222222234567899
Q ss_pred EecCCC-EEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCCCce
Q 005342 594 YSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH 670 (701)
Q Consensus 594 ~spdg~-~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~g~~ 670 (701)
|+|++. +.++-+..+.|.++++..... ..+.... +.. ....++++..+ .|+.. ..+.|..++..+|+.
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~~~-~~~---~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDE-KRL---AHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCC---EEECCCS-SSC---SSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCce---EEEEecC-CcC---CCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence 999755 555556678999999975431 1121011 111 22344555443 44443 577899999988888
Q ss_pred eeeeee
Q 005342 671 TSQVLL 676 (701)
Q Consensus 671 ~~~l~~ 676 (701)
+..+..
T Consensus 618 ~~~i~~ 623 (699)
T 1n7d_A 618 VNLLAE 623 (699)
T ss_dssp EECCCT
T ss_pred eEEeec
Confidence 777653
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.36 E-value=0.18 Score=52.99 Aligned_cols=154 Identities=8% Similarity=-0.045 Sum_probs=101.6
Q ss_pred CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC----cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~ 575 (701)
...+..++|+ ++.|+.+. .+.|+.+++... .....+.........+++++.+ ++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3567789998 66666665 689999998652 2223333234567899999854 666667788999999876
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEe-C-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-A-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
......+...-.....++++|.+.+|+.+. . .+.|...++..... ..+. . ... ...+.++++|++..|+
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~--~-~~l---~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV--T-ENI---QWPNGITLDLLSGRLY 261 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEE--C-SSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEE--E-CCC---CceEEEEEEeCCCEEE
Confidence 554444443334578999999666555444 2 47899999876431 1111 1 111 5678999999888887
Q ss_pred EE--ecCeEEEEECCCC
Q 005342 654 SI--HEGQIDVYEAPTL 668 (701)
Q Consensus 654 sg--~Dg~I~iwd~~~g 668 (701)
.+ ..+.|..+|+...
T Consensus 262 ~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EEECCCCEEEEEeCCCC
Confidence 75 4678999998543
No 289
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.057 Score=55.45 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=108.8
Q ss_pred EEEEcCCCCeEEEEc------------CCCcEEEEeccccCCCCceeEeecC---CCCCCCCEEEEEEec--CCC-EEEE
Q 005342 397 ESTSLPDADSAVCAK------------SLEKSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSH--SGD-FLVA 458 (701)
Q Consensus 397 ~l~~spdg~~l~s~s------------~d~~v~iw~~~~~~~~~~~~~l~~~---~~~~~~~v~~l~~sp--dg~-~l~s 458 (701)
.++..|+|..+++++ .+|.|.++|..+.. .+...+.+. .....-....+.+.+ +|. +|++
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~--~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE--PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSS--CCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCC--CceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 456788887766662 68999999986321 222333321 111234667777766 454 3444
Q ss_pred EEC---CCcEEEEecCCCCccccccccceeeEEeeCCCCeE-EeecccCCCCCCeEEEEec--CCEEEEEe---------
Q 005342 459 LTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS--------- 523 (701)
Q Consensus 459 ~s~---dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~l~~s--~~~l~s~s--------- 523 (701)
+.. +.++.+|++ +..++.. ....+....-...+++++. |.+.++..
T Consensus 132 vnh~~~~s~ielf~~-------------------d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 132 VNHPGSSSTVEVFKF-------------------QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EECSTTCCEEEEEEE-------------------ETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred EECCCCCCeEEEEEE-------------------ECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 432 456777765 4444431 1111222233467788887 55544432
Q ss_pred ---------CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCC-Cce--EEeecCCCCCe
Q 005342 524 ---------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRI 589 (701)
Q Consensus 524 ---------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~-l~~gs~dg~I~iwd~~~-~~~--~~~l~~h~~~V 589 (701)
.|.|..+|. ++. ..+...-...+.++|+||+ . +++-+..+.|+.|++.. ++. .+.+. ..+..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~P 268 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLV 268 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEE
T ss_pred cchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCC
Confidence 144555554 222 2222122345899999999 4 45556678999999863 332 22332 24567
Q ss_pred EEEEEec-CCCEEEEEeCC-CeEEEEECC
Q 005342 590 TCLAYSL-SLNVLVSSGAD-AQLCVWDAV 616 (701)
Q Consensus 590 ~~v~~sp-dg~~l~s~s~D-~~I~vwd~~ 616 (701)
-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 7889999 59977766543 455555554
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.22 E-value=0.022 Score=57.33 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=105.3
Q ss_pred CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEE-ecC----CC--CCeEEEEE---cCCC-eEEEEe-------
Q 005342 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLAT-FAN----PP--PIATYFIL---LPQD-LFAFGF------- 563 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---spdg-~l~~gs------- 563 (701)
.....+++|+ +..+..++ .++|..||...+..... +.+ .. ..+..+.+ .|++ ++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445577887 56666666 79999999976644333 222 11 13578999 6889 655433
Q ss_pred ------CCCcEEEEeCC---CCceEEeec--CC----------C-CCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCee
Q 005342 564 ------DDSSILVHCPC---TKKTKAKLK--GH----------Q-NRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKK 620 (701)
Q Consensus 564 ------~dg~I~iwd~~---~~~~~~~l~--~h----------~-~~V~~v~~spdg~~l~s~s~D-~~I~vwd~~~g~~ 620 (701)
.+..+..||+. +++.+.... +. . ...+.++..++|+.-++++.. +.|...+.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 26789999998 776654332 11 1 248899999999988888888 888888776532
Q ss_pred eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE-ecCeEEEEECCC
Q 005342 621 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 621 ~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
.....+. .+.... ....+.|+++|+|+.|++. .+|.+..+|+.+
T Consensus 171 ~~~~~~~-~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWE-SGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEC-CCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred Eeeeeec-CCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2111122 111111 1457899999999988885 588899999764
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.21 E-value=0.064 Score=57.05 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCeEEEEcCC---Cc-EEEEeccccCCCCceeEeecCCCCCCCCEEEEEEec-CCCEEEEEECCCcEEEEe
Q 005342 395 SRESTSLPDADSAVCAKSL---EK-SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 469 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d---~~-v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd 469 (701)
...++++|+|+++++.... .. +...+.. .+......++ .......++++| +|...++-..++.|..++
T Consensus 184 P~giavd~dG~lyVad~~~~~~~~gv~~~~~~----~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 184 CADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA----SGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYD 256 (433)
T ss_dssp EEEEEECTTCCEEEEECCSCTTSEEEEEECGG----GTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred ccEEEECCCCCEEEEcCCCCcccceEEEEECC----CCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence 7789999999955554421 12 2222222 1110000010 123445678888 565444444467777774
Q ss_pred cCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCC--CCcE--EEEe
Q 005342 470 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE--TFQT--LATF 541 (701)
Q Consensus 470 ~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~--~~~~--~~~~ 541 (701)
+.++......+..+.......++++ |++|+.+. .+.|+.++.. ++.. ...+
T Consensus 257 ---------------------~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 257 ---------------------PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp ---------------------TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred ---------------------CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 4444431111111222233468998 77666665 6899998865 3321 1222
Q ss_pred cCC---------------CCCeEEEEE---------cCCC-eEEEEeCCCcEEEEeCCCCceEEeecCC-----------
Q 005342 542 ANP---------------PPIATYFIL---------LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----------- 585 (701)
Q Consensus 542 ~~~---------------~~~i~~l~~---------spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h----------- 585 (701)
.+. -.....+++ .++| ++++-..++.|+.++. ++.. .++.|.
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG 393 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDG 393 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCC
Confidence 211 123467899 6777 6666677789999985 5643 333321
Q ss_pred -------CCCeEEEEEe-cCCCEEEEEeCCCeEEEEECC
Q 005342 586 -------QNRITCLAYS-LSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 586 -------~~~V~~v~~s-pdg~~l~s~s~D~~I~vwd~~ 616 (701)
-.....++++ ++|.++++-...++|+.++++
T Consensus 394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1136778888 567666666667778777653
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.18 E-value=0.23 Score=50.22 Aligned_cols=193 Identities=10% Similarity=-0.052 Sum_probs=116.1
Q ss_pred eEEEEEcCCC-CeEEEEcCCCcEEEEeccccCCCCce--eEeecCCCCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEec
Q 005342 395 SRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKW 470 (701)
Q Consensus 395 V~~l~~spdg-~~l~s~s~d~~v~iw~~~~~~~~~~~--~~l~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~ 470 (701)
+..++|++.+ ....+-...+.|..++.. ++.. ..+.. .-.....+++.+.+..|+.+. ..+.|.+++.
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~----g~~~~~~~~~~----~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFN----KTESVQNVVVS----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT----SSSCCCEEEEE----CCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEcc----CCCceEEEEcC----CCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 5688999854 455565667888888886 2211 11111 123456788887665555554 4677888765
Q ss_pred CCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe---CCeEEEEeCCCCcEEEEe-cCC
Q 005342 471 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATF-ANP 544 (701)
Q Consensus 471 ~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s---dg~I~iwd~~~~~~~~~~-~~~ 544 (701)
+.. ....+ + .........++++ +..|+.+. .+.|...++.. .....+ ...
T Consensus 109 dG~-------------------~~~~l---~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~ 164 (318)
T 3sov_A 109 DGS-------------------LRKVL---F-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE 164 (318)
T ss_dssp TSC-------------------SCEEE---E-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS
T ss_pred CCC-------------------cEEEE---E-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC
Confidence 221 11111 1 1223456788887 45555544 37899998853 333333 222
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 545 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 545 ~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
-.....++++|++ +.++-+..+.|..+|+..........+.......+++.. +.++++-...+.|..++..+|+.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 3456899999976 555556678999999864333222333344567788753 34555666778999999987753
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.15 E-value=0.48 Score=52.74 Aligned_cols=155 Identities=14% Similarity=0.016 Sum_probs=88.3
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC--CCcEEEEecC
Q 005342 395 SRESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ--TATHKLWKWQ 471 (701)
Q Consensus 395 V~~l~~spdg~-~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~ 471 (701)
...+++.+.+. ..++-...+.|.+.+++ +.....+.. ..-.....+++.|.+.+|..+.. .+.|...+++
T Consensus 86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~d----G~~~~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSETNRIEVSNLD----GSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cCeEEEEecCCEEEEEeCCCCEEEEEECC----CCCEEEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 67899998655 44555667889999986 333323221 12345668899997666666553 2444444331
Q ss_pred CCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 472 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 472 ~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
. .....+ . ...-.....++++ ++.|+.+. .+.|..+|+..........+....
T Consensus 159 G-------------------~~~~~l---~-~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 215 (619)
T 3s94_A 159 G-------------------SSRFII---I-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH 215 (619)
T ss_dssp S-------------------CSCEEE---E-CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred C-------------------CceEEE---E-eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC
Confidence 1 111112 1 1223467789998 67777766 588999998643322222212222
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE
Q 005342 548 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK 579 (701)
Q Consensus 548 i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~ 579 (701)
...+++..+..+++-..++.|...|..+++..
T Consensus 216 P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 216 PFALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred ceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 34667765545555566778999998776543
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.13 E-value=0.66 Score=55.51 Aligned_cols=256 Identities=10% Similarity=0.027 Sum_probs=138.8
Q ss_pred eEEEEEcCC------CCeEEEEcC-CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEe--cCCCEEEEEECCCcE
Q 005342 395 SRESTSLPD------ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATH 465 (701)
Q Consensus 395 V~~l~~spd------g~~l~s~s~-d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i 465 (701)
|.|+++.|. ++++|.|.. |++++|+++.+ -.......++. .....++.+. ....+|..|-.||.+
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGAL 629 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeE
Confidence 889998764 468999986 99999999973 12222212321 1233344333 234578888899998
Q ss_pred EEEecCCC--Cc------cccccccceeeEEeeCC------------------CCeEEeecccCCCCCCeE-EEEec---
Q 005342 466 KLWKWQSN--KQ------SLEEENVNMESQLYQPS------------------SKLVMTNDIAADPKDSIS-CFALR--- 515 (701)
Q Consensus 466 ~vwd~~~~--~~------~~g~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~v~-~l~~s--- 515 (701)
..+.++.. .. ..|.. .+.+..+... .+.+....+ ....+. ...|+
T Consensus 630 ~~~~~d~~tg~l~d~r~~~LG~~--pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 630 FYFGLNIETGLLSDRKKVTLGTQ--PTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEECTTTCCEEEEEEEECCSS--CCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSS
T ss_pred EEEEEcCCCCccccceeEEcCCC--ceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCccc
Confidence 77766432 22 11110 0111111111 111111001 111222 22343
Q ss_pred -CCEEEEEeCCeEEEEeCCCCc--EEEEecCCCCCeEEEEEcCCC-eEEEEe-C--------------------------
Q 005342 516 -GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGF-D-------------------------- 564 (701)
Q Consensus 516 -~~~l~s~sdg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~spdg-~l~~gs-~-------------------------- 564 (701)
.+-++..+++.+++..+.+.. .+++++ -...+..++++|+. .++++. .
T Consensus 705 ~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 705 YPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp STTEEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCCcEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 344555556668888775432 344444 34577889999877 333322 1
Q ss_pred ----------------------CCcEEEEeCCCCceEEeecC-CCCCeEEEE---EecC-CCEEEEEe----------CC
Q 005342 565 ----------------------DSSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS-LNVLVSSG----------AD 607 (701)
Q Consensus 565 ----------------------dg~I~iwd~~~~~~~~~l~~-h~~~V~~v~---~spd-g~~l~s~s----------~D 607 (701)
-+.|++.|..+.+.+..+.- ....+.+++ |..+ ..+++.|. ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 02467778777776655542 222345544 3222 46888776 35
Q ss_pred CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceee
Q 005342 608 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 608 ~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~ 672 (701)
|.|++|++..++.. .+.+... .++|++++-- +| +|++|-...|++|++...+.++
T Consensus 864 Gri~vf~v~~~kL~---lv~~~~v-----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQ---TVAEKEV-----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR 918 (1158)
T ss_dssp EEEEEEEEETTEEE---EEEEEEE-----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE
T ss_pred eEEEEEEEECCEEE---EEEEEEc-----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE
Confidence 78999999855322 2221111 1778887643 34 6777777899999997665433
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.14 Score=51.10 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=76.2
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK 581 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~ 581 (701)
+..++.|+ + ..+.+||..+.+-. ..+.........+. -++ .++.|+.+ ..+.+||+.+.+....
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 66666665 3 36899998876533 22221111222222 256 66666654 3689999988755432
Q ss_pred --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+.........+. -++++++.|+.+ ..+.+||+.+.+-. .+..++... .....+.+ ++++++.
T Consensus 191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~i~v~ 259 (301)
T 2vpj_A 191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT---TVTSMTTPR----CYVGATVL--RGRLYAI 259 (301)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEEEEE
T ss_pred CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEE---ECCCCCCcc----cceeEEEE--CCEEEEE
Confidence 111111112222 366777777654 46999999986432 222222222 22222322 5666666
Q ss_pred E-ec-----CeEEEEECCCCce
Q 005342 655 I-HE-----GQIDVYEAPTLNH 670 (701)
Q Consensus 655 g-~D-----g~I~iwd~~~g~~ 670 (701)
| .+ ..+.+||+.+.+-
T Consensus 260 GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 260 AGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CCBCSSSBEEEEEEEETTTTEE
T ss_pred cCcCCCcccccEEEEcCCCCeE
Confidence 4 33 4588999987653
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.07 E-value=0.58 Score=52.18 Aligned_cols=228 Identities=8% Similarity=-0.002 Sum_probs=136.1
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEecCCCCccccccccce
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM 484 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~ 484 (701)
+|+.+ ....|+..++. +..... .++.. .-..+..++|++.+..++.+.. ++.|..+++...
T Consensus 8 ~Ll~s-~~~~I~~i~l~----~~~~~~-~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~----------- 69 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLE----TNNNNV-AIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS----------- 69 (628)
T ss_dssp EEEEE-ETTEEEEEESS----CTTCEE-ECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----------
T ss_pred EEEEE-eCCcEEEEECC----CCCcce-EEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-----------
Confidence 44444 34678888886 332222 22322 2356889999998777766654 678877755221
Q ss_pred eeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eE
Q 005342 485 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 559 (701)
Q Consensus 485 ~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l 559 (701)
..+.+ +.. .......++++ +..|+.+. .+.|.+.++........+...-.....++++|.. .|
T Consensus 70 --------~~~~v---~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 70 --------ALEHV---VEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp --------SCEEE---ECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEE
T ss_pred --------CcEEE---EeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeE
Confidence 11111 111 12345577777 56565555 5899999986543322232334456899999965 44
Q ss_pred EEEe--CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCCCCCC
Q 005342 560 AFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 636 (701)
Q Consensus 560 ~~gs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~ 636 (701)
+... ..+.|...++.......... .-...+.+++++++..|+.+ ...+.|...|+..+.. ..+. ...
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~----~~l-- 207 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIA----DDL-- 207 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE----ECC--
T ss_pred EEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EEee----ccC--
Confidence 4433 35688888876544333233 34567899999976665544 5577999999977532 2222 111
Q ss_pred CCCeEEEEEcCCCCEEEEE-ecCeEEEEECCCCceeeeee
Q 005342 637 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQVL 675 (701)
Q Consensus 637 ~~~v~~v~~spdg~~l~sg-~Dg~I~iwd~~~g~~~~~l~ 675 (701)
....++++.. +...++- ..+.|...|..+|+....+.
T Consensus 208 -~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 208 -PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp -SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 3345777765 3333443 57889999988887655554
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.04 E-value=0.15 Score=52.48 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEe-ecC-CCCCCCCEEEEEEecC---CCEEEEEEC-C-----C
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLP-DNSFGGRVVRLIYSHS---GDFLVALTQ-T-----A 463 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l-~~~-~~~~~~~v~~l~~spd---g~~l~s~s~-d-----g 463 (701)
.+.++|.|||+++++- .++.|.+++ . . ....+ .++ ..........++++|+ +..|.++.. + +
T Consensus 33 P~~ia~~pdG~l~V~e-~~g~I~~i~-~----g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 33 PWALAFLPDGGMLIAE-RPGRIRLFR-E----G-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp EEEEEECTTSCEEEEE-TTTEEEEEE-T----T-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred ceEEEEcCCCeEEEEe-CCCeEEEEE-C----C-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 6789999999966664 458888887 3 2 11111 121 1123457899999998 555555443 2 4
Q ss_pred cEEEEecCCCCccccccccceeeEEeeCCCCeEEeeccc--CCCCCCeEEEEec--CCEEEEEeC--------------C
Q 005342 464 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSASG--------------G 525 (701)
Q Consensus 464 ~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~l~~s--~~~l~s~sd--------------g 525 (701)
.|..++...... .+.+.+...+. .........++|. |.+.++.++ |
T Consensus 106 ~v~r~~~~~~~~----------------~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g 169 (352)
T 2ism_A 106 QVVRLRHLGERG----------------VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG 169 (352)
T ss_dssp EEEEEEECSSCE----------------EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred EEEEEEeCCCCc----------------CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence 566665532100 00011101111 1111223578888 544444322 4
Q ss_pred eEEEEeCCCC------------cEEEEe-cCCCCCeEEEEEcC-CC-eEEEEeCCCc--------EEEEeCCCCc-----
Q 005342 526 KISIFSLETF------------QTLATF-ANPPPIATYFILLP-QD-LFAFGFDDSS--------ILVHCPCTKK----- 577 (701)
Q Consensus 526 ~I~iwd~~~~------------~~~~~~-~~~~~~i~~l~~sp-dg-~l~~gs~dg~--------I~iwd~~~~~----- 577 (701)
.|..+|.... .....+ .++ .....++|+| +| ++++-..... |.+.. .+.
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp 246 (352)
T 2ism_A 170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWP 246 (352)
T ss_dssp EEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTT
T ss_pred EEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCC
Confidence 6666665420 000111 122 2246789999 55 4443332222 43332 221
Q ss_pred -------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEE
Q 005342 578 -------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHI 643 (701)
Q Consensus 578 -------------~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v 643 (701)
++..+..| .....++| .+|.++++.-..+.|...++....... ......+.... ..+..+
T Consensus 247 ~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~----~rp~~v 320 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGF----GRLREV 320 (352)
T ss_dssp TCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESS----CCEEEE
T ss_pred cccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccC----CCeeEE
Confidence 22233222 34567777 577777766667788887776432100 00011121121 678999
Q ss_pred EEcCCCCEEEEE
Q 005342 644 QFHPDQIHLLSI 655 (701)
Q Consensus 644 ~~spdg~~l~sg 655 (701)
++.|||.+.++.
T Consensus 321 ~~~pdG~lyv~~ 332 (352)
T 2ism_A 321 QVGPDGALYVTT 332 (352)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 999999877764
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.02 E-value=0.38 Score=55.06 Aligned_cols=155 Identities=9% Similarity=-0.029 Sum_probs=100.3
Q ss_pred CCCeEEEEec--CCEEEEEe--CCeEEEEeCCCC----cEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342 506 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 506 ~~~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~ 575 (701)
...+..++++ +..|+.+. .+.|+.+++... .....+.........|++++.+ ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 3456788888 56666555 688999998653 2223333234456789999877 566666778999999875
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEE
Q 005342 576 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 653 (701)
Q Consensus 576 ~~~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D-~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~ 653 (701)
......+...-.....|+++|.+.+|+.+. .. +.|.+.++..... ..+. .... ...+.|++.+.+..|+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~lv---~~~l---~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV---TENI---QWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE---CSSC---SCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---EEEE---eCCC---CCceEEEEecCCCeEE
Confidence 544333333344688999999765555444 33 7899999876431 1111 1221 5678999998877777
Q ss_pred EE--ecCeEEEEECCCCc
Q 005342 654 SI--HEGQIDVYEAPTLN 669 (701)
Q Consensus 654 sg--~Dg~I~iwd~~~g~ 669 (701)
.+ ..+.|...++....
T Consensus 574 waD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEETTTTEEEEEETTSCS
T ss_pred EEeCCCCcEEEEecCCCc
Confidence 65 46789999985443
No 299
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.027 Score=59.99 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred CeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEeC-CC----cEEEEeCCCCc
Q 005342 508 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS----SILVHCPCTKK 577 (701)
Q Consensus 508 ~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs~-dg----~I~iwd~~~~~ 577 (701)
....++++ +..|+++. .+.|+.+|..++...... ........++++++| .|+++.. ++ .+..++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 34567776 35666666 588999999776544433 345567899999999 5665554 22 3444543 332
Q ss_pred eE--EeecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 578 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 578 ~~--~~l~~h~~~V~~v~~sp-dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.. ..+.. ......++++| +|.++++-..++.|+.++..++... .+.....+ ...+.++|+|+|++|+.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 22 22221 23457789999 7777777777899999999876421 12212111 44689999999996666
Q ss_pred E--ecCeEEEEECC
Q 005342 655 I--HEGQIDVYEAP 666 (701)
Q Consensus 655 g--~Dg~I~iwd~~ 666 (701)
. ..+.|..++..
T Consensus 287 ~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHYILRSDYD 300 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 4 57789998764
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.99 E-value=0.18 Score=51.94 Aligned_cols=231 Identities=8% Similarity=-0.015 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cC-CCCCCCCEEEEEEecC---CCEEEEEEC----C---
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LP-DNSFGGRVVRLIYSHS---GDFLVALTQ----T--- 462 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~-~~~~~~~v~~l~~spd---g~~l~s~s~----d--- 462 (701)
.+.++|.|||+++++- .++.|.+++. .+. ..+. ++ ..........++++|+ +..|.++.. +
T Consensus 31 P~~ia~~pdG~l~V~e-~~g~I~~~d~-----~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTE-RPGRLVLISP-----SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp EEEEEEEETTEEEEEE-TTTEEEEECS-----SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CeEEEEcCCCeEEEEe-CCCEEEEEeC-----CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 6789999999866654 4488888863 233 2221 22 1122456899999998 445554433 2
Q ss_pred -CcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--------------C
Q 005342 463 -ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--------------G 525 (701)
Q Consensus 463 -g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--------------g 525 (701)
+.|..|+...... . . .+.+.+...+..........++|. |.+.++.++ |
T Consensus 104 ~~~v~r~~~~~~~~---~-~----------~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 104 RNRVIRGRLDGSTF---K-L----------KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEEEEECSSSC---C-E----------EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred ceEEEEEEECCCCc---C-c----------CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 4566665432100 0 0 000111000111111134567887 554444322 4
Q ss_pred eEEEEeCCCC---------cEEEEecCCCCCeEEEEEcC-CC-eEEEEeCCC---cEEEEeCCC--------C-------
Q 005342 526 KISIFSLETF---------QTLATFANPPPIATYFILLP-QD-LFAFGFDDS---SILVHCPCT--------K------- 576 (701)
Q Consensus 526 ~I~iwd~~~~---------~~~~~~~~~~~~i~~l~~sp-dg-~l~~gs~dg---~I~iwd~~~--------~------- 576 (701)
.|..+|.... ..+.. .++. ....++|+| +| ++++-.... .|.+...-. +
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 5666665321 01111 1232 246899999 55 433322221 243332110 0
Q ss_pred -ceEEee-cCCCCCeEEEEEe-------cCCCEEEEEeCCCeEEEEECCCC-eeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342 577 -KTKAKL-KGHQNRITCLAYS-------LSLNVLVSSGADAQLCVWDAVGW-KKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (701)
Q Consensus 577 -~~~~~l-~~h~~~V~~v~~s-------pdg~~l~s~s~D~~I~vwd~~~g-~~~~~~~l~~~~~~~~~~~~~v~~v~~s 646 (701)
.++..+ ..| .....++|. .+|.++++.-..+.|...++... +... ...+..+.. ..+..+++.
T Consensus 248 ~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~~---~rp~~v~~~ 320 (354)
T 3a9g_A 248 VDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK---ISTFFKNVF---GRLRDVVID 320 (354)
T ss_dssp CCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE---EEEECTTTS---CCEEEEEEC
T ss_pred cCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc---eeeeccCCC---CCeeEEEEC
Confidence 122233 222 356788883 57777777777788988888753 2211 111222222 678999999
Q ss_pred CCCCEEEEE
Q 005342 647 PDQIHLLSI 655 (701)
Q Consensus 647 pdg~~l~sg 655 (701)
|||.+.++.
T Consensus 321 pDG~lyv~~ 329 (354)
T 3a9g_A 321 DDGGILIST 329 (354)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999876665
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.89 E-value=0.075 Score=53.47 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=100.1
Q ss_pred EEEEEEecCCCEEEEEE-CCCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccC-----CCCCCeEEEEe---
Q 005342 444 VVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-----DPKDSISCFAL--- 514 (701)
Q Consensus 444 v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~v~~l~~--- 514 (701)
-.++.|.+....+..++ ..+.|..|+. ..+......+.. .....+..+.+
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~---------------------~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~ 73 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNP---------------------KTQSHFNVVIDGASSNGDGEQQMSGLSLLTH 73 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECT---------------------TTCCEEEECCTTTCCSSCCSEEEEEEEESSS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcC---------------------CCCeEEEEecCCccccCCCcceeeEEEEecc
Confidence 34678988666677766 5899999955 333221111211 01113567888
Q ss_pred c--CCEEEEEe--------------CCeEEEEeCC---CCcEEEEecC-------------CCCCeEEEEEcCCC-eEEE
Q 005342 515 R--GSHLFSAS--------------GGKISIFSLE---TFQTLATFAN-------------PPPIATYFILLPQD-LFAF 561 (701)
Q Consensus 515 s--~~~l~s~s--------------dg~I~iwd~~---~~~~~~~~~~-------------~~~~i~~l~~spdg-~l~~ 561 (701)
. +.++++.. +..+..||+. +++.+....- .......++..++| ..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 4 55555332 4679999998 7876654431 11247899999999 7777
Q ss_pred EeCC-CcEEEEeCCCCceEEeec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 562 GFDD-SSILVHCPCTKKTKAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 562 gs~d-g~I~iwd~~~~~~~~~l~------~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
++.. +.|..++.... .+..+. ......+.++++|+|+.|+....++.+..+|+..
T Consensus 154 ~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 154 FALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 8888 88988886543 333221 1222467999999999888776699999999885
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.86 E-value=0.56 Score=48.74 Aligned_cols=225 Identities=11% Similarity=0.073 Sum_probs=135.4
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~ 492 (701)
+..|.|-|+.+.... .++ |. ...+...+|..+.++.-. ..++.++|+ +
T Consensus 47 ~~~vvIiDl~~~~~~--~rr---pi-----~AdsAIMnP~~~iiALra-g~~lQiFnl---------------------e 94 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP--IRR---PI-----SADSAIMNPASKVIALKA-GKTLQIFNI---------------------E 94 (494)
T ss_dssp CCEEEEEETTSTTSC--EEE---EC-----CCSEEEECSSSSCEEEEE-TTEEEEEET---------------------T
T ss_pred CCeEEEEECCCCCcc--eec---cc-----ccceeeeCCCCcEEEEec-CCeEEEEch---------------------H
Confidence 347888888742221 111 11 122344677777555443 678888866 4
Q ss_pred CCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCC-cEEEEecCC----CCCeEEEEEcCCC--eEEEEe-
Q 005342 493 SKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANP----PPIATYFILLPQD--LFAFGF- 563 (701)
Q Consensus 493 ~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~----~~~i~~l~~spdg--~l~~gs- 563 (701)
+...+.. . ....+|.-..|- .+.|+..++..|+-|++... .+.+.|..| ...|..-..+++. .+++|-
T Consensus 95 ~K~klks-~--~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~ 171 (494)
T 1bpo_A 95 MKSKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (494)
T ss_dssp TTEEEEE-E--ECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEE
T ss_pred Hhhhhcc-e--ecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeec
Confidence 4442221 1 123467677777 88999999999999999643 466666654 4567788889998 444443
Q ss_pred -----CCCcEEEEeCCCCceEEeecCCCCCeEEEEEecC---CCEEEEEeCC---CeEEEEECCCC---e-eeeeeeeee
Q 005342 564 -----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---LNVLVSSGAD---AQLCVWDAVGW---K-KLCSKFLHS 628 (701)
Q Consensus 564 -----~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spd---g~~l~s~s~D---~~I~vwd~~~g---~-~~~~~~l~~ 628 (701)
-.|.+.+|..+. +.-+.+.||......+....+ .+.++.+... ++++|-++... . ....+...
T Consensus 172 ~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd- 249 (494)
T 1bpo_A 172 AQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD- 249 (494)
T ss_dssp EETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE-
T ss_pred ccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee-
Confidence 346789999754 456778888665443333211 1245545443 78999988532 1 11112222
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l 674 (701)
+.........--.++..|+....+.. ..-|.|++||++||.++..-
T Consensus 250 v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 21111101134468888988777766 68899999999999986543
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.80 E-value=0.38 Score=48.01 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCEEEEEe-C------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC---------CCcEEEEeCCCCc
Q 005342 516 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD---------DSSILVHCPCTKK 577 (701)
Q Consensus 516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~---------dg~I~iwd~~~~~ 577 (701)
+..++.|+ + ..+.+||..+.+-...-..+.... .+++. -++ .++.|+. -..+.+||..+.+
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 66666665 4 468999998775332211111111 22222 255 5555543 3458999998875
Q ss_pred eEEe--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCC
Q 005342 578 TKAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 650 (701)
Q Consensus 578 ~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~ 650 (701)
.... +......- +++. -++++++.|+.+ ..+.+||..+.+-.. +..++... .....+.+ +++
T Consensus 181 W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~ 249 (306)
T 3ii7_A 181 WTELCPMIEARKNH-GLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM---VSPMPWKG----VTVKCAAV--GSI 249 (306)
T ss_dssp EEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEE---CCCCSCCB----SCCEEEEE--TTE
T ss_pred EEECCCccchhhcc-eEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE---CCCCCCCc----cceeEEEE--CCE
Confidence 4332 11111111 2222 266677766643 468999999864222 22122221 22233333 566
Q ss_pred EEEEE-ec-----CeEEEEECCCCce
Q 005342 651 HLLSI-HE-----GQIDVYEAPTLNH 670 (701)
Q Consensus 651 ~l~sg-~D-----g~I~iwd~~~g~~ 670 (701)
+++.| .+ ..+.+||+.+.+-
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 66665 32 4689999987654
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.80 E-value=0.5 Score=47.21 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=134.0
Q ss_pred CCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCC
Q 005342 413 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 492 (701)
Q Consensus 413 d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~ 492 (701)
+..|.|.|+.+.... .++ |. ...+...+|..+.++.-. ...+.++|+ +
T Consensus 48 ~~~VvIiDl~n~~~~--~Rr---pi-----~AdsAIMnP~~~ViALra-g~~LQiFnl---------------------e 95 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNP--IRR---PI-----SADSAIMNPASKVIALKA-GKTLQIFNI---------------------E 95 (365)
T ss_dssp EEEEEEEETTSTTSC--EEE---EC-----CCSEEEECSSSSEEEEEE-TTEEEEEET---------------------T
T ss_pred CCEEEEEECCCCCCc--ccc---cc-----ccceeeeCCCccEEEEec-CCeEEEech---------------------H
Confidence 347888898753221 111 11 122334578877555544 678888866 4
Q ss_pred CCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCC-CcEEEEecCC----CCCeEEEEEcCCC--eEEEEe-
Q 005342 493 SKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD--LFAFGF- 563 (701)
Q Consensus 493 ~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~-~~~~~~~~~~----~~~i~~l~~spdg--~l~~gs- 563 (701)
+.+.+.. . ....+|.-..|- .+.|+..++..|+-|++.. ..+.+.+..| ...|..-..+++. .+++|-
T Consensus 96 tK~klks-~--~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~ 172 (365)
T 2xzh_A 96 MKSKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 172 (365)
T ss_dssp TTEEEEE-E--ECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEE
T ss_pred Hhhhhcc-e--ecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEe
Confidence 4443321 1 123567777777 8889999999999999974 3466666544 4567778888988 444543
Q ss_pred -----CCCcEEEEeCCCCceEEeecCCCCCeEEEEEec--C-CCEEEEEeC---CCeEEEEECCCC---ee-eeeeeeee
Q 005342 564 -----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--S-LNVLVSSGA---DAQLCVWDAVGW---KK-LCSKFLHS 628 (701)
Q Consensus 564 -----~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~sp--d-g~~l~s~s~---D~~I~vwd~~~g---~~-~~~~~l~~ 628 (701)
-.|.+.+|..+. +.-+.+.||......+.... . .++++.+.. .++++|-++... .. ...+...-
T Consensus 173 ~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi 251 (365)
T 2xzh_A 173 AQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 251 (365)
T ss_dssp EETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEE
T ss_pred ccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccccccee
Confidence 235789999754 45677888865443332211 1 124443332 258899988432 11 11122220
Q ss_pred -ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceeeee
Q 005342 629 -FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 629 -~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l 674 (701)
++.... ..--.++..|+....+.. ..-|.|++||++||.++..-
T Consensus 252 ~fppea~--~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 252 FFPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp CCCTTCT--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eCCcccc--CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 121111 134468888888777766 68899999999999987543
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.73 E-value=0.41 Score=47.67 Aligned_cols=142 Identities=10% Similarity=0.058 Sum_probs=74.8
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-------CcEEEEeCCCCceE
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTK 579 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-------g~I~iwd~~~~~~~ 579 (701)
+..++.|+ + ..+.+||..+.+-... +...... .+++. -++ .++.|+.+ ..+.+||+.+.+..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 66666666 4 3688999887653322 1111111 22222 255 55555432 35899999877543
Q ss_pred Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
.. +.........+. -++++++.|+.+ ..+.+||..+++-. .+..++... .....+. -+++++
T Consensus 187 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~r----~~~~~~~--~~~~i~ 255 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR---QVADMNMCR----RNAGVCA--VNGLLY 255 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEE--ETTEEE
T ss_pred ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEe---eCCCCCCcc----ccCeEEE--ECCEEE
Confidence 32 221111112222 267777777654 46999999986432 222222222 1112222 256666
Q ss_pred EEE-ec-----CeEEEEECCCCce
Q 005342 653 LSI-HE-----GQIDVYEAPTLNH 670 (701)
Q Consensus 653 ~sg-~D-----g~I~iwd~~~g~~ 670 (701)
+.| .+ ..+.+||+.+.+-
T Consensus 256 v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 256 VVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEE
T ss_pred EECCcCCCcccccEEEEcCCCCeE
Confidence 664 33 3489999987753
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.66 E-value=0.076 Score=55.10 Aligned_cols=137 Identities=13% Similarity=0.097 Sum_probs=90.2
Q ss_pred CCEEEEEeCCeEEEEeCCCCcEEEEecCC----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc------------e
Q 005342 516 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T 578 (701)
Q Consensus 516 ~~~l~s~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~------------~ 578 (701)
|..++.+.++.||.-++......+.+... -..+..+..+|+| ++|..+ +..|.|..+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 88888888999999998755555555433 2367889999999 777764 5688888876321 1
Q ss_pred EEeecC------CCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccC--CCCCCCCCeEEEEEcC
Q 005342 579 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHP 647 (701)
Q Consensus 579 ~~~l~~------h~~~V~~v~~sp---dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~--~~~~~~~~v~~v~~sp 647 (701)
.+.+.- ...+|..+.|+| .+..|++-..|++|++||+........ .+..... +.......|.+++|++
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 122221 246799999999 456899999999999999997432211 2221100 1011115678888888
Q ss_pred CCCEEEE
Q 005342 648 DQIHLLS 654 (701)
Q Consensus 648 dg~~l~s 654 (701)
++-.|.+
T Consensus 190 ~~lTLYv 196 (452)
T 3pbp_A 190 DGLTLYC 196 (452)
T ss_dssp TSSCEEE
T ss_pred CCcEEEE
Confidence 7654444
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.58 E-value=0.26 Score=52.84 Aligned_cols=152 Identities=9% Similarity=0.040 Sum_probs=91.0
Q ss_pred CCEEEEEEec-CCCEEEEEEC-CCcEEEEecCCCCccccccccceeeEEeeCCCCeEEeecccCC--CCCCeEEEEe---
Q 005342 442 GRVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFAL--- 514 (701)
Q Consensus 442 ~~v~~l~~sp-dg~~l~s~s~-dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~l~~--- 514 (701)
.....++|+| ++..|+++.. .+.|++. |+.++.+... ...+ .......++|
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~I---------------------D~~~~~v~~l-~~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLI---------------------DLKNRMLSSP-LNINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEE---------------------ETTTTEEEEE-ECCTTSSCSBEEEEEECCC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEE---------------------ECCCCEEEEE-EccCccccCCCcEEEEeec
Confidence 4577899998 4555555544 3445554 5566664431 1111 2235789999
Q ss_pred ----c--CCEEEEEe-CC-------eEEEEeCCC-CcEE-----EEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEe
Q 005342 515 ----R--GSHLFSAS-GG-------KISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 572 (701)
Q Consensus 515 ----s--~~~l~s~s-dg-------~I~iwd~~~-~~~~-----~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd 572 (701)
+ |++|+++. .+ .|.+++... +... ..+... .....++++|++ ++++-..++.|+.+|
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 7 77677776 32 266776443 2221 122211 233578899965 666777888999999
Q ss_pred CC-------CCce-----------EEe-ec-CCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECC
Q 005342 573 PC-------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAV 616 (701)
Q Consensus 573 ~~-------~~~~-----------~~~-l~-~h~~~V~~v~~spdg~~-l~s~s~D~~I~vwd~~ 616 (701)
+. ++.. ... +. +.......++|+|+|++ .++-+..+.|+.++..
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 87 5543 111 11 22345689999999995 4555667899996653
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.51 E-value=0.023 Score=64.63 Aligned_cols=198 Identities=10% Similarity=-0.070 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCeEEEE-cCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEecCC
Q 005342 395 SRESTSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL-TQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~-s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~ 472 (701)
+..++|++.+..|+.+ ...+.|..+++........... .+ .........+++.+.+..|+.+ ...+.|.++++
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-~i--~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~-- 482 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-- 482 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC-BC--CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS--
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE-EE--eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec--
Confidence 5678999876666555 4557888888762100011111 00 0111234567777555444444 34577777754
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEe--C-CeEEEEeCCCCcEEEEe-cCCCC
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLETFQTLATF-ANPPP 546 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~s--d-g~I~iwd~~~~~~~~~~-~~~~~ 546 (701)
....... .+ .........++++ +.+|+.+. . +.|.++++.. .....+ ...-.
T Consensus 483 -------------------dg~~~~~-l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~ 540 (699)
T 1n7d_A 483 -------------------KGVKRKT-LF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQ 540 (699)
T ss_dssp -------------------SSCCEEE-EC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCS
T ss_pred -------------------CCCceEE-EE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCC
Confidence 2222111 01 1112334567776 44444443 3 6888888743 322222 22233
Q ss_pred CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCee
Q 005342 547 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 620 (701)
Q Consensus 547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~ 620 (701)
....|+++|++ ++++-+..+.|..+|+........+. +.......+++..+ .++++....+.|..+|..+|+.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 45789999987 55555667799999986533322222 11223445666544 4555566678999999888753
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.45 E-value=0.87 Score=45.59 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=75.2
Q ss_pred CCEEEEEe-C--------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCCce
Q 005342 516 GSHLFSAS-G--------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD-D-----SSILVHCPCTKKT 578 (701)
Q Consensus 516 ~~~l~s~s-d--------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~-d-----g~I~iwd~~~~~~ 578 (701)
+..++.|+ + ..+.+||..+.+-...-..+.... .+++. -++ .++.|+. + ..+.+||..+.+.
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 55555555 2 468999998765322111111111 22222 355 5666655 2 3689999987754
Q ss_pred EEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE
Q 005342 579 KAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (701)
Q Consensus 579 ~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~ 651 (701)
... +......-..+ .-++++++.|+.++ .+.+||..+.+-. .+..++... .....+.+ ++++
T Consensus 178 ~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~l 246 (315)
T 4asc_A 178 KELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA---PFEAFPQER----SSLSLVSL--VGTL 246 (315)
T ss_dssp EECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEE
T ss_pred EECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEE---ECCCCCCcc----cceeEEEE--CCEE
Confidence 332 11111111222 23677777777654 5899999886422 222222222 22222322 5566
Q ss_pred EEEE-ec--------------CeEEEEECCCCceeee
Q 005342 652 LLSI-HE--------------GQIDVYEAPTLNHTSQ 673 (701)
Q Consensus 652 l~sg-~D--------------g~I~iwd~~~g~~~~~ 673 (701)
++.| .+ +.+.+||+.+.+-...
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 6654 32 2478899988765444
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.42 E-value=1 Score=45.94 Aligned_cols=238 Identities=14% Similarity=0.047 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cC--CCCCCCCEEEEEEecC---CCEEEEE-E--CCCcE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LP--DNSFGGRVVRLIYSHS---GDFLVAL-T--QTATH 465 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~--~~~~~~~v~~l~~spd---g~~l~s~-s--~dg~i 465 (701)
.+.++|.|||+++++-...|.|++++.. .+....+. ++ ..........++++|| +..|... + .++.|
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~----~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAK----TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECC----CCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 7899999999988887768999988764 33332222 21 1123567899999995 3344433 2 34455
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEEeC--------------CeEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG--------------GKISI 529 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~sd--------------g~I~i 529 (701)
.-|.......... .....+.+...+..........++|. |.+.++.+| |.|.-
T Consensus 110 ~R~~~~~~~~~~~-----------~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 110 VRMLYDEKKPSGE-----------QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp EEEEBCTTSCTTC-----------CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred EEEEeCCCCcccc-----------cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 5554432110000 00111111111211111234567887 554444322 45555
Q ss_pred EeCCCC---------cEEEEecCCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc------------------eEE
Q 005342 530 FSLETF---------QTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK------------------TKA 580 (701)
Q Consensus 530 wd~~~~---------~~~~~~~~~~~~i~~l~~spdg-~l~~g-s~dg~I~iwd~~~~~------------------~~~ 580 (701)
++.... ..+.. .++. ....++|+|+| +.++- +.|+.=.|--+..+. ++.
T Consensus 179 i~~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred EeCCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 554321 01111 1333 34688999988 43332 233322222222221 122
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 581 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 581 ~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
.+..+......++|. +|.+++..-..+.|....+..+.... ..-. +..+.. ..+..|+..|||.+.++.
T Consensus 257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~-~~e~-~l~~~~---gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 257 QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA-DPQA-FLEGEY---GRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS-CCEE-ESTTTS---SCEEEEEEEETTEEEEEE
T ss_pred ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceec-ceEE-eecCCC---CCccEEEECCCCcEEEEE
Confidence 222222345667775 46666655556667666666543211 1111 222332 778999999999877663
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.36 E-value=0.77 Score=45.84 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=75.1
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK 581 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~ 581 (701)
+..++.|+ + ..+.+||..+.+-... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+....
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 66666665 3 4688999987653221 1111111222222 56 66666554 3689999887754332
Q ss_pred --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-.. +..++... .....+.+ ++++++.
T Consensus 200 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~i~v~ 268 (308)
T 1zgk_A 200 TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPMKHRR----SALGITVH--QGRIYVL 268 (308)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEEEE
T ss_pred CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE---CCCCCCCc----cceEEEEE--CCEEEEE
Confidence 1111111222222 66777777654 569999999864322 22122222 12222222 5666666
Q ss_pred E-ec-----CeEEEEECCCCce
Q 005342 655 I-HE-----GQIDVYEAPTLNH 670 (701)
Q Consensus 655 g-~D-----g~I~iwd~~~g~~ 670 (701)
| .+ ..+.+||+.+.+-
T Consensus 269 GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 269 GGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCBCSSCBCCEEEEEETTTTEE
T ss_pred cCcCCCcccceEEEEcCCCCEE
Confidence 4 32 4588999987653
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.25 E-value=0.37 Score=49.97 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=95.0
Q ss_pred EcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCc-ccc
Q 005342 400 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLE 478 (701)
Q Consensus 400 ~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~-~~g 478 (701)
...+|..++.+-. +.||.-++.. ....+.+..+....-..|..+..+|+|++|+..+ +..|.|..+..+.. ..+
T Consensus 28 ~~~n~t~i~~a~~-n~iR~~~i~~---~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 28 SSQNGTRIVFIQD-NIIRWYNVLT---DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EETTTTEEEEEET-TEEEEEETTT---CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEcCCCEEEEEEC-CEEEEEECCC---CCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcc
Confidence 3456666666555 6777777763 2233444443211233577899999999877764 56888888753221 110
Q ss_pred -ccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-----CCEEEEEe-CCeEEEEeCCCCc--EEEEec-------
Q 005342 479 -EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQ--TLATFA------- 542 (701)
Q Consensus 479 -~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-----~~~l~s~s-dg~I~iwd~~~~~--~~~~~~------- 542 (701)
.....+.++.|....-+ .....+|..+-|+ |..|++-. |+.|++||+.... +. .+.
T Consensus 103 ~~~~~~~q~~ty~l~~~~-------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg 174 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEE-------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFG 174 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC---------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEE
T ss_pred cccccccceeEEEcCCcc-------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccC
Confidence 00122233444432110 1245789999998 66777777 9999999997522 22 222
Q ss_pred --CCCCCeEEEEEcCCC-eEEE--EeCCCcEEEE
Q 005342 543 --NPPPIATYFILLPQD-LFAF--GFDDSSILVH 571 (701)
Q Consensus 543 --~~~~~i~~l~~spdg-~l~~--gs~dg~I~iw 571 (701)
.....|.+++|++++ .+.+ .+++|.|+-.
T Consensus 175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 175 LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 122568899999998 5544 5588998864
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.20 E-value=1.3 Score=45.24 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe
Q 005342 587 NRITCLAYSL-------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 656 (701)
Q Consensus 587 ~~V~~v~~sp-------dg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~ 656 (701)
..+..++|.. +|.++++.-..+.|...++..++...... +..... ..+..+++.|||.+.++.+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~---~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTDRG---QRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGGGC---CCEEEEEECTTSCEEEEEC
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccCCC---CceeEEEECCCCcEEEEEe
Confidence 3567778863 47777777778888888887664322222 211211 5789999999998766543
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.20 E-value=2.5 Score=48.26 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|.++.-..+|..- .|+.+| +..||-. +..............|.++...++|. |-.|+.+| +..||.
T Consensus 24 V~~I~qD~~G~lW-igT~~G-L~ryDG~------~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~---- 89 (758)
T 3ott_A 24 VSCFLQDSEGLIW-IGSNKG-LFSYDGY------STQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNY---- 89 (758)
T ss_dssp EEEEEECTTSCEE-EEESSC-EEEECSS------CEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEET----
T ss_pred EEEEEECCCCCEE-EEECCC-ccccCCC------ceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeC----
Confidence 8899888887654 445555 5556643 11111111112345788888887774 56666655 667754
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEeCCeEEEEeCCCCcEEEEec-----CCCCCeE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-----NPPPIAT 549 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~sdg~I~iwd~~~~~~~~~~~-----~~~~~i~ 549 (701)
.++..... . ......|.++...+..|..++.+.+..+|..+++.. .+. .....|.
T Consensus 90 -----------------~~~~f~~~-~-~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 90 -----------------RADRYEQP-E-TDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIY 149 (758)
T ss_dssp -----------------TTTEECCC-S-CCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEE
T ss_pred -----------------CCCEEECc-c-cCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEE
Confidence 33332210 0 112235766655544566667447889998776543 331 1234688
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEe-ecCC----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 005342 550 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 624 (701)
Q Consensus 550 ~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~-l~~h----~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~ 624 (701)
++...++|.+.+|+.+ -+..+|..+++.... .... ...|.++...+++..|..|+. +-+..+|..+++.....
T Consensus 150 ~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 150 SIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE 227 (758)
T ss_dssp EEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc
Confidence 8888888844456654 578888776654321 1111 124888888877764444443 45888998876432211
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCc
Q 005342 625 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 669 (701)
Q Consensus 625 ~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~ 669 (701)
.+. . ..|.++...++|.+.+.. ++.+.+++..+++
T Consensus 228 ~l~------~---~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 228 AFH------N---NSIKSLALDGNGDLLAGT-DNGLYVYHNDTTP 262 (758)
T ss_dssp EEE------E---EEEEEEEECTTCCEEEEE-TTEEEEECCTTSC
T ss_pred CCC------C---CeEEEEEEcCCCCEEEEe-CCceeEEecCCCc
Confidence 111 1 568888888888776654 5568888876654
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.12 E-value=0.96 Score=45.00 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=55.6
Q ss_pred CCEEEEEe-C---------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCce
Q 005342 516 GSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 578 (701)
Q Consensus 516 ~~~l~s~s-d---------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~ 578 (701)
+..++.|+ + ..+.+||..+.+-...-....... .+++.. ++ .++.|+.+ ..+.+||+.+.+.
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 66666664 2 348899998775332211111111 222222 55 66665543 3689999988754
Q ss_pred EEe--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCee
Q 005342 579 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKK 620 (701)
Q Consensus 579 ~~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~ 620 (701)
... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 229 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 229 KMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 332 2211112223333 67777778754 5789999988653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.08 E-value=1.1 Score=44.48 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe-
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK- 581 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~- 581 (701)
+..++.|+ + ..+.+||..+.+-...-....... .+++. -++ .++.|+.+ ..+.+||+.+.+....
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 66666665 4 468999998775432211111111 12222 255 66666654 4699999988765432
Q ss_pred -ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342 582 -LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK 619 (701)
Q Consensus 582 -l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~ 619 (701)
+.........+. -++++++.|+.+ ..|.+||..+.+
T Consensus 239 ~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 SMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111111112222 367777777655 468899998864
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.07 E-value=0.69 Score=45.98 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=91.8
Q ss_pred CCCeEEEEcCC-----CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 403 DADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 403 dg~~l~s~s~d-----~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
++..++.|+.+ ..+.+||.. +.+...+. +..........+ .-+++.++.|+.++.-.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~----~~~W~~~~-~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~--------- 124 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPV----KDQWTSVA-NMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLS--------- 124 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETT----TTEEEEEC-CCSSCCBSCEEE--EETTEEEEEEEECSSCEEE---------
T ss_pred CCEEEEEeCcCCCccccceEEECCC----CCceeeCC-CCCccccceEEE--EECCEEEEEcCCCCCccCc---------
Confidence 66777777754 357788876 44433333 111111111222 2356666777654321110
Q ss_pred cccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEecCCEEEEEe-C-------CeEEEEeCCCCcEEEE--ecCCCC
Q 005342 478 EEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALRGSHLFSAS-G-------GKISIFSLETFQTLAT--FANPPP 546 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s~~~l~s~s-d-------g~I~iwd~~~~~~~~~--~~~~~~ 546 (701)
.+..||+.+++-... .+. ........+.+.+..++.|+ + ..+.+||..+.+-... +.....
T Consensus 125 -------~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 196 (302)
T 2xn4_A 125 -------SVEAYNIKSNEWFHVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS 196 (302)
T ss_dssp -------EEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB
T ss_pred -------eEEEEeCCCCeEeecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc
Confidence 122345555552211 011 11112222222366666664 2 3488999987653322 221111
Q ss_pred CeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEE
Q 005342 547 IATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVW 613 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~-----~I~vw 613 (701)
. .+++.. ++ .++.|+.+ ..+.+||+.+.+.... +........ ++ ..++++++.|+.++ .+.+|
T Consensus 197 ~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~-~~~~~i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 197 G-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-VC-AVNGLLYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp S-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEECCBCSSSBCCCEEEE
T ss_pred c-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-EE-EECCEEEEECCcCCCcccccEEEE
Confidence 1 222222 55 66666654 3699999988754332 111111111 22 23677777777553 58999
Q ss_pred ECCCCe
Q 005342 614 DAVGWK 619 (701)
Q Consensus 614 d~~~g~ 619 (701)
|..+.+
T Consensus 273 d~~~~~ 278 (302)
T 2xn4_A 273 NPTTDK 278 (302)
T ss_dssp ETTTTE
T ss_pred cCCCCe
Confidence 998864
No 318
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.07 E-value=2.4 Score=47.01 Aligned_cols=151 Identities=7% Similarity=-0.076 Sum_probs=94.0
Q ss_pred CeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEe
Q 005342 508 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK 581 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~~~ 581 (701)
.+..++++ ++.|+.+. .+.|+.+++........+...-.....+++++.+ ++++-+..+.|.+.++........
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l 429 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL 429 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence 34567776 55565555 5788888876543333333233456789999755 666666778999999865432222
Q ss_pred ecCCCCCeEEEEEecC-CCEEEEEe-CCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE--ec
Q 005342 582 LKGHQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE 657 (701)
Q Consensus 582 l~~h~~~V~~v~~spd-g~~l~s~s-~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg--~D 657 (701)
+...-....++++.|. |.+.++-. ..+.|...++..... ..+- .... ...+.+++++++..|+.+ ..
T Consensus 430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVLV---NTSL---GWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE---CSSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEEE---eCCC---CCCeeeEEcccCCEEEEEECCC
Confidence 2223346789999996 54444432 246787777765321 1111 1222 567899999988777776 45
Q ss_pred CeEEEEECCC
Q 005342 658 GQIDVYEAPT 667 (701)
Q Consensus 658 g~I~iwd~~~ 667 (701)
+.|...++..
T Consensus 501 ~~I~~~~~dG 510 (619)
T 3s94_A 501 DKIEVMNTDG 510 (619)
T ss_dssp TEEEEEESSS
T ss_pred CEEEEEecCC
Confidence 6788888843
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.92 E-value=1.5 Score=44.85 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred CCeEEEEeCCC--CcE-EEEecCC-----CCCeEEEEEcC--CC---eEEEEeC--CCcEEEEeCCCC----ceEEeecC
Q 005342 524 GGKISIFSLET--FQT-LATFANP-----PPIATYFILLP--QD---LFAFGFD--DSSILVHCPCTK----KTKAKLKG 584 (701)
Q Consensus 524 dg~I~iwd~~~--~~~-~~~~~~~-----~~~i~~l~~sp--dg---~l~~gs~--dg~I~iwd~~~~----~~~~~l~~ 584 (701)
+|.|.++|.++ ++. .-.+.+. .-....+.+.+ +| ++++... +++|.+|++... ..+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999873 222 1123321 12456677655 34 4444444 457777766542 23344544
Q ss_pred CC-CCeEEEEEecCCCEEEEEeC-----------------CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEc
Q 005342 585 HQ-NRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 646 (701)
Q Consensus 585 h~-~~V~~v~~spdg~~l~s~s~-----------------D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~s 646 (701)
.. ...+.+++.++|.+.++... .|.|+-+|. ++. ..... +- ...+.++||
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~--~~~~~----~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV--RVVAE----GF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC--EEEEE----EE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE--EEeec----CC----cccCcceEC
Confidence 22 36899999999998877641 245555554 321 11122 11 456999999
Q ss_pred CCCCEEEEE--ecCeEEEEECCC
Q 005342 647 PDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 647 pdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
||++.++++ ..+.|..|++..
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCEEEEEeCCCCeEEEEEECC
Confidence 999988876 478899999863
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.78 E-value=2.5 Score=44.85 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEee-cCCC----CCCCCEEEEEEecC---CCEEEEEE
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDN----SFGGRVVRLIYSHS---GDFLVALT 460 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~-~~~~----~~~~~v~~l~~spd---g~~l~s~s 460 (701)
.+.++|.|+|+++++-...+.|.+++.. .+....+. ++.. ........++|+|| +..|..+.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~----~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPE----SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTT----TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECC----CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 7899999999988876655578877754 23332222 2211 13467889999996 55554443
No 321
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.60 E-value=0.0058 Score=47.61 Aligned_cols=61 Identities=13% Similarity=0.324 Sum_probs=45.9
Q ss_pred ccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHHhc
Q 005342 6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLS 66 (701)
Q Consensus 6 ~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~ 66 (701)
|++....++|+-+-|++||...||.+++.+|.+|.|+..+ ...=-.-+|+=+|..|+++=.
T Consensus 3 miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 3 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 4444456889999999999999999999999999998874 222345567777777665433
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.57 E-value=4.4 Score=46.17 Aligned_cols=242 Identities=13% Similarity=0.065 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCC--CCCCCEEEEEEecCCCEEEEEECCCcEEEEecCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 472 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 472 (701)
|.++...++|.+.+.. . +.+..++.. .++...+..+.. .....|.++...+++..|..|+. +-+..+|.
T Consensus 148 i~~i~~d~~g~lWigt-~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~-- 218 (758)
T 3ott_A 148 IYSIIRTKDNQIYVGT-Y-NGLCRYIPS----NGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP-- 218 (758)
T ss_dssp EEEEEECTTCCEEEEE-T-TEEEEEETT----TTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET--
T ss_pred EEEEEEcCCCCEEEEe-C-CCHhhCccC----CCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC--
Confidence 7888888888876644 3 347777765 443333222211 11235888888887775555554 34666643
Q ss_pred CCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecC-------C
Q 005342 473 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN-------P 544 (701)
Q Consensus 473 ~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~-------~ 544 (701)
.+++.... .......|.++... ...|..|+++-+.++|..+++....... .
T Consensus 219 -------------------~~~~~~~~--~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 277 (758)
T 3ott_A 219 -------------------STGQIKQT--EAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLT 277 (758)
T ss_dssp -------------------TTTEEEEE--EEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCS
T ss_pred -------------------CCCeEEec--cCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCC
Confidence 44332210 00112357777777 4555566655688899876653322110 1
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEeec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q 005342 545 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 619 (701)
Q Consensus 545 ~~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~ 619 (701)
...|.++..+.+|.|.+|+..| +.++.....-...... .....|.++.-..+|.+-+ |+.+| +..++..++.
T Consensus 278 ~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~ 354 (758)
T 3ott_A 278 NNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGE 354 (758)
T ss_dssp CSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSS
T ss_pred cCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccc
Confidence 2358888888888566666667 5554432211111111 1124688888888887554 44554 6677766542
Q ss_pred eeeeeeeeeccC-CCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCcee
Q 005342 620 KLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 671 (701)
Q Consensus 620 ~~~~~~l~~~~~-~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~ 671 (701)
........ ... ........|.++.-.++|++-+.. ++.+..||..+++..
T Consensus 355 ~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 355 RHDAIWYR-MGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp CCCCEEEC-TTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE
T ss_pred cceeEEec-cCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE
Confidence 11111111 100 000011568888888888765544 678999998877643
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=2.4 Score=42.37 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=75.2
Q ss_pred CCEEEEEe-C-------CeEEEEeCCCCcEEEEecCCCCCe-EEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceE
Q 005342 516 GSHLFSAS-G-------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD------DSSILVHCPCTKKTK 579 (701)
Q Consensus 516 ~~~l~s~s-d-------g~I~iwd~~~~~~~~~~~~~~~~i-~~l~~spdg-~l~~gs~------dg~I~iwd~~~~~~~ 579 (701)
+..++.|+ + ..+.+||..+.+-...-....... .+++. .++ .++.|+. -..+.+||..+.+..
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 66666665 4 358899988765332211111111 12222 456 5555543 236999999887543
Q ss_pred Ee--ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEE
Q 005342 580 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 652 (701)
Q Consensus 580 ~~--l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l 652 (701)
.. +.........+. -++++++.|+.+ ..+.+||+.+.+-. .+..++... .....+. -+++++
T Consensus 189 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~--~~~~i~ 257 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE---VMTEFPQER----SSISLVS--LAGSLY 257 (318)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEE---ECCCCSSCC----BSCEEEE--ETTEEE
T ss_pred ECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEE---ECCCCCCcc----cceEEEE--ECCEEE
Confidence 32 111111112222 366777777643 35789999886422 222222222 1222222 246666
Q ss_pred EEE-ec--------------CeEEEEECCCCceeeee
Q 005342 653 LSI-HE--------------GQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 653 ~sg-~D--------------g~I~iwd~~~g~~~~~l 674 (701)
+.| .+ ..+.+||+.+.+-...+
T Consensus 258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 294 (318)
T 2woz_A 258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML 294 (318)
T ss_dssp EECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred EECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence 664 32 35889999887655443
No 324
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.41 E-value=0.011 Score=46.27 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.5
Q ss_pred ccccccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCch
Q 005342 6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFF 44 (701)
Q Consensus 6 ~~~~~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~ 44 (701)
|.|. ..||..||-.||.|.||..||-+|+.||++.-
T Consensus 1 msit---sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSIT---SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCC---HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 3466 89999999999999999999999999999875
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.40 E-value=3.1 Score=43.31 Aligned_cols=220 Identities=11% Similarity=0.060 Sum_probs=126.0
Q ss_pred CCCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEec
Q 005342 342 NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKL 421 (701)
Q Consensus 342 ~d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~ 421 (701)
...++.|+|+++...+... . -...|..=.|-.+ +.|+..+. ..|+.|++
T Consensus 84 ag~~lQiFnle~K~klks~-------------~----------------~~e~VvfWkWis~-~~l~lVT~-taVyHWsi 132 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAH-------------T----------------MTDDVTFWKWISL-NTVALVTD-NAVYHWSM 132 (494)
T ss_dssp ETTEEEEEETTTTEEEEEE-------------E----------------CSSCCCEEEEEET-TEEEEECS-SEEEEEES
T ss_pred cCCeEEEEchHHhhhhcce-------------e----------------cCCCceEEEecCC-CeEEEEcC-CeeEEecc
Confidence 3688999999888776651 1 1112334445433 24444443 57999999
Q ss_pred cccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---C----CcEEEEecCCCCccccccccceeeEEeeCCCC
Q 005342 422 QLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 494 (701)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---d----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~ 494 (701)
.....+.+.....-. -....|..-..+++.++++..|- + |.+.+|.. +.+
T Consensus 133 ~~~s~P~kvFdR~~~--L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~---------------------er~ 189 (494)
T 1bpo_A 133 EGESQPVKMFDRHSS--LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------------------DRK 189 (494)
T ss_dssp SSSCCCEEEEECCGG--GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES---------------------TTC
T ss_pred cCCCCchhheecchh--cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec---------------------ccc
Confidence 642222222211111 12467888888899998775543 2 45555544 333
Q ss_pred eEEeecccCCCCCCeEEEEecC-----CEEEEEe----CCeEEEEeCCCC---c------EEEEecCC---CCCeEEEEE
Q 005342 495 LVMTNDIAADPKDSISCFALRG-----SHLFSAS----GGKISIFSLETF---Q------TLATFANP---PPIATYFIL 553 (701)
Q Consensus 495 ~~~~~~~~~~~~~~v~~l~~s~-----~~l~s~s----dg~I~iwd~~~~---~------~~~~~~~~---~~~i~~l~~ 553 (701)
.-.. + .+|......+...| ..++.+. .+.+++.++... . .+..+..+ .+-..++.+
T Consensus 190 ~sQ~--i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 190 VSQP--I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp CEEE--E-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred ccch--h-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 2111 1 35543333333331 1233333 378999998532 1 11111111 333467888
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 554 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 554 spdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
|+.. .+..-+.-|.|++||+.++.++..-+-....|...+-+....=++.....|.|.--.+...
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 8887 8888899999999999999998766655556666666555445555667777766665543
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.34 E-value=2.6 Score=42.11 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=124.1
Q ss_pred CCeEEEEeccCCccccccccccCCCCCCCCCCcccccCCCCCCCccccCCCceEEEEEcCCCCeEEEEcCCCcEEEEecc
Q 005342 343 NETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQ 422 (701)
Q Consensus 343 d~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~D~~~~~~~l~~h~~V~~l~~spdg~~l~s~s~d~~v~iw~~~ 422 (701)
..++.++|+++...+... . -...|..=.|-.+ +.|+..+. ..|+.|++.
T Consensus 86 g~~LQiFnletK~klks~-------------~----------------~~e~VvfWkWis~-~~L~lVT~-taVyHWs~~ 134 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAH-------------T----------------MTDDVTFWKWISL-NTVALVTD-NAVYHWSME 134 (365)
T ss_dssp TTEEEEEETTTTEEEEEE-------------E----------------CSSCEEEEEECSS-SEEEEEES-SEEEEEESS
T ss_pred CCeEEEechHHhhhhcce-------------e----------------cCCccEEEEecCC-CeEEEEcC-CcEEEEccc
Confidence 678999999888776651 1 1122445556443 23443333 579999997
Q ss_pred ccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEEC---C----CcEEEEecCCCCccccccccceeeEEeeCCCCe
Q 005342 423 LINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL 495 (701)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~---d----g~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~ 495 (701)
....+.+.....- .-....|..-..+++.++++..+- + |.+.+|.. +.+.
T Consensus 135 ~~s~P~kvFdR~~--~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~---------------------er~~ 191 (365)
T 2xzh_A 135 GESQPVKMFDRHS--SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------------------DRKV 191 (365)
T ss_dssp TTCCCEEEEECCG--GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET---------------------TTTE
T ss_pred CCCCCceeeecch--hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee---------------------cccc
Confidence 4222222222111 112467888888899998776553 2 45555543 3333
Q ss_pred EEeecccCCCCCCeEEEEecCC-----EEEEEe----CCeEEEEeCCCC---c------EEEEecCC---CCCeEEEEEc
Q 005342 496 VMTNDIAADPKDSISCFALRGS-----HLFSAS----GGKISIFSLETF---Q------TLATFANP---PPIATYFILL 554 (701)
Q Consensus 496 ~~~~~~~~~~~~~v~~l~~s~~-----~l~s~s----dg~I~iwd~~~~---~------~~~~~~~~---~~~i~~l~~s 554 (701)
... + .+|......+...|+ .++.+. .+.+++.++... . .+..+-.+ .+-.-++.+|
T Consensus 192 sQ~--i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs 268 (365)
T 2xzh_A 192 SQP--I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 268 (365)
T ss_dssp EEE--E-CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE
T ss_pred cce--e-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEec
Confidence 211 1 344333222222211 233332 268999998432 1 11112112 3334678888
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 005342 555 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 618 (701)
Q Consensus 555 pdg-~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g 618 (701)
+.. .+..-+.-|.|++||+.++.++..-+--...|...+-+....=++.....|.|.--.+...
T Consensus 269 ~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 269 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred ccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 877 8888899999999999999998766655566666565554444555567777766665553
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.17 E-value=2.9 Score=41.65 Aligned_cols=231 Identities=7% Similarity=0.019 Sum_probs=124.6
Q ss_pred EcCCCCeEEEEc--CCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCC------------cE
Q 005342 400 SLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------------TH 465 (701)
Q Consensus 400 ~spdg~~l~s~s--~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------------~i 465 (701)
|+++|..++... .++.+...+.+ .....+++- . .+--++++|.+|+.+..+. .-
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d----g~~~~~l~~------~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID----GSNIHKLSN------D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT----SCSCEEEEE------E--EEEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC----CCCCEEccC------C--ceeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence 456777776654 24555555544 333344331 1 2345689999988876532 12
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEecCCEEEEEe-----CCeEEEEeCCCCcEEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-----GGKISIFSLETFQTLAT 540 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s~~~l~s~s-----dg~I~iwd~~~~~~~~~ 540 (701)
.|| ..+.+.+.... +. ......++..+++|+-.. +..|+..++... ....
T Consensus 89 ~Iy-------------------~i~~dg~~~~~--l~---~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~ 143 (302)
T 3s25_A 89 SLC-------------------RIKRNGHGSTV--LD---PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKK 143 (302)
T ss_dssp EEE-------------------EEETTSCCCEE--EE---CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEE
T ss_pred eEE-------------------EEeCCCCcceE--ee---cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEE
Confidence 222 22444443211 11 122233444477776553 357777888543 3344
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECC
Q 005342 541 FANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAV 616 (701)
Q Consensus 541 ~~~~~~~i~~l~~spdg-~l~~gs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D--~~I~vwd~~ 616 (701)
+..+.. .+++|++ .|+-.+. ...|+..++..+.....+. +... ..++|++.+|+-...+ ..|..-++.
T Consensus 144 lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 144 IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 443322 4567888 5554444 6789999987665444333 2222 3466999988876543 467777777
Q ss_pred CCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEEe---cCeEEEEECCCCceeeeeee--eeEEEEEeeEEeee
Q 005342 617 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQVLL--ISHIMFVQIVVKFH 690 (701)
Q Consensus 617 ~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg~---Dg~I~iwd~~~g~~~~~l~~--i~~~~fs~~~~~f~ 690 (701)
.+.. ..+. . ..+ ..|+|++.+|.-+. .+.|..-++. |...+.+.. +.+++...+.+.|-
T Consensus 216 G~~~---~~Lt----~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~~~~~i~i~~d~Iy~t 279 (302)
T 3s25_A 216 NPNP---VVLT----E-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKGEFCNINVTSQYVYFT 279 (302)
T ss_dssp SCCC---EECS----C-----SCE--EEEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEESCEEEEEECSSEEEEE
T ss_pred CCCe---EEEe----C-----CCc--ceEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCCccceEEEeCCEEEEE
Confidence 6542 1221 1 223 34889999887642 3567777774 443344433 54544444444443
No 328
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.14 E-value=5.2 Score=44.43 Aligned_cols=156 Identities=8% Similarity=-0.010 Sum_probs=98.3
Q ss_pred CeEEEEec--CCEEEEEe--CCeEEEEeCCCCcEEEEecC------CCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 005342 508 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN------PPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 575 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~s--dg~I~iwd~~~~~~~~~~~~------~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~ 575 (701)
.+..++++ ++.|+.+. .+.|+.++.........+.. ....+..+++...+ +.++.+..+.|.+.++.
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 45667777 56666655 57888888754332233322 23357899999986 55677778899999975
Q ss_pred CceEEee-cCCCCCeEEEEEec-CCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCE
Q 005342 576 KKTKAKL-KGHQNRITCLAYSL-SLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 651 (701)
Q Consensus 576 ~~~~~~l-~~h~~~V~~v~~sp-dg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~ 651 (701)
|+....+ ........++++.| .|.++.+-.... .|...++..... ..+- .... ...+.+++.+++..
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~---~~~l---~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLF---FSGL---SKPIALALDSRLGK 490 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEE---CSSC---SCEEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEE---eccC---CCccEEEEeCCCCE
Confidence 4444433 23345689999999 566555543333 677777765321 1111 1111 56799999999888
Q ss_pred EEEE--ecCeEEEEECCCCceeeee
Q 005342 652 LLSI--HEGQIDVYEAPTLNHTSQV 674 (701)
Q Consensus 652 l~sg--~Dg~I~iwd~~~g~~~~~l 674 (701)
|+.+ ..+.|...++. |+..+++
T Consensus 491 LYw~D~~~~~I~~~~~d-G~~r~~~ 514 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLS-GANRIVL 514 (628)
T ss_dssp EEEEETTTTEEEEEETT-SCSCEEE
T ss_pred EEEEeCCCCEEEEEeCC-CCceEEE
Confidence 8776 35789999984 4444444
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.47 E-value=3.1 Score=41.25 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=55.1
Q ss_pred CCEEEEEe-C-----CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEe
Q 005342 516 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK 581 (701)
Q Consensus 516 ~~~l~s~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~~ 581 (701)
+..++.|+ + ..+.+||+.+.+-... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 66666665 4 4689999877653221 1111111222222 56 66666654 4699999988754432
Q ss_pred --ecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCe
Q 005342 582 --LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK 619 (701)
Q Consensus 582 --l~~h~~~V~~v~~spdg~~l~s~s~D-----~~I~vwd~~~g~ 619 (701)
+.........+. -++++++.|+.+ ..+.+||..+.+
T Consensus 247 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 247 APMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111111112222 266777777643 468899998864
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.077 Score=53.99 Aligned_cols=152 Identities=8% Similarity=0.019 Sum_probs=81.5
Q ss_pred CEEEEE-e-CCeEEEEeCCCCcEEEEecCC----CCCeEE---EEE------cCCCeEEEEeCCCcEEEEeCCCCceEEe
Q 005342 517 SHLFSA-S-GGKISIFSLETFQTLATFANP----PPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAK 581 (701)
Q Consensus 517 ~~l~s~-s-dg~I~iwd~~~~~~~~~~~~~----~~~i~~---l~~------spdg~l~~gs~dg~I~iwd~~~~~~~~~ 581 (701)
..++.. + ||.+..+|..+|.....+... .+++.. ..+ +.++.+++|+.+|.++..|+++|+.+.+
T Consensus 57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 344443 4 899999999888655544311 122221 001 1233889999999999999999999988
Q ss_pred ecCCC--CCe-----EEEEEe-----cCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCe-EEEEEcCC
Q 005342 582 LKGHQ--NRI-----TCLAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPD 648 (701)
Q Consensus 582 l~~h~--~~V-----~~v~~s-----pdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v-~~v~~spd 648 (701)
+.... +.+ .|.... -.+..++.+..+..+.+.+ ++|+ .....+........ ...+ .+-..+.|
T Consensus 137 ~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~--~~~~~~~~~~s~D 212 (339)
T 2be1_A 137 FGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL--DVPLALQNTFSKD 212 (339)
T ss_dssp ESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT--THHHHTTCSSCSS
T ss_pred EecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc--ccccccccccccC
Confidence 86321 110 111110 1234666677777777766 4453 22111111110000 0000 00011245
Q ss_pred CCEEEEEecCeEEEEECCCCceee
Q 005342 649 QIHLLSIHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 649 g~~l~sg~Dg~I~iwd~~~g~~~~ 672 (701)
+.+++++.||.|.-+|..+|+.+-
T Consensus 213 g~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 213 GMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SCCEEEETTTEEEEECSTTCCEEE
T ss_pred CcEEEECCCCEEEEEECCCCcEEE
Confidence 677666688888888888888664
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.34 E-value=5.2 Score=40.77 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=39.8
Q ss_pred CCeEEEEEc-------CCC-eEEEEeCCCcEEEEeCCCC-ceE--Eee-cCCCCCeEEEEEecCCCEEEEEe
Q 005342 546 PIATYFILL-------PQD-LFAFGFDDSSILVHCPCTK-KTK--AKL-KGHQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 546 ~~i~~l~~s-------pdg-~l~~gs~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~v~~spdg~~l~s~s 605 (701)
.....+++. .+| ++++....+.|...++... +.. ..+ .+-...+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 567 6666667778988888753 332 223 23345789999999998666553
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.33 E-value=4.6 Score=40.13 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=80.9
Q ss_pred EEEEecCCEEEEEe--C-------------CeEEEEeCCCCcEEEEecCCCCCeEEEEEcCCC-eEEEEe----CCCcEE
Q 005342 510 SCFALRGSHLFSAS--G-------------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSIL 569 (701)
Q Consensus 510 ~~l~~s~~~l~s~s--d-------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~spdg-~l~~gs----~dg~I~ 569 (701)
..+...|++|+.+. + ..|+..++..++.. .+.. .. ...+++++ .|+-.. .+..|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 33433377777665 2 36788888665432 2321 11 23677888 666554 344777
Q ss_pred EEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 570 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 570 iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~-D~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
..++.... ...+..+.. .+++|+++.|+-.+. ..+|++-++..+... .+. .+ ... ..++|+
T Consensus 133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~---~~------~~~-~~~~P~ 194 (302)
T 3s25_A 133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY---DC------NCY-KPVVLD 194 (302)
T ss_dssp EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE---CS------CEE-EEEEEE
T ss_pred EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe---CC------Ccc-ceeeec
Confidence 77876443 344443432 456888998886665 678999998876522 221 12 222 235699
Q ss_pred CCEEEEE--ec-CeEEEEECCCCc
Q 005342 649 QIHLLSI--HE-GQIDVYEAPTLN 669 (701)
Q Consensus 649 g~~l~sg--~D-g~I~iwd~~~g~ 669 (701)
+.+|+-. .+ ..|..-++..+.
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CCEEEEEEcCCCcEEEEEECCCCC
Confidence 9988864 22 367777776554
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.32 E-value=0.93 Score=46.43 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce--EEeec---CCCCCeEEEEEecC---CCEEE-EEeCC-----CeEE
Q 005342 546 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKT--KAKLK---GHQNRITCLAYSLS---LNVLV-SSGAD-----AQLC 611 (701)
Q Consensus 546 ~~i~~l~~spdg~l~~gs~dg~I~iwd~~~~~~--~~~l~---~h~~~V~~v~~spd---g~~l~-s~s~D-----~~I~ 611 (701)
.....++|.|+|.++++..+|.|++++ +++. +..+. ........++|+|+ +..|+ +-+.. +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999333445669999998 4432 22221 12346889999998 44444 33332 6788
Q ss_pred EEECCCCeeeeeee-eeecc--CCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 612 VWDAVGWKKLCSKF-LHSFQ--TGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 612 vwd~~~g~~~~~~~-l~~~~--~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.|+...+.....+. +..++ .+.. .....++|.|||.+.++
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 88887543211122 22233 1111 23368999999977666
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.27 E-value=12 Score=44.69 Aligned_cols=205 Identities=11% Similarity=0.035 Sum_probs=104.1
Q ss_pred eEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecC------CCEEEEEEC-CCcEEEEecCCCCcccc
Q 005342 406 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQSLE 478 (701)
Q Consensus 406 ~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spd------g~~l~s~s~-dg~i~vwd~~~~~~~~g 478 (701)
.++.++ ++.+.++.++ .++.....- ..-...|.|+++.|. ++++++|.. |++++|+++..
T Consensus 525 ~vvva~-g~~l~~fel~----~~~L~~~~~--~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~------ 591 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIH----PQELRQISH--TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS------ 591 (1158)
T ss_dssp EEEEEE-TTEEEEEEEE----TTEEEEEEE--EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT------
T ss_pred EEEEEE-CCEEEEEEee----CCceeeecc--cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC------
Confidence 455554 4677777775 233222110 012467999999864 368899986 99999997732
Q ss_pred ccccceeeEEeeCCCCeEEe-ecccCCCCCCeEEEEec----CCEEEEEe-CCeEEEE--eCCCCcEEE---EecCCCCC
Q 005342 479 EENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR----GSHLFSAS-GGKISIF--SLETFQTLA---TFANPPPI 547 (701)
Q Consensus 479 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~l~~s----~~~l~s~s-dg~I~iw--d~~~~~~~~---~~~~~~~~ 547 (701)
-+.+. ..+. ......++.+. ..+|..|- ||.+..+ |..+|.... .+-| ..+
T Consensus 592 ---------------l~~~~~~~L~--~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~p 653 (1158)
T 3ei3_A 592 ---------------FELLHKEMLG--GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQP 653 (1158)
T ss_dssp ---------------CCEEEEEECC--SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSC
T ss_pred ---------------CCeEEEEECC--CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCc
Confidence 11111 1111 11234444444 33566666 8887544 444554332 2333 345
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-EeecCCCCCe-EEEEEecC--CCEEEEEeCCCeEEEEECCCCeee
Q 005342 548 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKL 621 (701)
Q Consensus 548 i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~~~-~~l~~h~~~V-~~v~~spd--g~~l~s~s~D~~I~vwd~~~g~~~ 621 (701)
+.-..+...| .+++.+ +....+|.-+ ++.. ..+. -..+ ....|+.. ..-++..+ ++.++|..+..-...
T Consensus 654 v~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~ 728 (1158)
T 3ei3_A 654 TVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKL 728 (1158)
T ss_dssp CEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSE
T ss_pred eEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCe
Confidence 5444454445 333333 3444444423 3322 1121 1123 33355442 23344333 456999888653322
Q ss_pred eeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 622 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 622 ~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
.+++++-+ ..+..++++|+.+.++.
T Consensus 729 ---~~~~ipL~-----~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 729 ---HIRTVPLY-----ESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp ---EEEEEECS-----SEEEEEEEEGGGTEEEE
T ss_pred ---eEEEEeCC-----CCceEEEEcCCCCEEEE
Confidence 23323333 56789999998776554
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.12 E-value=3.3 Score=41.20 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=53.2
Q ss_pred CCEEEEEe-C------CeEEEEeCCCCcEEE--EecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEE
Q 005342 516 GSHLFSAS-G------GKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA 580 (701)
Q Consensus 516 ~~~l~s~s-d------g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~spdg-~l~~gs~dg-----~I~iwd~~~~~~~~ 580 (701)
+..++.|+ + ..+.+||..+.+-.. .+...... .+++.. ++ .++.|+.++ .+.+||+.+.+...
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 66666665 2 468999998765322 11111111 222222 55 666665544 58899998875433
Q ss_pred ee--cCCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEECCCCe
Q 005342 581 KL--KGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWK 619 (701)
Q Consensus 581 ~l--~~h~~~V~~v~~spdg~~l~s~s~D--------------~~I~vwd~~~g~ 619 (701)
.- .........+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 227 ~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 227 FEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 21 11111112222 366777777653 247788888754
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.81 E-value=5.8 Score=39.40 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=52.3
Q ss_pred CCEEEEEe-C------CeEEEEeCCCCcEEEE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEE
Q 005342 516 GSHLFSAS-G------GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA 580 (701)
Q Consensus 516 ~~~l~s~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~spdg-~l~~gs~d-----g~I~iwd~~~~~~~~ 580 (701)
+..++.|+ + ..+.+||..+.+-... +...... .+++.. ++ .++.|+.+ ..+.+||+.+.+...
T Consensus 159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 66666664 2 3589999987753322 1111111 222332 45 55555543 257889988775433
Q ss_pred e--ecCCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEECCCCe
Q 005342 581 K--LKGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWK 619 (701)
Q Consensus 581 ~--l~~h~~~V~~v~~spdg~~l~s~s~D--------------~~I~vwd~~~g~ 619 (701)
. +.........+ ..++++++.|+.+ ..+.+||+.+.+
T Consensus 237 ~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 237 MTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2 21111111222 2356777766643 357888888754
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.80 E-value=3.8 Score=43.42 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCeEEEEec--CCEEEEEeC-CeEEEEeCCCCcE--EEEecC------CCCCeEEEEEcCC----C-eEEEEeC------
Q 005342 507 DSISCFALR--GSHLFSASG-GKISIFSLETFQT--LATFAN------PPPIATYFILLPQ----D-LFAFGFD------ 564 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~sd-g~I~iwd~~~~~~--~~~~~~------~~~~i~~l~~spd----g-~l~~gs~------ 564 (701)
.....++|. |+++++-.. +.|++++..+++. +..+.. .......|+++|+ + +.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356789998 665555555 5799998765543 223321 2345679999995 4 3333322
Q ss_pred ------CCcEEEEeCCCC-------ceE-EeecC-CCCCeEEEEEecCCCEEEEEeC
Q 005342 565 ------DSSILVHCPCTK-------KTK-AKLKG-HQNRITCLAYSLSLNVLVSSGA 606 (701)
Q Consensus 565 ------dg~I~iwd~~~~-------~~~-~~l~~-h~~~V~~v~~spdg~~l~s~s~ 606 (701)
...|.-++...+ +.+ ..+.. .......++|.|||.+.++.++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666654321 111 11221 1124689999999997776553
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.67 E-value=0.65 Score=43.64 Aligned_cols=145 Identities=12% Similarity=0.019 Sum_probs=80.8
Q ss_pred CCeEEEEec--CCEEEEEeCCeEEEEeCCCCcE------EEEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 005342 507 DSISCFALR--GSHLFSASGGKISIFSLETFQT------LATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 576 (701)
Q Consensus 507 ~~v~~l~~s--~~~l~s~sdg~I~iwd~~~~~~------~~~~~~-~~~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~ 576 (701)
..+.+++|+ |.+.++ .+|.++-.+..+... -..+-. --....++.|+|+| +.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 367789999 554444 888888877655221 111110 01114789999999 5555 5699998886442
Q ss_pred ce-------EEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeee-eeeeeeccCCCCCCCCCeEEEEEcCC
Q 005342 577 KT-------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPD 648 (701)
Q Consensus 577 ~~-------~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~-~~~l~~~~~~~~~~~~~v~~v~~spd 648 (701)
.. ...-.+--..+..+.|.|+|.+-+.. |+.++-+...++.... ...-..+-.+.. ..-+.+.|.|+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~~ 192 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSSV 192 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECTT
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECCC
Confidence 11 11111111467999999999866655 7776554444221000 000000110111 34455779999
Q ss_pred CCEEEEEecCeE
Q 005342 649 QIHLLSIHEGQI 660 (701)
Q Consensus 649 g~~l~sg~Dg~I 660 (701)
|.+.++. ++.+
T Consensus 193 G~l~~v~-~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ-GGKF 203 (236)
T ss_dssp SCEEEEE-TTEE
T ss_pred CcEEEEe-CCeE
Confidence 9888777 7744
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.48 E-value=1.8 Score=51.80 Aligned_cols=221 Identities=10% Similarity=0.061 Sum_probs=125.5
Q ss_pred CcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccccccceeeEEeeCCC
Q 005342 414 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 493 (701)
Q Consensus 414 ~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~~~~~~~i~~~d~~~ 493 (701)
.+|.|.|+.+... ..+ .+-..-+...+|..+.++. -...++.|+|+++.
T Consensus 48 ~~vvIidl~~~~~---~~r-------rpi~AdsAIMnP~~~iiAL-rag~~lQiFnl~~k-------------------- 96 (1630)
T 1xi4_A 48 AQVVIIDMNDPSN---PIR-------RPISADSAIMNPASKVIAL-KAGKTLQIFNIEMK-------------------- 96 (1630)
T ss_pred ceEEEEECCCCCC---ccc-------ccccchhhccCCCcceEEE-ecCCeEEEeehHHh--------------------
Confidence 4788888874221 111 1112223345677664443 34678899977432
Q ss_pred CeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCC-cEEEEecCC----CCCeEEEEEcCCC--eEEEEe--
Q 005342 494 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANP----PPIATYFILLPQD--LFAFGF-- 563 (701)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~-~~~~~~~~~----~~~i~~l~~spdg--~l~~gs-- 563 (701)
..+.. . ....+|.-..|- .+.|+..++..|+-|++... .+++.|..| ...|..-..+++. .+++|-
T Consensus 97 -~klks-~--~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 97 -SKMKA-H--TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred -hhhcc-c--ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 21111 0 123467677777 88888888999999999642 344444433 4567778888888 444443
Q ss_pred ----CCCcEEEEeCCCCceEEeecCCCCCeEEEEEe--c-CCCEEEEEeC---CCeEEEEECCCC---ee-eeeeeeee-
Q 005342 564 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--L-SLNVLVSSGA---DAQLCVWDAVGW---KK-LCSKFLHS- 628 (701)
Q Consensus 564 ----~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~s--p-dg~~l~s~s~---D~~I~vwd~~~g---~~-~~~~~l~~- 628 (701)
-.|.+.+|..+.+ .-+.+.||.+....+... + ..+.++.+.. .++++|-++... .. ...+...-
T Consensus 173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 4478899987543 456677776654443332 1 1223333322 368888888542 11 11111110
Q ss_pred ccCCCCCCCCCeEEEEEcCCCCEEEE-EecCeEEEEECCCCceee
Q 005342 629 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 672 (701)
Q Consensus 629 ~~~~~~~~~~~v~~v~~spdg~~l~s-g~Dg~I~iwd~~~g~~~~ 672 (701)
++.... ..-..++..|+....+.. ..-|.|+++|+.||.++-
T Consensus 252 ~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CCcccc--cCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 111110 122356777877666555 688999999999998754
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.10 E-value=0.26 Score=46.35 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce------EEee-c-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 546 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------KAKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 546 ~~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~------~~~l-~-~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
..+..++|+|+| +.++ .+|.++-.+..+... -..+ . +... ..++.|.|+|.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 367799999998 5555 778888888755221 1111 0 1112 578899999987776 55999988875
Q ss_pred CCeeeeeeeee---eccCCCCCCCCCeEEEEEcCCCCEEEEEecCeEEEEECC
Q 005342 617 GWKKLCSKFLH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 666 (701)
Q Consensus 617 ~g~~~~~~~l~---~~~~~~~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~ 666 (701)
+.... ..+. .+-.+.- ..+..|.|.|+|.+.++. |+.++-+...
T Consensus 116 ~~~~~--~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 116 QSDTD--NWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp CSTTC--CHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred cCCCC--ceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 42110 1110 0111111 467999999999998888 8886544443
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.37 E-value=4.2 Score=41.26 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=28.1
Q ss_pred cEEEEeCCCCceE--EeecCCCCCeEEEEEecCCCEEEEEeCCC------eEEEEECCCCeeee
Q 005342 567 SILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSGADA------QLCVWDAVGWKKLC 622 (701)
Q Consensus 567 ~I~iwd~~~~~~~--~~l~~h~~~V~~v~~spdg~~l~s~s~D~------~I~vwd~~~g~~~~ 622 (701)
.+.+||+.+.+.. ..+......-. +...++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 5789998876533 22322222212 2334777778787543 46667888875443
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.15 E-value=5.4 Score=39.14 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|..++-.... .++. . ||.|..|-.+. .+++-. |.. ....|..++...+. .++.. ||.+..|-...
T Consensus 26 i~~ia~G~~h-~~~l-~-~G~v~~wG~n~---~Gqlg~---p~~-~~~~i~~ia~G~~h--s~~l~-~G~v~~wG~n~-- 90 (282)
T 3qhy_B 26 VDAIAGGYFH-GLAL-K-GGKVLGWGANL---NGQLTM---PAA-TQSGVDAIAAGNYH--SLALK-DGEVIAWGGNE-- 90 (282)
T ss_dssp CCEEEECSSE-EEEE-E-TTEEEEEECCS---SSTTSC---CGG-GGSCCCEEEECSSE--EEEEE-TTEEEEEECCT--
T ss_pred CcEEEeCCCe-EEEE-E-CCEEEEEeCCC---CCCCCC---Ccc-CCCCEEEEEeCCCE--EEEEE-CCEEEEeeCCC--
Confidence 5555554432 2333 4 79999998764 222211 111 12356666655433 23334 89999885321
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 553 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~ 553 (701)
.+++- ++..-...|..++.. ...++.. +|.|+.|-....-.+..-......|..++.
T Consensus 91 ------------------~Gqlg---~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~ 148 (282)
T 3qhy_B 91 ------------------DGQTT---VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG 148 (282)
T ss_dssp ------------------TSTTC---CCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred ------------------CCCCC---CCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc
Confidence 11110 000112467777777 5566666 999999976542211111112345777776
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeeeeeccCCC
Q 005342 554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 633 (701)
Q Consensus 554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l~~~~~~~ 633 (701)
..+..++. . ||.|+.|-......+..-..-...|..++-..+.. ++. .||.|+.|-....-... .+.. .
T Consensus 149 G~~~~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~~-----~ 217 (282)
T 3qhy_B 149 GVYTALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPTE-----A 217 (282)
T ss_dssp CSSEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCGG-----G
T ss_pred ccCEEEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCcc-----c
Confidence 65542222 3 79999997654221111111134577776654333 333 59999999876531111 0111 1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEecCeEEEEECCCCceeeeeeeeeEE
Q 005342 634 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQVLLISHI 680 (701)
Q Consensus 634 ~~~~~~v~~v~~spdg~~l~sg~Dg~I~iwd~~~g~~~~~l~~i~~~ 680 (701)
. ..|..|+...+...++ . ||.++.|-......+....+|.++
T Consensus 218 ~---~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~gq~~v~~~v~~i 259 (282)
T 3qhy_B 218 L---SGVSAIASGEWYSLAL-K-NGKVIAWGSSRTAPSSVQSGVSSI 259 (282)
T ss_dssp G---SSCCEEEECSSCEEEE-E-TTEEEEESTTCCCCGGGSSCEEEE
T ss_pred C---CCceEEEcCCCEEEEE-E-CCEEEEecCCCCccccCCCCcEEE
Confidence 1 4567777665444433 4 999999977554333332234433
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.98 E-value=11 Score=37.90 Aligned_cols=140 Identities=10% Similarity=-0.104 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCcEE--EEecCCCCCeEEEEEcCCC-eEEEEeC------CCcEEEEeC--CCCceEE--eecCCCCCeEE
Q 005342 525 GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFD------DSSILVHCP--CTKKTKA--KLKGHQNRITC 591 (701)
Q Consensus 525 g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~spdg-~l~~gs~------dg~I~iwd~--~~~~~~~--~l~~h~~~V~~ 591 (701)
..+.+||..+.+-. ..+......-.+++.. ++ +++.|+. ...+..||+ .+.+... .+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 47999999876533 2222111111233333 45 5555543 346788887 4443322 12111111111
Q ss_pred EEEecCCCEEEEEeCC----------------------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCC
Q 005342 592 LAYSLSLNVLVSSGAD----------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 649 (701)
Q Consensus 592 v~~spdg~~l~s~s~D----------------------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg 649 (701)
.+...++++++.|+.+ ..+.+||+.+.+-. .+..++... ....++ ..++
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~--~~~~ 317 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KSGELSQGR----AYGVSL--PWNN 317 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EEEECSSCC----BSSEEE--EETT
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eCCCCCCCc----ccceeE--EeCC
Confidence 1223466777777632 25789999875422 222233222 222222 2366
Q ss_pred CEEEEE-ec--C----eEEEEECCCCceeeee
Q 005342 650 IHLLSI-HE--G----QIDVYEAPTLNHTSQV 674 (701)
Q Consensus 650 ~~l~sg-~D--g----~I~iwd~~~g~~~~~l 674 (701)
++++.| .+ + .+.++++++++.+...
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 776664 32 2 3666788888765543
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.74 E-value=9.1 Score=46.04 Aligned_cols=195 Identities=9% Similarity=0.107 Sum_probs=102.1
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccc
Q 005342 398 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 477 (701)
Q Consensus 398 l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 477 (701)
.-.+|..+.+|.-. ..++.|+|++. ..+.....+ ...|.-=.|-.+.. |+. =.+..|.-|++.+...+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~---k~klks~~~-----~e~VvfWkWis~~~-l~l-VT~~aVyHW~~~~~s~P- 138 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEM---KSKMKAHTM-----TDDVTFWKWISLNT-VAL-VTDNAVYHWSMEGESQP- 138 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHH---hhhhccccc-----CCCceEEEecCCCe-eEE-EcCCeEEEeccCCCCcc-
Confidence 44678877777765 58899999973 112222222 34566556654433 222 22456899988542211
Q ss_pred cccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec--CCEEEEE-------e-CCeEEEEeCCCCcEEEEecCCCCC
Q 005342 478 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-------S-GGKISIFSLETFQTLATFANPPPI 547 (701)
Q Consensus 478 g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s--~~~l~s~-------s-dg~I~iwd~~~~~~~~~~~~~~~~ 547 (701)
.+++|.... + ....|-....+ .++++.. . .|.+.+|..+.+ ..+.+.||...
T Consensus 139 --------~k~fdR~~~------L---~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~ 200 (1630)
T 1xi4_A 139 --------VKMFDRHSS------L---AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS 200 (1630)
T ss_pred --------HHHHhcchh------c---ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhh
Confidence 111111000 0 01223333333 4443322 2 378899998544 44556666544
Q ss_pred eEEEEEcC--CC--eEEEEeC---CCcEEEEeCCCC---ce------EEeecC---CCCCeEEEEEecCCCEEEEEeCCC
Q 005342 548 ATYFILLP--QD--LFAFGFD---DSSILVHCPCTK---KT------KAKLKG---HQNRITCLAYSLSLNVLVSSGADA 608 (701)
Q Consensus 548 i~~l~~sp--dg--~l~~gs~---dg~I~iwd~~~~---~~------~~~l~~---h~~~V~~v~~spdg~~l~s~s~D~ 608 (701)
...+.... .. .++.+.. .++++|.++... .. +..+.. -.....++..|+.-..+...+.-|
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G 280 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 280 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCc
Confidence 43333321 11 2332222 268899887542 11 111111 123345667777666777788899
Q ss_pred eEEEEECCCCeeee
Q 005342 609 QLCVWDAVGWKKLC 622 (701)
Q Consensus 609 ~I~vwd~~~g~~~~ 622 (701)
.|+++|+.+|..+.
T Consensus 281 ~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 281 YIHLYDLETGTCIY 294 (1630)
T ss_pred eEEEEecccchhhh
Confidence 99999999986544
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.46 E-value=11 Score=42.23 Aligned_cols=190 Identities=9% Similarity=0.054 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCC----CcEEEEeccccCCCCceeEeecC-----CCCCCCCEEEEEEec-CCCEEEEEECCC------cE
Q 005342 402 PDADSAVCAKSL----EKSVNLKLQLINEPSECRTLLLP-----DNSFGGRVVRLIYSH-SGDFLVALTQTA------TH 465 (701)
Q Consensus 402 pdg~~l~s~s~d----~~v~iw~~~~~~~~~~~~~l~~~-----~~~~~~~v~~l~~sp-dg~~l~s~s~dg------~i 465 (701)
.++..++.|+.+ ..+.++|.. ++....+..+ ....... .+++..+ +++.++.||.++ .+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~----~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIH----YDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEEC----SSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECC----CCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccE
Confidence 566777777753 457788876 4444443311 1111111 2223333 666666766532 23
Q ss_pred EEEecCCCCccccccccceeeEEeeCCCCeEEee-cccCCCCCCeEEEEec-CCEEEEEe-C--CeEEEEeCCCCcEEEE
Q 005342 466 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLAT 540 (701)
Q Consensus 466 ~vwd~~~~~~~~g~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~l~~s-~~~l~s~s-d--g~I~iwd~~~~~~~~~ 540 (701)
.+| |+.++.-... .+ ......-.++.+. +..++.|+ + +.+.+||..+..-...
T Consensus 471 ~~y---------------------d~~t~~W~~~~~~-p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 471 WIF---------------------DMKTREWSMIKSL-SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp EEE---------------------ETTTTEEEECCCC-SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred EEE---------------------eCCCCcEEECCCC-CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 344 5555442210 01 1112223334444 77777776 4 3799999987653221
Q ss_pred -----ecCCCCCeEEEEEcCC-C-eEEEEeC--C-----CcEEEEeCCCCce-----EEeecC----CCCCeEEEEEecC
Q 005342 541 -----FANPPPIATYFILLPQ-D-LFAFGFD--D-----SSILVHCPCTKKT-----KAKLKG----HQNRITCLAYSLS 597 (701)
Q Consensus 541 -----~~~~~~~i~~l~~spd-g-~l~~gs~--d-----g~I~iwd~~~~~~-----~~~l~~----h~~~V~~v~~spd 597 (701)
.........++.+..+ + .++.|+. + ..+.+||+.+... -..+.. ..... +++...+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC
Confidence 1111222344666665 6 6666665 2 3689999988761 111111 11112 2233334
Q ss_pred CCEEEEEeC--------CCeEEEEECCCCe
Q 005342 598 LNVLVSSGA--------DAQLCVWDAVGWK 619 (701)
Q Consensus 598 g~~l~s~s~--------D~~I~vwd~~~g~ 619 (701)
+++++.|+. ...|.+||..++.
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 777777764 3569999999864
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.83 E-value=4.5 Score=41.24 Aligned_cols=141 Identities=10% Similarity=0.064 Sum_probs=75.2
Q ss_pred CeEEEEec--CCEEEEEe-CCeEEEEeCCCCcEEEEec-------CCCCCeEEEEEcCC----C-eEEEEeC-------C
Q 005342 508 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----D-LFAFGFD-------D 565 (701)
Q Consensus 508 ~v~~l~~s--~~~l~s~s-dg~I~iwd~~~~~~~~~~~-------~~~~~i~~l~~spd----g-~l~~gs~-------d 565 (701)
....+++. |+.++++. .|.|++++.. +.....+. ........++++|+ + +.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46788888 66255555 8999999853 33221111 12345689999996 4 3333222 2
Q ss_pred CcEEEEeCCCC--c--eE----Eeec---CCCCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCCeee
Q 005342 566 SSILVHCPCTK--K--TK----AKLK---GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL 621 (701)
Q Consensus 566 g~I~iwd~~~~--~--~~----~~l~---~h~~~V~~v~~spdg~~l~s~s~-------------D~~I~vwd~~~g~~~ 621 (701)
..|..|+.... . .. ..+. ........++|.|||.+.++.++ .|+|.-.+.... .-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35766766432 1 11 1121 10112367999999976665543 246777776532 00
Q ss_pred eee--------eeeeccCCCCCCCCCeEEEEEcC-CCCEEEE
Q 005342 622 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS 654 (701)
Q Consensus 622 ~~~--------~l~~~~~~~~~~~~~v~~v~~sp-dg~~l~s 654 (701)
... ....+..++ .....++|+| +|++.++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEE
Confidence 000 001011233 4468999999 6666665
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.56 Score=47.57 Aligned_cols=113 Identities=6% Similarity=-0.040 Sum_probs=69.7
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEeecCC-CCCeEEEEEe--c-CCCEEEEE-eCCCeEEEEECCCCeeeeeeeeeeccCC
Q 005342 558 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYS--L-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 632 (701)
Q Consensus 558 ~l~~gs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~v~~s--p-dg~~l~s~-s~D~~I~vwd~~~g~~~~~~~l~~~~~~ 632 (701)
.+++++.||.|+-+|..+|+..-++... ..++....-. + ++..++.. +.||.++.++..+|.......+..+. .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-S 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-T
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-e
Confidence 7899999999999999999988877643 1222221100 1 22333333 68999999999998543322222111 1
Q ss_pred CCCCCCCeEE---EEE------cCCCCEEEE-EecCeEEEEECCCCceeeeeee
Q 005342 633 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQVLL 676 (701)
Q Consensus 633 ~~~~~~~v~~---v~~------spdg~~l~s-g~Dg~I~iwd~~~g~~~~~l~~ 676 (701)
. .++.. ... +.+| .+++ +.+|.+.-.|+.+|+.+.++..
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp T----CSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred c----cccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0 22221 001 1333 4555 5899999999999999888765
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.10 E-value=26 Score=34.09 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeccccCCCCceeEeecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCC
Q 005342 395 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 474 (701)
Q Consensus 395 V~~l~~spdg~~l~s~s~d~~v~iw~~~~~~~~~~~~~l~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 474 (701)
|..++-..+.. ++. . ||.|..|-.+.. +++-. |.. -...|..++...+ ..++.. ||.+..|-...
T Consensus 65 i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~---Gqlg~---P~~-~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~-- 129 (282)
T 3qhy_B 65 VDAIAAGNYHS-LAL-K-DGEVIAWGGNED---GQTTV---PAE-ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDS-- 129 (282)
T ss_dssp CCEEEECSSEE-EEE-E-TTEEEEEECCTT---STTCC---CGG-GSSSEEEEEEETT--EEEEEE-TTEEEEEECCT--
T ss_pred EEEEEeCCCEE-EEE-E-CCEEEEeeCCCC---CCCCC---Ccc-cCCCeEEEECcCC--EEEEEe-CCeEEEecCCC--
Confidence 44555544432 333 3 788988887642 22211 111 1346777776644 344555 99999995422
Q ss_pred ccccccccceeeEEeeCCCCeEEeecccCCCCCCeEEEEec-CCEEEEEeCCeEEEEeCCCCcEEEEecCCCCCeEEEEE
Q 005342 475 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 553 (701)
Q Consensus 475 ~~~g~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~s-~~~l~s~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~ 553 (701)
.+++- +.......|..++.. ...++.. ||.++.|-......+..-......|..++.
T Consensus 130 ------------------~gqlg---~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~ 187 (282)
T 3qhy_B 130 ------------------DGQTT---VPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAG 187 (282)
T ss_dssp ------------------TSTTS---CCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred ------------------CCcCC---CCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEe
Confidence 11110 001122356666665 3334433 899999976542221111111346777777
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 005342 554 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 617 (701)
Q Consensus 554 spdg~l~~gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~ 617 (701)
..+..++. .||.|+.|-....-.+..-......|..++-..+...++ . ||.|+.|-...
T Consensus 188 G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 188 GIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSR 246 (282)
T ss_dssp CSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTC
T ss_pred cCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCC
Confidence 66553344 599999997654211111011123577776654433333 3 99999998765
No 349
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.04 E-value=42 Score=33.85 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=36.6
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce----EEeecCCCCCeEEEEEecCCCEEEEEe
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSG 605 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~v~~spdg~~l~s~s 605 (701)
....++|. +| .+......+.|....+..... ...+.+..+.+..|+..|||.+.++.+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 44566666 35 555556666777666654432 233445456899999999998666543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=81.73 E-value=21 Score=39.96 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=80.3
Q ss_pred CCEEEEEe-C----CeEEEEeCCCCcEEEEe-c-----CCCC-CeEEEEEcC-CC-eEEEEeCCC------cEEEEeCCC
Q 005342 516 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPP-IATYFILLP-QD-LFAFGFDDS------SILVHCPCT 575 (701)
Q Consensus 516 ~~~l~s~s-d----g~I~iwd~~~~~~~~~~-~-----~~~~-~i~~l~~sp-dg-~l~~gs~dg------~I~iwd~~~ 575 (701)
+..++.|+ + ..+.+||..+++-...- . .... .-.+++..+ ++ .++.|+.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 55666665 3 46889998877543322 1 1111 113333343 67 666666443 588999988
Q ss_pred CceEEe--ecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCC-CC
Q 005342 576 KKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI 650 (701)
Q Consensus 576 ~~~~~~--l~~h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spd-g~ 650 (701)
.+.... +...... .+++.-.++.+++.|+.++ .+.+||..++.-.........+... ....++.+..+ ++
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ 552 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence 654332 1111111 1223324788888887654 7999999986422211100011111 22234555655 56
Q ss_pred EEEEE-e--c-----CeEEEEECCCCc
Q 005342 651 HLLSI-H--E-----GQIDVYEAPTLN 669 (701)
Q Consensus 651 ~l~sg-~--D-----g~I~iwd~~~g~ 669 (701)
+++.| . + +.+.+||+.+.+
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 66664 3 2 358899998876
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.07 E-value=5.4 Score=42.83 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred eEEEEeCCC----CcEEEEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC------ce-------EEeecCCC
Q 005342 526 KISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK------KT-------KAKLKGHQ 586 (701)
Q Consensus 526 ~I~iwd~~~----~~~~~~~~~~~~~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~------~~-------~~~l~~h~ 586 (701)
.+.+.|.+. +..+..+-........+.++||| .++.|-.+.++.++|.+.. +. +......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 466777655 22222222223344678999999 5556667789999998742 11 2222212
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCC------CeeeeeeeeeeccCCCCCCCCCeEEEEE------cCCCCEEEE
Q 005342 587 NRITCLAYSLSLNVLVSSGADAQLCVWDAVG------WKKLCSKFLHSFQTGLVPETTIVNHIQF------HPDQIHLLS 654 (701)
Q Consensus 587 ~~V~~v~~spdg~~l~s~s~D~~I~vwd~~~------g~~~~~~~l~~~~~~~~~~~~~v~~v~~------spdg~~l~s 654 (701)
-.....+|.++|.-..|---|..|..|++.. |+.. ...+.+++.+. .+-.+.- .|||++|++
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~-~~v~~k~dv~Y-----qpGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKV-NYIKQKLDVHY-----QPGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCC-CCEEEEEECSS-----CEEEEEETTTTSTTCCSCEEEE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccC-Ceeeecccccc-----CCcccccCCCccCCCCccEEEE
Confidence 2456789999995555566899999999875 2221 12333344332 2233333 578999998
Q ss_pred E----ecCe----------EEEEECC
Q 005342 655 I----HEGQ----------IDVYEAP 666 (701)
Q Consensus 655 g----~Dg~----------I~iwd~~ 666 (701)
. .|+- -.+.|+.
T Consensus 452 lnK~skdrfl~vGpl~pen~QlidIs 477 (638)
T 3sbq_A 452 LSKFSKDRFLPVGPLHPENDQLIDIS 477 (638)
T ss_dssp EESCCTTSSCCCSSSCCEEEEEEECS
T ss_pred ecccccccCcCCCCCCCCcceeEecC
Confidence 4 3553 3788884
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.24 E-value=28 Score=40.65 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=32.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
.+.+++..++..++++-+.|+++|+|++.+|..+....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567788888889999999999999999999986655443
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=74.44 E-value=50 Score=34.80 Aligned_cols=106 Identities=8% Similarity=0.077 Sum_probs=60.6
Q ss_pred CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc---eEEeec-----C----CCCCeEEEEEecC----CCEEEEEeC--
Q 005342 547 IATYFILLPQD--LFAFGFDDSSILVHCPCTKK---TKAKLK-----G----HQNRITCLAYSLS----LNVLVSSGA-- 606 (701)
Q Consensus 547 ~i~~l~~spdg--~l~~gs~dg~I~iwd~~~~~---~~~~l~-----~----h~~~V~~v~~spd----g~~l~s~s~-- 606 (701)
..+.|+|.||| .++++...|.|++++..... .+..+. + ..+....|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 45789999998 58888899999999754321 122221 1 1356789999996 443333221
Q ss_pred C----------CeEEEEECCCC--ee---eeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEE
Q 005342 607 D----------AQLCVWDAVGW--KK---LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 654 (701)
Q Consensus 607 D----------~~I~vwd~~~g--~~---~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~s 654 (701)
+ ..|.-|.+..+ .. ...+.+-.+..... ...-..|.|.|||.+.++
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~--~H~g~~l~fgpDG~LYv~ 155 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHR--KHLGGQLLFGPDGFLYII 155 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSS--SSCEEEEEECTTSCEEEE
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCC--cccCCcEeECCCCcEEEE
Confidence 1 24555666532 10 01112211221111 144689999999987776
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.16 E-value=1.4e+02 Score=33.45 Aligned_cols=133 Identities=7% Similarity=0.013 Sum_probs=72.3
Q ss_pred CeEEEEeCCC--CcEEEEecCCCCCeEEEEEcCCC-eEEEE----------eCCCcEEEEeCCCCc-------eEEe-ec
Q 005342 525 GKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFG----------FDDSSILVHCPCTKK-------TKAK-LK 583 (701)
Q Consensus 525 g~I~iwd~~~--~~~~~~~~~~~~~i~~l~~spdg-~l~~g----------s~dg~I~iwd~~~~~-------~~~~-l~ 583 (701)
..+++.|... ++ ...+..... ..+..+.++ +++.. ...+.|...|+.++. ..+. +.
T Consensus 269 ~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 269 YDNYILDTKYKNLK-LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp EEEEEEECSSSSCE-EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred eeEEEEcCCCCCCc-ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 5677777653 33 233322222 223445566 44422 246789999987642 1222 32
Q ss_pred C-CCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeeeeeee-eeeccCCCCCCCCCeEEEEEcCCCCEEEE--E--
Q 005342 584 G-HQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-- 655 (701)
Q Consensus 584 ~-h~~~V~~v~~spdg~~l~s~s~D~--~I~vwd~~~g~~~~~~~-l~~~~~~~~~~~~~v~~v~~spdg~~l~s--g-- 655 (701)
. ....+..+.|..+ .++++...++ .++++|+.+|... ... +. ++.. +.+.....++++..++. +
T Consensus 346 ~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~-~~~~i~-lp~~-----~~~~~~~~~~~~~~~~~~~ss~ 417 (711)
T 4hvt_A 346 PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWT-KPVVLK-LPYQ-----NAIFGMSSYEEEEEALITIENS 417 (711)
T ss_dssp CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEEC-CCEEEC-CCST-----TCEEEEECCTTCSCEEEEEECS
T ss_pred CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceE-EEeccC-CCCC-----eEEEEEeecCcCCEEEEEEecC
Confidence 2 2336778888765 5677777776 4777887666311 122 22 2211 45666677787755443 2
Q ss_pred -ecCeEEEEECCCCc
Q 005342 656 -HEGQIDVYEAPTLN 669 (701)
Q Consensus 656 -~Dg~I~iwd~~~g~ 669 (701)
.-+.+..+|+. ++
T Consensus 418 ~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 418 IVPPTIYLWVKT-HE 431 (711)
T ss_dssp SSCCEEEEECTT-SC
T ss_pred CCCCEEEEEeCC-Cc
Confidence 24678888876 43
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.95 E-value=95 Score=31.60 Aligned_cols=137 Identities=11% Similarity=0.148 Sum_probs=80.2
Q ss_pred CeEEEEeCCCC--cEEEEecCC------CCCeEEEEEc---CC----C-eE-EEEeCCCcEEEEeCCCCceEEeec----
Q 005342 525 GKISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-LF-AFGFDDSSILVHCPCTKKTKAKLK---- 583 (701)
Q Consensus 525 g~I~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---pd----g-~l-~~gs~dg~I~iwd~~~~~~~~~l~---- 583 (701)
-.|.+||+.++ +.++++.-+ .+.+..+++. |+ + ++ ++-+..+.|.++|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46888899888 888777532 3456788888 32 3 43 343456789999999887654432
Q ss_pred ----------CC----CCCeEEEEEecC----CCEEEEEeCCCeEEEEECCC-----Cee-eeeeeeeeccCCCCCCCCC
Q 005342 584 ----------GH----QNRITCLAYSLS----LNVLVSSGADAQLCVWDAVG-----WKK-LCSKFLHSFQTGLVPETTI 639 (701)
Q Consensus 584 ----------~h----~~~V~~v~~spd----g~~l~s~s~D~~I~vwd~~~-----g~~-~~~~~l~~~~~~~~~~~~~ 639 (701)
|. ...|..++.||+ ++.|......+ -++|.+.+ ... ...+.+.. .+.. ..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~--kg~~---s~ 276 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGN--RGKY---ND 276 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEE--CCTT---CC
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeee--cCCC---CC
Confidence 10 136888899987 67777665543 23443332 110 00111110 0100 22
Q ss_pred eEEEEEc-CCCCEEEEE-ecCeEEEEECCC
Q 005342 640 VNHIQFH-PDQIHLLSI-HEGQIDVYEAPT 667 (701)
Q Consensus 640 v~~v~~s-pdg~~l~sg-~Dg~I~iwd~~~ 667 (701)
-...+.. .+|.++++- ..+.|..|+..+
T Consensus 277 ~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 277 AIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred cceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 3456675 567666664 788999999865
No 356
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=68.91 E-value=19 Score=29.84 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=54.9
Q ss_pred HHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHh
Q 005342 20 IMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALC 94 (701)
Q Consensus 20 i~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~ 94 (701)
=..+++.--|.+|.+.+++=-.+..+ ...=.-....|+|++|+..+.+.-.++.... ++.+ ..=.=+..
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~----~lg~~~~~ 93 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYI----RKAACLVA 93 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHH----HHHHHHHH
Confidence 33455666678887777664333321 2222334567888888888876523332221 1222 11122345
Q ss_pred cCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 95 RHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 95 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.|++++|+..+++-|+--.. +++-...|..||
T Consensus 94 ~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 68888888888866553322 555555666554
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.03 E-value=99 Score=35.95 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=31.0
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l 582 (701)
.+.+++..++. ++++-+.|+++++|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45677778888 9999999999999999999887764
No 358
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=59.03 E-value=51 Score=25.53 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhh
Q 005342 15 HLITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (701)
Q Consensus 15 e~~rli~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 89 (701)
....+...++..-.|.++...+++=-.... + ...=.-....|+|++|+..+...-....... .+.+.+ -
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~----a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRK----A 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHH----H
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHH----H
Confidence 344455556666677777777765333222 1 2222234567888888888876522221111 122211 1
Q ss_pred hHHHhcCChhHHHHHHHhcccccccCChhHHHHHH
Q 005342 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELA 124 (701)
Q Consensus 90 lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~ 124 (701)
.=+...|+..+|+..+++-+.-... ++.....+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 1233568888888888865543311 344444443
No 359
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=56.88 E-value=51 Score=26.39 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 87 (701)
-.....+...++...-|.++...+++-.....+ ...-.-....|+|++|+..+.+.-...... ..+.+.+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la-- 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA-- 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH--
Confidence 445556666667777788888888776555432 222223466899999998887653222221 11222221
Q ss_pred hhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 88 KYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 88 ~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.=+...|+.++|+..+++-+..... +.+....|..++
T Consensus 92 --~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 128 (133)
T 2lni_A 92 --AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCM 128 (133)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHH
T ss_pred --HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 1234668999999999866543321 344444554443
No 360
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=55.44 E-value=21 Score=38.32 Aligned_cols=94 Identities=9% Similarity=-0.046 Sum_probs=58.7
Q ss_pred cEEEEeCCC----Cc-eEEeecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC------ee-eeee-eeeeccCC
Q 005342 567 SILVHCPCT----KK-TKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGW------KK-LCSK-FLHSFQTG 632 (701)
Q Consensus 567 ~I~iwd~~~----~~-~~~~l~~h~~~V~~v~~spdg~~l~s~s-~D~~I~vwd~~~g------~~-~~~~-~l~~~~~~ 632 (701)
.+.+.|.+. +. ....+. -......+..+|||++++.++ -+.++.|+|++.- +. .... ....+..|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 366777665 22 222222 223346788999999887655 4889999998841 11 0001 11112223
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEE--ecCeEEEEECCC
Q 005342 633 LVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT 667 (701)
Q Consensus 633 ~~~~~~~v~~v~~spdg~~l~sg--~Dg~I~iwd~~~ 667 (701)
......+|.++| ..+++ -|..|.-|++.+
T Consensus 378 -----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 -----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp -----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred -----CcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 556889999999 55565 699999999964
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.84 E-value=32 Score=41.11 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=32.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
.+.+++..++..++++-+.|+++|||++.+|..+....+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667778889999999999999999999976655444
No 362
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=50.61 E-value=50 Score=28.02 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
-....|+|++|+..+.+.-.++.+.. .+.+.+ =.=+...|+.++|+..+++-+.--. .+++.+..|+.++..
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~l----g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQERDP--KAHRFL----GLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH----HHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 35678999999999987633332221 122222 2223467999999999997765432 267777788877654
No 363
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=49.96 E-value=8.7 Score=32.61 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHhcHH-HHHHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhcccccc--cCCcccceehhhhhh---
Q 005342 13 YTHLITLIMKFLEEENFK-ESLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKL--DDSNHSKKMFFELRK--- 86 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~-~s~~~l~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~~~~--~~~~~~~~~~~~l~~--- 86 (701)
..++...|+..|.+.||- .+..-+.++.|+..+ ++.+|++.|+.+.+. ...+++......|.+
T Consensus 21 ~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~~~ 89 (130)
T 2k9m_A 21 EQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEIYP 89 (130)
T ss_dssp HHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcCch
Confidence 356888899999999994 445555555565543 233444455555322 112221211122211
Q ss_pred ------hhhhH-HHhcCCh-hHHHHHHHhccccc
Q 005342 87 ------HKYCE-ALCRHER-TEADSIFRKDLKVF 112 (701)
Q Consensus 87 ------q~~lE-ll~~~~~-~~a~~~L~~~l~~~ 112 (701)
..+|| +|.++++ .+|+.++| .|.|.
T Consensus 90 ~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 90 EEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp TTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred hHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 14677 7777774 44666776 77665
No 364
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=46.86 E-value=58 Score=31.39 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
-.+..|++++|+..+.++...+... ....-..-+++...++..+|+..|++.+.--.. +.+....|+.++..
T Consensus 160 ~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~ 231 (287)
T 3qou_A 160 TLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQ 231 (287)
T ss_dssp HHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHH
Confidence 4455677777777776663222111 111222234455556666666666655443311 44444555555443
No 365
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=44.30 E-value=1.1e+02 Score=23.75 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHH
Q 005342 19 LIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (701)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll 93 (701)
+..-+....-|.++...+++-..... + ...-.-....|++++|+..+........... ...+.+- .-+.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la----~~~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLG----NAYY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHH----HHHH
Confidence 33444555557777666665432222 1 2223345667999999888876522221111 1222211 1233
Q ss_pred hcCChhHHHHHHHhcccccccCChhHHHHHHH
Q 005342 94 CRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (701)
Q Consensus 94 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~ 125 (701)
..|+.++|+..+++-+.-. ..++.....|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 119 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 119 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5688889988888654432 114444444443
No 366
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.65 E-value=71 Score=30.88 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhc-HHHHHHHHHH--hcCCch---hH--HHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhh
Q 005342 15 HLITLIMKFLEEEN-FKESLQALEQ--ESKIFF---NV--HRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRK 86 (701)
Q Consensus 15 e~~rli~q~l~~~g-~~~s~~~l~~--Esg~~~---~~--~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 86 (701)
+.++++.+++...| +.++.+.|++ +.+... ++ ..=.-....|++++|+..+.+ +++.. +.+.+
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~---~~~~l-- 136 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLE---CMAMT-- 136 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHH---HHHHH--
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHH---HHHHH--
Confidence 45666777777666 7777777776 233222 12 111344567888888887776 11111 22211
Q ss_pred hhhhHHHhcCChhHHHHHHHhcc
Q 005342 87 HKYCEALCRHERTEADSIFRKDL 109 (701)
Q Consensus 87 q~~lEll~~~~~~~a~~~L~~~l 109 (701)
-.=++..|+.++|+..|++-+
T Consensus 137 --~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 --VQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHHHHH
Confidence 112445688888888887543
No 367
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=42.60 E-value=93 Score=28.89 Aligned_cols=109 Identities=6% Similarity=0.002 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhh
Q 005342 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 16 ~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 90 (701)
+++.-.-++..-.|.++...+++--....+ ...-.-....|++++|+..+...-..+++.. .....+-..=.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHHHHH
Confidence 444455555666678888777764333321 2333366778999999988876633332221 22222223333
Q ss_pred HHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 91 Ell~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
-+...|+.++|+..+++-+.--.. +...+..++.+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 345668888998888876653322 4555556655543
No 368
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.54 E-value=96 Score=24.78 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhH
Q 005342 17 ITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (701)
Q Consensus 17 ~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lE 91 (701)
..+-..++..--|.++...+++--....+ ...=.-....|+|++|+..+.+.-.++.... .+.+.+ =.=
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l----g~~ 81 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRK----ATA 81 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHH----HHH
Confidence 33444556666677777777654433331 2222334567899998888876533322211 122221 122
Q ss_pred HHhcCChhHHHHHHHhccc
Q 005342 92 ALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 92 ll~~~~~~~a~~~L~~~l~ 110 (701)
+...|++++|+..+++-+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 3456888888888886544
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.60 E-value=61 Score=35.00 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-------------cCeEEEEECCCCceeeeeee-----eeEEEEEeeEEeeeecceEEEEe
Q 005342 638 TIVNHIQFHPDQIHLLSIH-------------EGQIDVYEAPTLNHTSQVLL-----ISHIMFVQIVVKFHSFKFFYVAV 699 (701)
Q Consensus 638 ~~v~~v~~spdg~~l~sg~-------------Dg~I~iwd~~~g~~~~~l~~-----i~~~~fs~~~~~f~~~~~~~~~~ 699 (701)
.....|.|.++|.+.++.+ .+.+..++..+|++...+.+ +++++|||+. +.+||++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~------ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ------KTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS------SEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCC------CEEEEEE
Confidence 5568899999998877421 12577778888887666643 8999999985 5566654
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.32 E-value=97 Score=33.43 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=40.5
Q ss_pred CeEEEEEcCCC-eEE-EEeC-----------CCcEEEEeCCCCceEEeecCC-CCCeEEEEEecCCCEEEEE
Q 005342 547 IATYFILLPQD-LFA-FGFD-----------DSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 547 ~i~~l~~spdg-~l~-~gs~-----------dg~I~iwd~~~~~~~~~l~~h-~~~V~~v~~spdg~~l~s~ 604 (701)
....|+|+++| +.+ +-.. ...++.++..++++...+.+. ...++.++|+||++.|..+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 35789999999 433 3211 226788888788876666543 3468999999999977654
No 371
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.11 E-value=68 Score=31.98 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCH---HHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHH
Q 005342 46 VHRFGEIVMNGEW---EKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCE 122 (701)
Q Consensus 46 ~~~~~~~i~~G~w---~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~ 122 (701)
+.+|++.|.+|++ -||-+.+..+. .| .+.+++|-|.++.= ++-|+.+|+ .-+..---.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~R-y~~~k~y~eAidLL-~~GA~~ll~-------~~Q~~sg~D 76 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------AR-YSKQGNWAAAVDIL-ASVSQTLLR-------SGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HH-HHHTTCHHHHHHHH-HHHHHHHHH-------TTCHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HH-HHhhcCHHHHHHHH-HHHHHHHHH-------CCCcchHHH
Confidence 7899999999999 78776666551 22 34445555444431 333444444 224444456
Q ss_pred HHHHhccccchhhhhccCCCCChhHHHHHHHHHHh
Q 005342 123 LAELLALKDLRENEQLSGYTNATSSRAKLIDSLKL 157 (701)
Q Consensus 123 l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 157 (701)
|+.+|.- . ...........++.+|++.++.
T Consensus 77 L~~llve-v----y~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 77 LAVLLVD-T----FRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHH-H----HHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHH-H----HHHcCCCCCHHHHHHHHHHHHh
Confidence 6655542 1 1122233355677777776664
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.48 E-value=95 Score=33.76 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=39.3
Q ss_pred CeEEEEEecCCCEEEEEeCC------------CeEEEEECCCCeeeeeeeeeeccCCCCCCCCCeEEEEEcCCCCEEEEE
Q 005342 588 RITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 655 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D------------~~I~vwd~~~g~~~~~~~l~~~~~~~~~~~~~v~~v~~spdg~~l~sg 655 (701)
..-.|+|+|+|++++.-..+ +.+.+.+..+|+.. .+- .+.. ...++.++|+||++.|.++
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~---rf~---~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR---RFM---VGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE---EEE---ECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE---EEE---eCCC--CccCcCeeECCCCCEEEEE
Confidence 34678999999966644322 24566677776532 222 2322 2789999999999988764
No 373
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=37.04 E-value=16 Score=31.25 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.7
Q ss_pred ehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHH
Q 005342 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (701)
Q Consensus 80 ~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~ 125 (701)
+.|=|.-+-||||+..|..++|-.++.+--.-+... .+.++.|+.
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~ 77 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFES 77 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhc
Confidence 789999999999999999999999998433333333 444444443
No 374
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=36.77 E-value=30 Score=30.28 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.6
Q ss_pred ehhhhhhhhhhHHHhcCChhHHHHHHHhccccc-ccCChhHHHHHHHHhc
Q 005342 80 MFFELRKHKYCEALCRHERTEADSIFRKDLKVF-SVSQNRIDCELAELLA 128 (701)
Q Consensus 80 ~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~l~~~l~ 128 (701)
+.|=|.=+-||||+..|..++|-.+|+ +..+. .....+.++.|+.+..
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~-~f~~~~~~~~~~~i~~L~~i~~ 100 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFE-KFHGDQECYYQDDLRVLSSLTK 100 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHH-HHGGGSCGGGHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH-HHhHHhHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999998 44443 2234455555554443
No 375
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.49 E-value=1.7e+02 Score=23.63 Aligned_cols=107 Identities=12% Similarity=0.036 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh--------HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN--------VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFEL 84 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~--------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l 84 (701)
-.....+-..++..--|.++...+++--....+ ...=.-....|+|++|+..+...-...... ..+.+.+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHH
Confidence 344455556666777788888888765544432 112223567899999988887652222111 1122221
Q ss_pred hhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHH
Q 005342 85 RKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (701)
Q Consensus 85 ~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~ 126 (701)
- .=+...|+.++|+..+++-+..... +++....+..+
T Consensus 106 a----~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 106 S----QALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp H----HHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred H----HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 1 1233568899999988866553321 44444444443
No 376
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=36.27 E-value=1.9e+02 Score=27.43 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=45.7
Q ss_pred HHHHHHHHHhc--HHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhh
Q 005342 18 TLIMKFLEEEN--FKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 18 rli~q~l~~~g--~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 90 (701)
..+...+...| |.++...+++-.....+ ...-.-....|++++|+..+........... ...+. .-.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~----l~~ 167 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH--LPMLY----IGL 167 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS--HHHHH----HHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH--HHHHH----HHH
Confidence 33444444444 55555555554443331 2222334455666666666655422211111 01111 122
Q ss_pred HHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 91 Ell~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
-+...|+.++|+..+++-+.-... +...+..+..++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 203 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVA 203 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 233456777777777755443311 344444444443
No 377
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=36.16 E-value=39 Score=26.25 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccc-cCChhHHHHHHHHhc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFS-VSQNRIDCELAELLA 128 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~-~~~~~~~~~l~~~l~ 128 (701)
.....|+|++|+..+.+.-.++.... .+.+.+- .=+...|+.++|+..+++-+.-.. ..+.....++..++.
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg----~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDYV--GTYYHLG----KLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH----HHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 34568999999999987633332222 1222221 223456999999999997664321 124444555555543
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.79 E-value=90 Score=37.20 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=29.7
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEee
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 582 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~~~~~~l 582 (701)
.+.+++..++. ++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34556666777 9999999999999999999887764
No 379
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.68 E-value=1.3e+02 Score=28.98 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHhcHHHHHHHHHHhcCCchh--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHH-hcCChh
Q 005342 23 FLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL-CRHERT 99 (701)
Q Consensus 23 ~l~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll-~~~~~~ 99 (701)
++..--|.++...|++ +-..+ ...-.-....|++++|+..+..+...+... ....+. .-++.+. ..|+++
T Consensus 111 ~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHHHHHHCTTHHH
T ss_pred HHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHHHHHhCchHHH
Confidence 4455568888888888 44444 334445668899999999998873333221 111111 1223333 458899
Q ss_pred HHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 100 EADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 100 ~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
+|+.++++-+.-. ..++.-+..+..++..
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 9999999666543 2255555556655443
No 380
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=33.41 E-value=1.7e+02 Score=22.74 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHh
Q 005342 20 IMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALC 94 (701)
Q Consensus 20 i~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~ 94 (701)
...++....|.++...+++=..... . ...-.-....|+|++|+..+...-....... .+.+.+- .=+..
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~----~~~~~ 92 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMG----LALSS 92 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHH----HHHHH
Confidence 3334444557777766665322222 1 2223345678999999888876522221111 1222211 12335
Q ss_pred cCChhHHHHHHHhcccccccCChhHHHHHHHH
Q 005342 95 RHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (701)
Q Consensus 95 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~ 126 (701)
.|+.++|+..+++-+.-... ++.....+..+
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 123 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPD-NETYKSNLKIA 123 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCcc-chHHHHHHHHH
Confidence 68888998888865543311 34444444443
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.21 E-value=1.1e+02 Score=33.35 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=40.4
Q ss_pred eEEEEEcCCC-eEEEEeCC------------CcEEEEeCCCCceEEeecCCC-CCeEEEEEecCCCEEEEE
Q 005342 548 ATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSS 604 (701)
Q Consensus 548 i~~l~~spdg-~l~~gs~d------------g~I~iwd~~~~~~~~~l~~h~-~~V~~v~~spdg~~l~s~ 604 (701)
.-.|+|+|.| ++++-..+ ..+.+.+..+++..+-+.++. ..++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3678999999 44443221 246677777888877777654 479999999999877654
No 382
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=33.19 E-value=1.7e+02 Score=22.74 Aligned_cols=101 Identities=12% Similarity=0.166 Sum_probs=52.9
Q ss_pred HHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHh
Q 005342 20 IMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALC 94 (701)
Q Consensus 20 i~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~ 94 (701)
..-++..--|.++...+++=-.... . ...-.-....|++++|+..+........... ...+.+ -.=+..
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l----~~~~~~ 81 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNL----GNAYYK 81 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHH----HHHHHH
Confidence 3334445556666666654322221 1 2223345567999999999877632221111 122221 112346
Q ss_pred cCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 95 RHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 95 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.|+.++|+..+++-+..... +...+..++.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 113 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 113 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 78999999999866553321 344444454444
No 383
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=32.91 E-value=59 Score=26.37 Aligned_cols=72 Identities=8% Similarity=-0.039 Sum_probs=37.8
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
...+..|+|++|+..+...-..+.... .+.+.+-. =+...|+.++|+..+++-+.--.. +.+-+..|..++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~----~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGL----TQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHH----HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 445667888888888776522222211 12222211 123568888888888865443211 4444445554443
No 384
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.88 E-value=56 Score=26.85 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 48 RFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 48 ~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.=......|+|++|+..+...-....... ....++...-.=+...+++++|+..+++-+.-... +...+..++.++
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 109 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQAL 109 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHH
Confidence 33456789999999999987632222210 11222222223345679999999999976654322 455555666555
Q ss_pred cc
Q 005342 128 AL 129 (701)
Q Consensus 128 ~~ 129 (701)
..
T Consensus 110 ~~ 111 (148)
T 2dba_A 110 EK 111 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 385
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.64 E-value=1.2e+02 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccc
Q 005342 46 VHRFGEIVMNGEWEKAEKYLSAF 68 (701)
Q Consensus 46 ~~~~~~~i~~G~w~~~~~~l~~~ 68 (701)
+.+|++.|.+|++-||-+.+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 78899999999999998777666
No 386
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.57 E-value=63 Score=25.97 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
.....|+|++|+..+.+.-.++.... .++-..=.-+...|++++|+..+++-+.--.. +...+..++.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 45678999999999976522222211 22222233345679999999999977654322 55556666665544
No 387
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=31.29 E-value=76 Score=23.25 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHH
Q 005342 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAEL 126 (701)
Q Consensus 52 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~ 126 (701)
....|+|++|+..+.+.-...... ..+.+.+ =.=+...|+.++|+..+++-+.-- ..+++....|..+
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l----~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNN--AEAWYNL----GNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCC--HHHHHHH----HHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456799999998887652222111 1122222 122345789999999998665432 1144444455443
No 388
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=31.27 E-value=1.2e+02 Score=25.52 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccc-cCCcccceehhhhhhhhh
Q 005342 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKL-DDSNHSKKMFFELRKHKY 89 (701)
Q Consensus 16 ~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~-~~~~~~~~~~~~l~~q~~ 89 (701)
...+-..++..--|.++...+++=.....+ ...=.-....|+|++|+..+...-.+ |++.. +.|.+ =
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~l----g 96 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR---FPFHA----A 96 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHH----H
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHH----H
Confidence 344455556666688887777654333331 11122446789999998888765323 32221 22222 1
Q ss_pred hHHHhcCChhHHHHHHHhccc
Q 005342 90 CEALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 90 lEll~~~~~~~a~~~L~~~l~ 110 (701)
.=++..|+.++|+..+++-+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 123467889999988886554
No 389
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=31.25 E-value=65 Score=26.79 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
.....|+|++|+..+...-..+.... .+.+.+ =.=+...|++++|+..+++-+.--.. ++..+..+..++..
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l----g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGL----GACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCccH--HHHHHH----HHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 45667888888888876632222211 122211 11233568888888888866543322 55555555555443
No 390
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=31.01 E-value=1.2e+02 Score=25.73 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhh
Q 005342 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 16 ~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 90 (701)
+..+-..++..--|.++...+++=-.+.-+ ...=.-....|+|++|+..+.+.-.++.... .+.+.+ =.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l----g~ 87 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWSRL----GL 87 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHH----HH
Confidence 334444556666688888877765444332 2222345678999999999876633332221 122222 22
Q ss_pred HHHhcCChhHHHHHHHhccccc
Q 005342 91 EALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 91 Ell~~~~~~~a~~~L~~~l~~~ 112 (701)
=+...|++++|+..+++-+.--
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 2345699999999999766543
No 391
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=30.82 E-value=1.8e+02 Score=26.01 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh---HH------------------HHHHHHhcCCHHHHHHHhccccccc
Q 005342 14 THLITLIMKFLEEENFKESLQALEQESKIFFN---VH------------------RFGEIVMNGEWEKAEKYLSAFTKLD 72 (701)
Q Consensus 14 ~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~---~~------------------~~~~~i~~G~w~~~~~~l~~~~~~~ 72 (701)
.+++..-..++..-.|.++...+++=.....+ +- .=.-....|++++|+..+.+.-.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34555566667777788888877765544442 11 1223567899999998887662222
Q ss_pred CCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 73 DSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 73 ~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
.... .+.+.+- .=+...|+.++|+..+++-+.--.. +++-+..|..++.
T Consensus 85 p~~~--~~~~~lg----~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNV--DCLEACA----EMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp TTCH--HHHHHHH----HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 2221 1222221 1234568999999999976553322 5666666666553
No 392
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=30.77 E-value=61 Score=25.86 Aligned_cols=72 Identities=14% Similarity=0.007 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
......|+|++|+..+.+.-...... . .++...=.-+...++.++|+..+++-+.-.. .+...+..++.++.
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~--~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKD--A----KLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTC--H----HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc--H----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34567999999999998763222221 1 1222222234567999999999997765432 24555556665543
No 393
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=30.16 E-value=65 Score=26.39 Aligned_cols=72 Identities=17% Similarity=-0.002 Sum_probs=45.0
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
.....|+|++|+..+.+.-.++.... .++-..=.=+...|+..+|+..+++-|.--.. +.+-+..+..++..
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENA------ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 45678999999999976522222221 22222333345679999999999977654322 56666666666544
No 394
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=30.15 E-value=68 Score=24.75 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
......|+|++|+..+...-....... .+.+.+- .-+...|+.++|+..+++-+.-.. .+.+.+..++.++.
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a----~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRS----AAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHH----HHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 345678999999999987632222211 1222221 123456999999999997665432 24555555555543
No 395
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=30.04 E-value=64 Score=27.71 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-H----HHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN-V----HRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKH 87 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-~----~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q 87 (701)
-++|-.-|.++|..-+. +++=..+..+ . ..=......|++++|+..+...-.++.... .+.+.+
T Consensus 8 ~~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~l--- 76 (151)
T 3gyz_A 8 NESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGL--- 76 (151)
T ss_dssp -CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH---
T ss_pred HHHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH---
Confidence 34555666677765443 2222222222 1 112345678999999999987743332221 122221
Q ss_pred hhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 88 KYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 88 ~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
=.=+...|++++|+..+++-++--.. +++.+..|..++..
T Consensus 77 -g~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 77 -AAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred -HHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 12234679999999999977654422 66777777776654
No 396
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.45 E-value=77 Score=25.29 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHhccccc-ccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhccc
Q 005342 51 EIVMNGEWEKAEKYLSAFTK-LDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~-~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~ 110 (701)
.....|+|++|+..+..+-. -|++.....+.|.+- .-+...|++.+|+..+++-+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg----~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLG----ESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHH----HHHHHhccHHHHHHHHHHHHH
Confidence 34567888888877776522 222221111222222 123456888888888876554
No 397
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=29.27 E-value=1.4e+02 Score=27.14 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHhccc
Q 005342 52 IVMNGEWEKAEKYLSAF 68 (701)
Q Consensus 52 ~i~~G~w~~~~~~l~~~ 68 (701)
....|+|++|+..+...
T Consensus 149 ~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 34556666666666544
No 398
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=29.25 E-value=86 Score=23.84 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=27.3
Q ss_pred HHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccc
Q 005342 52 IVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKV 111 (701)
Q Consensus 52 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~ 111 (701)
....|+|++|+..+.+.-....... .+.+. .=.=+...|+.++|+..+++-+..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~----~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEES--KYWLM----KGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCH--HHHHH----HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCH--HHHHH----HHHHHHHccCHHHHHHHHHHHHHh
Confidence 4456777777777765522221111 01111 111123557777777777765543
No 399
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=28.48 E-value=2.3e+02 Score=23.72 Aligned_cols=101 Identities=13% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHh
Q 005342 20 IMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALC 94 (701)
Q Consensus 20 i~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~ 94 (701)
...++..-.|.++...+++--....+ ...-.-....|++++|+..+.+......... .+.+ ..-.-+..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~~a~~~~~ 88 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVAT----VLGLTYVQ 88 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHH----HHHHHHHH
Confidence 33444555577777777664433321 2333345678999999999887632221111 0111 11222345
Q ss_pred cCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 95 RHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 95 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.|+.++|+..+++-+.-... +...+..++.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 120 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVAL 120 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHH
Confidence 68999999999866544321 444444444443
No 400
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.32 E-value=1.4e+02 Score=24.47 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhh
Q 005342 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (701)
Q Consensus 14 ~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 88 (701)
..+..+-..++..--|.++...+++=.....+ ...=.-....|++++|+..+...-.++.... .+.|.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l---- 92 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--RFPFHA---- 92 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHH----
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHH----
Confidence 33445556666777788888888764443332 1222345678999999999987633332222 122222
Q ss_pred hhHHHhcCChhHHHHHHHhccc
Q 005342 89 YCEALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 89 ~lEll~~~~~~~a~~~L~~~l~ 110 (701)
=.=+...|+.++|+..+++-+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 1123467999999999996554
No 401
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=27.99 E-value=83 Score=23.77 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccce-ehhhhhhhhhhHHHhcCChhHHHHHHHhccccc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKK-MFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~-~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~ 112 (701)
......|+|++|+..+.+.-....... . +.+.+- . =+...|+.++|+..+++-+.--
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg-~---~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGK--DEAYYLMG-N---AYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTH--HHHHHHHH-H---HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHH-H---HHHHcCCHHHHHHHHHHHHhcC
Confidence 455678999999999887632222221 1 112111 1 1235689999999999766543
No 402
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=27.95 E-value=1e+02 Score=23.31 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=48.1
Q ss_pred HHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhc-
Q 005342 22 KFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCR- 95 (701)
Q Consensus 22 q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~- 95 (701)
-++....|.+|...+++=..... + ...=.-....|+|++|+..+.+.-......... .++...-.=+...
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----DVWAAKADALRYIE 90 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----HHHHHHHHHHTTCS
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----HHHHHHHHHHHHHh
Confidence 34444557777766655322221 1 222233567899999999997763232220011 1222222224467
Q ss_pred CChhHHHHHHHhccccc
Q 005342 96 HERTEADSIFRKDLKVF 112 (701)
Q Consensus 96 ~~~~~a~~~L~~~l~~~ 112 (701)
|+.++|+..+++-+...
T Consensus 91 ~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEH 107 (112)
T ss_dssp SCSHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 89999999999665443
No 403
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=27.87 E-value=73 Score=27.17 Aligned_cols=73 Identities=10% Similarity=-0.057 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
......|+|++|+..+.+.-.+..... .++-..=.=++..|++.+|+..+++-+.--.. +...+..|..++..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPANP------IYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345688999999999987633322211 12222222345679999999999977654422 55666666666544
No 404
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=27.62 E-value=85 Score=25.34 Aligned_cols=90 Identities=17% Similarity=-0.021 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhh
Q 005342 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (701)
Q Consensus 15 e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 89 (701)
+...+-..+++.--|.++...+++=.....+ ...=.-....|++++|+..+.+.-.++.... .+.+.+ =
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~l----a 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAAL----A 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----H
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH----H
Confidence 4556666777777888888888776555442 2222235568999999999977633332221 122222 1
Q ss_pred hHHHhcCChhHHHHHHHhccc
Q 005342 90 CEALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 90 lEll~~~~~~~a~~~L~~~l~ 110 (701)
.=+...|+.++|+..+++-+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223456889999999996554
No 405
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=27.35 E-value=47 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 005342 15 HLITLIMKFLEEENFKESLQALEQESKIF 43 (701)
Q Consensus 15 e~~rli~q~l~~~g~~~s~~~l~~Esg~~ 43 (701)
-+.-||-.||+=.||+-|+..++-|||..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35668899999999999999999999996
No 406
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.33 E-value=83 Score=26.58 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
.....|++++|+..+...-..+.... .+.+.+ =.=+...|++++|+..+++-+.--.. ++..+..|..++..
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l----g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGL----GACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccH--HHHHHH----HHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 45678999999999987633332221 122221 11234679999999999976653322 56666667666544
No 407
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.19 E-value=1.6e+02 Score=25.07 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-HH----HHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhh
Q 005342 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-VH----RFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (701)
Q Consensus 14 ~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-~~----~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 88 (701)
.....+-..++..--|.+|...+++=-.+..+ .. .=.-....|++++|+..+.+.-.++.... .+.|.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~--~~~~~l---- 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY--TPVFHT---- 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--HHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--HHHHHH----
Confidence 33445555666667788888888776555542 11 11345678999999999976633332222 133322
Q ss_pred hhHHHhcCChhHHHHHHHhccccc
Q 005342 89 YCEALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 89 ~lEll~~~~~~~a~~~L~~~l~~~ 112 (701)
=.=+...|+.++|+..+++-+.-.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 223456799999999999766543
No 408
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=26.47 E-value=6.3 Score=32.05 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhccc
Q 005342 32 SLQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (701)
Q Consensus 32 s~~~l~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (701)
.+..+-+|||+.+++..+-.-| +|+||++.+.+.+.
T Consensus 37 ~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3444445799999866666655 49999999998766
No 409
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=26.40 E-value=1.3e+02 Score=24.48 Aligned_cols=101 Identities=7% Similarity=0.085 Sum_probs=52.5
Q ss_pred HHHHhcHHHHHHHHHHhcCCchh-HH----HHHHHHhcCCHHHHHHHhccc-ccccCCcccceehhhhhhhhhhHHHhcC
Q 005342 23 FLEEENFKESLQALEQESKIFFN-VH----RFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKMFFELRKHKYCEALCRH 96 (701)
Q Consensus 23 ~l~~~g~~~s~~~l~~Esg~~~~-~~----~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~l~~q~~lEll~~~ 96 (701)
+.+.--|.+|...+++=-.+..+ .. .=.-....|+|++|+..+.+. ..-++........-.++-..=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44455577777777654333322 11 112356789999999888654 2222221100000011111111234568
Q ss_pred ChhHHHHHHHhcccccccCChhHHHHHHH
Q 005342 97 ERTEADSIFRKDLKVFSVSQNRIDCELAE 125 (701)
Q Consensus 97 ~~~~a~~~L~~~l~~~~~~~~~~~~~l~~ 125 (701)
++++|+..+++-|... .+++....|..
T Consensus 98 ~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp CHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 8999999998777633 25666655543
No 410
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=26.22 E-value=2e+02 Score=22.95 Aligned_cols=91 Identities=14% Similarity=-0.013 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhh
Q 005342 14 THLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (701)
Q Consensus 14 ~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 88 (701)
.....+-..++..-.|.++...+++=-....+ ...=.-....|+|++|+..+...-.++.... .+.+.+-
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~--- 84 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLG--- 84 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH---
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHHHH---
Confidence 33444555566666788888777654333322 2222334568999999998876633332211 1222221
Q ss_pred hhHHHhcCChhHHHHHHHhccc
Q 005342 89 YCEALCRHERTEADSIFRKDLK 110 (701)
Q Consensus 89 ~lEll~~~~~~~a~~~L~~~l~ 110 (701)
.=+...|++++|+..+++-+.
T Consensus 85 -~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 -QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhhHHHHHHHHHHHHH
Confidence 223356889999998886543
No 411
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=26.03 E-value=1.9e+02 Score=25.94 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhH
Q 005342 17 ITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (701)
Q Consensus 17 ~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lE 91 (701)
..+-..++..-.|.++...+++--....+ ...=.-....|++++|+..+.+.-.++.... .+.+.+- ..|++
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg-~~~~~ 85 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLS-EAYVA 85 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH-HHHHH
Confidence 34444556666788888888877666553 2222345678999999999987632322221 1222221 11221
Q ss_pred H--------HhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 92 A--------LCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 92 l--------l~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
+ +..|+.++|+..+++-++--.. +++.+..|..++..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 1 1228899999999976653322 55556666665543
No 412
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=25.86 E-value=2.2e+02 Score=22.02 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHHHHH-hcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHH
Q 005342 20 IMKFLEE-ENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (701)
Q Consensus 20 i~q~l~~-~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll 93 (701)
+.+.+.. ..|.++...+++-.....+ ...-.-....|+|++|+..+........... .+.+.+- .=+.
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la----~~~~ 114 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLG----NAYY 114 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHH----HHHH
Confidence 3444333 4477777776654332221 2233446778999999999977632222111 1222211 1134
Q ss_pred hcCChhHHHHHHHhcc
Q 005342 94 CRHERTEADSIFRKDL 109 (701)
Q Consensus 94 ~~~~~~~a~~~L~~~l 109 (701)
..|+.++|+..+++-+
T Consensus 115 ~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHH
Confidence 6799999999988544
No 413
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.79 E-value=4.6e+02 Score=25.37 Aligned_cols=200 Identities=9% Similarity=0.039 Sum_probs=103.2
Q ss_pred CCCCeEEEEcCCCcEEEEeccccCCCCce-eEe-ecCCCCCCCCEEEEEEecCCCEEEEEECCCcEEEEecCCCCccccc
Q 005342 402 PDADSAVCAKSLEKSVNLKLQLINEPSEC-RTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 479 (701)
Q Consensus 402 pdg~~l~s~s~d~~v~iw~~~~~~~~~~~-~~l-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~g~ 479 (701)
|+...+++.+.+|.|+--.+.+......- .-+ .+... ..+.+..+........++..+..|.+.-.....- +.+.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el--p~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL--PEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS--CCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC--cCCC
Confidence 45567888899999987766532211100 000 00111 2345556656666677888888888766654211 1110
Q ss_pred cccceeeEEeeCCCCeEEeecccCCCCCCeEEEEe----c-CCEEEEEe-CCeEEEEeCCCCc-------EEEEecCCCC
Q 005342 480 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPP 546 (701)
Q Consensus 480 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~l~~----s-~~~l~s~s-dg~I~iwd~~~~~-------~~~~~~~~~~ 546 (701)
. ...|..+.+.+.-.....|.++.. . +.+++..+ .|.++...+.... ..-.+... .
T Consensus 78 ~----------~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d 146 (307)
T 1zi0_A 78 R----------GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-D 146 (307)
T ss_dssp S----------SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-C
T ss_pred C----------CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-C
Confidence 0 012222111111122334544432 3 55677777 8999888764221 11222322 4
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 005342 547 IATYFILLPQD-LFAFGFDDSSILVHCPCTK---------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 616 (701)
Q Consensus 547 ~i~~l~~spdg-~l~~gs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~v~~spdg~~l~s~s~D~~I~vwd~~ 616 (701)
.+..+....+. .++..+.+|.+..++...- ...-.+. ....|.++..-+++..++..+..|.++-.++.
T Consensus 147 ~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 147 ELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 55454444444 7778888998888775431 1111222 22356666544556678888999998888774
No 414
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=25.45 E-value=1.9e+02 Score=24.72 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhh
Q 005342 15 HLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKY 89 (701)
Q Consensus 15 e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 89 (701)
..+.+-..++..-.|.++...+++=.....+ ...=.-.+..|++++|+..+......+.. ....... -.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~---~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD---NSYKSLI---AK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC---HHHHHHH---HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC---hHHHHHH---HH
Confidence 4566667777888888888887664333332 22223456789999999999877333221 1111111 12
Q ss_pred hHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 90 CEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 90 lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
+.+...++..+|+..+++-+.--.. +++.+..|+.++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2333334445577777766543322 55556666665544
No 415
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.20 E-value=2e+02 Score=22.34 Aligned_cols=109 Identities=7% Similarity=0.069 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccc-cCCcccceehhhhhhhhhh
Q 005342 17 ITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKL-DDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 17 ~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~-~~~~~~~~~~~~l~~q~~l 90 (701)
..+-..++..--|.++...+++--....+ ...-.-....|+|++|+..+...-.. +...........++-..=.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33444555566677777777654333221 22223445689999999988765222 2111100000122222222
Q ss_pred HHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 91 Ell~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
-+...|+.++|+..+++-+.-. . +++....+..+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEH-R-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-C-CHHHHHHHHHHH
Confidence 2346799999999998666533 2 455455555443
No 416
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=24.81 E-value=1e+02 Score=23.83 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
......|+|++|+..+........... .+.+.+ -.-+...|+.++|+..+++-+.-. ..++..+..++.++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l----a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNL----GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHH----HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345678999999999977632221111 122222 222346799999999998665433 11444444555443
No 417
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.69 E-value=1e+02 Score=34.21 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=29.7
Q ss_pred CCeEEEEecCCEEEEEe-CCeEEEEeCCCCcEEEEecC
Q 005342 507 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 543 (701)
Q Consensus 507 ~~v~~l~~s~~~l~s~s-dg~I~iwd~~~~~~~~~~~~ 543 (701)
..|.++.+...++++-+ |.++|+||+++++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666666677888888 99999999999998887654
No 418
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=24.15 E-value=1.1e+02 Score=24.02 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
......|+|++|+..+.+.-....... .++...=.-+...|+..+|+..+++-+.-. ..+...+..++.++.
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANA------VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 345678999999999987632222111 122222222346799999999999766543 224555555555443
No 419
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=23.91 E-value=38 Score=23.04 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=13.1
Q ss_pred cchHHHHHHHHhCCC
Q 005342 175 NNSALSSLIKLICPS 189 (701)
Q Consensus 175 p~~RL~~Ll~q~~~~ 189 (701)
..+||..|++|.|+.
T Consensus 37 en~rlr~l~kqmcps 51 (63)
T 2c9l_Y 37 ENDRLRLLLKQMCPS 51 (63)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHhCCc
Confidence 478999999999974
No 420
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=23.88 E-value=1.4e+02 Score=22.77 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhccccc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~ 112 (701)
.....|+|++|+..+.+.-....... .+.+ ..=.=++..|++++|+..+++-+.-.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNP--VGYS----NKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH--HHHH----HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34568999999988876522222211 1222 22223456799999999999776544
No 421
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.40 E-value=54 Score=29.62 Aligned_cols=62 Identities=8% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHhcHHH-HHHHHHHhcCCch--------hHHHHHHHHhcCCHHHHHHHh
Q 005342 1 MHGSKMCIDKDTYTHLITLIMKFLEEENFKE-SLQALEQESKIFF--------NVHRFGEIVMNGEWEKAEKYL 65 (701)
Q Consensus 1 ~~~~~~~~~~~~~~e~~rli~q~l~~~g~~~-s~~~l~~Esg~~~--------~~~~~~~~i~~G~w~~~~~~l 65 (701)
|++.++.-. |+.|+.--++-+.+.||.. |..-+-+++|++- +-..|-.+|.+--.++....+
T Consensus 1 ~~~~~~~~~---r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~~~~~ 71 (206)
T 1vi0_A 1 MSLKQKRPK---YMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERM 71 (206)
T ss_dssp -------CH---HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHH---HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 8999999999999999975 8999999999995 355555555554444444433
No 422
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.28 E-value=1.4e+02 Score=24.94 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=36.5
Q ss_pred hhHHHhcCChhHHHHHHHhccc-ccccCChhHHHHHHHHhccccchhhhhccCCCCChhHHHHHHHHHHhhhcccc
Q 005342 89 YCEALCRHERTEADSIFRKDLK-VFSVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENR 163 (701)
Q Consensus 89 ~lEll~~~~~~~a~~~L~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~ 163 (701)
.-|++..|+..||.++++ +|. |. ..|++.+.......+ ......|+.+...|..+....+
T Consensus 14 l~EY~~~~D~~Ea~~cl~-eL~~p~------f~~e~V~~~i~~alE--------~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLK-ELEVPH------FHHELVYEAIVMVLE--------STGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHCCHHHHHHHHH-HHTCGG------GHHHHHHHHHHHHHH--------CCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHH-HhCCCc------cHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHHHCCC
Confidence 457778899999999999 554 42 234444333332221 0123567888888877776544
No 423
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.07 E-value=7.9e+02 Score=27.13 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=57.0
Q ss_pred CCeEEEEeCCCCc-------EEEE-ecC-CCCCeEEEEEcCCCeEEEEeCCC--cEEEEeCCCCc-eEEe-ecC-CCCCe
Q 005342 524 GGKISIFSLETFQ-------TLAT-FAN-PPPIATYFILLPQDLFAFGFDDS--SILVHCPCTKK-TKAK-LKG-HQNRI 589 (701)
Q Consensus 524 dg~I~iwd~~~~~-------~~~~-~~~-~~~~i~~l~~spdg~l~~gs~dg--~I~iwd~~~~~-~~~~-l~~-h~~~V 589 (701)
.+.|...|+.++. ..+. +.. ....+..+.+..+.++++...++ .++++|+.++. .... +.- ..+.+
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~ 398 (711)
T 4hvt_A 319 AGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAI 398 (711)
T ss_dssp TTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCE
T ss_pred CCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEE
Confidence 4678889987642 1222 332 23456788888766666767777 57788876664 2222 221 12456
Q ss_pred EEEEEecCCC-EEEEEeC---CCeEEEEECCCCe
Q 005342 590 TCLAYSLSLN-VLVSSGA---DAQLCVWDAVGWK 619 (701)
Q Consensus 590 ~~v~~spdg~-~l~s~s~---D~~I~vwd~~~g~ 619 (701)
.....++++. ++++.+. -+.++.+|+. ++
T Consensus 399 ~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 399 FGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp EEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 6666667665 4454443 4678888887 53
No 424
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=22.96 E-value=40 Score=29.58 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred cccccccchhHHHHHHHHHHHHhcHHHHHH-----HHHHhcCCchh
Q 005342 5 KMCIDKDTYTHLITLIMKFLEEENFKESLQ-----ALEQESKIFFN 45 (701)
Q Consensus 5 ~~~~~~~~~~e~~rli~q~l~~~g~~~s~~-----~l~~Esg~~~~ 45 (701)
.+.+.+...++-.+-|.++|...||+..+. -++.|||+...
T Consensus 6 ~~~~t~~~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 6 NKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 345555567888999999999999988765 48999998764
No 425
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=22.66 E-value=2.3e+02 Score=25.25 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChh
Q 005342 25 EEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERT 99 (701)
Q Consensus 25 ~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~ 99 (701)
...-|.++...+++=-.... . ...-.-....|++++|+..+.+......... .+.+ ..-.-++..|+.+
T Consensus 69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG--DLFY----MLGTVLVKLEQPK 142 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH--HHHH----HHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHH----HHHHHHHHhccHH
Confidence 33345555555554222221 1 2222334567777777777765522221111 0111 1112233557777
Q ss_pred HHHHHHHhccc
Q 005342 100 EADSIFRKDLK 110 (701)
Q Consensus 100 ~a~~~L~~~l~ 110 (701)
+|+..+++-+.
T Consensus 143 ~A~~~~~~~~~ 153 (243)
T 2q7f_A 143 LALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777775544
No 426
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.63 E-value=4e+02 Score=23.89 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhccccc--ccCCcccceehh
Q 005342 10 KDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTK--LDDSNHSKKMFF 82 (701)
Q Consensus 10 ~~~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~--~~~~~~~~~~~~ 82 (701)
+....-...+..-++..-.|.++.+.+++=.....+ ...-.-....|++++|+.++.+... ......
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------ 141 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS------ 141 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH------
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH------
Q ss_pred hhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 83 ELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 83 ~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
.++...-.-+...|+.++|+..+++-+.-... +...+..|+.++
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 185 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
No 427
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.34 E-value=3.3e+02 Score=28.68 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=43.0
Q ss_pred CeEEEEEcC----CC---eEEEEeCCCcEEEEeCC-CC-------ceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCe
Q 005342 547 IATYFILLP----QD---LFAFGFDDSSILVHCPC-TK-------KTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQ 609 (701)
Q Consensus 547 ~i~~l~~sp----dg---~l~~gs~dg~I~iwd~~-~~-------~~~~~l~~--h~~~V~~v~~spdg~~l~s~s~D~~ 609 (701)
..++|+... ++ .+..|+.+|.|.-.-+. .+ ..+..+.- ...+|..+.+++++.+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666553 24 78889999977544332 21 12233332 3468999999999999999998776
Q ss_pred EEE
Q 005342 610 LCV 612 (701)
Q Consensus 610 I~v 612 (701)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 428
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=22.05 E-value=1.2e+02 Score=24.32 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
......|+|++|+..+...-..+.... .+.+ ..=.=+...|++.+|+..+++-+.--.. +...+..|+.++..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~----~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPLVA--VYYT----NRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHH----HHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 356789999999999976522222211 1222 2222234679999999999976654322 55555566655543
No 429
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=21.85 E-value=1.7e+02 Score=24.62 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 50 GEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 50 ~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
......|++++|+..+...-...... . .++...-.-+...|+.++|+..+++-+.-. ..+...+..++.++.
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAFD--V----DVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSCC--H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccC--h----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34567899999999998773332221 1 222222333456799999999999765543 224555555555443
No 430
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=21.82 E-value=3.1e+02 Score=25.77 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhh
Q 005342 16 LITLIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 16 ~~rli~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 90 (701)
+..+...++..-.|.++...+++=-.... + ..........|++++|+..+..+-....... .+.+.+- .
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~----~ 98 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VSWFAVG----C 98 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHHHHHH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHH----H
Confidence 34455555666667777776655222111 1 3344556777888888888876632221111 1222221 2
Q ss_pred HHHhcC-ChhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 91 EALCRH-ERTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 91 Ell~~~-~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
-+...| +.++|+..+++-+.--.. +...+..+..++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 136 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 233556 778888888765543322 3444445554443
No 431
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=21.60 E-value=3.3e+02 Score=22.22 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=48.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHhcCCch---h--HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHH
Q 005342 19 LIMKFLEEENFKESLQALEQESKIFF---N--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEAL 93 (701)
Q Consensus 19 li~q~l~~~g~~~s~~~l~~Esg~~~---~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll 93 (701)
+-..++..-.|.++...+++--.... + ...-.-....|+|++|+..+.+.-....... .+.+.+ =.=+.
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~----a~~~~ 92 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRR----AASNM 92 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHH----HHHHH
Confidence 33445556667777777765433322 1 2222345668999999998876522222211 122211 11234
Q ss_pred hcCChhHHHHHHHhcccc
Q 005342 94 CRHERTEADSIFRKDLKV 111 (701)
Q Consensus 94 ~~~~~~~a~~~L~~~l~~ 111 (701)
..|+..+|+..+++-+.-
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 568999999999866543
No 432
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=21.52 E-value=61 Score=31.12 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHhcHHHHHHHHHHhcCCch-h----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHh
Q 005342 20 IMKFLEEENFKESLQALEQESKIFF-N----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALC 94 (701)
Q Consensus 20 i~q~l~~~g~~~s~~~l~~Esg~~~-~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~ 94 (701)
+-+.|++-.+.++.+.++++-.-.. | ...|.=..++|+|+.|++.|+.+..++.. +...-|-|-++|.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-------~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-------YLPGASQLRHLVK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-------GHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-------hhHHHHHHHHHHH
Confidence 4466888888999999988876665 2 66677788999999999999887544433 3334444555554
No 433
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=21.44 E-value=3.9e+02 Score=23.65 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCCchh-----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhh
Q 005342 16 LITLIMKFLEEENFKESLQALEQESKIFFN-----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYC 90 (701)
Q Consensus 16 ~~rli~q~l~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~l 90 (701)
...+-..++...-|.++...+++--....+ ...-.-....|++++|+..+........... .+.+. .-.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~----la~ 99 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYG----AGN 99 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH----HHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHH----HHH
Confidence 344445556666677776666654443331 3333455678999999999987632322211 12221 112
Q ss_pred HHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHh
Q 005342 91 EALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELL 127 (701)
Q Consensus 91 Ell~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l 127 (701)
=+...|+.++|+..+++-+.-... +...+..++.++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 135 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVL 135 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 234679999999999876553322 445555555544
No 434
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.25 E-value=1e+02 Score=21.39 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=19.5
Q ss_pred HHHHHHhcH--HHH-HHHHHHhcCCchhHHHHHHHHhcCCHHHHHHHhc
Q 005342 21 MKFLEEENF--KES-LQALEQESKIFFNVHRFGEIVMNGEWEKAEKYLS 66 (701)
Q Consensus 21 ~q~l~~~g~--~~s-~~~l~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~ 66 (701)
++-|.++|| .++ .++|+ ..+||-+.|...|-
T Consensus 13 l~~L~~MGF~d~~~n~~AL~---------------~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 13 LEQLRSMGFLNREANLQALI---------------ATGGDVDAAVEKLR 46 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHH---------------HHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHH---------------HcCCCHHHHHHHHH
Confidence 588899998 222 45664 34566666666553
No 435
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=21.02 E-value=3.8e+02 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=8.6
Q ss_pred hcCChhHHHHHHHhcc
Q 005342 94 CRHERTEADSIFRKDL 109 (701)
Q Consensus 94 ~~~~~~~a~~~L~~~l 109 (701)
..|+.++|+..+++-+
T Consensus 119 ~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHH
Confidence 3455566665555443
No 436
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=20.94 E-value=6.2e+02 Score=25.08 Aligned_cols=95 Identities=5% Similarity=-0.071 Sum_probs=47.2
Q ss_pred CCeEEEEec---CCEEEEEe-CCeEEEEeCCCCcEEEEecC-C------------CCCeEEEEEcCCC--eEEEEeCCCc
Q 005342 507 DSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN-P------------PPIATYFILLPQD--LFAFGFDDSS 567 (701)
Q Consensus 507 ~~v~~l~~s---~~~l~s~s-dg~I~iwd~~~~~~~~~~~~-~------------~~~i~~l~~spdg--~l~~gs~dg~ 567 (701)
..+.++.++ ...+..+. ++.|...+- .++.-..+.. . ...+.+++++|+. .++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 356777776 34455554 555554432 2322222211 0 1247899999973 666666544
Q ss_pred EEEEeCCCCceEEeecC--CC---CCeEEEEEec-CCCEEEEE
Q 005342 568 ILVHCPCTKKTKAKLKG--HQ---NRITCLAYSL-SLNVLVSS 604 (701)
Q Consensus 568 I~iwd~~~~~~~~~l~~--h~---~~V~~v~~sp-dg~~l~s~ 604 (701)
|+..+ ..++.-..+.. .. ..+.+++++| +...+..+
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 55544 23333333321 11 3456788887 33334333
No 437
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=20.72 E-value=54 Score=26.12 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=35.3
Q ss_pred ehhhhhhhhhhHHHhcCC---hhHHHHHHHhcccccccCChhHHHHHHHHhc
Q 005342 80 MFFELRKHKYCEALCRHE---RTEADSIFRKDLKVFSVSQNRIDCELAELLA 128 (701)
Q Consensus 80 ~~~~l~~q~~lEll~~~~---~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~ 128 (701)
+-|-=||..-+|||..+. ...||.|+.+.|--+.. ......+|+.++.
T Consensus 49 ~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~R-AKrKreel~~vl~ 99 (104)
T 4a18_Q 49 TGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR-AKVKKALLEEAVR 99 (104)
T ss_dssp HCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHHH
T ss_pred hcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHH-HHHHHHHHHHHHH
Confidence 347789999999999999 89999999988765522 3334445555543
No 438
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=20.63 E-value=1.1e+02 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHhcHHHHHHHHHHhcCCc
Q 005342 12 TYTHLITLIMKFLEEENFKESLQALEQESKIF 43 (701)
Q Consensus 12 ~~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~ 43 (701)
.|+.+-|||+--|.-=||..-|..|..+-+..
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 48999999999998889999999997776644
No 439
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.61 E-value=1e+02 Score=34.16 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=28.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 005342 588 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 626 (701)
Q Consensus 588 ~V~~v~~spdg~~l~s~s~D~~I~vwd~~~g~~~~~~~l 626 (701)
.|.++. .+..++++-+.|+++|+|+++++..+....+
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 344443 3578999999999999999999976654444
No 440
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.57 E-value=63 Score=24.71 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHhcCCchh
Q 005342 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN 45 (701)
Q Consensus 13 ~~e~~rli~q~l~~~g~~~s~~~l~~Esg~~~~ 45 (701)
-.++.+-|+++|++.| .++.-|.++-|++-.
T Consensus 15 ~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp SHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 5678888999999999 999999999999974
No 441
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.40 E-value=3.1e+02 Score=21.36 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhcC----Cch--h--HHHHHHHHhcCCHHHHHHHhcccc-cccCCcccceehhhhhhh
Q 005342 17 ITLIMKFLEEENFKESLQALEQESK----IFF--N--VHRFGEIVMNGEWEKAEKYLSAFT-KLDDSNHSKKMFFELRKH 87 (701)
Q Consensus 17 ~rli~q~l~~~g~~~s~~~l~~Esg----~~~--~--~~~~~~~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~~~l~~q 87 (701)
..+-..++..-.|.++...+++=-. -.. + ...=......|+|++|+..+...- .-++......+.|.+-.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~- 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL- 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-
Confidence 3445556667778888877765322 111 1 222234677899999999998762 22333211112332221
Q ss_pred hhhHHHhcCChhHHHHHHHhccccc
Q 005342 88 KYCEALCRHERTEADSIFRKDLKVF 112 (701)
Q Consensus 88 ~~lEll~~~~~~~a~~~L~~~l~~~ 112 (701)
=+...|+.++|+..+++-+.-.
T Consensus 85 ---~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 ---SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---HHHHcCCHHHHHHHHHHHHHHC
Confidence 1235799999999999666544
No 442
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.16 E-value=2.1e+02 Score=30.15 Aligned_cols=104 Identities=6% Similarity=-0.040 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcHHHHHHHHH--HhcCCchh----HHHHHHHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhH
Q 005342 18 TLIMKFLEEENFKESLQALE--QESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCE 91 (701)
Q Consensus 18 rli~q~l~~~g~~~s~~~l~--~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lE 91 (701)
-||--+.+.-.+.+|.+.++ ++.|+..+ -.-+......|++++|++++..+.... -.. ...-|..+=.-
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~P-d~~ty~~Li~~--- 184 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VVP-EEPELAALLKV--- 184 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHH---
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHH---
Confidence 34444455555566666665 36788776 344556677899999999888773111 111 10222222111
Q ss_pred HHhcCChhHHHHHHHhcccccc-cCChhHHHHHHHHh
Q 005342 92 ALCRHERTEADSIFRKDLKVFS-VSQNRIDCELAELL 127 (701)
Q Consensus 92 ll~~~~~~~a~~~L~~~l~~~~-~~~~~~~~~l~~~l 127 (701)
+...|+.++|+.+|+ +++-.+ .+++..+..|....
T Consensus 185 ~~~~g~~d~A~~ll~-~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 185 SMDTKNADKVYKTLQ-RLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHTTCHHHHHHHHH-HHHHHTSSBCHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHH-HHHHhCCCcCHHHHHHHHHHH
Confidence 235689999999998 555432 23566666555443
No 443
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=20.05 E-value=3.9e+02 Score=23.13 Aligned_cols=72 Identities=18% Similarity=0.088 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHhcccccccCCcccceehhhhhhhhhhHHHhcCChhHHHHHHHhcccccccCChhHHHHHHHHhcc
Q 005342 51 EIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRHERTEADSIFRKDLKVFSVSQNRIDCELAELLAL 129 (701)
Q Consensus 51 ~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~lEll~~~~~~~a~~~L~~~l~~~~~~~~~~~~~l~~~l~~ 129 (701)
.....|+|++|+..+...-.++.... ++.|.+- .=+...|++++|+..+++-+.--.. +++....|..+...
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg----~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNV--KALYKLG----VANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHH----HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccH--HHHHHHH----HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 34567889988888876522222211 1222221 1134568888888888866543311 45555555555543
Done!